Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 101 of 126
Found at i:30652915 original size:14 final size:14
Alignment explanation
Indices: 30652896--30652922 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
30652886 AATTATTGAA
30652896 TTATAGCTTATATC
1 TTATAGCTTATATC
30652910 TTATAGCTTATAT
1 TTATAGCTTATAT
30652923 GTGTTTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (14 bp):
TTATAGCTTATATC
Found at i:30653576 original size:23 final size:23
Alignment explanation
Indices: 30653544--30653620 Score: 111
Period size: 23 Copynumber: 3.3 Consensus size: 23
30653534 ATGCTAGCGC
30653544 GCTTACTGTTTCGCACTTCGTGT
1 GCTTACTGTTTCGCACTTCGTGT
*
30653567 -CTTTACTGTTTCGCACTTTGTGT
1 GC-TTACTGTTTCGCACTTCGTGT
*
30653590 GCTTACTGTTTCGCACCTCGTGT
1 GCTTACTGTTTCGCACTTCGTGT
*
30653613 GCCTACTG
1 GCTTACTG
30653621 ATTTGCGCTA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
22 1 0.02
23 46 0.96
24 1 0.02
ACGTcount: A:0.09, C:0.27, G:0.21, T:0.43
Consensus pattern (23 bp):
GCTTACTGTTTCGCACTTCGTGT
Found at i:30653643 original size:46 final size:46
Alignment explanation
Indices: 30653542--30653643 Score: 118
Period size: 46 Copynumber: 2.2 Consensus size: 46
30653532 GAATGCTAGC
* * *
30653542 GCGCTTACTGTTTCGCACTTCGTGTCTTTACTGTTTCGCACTTTGT
1 GCGCTTACTGTTTCGCACCTCGTGTCTCTACTGTTTCGCACTATGT
* *
30653588 GTGCTTACTGTTTCGCACCTCGTGTGC-CTACTGATTT-GCGCTATGT
1 GCGCTTACTGTTTCGCACCTCGTGT-CTCTACTG-TTTCGCACTATGT
*
30653634 GCGCCTACTG
1 GCGCTTACTG
30653644 ATTGCAGTGT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
46 43 0.91
47 4 0.09
ACGTcount: A:0.10, C:0.27, G:0.23, T:0.40
Consensus pattern (46 bp):
GCGCTTACTGTTTCGCACCTCGTGTCTCTACTGTTTCGCACTATGT
Found at i:30653656 original size:22 final size:22
Alignment explanation
Indices: 30653613--30653679 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 22
30653603 CACCTCGTGT
*
30653613 GCCTACTGATTTGC-GCTATGTGC
1 GCCTACTGA-TTGCAG-TGTGTGC
*
30653636 GCCTACTGATTGCAGTGTGTGT
1 GCCTACTGATTGCAGTGTGTGC
* *
30653658 GCCTATTGGATTGCATTGTGTG
1 GCCTACT-GATTGCAGTGTGTG
30653680 TACTTACTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.39
23 23 0.61
ACGTcount: A:0.13, C:0.19, G:0.30, T:0.37
Consensus pattern (22 bp):
GCCTACTGATTGCAGTGTGTGC
Found at i:30658820 original size:5 final size:5
Alignment explanation
Indices: 30658810--30658869 Score: 59
Period size: 5 Copynumber: 11.6 Consensus size: 5
30658800 CTTACAACCC
* * *
30658810 AAATA AAATA AAAT- AAACA AAGTA TAATAA AAACTCA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA AAAT-A AAA-T-A AAATA AAATA
30658857 AAATA AAATA AAA
1 AAATA AAATA AAA
30658870 AGTTTATAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
4 3 0.07
5 33 0.73
6 4 0.09
7 5 0.11
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:30667220 original size:4 final size:4
Alignment explanation
Indices: 30667211--30667253 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
30667201 TTCACTCCAT
30667211 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
30667254 CTACCTTCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:30668115 original size:24 final size:25
Alignment explanation
Indices: 30668070--30668130 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
30668060 ATTCAACTCT
*
30668070 AAATTTAAATTAAATTAAATTA-AA
1 AAATTTAATTTAAATTAAATTATAA
* **
30668094 TAATTTAATTTAAATTTGATTATAA
1 AAATTTAATTTAAATTAAATTATAA
30668119 AAATATTAATTT
1 AAAT-TTAATTT
30668131 TATTGTAACG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 18 0.60
25 5 0.17
26 7 0.23
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
AAATTTAATTTAAATTAAATTATAA
Found at i:30669642 original size:20 final size:20
Alignment explanation
Indices: 30669599--30669642 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
30669589 GGTATTGTGT
*
30669599 TTTTACTGTTTTGGTGCTTG
1 TTTTACTGTTTTGGTGCTTA
*
30669619 TTTTATTGTTTTGGTTGC-TA
1 TTTTACTGTTTTGG-TGCTTA
30669639 TTTT
1 TTTT
30669643 GGTGCTGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.07, C:0.07, G:0.20, T:0.66
Consensus pattern (20 bp):
TTTTACTGTTTTGGTGCTTA
Found at i:30669661 original size:22 final size:23
Alignment explanation
Indices: 30669636--30669720 Score: 97
Period size: 23 Copynumber: 3.8 Consensus size: 23
30669626 GTTTTGGTTG
30669636 CTATTTTGGTGCTGTTATT-TTA
1 CTATTTTGGTGCTGTTATTGTTA
*
30669658 CTATTTTGGTGCTGTTTTTGTTA
1 CTATTTTGGTGCTGTTATTGTTA
* * *
30669681 TTATTTTGGTTGTTGTT-TTGTTC
1 CTATTTTGG-TGCTGTTATTGTTA
30669704 CTATTTT--TGCTGTTATT
1 CTATTTTGGTGCTGTTATT
30669721 TTTGTTGTTG
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 6 0.11
21 2 0.04
22 18 0.33
23 22 0.41
24 6 0.11
ACGTcount: A:0.09, C:0.08, G:0.19, T:0.64
Consensus pattern (23 bp):
CTATTTTGGTGCTGTTATTGTTA
Found at i:30669682 original size:20 final size:21
Alignment explanation
Indices: 30669637--30669690 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 21
30669627 TTTTGGTTGC
30669637 TATTTTGGTGCTGTTATTTTA
1 TATTTTGGTGCTGTTATTTTA
*
30669658 CTATTTTGGTGCTGTTTTTGTTA
1 -TATTTTGGTGCTGTTATT-TTA
30669681 TTATTTTGGT
1 -TATTTTGGT
30669691 TGTTGTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 17 0.59
23 12 0.41
ACGTcount: A:0.11, C:0.06, G:0.20, T:0.63
Consensus pattern (21 bp):
TATTTTGGTGCTGTTATTTTA
Found at i:30669687 original size:12 final size:12
Alignment explanation
Indices: 30669672--30669799 Score: 118
Period size: 12 Copynumber: 10.9 Consensus size: 12
30669662 TTTGGTGCTG
*
30669672 TTTTTGTTATTA
1 TTTTTGTTGTTA
*
30669684 TTTTGGTTGTT-
1 TTTTTGTTGTTA
* **
30669695 GTTTTGTTCCTA
1 TTTTTGTTGTTA
*
30669707 TTTTTGCTGTTA
1 TTTTTGTTGTTA
*
30669719 TTTTTGTTGTTG
1 TTTTTGTTGTTA
30669731 TTTTTGTTGTTA
1 TTTTTGTTGTTA
30669743 TTTTTGTTGTT-
1 TTTTTGTTGTTA
*
30669754 GTTTTGTTGTT-
1 TTTTTGTTGTTA
* *
30669765 GTTTTGTTGTTG
1 TTTTTGTTGTTA
* *
30669777 TTTTGGTTGTTG
1 TTTTTGTTGTTA
*
30669789 TTTTGGTTGTT
1 TTTTTGTTGTT
30669800 TGGATATTAT
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
11 28 0.29
12 70 0.71
ACGTcount: A:0.04, C:0.02, G:0.23, T:0.71
Consensus pattern (12 bp):
TTTTTGTTGTTA
Found at i:30669711 original size:35 final size:35
Alignment explanation
Indices: 30669672--30669799 Score: 159
Period size: 35 Copynumber: 3.7 Consensus size: 35
30669662 TTTGGTGCTG
* **
30669672 TTTTTGTTATTATTTTGGTTGTTGTTTTGTTCCTA
1 TTTTTGTTGTTATTTTGGTTGTTGTTTTGTTGTTA
* *
30669707 TTTTTGCTGTTATTTTTGTTGTTGTTTTTGTTGTTA
1 TTTTTGTTGTTATTTTGGTTGTTG-TTTTGTTGTTA
* *
30669743 TTTTTGTTGTTGTTTT-GTTGTTGTTTTGTTGTTG
1 TTTTTGTTGTTATTTTGGTTGTTGTTTTGTTGTTA
* *
30669777 TTTTGGTTGTTGTTTTGGTTGTT
1 TTTTTGTTGTTATTTTGGTTGTT
30669800 TGGATATTAT
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
34 25 0.30
35 34 0.41
36 23 0.28
ACGTcount: A:0.04, C:0.02, G:0.23, T:0.71
Consensus pattern (35 bp):
TTTTTGTTGTTATTTTGGTTGTTGTTTTGTTGTTA
Found at i:30669730 original size:3 final size:3
Alignment explanation
Indices: 30669722--30669799 Score: 83
Period size: 3 Copynumber: 26.7 Consensus size: 3
30669712 GCTGTTATTT
* * *
30669722 TTG TTG TTG TTT TTG TTG TTA TTT TTG TTG TTG TT- TTG TTG TTG TT-
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
30669768 TTG TTG TTG TT- TTGG TTG TTG TT- TTGG TTG TT
1 TTG TTG TTG TTG TT-G TTG TTG TTG TT-G TTG TT
30669800 TGGATATTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
2 8 0.12
3 52 0.81
4 4 0.06
ACGTcount: A:0.01, C:0.00, G:0.27, T:0.72
Consensus pattern (3 bp):
TTG
Found at i:30670505 original size:14 final size:14
Alignment explanation
Indices: 30670482--30670511 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
30670472 AAATTCAAGT
30670482 TATTTATAATTAAA
1 TATTTATAATTAAA
*
30670496 TATTTTTAATTAAA
1 TATTTATAATTAAA
30670510 TA
1 TA
30670512 AATATAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATTTATAATTAAA
Found at i:30670807 original size:17 final size:17
Alignment explanation
Indices: 30670762--30670810 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
30670752 AAATTAAAAA
*
30670762 TAATAAAATAAAATATTT
1 TAATTAAAT-AAATATTT
* *
30670780 TTA-TAATTAAATATTT
1 TAATTAAATAAATATTT
30670796 TAATTAAATAAATAT
1 TAATTAAATAAATAT
30670811 AATTTTTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 10 0.40
17 13 0.52
18 2 0.08
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TAATTAAATAAATATTT
Found at i:30670816 original size:36 final size:34
Alignment explanation
Indices: 30670762--30670829 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 34
30670752 AAATTAAAAA
30670762 TAATAAAATAAAATATTTTTATA-ATTAAATATTT
1 TAATAAAATAAAATATTTTTATATA-TAAATATTT
*
30670796 TAATTAAATAAATATAATTTTTATATATAAATAT
1 TAATAAAATAAA-AT-ATTTTTATATATAAATAT
30670830 GATAATAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 11 0.37
35 2 0.07
36 16 0.53
37 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (34 bp):
TAATAAAATAAAATATTTTTATATATAAATATTT
Found at i:30673938 original size:17 final size:17
Alignment explanation
Indices: 30673916--30673962 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
30673906 AAATTACTAA
30673916 AAATATTATAAAAAC-TC
1 AAATA-TATAAAAACTTC
*
30673933 AAATATGTAAAAACTTC
1 AAATATATAAAAACTTC
* *
30673950 AAAAAAATAAAAA
1 AAATATATAAAAA
30673963 ATATTAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 8 0.32
17 17 0.68
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23
Consensus pattern (17 bp):
AAATATATAAAAACTTC
Found at i:30680231 original size:6 final size:6
Alignment explanation
Indices: 30680222--30680297 Score: 63
Period size: 6 Copynumber: 13.2 Consensus size: 6
30680212 TAAAATGATT
* * *
30680222 TTTAAA TTT-AT TTCTAAA ATTAAA TTT--A TTTAAA TTTAAA TTT-AT
1 TTTAAA TTTAAA TT-TAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
30680267 TTTAAA TTTAAA TTT-AG TTTAAA TTTGAAA T
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA T
30680298 AATTTTAAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
4 4 0.07
5 11 0.20
6 34 0.62
7 6 0.11
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:30680260 original size:34 final size:34
Alignment explanation
Indices: 30680222--30680312 Score: 132
Period size: 34 Copynumber: 2.7 Consensus size: 34
30680212 TAAAATGATT
30680222 TTTAAATTTATTTCTAAAATTAAATTTA-TTTAAA
1 TTTAAATTTATTT-TAAAATTAAATTTAGTTTAAA
*
30680256 TTTAAATTTATTTTAAATTTAAATTTAGTTTAAA
1 TTTAAATTTATTTTAAAATTAAATTTAGTTTAAA
*
30680290 TTTGAAA-TAATTTTAAAATTAAA
1 TTT-AAATTTATTTTAAAATTAAA
30680313 ATAAAAAAGC
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
33 13 0.25
34 36 0.69
35 3 0.06
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (34 bp):
TTTAAATTTATTTTAAAATTAAATTTAGTTTAAA
Found at i:30680287 original size:11 final size:12
Alignment explanation
Indices: 30680222--30680297 Score: 63
Period size: 11 Copynumber: 6.6 Consensus size: 12
30680212 TAAAATGATT
*
30680222 TTTAAATTT-AT
1 TTTAAATTTAAA
*
30680233 TTCTAAAATTAAA
1 TT-TAAATTTAAA
30680246 TTT--ATTTAAA
1 TTTAAATTTAAA
*
30680256 TTTAAATTT-AT
1 TTTAAATTTAAA
30680267 TTTAAATTTAAA
1 TTTAAATTTAAA
*
30680279 TTT-AGTTTAAA
1 TTTAAATTTAAA
30680290 TTTGAAAT
1 TTT-AAAT
30680298 AATTTTAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
10 9 0.18
11 22 0.43
12 15 0.29
13 5 0.10
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (12 bp):
TTTAAATTTAAA
Found at i:30680316 original size:17 final size:17
Alignment explanation
Indices: 30680222--30680312 Score: 114
Period size: 17 Copynumber: 5.4 Consensus size: 17
30680212 TAAAATGATT
30680222 TTTAAATTTATTTCTAAA
1 TTTAAATTTATTT-TAAA
*
30680240 ATTAAATTTA-TTTAAA
1 TTTAAATTTATTTTAAA
30680256 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
30680273 TTTAAATTTAGTTTAAA
1 TTTAAATTTATTTTAAA
*
30680290 TTTGAAA-TAATTTTAAA
1 TTT-AAATTTATTTTAAA
*
30680307 ATTAAA
1 TTTAAA
30680313 ATAAAAAAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
16 16 0.25
17 37 0.57
18 12 0.18
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:30680725 original size:21 final size:20
Alignment explanation
Indices: 30680688--30680726 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
30680678 AAAGGGTTAC
* *
30680688 AAAAACCCTGTTCTGAAACA
1 AAAAACCCAGTGCTGAAACA
30680708 AAAAACCCAGTGCTTGAAA
1 AAAAACCCAGTGC-TGAAA
30680727 TCTAGTTACG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.46, C:0.23, G:0.13, T:0.18
Consensus pattern (20 bp):
AAAAACCCAGTGCTGAAACA
Found at i:30680933 original size:3 final size:3
Alignment explanation
Indices: 30680925--30680975 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
30680915 TAATGCATAC
30680925 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
30680973 TTA
1 TTA
30680976 AGTTTTTAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:30682318 original size:30 final size:29
Alignment explanation
Indices: 30682284--30682535 Score: 263
Period size: 30 Copynumber: 8.4 Consensus size: 29
30682274 ACTGCCCAAG
30682284 AATTACATTTTGACCCTAAAACTTTCTAAA
1 AATTACATTTTGACCCTAAAACTTTCT-AA
* *
30682314 AATTACATTTTGACCCCAAAACTTTTCCAA
1 AATTACATTTTGACCCTAAAAC-TTTCTAA
*
30682344 AATTACATTTTAACCCTAAAACTTTTCTAA
1 AATTACATTTTGACCCTAAAAC-TTTCTAA
* *
30682374 AATTATATTTTGATCCTAAAACTTTTCTAA
1 AATTACATTTTGACCCTAAAAC-TTTCTAA
* * *
30682404 AATTATATTTTAACCCCAAAACTTTCTAAAA
1 AATTACATTTTGACCCTAAAACTTTCT--AA
* * *
30682435 AATTACATTTTAACCTTAAAACTTTTTAAA
1 AATTACATTTTGACCCTAAAACTTTCT-AA
* * *
30682465 AATTGCATTTTGA-TCTCAAAACTTTTCCAA
1 AATTACATTTTGACCCT-AAAAC-TTTCTAA
* *
30682495 AACTACATTTTGACCTTAAAACTTTTCTAA
1 AATTACATTTTGACCCTAAAAC-TTTCTAA
30682525 AATTACATTTT
1 AATTACATTTT
30682536 ATCCCCCCGA
Statistics
Matches: 189, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
29 6 0.03
30 150 0.79
31 33 0.17
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.40
Consensus pattern (29 bp):
AATTACATTTTGACCCTAAAACTTTCTAA
Found at i:30682550 original size:91 final size:90
Alignment explanation
Indices: 30682284--30682536 Score: 325
Period size: 91 Copynumber: 2.8 Consensus size: 90
30682274 ACTGCCCAAG
* * *
30682284 AATTACATTTTGACCCTAAAAC-TTTCTAAAAATTACATTTTGACCCCAAAACTTTTCCAAAATT
1 AATTACATTTTGATCCTAAAACTTTTC-CAAAATTACATTTTGACCCCAAAACTTTTCTAAAATT
30682348 ACATTTTAACCCTAAAACTTTTCTAA
65 ACATTTTAACCCTAAAACTTTTCTAA
* * * *
30682374 AATTATATTTTGATCCTAAAACTTTTCTAAAATTATATTTTAACCCCAAAAC-TTTCTAAAAAAT
1 AATTACATTTTGATCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCT--AAAAT
*
30682438 TACATTTTAACCTTAAAACTTTT-TAAA
64 TACATTTTAACCCTAAAACTTTTCT-AA
* * **
30682465 AATTGCATTTTGAT-CTCAAAACTTTTCCAAAACTACATTTTGACCTTAAAACTTTTCTAAAATT
1 AATTACATTTTGATCCT-AAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCTAAAATT
30682529 ACATTTTA
65 ACATTTTA
30682537 TCCCCCCGAA
Statistics
Matches: 142, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
89 4 0.03
90 59 0.42
91 74 0.52
92 5 0.04
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.40
Consensus pattern (90 bp):
AATTACATTTTGATCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCTAAAATTA
CATTTTAACCCTAAAACTTTTCTAA
Found at i:30686868 original size:21 final size:21
Alignment explanation
Indices: 30686842--30686881 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
30686832 TTTAAAACGC
30686842 TTAAAAATATTTTAAATTATA
1 TTAAAAATATTTTAAATTATA
* *
30686863 TTAAAAGTGTTTTAAATTA
1 TTAAAAATATTTTAAATTA
30686882 AAGTAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (21 bp):
TTAAAAATATTTTAAATTATA
Found at i:30690611 original size:18 final size:19
Alignment explanation
Indices: 30690575--30690614 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
30690565 TTTTTCGTAA
30690575 TTAAAATAAATTATATTTT
1 TTAAAATAAATTATATTTT
* *
30690594 TTAAGATAATTTAT-TTTT
1 TTAAAATAAATTATATTTT
30690612 TTA
1 TTA
30690615 TTTTAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (19 bp):
TTAAAATAAATTATATTTT
Found at i:30691413 original size:22 final size:22
Alignment explanation
Indices: 30691385--30691426 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
30691375 TTTAAAACGT
*
30691385 TTAAAAATTATTTTAAATTATA
1 TTAAAAAGTATTTTAAATTATA
30691407 TTAAAAAGTATTTTAAATTA
1 TTAAAAAGTATTTTAAATTA
30691427 AAGTAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
TTAAAAAGTATTTTAAATTATA
Found at i:30691433 original size:22 final size:22
Alignment explanation
Indices: 30691386--30691433 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
30691376 TTAAAACGTT
* * *
30691386 TAAAAATTATTTTAAATTATAT
1 TAAAAAGTATTTTAAATTAAAG
30691408 TAAAAAGTATTTTAAATTAAAG
1 TAAAAAGTATTTTAAATTAAAG
30691430 TAAA
1 TAAA
30691434 TTTGCTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
TAAAAAGTATTTTAAATTAAAG
Found at i:30691987 original size:20 final size:18
Alignment explanation
Indices: 30691949--30691988 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
30691939 ACAAAAACTA
*
30691949 AATAAAATAGATAATATC
1 AATAAAATAGATAAAATC
30691967 AATATAAATAGATAAAAATC
1 AATA-AAATAGAT-AAAATC
30691987 AA
1 AA
30691989 CTGTACATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 8 0.42
20 7 0.37
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (18 bp):
AATAAAATAGATAAAATC
Found at i:30698739 original size:13 final size:13
Alignment explanation
Indices: 30698721--30698746 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
30698711 CCCGGATAAT
30698721 TGAATTATTGAAG
1 TGAATTATTGAAG
30698734 TGAATTATTGAAG
1 TGAATTATTGAAG
30698747 ATGTGAAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
TGAATTATTGAAG
Found at i:30702716 original size:29 final size:30
Alignment explanation
Indices: 30702660--30702738 Score: 97
Period size: 31 Copynumber: 2.6 Consensus size: 30
30702650 ATTTTAAAAT
* *
30702660 TATACATGAATTTTGATTTAATGTGTAATTG
1 TATACATGAATTTTAATTTAA-GTGTAATTA
*
30702691 TGTACATGAATTTTAATTTAA-TGTAATTA
1 TATACATGAATTTTAATTTAAGTGTAATTA
*
30702720 TATACGTGAAATTTTAATT
1 TATACATG-AATTTTAATT
30702739 GTGGTTCAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 13 0.31
30 10 0.24
31 19 0.45
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.48
Consensus pattern (30 bp):
TATACATGAATTTTAATTTAAGTGTAATTA
Found at i:30702938 original size:30 final size:29
Alignment explanation
Indices: 30702904--30702993 Score: 92
Period size: 29 Copynumber: 3.0 Consensus size: 29
30702894 AATTTACAAG
*
30702904 AATTGGATC-AAATCAAAATTTTATGTATAA
1 AATTGGA-CAAAATCAAAA-TTCATGTATAA
* *
30702934 AATTGTACAAAATCAAAATTCATGTATAT
1 AATTGGACAAAATCAAAATTCATGTATAA
* *
30702963 AATTGCACATTAAATCATAATTCATGTATAA
1 AATTGGACA--AAATCAAAATTCATGTATAA
30702994 TTTTGATACT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 18 0.35
30 15 0.29
31 18 0.35
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.36
Consensus pattern (29 bp):
AATTGGACAAAATCAAAATTCATGTATAA
Found at i:30702959 original size:29 final size:30
Alignment explanation
Indices: 30702913--30702993 Score: 101
Period size: 31 Copynumber: 2.7 Consensus size: 30
30702903 GAATTGGATC
* *
30702913 AAATCAAAATTTTATGTATAAAATTGTACA-
1 AAATCAAAA-TTCATGTATAAAATTGCACAT
*
30702943 AAATCAAAATTCATGTATATAATTGCACATT
1 AAATCAAAATTCATGTATAAAATTGCACA-T
*
30702974 AAATCATAATTCATGTATAA
1 AAATCAAAATTCATGTATAA
30702994 TTTTGATACT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
29 17 0.39
30 9 0.20
31 18 0.41
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.36
Consensus pattern (30 bp):
AAATCAAAATTCATGTATAAAATTGCACAT
Found at i:30709178 original size:2 final size:2
Alignment explanation
Indices: 30709167--30709198 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
30709157 ATATAGAGCT
30709167 TC TC TC -C TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
30709199 AGGGGTGGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:30715473 original size:2 final size:2
Alignment explanation
Indices: 30715466--30715502 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
30715456 TCAAAGCAAA
30715466 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
30715503 TTAGTACTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:30716726 original size:24 final size:23
Alignment explanation
Indices: 30716699--30716747 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
30716689 TTTTATTTTT
*
30716699 TAACAAAAAAATATTTTTATATAA
1 TAACAAAAAAAGATTTTTATA-AA
* *
30716723 TAACATAATAAGATTTTTATAAA
1 TAACAAAAAAAGATTTTTATAAA
30716746 TA
1 TA
30716748 TATAATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (23 bp):
TAACAAAAAAAGATTTTTATAAA
Found at i:30717171 original size:19 final size:20
Alignment explanation
Indices: 30717132--30717180 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
30717122 ATTACAAAAT
30717132 AATTCAAAATAATTTTCAAA
1 AATTCAAAATAATTTTCAAA
30717152 AATTCAAAAT-ATTTAT-AAA
1 AATTCAAAATAATTT-TCAAA
30717171 AATTCTAAAA
1 AATTC-AAAA
30717181 CATATTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (20 bp):
AATTCAAAATAATTTTCAAA
Found at i:30727611 original size:5 final size:5
Alignment explanation
Indices: 30727601--30727626 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
30727591 AAAATGGGGG
30727601 AATAA AATAA AATAA AATAA AATAA A
1 AATAA AATAA AATAA AATAA AATAA A
30727627 GTTTAAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:30732135 original size:15 final size:15
Alignment explanation
Indices: 30732098--30732136 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
30732088 AGTTCTCCAC
*
30732098 CCACATGTGAAAAAG
1 CCACATGTCAAAAAG
*
30732113 CTACATGTCAAAAAG
1 CCACATGTCAAAAAG
*
30732128 CCATATGTC
1 CCACATGTC
30732137 CTACCACTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.21
Consensus pattern (15 bp):
CCACATGTCAAAAAG
Found at i:30739506 original size:20 final size:21
Alignment explanation
Indices: 30739481--30739520 Score: 64
Period size: 20 Copynumber: 1.9 Consensus size: 21
30739471 AAAAAACTAA
30739481 TGTTGTTTT-CACTGTTTTAG
1 TGTTGTTTTCCACTGTTTTAG
30739501 TGTTGTTTTGCCACTGTTTT
1 TGTTGTTTT-CCACTGTTTT
30739521 GCTGCTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.07, C:0.12, G:0.20, T:0.60
Consensus pattern (21 bp):
TGTTGTTTTCCACTGTTTTAG
Found at i:30746256 original size:13 final size:13
Alignment explanation
Indices: 30746238--30746265 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
30746228 GACTGTTAAC
30746238 TTTCTAAGTTCTT
1 TTTCTAAGTTCTT
30746251 TTTCTAAGTTCTT
1 TTTCTAAGTTCTT
30746264 TT
1 TT
30746266 GCCTCTCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (13 bp):
TTTCTAAGTTCTT
Found at i:30747275 original size:9 final size:9
Alignment explanation
Indices: 30747261--30747290 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
30747251 AGAGATGATG
30747261 AAAGGAAAA
1 AAAGGAAAA
30747270 AAAGGAAAA
1 AAAGGAAAA
30747279 AAAGGAAAA
1 AAAGGAAAA
30747288 AAA
1 AAA
30747291 AAAAGAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (9 bp):
AAAGGAAAA
Found at i:30754342 original size:45 final size:45
Alignment explanation
Indices: 30754276--30754373 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 45
30754266 CAAGGTATTT
* *
30754276 AAATTAATAAACAACTGCTAATTATCTACTAACTAACAGAATAAC
1 AAATTGATAAACAACTGCTAATTATCTACTAACTAACAAAATAAC
* * *
30754321 AAATTGATAAACAAC-GTCTAATTGTCTGCTAACTAACAAAATAAT
1 AAATTGATAAACAACTG-CTAATTATCTACTAACTAACAAAATAAC
30754366 AAATTGAT
1 AAATTGAT
30754374 TAATTATATA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 1 0.02
45 46 0.98
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (45 bp):
AAATTGATAAACAACTGCTAATTATCTACTAACTAACAAAATAAC
Found at i:30754896 original size:19 final size:20
Alignment explanation
Indices: 30754869--30754918 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
30754859 AAATATGACA
*
30754869 TTTGAAATTTTTATAAA-TAT
1 TTTG-AATTTTTAAAAATTAT
30754889 TTTGAA-TTTTAAAAATTAT
1 TTTGAATTTTTAAAAATTAT
30754908 TTTGAATTTTT
1 TTTGAATTTTT
30754919 TTATTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 8 0.30
19 11 0.41
20 8 0.30
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (20 bp):
TTTGAATTTTTAAAAATTAT
Found at i:30759986 original size:14 final size:15
Alignment explanation
Indices: 30759955--30759988 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
30759945 ATTTTATATG
30759955 GAATTTTGAATTAAT
1 GAATTTTGAATTAAT
*
30759970 GAATTTT-AATTATT
1 GAATTTTGAATTAAT
30759984 GAATT
1 GAATT
30759989 AAAAGTTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (15 bp):
GAATTTTGAATTAAT
Found at i:30761942 original size:28 final size:28
Alignment explanation
Indices: 30761904--30761958 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
30761894 AAATGAGCAT
*
30761904 CATGACCTTTGGGCTAACAGGGAGTAAG
1 CATGACCTTTGGGCTAACAGAGAGTAAG
*
30761932 CATGACCTTTGGGTTAACAGAGAGTAA
1 CATGACCTTTGGGCTAACAGAGAGTAA
30761959 ATCGGATATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (28 bp):
CATGACCTTTGGGCTAACAGAGAGTAAG
Found at i:30764605 original size:13 final size:13
Alignment explanation
Indices: 30764587--30764618 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
30764577 ATAAAGTTTG
30764587 TGTTATTTGAGAT
1 TGTTATTTGAGAT
30764600 TGTTA--TGAGAT
1 TGTTATTTGAGAT
30764611 TGTTATTT
1 TGTTATTT
30764619 TATATATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
11 11 0.65
13 6 0.35
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (13 bp):
TGTTATTTGAGAT
Found at i:30767517 original size:21 final size:21
Alignment explanation
Indices: 30767484--30767535 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
30767474 GGAGTTTTTA
*
30767484 GTATCGATAGAAG-CATTACAT
1 GTATCGGTAGAAGTCA-TACAT
* *
30767505 GTTTCGGTAGAAGTCATACTT
1 GTATCGGTAGAAGTCATACAT
30767526 GTATCGGTAG
1 GTATCGGTAG
30767536 TATTGTCTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (21 bp):
GTATCGGTAGAAGTCATACAT
Found at i:30770059 original size:28 final size:26
Alignment explanation
Indices: 30770001--30770071 Score: 81
Period size: 28 Copynumber: 2.7 Consensus size: 26
30769991 GAATAGGAAC
30770001 TATTTTAAAAAAAATTATAATTTTTA
1 TATTTTAAAAAAAATTATAATTTTTA
* *
30770027 TATTTTAAAAAATATTTTTTAATCTTTTA
1 TATTTTAAAAAA-A-ATTATAAT-TTTTA
*
30770056 -ATTTTTAAAAAAATTA
1 TATTTTAAAAAAAATTA
30770072 ATTACTTGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
26 14 0.38
27 2 0.05
28 16 0.43
29 5 0.14
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (26 bp):
TATTTTAAAAAAAATTATAATTTTTA
Found at i:30770779 original size:59 final size:59
Alignment explanation
Indices: 30770666--30770823 Score: 201
Period size: 59 Copynumber: 2.7 Consensus size: 59
30770656 TTAATATAAC
* * ** * *
30770666 ATTTGATATCTAAACTTTTTATGACTCAATTTGGTATTTGAATTTGACACTTTTTCTTA
1 ATTTGGTATCTAAACTTTTTTTGACTCAATTTGGTACCTGAACTTGACACTTTTTCCTA
*
30770725 ATTTGGTATCTAAACTTTTTTTGGACTCAATTTGGTACCTGAACTTGACATTTTTTCCTA
1 ATTTGGTATCTAAACTTTTTTT-GACTCAATTTGGTACCTGAACTTGACACTTTTTCCTA
* * *
30770785 ATTTGGTACCT-AAGTTTTTTTAGATTCAATTTGGTACCT
1 ATTTGGTATCTAAACTTTTTTT-GACTCAATTTGGTACCT
30770824 AAATTTATTG
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
59 45 0.52
60 42 0.48
ACGTcount: A:0.25, C:0.14, G:0.13, T:0.49
Consensus pattern (59 bp):
ATTTGGTATCTAAACTTTTTTTGACTCAATTTGGTACCTGAACTTGACACTTTTTCCTA
Found at i:30774665 original size:24 final size:22
Alignment explanation
Indices: 30774613--30774669 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
30774603 TCGTTCCATC
*
30774613 ACAAGTACAAAGACAGTACAATT
1 ACAAGTA-TAAGACAGTACAATT
*
30774636 AGAAGTATAAGACAGATACTAATT
1 ACAAGTATAAGACAG-TAC-AATT
30774660 ACAAGTATAA
1 ACAAGTATAA
30774670 ATATATGGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.24
23 9 0.31
24 13 0.45
ACGTcount: A:0.53, C:0.12, G:0.14, T:0.21
Consensus pattern (22 bp):
ACAAGTATAAGACAGTACAATT
Found at i:30776639 original size:23 final size:24
Alignment explanation
Indices: 30776613--30776661 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
30776603 AAAAAAATCC
*
30776613 ATATTTATATAAT-TAAAATATTT
1 ATATTTATATAATATAAAACATTT
* *
30776636 ATATTTTTATACTATAAAACATTT
1 ATATTTATATAATATAAAACATTT
30776660 AT
1 AT
30776662 TAATAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (24 bp):
ATATTTATATAATATAAAACATTT
Found at i:30776691 original size:27 final size:26
Alignment explanation
Indices: 30776656--30776713 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
30776646 ACTATAAAAC
*
30776656 ATTTATTAATAAAATATTAATATAATT
1 ATTTATTAATAAAATATTAAGA-AATT
* *
30776683 ATTTTTTAATAATATATTAAGAAATT
1 ATTTATTAATAAAATATTAAGAAATT
30776709 ATTTA
1 ATTTA
30776714 AAAATTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 8 0.30
27 19 0.70
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (26 bp):
ATTTATTAATAAAATATTAAGAAATT
Found at i:30777836 original size:21 final size:23
Alignment explanation
Indices: 30777807--30777854 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
30777797 TTTTGTGAGA
**
30777807 TTAATGAGA-ATTTTTTAAAATT
1 TTAATGAGAGATTAGTTAAAATT
*
30777829 TTAA-GAGAGCTTAGTTAAAATT
1 TTAATGAGAGATTAGTTAAAATT
30777851 TTAA
1 TTAA
30777855 AGGGAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (23 bp):
TTAATGAGAGATTAGTTAAAATT
Found at i:30778172 original size:24 final size:23
Alignment explanation
Indices: 30778117--30778181 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 23
30778107 AAATAAAATG
30778117 TGCATAATAAAATTAAAATTTAT
1 TGCATAATAAAATTAAAATTTAT
* *
30778140 GGAAGTAATAAAA-TAAAATTCTAAT
1 TGCA-TAATAAAATTAAAATT-T-AT
*
30778165 TGCATAATAAACTTAAA
1 TGCATAATAAAATTAAA
30778182 GTTCTATTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
23 9 0.27
24 16 0.48
25 8 0.24
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.32
Consensus pattern (23 bp):
TGCATAATAAAATTAAAATTTAT
Found at i:30779270 original size:2 final size:2
Alignment explanation
Indices: 30779265--30779290 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
30779255 TTATCTCCAC
30779265 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
30779291 TTTAAATAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:30782460 original size:30 final size:29
Alignment explanation
Indices: 30782432--30782490 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
30782422 TTTTTATATT
30782432 TATATTTTTAAAT-TTTTTATAATTTATA
1 TATATTTTTAAATATTTTTATAATTTATA
*
30782460 TATATTTTTAAATATTTTTATAATTTTTA
1 TATATTTTTAAATATTTTTATAATTTATA
30782489 TA
1 TA
30782491 ATTAGGACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (29 bp):
TATATTTTTAAATATTTTTATAATTTATA
Found at i:30782468 original size:20 final size:18
Alignment explanation
Indices: 30782430--30782493 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 18
30782420 TGTTTTTATA
* *
30782430 TTTATATTTTTAAAT-TT
1 TTTATAATTTTATATATT
30782447 TTTATAATTTATATATATT
1 TTTATAATTT-TATATATT
*
30782466 TTTA-AATATTTTTATAATT
1 TTTATAAT-TTTATAT-ATT
30782485 TTTATAATT
1 TTTATAATT
30782494 AGGACCAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
17 9 0.23
18 11 0.28
19 16 0.41
20 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTATAATTTTATATATT
Found at i:30782488 original size:9 final size:9
Alignment explanation
Indices: 30782430--30782493 Score: 69
Period size: 9 Copynumber: 7.0 Consensus size: 9
30782420 TGTTTTTATA
30782430 TTTAT-ATT
1 TTTATAATT
30782438 TTTA-AATTT
1 TTTATAA-TT
30782447 TTTATAATT
1 TTTATAATT
*
30782456 TATATATATT
1 TTTATA-ATT
*
30782466 TTTAAATATT
1 TTTATA-ATT
30782476 TTTATAATT
1 TTTATAATT
30782485 TTTATAATT
1 TTTATAATT
30782494 AGGACCAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
8 5 0.10
9 25 0.52
10 18 0.38
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
TTTATAATT
Found at i:30784965 original size:26 final size:26
Alignment explanation
Indices: 30784932--30785003 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
30784922 AGTCTTCCAG
30784932 AAATTTAGCTCA-TATGAGCCCAGACA
1 AAATTTAGCTCATTA-GAGCCCAGACA
* * *
30784958 GAGTTTAGCTCATTAGAGCCTAGACA
1 AAATTTAGCTCATTAGAGCCCAGACA
*
30784984 AAATTTAGCTCATTCGAGCC
1 AAATTTAGCTCATTAGAGCC
30785004 ATAGTCCAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 37 0.95
27 2 0.05
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (26 bp):
AAATTTAGCTCATTAGAGCCCAGACA
Found at i:30786602 original size:821 final size:821
Alignment explanation
Indices: 30785019--30786661 Score: 3277
Period size: 821 Copynumber: 2.0 Consensus size: 821
30785009 CCAAAATATC
30785019 CATCAAGTCTCTCATCTCGATCCATGCTCAAGAATACAATCAACATAAATGGAATTACAATTATC
1 CATCAAGTCTCTCATCTCGATCCATGCTCAAGAATACAATCAACATAAATGGAATTACAATTATC
30785084 AAATTATAAATTTAACCTTACGAACTTACCGGACTAGTTTGCAGCTATGAACTAATTTCAGGGAT
66 AAATTATAAATTTAACCTTACGAACTTACCGGACTAGTTTGCAGCTATGAACTAATTTCAGGGAT
30785149 TATTCTGTAATTTTTCCTTTTCCATGATCCGCAGCACGCTCTTGATCTATAACAATAATTCATTC
131 TATTCTGTAATTTTTCCTTTTCCATGATCCGCAGCACGCTCTTGATCTATAACAATAATTCATTC
30785214 AATTTTCTCGTTAAATCATGAAATTTCAATCATTTATTACATTTAAGTCCTTTTTGGGAAACTTA
196 AATTTTCTCGTTAAATCATGAAATTTCAATCATTTATTACATTTAAGTCCTTTTTGGGAAACTTA
30785279 CAAAATTACCCTTAGCATTTCATTTTTATTCAATTTAGTCCTTAGACCTTAAATATGCAAAATAA
261 CAAAATTACCCTTAGCATTTCATTTTTATTCAATTTAGTCCTTAGACCTTAAATATGCAAAATAA
30785344 CCATTTTCTTTTCAACCCCATACCAGCTGAATATTCAAAAGTACTTTCCCAATCCTTACACGCAA
326 CCATTTTCTTTTCAACCCCATACCAGCTGAATATTCAAAAGTACTTTCCCAATCCTTACACGCAA
30785409 TTATTTCACATCAAGTACATGTATTTTTATTGATTTAGCAATCTAGTCCCTAAACCCTAAAATCA
391 TTATTTCACATCAAGTACATGTATTTTTATTGATTTAGCAATCTAGTCCCTAAACCCTAAAATCA
30785474 TAAAAAATCCCTTCACAAAATCATCAAATCTAACAACCAAGCTCATAATACTTATATAAATTTTC
456 TAAAAAATCCCTTCACAAAATCATCAAATCTAACAACCAAGCTCATAATACTTATATAAATTTTC
30785539 AAGAACAAGCTCATTCATCAATGGTAAATTTTACAAAAATTGACAGATTCACAAATTAGTCCTTG
521 AAGAACAAGCTCATTCATCAATGGTAAATTTTACAAAAATTGACAGATTCACAAATTAGTCCTTG
30785604 AGTTAGCTTGATTAAGCTAATACGAACTCAAAGACATAAAATTTACTAAAATCGGACGAGATTTA
586 AGTTAGCTTGATTAAGCTAATACGAACTCAAAGACATAAAATTTACTAAAATCGGACGAGATTTA
30785669 CTTACTCAAATAAGAAAACGAAGCTCAAACGAAGCTCCCTTAATGGCTTCTAGTTTTTCTAGCTA
651 CTTACTCAAATAAGAAAACGAAGCTCAAACGAAGCTCCCTTAATGGCTTCTAGTTTTTCTAGCTA
30785734 TGAAGAAGAAGAAGACTAAGAAAATAACTTATTTTCTTAAGTTTTAAGATTAAAACATTATGATT
716 TGAAGAAGAAGAAGACTAAGAAAATAACTTATTTTCTTAAGTTTTAAGATTAAAACATTATGATT
30785799 TGTCACTTTATCATTTTACCCTTCTTAACTAATATTTTTCT
781 TGTCACTTTATCATTTTACCCTTCTTAACTAATATTTTTCT
*
30785840 CATCAAGTCTCTCATCTCGATCCATGCTCAAGAATACAATCAACATAAATGGAATTACAATTGTC
1 CATCAAGTCTCTCATCTCGATCCATGCTCAAGAATACAATCAACATAAATGGAATTACAATTATC
30785905 AAATTATAAATTTAACCTTACGAACTTACCGGACTAGTTTGCAGCTATGAACTAATTTCAGGGAT
66 AAATTATAAATTTAACCTTACGAACTTACCGGACTAGTTTGCAGCTATGAACTAATTTCAGGGAT
30785970 TATTCTGTAATTTTTCCTTTTCCATGATCCGCAGCACGCTCTTGATCTATAACAATAATTCATTC
131 TATTCTGTAATTTTTCCTTTTCCATGATCCGCAGCACGCTCTTGATCTATAACAATAATTCATTC
30786035 AATTTTCTCGTTAAATCATGAAATTTCAATCATTTATTACATTTAAGTCCTTTTTGGGAAACTTA
196 AATTTTCTCGTTAAATCATGAAATTTCAATCATTTATTACATTTAAGTCCTTTTTGGGAAACTTA
30786100 CAAAATTACCCTTAGCATTTCATTTTTATTCAATTTAGTCCTTAGACCTTAAATATGCAAAATAA
261 CAAAATTACCCTTAGCATTTCATTTTTATTCAATTTAGTCCTTAGACCTTAAATATGCAAAATAA
30786165 CCATTTTCTTTTCAACCCCATACCAGCTGAATATTCAAAAGTACTTTCCCAATCCTTACACGCAA
326 CCATTTTCTTTTCAACCCCATACCAGCTGAATATTCAAAAGTACTTTCCCAATCCTTACACGCAA
30786230 TTATTTCACATCAAGTACATGTATTTTTATTGATTTAGCAATCTAGTCCCTAAACCCTAAAATCA
391 TTATTTCACATCAAGTACATGTATTTTTATTGATTTAGCAATCTAGTCCCTAAACCCTAAAATCA
30786295 TAAAAAATCCCTTCACAAAATCATCAAATCTAACAACCAAGCTCATAATACTTATATAAATTTTC
456 TAAAAAATCCCTTCACAAAATCATCAAATCTAACAACCAAGCTCATAATACTTATATAAATTTTC
30786360 AAGAACAAGCTCATTCATCAATGGTAAATTTTACAAAAATTGACAGATTCACAAATTAGTCCTTG
521 AAGAACAAGCTCATTCATCAATGGTAAATTTTACAAAAATTGACAGATTCACAAATTAGTCCTTG
30786425 AGTTAGCTTGATTAAGCTAATACGAACTCAAAGACATAAAATTTACTAAAATCGGACGAGATTTA
586 AGTTAGCTTGATTAAGCTAATACGAACTCAAAGACATAAAATTTACTAAAATCGGACGAGATTTA
30786490 CTTACTCAAATAAGAAAACGAAGCTCAAACGAAGCTCCCTTAATGGCTTCTAGTTTTTCTAGCTA
651 CTTACTCAAATAAGAAAACGAAGCTCAAACGAAGCTCCCTTAATGGCTTCTAGTTTTTCTAGCTA
30786555 TGAAGAAGAAGAAGACTAAGAAAATAACTTATTTTCTTAAGTTTTAAGATTAAAACATTATGATT
716 TGAAGAAGAAGAAGACTAAGAAAATAACTTATTTTCTTAAGTTTTAAGATTAAAACATTATGATT
30786620 TGTCACTTTATCATTTTACCCTTCTTAACTAATATTTTTCT
781 TGTCACTTTATCATTTTACCCTTCTTAACTAATATTTTTCT
30786661 C
1 C
30786662 TTAATATGCC
Statistics
Matches: 821, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
821 821 1.00
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.35
Consensus pattern (821 bp):
CATCAAGTCTCTCATCTCGATCCATGCTCAAGAATACAATCAACATAAATGGAATTACAATTATC
AAATTATAAATTTAACCTTACGAACTTACCGGACTAGTTTGCAGCTATGAACTAATTTCAGGGAT
TATTCTGTAATTTTTCCTTTTCCATGATCCGCAGCACGCTCTTGATCTATAACAATAATTCATTC
AATTTTCTCGTTAAATCATGAAATTTCAATCATTTATTACATTTAAGTCCTTTTTGGGAAACTTA
CAAAATTACCCTTAGCATTTCATTTTTATTCAATTTAGTCCTTAGACCTTAAATATGCAAAATAA
CCATTTTCTTTTCAACCCCATACCAGCTGAATATTCAAAAGTACTTTCCCAATCCTTACACGCAA
TTATTTCACATCAAGTACATGTATTTTTATTGATTTAGCAATCTAGTCCCTAAACCCTAAAATCA
TAAAAAATCCCTTCACAAAATCATCAAATCTAACAACCAAGCTCATAATACTTATATAAATTTTC
AAGAACAAGCTCATTCATCAATGGTAAATTTTACAAAAATTGACAGATTCACAAATTAGTCCTTG
AGTTAGCTTGATTAAGCTAATACGAACTCAAAGACATAAAATTTACTAAAATCGGACGAGATTTA
CTTACTCAAATAAGAAAACGAAGCTCAAACGAAGCTCCCTTAATGGCTTCTAGTTTTTCTAGCTA
TGAAGAAGAAGAAGACTAAGAAAATAACTTATTTTCTTAAGTTTTAAGATTAAAACATTATGATT
TGTCACTTTATCATTTTACCCTTCTTAACTAATATTTTTCT
Found at i:30795706 original size:95 final size:94
Alignment explanation
Indices: 30795581--30795777 Score: 247
Period size: 95 Copynumber: 2.1 Consensus size: 94
30795571 GCTTCGTTTA
* * * *
30795581 AAATAAATGAGAACAACTTGTTATAGTGTTTCCTTAGAAAAGTGGGAACAAAT-AGGTAAAATGT
1 AAATAAATAAGAACAACTTATTAGAGTGTTTCCTTAAAAAAGTGGGAAC-AATCAGGTAAAATGT
* *
30795645 TTTCAGAATAA-CTAGTTATATTGTTTCACT
65 TTTCAGAATAACCT-GTCATAGTGTTTCACT
* * *
30795675 AAATAAATAAGGAACAATTTATTAGAGTGTTTCCTTAAAAAAGTGGGAACAATCAGGTATAGTGT
1 AAATAAATAA-GAACAACTTATTAGAGTGTTTCCTTAAAAAAGTGGGAACAATCAGGTAAAATGT
* *
30795740 TTTCGGAATAACCTGTCATAGTGTTTCCCT
65 TTTCAGAATAACCTGTCATAGTGTTTCACT
30795770 AAA-AAATA
1 AAATAAATA
30795778 GTGAGAACAC
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
94 17 0.19
95 70 0.79
96 2 0.02
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (94 bp):
AAATAAATAAGAACAACTTATTAGAGTGTTTCCTTAAAAAAGTGGGAACAATCAGGTAAAATGTT
TTCAGAATAACCTGTCATAGTGTTTCACT
Found at i:30798678 original size:27 final size:26
Alignment explanation
Indices: 30798647--30798705 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
30798637 CTTTGTGACA
30798647 AACTCTGTAAGGAA-CGCCTTCGTGGCG
1 AACTCT-TAA-GAATCGCCTTCGTGGCG
* * *
30798674 CACTCTTAAGAATTGCCTTTGTGGCG
1 AACTCTTAAGAATCGCCTTCGTGGCG
30798700 AACTCT
1 AACTCT
30798706 AAAGGAATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 3 0.11
26 19 0.70
27 5 0.19
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (26 bp):
AACTCTTAAGAATCGCCTTCGTGGCG
Found at i:30798722 original size:27 final size:26
Alignment explanation
Indices: 30798663--30798725 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
30798653 GTAAGGAACG
* * *
30798663 CCTTCGTGGCGCACTCTTAAGAATTGC
1 CCTT-GTGGCGAACTCTAAAGAATAGC
*
30798690 CTTTGTGGCGAACTCTAAAGGAATAGC
1 CCTTGTGGCGAACTCTAAA-GAATAGC
30798717 CCTTGTGGC
1 CCTTGTGGC
30798726 AAATTCTGAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 13 0.43
27 17 0.57
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (26 bp):
CCTTGTGGCGAACTCTAAAGAATAGC
Found at i:30800253 original size:76 final size:76
Alignment explanation
Indices: 30800127--30800279 Score: 252
Period size: 76 Copynumber: 2.0 Consensus size: 76
30800117 TATGTGGTGG
* * *
30800127 AGGGGCTAGTTTGACAAGCCTCTCAAACCATGTGCATTTCACCTTACTTCCACTTAATTTGTTCT
1 AGGGGCCAATTTGACAAGCCTCTCAAACCATGTGCATTTCACCTAACTTCCACTTAATTTGTTCT
*
30800192 CGTCCTTAGAC
66 CATCCTTAGAC
* *
30800203 AGGGGCCAATTTGGCAAGCCTCTCAAACCATGTGCATTTCACCTAACTTCCACTTAATTTTTTCT
1 AGGGGCCAATTTGACAAGCCTCTCAAACCATGTGCATTTCACCTAACTTCCACTTAATTTGTTCT
30800268 CATCCTTAGAC
66 CATCCTTAGAC
30800279 A
1 A
30800280 AAATGACACC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 71 1.00
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.33
Consensus pattern (76 bp):
AGGGGCCAATTTGACAAGCCTCTCAAACCATGTGCATTTCACCTAACTTCCACTTAATTTGTTCT
CATCCTTAGAC
Found at i:30800975 original size:15 final size:14
Alignment explanation
Indices: 30800938--30800967 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
30800928 TAAGTCAAAC
*
30800938 TTCACAATTTAGAA
1 TTCACAATTTAAAA
30800952 TTCACAATTTAAAA
1 TTCACAATTTAAAA
30800966 TT
1 TT
30800968 TGACAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.13, G:0.03, T:0.40
Consensus pattern (14 bp):
TTCACAATTTAAAA
Found at i:30806217 original size:20 final size:18
Alignment explanation
Indices: 30806182--30806225 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
30806172 TATTTAGAAT
30806182 TTTTTTAAAAAAATATTATA
1 TTTTTTAAAAAAATA-TA-A
* *
30806202 TTTTTTAACAATATATAA
1 TTTTTTAAAAAAATATAA
30806220 TTTTTT
1 TTTTTT
30806226 GAATTTTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 2 0.09
20 13 0.59
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTTTTAAAAAAATATAA
Found at i:30806237 original size:18 final size:19
Alignment explanation
Indices: 30806216--30806251 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
30806206 TTAACAATAT
30806216 ATAATT-TTTTGAATTTTC
1 ATAATTATTTTGAATTTTC
30806234 ATAATTATTTTGAATTTT
1 ATAATTATTTTGAATTTT
30806252 TTTGTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (19 bp):
ATAATTATTTTGAATTTTC
Found at i:30808033 original size:18 final size:18
Alignment explanation
Indices: 30808010--30808064 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
30808000 AAAGCTCCCT
*
30808010 AACCTGAATCCGAATCGG
1 AACCTGAATCCGAATCCG
* *
30808028 AACCTGAACCCGAACCCG
1 AACCTGAATCCGAATCCG
* *
30808046 AACCAGAATCGGAATCCG
1 AACCTGAATCCGAATCCG
30808064 A
1 A
30808065 TTTACGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.36, C:0.33, G:0.20, T:0.11
Consensus pattern (18 bp):
AACCTGAATCCGAATCCG
Found at i:30809919 original size:31 final size:32
Alignment explanation
Indices: 30809873--30809932 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
30809863 ACTACACAAC
*
30809873 TAAAAATTTTGTATTTAAGTCACTGAATTATT
1 TAAAAATTTTGTATTTAACTCACTGAATTATT
* *
30809905 TAAAAGTTTT-TATTTAACTCATTGAATT
1 TAAAAATTTTGTATTTAACTCACTGAATT
30809933 GTTAAGTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 16 0.64
32 9 0.36
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.48
Consensus pattern (32 bp):
TAAAAATTTTGTATTTAACTCACTGAATTATT
Found at i:30811123 original size:20 final size:20
Alignment explanation
Indices: 30811094--30811132 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
30811084 ATTGTATTCT
*
30811094 ATATATTTCATCCCATTTAC
1 ATATACTTCATCCCATTTAC
30811114 ATATACTTCATCCCATTTA
1 ATATACTTCATCCCATTTA
30811133 GAAGTAGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.44
Consensus pattern (20 bp):
ATATACTTCATCCCATTTAC
Found at i:30811241 original size:17 final size:17
Alignment explanation
Indices: 30811206--30811246 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
30811196 GGAAAAAATA
*
30811206 GTTACAAGAATATGAAAG
1 GTTA-AAGAAGATGAAAG
*
30811224 GTTAAAGAAGATGGAAG
1 GTTAAAGAAGATGAAAG
30811241 GTTAAA
1 GTTAAA
30811247 AGTCAAGGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.49, C:0.02, G:0.27, T:0.22
Consensus pattern (17 bp):
GTTAAAGAAGATGAAAG
Found at i:30816513 original size:20 final size:20
Alignment explanation
Indices: 30816488--30816525 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
30816478 ATTGCATTCT
30816488 ATATATTTCATCCCATTTGC
1 ATATATTTCATCCCATTTGC
30816508 ATATATTTCATCCCATTT
1 ATATATTTCATCCCATTT
30816526 ACAAATAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.24, G:0.03, T:0.47
Consensus pattern (20 bp):
ATATATTTCATCCCATTTGC
Found at i:30822135 original size:42 final size:42
Alignment explanation
Indices: 30822088--30822180 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
30822078 ACTGTCACAT
* *
30822088 TGCTCCTAAGTACGAGCCTAAACAATTCATCCAAAATGTTGA
1 TGCTCCTAAGCACAAGCCTAAACAATTCATCCAAAATGTTGA
*
30822130 TGCTCCAAAGCACAAGCCTAAACAATTCATCCAAAATGTTGA
1 TGCTCCTAAGCACAAGCCTAAACAATTCATCCAAAATGTTGA
*
30822172 TGCTTCTAA
1 TGCTCCTAA
30822181 ACATGAGCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.26
Consensus pattern (42 bp):
TGCTCCTAAGCACAAGCCTAAACAATTCATCCAAAATGTTGA
Found at i:30843081 original size:18 final size:18
Alignment explanation
Indices: 30843058--30843094 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
30843048 ACAATTCATA
30843058 TCACTTTCAATTCCAATT
1 TCACTTTCAATTCCAATT
* *
30843076 TCACTTTCACTTTCAATT
1 TCACTTTCAATTCCAATT
30843094 T
1 T
30843095 TGATCCCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (18 bp):
TCACTTTCAATTCCAATT
Found at i:30843425 original size:17 final size:18
Alignment explanation
Indices: 30843391--30843426 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
30843381 TGAATTTCTA
30843391 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
30843409 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
30843426 T
1 T
30843427 AACTCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:30847530 original size:13 final size:13
Alignment explanation
Indices: 30847512--30847538 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
30847502 TTTGGAACAT
30847512 CGAAAGGAAGAGG
1 CGAAAGGAAGAGG
30847525 CGAAAGGAAGAGG
1 CGAAAGGAAGAGG
30847538 C
1 C
30847539 TTAATCCACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.11, G:0.44, T:0.00
Consensus pattern (13 bp):
CGAAAGGAAGAGG
Found at i:30850080 original size:34 final size:34
Alignment explanation
Indices: 30850032--30850100 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
30850022 TCGAATCGTG
* *
30850032 TTAGGAGTAATTTATGGGATTTGTATATATTGTT
1 TTAGAAGTAATTTATGAGATTTGTATATATTGTT
*
30850066 TTAGAAGTAATTTATGAGATTTGTATCTATTGTT
1 TTAGAAGTAATTTATGAGATTTGTATATATTGTT
30850100 T
1 T
30850101 CCTTATTGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.28, C:0.01, G:0.20, T:0.51
Consensus pattern (34 bp):
TTAGAAGTAATTTATGAGATTTGTATATATTGTT
Found at i:30854654 original size:34 final size:34
Alignment explanation
Indices: 30854608--30854676 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
30854598 GAGAGGGGTG
*
30854608 TTAGGAGTAATTTATGGGATTTGTATATATTGTT
1 TTAGGAGCAATTTATGGGATTTGTATATATTGTT
30854642 TTAGGAGCAATTTATGGGATTTGTATATATTGTT
1 TTAGGAGCAATTTATGGGATTTGTATATATTGTT
30854676 T
1 T
30854677 CCTTATTGCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.01, G:0.23, T:0.49
Consensus pattern (34 bp):
TTAGGAGCAATTTATGGGATTTGTATATATTGTT
Found at i:30855115 original size:9 final size:9
Alignment explanation
Indices: 30855101--30855136 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
30855091 ATAATATAGT
30855101 TTTATTCGA
1 TTTATTCGA
30855110 TTTATTCGA
1 TTTATTCGA
*
30855119 ATTATTCGA
1 TTTATTCGA
*
30855128 GTTATTCGA
1 TTTATTCGA
30855137 ATTCGAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.50
Consensus pattern (9 bp):
TTTATTCGA
Found at i:30855125 original size:18 final size:18
Alignment explanation
Indices: 30855102--30855139 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
30855092 TAATATAGTT
*
30855102 TTATTCGATTTATTCGAA
1 TTATTCGAGTTATTCGAA
30855120 TTATTCGAGTTATTCGAA
1 TTATTCGAGTTATTCGAA
30855138 TT
1 TT
30855140 CGAAAATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (18 bp):
TTATTCGAGTTATTCGAA
Found at i:30859858 original size:15 final size:15
Alignment explanation
Indices: 30859838--30859903 Score: 55
Period size: 14 Copynumber: 4.3 Consensus size: 15
30859828 ACTATAAAAC
30859838 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
30859853 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
30859872 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
*
30859887 A-TTAATATTAA-AT
1 ATTTATTATTAATAT
30859900 ATTT
1 ATTT
30859904 TCAATAATAG
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.26
15 10 0.24
16 1 0.02
17 7 0.17
18 1 0.02
19 9 0.21
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:30859953 original size:13 final size:14
Alignment explanation
Indices: 30859920--30859963 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 14
30859910 ATAGGTGAAG
*
30859920 AATATTATT-TAAA
1 AATATTATTATTAA
*
30859933 AATATTATTTTTAA
1 AATATTATTATTAA
30859947 AAT-TTATTATTAA
1 AATATTATTATTAA
30859960 AATA
1 AATA
30859964 AAATTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
13 21 0.78
14 6 0.22
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATATTATTATTAA
Found at i:30859954 original size:16 final size:16
Alignment explanation
Indices: 30859922--30859961 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
30859912 AGGTGAAGAA
30859922 TATTATTTAAAAATAT
1 TATTATTTAAAAATAT
30859938 TATT-TTT-AAAAT-T
1 TATTATTTAAAAATAT
30859951 TATTA-TTAAAA
1 TATTATTTAAAA
30859962 TAAAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 7 0.32
14 8 0.36
15 3 0.14
16 4 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTATTTAAAAATAT
Found at i:30860007 original size:26 final size:29
Alignment explanation
Indices: 30859953--30860013 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 29
30859943 TTAAAATTTA
30859953 TTATTAAAATAAAATTAAAATATTAAATAAT
1 TTATTAAAATAAAATT--AATATTAAATAAT
30859984 TTATTAAAAT-AAATT-ATATT-AATAAT
1 TTATTAAAATAAAATTAATATTAAATAAT
30860010 TTAT
1 TTAT
30860014 CATATGATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
26 10 0.33
27 5 0.17
30 5 0.17
31 10 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (29 bp):
TTATTAAAATAAAATTAATATTAAATAAT
Found at i:30861661 original size:20 final size:20
Alignment explanation
Indices: 30861636--30861723 Score: 90
Period size: 20 Copynumber: 4.3 Consensus size: 20
30861626 AAAGATTACA
30861636 AAAAAATTCAAAATAATTTT
1 AAAAAATTCAAAATAATTTT
*
30861656 AAAAAATACAAAATAATTTT
1 AAAAAATTCAAAATAATTTT
*
30861676 -TAAAATTCAAAAT-ATTTAT
1 AAAAAATTCAAAATAATTT-T
**
30861695 AAAATTTTCAAAAATTATATTTT
1 AAAAAATTC-AAAA-TA-ATTTT
30861718 AAAAAA
1 AAAAAA
30861724 ATTATAAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
18 4 0.07
19 12 0.22
20 24 0.44
21 4 0.07
22 1 0.02
23 5 0.09
24 4 0.07
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAAAATTCAAAATAATTTT
Found at i:30861707 original size:39 final size:41
Alignment explanation
Indices: 30861638--30861721 Score: 102
Period size: 39 Copynumber: 2.1 Consensus size: 41
30861628 AGATTACAAA
30861638 AAAATTCAAAATAATTTTAAAAAATAC-AAAATAAT-TTTT
1 AAAATTCAAAATAATTTTAAAAAATACAAAAATAATATTTT
** * *
30861677 AAAATTCAAAAT-ATTTATAAAATTTTCAAAAATTATATTTT
1 AAAATTCAAAATAATTT-TAAAAAATACAAAAATAATATTTT
30861718 AAAA
1 AAAA
30861722 AAATTATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
38 4 0.11
39 19 0.50
40 7 0.18
41 8 0.21
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (41 bp):
AAAATTCAAAATAATTTTAAAAAATACAAAAATAATATTTT
Found at i:30864977 original size:60 final size:62
Alignment explanation
Indices: 30864912--30865080 Score: 208
Period size: 60 Copynumber: 2.8 Consensus size: 62
30864902 TTATTATAAT
** *
30864912 ATTTGGTACCTAAACTTGACACTTTTTTTTTTAATTTGATATCTAAA-TTCT-TTT-GACCCA
1 ATTTGGTACCTAAACTTGACACTTTTTTTCCTAATTTGATACCTAAACTT-TGTTTGGACCCA
* *
30864972 ATTTGGTACTTGAACTTGACAC--TTTTTCCTAATTTGATACCTAAACTTTGTTTGGACCCA
1 ATTTGGTACCTAAACTTGACACTTTTTTTCCTAATTTGATACCTAAACTTTGTTTGGACCCA
* * *
30865032 ATTTGGCATCTAAACTTGACA--TTTTTTCCTAATTTGGTACCTAAACTTT
1 ATTTGGTACCTAAACTTGACACTTTTTTTCCTAATTTGATACCTAAACTTT
30865081 TTTTAACATT
Statistics
Matches: 95, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
58 21 0.22
59 5 0.05
60 69 0.73
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.45
Consensus pattern (62 bp):
ATTTGGTACCTAAACTTGACACTTTTTTTCCTAATTTGATACCTAAACTTTGTTTGGACCCA
Found at i:30865019 original size:31 final size:31
Alignment explanation
Indices: 30864912--30865079 Score: 93
Period size: 31 Copynumber: 5.5 Consensus size: 31
30864902 TTATTATAAT
**
30864912 ATTTGGTACCTAAACTTGACACTTTTTTTTTTA
1 ATTTGGTACCTAAACTTGACAC--TTTTTCCTA
* * * *
30864945 ATTTGATATCTAAA-TT----CTTTTGACCCA
1 ATTTGGTACCTAAACTTGACACTTTT-TCCTA
* *
30864972 ATTTGGTACTTGAACTTGACACTTTTTCCTA
1 ATTTGGTACCTAAACTTGACACTTTTTCCTA
* ** *
30865003 ATTTGATACCTAAACTTTG----TTTGGACCCA
1 ATTTGGTACCTAAAC-TTGACACTTT-TTCCTA
* * *
30865032 ATTTGGCATCTAAACTTGACATTTTTTCCTA
1 ATTTGGTACCTAAACTTGACACTTTTTCCTA
30865063 ATTTGGTACCTAAACTT
1 ATTTGGTACCTAAACTT
30865080 TTTTTAACAT
Statistics
Matches: 97, Mismatches: 26, Indels: 26
0.65 0.17 0.17
Matches are distributed among these distances:
26 4 0.04
27 11 0.11
28 9 0.09
29 15 0.15
31 33 0.34
32 13 0.13
33 12 0.12
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.45
Consensus pattern (31 bp):
ATTTGGTACCTAAACTTGACACTTTTTCCTA
Found at i:30865384 original size:88 final size:89
Alignment explanation
Indices: 30865219--30865392 Score: 230
Period size: 88 Copynumber: 2.0 Consensus size: 89
30865209 TAAAAAAAGA
* * * *
30865219 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACCAAATTGGACCTCAAAAAGTTTAAGT
1 TTAGGCACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACCAAATTAGACCTAAAAAAGCTTAAGT
30865284 ACAAACTTAAAAAAA-TGTCAAGT
66 ACAAACTTAAAAAAAGTGTCAAGT
** *
30865307 TTAGGCACCAAATTAGGAAAAAGTTTCAAGTT-TGAGTACCAAATTAGACC-AAAAAAGCTTAAG
1 TTAGGCACCAAATTAGGAAAAAGAGTCAAGTTCAG-GTACCAAATTAGACCTAAAAAAGCTTAAG
30865370 TACCAAA-TTAAAAAAAAGTGTCA
65 TA-CAAACTT-AAAAAAAGTGTCA
30865393 TGTTCAGGTA
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
87 16 0.21
88 54 0.72
89 5 0.07
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.24
Consensus pattern (89 bp):
TTAGGCACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACCAAATTAGACCTAAAAAAGCTTAAGT
ACAAACTTAAAAAAAGTGTCAAGT
Found at i:30865639 original size:18 final size:18
Alignment explanation
Indices: 30865616--30865652 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
30865606 TCGATCTCCT
30865616 ACCGAACTAGATCGATTA
1 ACCGAACTAGATCGATTA
*
30865634 ACCGAATTAGATCGATTA
1 ACCGAACTAGATCGATTA
30865652 A
1 A
30865653 TTCGGTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (18 bp):
ACCGAACTAGATCGATTA
Found at i:30873759 original size:25 final size:25
Alignment explanation
Indices: 30873731--30873778 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
30873721 TTTTTTATTA
*
30873731 TTTTAAAATTATATGTTGTAATAAT
1 TTTTAAAATTATATATTGTAATAAT
***
30873756 TTTTTTGATTATATATTGTAATA
1 TTTTAAAATTATATATTGTAATA
30873779 TTAACTCACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.56
Consensus pattern (25 bp):
TTTTAAAATTATATATTGTAATAAT
Found at i:30875145 original size:18 final size:20
Alignment explanation
Indices: 30875104--30875145 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
30875094 ATTTTTTTTT
30875104 CAAAAATTTAAAAATATATG
1 CAAAAATTTAAAAATATATG
30875124 --AAAATTTAAAAA-A-ATG
1 CAAAAATTTAAAAATATATG
30875140 CAAAAA
1 CAAAAA
30875146 CGAACTGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
16 3 0.15
17 1 0.05
18 16 0.80
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.24
Consensus pattern (20 bp):
CAAAAATTTAAAAATATATG
Found at i:30891834 original size:27 final size:27
Alignment explanation
Indices: 30891780--30891834 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
30891770 ATGGAGCAAT
*
30891780 TTTATAATTAAAAAAAAACCGATGAAA
1 TTTATAATTAAAAAAAAACCGATCAAA
* *
30891807 TTTATATTTAAAAATCAAACC-ATCAAA
1 TTTATAATTAAAAA-AAAACCGATCAAA
30891834 T
1 T
30891835 CAAATATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.31
Consensus pattern (27 bp):
TTTATAATTAAAAAAAAACCGATCAAA
Found at i:30894063 original size:3 final size:3
Alignment explanation
Indices: 30894055--30894082 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
30894045 CCTCTTTTAT
30894055 TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA T
30894083 CTTTCCTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:30899869 original size:37 final size:37
Alignment explanation
Indices: 30899819--30899927 Score: 209
Period size: 37 Copynumber: 2.9 Consensus size: 37
30899809 GGTTTGTAGA
30899819 GATATTTGACAGAATAGAAAAGGATTCATTTTTTAGG
1 GATATTTGACAGAATAGAAAAGGATTCATTTTTTAGG
30899856 GATATTTGACAGAATAGAAAAGGATTCATTTTTTAGG
1 GATATTTGACAGAATAGAAAAGGATTCATTTTTTAGG
30899893 GATATTTGACAGAATAGAAAAGGATTCATTATTTT
1 GATATTTGACAGAATAGAAAAGGATTCATT-TTTT
30899928 TAGGCAGAAA
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
37 67 0.94
38 4 0.06
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.36
Consensus pattern (37 bp):
GATATTTGACAGAATAGAAAAGGATTCATTTTTTAGG
Found at i:30903291 original size:27 final size:27
Alignment explanation
Indices: 30903253--30903309 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
30903243 TTTTCATGTC
30903253 CATAAATCATTAAAATCAAAATTTAAT
1 CATAAATCATTAAAATCAAAATTTAAT
30903280 CATAAATCATTAAAATCAAAATTTAAT
1 CATAAATCATTAAAATCAAAATTTAAT
30903307 CAT
1 CAT
30903310 TTAAGCTGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.33
Consensus pattern (27 bp):
CATAAATCATTAAAATCAAAATTTAAT
Found at i:30918559 original size:30 final size:31
Alignment explanation
Indices: 30918518--30918583 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 31
30918508 TTAAGCCCTT
*
30918518 AACTTGGCAATTGTTCCCACATTGGGACCTA
1 AACTTGGCAATTGTTCCCACATTGGGACATA
* *
30918549 AACTT-GCAATTGTTCCCTCATTGGGGCATA
1 AACTTGGCAATTGTTCCCACATTGGGACATA
30918579 AACTT
1 AACTT
30918584 TAGGATTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 27 0.84
31 5 0.16
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (31 bp):
AACTTGGCAATTGTTCCCACATTGGGACATA
Found at i:30919879 original size:29 final size:29
Alignment explanation
Indices: 30919819--30919876 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
30919809 ACCTGGAAGT
*
30919819 TTTGGAGTTTAATTAAACCTTTCAAAAAA
1 TTTGGAGTTTAATTAAAACTTTCAAAAAA
* *
30919848 TTTGGGGTTTAATTAAAAGTTTACAAAAA
1 TTTGGAGTTTAATTAAAACTTT-CAAAAA
30919877 TTTTAAGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (29 bp):
TTTGGAGTTTAATTAAAACTTTCAAAAAA
Found at i:30919887 original size:30 final size:29
Alignment explanation
Indices: 30919825--30919890 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
30919815 AAGTTTTGGA
* **
30919825 GTTTAATTAAACCTTTCAAAAAATTTGGG
1 GTTTAATTAAAACTTTCAAAAAATTTAAG
* *
30919854 GTTTAATTAAAAGTTTACAAAAATTTTAAG
1 GTTTAATTAAAACTTT-CAAAAAATTTAAG
30919884 GTTTAAT
1 GTTTAAT
30919891 GATTTTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (29 bp):
GTTTAATTAAAACTTTCAAAAAATTTAAG
Found at i:30921814 original size:4 final size:4
Alignment explanation
Indices: 30921805--30921835 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
30921795 CACTTCAACC
*
30921805 ACAT ACAT ACGT ACAT ACAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
30921836 ATTGCATGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.26, G:0.03, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:30925049 original size:11 final size:11
Alignment explanation
Indices: 30925033--30925058 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30925023 GAAACCAAGG
30925033 AAATAAAATTA
1 AAATAAAATTA
30925044 AAATAAAATTA
1 AAATAAAATTA
30925055 AAAT
1 AAAT
30925059 TTGACGGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATAAAATTA
Found at i:30925221 original size:26 final size:26
Alignment explanation
Indices: 30925192--30925243 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30925182 TTTTAACAGT
* * *
30925192 AAATTTTTGAATAAAGAAAGGAAACA
1 AAATTTTTAAAGAAAGAAAAGAAACA
*
30925218 AAATTTTTAAAGAAGGAAAAGAAACA
1 AAATTTTTAAAGAAAGAAAAGAAACA
30925244 GAAGGTTGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.60, C:0.04, G:0.15, T:0.21
Consensus pattern (26 bp):
AAATTTTTAAAGAAAGAAAAGAAACA
Found at i:30928086 original size:26 final size:26
Alignment explanation
Indices: 30927992--30928086 Score: 66
Period size: 26 Copynumber: 3.6 Consensus size: 26
30927982 TTTTACTTAG
*
30927992 AATTAATTAA-GTTTATGATTGAATTT
1 AATTAA-TAAGGTTTATGTTTGAATTT
*** **
30928018 GGAATTAATTCTGTTTAAATTTGAATTT
1 --AATTAATAAGGTTTATGTTTGAATTT
**
30928046 AATTAATAATTTTTATGTTTGAATTT
1 AATTAATAAGGTTTATGTTTGAATTT
* *
30928072 ATTTAATGAGGTTTA
1 AATTAATAAGGTTTA
30928087 AGATTAAAGG
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
26 32 0.62
27 1 0.02
28 19 0.37
ACGTcount: A:0.35, C:0.01, G:0.13, T:0.52
Consensus pattern (26 bp):
AATTAATAAGGTTTATGTTTGAATTT
Found at i:30928189 original size:53 final size:55
Alignment explanation
Indices: 30928122--30928227 Score: 164
Period size: 53 Copynumber: 2.0 Consensus size: 55
30928112 TTAAGATCTT
30928122 AAGGATTTAGGGTTTAAAGTGATGAATTTAAGGTTTAATGATTTTTAA-GGTTTTA
1 AAGGATTTAGGGTTTAAAGTGATGAATTTAAGGTTT-ATGATTTTTAATGGTTTTA
* *
30928177 AAGG-TTT-GGGTTTAAAGTGATTATTTTAAGGTTTATGATTTTTAATGGTTT
1 AAGGATTTAGGGTTTAAAGTGATGAATTTAAGGTTTATGATTTTTAATGGTTT
30928228 AGGTTTTAGG
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
52 11 0.23
53 30 0.62
54 3 0.06
55 4 0.08
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (55 bp):
AAGGATTTAGGGTTTAAAGTGATGAATTTAAGGTTTATGATTTTTAATGGTTTTA
Found at i:30928240 original size:52 final size:53
Alignment explanation
Indices: 30928111--30928240 Score: 160
Period size: 53 Copynumber: 2.5 Consensus size: 53
30928101 TAGTTTAAGG
* *
30928111 TTTAAGATCTTAAGGATTTAGGGTTTAAAGTGATGAATTTAAGGTTTAATGATT
1 TTTAAGGTTTTAAGG-TTTAGGGTTTAAAGTGATGAATTTAAGGTTTAATGATT
* *
30928165 TTTAAGGTTTTAAAGGTTT-GGGTTTAAAGTGATTATTTTAAGGTTT-ATGATT
1 TTTAAGGTTTT-AAGGTTTAGGGTTTAAAGTGATGAATTTAAGGTTTAATGATT
30928217 TTTAATGG-TTT-AGGTTTTAGGGTT
1 TTTAA-GGTTTTAAGG-TTTAGGGTT
30928241 GAAGGTTTAA
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
50 3 0.04
51 3 0.04
52 19 0.28
53 27 0.40
54 12 0.18
55 4 0.06
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.48
Consensus pattern (53 bp):
TTTAAGGTTTTAAGGTTTAGGGTTTAAAGTGATGAATTTAAGGTTTAATGATT
Found at i:30928284 original size:21 final size:21
Alignment explanation
Indices: 30928254--30928304 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
30928244 GGTTTAAAAG
30928254 TTAAGGTTTTGGGTATTATAT
1 TTAAGGTTTTGGGTATTATAT
*
30928275 TTAGGGTTTTGGGTATTATAT
1 TTAAGGTTTTGGGTATTATAT
30928296 TTAAGGTTT
1 TTAAGGTTT
30928305 ATGGTTTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.53
Consensus pattern (21 bp):
TTAAGGTTTTGGGTATTATAT
Found at i:30928317 original size:14 final size:14
Alignment explanation
Indices: 30928295--30928332 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
30928285 GGGTATTATA
30928295 TTTAAGGTTTATG-G
1 TTTAAGGTTTA-GAG
*
30928309 TTTATGGTTTAGAG
1 TTTAAGGTTTAGAG
30928323 TTTAAGGTTT
1 TTTAAGGTTT
30928333 TAGTTGGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 1 0.05
14 20 0.95
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (14 bp):
TTTAAGGTTTAGAG
Found at i:30929154 original size:21 final size:21
Alignment explanation
Indices: 30929115--30929154 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
30929105 TAGGAGTAAA
*
30929115 ACGTTGTGGTGGTCGACAAGC
1 ACGTTGTGGTGCTCGACAAGC
30929136 ACGTTGTAGGTGCTC-ACAA
1 ACGTTGT-GGTGCTCGACAA
30929155 CGTTCAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (21 bp):
ACGTTGTGGTGCTCGACAAGC
Found at i:30932549 original size:27 final size:28
Alignment explanation
Indices: 30932507--30932563 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
30932497 TGGTAAACAA
*
30932507 CATTAGGTGTCGCCTGTCAAATAGGCAC
1 CATTAGGTGCCGCCTGTCAAATAGGCAC
**
30932535 CATTA-GTGCCGCCTGTCAGGTAGGCAC
1 CATTAGGTGCCGCCTGTCAAATAGGCAC
30932562 CA
1 CA
30932564 CCCAATAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.81
28 5 0.19
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (28 bp):
CATTAGGTGCCGCCTGTCAAATAGGCAC
Found at i:30947609 original size:26 final size:28
Alignment explanation
Indices: 30947580--30947639 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 28
30947570 AATTTGAATT
30947580 TATA-TTATTCCTTA-AATTCAAGAAAA
1 TATATTTATTCCTTATAATTCAAGAAAA
**
30947606 TATATTTATTTTTTATTGAATTCAAGAAAA
1 TATATTTATTCCTTA-T-AATTCAAGAAAA
30947636 TATA
1 TATA
30947640 ATTTGCTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 4 0.14
27 8 0.29
30 16 0.57
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (28 bp):
TATATTTATTCCTTATAATTCAAGAAAA
Found at i:30950762 original size:16 final size:16
Alignment explanation
Indices: 30950731--30950767 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
30950721 ATGTTAAGAA
30950731 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
30950747 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
30950763 TATTA
1 TATTA
30950768 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:30950808 original size:20 final size:18
Alignment explanation
Indices: 30950779--30950818 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
30950769 AATAAAATTG
*
30950779 AAATATTAAATAATTTATTA
1 AAATAATAAAT-A-TTATTA
30950799 AAATAATAAATATTATTA
1 AAATAATAAATATTATTA
30950817 AA
1 AA
30950819 TTATTATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 1 0.05
20 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATAATAAATATTATTA
Found at i:30963822 original size:59 final size:59
Alignment explanation
Indices: 30963749--30964003 Score: 383
Period size: 59 Copynumber: 4.4 Consensus size: 59
30963739 TGACTTTCGA
*
30963749 GGGTAAAAAT-GTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAGGTTTAG
1 GGGT-AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTAG
* * *
30963808 CGGTAAAATGGTAA-TTCTGAGTGAAAT-GGGGTTAAAAATGGAATTTTGGAAAGTTTGG
1 GGGTAAAATGGTAATTTTTG-GTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTAG
* **
30963866 GGGTAAAATGGTAATTTTGGGTGAAATCATGGTTAAAAATGGAATTTTGGAAAGTTTAG
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTAG
* *
30963925 GGGTAAAATGGTAATTTTAGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTT-G
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTAG
30963983 GGGTAAAATGGTAATTTTTGG
1 GGGTAAAATGGTAATTTTTGG
30964004 AAGTTTTGGG
Statistics
Matches: 177, Mismatches: 15, Indels: 9
0.88 0.07 0.04
Matches are distributed among these distances:
58 79 0.45
59 98 0.55
ACGTcount: A:0.35, C:0.02, G:0.30, T:0.33
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTAG
Found at i:30963901 original size:117 final size:117
Alignment explanation
Indices: 30963749--30964000 Score: 393
Period size: 117 Copynumber: 2.2 Consensus size: 117
30963739 TGACTTTCGA
* * *
30963749 GGGTAAAAAT-GTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAGGTTTAGCGGTA
1 GGGT-AAAATGGTAATTTTGGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGCGGTA
*
30963813 AAATGGTAATTCTGA-GTGAAAT-GGGGTTAAAAATGGAATTTTGGAAAGTTTGG
65 AAATGGTAATT-TGAGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTT-G
* *
30963866 GGGTAAAATGGTAATTTTGGGTGAAATCATGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAA
1 GGGTAAAATGGTAATTTTGGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGCGGTAA
*
30963931 AATGGTAATTTTAGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTG
66 AATGGTAATTTGAGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTG
30963983 GGGTAAAATGGTAATTTT
1 GGGTAAAATGGTAATTTT
30964001 TGGAAGTTTT
Statistics
Matches: 125, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
116 7 0.06
117 90 0.72
118 28 0.22
ACGTcount: A:0.35, C:0.02, G:0.30, T:0.33
Consensus pattern (117 bp):
GGGTAAAATGGTAATTTTGGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGCGGTAA
AATGGTAATTTGAGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTG
Found at i:30963985 original size:29 final size:29
Alignment explanation
Indices: 30963777--30964015 Score: 141
Period size: 29 Copynumber: 8.2 Consensus size: 29
30963767 TGGTGAAATC
*
30963777 GGGGTTAAAAATGGAATTTTGGAAGGTTT
1 GGGGTTAAAAATGGAATTTTGGAAAGTTT
* *
30963806 AGCGG-T-AAAATGGTAATTCTGAGTGAAA---T
1 -GGGGTTAAAAATGG-AATT-T-TG-GAAAGTTT
30963835 GGGGTTAAAAATGGAATTTTGGAAAGTTT
1 GGGGTTAAAAATGGAATTTTGGAAAGTTT
* *
30963864 GGGGGT-AAAATGGTAATTTTGGGTGAAA-TCAT
1 GGGGTTAAAAATGG-AATTTT--G-GAAAGT-TT
30963896 --GGTTAAAAATGGAATTTTGGAAAGTTT
1 GGGGTTAAAAATGGAATTTTGGAAAGTTT
*
30963923 AGGGG-T-AAAATGGTAATTTTAGGTGAAA--TC
1 -GGGGTTAAAAATGG-AATTTT--G-GAAAGTTT
*
30963953 GGGGTTAAAAATAGAATTTTGGAAAGTTT
1 GGGGTTAAAAATGGAATTTTGGAAAGTTT
30963982 GGGG-T-AAAATGGTAATTTTTGG-AAGTTTT
1 GGGGTTAAAAATGG-AA-TTTTGGAAAG-TTT
30964011 GGGGT
1 GGGGT
30964016 CATAAATATA
Statistics
Matches: 165, Mismatches: 13, Indels: 62
0.69 0.05 0.26
Matches are distributed among these distances:
26 4 0.02
27 16 0.10
28 34 0.21
29 52 0.32
30 30 0.18
31 17 0.10
32 12 0.07
ACGTcount: A:0.33, C:0.02, G:0.31, T:0.33
Consensus pattern (29 bp):
GGGGTTAAAAATGGAATTTTGGAAAGTTT
Found at i:30965904 original size:26 final size:27
Alignment explanation
Indices: 30965854--30965904 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
30965844 CATTGGGCCT
30965854 ATTTGGGCCATTGTAATTGGGCCTTCA
1 ATTTGGGCCATTGTAATTGGGCCTTCA
30965881 ATTTGGGCC-TT-TAATTTGGGCCTT
1 ATTTGGGCCATTGTAA-TTGGGCCTT
30965905 TGTAAATGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 3 0.13
26 11 0.48
27 9 0.39
ACGTcount: A:0.16, C:0.18, G:0.25, T:0.41
Consensus pattern (27 bp):
ATTTGGGCCATTGTAATTGGGCCTTCA
Found at i:30965905 original size:13 final size:13
Alignment explanation
Indices: 30965854--30965905 Score: 70
Period size: 13 Copynumber: 3.9 Consensus size: 13
30965844 CATTGGGCCT
30965854 ATTTGGGCCATTGTA
1 ATTTGGGCC-TT-TA
*
30965869 A-TTGGGCCTTCA
1 ATTTGGGCCTTTA
30965881 ATTTGGGCCTTTA
1 ATTTGGGCCTTTA
30965894 ATTTGGGCCTTT
1 ATTTGGGCCTTT
30965906 GTAAATGGAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
12 2 0.06
13 24 0.71
14 7 0.21
15 1 0.03
ACGTcount: A:0.15, C:0.17, G:0.25, T:0.42
Consensus pattern (13 bp):
ATTTGGGCCTTTA
Found at i:30965964 original size:17 final size:17
Alignment explanation
Indices: 30965938--30965974 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
30965928 ACATTTAATT
*
30965938 TTTATTTTAAATTTAAA
1 TTTATATTAAATTTAAA
*
30965955 TTTATATTAAGTTTAAA
1 TTTATATTAAATTTAAA
30965972 TTT
1 TTT
30965975 TAGAAAAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTATATTAAATTTAAA
Done.