Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 12 of 126
Found at i:4052452 original size:29 final size:28
Alignment explanation
Indices: 4052377--4052513 Score: 116
Period size: 30 Copynumber: 4.7 Consensus size: 28
4052367 CCCTTAATCT
*
4052377 TTTCCAAAATTCCATTTTTAACCCTAAAC
1 TTTCCAAAATTCCATTTTT-ATCCTAAAC
* ** *
4052406 TTTCTGAAAATTATATTTTT-TCCGTCGAAC
1 TTTC-CAAAATTCCATTTTTATCC-T-AAAC
*
4052436 TTTCCAAAATTCCATTTTTGATCCCT-AAT
1 TTTCCAAAATTCCATTTTT-AT-CCTAAAC
* *
4052465 TTTCCAAAAATTACATTTTTGCTCCTAAAC
1 TTTCC-AAAATTCCATTTTT-ATCCTAAAC
4052495 TTTCCAAAATTCCATTTTT
1 TTTCCAAAATTCCATTTTT
4052514 GACCCCTAAT
Statistics
Matches: 87, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
28 2 0.02
29 40 0.46
30 41 0.47
31 2 0.02
32 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.04, T:0.44
Consensus pattern (28 bp):
TTTCCAAAATTCCATTTTTATCCTAAAC
Found at i:4052475 original size:59 final size:58
Alignment explanation
Indices: 4052377--4052769 Score: 232
Period size: 59 Copynumber: 6.8 Consensus size: 58
4052367 CCCTTAATCT
* ** * *
4052377 TTTCCAAAATTCCATTTTT-AACCCTAAACTTTCTGAAAATTATATTTTT-TCCGTCGAAC
1 TTTCCAAAATTCCATTTTTGAACCCT-AATTTTCCAAAAATTACATTTTTCTCC-T-AAAC
*
4052436 TTTCCAAAATTCCATTTTTGATCCCTAATTTTCCAAAAATTACATTTTTGCTCCTAAAC
1 TTTCCAAAATTCCATTTTTGAACCCTAATTTTCCAAAAATTACATTTTT-CTCCTAAAC
* **
4052495 TTTCCAAAATTCCATTTTTGACCCCTAATTTT--TGAAATTACATTTTTAC-CCTTAAAC
1 TTTCCAAAATTCCATTTTTGAACCCTAATTTTCCAAAAATTACATTTTT-CTCC-TAAAC
* * * *
4052552 -TTCCAAAAGTTTCATTTTTG-ACTCTGA-----CAAAAATTACATTTTTACCCCTAAAC
1 TTTCCAAAA-TTCCATTTTTGAACCCTAATTTTCCAAAAATTACATTTTT-CTCCTAAAC
* * * * *
4052605 TTTCAAAAATCCCA-TTTTG-ACCCTAAAACTTT-CAAAAATTATATTTTTC-CCTCGAAC
1 TTTCCAAAATTCCATTTTTGAACCCT--AATTTTCCAAAAATTACATTTTTCTCCT-AAAC
* * * * * *
4052662 -TTCCAAAAATAT-TATTTTTGACCCCGAACTTTCCAAAAATTACCATTTTACCCCTAAA-
1 TTTCC-AAAAT-TCCATTTTTGAACCCTAATTTTCCAAAAATTA-CATTTTTCTCCTAAAC
* * * * *
4052720 TGTCTAAAAATTCTAATTTTG-ACCCTAAACTTTCCAAAAATTAGCATTTT
1 TTTC-CAAAATTCCATTTTTGAACCCT-AATTTTCCAAAAATTA-CATTTT
4052770 ACCCTCGAAT
Statistics
Matches: 271, Mismatches: 37, Indels: 52
0.75 0.10 0.14
Matches are distributed among these distances:
52 9 0.03
53 23 0.08
54 10 0.04
56 20 0.07
57 45 0.17
58 33 0.12
59 119 0.44
60 9 0.03
61 3 0.01
ACGTcount: A:0.33, C:0.23, G:0.04, T:0.40
Consensus pattern (58 bp):
TTTCCAAAATTCCATTTTTGAACCCTAATTTTCCAAAAATTACATTTTTCTCCTAAAC
Found at i:4052770 original size:59 final size:59
Alignment explanation
Indices: 4052579--4052861 Score: 235
Period size: 59 Copynumber: 4.8 Consensus size: 59
4052569 TTGACTCTGA
* **
4052579 CAAAAATTACATTTTTACCCCTAAACTTTC-AAAAA-TCCCATTTTGACCCTAAAACTTT-
1 CAAAAATTACA-TTTTACCCCTAAA-TGTCTAAAAATTCTAATTTTGACCCTAAAACTTTC
* * * * * * **
4052637 CAAAAATTATATTTTTCCCTCGAACT-TCCAAAAATAT-TATTTTTGACCC-CGAACTTTC
1 CAAAAATTACATTTTACCC-CTAAATGTCTAAAAAT-TCTAATTTTGACCCTAAAACTTTC
4052695 CAAAAATTACCATTTTACCCCTAAATGTCTAAAAATTCTAATTTTGACCCT-AAACTTTC
1 CAAAAATTA-CATTTTACCCCTAAATGTCTAAAAATTCTAATTTTGACCCTAAAACTTTC
* * * * * **
4052754 CAAAAATTAGCATTTTA-CCCTCGAATGTCTAAAAATTC-CATTTTTAACCTCAAACCATC
1 CAAAAATTA-CATTTTACCCCT-AAATGTCTAAAAATTCTAATTTTGACCCTAAAACTTTC
* * *
4052813 CAAAAATTACCATTTTACCCC-GAATGTCTAAAAATTCTATTTTTAACCC
1 CAAAAATTA-CATTTTACCCCTAAATGTCTAAAAATTCTAATTTTGACCC
4052862 CGAACCTTTT
Statistics
Matches: 184, Mismatches: 28, Indels: 25
0.78 0.12 0.11
Matches are distributed among these distances:
56 2 0.01
57 19 0.10
58 65 0.35
59 95 0.52
60 3 0.02
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.35
Consensus pattern (59 bp):
CAAAAATTACATTTTACCCCTAAATGTCTAAAAATTCTAATTTTGACCCTAAAACTTTC
Found at i:4052845 original size:58 final size:57
Alignment explanation
Indices: 4052666--4052886 Score: 255
Period size: 59 Copynumber: 3.8 Consensus size: 57
4052656 TCGAACTTCC
* * * *
4052666 AAAAATAT-TATTTTTGACCCCGAACTTTCCAAAAATTACCATTTTACCCCTAAATGTCT
1 AAAAAT-TCTATTTTT-AACCCAAACCTTCCAAAAATTACCATTTTACCCC-GAATGTCT
* * * *
4052725 AAAAATTCTAATTTTGACCCTAAACTTTCCAAAAATTAGCATTTTACCCTCGAATGTCT
1 AAAAATTCTATTTTTAACCC-AAACCTTCCAAAAATTACCATTTTACCC-CGAATGTCT
* *
4052784 AAAAATTCCATTTTTAACCTCAAACCATCCAAAAATTACCATTTTACCCCGAATGTCT
1 AAAAATTCTATTTTTAACC-CAAACCTTCCAAAAATTACCATTTTACCCCGAATGTCT
* **
4052842 AAAAATTCTATTTTTAACCCCGAACCTTTTAAAAATTACCATTTT
1 AAAAATTCTATTTTTAA-CCCAAACCTTCCAAAAATTACCATTTT
4052887 GTTTCTGAAG
Statistics
Matches: 140, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
58 50 0.36
59 88 0.63
60 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (57 bp):
AAAAATTCTATTTTTAACCCAAACCTTCCAAAAATTACCATTTTACCCCGAATGTCT
Found at i:4052862 original size:29 final size:28
Alignment explanation
Indices: 4052579--4052866 Score: 129
Period size: 29 Copynumber: 9.9 Consensus size: 28
4052569 TTGACTCTGA
* * *
4052579 CAAAAATTACATTTTTACCCCTAAACT-TT
1 CAAAAATTCCA-TTTTACCCC-GAACTGTC
* ** *
4052608 CAAAAATCCCATTTTGACCCTAAAACT-TT
1 CAAAAATTCCATTTT-ACCC-CGAACTGTC
** *
4052637 CAAAAATTATATTTTTCCCTCGAACT-TC
1 CAAAAATTCCATTTTACCC-CGAACTGTC
* *
4052665 CAAAAATAT-TATTTTTGACCCCGAACTTTC
1 CAAAAAT-TCCA-TTTT-ACCCCGAACTGTC
* *
4052695 CAAAAATTACCATTTTACCCCTAAATGTC
1 CAAAAATT-CCATTTTACCCCGAACTGTC
* * ** *
4052724 TAAAAATTCTAATTTTGACCCTAAACTTTC
1 CAAAAATTC-CATTTT-ACCCCGAACTGTC
*
4052754 CAAAAATTAGCATTTTACCCTCGAA-TGTC
1 CAAAAATT-CCATTTTACCC-CGAACTGTC
* * * **
4052783 TAAAAATTCCATTTTTAACCTCAAACCATC
1 CAAAAATTCCA-TTTT-ACCCCGAACTGTC
4052813 CAAAAATTACCATTTTACCCCGAA-TGTC
1 CAAAAATT-CCATTTTACCCCGAACTGTC
* *
4052841 TAAAAATTCTATTTTTAACCCCGAAC
1 CAAAAATTCCA-TTTT-ACCCCGAAC
4052867 CTTTTAAAAA
Statistics
Matches: 200, Mismatches: 40, Indels: 37
0.72 0.14 0.13
Matches are distributed among these distances:
27 2 0.01
28 38 0.19
29 101 0.50
30 55 0.28
31 4 0.02
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.34
Consensus pattern (28 bp):
CAAAAATTCCATTTTACCCCGAACTGTC
Found at i:4054409 original size:19 final size:19
Alignment explanation
Indices: 4054385--4054427 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
4054375 AAACATAAAT
4054385 TAAATACAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
4054404 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
4054423 TAAAT
1 TAAAT
4054428 CCTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:4066341 original size:59 final size:59
Alignment explanation
Indices: 4066243--4066617 Score: 531
Period size: 59 Copynumber: 6.4 Consensus size: 59
4066233 GGATACTCGG
* * *
4066243 GGGTAAAATGGTAA-TTTTGGTGAAATCGAGGTTAAAAATGGAATTTTTGAGAGTTCGA
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGA
*
4066301 GGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAAAGTTC-A
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGA
* *
4066359 GGGGTAAAGTGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGG
1 -GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGA
* * * **
4066419 GGGTAAAACGGTAATTTTGGGTGAAGTCAAGGTTAAAAATGGAATTTTGGAAAGTTC-A
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGA
* * * *
4066477 GGGGTAAAATGGTAATTTTGGGTGAAGTCAGGGTTAAAAATGGAATTTTGGAAAGTTCGG
1 -GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGA
* * * *
4066537 GGGTAAAATGGTAATTTTTGGTGAAATCGGAGTTAAAAATGGAATTTTGGAGAGTTTGG
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGA
4066596 GGGTAAAAATGGTAATTTTTGG
1 GGGT-AAAATGGTAATTTTTGG
4066618 AAGCTTCGAG
Statistics
Matches: 288, Mismatches: 23, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
58 15 0.05
59 256 0.89
60 17 0.06
ACGTcount: A:0.33, C:0.03, G:0.32, T:0.32
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGA
Found at i:4066513 original size:177 final size:176
Alignment explanation
Indices: 4066239--4066614 Score: 592
Period size: 177 Copynumber: 2.1 Consensus size: 176
4066229 TTTTGGATAC
* * *
4066239 TCGGGGGTAAAATGGTAATTTTGGTGAAATCGAGGTTAAAAATGGAATTTTTGAGAGTTCGAGGG
1 TCGGGGGTAAAATGGTAATTTTGGTGAAATCAAGGTTAAAAATGGAATTTTGGAAAGTTCGAGGG
* ** *
4066304 TAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAGT
66 TAAAATGGTAATTTTGGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAAT
*
4066369 GGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGT
131 GGTAATTTTTGGTGAAATCGGAGTTAAAAATGGAATTTTGGAAAGT
* *
4066415 TCGGGGGTAAAACGGTAATTTTGGGTGAAGTCAAGGTTAAAAATGGAATTTTGGAAAGTTC-AGG
1 TCGGGGGTAAAATGGTAATTTT-GGTGAAATCAAGGTTAAAAATGGAATTTTGGAAAGTTCGA-G
* *
4066479 GGTAAAATGGTAATTTTGGGTGAAGTCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAA
64 GGTAAAATGGTAATTTTGGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAA
*
4066544 ATGGTAATTTTTGGTGAAATCGGAGTTAAAAATGGAATTTTGGAGAGT
129 ATGGTAATTTTTGGTGAAATCGGAGTTAAAAATGGAATTTTGGAAAGT
*
4066592 TTGGGGGTAAAAATGGTAATTTT
1 TCGGGGGT-AAAATGGTAATTTT
4066615 TGGAAGCTTC
Statistics
Matches: 182, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
176 22 0.12
177 147 0.81
178 13 0.07
ACGTcount: A:0.33, C:0.03, G:0.32, T:0.32
Consensus pattern (176 bp):
TCGGGGGTAAAATGGTAATTTTGGTGAAATCAAGGTTAAAAATGGAATTTTGGAAAGTTCGAGGG
TAAAATGGTAATTTTGGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAAT
GGTAATTTTTGGTGAAATCGGAGTTAAAAATGGAATTTTGGAAAGT
Found at i:4067026 original size:33 final size:34
Alignment explanation
Indices: 4066949--4067028 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
4066939 TTGCTGGGTA
* * *
4066949 AAATTGCAAATAATTAAAAATACAGAAAAGGACT
1 AAATCGCAAATAAATAAAAATACAGAAAAGGACC
* *
4066983 AAATTG-AAATAAATAAAAATAC-G-GAAGGACC
1 AAATCGCAAATAAATAAAAATACAGAAAAGGACC
4067014 AAATACGCAAATAAA
1 AAAT-CGCAAATAAA
4067029 GCATTAAACG
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
31 10 0.25
32 2 0.05
33 22 0.55
34 6 0.15
ACGTcount: A:0.60, C:0.10, G:0.12, T:0.17
Consensus pattern (34 bp):
AAATCGCAAATAAATAAAAATACAGAAAAGGACC
Found at i:4073275 original size:58 final size:58
Alignment explanation
Indices: 4073200--4073511 Score: 262
Period size: 59 Copynumber: 5.3 Consensus size: 58
4073190 TGATAAATGA
* * * * *
4073200 TGAAATCGGGGTGAAAAACGGGACTTATGGATACCCGGGGGCAAAATGGTAATTTTGG
1 TGAAATCGGGGTTAAAAACGGGAATTATAGATACTCGGGGGTAAAATGGTAATTTTGG
* * * * *
4073258 TAAAATCGGGGTTAAAAATGGGATTTTAAAAGAT--TCGGGGGTAAAATGGTAATTTTTGA
1 TGAAATCGGGGTTAAAAACGGGA-ATT-ATAGATACTCGGGGGTAAAATGGTAA-TTTTGG
* * *
4073317 TGAAATCGGGGTTAAAAA-TGGAATTTTAGA-AGCTTCGGGGGTAAAATGATAATTTTCGG
1 TGAAATCGGGGTTAAAAACGGGAATTATAGATA-C-TCGGGGGTAAAATGGTAATTTT-GG
* * **
4073376 TGAAATCGGGGTTAAAAAC-AGAATTTTAGA-AGCTTCAAGGGTAAAAATGGTAATTTTCGG
1 TGAAATCGGGGTTAAAAACGGGAATTATAGATA-C-TCGGGGGT-AAAATGGTAATTTT-GG
* * * *
4073436 TGAAATCGGGGTTAAAAA-TGGAATTTTAGA-ATCTTCGGGGGTAAAGTGGTAATGTTCGG
1 TGAAATCGGGGTTAAAAACGGGAATTATAGATA-C-TCGGGGGTAAAATGGTAAT-TTTGG
4073495 TGAAATCGGGGTTAAAA
1 TGAAATCGGGGTTAAAA
4073512 TGTAATTTTG
Statistics
Matches: 216, Mismatches: 26, Indels: 23
0.82 0.10 0.09
Matches are distributed among these distances:
56 3 0.01
57 2 0.01
58 43 0.20
59 109 0.50
60 59 0.27
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.29
Consensus pattern (58 bp):
TGAAATCGGGGTTAAAAACGGGAATTATAGATACTCGGGGGTAAAATGGTAATTTTGG
Found at i:4073278 original size:30 final size:30
Alignment explanation
Indices: 4073242--4073587 Score: 147
Period size: 30 Copynumber: 11.7 Consensus size: 30
4073232 ACCCGGGGGC
4073242 AAAATGGTAATTTTGGTAAAATCGGGGTTA
1 AAAATGGTAATTTTGGTAAAATCGGGGTTA
* * *
4073272 AAAATGG-GATTTT--AAAAGATTCGGGGGT-
1 AAAATGGTAATTTTGGTAAA-A-TCGGGGTTA
* *
4073300 AAAATGGTAATTTTTGATGAAATCGGGGTTA
1 AAAATGGTAA-TTTTGGTAAAATCGGGGTTA
* ** *
4073331 AAAATGG-AATTTTAG-AAGCTTCGGGGGT-
1 AAAATGGTAATTTTGGTAA-AATCGGGGTTA
* *
4073359 AAAATGATAATTTTCGGTGAAATCGGGGTTA
1 AAAATGGTAATTTT-GGTAAAATCGGGGTTA
** * ** *
4073390 AAAACAG-AATTTTAG-AAGCTTCAAGGG-TA
1 AAAATGGTAATTTTGGTAA-AATC-GGGGTTA
*
4073419 AAAATGGTAATTTTCGGTGAAATCGGGGTTA
1 AAAATGGTAATTTT-GGTAAAATCGGGGTTA
* ** *
4073450 AAAATGG-AATTTTAG-AATCTTCGGGGGT-
1 AAAATGGTAATTTTGGTAA-AATCGGGGTTA
* * *
4073478 AAAGTGGTAATGTTCGGTGAAATCGGGGTT-
1 AAAATGGTAAT-TTTGGTAAAATCGGGGTTA
* *
4073508 AAAAT-GTAATTTTGG-AAAAGTTTTGGGG-TC
1 AAAATGGTAATTTTGGTAAAA---TCGGGGTTA
* *
4073538 AAAAT-GTAATTTTGGTAAAGTTTCGGGGTCA
1 AAAATGGTAATTTTGGTAAA--ATCGGGGTTA
*
4073569 AAAAT-ATAATTTTGG-AAAA
1 AAAATGGTAATTTTGGTAAAA
4073588 GTTTTGGGGT
Statistics
Matches: 230, Mismatches: 56, Indels: 62
0.66 0.16 0.18
Matches are distributed among these distances:
27 6 0.03
28 27 0.12
29 57 0.25
30 94 0.41
31 43 0.19
32 3 0.01
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (30 bp):
AAAATGGTAATTTTGGTAAAATCGGGGTTA
Found at i:4073451 original size:119 final size:118
Alignment explanation
Indices: 4073235--4073511 Score: 403
Period size: 119 Copynumber: 2.3 Consensus size: 118
4073225 TATGGATACC
* * ** * **
4073235 CGGGGGCAAAATGGTAATTTT-GGTAAAATCGGGGTTAAAAATGGGATTTTAAAAGATTCGGGGG
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACAGAATTTTAAAAGATTCAAGGG
*
4073299 TAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
66 TAAAATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
* * *
4073352 CGGGGGTAAAATGATAATTTTCGGTGAAATCGGGGTTAAAAACAGAATTTTAGAAGCTTCAAGGG
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACAGAATTTTAAAAGATTCAAGGG
* *
4073417 TAAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAATCTT
66 T-AAAATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
* *
4073471 CGGGGGTAAAGTGGTAATGTTCGGTGAAATCGGGGTTAAAA
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAA
4073512 TGTAATTTTG
Statistics
Matches: 142, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
117 19 0.13
118 36 0.25
119 87 0.61
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (118 bp):
CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACAGAATTTTAAAAGATTCAAGGG
TAAAATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
Found at i:4073452 original size:60 final size:59
Alignment explanation
Indices: 4073235--4073520 Score: 405
Period size: 59 Copynumber: 4.9 Consensus size: 59
4073225 TATGGATACC
* * * * *
4073235 CGGGGGCAAAATGGTAATTTT-GGTAAAATCGGGGTTAAAAATGGGATTTTAAAAGATT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
* *
4073293 CGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
* **
4073352 CGGGGGTAAAATGATAATTTTCGGTGAAATCGGGGTTAAAAACAGAATTTTAGAAGCTT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
** *
4073411 CAAGGGTAAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAATCTT
1 CGGGGGT-AAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
* * *
4073471 CGGGGGTAAAGTGGTAATGTTCGGTGAAATCGGGGTT-AAAATGTAATTTT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTT
4073521 GGAAAAGTTT
Statistics
Matches: 204, Mismatches: 22, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
58 32 0.16
59 119 0.58
60 53 0.26
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (59 bp):
CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
Found at i:4073542 original size:119 final size:116
Alignment explanation
Indices: 4073235--4073550 Score: 386
Period size: 119 Copynumber: 2.7 Consensus size: 116
4073225 TATGGATACC
* * * * *
4073235 CGGGGGCAAAATGGTAATTTTGGTAAAATCGGGGTTAAAAATGGGATTTTAAAAGATTCGGGGGT
1 CGGGGGTAAAATGGTAATTTCGGTGAAATCGGGGTTAAAAAT-GAATTTTAAAAGATTCAGGGGT
*
4073300 AAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
65 AAAATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
* * * * *
4073352 CGGGGGTAAAATGATAATTTTCGGTGAAATCGGGGTTAAAAACAGAATTTTAGAAGCTTCAAGGG
1 CGGGGGTAAAATGGTAA-TTTCGGTGAAATCGGGGTTAAAAA-TGAATTTTAAAAGATTCAGGGG
* *
4073417 TAAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAATCTT
64 T-AAAATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
* **
4073471 CGGGGGTAAAGTGGTAATGTTCGGTGAAATCGGGGTT-AAAATGTAATTTTGGAAAAG-TTTTGG
1 CGGGGGTAAAATGGTAAT-TTCGGTGAAATCGGGGTTAAAAATG-AATTTT--AAAAGATTCAGG
4073534 GGTCAAAAT-GTAATTTT
62 GGT-AAAATGGTAATTTT
4073551 GGTAAAGTTT
Statistics
Matches: 171, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
117 16 0.09
118 58 0.34
119 93 0.54
120 4 0.02
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (116 bp):
CGGGGGTAAAATGGTAATTTCGGTGAAATCGGGGTTAAAAATGAATTTTAAAAGATTCAGGGGTA
AAATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
Found at i:4073579 original size:31 final size:31
Alignment explanation
Indices: 4073500--4073610 Score: 140
Period size: 30 Copynumber: 3.7 Consensus size: 31
4073490 TTCGGTGAAA
*
4073500 TCGGGGT-TAAAATGTAATTTTGGAAAAGTT
1 TCGGGGTCAAAAATGTAATTTTGGAAAAGTT
* *
4073530 TTGGGGTC-AAAATGTAATTTTGGTAAAGTT
1 TCGGGGTCAAAAATGTAATTTTGGAAAAGTT
*
4073560 TCGGGGTCAAAAATATAATTTTGGAAAAGTT
1 TCGGGGTCAAAAATGTAATTTTGGAAAAGTT
* *
4073591 TTGGGGT-TAAAATGT-ATTTT
1 TCGGGGTCAAAAATGTAATTTT
4073611 CTGGACAATT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
29 5 0.07
30 40 0.56
31 26 0.37
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.39
Consensus pattern (31 bp):
TCGGGGTCAAAAATGTAATTTTGGAAAAGTT
Found at i:4074892 original size:6 final size:6
Alignment explanation
Indices: 4074868--4074972 Score: 72
Period size: 6 Copynumber: 17.0 Consensus size: 6
4074858 GACATTGGAC
* * *
4074868 TTTAAA TTTTTAA TGTTAAA TTTAATA TTTTAA TCTT-TA TTTAAA TTTAAA
1 TTTAAA -TTTAAA T-TTAAA TTTAA-A TTTAAA T-TTAAA TTTAAA TTTAAA
* * * *
4074919 TTCAAA -TTAAA TTTAAATA TTTAAT TTTAAA TTTAAA -ATAAA TCTAAA
1 TTTAAA TTTAAA TTT-AA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
4074967 TTTAAA
1 TTTAAA
4074973 CAAATTTTAA
Statistics
Matches: 78, Mismatches: 12, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
5 10 0.13
6 43 0.55
7 21 0.27
8 4 0.05
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:4074940 original size:31 final size:31
Alignment explanation
Indices: 4074905--4074967 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
4074895 TTTTAATCTT
* *
4074905 TATTTAAATTTAAATTCAAATTAAATTTAAA
1 TATTTAAATTTAAATTCAAAATAAATCTAAA
* *
4074936 TATTTAATTTTAAATTTAAAATAAATCTAAA
1 TATTTAAATTTAAATTCAAAATAAATCTAAA
4074967 T
1 T
4074968 TTAAACAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (31 bp):
TATTTAAATTTAAATTCAAAATAAATCTAAA
Found at i:4074983 original size:17 final size:17
Alignment explanation
Indices: 4074907--4074983 Score: 59
Period size: 17 Copynumber: 4.4 Consensus size: 17
4074897 TTAATCTTTA
*
4074907 TTTAAATTTAAATTCAA-
1 TTTAAATTTAAAAT-AAT
*
4074924 ATTAAATTTAAATATTTAAT
1 TTTAAATTTAAA-A--TAAT
*
4074944 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAT
*
4074961 TCTAAATTTAAACA-AAT
1 TTTAAATTTAAA-ATAAT
4074978 TTTAAA
1 TTTAAA
4074984 AAATCAATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
17 32 0.67
18 1 0.02
19 3 0.06
20 12 0.25
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (17 bp):
TTTAAATTTAAAATAAT
Found at i:4075619 original size:2 final size:2
Alignment explanation
Indices: 4075614--4075668 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
4075604 TTTTTTTCAC
4075614 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4075656 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
4075669 TTAATATCAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4085571 original size:17 final size:17
Alignment explanation
Indices: 4085544--4085578 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
4085534 TTTGAAGAAA
4085544 GAAAAAAAAAACATATAT
1 GAAAAAAAAAA-ATATAT
*
4085562 GAAAAGAAAAAATATAT
1 GAAAAAAAAAAATATAT
4085579 ATTTTTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.17
Consensus pattern (17 bp):
GAAAAAAAAAAATATAT
Found at i:4085573 original size:19 final size:18
Alignment explanation
Indices: 4085544--4085580 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
4085534 TTTGAAGAAA
4085544 GAAAAAAAAAACATATAT
1 GAAAAAAAAAACATATAT
*
4085562 GAAAAGAAAAAATATATAT
1 GAAAA-AAAAAACATATAT
4085581 TTTTTATCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.70, C:0.03, G:0.08, T:0.19
Consensus pattern (18 bp):
GAAAAAAAAAACATATAT
Found at i:4086388 original size:31 final size:31
Alignment explanation
Indices: 4086351--4086409 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
4086341 TTTTTTTGGT
*
4086351 CTAATTTGGTACTCAAACTTGACACTTTTTC
1 CTAATTTGGTACCCAAACTTGACACTTTTTC
4086382 CTAATTTGGTACCCAAACTTGACACTTT
1 CTAATTTGGTACCCAAACTTGACACTTT
4086410 ATTTTAAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (31 bp):
CTAATTTGGTACCCAAACTTGACACTTTTTC
Found at i:4086422 original size:31 final size:31
Alignment explanation
Indices: 4086351--4086422 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
4086341 TTTTTTTGGT
* *
4086351 CTAATTTGGTACTCAAACTTGACACTTTTTC
1 CTAAGTTGGTACCCAAACTTGACACTTTTTC
*
4086382 CTAATTTGGTACCCAAACTTGACACTTTATT-
1 CTAAGTTGGTACCCAAACTTGACACTTT-TTC
*
4086413 TTAAGTTGGT
1 CTAAGTTGGT
4086423 GCTTCAACTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 35 0.95
32 2 0.05
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.42
Consensus pattern (31 bp):
CTAAGTTGGTACCCAAACTTGACACTTTTTC
Found at i:4086743 original size:59 final size:59
Alignment explanation
Indices: 4086679--4086822 Score: 161
Period size: 60 Copynumber: 2.5 Consensus size: 59
4086669 CACTAAATGA
* *
4086679 AAAAAAATACCAAGTTC-AGATACCAAATTGGGTCCAAAAAAAGTCTAGGTACCAAATTAG
1 AAAAAATTACCAAGTTCAAG-TACCAAATTGAGT-CAAAAAAAGTCTAGGTACCAAATTAG
** * *
4086739 AAAAAATTGTCAAGTTCAAGTACCAAATTGAGTCAAAAAATGTTTAGGTACCAAA-T--
1 AAAAAATTACCAAGTTCAAGTACCAAATTGAGTCAAAAAAAGTCTAGGTACCAAATTAG
* * *
4086795 AAAAAAGTATCAAATTCAAGTACCAAAT
1 AAAAAATTACCAAGTTCAAGTACCAAAT
4086823 ATTATATTAA
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
56 25 0.34
58 1 0.01
59 20 0.27
60 26 0.35
61 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.23
Consensus pattern (59 bp):
AAAAAATTACCAAGTTCAAGTACCAAATTGAGTCAAAAAAAGTCTAGGTACCAAATTAG
Found at i:4086821 original size:56 final size:59
Alignment explanation
Indices: 4086655--4086822 Score: 166
Period size: 59 Copynumber: 2.9 Consensus size: 59
4086645 TGAATATAAA
* * * * * * *
4086655 AAAAAAAG-CTTAGGCACTAAATGAAAAAAAATACCAAGTTC-AGATACCAAATTGGGTCC
1 AAAAAAAGTC-TAGGTACCAAATTAAAAAAAGTATCAAATTCAAG-TACCAAATTGAGTCC
* * *
4086714 AAAAAAAGTCTAGGTACCAAATTAGAAAAAATTGTCAAGTTCAAGTACCAAATTGAGT-C
1 AAAAAAAGTCTAGGTACCAAATTA-AAAAAAGTATCAAATTCAAGTACCAAATTGAGTCC
* *
4086773 AAAAAATGTTTAGGTACCAAA-T-AAAAAAGTATCAAATTCAAGTACCAAAT
1 AAAAAAAGTCTAGGTACCAAATTAAAAAAAGTATCAAATTCAAGTACCAAAT
4086823 ATTATATTAA
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
56 25 0.27
58 1 0.01
59 39 0.41
60 27 0.29
61 2 0.02
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.22
Consensus pattern (59 bp):
AAAAAAAGTCTAGGTACCAAATTAAAAAAAGTATCAAATTCAAGTACCAAATTGAGTCC
Found at i:4093845 original size:470 final size:468
Alignment explanation
Indices: 4092310--4094983 Score: 3812
Period size: 470 Copynumber: 5.7 Consensus size: 468
4092300 TTTCTTAACA
*
4092310 AGCTTTAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
* *
4092375 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTTAAATGCAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
* *
4092440 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTTTACCAAAAGAAATAGGAAACATG
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
* * *
4092505 ACAATGCTTAGGAGTCT-ATCTCTTGTCAACAACCTGATTGAAGGTAAATGAACAGCATTT-G--
196 ACAATGCTTAGGAGTCTAATCTC-AG-CAACAACCTGATTGAAGGTAAACGAAAAGCATTTAGAT
* * ***
4092566 G--------A-T-G-TTATTTTAATTTGTTGTCTTGCTCCAACTATAATATTTACTTTGTTTGGT
259 GCTATTTTAATTAGATTATTTTAATTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTGTTTGGT
* *
4092620 AAGAAAGCTTCTATTCTTTTCTCTTTTTTACCAAGTAAAATCTT-AAGTTCTTCTTTTAGACTTA
324 AAGAAAGCTTCAATTCTTTTCT-TTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTA
* * *
4092684 TAAACCTGTTTTTTTAACAATTTCTGCGGAGAAATCCCAACATGGTTTGATTCCTT-CCGTAAAC
388 TAAACTTGTTTTTTTAACAATTTCTTCGGAGAAATCCCAACATGGTTTGATT-CTTCCCCTAAAC
*
4092748 TTCAATACTTGTGTTTG
452 TTCAATGCTTGTGTTTG
* * *
4092765 AGCTATAACAATCTTGTAGGTGAGATGCCATCATATATGTTTGATCATCTACCTGGATTGCAAGA
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
*
4092830 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGAGTTTATTCAAGTGCAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
4092895 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
* * *
4092960 ACAATGCTTAGGAGTCT-ATCTCTCGTCAACAACTTGATTGAAGGTAAAC-AAAAGGCATTTGGA
196 ACAATGCTTAGGAGTCTAATCTC-AG-CAACAACCTGATTGAAGGTAAACGAAAA-GCATTTAGA
* * * *
4093023 TGCTATTTTAAATAGCTTATTTTGATTTGTTGTCTTGCTCCAACTGTAACATCCGTTTTGTTTGG
258 TGCTATTTTAATTAGATTATTTTAATTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTGTTTGG
* *
4093088 TAAGAAAGCTTCAATTCTTTTCTTTTTTTTTATCAAGTAAAATCGTAAAGTTCTTCTTTTAAACT
323 TAAGAAAGCTTCAATTCTTTTC--TTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACT
* * * * *
4093153 TATAAACTAGTTTTTTTAATAATTTCTTCGGAGGAATCCCAACATGGTTTGATTCTTCCCTTAGA
386 TATAAACTTGTTTTTTTAACAATTTCTTCGGAGAAATCCCAACATGGTTTGATTCTTCCCCTAAA
4093218 CTTCAATGCTTGTGTTTG
451 CTTCAATGCTTGTGTTTG
* * * *
4093236 AGCTTTACCAATCTTGCAGGTGAGATGTCGTCAGATATGTTTGATCATCTACCTAGATTGCAAGA
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
* *
4093301 GCTTTACTTGGGTAGAAACAAGCTCTCTGGCAAAATTCCATGGGGTTTATTCAAGTGCAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
* *
4093366 TAGAGGACATGGACTTCAGTTATAATAGTTTGGAAGGGATTCTTCCAAAAGAAATAGGAAACTTG
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
* * *
4093431 ACAATGCTTAGGAGTCT-ATCTCTTGTCAACAACCTGATTGAAGGTAAACGAAAAGCATCTGGAT
196 ACAATGCTTAGGAGTCTAATCTC-AG-CAACAACCTGATTGAAGGTAAACGAAAAGCATTTAGAT
** * * *
4093495 GCTATTTCGATTAGGTTATTTTAATTAGTTGTCTTGCTGCAACTGTAACATCCGCTTTGTTTGGT
259 GCTATTTTAATTAGATTATTTTAATTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTGTTTGGT
4093560 AAGAAAGCTTCAATTCTTTTCTTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTAT
324 AAGAAAGCTTCAATTCTTTTCTTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTAT
* * *
4093625 AAACTTGTTTTTTTTAATAATTTCTTCGGAGGAATCCCAACATGGTTTGATTCTTCCCCTAGACT
389 AAACTTG-TTTTTTTAACAATTTCTTCGGAGAAATCCCAACATGGTTTGATTCTTCCCCTAAACT
4093690 TCAATGCTTGTGTTTG
453 TCAATGCTTGTGTTTG
* * * **
4093706 AGCTTTACCAATCTTACAGGTGAGATGCTGTCAGATATGTTTGATCATCTACCTAGATTGCAAGA
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
4093771 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
* *
4093836 TAGAGGACATGGACTTCAGTTATAATAGTTTGGAAGGGATTCTTCCAAAAGAAATAGGAAACTTG
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
** * *
4093901 ACAATGCTTAGGAGTCTAGATCTCAGCCGCAACCTGGTTGAAGGTAAACGAGAAGCATTTAGATG
196 ACAATGCTTAGGAGTCTA-ATCTCAGCAACAACCTGATTGAAGGTAAACGAAAAGCATTTAGATG
* * *
4093966 CTATTTTAATTAGCTTATTTTAATTAGTTGTCTTGCTCCAACTGTAATATCCGCTTTGTTTGGTA
260 CTATTTTAATTAGATTATTTTAATTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTGTTTGGTA
* *
4094031 AGAAAGCTTCAATTCTTTTCTCTATTTTACCAAATAAAATCTTAAAGTTCTTC-TTTAAACTTAT
325 AGAAAGCTTCAATTCTTTTCT-TTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTAT
* * *
4094095 AAACTTG-TTTTTTAACAATTTCTAT-GGAGAAATCCCATCATGGTTTGATTCTTTCACTAAACT
389 AAACTTGTTTTTTTAACAATTTCT-TCGGAGAAATCCCAACATGGTTTGATTCTTCCCCTAAACT
*
4094158 TCAATGTTTGTGTTTG
453 TCAATGCTTGTGTTTG
*
4094174 AGCTATAACAATCTTGTAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
*
4094239 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGAGTTTATTCAAGTGCAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
** *
4094304 TAGAGGGGATAGACTTCAGTTATAATAGGTTGGAA-GGATTTCTACCAAAAGAAATAGGAAACTT
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGA-TTCTACCAAAAGAAATAGGAAACTT
* * * * * * *
4094368 GACAATGCTTAGTACTCTAGATCTCAGCGACAACCTGATCGAAGGTAAATGGAACGCATTTAGAT
195 GACAATGCTTAGGAGTCTA-ATCTCAGCAACAACCTGATTGAAGGTAAACGAAAAGCATTTAGAT
* * * *
4094433 GCTATTTTAATCAGATTATTTTAATTTTTTTGTCTTGCTCCAACTGTAACGTCCGCTATGTTTGG
259 GCTATTTTAATTAGATTATTTTAA-TTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTGTTTGG
** *
4094498 TAAGAAAGCTTCAATTCTTTTCTTTTTTTTTTTCAAGCAAAATCTTAAAGTTCTTC---T----T
323 TAAGAAAGCTTCAATTCTTTTC--TTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACT
* * * * * * * *
4094556 T-TAAACTTGTCTTTTTAACAATTTCTACTGAGAAATCTCATCGTGGTTTGATTCTTTCACTAAA
386 TATAAACTTGTTTTTTTAACAATTTCTTCGGAGAAATCCCAACATGGTTTGATTCTTCCCCTAAA
* *
4094620 GTTCAATGCTTTTGTTTG
451 CTTCAATGCTTGTGTTTG
*
4094638 AGCTATAACAATCTTGCAGGTGAGATGCCATCATATATGTTTGATCATCTACCTAGATTGCAAGA
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
* *
4094703 GCTTTACTTGGGTAGGAACAAGCTCTCTGACAAAATTCCATTGGGTTTATTTAAGTGCAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
*
4094768 TAGAGGACATAGACTTCAGTTATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
** * *
4094833 ACAATGCTTAGGAGTCTAAATCTCAGCGGCAACCTGATCGAAGGTAAAC-AAAACGCGTTTAGAT
196 ACAATGCTTAGGAGTCT-AATCTCAGCAACAACCTGATTGAAGGTAAACGAAAA-GCATTTAGAT
* * * * * * *
4094897 GGTTTTTTTAATTAGATTATTTTAATTTTTTGTCTTTCTCCAACTGCAATATCCCCTTTGTTTGG
259 -GCTATTTTAATTAGATTATTTTAATTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTGTTTGG
* *
4094962 TAAGAAAGTTTGAATTCTTTTC
323 TAAGAAAGCTTCAATTCTTTTC
4094984 CTTTCTGTTT
Statistics
Matches: 2032, Mismatches: 152, Indels: 61
0.91 0.07 0.03
Matches are distributed among these distances:
454 3 0.00
455 238 0.12
456 1 0.00
458 1 0.00
463 10 0.00
464 355 0.17
465 25 0.01
466 1 0.00
467 4 0.00
468 320 0.16
469 169 0.08
470 459 0.23
471 437 0.22
472 9 0.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (468 bp):
AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
ACAATGCTTAGGAGTCTAATCTCAGCAACAACCTGATTGAAGGTAAACGAAAAGCATTTAGATGC
TATTTTAATTAGATTATTTTAATTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTGTTTGGTAA
GAAAGCTTCAATTCTTTTCTTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTATAA
ACTTGTTTTTTTAACAATTTCTTCGGAGAAATCCCAACATGGTTTGATTCTTCCCCTAAACTTCA
ATGCTTGTGTTTG
Found at i:4094528 original size:941 final size:935
Alignment explanation
Indices: 4092310--4094983 Score: 3916
Period size: 941 Copynumber: 2.9 Consensus size: 935
4092300 TTTCTTAACA
4092310 AGCTTTAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
1 AGCTTTAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
* *
4092375 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTTAAATGCAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
*
4092440 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTT-TACCAAAAGAAATAGGAAACAT
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTTCTACCAAAAGAAATAGGAAACTT
4092504 GACAATGCTTAGGAGTCTATCTCTTGTCAACAACCTGATTGAAGGTAAAT-GAACAGCATTTG--
196 GACAATGCTTAGGAGTCTATCTCTTGTCAACAACCTGATTGAAGGTAAATGGAAC-GCATTTGAT
* * ***
4092566 G------AT-GTTATTTTAATTTGTTGTCTTGCTCCAACTATAATATTTACTTTGTTTGGTAAGA
260 GCTATTTATAGTTATTTTAATTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTGTTTGGTAAGA
* *
4092624 AAGCTTCTATTCTTTTCTCTTTTTTACCAAGTAAAATCTT-AAGTTCTTCTTTTAGACTTATAAA
325 AAGCTTCAATTCTTTTCTTTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTA-ACTTATAAA
* * *
4092688 CCTGTTTTTTTAACAATTTCTGCGGAGAAATCCCAACATGGTTTGATTCCTTCCGTAAACTTCAA
389 CTTGTTTTTTTAACAATTTCTACGGAGAAATCCCAACATGGTTTGATT-CTTCCCTAAACTTCAA
* *
4092753 TACTTGTGTTTGAGCTATAACAATCTTGTAGGTGAGATGCCATCATATATGTTTGATCATCTACC
453 TGCTTGTGTTTGAGCTATAACAATCTTGCAGGTGAGATGCCATCATATATGTTTGATCATCTACC
* *
4092818 TGGATTGCAAGAGCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGAGTTTATTCA
518 TAGATTGCAAGAGCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCA
4092883 AGTGCAAAGAGTTAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAA
583 AGTGCAAAGAGTTAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAA
** * *
4092948 ATAGGAAACTTGACAATGCTTAGGAGTCTATCTCTC-GTCAACAACTTGATTGAAGGTAAACAAA
648 ATAGGAAACTTGACAATGCTTAGGAGTCTAAATCTCAG-CAGCAACCTGATTGAAGGTAAACAAA
* * * * *
4093012 AGGCATTTGGATGCTATTTTAAATAGCTTATTTTGATTTGTTGTCTTGCTCCAACTGTAACATCC
712 ACGCATTTAGATGCTATTTTAATTAGCTTATTTTAATTTGTTGTCTTGCTCCAACTGTAATATCC
* * * * *
4093077 GTTTTGTTTGGTAAGAAAGCTTCAATTCTTTTCTTTTTTTTTATCAAGTAAAATCGTAAAGTTCT
777 GCTTTGTTTGGTAAGAAAGCTTCAATTCTTTTCTTCTATTTTACCAAATAAAATCGTAAAGTTCT
* *
4093142 TCTTTTAAACTTATAAACTAGTTTTTTTAATAATTTCTTCGGAGGAATCCCAACATGGTTTGATT
842 TCTTTTAAACTTATAAACTAGTTTTTTTAACAATTTCTTCGGAGAAATCCCAACATGGTTTGATT
* *
4093207 CTTCCCTTAGACTTCAATGCTTGTGTTTG
907 CTTCACTTAAACTTCAATGCTTGTGTTTG
* * *
4093236 AGCTTTACCAATCTTGCAGGTGAGATGTCGTCAGATATGTTTGATCATCTACCTAGATTGCAAGA
1 AGCTTTAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
* *
4093301 GCTTTACTTGGGTAGAAACAAGCTCTCTGGCAAAATTCCATGGGGTTTATTCAAGTGCAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
* *
4093366 TAGAGGACATGGACTTCAGTTATAATAGTTTGGAAGGGA-TTCTTCCAAAAGAAATAGGAAACTT
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTTCTACCAAAAGAAATAGGAAACTT
* * * *
4093430 GACAATGCTTAGGAGTCTATCTCTTGTCAACAACCTGATTGAAGGTAAACGAAAAGCATCTGGAT
196 GACAATGCTTAGGAGTCTATCTCTTGTCAACAACCTGATTGAAGGTAAATGGAACGCAT-TTGAT
* *
4093495 GCTATTTCGATTAGGTTATTTTAATTAGTTGTCTTGCTGCAACTGTAACATCCGCTTTGTTTGGT
260 GCTATTT--A-TA-GTTATTTTAATTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTGTTTGGT
4093560 AAGAAAGCTTCAATTCTTTTC-TTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTA
321 AAGAAAGCTTCAATTCTTTTCTTTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTT-AACTTA
* * * *
4093624 TAAACTTGTTTTTTTTAATAATTTCTTCGGAGGAATCCCAACATGGTTTGATTCTTCCCCTAGAC
385 TAAACTTG-TTTTTTTAACAATTTCTACGGAGAAATCCCAACATGGTTTGATTCTT-CCCTAAAC
* * * ** *
4093689 TTCAATGCTTGTGTTTGAGCTTTACCAATCTTACAGGTGAGATGCTGTCAGATATGTTTGATCAT
448 TTCAATGCTTGTGTTTGAGCTATAACAATCTTGCAGGTGAGATGCCATCATATATGTTTGATCAT
4093754 CTACCTAGATTGCAAGAGCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTT
513 CTACCTAGATTGCAAGAGCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTT
* *
4093819 ATTCAAGTGCAAAGAGTTAGAGGACATGGACTTCAGTTATAATAGTTTGGAAGGGATTCTTCCAA
578 ATTCAAGTGCAAAGAGTTAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAA
* * *
4093884 AAGAAATAGGAAACTTGACAATGCTTAGGAGTCTAGATCTCAGCCGCAACCTGGTTGAAGGTAAA
643 AAGAAATAGGAAACTTGACAATGCTTAGGAGTCTAAATCTCAGCAGCAACCTGATTGAAGGTAAA
* *
4093949 CGAGAA-GCATTTAGATGCTATTTTAATTAGCTTATTTTAATTAGTTGTCTTGCTCCAACTGTAA
708 C-AAAACGCATTTAGATGCTATTTTAATTAGCTTATTTTAATTTGTTGTCTTGCTCCAACTGTAA
*
4094013 TATCCGCTTTGTTTGGTAAGAAAGCTTCAATTCTTTTC-TCTATTTTACCAAATAAAATCTTAAA
772 TATCCGCTTTGTTTGGTAAGAAAGCTTCAATTCTTTTCTTCTATTTTACCAAATAAAATCGTAAA
* *
4094077 GTTCTTC-TTTAAACTTATAAACTTG-TTTTTTAACAATTTCTAT-GGAGAAATCCCATCATGGT
837 GTTCTTCTTTTAAACTTATAAACTAGTTTTTTTAACAATTTCT-TCGGAGAAATCCCAACATGGT
*
4094139 TTGATTCTTTCAC-TAAACTTCAATGTTTGTGTTTG
901 TTGATTC-TTCACTTAAACTTCAATGCTTGTGTTTG
* *
4094174 AGCTATAACAATCTTGTAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
1 AGCTTTAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
*
4094239 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGAGTTTATTCAAGTGCAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
** *
4094304 TAGAGGGGATAGACTTCAGTTATAATAGGTTGGAA-GGATTTCTACCAAAAGAAATAGGAAACTT
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTTCTACCAAAAGAAATAGGAAACTT
* * * * *
4094368 GACAATGCTTAGTACTCTAGATCTC-AG-CGACAACCTGATCGAAGGTAAATGGAACGCATTTAG
196 GACAATGCTTAGGAGTCT--ATCTCTTGTCAACAACCTGATTGAAGGTAAATGGAACGCATTT-G
* * *
4094431 ATGCTATTTTAATCAGATTATTTTAATTTTTTTGTCTTGCTCCAACTGTAACGTCCGCTATGTTT
258 ATGCTA-TTT-AT-AG-TTATTTTAA-TTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTGTTT
** *
4094496 GGTAAGAAAGCTTCAATTCTTTTCTTTTTTTTTTTCAAGCAAAATCTTAAAGTTCTTC---T---
318 GGTAAGAAAGCTTCAATTCTTTTC-TTTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAC
* * * * * *
4094555 TT-TAAACTTGTCTTTTTAACAATTTCTACTGAGAAATCTCATCGTGGTTTGATTCTTTCACTAA
382 TTATAAACTTGTTTTTTTAACAATTTCTACGGAGAAATCCCAACATGGTTTGATTC-TTCCCTAA
* *
4094619 AGTTCAATGCTTTTGTTTGAGCTATAACAATCTTGCAGGTGAGATGCCATCATATATGTTTGATC
446 ACTTCAATGCTTGTGTTTGAGCTATAACAATCTTGCAGGTGAGATGCCATCATATATGTTTGATC
*
4094684 ATCTACCTAGATTGCAAGAGCTTTACTTGGGTAGGAACAAGCTCTCTGACAAAATTCCATTGGGT
511 ATCTACCTAGATTGCAAGAGCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGT
* *
4094749 TTATTTAAGTGCAAAGAGTTAGAGGACATAGACTTCAGTTATAATAGGTTGGAAGGGATTCTACC
576 TTATTCAAGTGCAAAGAGTTAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACC
* *
4094814 AAAAGAAATAGGAAACTTGACAATGCTTAGGAGTCTAAATCTCAGCGGCAACCTGATCGAAGGTA
641 AAAAGAAATAGGAAACTTGACAATGCTTAGGAGTCTAAATCTCAGCAGCAACCTGATTGAAGGTA
* * * * * * *
4094879 AACAAAACGCGTTTAGATGGTTTTTTTAATTAGATTATTTTAATTTTTTGTCTTTCTCCAACTGC
706 AACAAAACGCATTTAGAT-GCTATTTTAATTAGCTTATTTTAATTTGTTGTCTTGCTCCAACTGT
* * *
4094944 AATATCCCCTTTGTTTGGTAAGAAAGTTTGAATTCTTTTC
770 AATATCCGCTTTGTTTGGTAAGAAAGCTTCAATTCTTTTC
4094984 CTTTCTGTTT
Statistics
Matches: 1575, Mismatches: 136, Indels: 67
0.89 0.08 0.04
Matches are distributed among these distances:
925 2 0.00
926 234 0.15
927 4 0.00
929 1 0.00
931 3 0.00
932 296 0.19
933 86 0.05
934 2 0.00
937 7 0.00
938 299 0.19
939 104 0.07
940 125 0.08
941 408 0.26
942 4 0.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (935 bp):
AGCTTTAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTTCTACCAAAAGAAATAGGAAACTT
GACAATGCTTAGGAGTCTATCTCTTGTCAACAACCTGATTGAAGGTAAATGGAACGCATTTGATG
CTATTTATAGTTATTTTAATTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTGTTTGGTAAGAA
AGCTTCAATTCTTTTCTTTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAACTTATAAACT
TGTTTTTTTAACAATTTCTACGGAGAAATCCCAACATGGTTTGATTCTTCCCTAAACTTCAATGC
TTGTGTTTGAGCTATAACAATCTTGCAGGTGAGATGCCATCATATATGTTTGATCATCTACCTAG
ATTGCAAGAGCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGT
GCAAAGAGTTAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATA
GGAAACTTGACAATGCTTAGGAGTCTAAATCTCAGCAGCAACCTGATTGAAGGTAAACAAAACGC
ATTTAGATGCTATTTTAATTAGCTTATTTTAATTTGTTGTCTTGCTCCAACTGTAATATCCGCTT
TGTTTGGTAAGAAAGCTTCAATTCTTTTCTTCTATTTTACCAAATAAAATCGTAAAGTTCTTCTT
TTAAACTTATAAACTAGTTTTTTTAACAATTTCTTCGGAGAAATCCCAACATGGTTTGATTCTTC
ACTTAAACTTCAATGCTTGTGTTTG
Found at i:4095630 original size:35 final size:35
Alignment explanation
Indices: 4095575--4095646 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
4095565 ACTCGGCTTC
*
4095575 AATTCTATTAAAGGACTAGTTTACTATTAAAATTG
1 AATTCTACTAAAGGACTAGTTTACTATTAAAATTG
* * *
4095610 AATTCTACTAATGGAGTAGTTTACTTTTAAAATTG
1 AATTCTACTAAAGGACTAGTTTACTATTAAAATTG
4095645 AA
1 AA
4095647 AAGTTTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.40
Consensus pattern (35 bp):
AATTCTACTAAAGGACTAGTTTACTATTAAAATTG
Found at i:4098098 original size:41 final size:40
Alignment explanation
Indices: 4097990--4098128 Score: 179
Period size: 40 Copynumber: 3.5 Consensus size: 40
4097980 ACAGAAAACG
* * ** * *
4097990 CCGCAAAAAGTAGGGCAATAGCGGCGCTTTTCCATAAGCG
1 CCGCAAAAGGTAGGGCAATAGCGGCGCTTATGGAAAAGCA
* *
4098030 CTGCAAAAGGTAGGGCAATAGCGGCGCTTATGGGAAAGCA
1 CCGCAAAAGGTAGGGCAATAGCGGCGCTTATGGAAAAGCA
* *
4098070 CCGCTAAAGGTCAGGGCAATAGCGGCGCTTATGGAAAAGCG
1 CCGCAAAAGGT-AGGGCAATAGCGGCGCTTATGGAAAAGCA
4098111 CCGCAAAAGGTAGGGCAA
1 CCGCAAAAGGTAGGGCAA
4098129 CCGTGGGTAG
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 48 0.56
41 37 0.44
ACGTcount: A:0.32, C:0.22, G:0.32, T:0.14
Consensus pattern (40 bp):
CCGCAAAAGGTAGGGCAATAGCGGCGCTTATGGAAAAGCA
Found at i:4098201 original size:40 final size:41
Alignment explanation
Indices: 4098156--4098252 Score: 124
Period size: 40 Copynumber: 2.4 Consensus size: 41
4098146 AGGTCAAAGA
* * *
4098156 AATAGTGGCGTTTATGGGTAAGCGCCGCAAAAGAT-AGGGC
1 AATAGTGGCGCTTATGGGGAAGCGCAGCAAAAGATCAGGGC
* * *
4098196 AATAGTGACGCTTATGGGGAAGCGCAGCTAAAGGTCAGGGC
1 AATAGTGGCGCTTATGGGGAAGCGCAGCAAAAGATCAGGGC
*
4098237 AATAGCGGCGCTTATG
1 AATAGTGGCGCTTATG
4098253 AAGAAGCTCA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 29 0.60
41 19 0.40
ACGTcount: A:0.29, C:0.16, G:0.35, T:0.20
Consensus pattern (41 bp):
AATAGTGGCGCTTATGGGGAAGCGCAGCAAAAGATCAGGGC
Found at i:4099110 original size:20 final size:21
Alignment explanation
Indices: 4099061--4099110 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
4099051 ATTTCCTAAC
* * *
4099061 CCTTGGTTCTCTTTAGTTTCT
1 CCTTTGTTCTCTTCAGATTCT
4099082 CCTTT-TTCTCTTCAGATT-T
1 CCTTTGTTCTCTTCAGATTCT
4099101 CCTTTGTTCT
1 CCTTTGTTCT
4099111 ATTACCCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 6 0.24
20 15 0.60
21 4 0.16
ACGTcount: A:0.06, C:0.26, G:0.10, T:0.58
Consensus pattern (21 bp):
CCTTTGTTCTCTTCAGATTCT
Found at i:4102283 original size:43 final size:42
Alignment explanation
Indices: 4102195--4102325 Score: 183
Period size: 43 Copynumber: 3.1 Consensus size: 42
4102185 TGTTAATGGT
* * * *
4102195 GTTTGTGGAAAAGTGTCGGTAAAGAACATG-TCTTTAGCGGT
1 GTTTGTGGAAAAGTGCCGCTAAAGACCATGTTCTTTAGCGGC
* *
4102236 GTTTGTGAGAAAAGCGCCGCTAAAGACCACGTTCTTTAGCGGC
1 GTTTGTG-GAAAAGTGCCGCTAAAGACCATGTTCTTTAGCGGC
4102279 GTTTGTGGGAAAAGTGCCGCTAAAGACCATGTTCTTTAGCGGC
1 GTTTGT-GGAAAAGTGCCGCTAAAGACCATGTTCTTTAGCGGC
4102322 GTTT
1 GTTT
4102326 CTCCTCATAA
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
41 7 0.09
42 18 0.23
43 53 0.67
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (42 bp):
GTTTGTGGAAAAGTGCCGCTAAAGACCATGTTCTTTAGCGGC
Found at i:4110581 original size:69 final size:68
Alignment explanation
Indices: 4110501--4110723 Score: 383
Period size: 69 Copynumber: 3.2 Consensus size: 68
4110491 ACTGAAGTTA
*
4110501 ATCTTTCCAATAACAAGTTAAGGCAATTCCCCAGTTTCTTGCGATCTGCAGAAAGCTTGATAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGC-GAAAGCTTGATAAGT
4110566 CTTG
65 CTTG
4110570 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGGAAAGCTTGATAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGC-GAAAGCTTGATAAGT
4110635 CTTG
65 CTTG
* *
4110639 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGAAAAGTTTGAGAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCG-AAAGCTTGATAAGT
4110704 CTTG
65 CTTG
*
4110708 ATCTGTCCAATAACAA
1 ATCTTTCCAATAACAA
4110724 AATTCAAGGT
Statistics
Matches: 148, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
68 1 0.01
69 147 0.99
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (68 bp):
ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGAAAGCTTGATAAGTC
TTG
Found at i:4113166 original size:11 final size:11
Alignment explanation
Indices: 4113136--4113160 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4113126 CCAAACCATT
4113136 TTTACCAATAA
1 TTTACCAATAA
4113147 TTTACCAATAA
1 TTTACCAATAA
4113158 TTT
1 TTT
4113161 TTCAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (11 bp):
TTTACCAATAA
Found at i:4115541 original size:19 final size:20
Alignment explanation
Indices: 4115504--4115542 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
4115494 CTAGTACTCC
4115504 TTTATCTTTCTTGTCTTTCT
1 TTTATCTTTCTTGTCTTTCT
* *
4115524 TTTATTTTTGTTGT-TTTCT
1 TTTATCTTTCTTGTCTTTCT
4115543 CAATTTAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.05, C:0.13, G:0.08, T:0.74
Consensus pattern (20 bp):
TTTATCTTTCTTGTCTTTCT
Found at i:4118119 original size:69 final size:68
Alignment explanation
Indices: 4118039--4118261 Score: 383
Period size: 69 Copynumber: 3.2 Consensus size: 68
4118029 ACTGAAGTTA
*
4118039 ATCTTTCCAATAACAAGTTAAGGCAATTCCCCAGTTTCTTGCGATCTGCAGAAAGCTTGATAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGC-GAAAGCTTGATAAGT
4118104 CTTG
65 CTTG
4118108 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGGAAAGCTTGATAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGC-GAAAGCTTGATAAGT
4118173 CTTG
65 CTTG
* *
4118177 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGAAAAGTTTGAGAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCG-AAAGCTTGATAAGT
4118242 CTTG
65 CTTG
*
4118246 ATCTGTCCAATAACAA
1 ATCTTTCCAATAACAA
4118262 AATTCAGGGT
Statistics
Matches: 148, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
68 1 0.01
69 147 0.99
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (68 bp):
ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGAAAGCTTGATAAGTC
TTG
Found at i:4127761 original size:16 final size:16
Alignment explanation
Indices: 4127739--4127784 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
4127729 GATGATGTCA
4127739 TTATTTTTCT-TTTCT
1 TTATTTTTCTATTTCT
4127754 TCTATTTTTCTATTTCT
1 T-TATTTTTCTATTTCT
*
4127771 TTGTTTTTCTATTT
1 TTATTTTTCTATTT
4127785 TATACCCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 1 0.04
16 21 0.75
17 6 0.21
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (16 bp):
TTATTTTTCTATTTCT
Found at i:4127764 original size:8 final size:8
Alignment explanation
Indices: 4127740--4127785 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
4127730 ATGATGTCAT
4127740 TATTTTTC
1 TATTTTTC
4127748 T-TTTCTTC
1 TATTT-TTC
4127756 TATTTTTC
1 TATTTTTC
4127764 TATTTCTT-
1 TATTT-TTC
*
4127772 TGTTTTTC
1 TATTTTTC
4127780 TATTTT
1 TATTTT
4127786 ATACCCTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
7 5 0.16
8 22 0.69
9 5 0.16
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (8 bp):
TATTTTTC
Found at i:4128736 original size:37 final size:37
Alignment explanation
Indices: 4128686--4128760 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
4128676 GTTAAATATA
4128686 AAATTAATATTTGAACTTGTCCACTTCTTTCAGATTG
1 AAATTAATATTTGAACTTGTCCACTTCTTTCAGATTG
*
4128723 AAATTAGTATTTGAACTTGTCCACTTCTTTCAGATTG
1 AAATTAATATTTGAACTTGTCCACTTCTTTCAGATTG
4128760 A
1 A
4128761 TACTTCTGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (37 bp):
AAATTAATATTTGAACTTGTCCACTTCTTTCAGATTG
Found at i:4129456 original size:19 final size:20
Alignment explanation
Indices: 4129419--4129457 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
4129409 CTAGTACTCC
4129419 TTTATCTTTCTTGTCTTTCT
1 TTTATCTTTCTTGTCTTTCT
* *
4129439 TTTATTTTTGTTGT-TTTCT
1 TTTATCTTTCTTGTCTTTCT
4129458 CAATTTAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.05, C:0.13, G:0.08, T:0.74
Consensus pattern (20 bp):
TTTATCTTTCTTGTCTTTCT
Found at i:4132085 original size:69 final size:69
Alignment explanation
Indices: 4131974--4132127 Score: 263
Period size: 69 Copynumber: 2.2 Consensus size: 69
4131964 ACTGAAGTTA
* * * *
4131974 ATCTTTCCAATATCAAGTTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGGAAAGCTTGATAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGAAAAGCTTGAGAAGT
4132039 CTTG
66 CTTG
*
4132043 ATCTTTCCAATAACAAGCTAAGGCAATTCCCGAGTTTCTTGCGATCTGCGAAAAGCTTGAGAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGAAAAGCTTGAGAAGT
4132108 CTTG
66 CTTG
4132112 ATCTTTCCAATAACAA
1 ATCTTTCCAATAACAA
4132128 AATTCAGGGT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 80 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (69 bp):
ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGAAAAGCTTGAGAAGT
CTTG
Found at i:4137699 original size:75 final size:75
Alignment explanation
Indices: 4137538--4137700 Score: 195
Period size: 75 Copynumber: 2.2 Consensus size: 75
4137528 ATCTGATCGA
* * *
4137538 ACTTGATCTTTCATCAAATAATTTCAGTGGTGTCATCAAGTCAGATATGCTTTTAAAGTTGAAGA
1 ACTTGATCTTTCATCAAATAATTTCAGTGGTGCCATCAAGTCAGATATGCTTTCAAAGCTGAAGA
4137603 ACCTTGAAAC
66 ACCTTGAAAC
* * * * *
4137613 AC-TCATTCTTTCGTCAAATAATTTTAGTGGTGCCATCAAGTTAGATGTGCTTTCAAAGCTGAAG
1 ACTTGA-TCTTTCATCAAATAATTTCAGTGGTGCCATCAAGTCAGATATGCTTTCAAAGCTGAAG
*
4137677 AATCTT-ACAAC
65 AACCTTGA-AAC
* *
4137688 GCTTGAGCTTTCA
1 ACTTGATCTTTCA
4137701 AATAACAAGT
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
74 3 0.04
75 67 0.93
76 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35
Consensus pattern (75 bp):
ACTTGATCTTTCATCAAATAATTTCAGTGGTGCCATCAAGTCAGATATGCTTTCAAAGCTGAAGA
ACCTTGAAAC
Found at i:4138947 original size:31 final size:31
Alignment explanation
Indices: 4138910--4138968 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
4138900 TTTTTTTGGT
*
4138910 CTAATTTGGTACTCAAACTTGACACTTTTTC
1 CTAATTTGGTACCCAAACTTGACACTTTTTC
4138941 CTAATTTGGTACCCAAACTTGACACTTT
1 CTAATTTGGTACCCAAACTTGACACTTT
4138969 ATTTTAAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (31 bp):
CTAATTTGGTACCCAAACTTGACACTTTTTC
Found at i:4138981 original size:31 final size:31
Alignment explanation
Indices: 4138910--4138981 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
4138900 TTTTTTTGGT
* *
4138910 CTAATTTGGTACTCAAACTTGACACTTTTTC
1 CTAAGTTGGTACCCAAACTTGACACTTTTTC
*
4138941 CTAATTTGGTACCCAAACTTGACACTTTATT-
1 CTAAGTTGGTACCCAAACTTGACACTTT-TTC
*
4138972 TTAAGTTGGT
1 CTAAGTTGGT
4138982 GCTTCAACTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 35 0.95
32 2 0.05
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.42
Consensus pattern (31 bp):
CTAAGTTGGTACCCAAACTTGACACTTTTTC
Found at i:4139304 original size:59 final size:59
Alignment explanation
Indices: 4139238--4139382 Score: 154
Period size: 60 Copynumber: 2.5 Consensus size: 59
4139228 GGCACTAAAT
* * *
4139238 GAAAAAAATACCAAGTTC-AGATACTAAATTGGGTCCAAAAAAAGTCTAGGTACCAAATTA
1 GAAAAAATTACCAAGTTCAAG-TACCAAATTGAGT-CAAAAAAAGTCTAGGTACCAAATTA
** * *
4139298 GAAAAAATTGTCAAGTTCAAGTACCAAATTGAGTCAAAAAATGTTTAGGTACCAAA-T-
1 GAAAAAATTACCAAGTTCAAGTACCAAATTGAGTCAAAAAAAGTCTAGGTACCAAATTA
* * *
4139355 -AAAAAAGTATCAAATTCAAGTACCAAAT
1 GAAAAAATTACCAAGTTCAAGTACCAAAT
4139383 ATTATATTAA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
56 25 0.34
58 1 0.01
59 20 0.27
60 26 0.35
61 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.23
Consensus pattern (59 bp):
GAAAAAATTACCAAGTTCAAGTACCAAATTGAGTCAAAAAAAGTCTAGGTACCAAATTA
Found at i:4139381 original size:56 final size:59
Alignment explanation
Indices: 4139216--4139382 Score: 157
Period size: 59 Copynumber: 2.9 Consensus size: 59
4139206 AATATAAAAA
* * * * * * *
4139216 AAAAAAAG-CTTAGGCACTAAATGAAAAAAA-TACCAAGTTC-AGATACTAAATTGGGTCC
1 AAAAAAAGTC-TAGGTACCAAATTAAAAAAAGTATCAAATTCAAG-TACCAAATTGAGTCC
* * *
4139274 AAAAAAAGTCTAGGTACCAAATTAGAAAAAATTGTCAAGTTCAAGTACCAAATTGAGT-C
1 AAAAAAAGTCTAGGTACCAAATTA-AAAAAAGTATCAAATTCAAGTACCAAATTGAGTCC
* *
4139333 AAAAAATGTTTAGGTACCAAA-T-AAAAAAGTATCAAATTCAAGTACCAAAT
1 AAAAAAAGTCTAGGTACCAAATTAAAAAAAGTATCAAATTCAAGTACCAAAT
4139383 ATTATATTAA
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
56 25 0.27
58 20 0.22
59 27 0.29
60 19 0.20
61 2 0.02
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.23
Consensus pattern (59 bp):
AAAAAAAGTCTAGGTACCAAATTAAAAAAAGTATCAAATTCAAGTACCAAATTGAGTCC
Found at i:4141025 original size:101 final size:101
Alignment explanation
Indices: 4140850--4141070 Score: 388
Period size: 101 Copynumber: 2.2 Consensus size: 101
4140840 ATCATTAAAG
* * *
4140850 AAAGATCATGACTATTGAAATTAATCGGATTTATCCTCAACATTAATGGTTGGAATTTGCAAGCG
1 AAAGACCATGACTACTGAAATTAATCGGATTTATCCTCAACATTAATGATTGGAATTTGCAAGCG
4140915 CGTGATGGAATAATGGGTGGAATGTTTGCGGGGAAC
66 CGTGATGGAATAATGGGTGGAATGTTTGCGGGGAAC
*
4140951 AAAGACCATGATTACTGAAATTAATCGGATTTATCCTCAACATTAATGATTGGAATTTGCAAGCG
1 AAAGACCATGACTACTGAAATTAATCGGATTTATCCTCAACATTAATGATTGGAATTTGCAAGCG
*
4141016 CGTGATGGAATAATGGGTGGAATGTTTGCGGGGAGC
66 CGTGATGGAATAATGGGTGGAATGTTTGCGGGGAAC
*
4141052 AAACACCATGACTACTGAA
1 AAAGACCATGACTACTGAA
4141071 TTTTATATTA
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 113 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (101 bp):
AAAGACCATGACTACTGAAATTAATCGGATTTATCCTCAACATTAATGATTGGAATTTGCAAGCG
CGTGATGGAATAATGGGTGGAATGTTTGCGGGGAAC
Found at i:4143392 original size:49 final size:48
Alignment explanation
Indices: 4143335--4143487 Score: 132
Period size: 51 Copynumber: 3.1 Consensus size: 48
4143325 TTAAACTCTT
*
4143335 TTATTTAATATTTATTTCTTATTAATTTAATTAATTAGAAATAAAATAA
1 TTATTTAATATTTATTTCTAATTAATTTAATTAATTAG-AATAAAATAA
* * *
4143384 TTATTTAATATTATAATT-TAATTAATTTAATTTTAATTAGTGATAATATAAA
1 TTATTTAATATT-TATTTCTAATTAATTTAA--TTAATTAG-AATAAAAT-AA
* * * * *
4143436 TT-TTTATTATTTATCTCTCCATTATTTTAAATTAAGTAGAA-AAAATAA
1 TTATTTAATATTTATTTCT-AATTAATTT-AATTAATTAGAATAAAATAA
4143484 TTAT
1 TTAT
4143488 GACGTGATAC
Statistics
Matches: 83, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
48 4 0.05
49 28 0.34
50 8 0.10
51 30 0.36
52 11 0.13
53 2 0.02
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.51
Consensus pattern (48 bp):
TTATTTAATATTTATTTCTAATTAATTTAATTAATTAGAATAAAATAA
Found at i:4143414 original size:22 final size:19
Alignment explanation
Indices: 4143381--4143421 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 19
4143371 AGAAATAAAA
4143381 TAATTATTTAATATTATAATT
1 TAATTATTTAAT-TT-TAATT
4143402 TAATTAATTTAATTTTAATT
1 TAATT-ATTTAATTTTAATT
4143422 AGTGATAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 7 0.37
22 7 0.37
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TAATTATTTAATTTTAATT
Found at i:4143443 original size:55 final size:49
Alignment explanation
Indices: 4143333--4143443 Score: 116
Period size: 49 Copynumber: 2.1 Consensus size: 49
4143323 AATTAAACTC
* *
4143333 TTTTATTTAATATTTATTTCTTATTAATTTAATTAATTAGAAATAAAAT
1 TTTTATTTAATATTTAATTCTAATTAATTTAATTAATTAGAAATAAAAT
**
4143382 AATTATTTAATATTATAATT-TAATTAATTTAATTTTAATTAGTGATAATATAAAT
1 TTTTATTTAATATT-TAATTCTAATTAATTTAA--TTAATTA--GA-AATA-AAAT
4143437 TTTTATT
1 TTTTATT
4143444 ATTTATCTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
49 23 0.47
50 4 0.08
51 7 0.14
53 2 0.04
54 4 0.08
55 9 0.18
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (49 bp):
TTTTATTTAATATTTAATTCTAATTAATTTAATTAATTAGAAATAAAAT
Found at i:4143588 original size:26 final size:30
Alignment explanation
Indices: 4143562--4143620 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
4143552 ATGAGACATA
4143562 ACATCAAATTAAAATTCATGTATATAATTAC
1 ACATCAAATTAAAATTCATG-ATATAATTAC
* *
4143593 ACATTAAATTAAAATTCATG-TATGATTA
1 ACATCAAATTAAAATTCATGATATAATTA
4143621 AACAATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 7 0.27
31 19 0.73
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.37
Consensus pattern (30 bp):
ACATCAAATTAAAATTCATGATATAATTAC
Found at i:4143630 original size:29 final size:30
Alignment explanation
Indices: 4143567--4143630 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
4143557 ACATAACATC
* *
4143567 AAATTAAAATTCATGTATATAATTACACATT
1 AAATTAAAATTCATG-ATATAATTAAACAAT
*
4143598 AAATTAAAATTCATG-TATGATTAAACAAT
1 AAATTAAAATTCATGATATAATTAAACAAT
4143627 AAAT
1 AAAT
4143631 GCGTAATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 15 0.50
31 15 0.50
ACGTcount: A:0.52, C:0.08, G:0.05, T:0.36
Consensus pattern (30 bp):
AAATTAAAATTCATGATATAATTAAACAAT
Found at i:4150531 original size:452 final size:453
Alignment explanation
Indices: 4148478--4151154 Score: 3979
Period size: 451 Copynumber: 5.9 Consensus size: 453
4148468 CGATTGAAAT
* ** * * *
4148478 TTATAGACTTGTTTTTGAACAATTTCTATAGAGAAATCCCATCATCGTTTGATTCTTTCCCTTAA
1 TTATAGACTTGTTTTGGAACAATTTCTACGGAGAAATCCCATCATGGTTTGATTCCTTCCCTAAA
* *
4148543 CTTCAATACTTGTCTTTGACCTCTAACAATCTTGCAGGTGAGATTCCATCCAATATGTTTGATCA
66 CTTCAATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCA
* * *
4148608 TCTACCTAGATTGCAAGAGCTTTACTTGGAAGGGAACAAGCTCTCAGGCAAAATTCCATTGGGTT
131 TCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCATTGGGTT
* * *
4148673 TATTCAAGTGCAAAAAGTTAGAGAACATATCCTT-GATGGGTAATAGGTTGGAAGGGATTCTACC
196 TATTCAAGTGCAAAGAGTTAGAGAACATATCCTTGGCT-GATAATAGGTTGGAAGGGATTCTACC
* ** * *
4148737 AAAAGAAATAGGAAACTTGACAATGCTTAGGAGTCTACGTCTCGGCAGCAACCTGTTCGAAGGTA
260 AAAAGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCGACAACAACCTGTTCGAAGGTA
* *
4148802 AACGAAAATCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTT
325 AACGGAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTT
4148867 TGGTAAGAAAGCTTCAATTCTTTTCTTCTTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTA
390 TGGTAAGAAAGCTTCAATTC--TT-TTC-TTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTA
4148932 AAC
451 AAC
* *
4148935 TTATAGACTTGTTTTGGAACAATTTTTACGGAGAAATTCCATCATGGTTTGATTCCTTCCCTAAA
1 TTATAGACTTGTTTTGGAACAATTTCTACGGAGAAATCCCATCATGGTTTGATTCCTTCCCTAAA
* * * *
4149000 CTTCAATACTTATTTTTGAG------CAATCTTGTAGGTGAGATCCTATCCAATATGTTTGATCA
66 CTTCAATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCA
*
4149059 TCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCACTGGGTT
131 TCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCATTGGGTT
**
4149124 TATTCAAGTGCAAAGAGTTAGA-ATATTTATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACC
196 TATTCAAGTGCAAAGAGTTAGAGA-ACATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACC
* * * *
4149188 AAAAGAAATAGGAAACTTGACAATGCTCAGGAATCTATATCTCTACAACAACCTGTTCGAAGGTA
260 AAAAGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCGACAACAACCTGTTCGAAGGTA
* * * *
4149253 AACAGAAAGCAATTGAATATTATTTTAATTTGTTCTCTTTCTCCAACTGCAATATCTGCTTTGTT
325 AACGGAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTT
*
4149318 TGGTAAGAGAGCTTCAATTCTTTCTCTTTTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTA
390 TGGTAAGAAAGCTTCAATTCTTT-TC---TTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTA
4149383 AAC
451 AAC
* * * * *
4149386 TTATAGACTTGTTCTGGAACAATTTCTTCTGAGAAATCCCATTATGGTTTGATTTCTTCCCTAAA
1 TTATAGACTTGTTTTGGAACAATTTCTACGGAGAAATCCCATCATGGTTTGATTCCTTCCCTAAA
* * *
4149451 ATTCAATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAGTATGTTTGATCG
66 CTTCAATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCA
* *
4149516 TCTACCTAGATTGCAACAACTTTACTTGGAAGGGAACAAGCTCTCCGG-AAAATTTCCATTGAGT
131 TCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAA-TTCCATTGGGT
** *
4149580 TTATTCAAGTGCAAAGAGTTAGTA-TTCATATCCTTGGCTGATAATAGGTTGGAAGGGATTTTAC
195 TTATTCAAGTGCAAAGAGTTAG-AGAACATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTAC
* * *
4149644 CAAAAGAAATAGGAAACTTGACAATGCTTAGGAGTCTATATCTCTACAACAACCTGTTCAAAGGT
259 CAAAAGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCGACAACAACCTGTTCGAAGGT
* * * *
4149709 AAACGGAAAGCAGTTGAATATTATTTTAATTTGTTGTCTTTCTTCGACTGCAATATCTGCTCTGT
324 AAACGGAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGT
* * *
4149774 TTGGTAAGAAAGCTTCAATTCTTTT-ATTTTTTTATCTAGTAAAATTTTAAAGTTCATTTTAAAC
389 TTGGTAAGAAAGCTTCAATTCTTTTCTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTAAAC
* * *
4149838 -T-TAGACTTGTTTTGGAACAATTTCTTCGGAGAAATCCCATCATGGTTTGATTTCTTTCCTAAA
1 TTATAGACTTGTTTTGGAACAATTTCTACGGAGAAATCCCATCATGGTTTGATTCCTTCCCTAAA
*
4149901 CTTCAATACTTGTCTTTGAGCTCTAACAACCTTGCAGGTGAGATCCCATCCAATATGTTTGATCA
66 CTTCAATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCA
* * * *
4149966 TCTACCTGGATTGCAAGAGCTTTACTTGCAAGGGAACAAGCTCTCCGGTAAAATTCCACTGGGTT
131 TCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCATTGGGTT
* **
4150031 TATTCAAGTGCAAAGAGTTAGTGTTCATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACCA
196 TATTCAAGTGCAAAGAGTTAGAGAACATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACCA
* * *
4150096 AAAGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCTACAAAAACCTATTCGAAGGTAA
261 AAAGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCGACAACAACCTGTTCGAAGGTAA
* * * * *
4150161 ATGGAAAGCAGTTGGATGTTATTTTAATATGTTGTCTTTCTCCAACTTCAATATCTGTTTTGTTT
326 ACGGAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTTT
4150226 GGTAAGAAAGCTTCAATTCTTTTCTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTAAAC
391 GGTAAGAAAGCTTCAATTCTTTTCTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTAAAC
* * *
4150289 TTAAAGACTTGTTTTGGAACAATTTCTACGGAG-AATCCCATCATAGTTTGATTCCTTCCCTAAG
1 TTATAGACTTGTTTTGGAACAATTTCTACGGAGAAATCCCATCATGGTTTGATTCCTTCCCTAAA
* * *
4150353 CTTCAATATTTGTTTTTGAGCTCTAGCAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCA
66 CTTCAATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCA
* * *
4150418 TCTACCTGGATTGCAACAGCTTTACTTGCAAGGCAACAAGCTCTCCGGTAAAATTCCATTGGGTT
131 TCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCATTGGGTT
* * *
4150483 TATTCAAGTGCAAAGAGTTAGAGAACCTATCCTTGACTGGTAATAGGTTGGAAGGGATTCTACCA
196 TATTCAAGTGCAAAGAGTTAGAGAACATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACCA
*
4150548 AAAGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCGACAGCAACCTGTTCGAAGGTAA
261 AAAGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCGACAACAACCTGTTCGAAGGTAA
* *
4150613 ACGAAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCATTGTTT
326 ACGGAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTTT
*
4150678 GGTAAGAAAGCTTCAATTCTTTTCTTCTTTTTTTTACCAA--AGAA-TTTAAAGTTCATTTTAAA
391 GGTAAGAAAGCTTCAATTC--TT-TTCTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTAAA
4150740 C
453 C
* * *
4150741 TTATAGACTTATTTTGGAACAATTTCTACGG-GAAAATCTCATCATGGTTTGATTCCTCCCCTAA
1 TTATAGACTTGTTTTGGAACAATTTCTACGGAG-AAATCCCATCATGGTTTGATTCCTTCCCTAA
* * *
4150805 ACTTCAATACTTTGTGTTTGAGCTTTACCAATCTTGCAGGTGAGATCCCAT-CAGATATGTTTGA
65 ACTTCAATAC-TTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCA-ATATGTTTGA
* * ** * ** ** * *
4150869 TCATCTATCTAGATTACAAGTGCTTTTCTTGGGTGATAACAAGCTCTCTGGAAAAATTCCATTGG
128 TCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCATTGG
* *
4150934 GTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTCATAATAGGTTGGAAGGGATTCTA
193 GTTTATTCAAGTGCAAAGAGTTAGAGAACATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTA
4150999 CCAAAAGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCGACAACAACCTGTTCGAAGG
258 CCAAAAGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCGACAACAACCTGTTCGAAGG
*
4151064 TAAACGGAAAGCAGTTGAATGTTACTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTG
323 TAAACGGAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTG
* * *
4151129 TTTGGTAAAAAAGCTTTAATTTTTTT
388 TTTGGTAAGAAAGCTTCAATTCTTTT
4151155 TACCAAGTAA
Statistics
Matches: 2025, Mismatches: 170, Indels: 56
0.90 0.08 0.02
Matches are distributed among these distances:
448 1 0.00
449 4 0.00
450 376 0.19
451 446 0.22
452 436 0.22
453 68 0.03
454 306 0.15
455 16 0.01
456 5 0.00
457 366 0.18
458 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (453 bp):
TTATAGACTTGTTTTGGAACAATTTCTACGGAGAAATCCCATCATGGTTTGATTCCTTCCCTAAA
CTTCAATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCA
TCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCATTGGGTT
TATTCAAGTGCAAAGAGTTAGAGAACATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACCA
AAAGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCGACAACAACCTGTTCGAAGGTAA
ACGGAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTTT
GGTAAGAAAGCTTCAATTCTTTTCTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTAAAC
Found at i:4150642 original size:902 final size:901
Alignment explanation
Indices: 4148482--4151154 Score: 4010
Period size: 908 Copynumber: 3.0 Consensus size: 901
4148472 TGAAATTTAT
* * * *
4148482 AGACTTGTTTTTGAACAATTTCTATAGAGAAATCCCATCATCGTTTGATTCTTTCCCTTAACTTC
1 AGACTTGTTTTGGAACAATTTCTACAGAGAAATCCCATCATAGTTTGATTCCTTCCC-TAACTTC
* *
4148547 AATACTTGTCTTTGACCTCTAACAATCTTGCAGGTGAGATTCCATCCAATATGTTTGATCATCTA
65 AATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCATCTA
* *
4148612 CCTAGATTGCAAGAGCTTTACTTGGAAGGGAACAAGCTCTCAGGCAAAATTCCATTGGGTTTATT
130 CCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGG-AAAATTCCATTGGGTTTATT
*
4148677 CAAGTGCAAAAAGTTAGAGAACATATCCTTGA-TGGGTAATAGGTTGGAAGGGATTCTACCAAAA
194 CAAGTGCAAAGAGTTAGAGAACATATCCTTGACT-GGTAATAGGTTGGAAGGGATTCTACCAAAA
** *
4148741 GAAATAGGAAACTTGACAATGCTTAGGAGTCTACGTCTCGGCAGCAACCTGTTCGAAGGTAAACG
258 GAAATAGGAAACTTGACAATGCTTAGGAGTCTATATCTCGACAGCAACCTGTTCGAAGGTAAACG
*
4148806 AAAATCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTTTGGT
323 AAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGC-TTGTTTGGT
* * *
4148871 AAGAAAGCTTCAATTCTTTTCTTCTTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTAAACT
387 AAGAAAGCTTCAATTC---T-TT-TATTTTTTTATCTAGTAAAATTTTAAAGTTCATTTTAAACT
*
4148936 TATAGACTTGTTTTGGAACAATTT-TTACGGAGAAATTCCATCATGGTTTGATTCCTTCCCTAAA
447 TATAGACTTGTTTTGGAACAATTTCTT-CGGAGAAATCCCATCATGGTTTGATTCCTTCCCTAAA
* * * *
4149000 CTTCAATACTTATTTTTGAG----CAATCTTGTAGGTGAGATCCTATCCAATATGTTTGATCATC
511 CTTCAATACTTGTCTTTGAGCTTACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCATC
*
4149061 TACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCACTGGGTTTA
576 TACCTAGATTGCAAGAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCACTGGGTTTA
*
4149126 TTCAAGTGCAAAGAGTTAGAATATT--TATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACCA
641 TTCAAGTGCAAAGAGTTAG--TGTTCATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACCA
* * *
4149189 AAAGAAATAGGAAACTTGACAATGCTCAGGAATCTATATCTCTACAACAACCTGTTCGAAGGTAA
704 AAAGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCTACAACAACCTGTTCGAAGGTAA
* * * *
4149254 ACAGAAAGCAATTGAATATTATTTTAATTTGTTCTCTTTCTCCAACTGCAATATCTGCTTTGTTT
769 ACGGAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTTT
*
4149319 GGTAAGAGAGCTTCAATTCTTTCTCTTTTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTAA
834 GGTAAGAAAGCTTCAATTCTTT-TC--TTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTAA
*
4149384 ACTTAT
896 ACTTAA
* * * * * * *
4149390 AGACTTGTTCTGGAACAATTTCTTCTGAGAAATCCCATTATGGTTTGATTTCTTCCCTAAAATTC
1 AGACTTGTTTTGGAACAATTTCTACAGAGAAATCCCATCATAGTTTGATTCCTTCCCT-AACTTC
* *
4149455 AATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAGTATGTTTGATCGTCTA
65 AATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCATCTA
* *
4149520 CCTAGATTGCAACAACTTTACTTGGAAGGGAACAAGCTCTCCGGAAAATTTCCATTGAGTTTATT
130 CCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGGAAAA-TTCCATTGGGTTTATT
** * * *
4149585 CAAGTGCAAAGAGTTAGTA-TTCATATCCTTGGCTGATAATAGGTTGGAAGGGATTTTACCAAAA
194 CAAGTGCAAAGAGTTAG-AGAACATATCCTTGACTGGTAATAGGTTGGAAGGGATTCTACCAAAA
* * *
4149649 GAAATAGGAAACTTGACAATGCTTAGGAGTCTATATCTCTACAACAACCTGTTCAAAGGTAAACG
258 GAAATAGGAAACTTGACAATGCTTAGGAGTCTATATCTCGACAGCAACCTGTTCGAAGGTAAACG
* * * *
4149714 GAAAGCAGTTGAATATTATTTTAATTTGTTGTCTTTCTTCGACTGCAATATCTGCTCTGTTTGGT
323 AAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCT-TGTTTGGT
4149779 AAGAAAGCTTCAATTCTTTTATTTTTTTATCTAGTAAAATTTTAAAGTTCATTTTAAAC-T-TAG
387 AAGAAAGCTTCAATTCTTTTATTTTTTTATCTAGTAAAATTTTAAAGTTCATTTTAAACTTATAG
* *
4149842 ACTTGTTTTGGAACAATTTCTTCGGAGAAATCCCATCATGGTTTGATTTCTTTCCTAAACTTCAA
452 ACTTGTTTTGGAACAATTTCTTCGGAGAAATCCCATCATGGTTTGATTCCTTCCCTAAACTTCAA
*
4149907 TACTTGTCTTTGAGCTCTAACAACCTTGCAGGTGAGATCCCATCCAATATGTTTGATCATCTACC
517 TACTTGTCTTTGAGCT-T-ACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCATCTACC
* *
4149972 TGGATTGCAAGAGCTTTACTTGCAAGGGAACAAGCTCTCCGGTAAAATTCCACTGGGTTTATTCA
580 TAGATTGCAAGAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCACTGGGTTTATTCA
4150037 AGTGCAAAGAGTTAGTGTTCATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACCAAAAGAA
645 AGTGCAAAGAGTTAGTGTTCATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACCAAAAGAA
* * *
4150102 ATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCTACAAAAACCTATTCGAAGGTAAATGGAA
710 ATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCTACAACAACCTGTTCGAAGGTAAACGGAA
* * * *
4150167 AGCAGTTGGATGTTATTTTAATATGTTGTCTTTCTCCAACTTCAATATCTGTTTTGTTTGGTAAG
775 AGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTTTGGTAAG
4150232 AAAGCTTCAATTCTTTTC-TTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTAAACTTAA
840 AAAGCTTCAATTCTTTTCTTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTAAACTTAA
*
4150293 AGACTTGTTTTGGAACAATTTCTACGGAG-AATCCCATCATAGTTTGATTCCTTCCCTAAGCTTC
1 AGACTTGTTTTGGAACAATTTCTACAGAGAAATCCCATCATAGTTTGATTCCTTCCCTAA-CTTC
* * *
4150357 AATATTTGTTTTTGAGCTCTAGCAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCATCTA
65 AATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCATCTA
* * *
4150422 CCTGGATTGCAACAGCTTTACTTGCAAGGCAACAAGCTCTCCGGTAAAATTCCATTGGGTTTATT
130 CCTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGG-AAAATTCCATTGGGTTTATT
*
4150487 CAAGTGCAAAGAGTTAGAGAACCTATCCTTGACTGGTAATAGGTTGGAAGGGATTCTACCAAAAG
194 CAAGTGCAAAGAGTTAGAGAACATATCCTTGACTGGTAATAGGTTGGAAGGGATTCTACCAAAAG
*
4150552 AAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCGACAGCAACCTGTTCGAAGGTAAACGA
259 AAATAGGAAACTTGACAATGCTTAGGAGTCTATATCTCGACAGCAACCTGTTCGAAGGTAAACGA
4150617 AAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCATTGTTTGGTA
324 AAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGC-TTGTTTGGTA
* * ** *
4150682 AGAAAGCTTCAATTCTTTTCTTCTTTTT-TTTACCAAAGAATTTAAAGTTCATTTTAAACTTATA
388 AGAAAGCTTCAATTCTTTTATT-TTTTTATCTAGTAAA-ATTTTAAAGTTCATTTTAAACTTATA
* * * *
4150746 GACTTATTTTGGAACAATTTCTACGG-GAAAATCTCATCATGGTTTGATTCCTCCCCTAAACTTC
451 GACTTGTTTTGGAACAATTTCTTCGGAG-AAATCCCATCATGGTTTGATTCCTTCCCTAAACTTC
*
4150810 AATACTTTGTGTTTGAGCTTTACCAATCTTGCAGGTGAGATCCCAT-CAGATATGTTTGATCATC
515 AATAC-TTGTCTTTGAGC-TTA-CAATCTTGCAGGTGAGATCCCATCCA-ATATGTTTGATCATC
* * * * ** ** * * *
4150874 TATCTAGATTACAAGTGCTTTTCTTGGGTGATAACAAGCTCTCTGGAAAAATTCCATTGGGTTTA
576 TACCTAGATTGCAAGAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCACTGGGTTTA
* * *
4150939 TTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTCATAATAGGTTGGAAGGGATTCTACCAAA
641 TTCAAGTGCAAAGAGTTAGTGTTCATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACCAAA
*
4151004 AGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCGACAACAACCTGTTCGAAGGTAAAC
706 AGAAATAGGAAACTTGACAATGCTTAAGAGTCTATATCTCTACAACAACCTGTTCGAAGGTAAAC
*
4151069 GGAAAGCAGTTGAATGTTACTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTTTGG
771 GGAAAGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTTTGG
* * *
4151134 TAAAAAAGCTTTAATTTTTTT
836 TAAGAAAGCTTCAATTCTTTT
4151155 TACCAAGTAA
Statistics
Matches: 1600, Mismatches: 138, Indels: 56
0.89 0.08 0.03
Matches are distributed among these distances:
901 77 0.05
902 350 0.22
903 135 0.08
904 4 0.00
905 70 0.04
906 304 0.19
907 301 0.19
908 357 0.22
909 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (901 bp):
AGACTTGTTTTGGAACAATTTCTACAGAGAAATCCCATCATAGTTTGATTCCTTCCCTAACTTCA
ATACTTGTCTTTGAGCTCTAACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCATCTAC
CTAGATTGCAACAGCTTTACTTGGAAGGGAACAAGCTCTCCGGAAAATTCCATTGGGTTTATTCA
AGTGCAAAGAGTTAGAGAACATATCCTTGACTGGTAATAGGTTGGAAGGGATTCTACCAAAAGAA
ATAGGAAACTTGACAATGCTTAGGAGTCTATATCTCGACAGCAACCTGTTCGAAGGTAAACGAAA
AGCAGTTGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTGTTTGGTAAGA
AAGCTTCAATTCTTTTATTTTTTTATCTAGTAAAATTTTAAAGTTCATTTTAAACTTATAGACTT
GTTTTGGAACAATTTCTTCGGAGAAATCCCATCATGGTTTGATTCCTTCCCTAAACTTCAATACT
TGTCTTTGAGCTTACAATCTTGCAGGTGAGATCCCATCCAATATGTTTGATCATCTACCTAGATT
GCAAGAGCTTTACTTGGAAGGGAACAAGCTCTCCGGTAAAATTCCACTGGGTTTATTCAAGTGCA
AAGAGTTAGTGTTCATATCCTTGGCTGATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGA
AACTTGACAATGCTTAAGAGTCTATATCTCTACAACAACCTGTTCGAAGGTAAACGGAAAGCAGT
TGAATGTTATTTTAATTTGTTGTCTTTCTCCAACTGCAATATCTGCTTTGTTTGGTAAGAAAGCT
TCAATTCTTTTCTTTTTTTTTACCAAGTAAAATTTTAAAGTTCATTTTAAACTTAA
Found at i:4157340 original size:18 final size:18
Alignment explanation
Indices: 4157300--4157340 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
4157290 TCTTATATTT
4157300 TATATTATTATATAATAA
1 TATATTATTATATAATAA
*
4157318 AATATTATTAT-TAAGTAA
1 TATATTATTATATAA-TAA
4157336 TATAT
1 TATAT
4157341 CTTTTGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
TATATTATTATATAATAA
Found at i:4158804 original size:3 final size:3
Alignment explanation
Indices: 4158796--4158827 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
4158786 AATCAAAAGG
4158796 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
4158828 GATGGGTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:4163714 original size:111 final size:111
Alignment explanation
Indices: 4163570--4163794 Score: 380
Period size: 111 Copynumber: 2.0 Consensus size: 111
4163560 TAAAAAATAA
*
4163570 AAAAAATTTAATTTTATCTTTTTATAAAGGCTTAATCCCTTTCCAAATCTTAAAAATTAATATAA
1 AAAAAATTTAATTTTATCTTTTTATAAAGGCTTAATCCCTTTACAAATCTTAAAAATTAATATAA
*
4163635 ATTATTTAAATTTACATTTAAATAATATGTTAAAATTAAATCTAAT
66 ATTATTTAAATTTAAATTTAAATAATATGTTAAAATTAAATCTAAT
* *
4163681 AAAAAATTTCAATTTTATC-TTTTATAAAGGCTTAATCCCTTTACAAATCTTAAATATTACTATA
1 AAAAAATTT-AATTTTATCTTTTTATAAAGGCTTAATCCCTTTACAAATCTTAAAAATTAATATA
* *
4163745 AATTATTTAAATTTAAATTTGAATAATATTTTAAAATTAAATCTAAT
65 AATTATTTAAATTTAAATTTAAATAATATGTTAAAATTAAATCTAAT
4163792 AAA
1 AAA
4163795 TTATTTTTAC
Statistics
Matches: 107, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
111 98 0.92
112 9 0.08
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (111 bp):
AAAAAATTTAATTTTATCTTTTTATAAAGGCTTAATCCCTTTACAAATCTTAAAAATTAATATAA
ATTATTTAAATTTAAATTTAAATAATATGTTAAAATTAAATCTAAT
Found at i:4163799 original size:25 final size:26
Alignment explanation
Indices: 4163742--4163801 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 26
4163732 AAATATTACT
* *
4163742 ATAAATTA-TTTAAATTTAAATTTGA
1 ATAAATTATTTTAAAATTAAATCTGA
4163767 AT-AA-TATTTTAAAATTAAATCT-A
1 ATAAATTATTTTAAAATTAAATCTGA
4163790 ATAAATTATTTT
1 ATAAATTATTTT
4163802 TACAAATAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
23 5 0.17
24 17 0.57
25 8 0.27
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (26 bp):
ATAAATTATTTTAAAATTAAATCTGA
Found at i:4170855 original size:458 final size:447
Alignment explanation
Indices: 4169764--4170782 Score: 1017
Period size: 458 Copynumber: 2.2 Consensus size: 447
4169754 ACATCGATTG
* * * * *
4169764 AAACTTATAAACTTGAATTTT-AACAATTTCTACGGAGAAATCCCATCATGGTTTGATTCCTTCC
1 AAACTTAAAAACTTG-TTTTTGAACAATTTCTACAGACAAATCCCATCATGGTTTGA-TCTTTCC
* * * * * * * * ***
4169828 CTAAACTTCAATACTTGTGTTTGAGCTTTAACAATCTTTCAGGTGAGATCCCATCAGATATGTTT
64 CTAAACTTCAATGCTTGTGTTTGAACTTTAACATTCTTGCAAGTGAAATCACACCAGATA-GAAC
* * *** * * *
4169893 GATCATCTATC-TAGATTGCAAGTGTTTGACTTGAAAGGGAACATGCTCTCTGGCAAAATTCCAC
128 AATCAACTA-CATAGAACACAAGAG-TT-ACTTGAAA--CAACAAGCTCTCTGGCAAAATTCCAC
* * * *
4169957 TGGGTTTATTCAAGTGCAAAGAGTTAGAGGACATACACTTCGGTTATAATAGTTTGCAAGGGATT
188 TGAGTTTATTCAAATGCAAAGAGTTAAAGGACATACACTTCAGTTATAATAGTTTGCAAGGGATT
* *
4170022 CTACAAAATGAAATAGGAAACTTGACAAAGCTTAGGAGTCTAGATCTCACCGACAACCTGATTGA
253 CTACAAAATGAAATAAGAAACTTGACAAAGCTTAGGAGTCTAGATCTCACCAACAACCTGATTGA
4170087 AGGTAAACAAAAAGCAGTTGGATGCTATTTTAATTTGTTGTCTTGCTCCAACTGTAATATCCGCT
318 AGGTAAACAAAAAGCAGTTGGATGCTATTTTAATTTGTTGTCTTGCTCCAACTGTAATATCCGCT
* *
4170152 TTGTTTGGTAAGAAAGCTTTAATTCTTTTCTCTTTTTTCTTTTTTACCAAGTAAAATCTTAAAGT
383 TTGTTTGATAAGAAAGCTTCAATTC--TTCTC----TTCTTTTTTACCAAGTAAAATCTTAAAGT
4170217 TCTTTT
442 TCTTTT
* * *
4170223 AAACTTAAAAACTTGTTTTTGAACAATTTCTTCTGACAAATCCCATCATGGTTTGATCTTTCTCT
1 AAACTTAAAAACTTGTTTTTGAACAATTTCTACAGACAAATCCCATCATGGTTTGATCTTTCCCT
* * * ****
4170288 AAACTTCAATGCTTGTGTTTGAGCTTTAACATTCTTGCAGGTGAAATCCCACCAGATATGTTTGA
66 AAACTTCAATGCTTGTGTTTGAACTTTAACATTCTTGCAAGTGAAATCACACCAGATA-GAACAA
* *** * * **
4170353 TCAACTACCTAGATTGCAAGAGCTTTACTTGGGTAAGAACAAGCTCTCTGGCAAAATTCCGTTGA
130 TCAACTACATAGAACACAAGAG--TTACTT--GAAACAACAAGCTCTCTGGCAAAATTCCACTGA
* *
4170418 GTTTATTCAAATGCAAAGAGTTAAAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTA
191 GTTTATTCAAATGCAAAGAGTTAAAGGACATACACTTCAGTTATAATAGTTTGCAAGGGATTCTA
* ** *
4170483 CCAAAA-GAAATAAGAAACTTGACAATGCTTAGGAGTCTATCTCTCATCAACAACCTGATTGAAG
256 -CAAAATGAAATAAGAAACTTGACAAAGCTTAGGAGTCTAGATCTCACCAACAACCTGATTGAAG
* * * * *
4170547 GTAAACGAAAAGCATTTGGATGCTATTTTAATTAGCTTATTTTAATTTGTTTTCTTGCTCTATCT
320 GTAAACAAAAAGCAGTT-G--G--------A-T-GC-TATTTTAATTTGTTGTCTTGCTCCAACT
**
4170612 GTAATATCCTTTTTGTTTGATAAGAAAGCTTCAATTC-T-TC-TCTTTTTTACCAAGTAAAATCT
371 GTAATATCCGCTTTGTTTGATAAGAAAGCTTCAATTCTTCTCTTCTTTTTTACCAAGTAAAATCT
4170674 TAAAGTTCTTCTTTT
436 TAAAG---TTCTTTT
* * ** *
4170689 AAACTTATAAACTTGTTTTTTTAACAATTTCTACAGTGAAATCCTATCATGGTTTGAT-TACTTC
1 AAACTTAAAAACTTG-TTTTTGAACAATTTCTACAGACAAATCCCATCATGGTTTGATCT--TTC
4170753 CCTAAACTTCAATGCTTGTGTTTGAACTTT
63 CCTAAACTTCAATGCTTGTGTTTGAACTTT
4170783 GTTGGTGTTT
Statistics
Matches: 486, Mismatches: 48, Indels: 43
0.84 0.08 0.07
Matches are distributed among these distances:
457 1 0.00
458 245 0.50
459 55 0.11
460 3 0.01
461 1 0.00
463 27 0.06
466 22 0.05
467 36 0.07
468 33 0.07
469 2 0.00
470 1 0.00
471 2 0.00
472 58 0.12
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.37
Consensus pattern (447 bp):
AAACTTAAAAACTTGTTTTTGAACAATTTCTACAGACAAATCCCATCATGGTTTGATCTTTCCCT
AAACTTCAATGCTTGTGTTTGAACTTTAACATTCTTGCAAGTGAAATCACACCAGATAGAACAAT
CAACTACATAGAACACAAGAGTTACTTGAAACAACAAGCTCTCTGGCAAAATTCCACTGAGTTTA
TTCAAATGCAAAGAGTTAAAGGACATACACTTCAGTTATAATAGTTTGCAAGGGATTCTACAAAA
TGAAATAAGAAACTTGACAAAGCTTAGGAGTCTAGATCTCACCAACAACCTGATTGAAGGTAAAC
AAAAAGCAGTTGGATGCTATTTTAATTTGTTGTCTTGCTCCAACTGTAATATCCGCTTTGTTTGA
TAAGAAAGCTTCAATTCTTCTCTTCTTTTTTACCAAGTAAAATCTTAAAGTTCTTTT
Found at i:4173272 original size:467 final size:465
Alignment explanation
Indices: 4171715--4174376 Score: 3526
Period size: 467 Copynumber: 5.7 Consensus size: 465
4171705 TTTCTTAACA
* *
4171715 AGCTTTAACAATCTTGTAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
* *
4171780 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTTAAGTGCAAAAAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
* * * *
4171845 TAGAGGACACAGACTTCAGTTATAATAGTTTGCAAGGGATTTTACCAAAAGAAATAGGAAACATG
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
* * *
4171910 ACAATGCTTAGGAGTCTATCTCTCGTCAACAACCTGATTGAAGGTAAATGAAAAGCATTTGGATG
196 ACAATGCTTAGGAGTCTATCTC-AGTCAACAACCTGATTGAAGGTAAACGAAAAGCATTTAGATG
* ** * * * *
4171975 TTATTTTAATTAGCTTATTTTAATTTGTTGTCTTGCTCCAACTACAGTATTCACTTGGTTTGGTA
260 CTATTTTAATTAGCTTATTTTAATTTGTTGTCTTGCTCCAACTGTAATATCCGCTTTGTTTGGTA
** * *
4172040 AGAAAGCTTTTATTCTTTTCTCTTTCTTGCCAAGTAAAATCTT-AAGTTCTTCTTTTAAACTAAT
325 AGAAAGCTTCAATTCTTTTCT-TTT-TTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTAT
*
4172104 AAACTTGTTTTTTTAACAATTTTTA-GGAGAAATCCCATCATGGTTTGATTCCTTCTCTAAACTT
388 AAACTTG-TTTTTTAACAATTTTTACGGAGAAATCCCATCATGGTTTGATT-CTTCCCTAAACTT
* *
4172168 CAATACTTATGTTTG
451 CAATGCTTGTGTTTG
* *
4172183 AGCTATAACAATCTTGCAGGTGAGATGCCATCATATATGTTTGATCATCTACCTGGATTGCAAGA
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
*
4172248 GCTTTACTTGGGTAGAAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
*** *
4172313 TAGAGGACATAGACCAAAGTTATAATAGTTTGGAAGGGATTCTACCAAAATAAATAGGAAACTTG
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
* * * *
4172378 ACAATGCTTAGGAGTCTATCTCTCA-TCAAAAACTTGATTGAAGGTAAACAAAAAGCATTTGGAT
196 ACAATGCTTAGGAGTCTA--TCTCAGTCAACAACCTGATTGAAGGTAAACGAAAAGCATTTAGAT
* * * *
4172442 GCTATTTTAAATAGCTTATTTTAATTTGTTGTCTTTCTCCAACTGTAACATCCGTTTTGTTTGGT
259 GCTATTTTAATTAGCTTATTTTAATTTGTTGTCTTGCTCCAACTGTAATATCCGCTTTGTTTGGT
4172507 AAGAAAGCTTCAATTCTTTTCTTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTAT
324 AAGAAAGCTTCAATTCTTTTC-TTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTAT
* * * * * * *
4172572 GAACTTTTTTTTTAAATAATTTCTT-CAGAGGAATCCCAACA-----TG------CCCTAGACTT
388 AAACTTGTTTTTT-AACAATTT-TTACGGAGAAATCCCATCATGGTTTGATTCTTCCCTAAACTT
4172625 CAATGCTTGTGTTTG
451 CAATGCTTGTGTTTG
* * *
4172640 AGCTTTACCAATCTTGCAGGTGAGATGCCGTCAGATATGTTTGATCATCTACCTAGATTGCAAGA
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
*
4172705 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGAAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
* * * *
4172770 TAGAGGACATGGACTTCAGTTATAACAGTTTGGAAGGGACTCTTCCAAAAGAAATAGGAAACTTG
131 TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
* * ***
4172835 ACAATGCTTAGGAGTCTATCTCTTGTCAACAACCTAATTGAAGGTAAACGAAAAGCATCGGGATG
196 ACAATGCTTAGGAGTCTATCTC-AGTCAACAACCTGATTGAAGGTAAACGAAAAGCATTTAGATG
** * *
4172900 CTATTTCGATTAGCTTATTTTAATTTGTTGTCTTGCTCCAACTGTAACATCCGCTTTATTTGGTA
260 CTATTTTAATTAGCTTATTTTAATTTGTTGTCTTGCTCCAACTGTAATATCCGCTTTGTTTGGTA
*
4172965 CGAAAGCTTCAATTCTTTTCTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTATAA
325 AGAAAGCTTCAATTCTTTTCTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTATAA
* * *
4173030 ACTTGATTTTTAACAATTTTTACAGAGAAATCCCAACATGGTTTGATTCTTCCCCTAAACTTCAA
390 ACTTGTTTTTTAACAATTTTTACGGAGAAATCCCATCATGGTTTGATTCTT-CCCTAAACTTCAA
4173095 TGCTTGTGTTTG
454 TGCTTGTGTTTG
* *
4173107 AGCTTTACCAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
* *
4173172 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATGCCATTGGATTTATTCAAGTGCAAAGAGT
66 GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
* * * * *
4173237 TAGAGGGCATATACTT-GGATATTAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTT
131 TAGAGGACATAGACTTCAGTTA-TAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTT
** * * *
4173301 GACAATGCTTAGGAGTCTAGATCTCAG-CCGCAACCCGGTTGAAGGTAATACTAAAAGCATTTAG
195 GACAATGCTTAGGAGTCT--ATCTCAGTCAACAACCTGATTGAAGGTAA-ACGAAAAGCATTTAG
* * *
4173365 ATGTTATTTTAATTAGCTTTCTTTTAATTAGTTGTCTTGCTCCAACTGTAATATCCGCTTTGTTT
257 ATGCTATTTTAATTAGC-TTATTTTAATTTGTTGTCTTGCTCCAACTGTAATATCCGCTTTGTTT
*
4173430 GGTAAGAAAGCTTCAATTCTTTTCTCTTTTTTACCAAATAAAATCTTAAAG---TTC-TTTAAAC
321 GGTAAGAAAGCTTCAATTC-TTT-TCTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAAC
* *
4173491 TTATAAACTTGTTTTTTAACAATTTCTATGGAGAAATCCCATCATGGTTTGATTCTTTCCCTAAA
384 TTATAAACTTGTTTTTTAACAATTTTTACGGAGAAATCCCATCATGGTTTGATTC-TTCCCTAAA
* *
4173556 CTTCAATGTTTGTATTTG
448 CTTCAATGCTTGTGTTTG
*
4173574 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAGGA
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
* * *
4173639 GCTTTACTTGGATAGGAAC-AGACTCTCTGGCAAAATTCCATTGAGTTTATTCAAGTACAAAGAG
66 GCTTTACTTGGGTAGGAACAAG-CTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAG
* * *
4173703 TTAGAGGGCATAGACTTCAGTTATAATATTTTGGAAGGGATTCTACCAAAAGAAATGGGAAACTT
130 TTAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTT
* * * * * * *
4173768 GACAATGCTTAGTATTCTAGATCTCAG-CGACAACCTGATCGAAGGTAAATGGAACGCATTTAGA
195 GACAATGCTTAGGAGTCT--ATCTCAGTCAACAACCTGATTGAAGGTAAACGAAAAGCATTTAGA
* * * * *
4173832 TGCTATTTTAATCAGTTTATTTTAATTTTTTTGTCTTGCTCCAACTGTAATATCCGTTTTGTTTT
258 TGCTATTTTAATTAGCTTATTTTAA-TTTGTTGTCTTGCTCCAACTGTAATATCCGCTTTGTTTG
* **
4173897 GTAAGAAAGCTTCAATTTTTTTCTTTTTTTTTCAAGT-AAATCTTAAAGTTCTTCTTTTAAAC-T
322 GTAAGAAAGCTTCAATTCTTTTC-TTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTT
* * * * * *
4173960 -T----GT-TTTTTTAACAATTTCTACGGAGAAATCTCATCGTGGTTTGATTCTTTCACTAAAGT
386 ATAAACTTGTTTTTTAACAATTTTTACGGAGAAATCCCATCATGGTTTGATTC-TTCCCTAAACT
4174019 TCAATGCTTGTGTTTG
450 TCAATGCTTGTGTTTG
* * * *
4174035 AGCTATAACAATCTTGCAGGTGAGATCCCATCAGATATGTTTGATCATCTATCTAGATTGCACGT
1 AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
* *
4174100 GCTTTAC-TGGGT-GACAACAAGCTCTCTGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAG
66 GCTTTACTTGGGTAG-GAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAG
* * * *
4174163 TTAGAGTACATAGACTT-GGCTGATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACT
130 TTAGAGGACATAGACTTCAG-TTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACT
* * ** **
4174227 TGACAATGCTTAAGAGTATATCTCAGT-GGCAACCTGATTGAAGGTAAAC-AGAACCCATTTAGA
194 TGACAATGCTTAGGAGTCTATCTCAGTCAACAACCTGATTGAAGGTAAACGA-AAAGCATTTAGA
* * * * *
4174290 TGCCATTTTAATTAGTTTATTTTAATTTTTTGTCTTTCTCCAACTGCAATATTCC-CTTTGTTTG
258 TGCTATTTTAATTAGCTTATTTTAATTTGTTGTCTTGCTCCAACTGTAATA-TCCGCTTTGTTTG
* *
4174354 GTAAGAAAGTTTGAATTCTTTTC
322 GTAAGAAAGCTTCAATTCTTTTC
4174377 CTTTCTATTT
Statistics
Matches: 1952, Mismatches: 198, Indels: 99
0.87 0.09 0.04
Matches are distributed among these distances:
454 2 0.00
455 26 0.01
456 53 0.03
457 382 0.20
458 63 0.03
459 2 0.00
460 118 0.06
461 135 0.07
462 1 0.00
464 15 0.01
465 21 0.01
466 83 0.04
467 555 0.28
468 382 0.20
469 81 0.04
470 7 0.00
471 26 0.01
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (465 bp):
AGCTATAACAATCTTGCAGGTGAGATGCCATCAGATATGTTTGATCATCTACCTAGATTGCAAGA
GCTTTACTTGGGTAGGAACAAGCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGT
TAGAGGACATAGACTTCAGTTATAATAGTTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTG
ACAATGCTTAGGAGTCTATCTCAGTCAACAACCTGATTGAAGGTAAACGAAAAGCATTTAGATGC
TATTTTAATTAGCTTATTTTAATTTGTTGTCTTGCTCCAACTGTAATATCCGCTTTGTTTGGTAA
GAAAGCTTCAATTCTTTTCTTTTTTACCAAGTAAAATCTTAAAGTTCTTCTTTTAAACTTATAAA
CTTGTTTTTTAACAATTTTTACGGAGAAATCCCATCATGGTTTGATTCTTCCCTAAACTTCAATG
CTTGTGTTTG
Found at i:4175612 original size:29 final size:29
Alignment explanation
Indices: 4175580--4175866 Score: 186
Period size: 29 Copynumber: 9.8 Consensus size: 29
4175570 TATGGACACC
*
4175580 CGGGGGCAAAATGGTAATTTTGGTGAAAT
1 CGGGGGTAAAATGGTAATTTTGGTGAAAT
*
4175609 CGGGGTTGAAAATGG-AATTTT-G-GAAAGTT
1 CGGGGGT-AAAATGGTAATTTTGGTGAAA--T
* * *
4175638 CGGGGGTAAAATGGTAATTTTTGATAAAAC
1 CGGGGGTAAAATGGTAA-TTTTGGTGAAAT
* * * *
4175668 CGAGGTTAAAAATGG-AATTTT--AGAAGGTT
1 CGGGGGT-AAAATGGTAATTTTGGTGAA--AT
*
4175697 CGAGGGTAAAATGGTAATTTTCGGTGAAAT
1 CGGGGGTAAAATGGTAATTTT-GGTGAAAT
* * *
4175727 CGAGGCTACAAATGG-AATTTTGG-AAAATT
1 CGGGGGTA-AAATGGTAATTTTGGTGAAA-T
*
4175756 CAGGGGTAAAATGGTAATTTTTGGTGAAA-
1 CGGGGGTAAAATGGTAA-TTTTGGTGAAAT
*
4175785 CTGGGGTTAAAAATGG-AATTTT-G-GAAAGTT
1 C-GGGGGT-AAAATGGTAATTTTGGTGAAA--T
*
4175815 TGGGGGTAAAATGGTAATTTTTGGTGAAAT
1 CGGGGGTAAAATGGTAA-TTTTGGTGAAAT
*
4175845 CGGGGTTAAAAT-GTAATTTTGG
1 CGGGGGTAAAATGGTAATTTTGG
4175867 AAAAGTTTTG
Statistics
Matches: 203, Mismatches: 27, Indels: 57
0.71 0.09 0.20
Matches are distributed among these distances:
27 10 0.05
28 38 0.19
29 62 0.31
30 59 0.29
31 24 0.12
32 10 0.05
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.31
Consensus pattern (29 bp):
CGGGGGTAAAATGGTAATTTTGGTGAAAT
Found at i:4175698 original size:59 final size:59
Alignment explanation
Indices: 4175580--4175887 Score: 397
Period size: 59 Copynumber: 5.2 Consensus size: 59
4175570 TATGGACACC
* *
4175580 CGGGGGCAAAATGGTAA-TTTTGGTGAAATCGGGGTTGAAAATGGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT
* * * * * *
4175638 CGGGGGTAAAATGGTAATTTTTGATAAAACCGAGGTTAAAAATGGAATTTTAGAAGGTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT
* * * * * *
4175697 CGAGGGTAAAATGGTAATTTTCGGTGAAATCGAGGCTACAAATGGAATTTTGGAAAATT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT
*
4175756 CAGGGGTAAAATGGTAATTTTTGGTGAAA-CTGGGGTTAAAAATGGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATC-GGGGTTAAAAATGGAATTTTGGAAAGTT
* *
4175815 TGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATGTAATTTTGGAAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGG-AAAGTT
**
4175874 TTGGGGTCAAAATG
1 CGGGGGT-AAAATG
4175888 TGATTTTGGA
Statistics
Matches: 216, Mismatches: 29, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
58 31 0.14
59 178 0.82
60 7 0.03
ACGTcount: A:0.34, C:0.05, G:0.30, T:0.31
Consensus pattern (59 bp):
CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT
Found at i:4175880 original size:30 final size:30
Alignment explanation
Indices: 4175794--4176096 Score: 409
Period size: 30 Copynumber: 10.2 Consensus size: 30
4175784 ACTGGGGTTA
* *
4175794 AAAATGGAATTTTGG-AAAGTTTGGGGGT-
1 AAAATGTAATTTTGGAAAAGTTTTGGGGTC
* * *
4175822 AAAATGGTAATTTTTGGTGAAA---TCGGGGTT
1 AAAAT-GTAA-TTTTGG-AAAAGTTTTGGGGTC
4175852 AAAATGTAATTTTGGAAAAGTTTTGGGGTC
1 AAAATGTAATTTTGGAAAAGTTTTGGGGTC
* *
4175882 AAAATGTGATTTTGGAAAAGTTTTAGGGTC
1 AAAATGTAATTTTGGAAAAGTTTTGGGGTC
* *
4175912 AAAATATAATTTTGGAAAGGTTTTGGGGTC
1 AAAATGTAATTTTGGAAAAGTTTTGGGGTC
*
4175942 AAAATATAATTTTGGAAAAGTTTTGGGGTC
1 AAAATGTAATTTTGGAAAAGTTTTGGGGTC
* *
4175972 AAAATATAATTTTGGAAAAGTTCTGGGGTC
1 AAAATGTAATTTTGGAAAAGTTTTGGGGTC
4176002 AAAATGTAATTTTGGAAAAGTTTTGGGGTC
1 AAAATGTAATTTTGGAAAAGTTTTGGGGTC
* *
4176032 AAAATATAGTTTTGGAAAAGTTTTGGGGTC
1 AAAATGTAATTTTGGAAAAGTTTTGGGGTC
*
4176062 AAAATGTGATTTTGGAAAAGTTTTGGGGTC
1 AAAATGTAATTTTGGAAAAGTTTTGGGGTC
4176092 AAAAT
1 AAAAT
4176097 ATAGTTTCTA
Statistics
Matches: 247, Mismatches: 20, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
27 3 0.01
28 11 0.04
29 13 0.05
30 217 0.88
32 3 0.01
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (30 bp):
AAAATGTAATTTTGGAAAAGTTTTGGGGTC
Found at i:4175894 original size:59 final size:59
Alignment explanation
Indices: 4175582--4176067 Score: 347
Period size: 59 Copynumber: 8.2 Consensus size: 59
4175572 TGGACACCCG
* * **
4175582 GGGGCAAAATGGTAA-TTTTGGTGAAATCGGGGTTGAAAATGGAATTTTGG-AAAGTTCG
1 GGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTT-AAAATGGAATTTTGGAAAAGTTTT
* * * * * *
4175640 GGGGTAAAATGGTAATTTTTGATAAAACCGAGGTTAAAAATGGAATTTT--AGAAGGTTC
1 GGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTT-AAAATGGAATTTTGGAAAAGTTTT
* * * * **
4175698 GAGGGTAAAATGGTAATTTTCGGTGAAATCGAGGCTACAAATGGAATTTTGGAAAA-TTCA
1 G-GGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTA-AAATGGAATTTTGGAAAAGTTTT
* *
4175758 GGGGTAAAATGGTAATTTTTGGTGAAA-CTGGGGTTAAAAATGGAATTTTGG-AAAGTTTG
1 GGGGTAAAATGGTAATTTTTGGTAAAATC-GGGGTT-AAAATGGAATTTTGGAAAAGTTTT
* *
4175817 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAATGGAATTTTGGAAAAGTTTT
* ** * ** *
4175876 GGGGTCAAAAT-GTGA-TTTTGG-AAAAGTTTTAGGGTCAAAATATAATTTTGGAAAGGTTTT
1 GGGGT-AAAATGGTAATTTTTGGTAAAA---TCGGGGTTAAAATGGAATTTTGGAAAAGTTTT
* * * ** *
4175936 GGGGTCAAAAT-ATAA-TTTTGG-AAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTCT
1 GGGGT-AAAATGGTAATTTTTGGTAAAA---TCGGGGTTAAAATGGAATTTTGGAAAAGTTTT
* * ** *
4175996 GGGGTCAAAAT-GTAA-TTTTGG-AAAAGTTTTGGGGTCAAAATATAGTTTTGGAAAAGTTTT
1 GGGGT-AAAATGGTAATTTTTGGTAAAA---TCGGGGTTAAAATGGAATTTTGGAAAAGTTTT
4176056 GGGGTCAAAATG
1 GGGGT-AAAATG
4176068 TGATTTTGGA
Statistics
Matches: 371, Mismatches: 41, Indels: 29
0.84 0.09 0.07
Matches are distributed among these distances:
57 3 0.01
58 44 0.12
59 162 0.44
60 159 0.43
61 3 0.01
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.33
Consensus pattern (59 bp):
GGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAATGGAATTTTGGAAAAGTTTT
Found at i:4175894 original size:118 final size:117
Alignment explanation
Indices: 4175581--4176014 Score: 429
Period size: 118 Copynumber: 3.7 Consensus size: 117
4175571 ATGGACACCC
* *
4175581 GGGGGCAAAATGGTAATTTTGGTGAAATCGGGGTTGAAAATGGAATTTTGG-AAAGTTCGGGGGT
1 GGGGGTAAAATGGTAATTTTGGTGAAATCGGGGTT-AAAATGGAATTTTGGAAAAGTTCTGGGGT
* * * * * *
4175645 AAAATGGTAATTTTTGATAAAACCGAGGTTAAAAATGGAATTTTAGAAGGTTC
65 AAAATGGTAATTTTTGGTAAAACTGGGGTTAAAAATGGAATTTTGGAAAGTTT
* * * *
4175698 GAGGGTAAAATGGTAATTTTCGGTGAAATCGAGGCTACAAATGGAATTTTGGAAAA-TTCAGGGG
1 GGGGGTAAAATGGTAATTTT-GGTGAAATCGGGGTTA-AAATGGAATTTTGGAAAAGTTCTGGGG
*
4175762 TAAAATGGTAATTTTTGGTGAAACTGGGGTTAAAAATGGAATTTTGGAAAGTTT
64 TAAAATGGTAATTTTTGGTAAAACTGGGGTTAAAAATGGAATTTTGGAAAGTTT
* *
4175816 GGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGT
1 GGGGGTAAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAATGGAATTTTGGAAAAGTTCTGGGGT
* * * *
4175881 CAAAAT-GTGA-TTTTGG-AAAAGTTTTAGGGTCAAAATAT--AATTTTGGAAAGGTTT
65 -AAAATGGTAATTTTTGGTAAAA---CTGGGGTTAAAA-ATGGAATTTTGGAAA-GTTT
* * * * * **
4175935 TGGGGTCAAAAT-ATAATTTTGG-AAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTCTGG
1 GGGGGT-AAAATGGTAATTTTGGTGAAA---TCGGGGTTAAAATGGAATTTTGGAAAAGTTCTGG
4175998 GGTCAAAAT-GTAATTTT
62 GGT-AAAATGGTAATTTT
4176015 GGAAAAGTTT
Statistics
Matches: 270, Mismatches: 31, Indels: 28
0.82 0.09 0.09
Matches are distributed among these distances:
116 3 0.01
117 45 0.17
118 137 0.51
119 33 0.12
120 49 0.18
121 3 0.01
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.33
Consensus pattern (117 bp):
GGGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAATGGAATTTTGGAAAAGTTCTGGGGTA
AAATGGTAATTTTTGGTAAAACTGGGGTTAAAAATGGAATTTTGGAAAGTTT
Found at i:4176453 original size:163 final size:161
Alignment explanation
Indices: 4176200--4176511 Score: 414
Period size: 163 Copynumber: 1.9 Consensus size: 161
4176190 ATTTGAAAAT
* * * *
4176200 CTTGAAAAATTTTGGGCCAATTTTGTAATTACATAAAAGTTAATTTAAGGACTAAATTAAAATAA
1 CTTGAAAAATTTTGGGCCAATTTCGTAATTAAATAAAAGTTAATTTAAGGACTAAATCAAAACAA
* * *
4176265 ACTAAAAATAGAAGGGACTAAATGCAGAAATAAGCCAAAAATTGACACGTGGCAG-CATCTGGTG
66 ACTAAAAATAGAAGGGACTAAATGCAGAAATAAGCCAAAAAATGACACGTGGCAGAC-TCTGATA
4176329 CAGTCAAACAGTCAAAGGACTAGTTTATAAAC
130 CAGTCAAACAGTCAAAGGACTAGTTTATAAAC
* ** *
4176361 CTTGAAAAATTATTGGGCCAATTTCGTAATTAAA-ATAAAGTTGATTTGGGGATTAAATCAAAAC
1 CTTGAAAAATT-TTGGGCCAATTTCGTAATTAAATA-AAAGTTAATTTAAGGACTAAATCAAAAC
* * * *
4176425 AAATTAAAAA-ATGTCAGGGACTAAATGCAGAAATGATCCAAAAAATGACACGTGGCAGACTCTG
64 AAACTAAAAATA-G-AAGGGACTAAATGCAGAAATAAGCCAAAAAATGACACGTGGCAGACTCTG
*
4176489 ATACAGTCAAATAGTCAAAGGAC
127 ATACAGTCAAACAGTCAAAGGAC
4176512 CAAATTGAAA
Statistics
Matches: 130, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
161 13 0.10
162 52 0.40
163 64 0.49
164 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.25
Consensus pattern (161 bp):
CTTGAAAAATTTTGGGCCAATTTCGTAATTAAATAAAAGTTAATTTAAGGACTAAATCAAAACAA
ACTAAAAATAGAAGGGACTAAATGCAGAAATAAGCCAAAAAATGACACGTGGCAGACTCTGATAC
AGTCAAACAGTCAAAGGACTAGTTTATAAAC
Found at i:4177370 original size:12 final size:12
Alignment explanation
Indices: 4177350--4177379 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
4177340 GTTATTATTG
4177350 TAATATATTTAT
1 TAATATATTTAT
*
4177362 TAATGTATTTAT
1 TAATATATTTAT
4177374 TAATAT
1 TAATAT
4177380 CATTCACCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (12 bp):
TAATATATTTAT
Found at i:4177885 original size:20 final size:20
Alignment explanation
Indices: 4177853--4177912 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
4177843 CAGGGCATGG
4177853 TGGAGCTTGGTGGTCAGCAGA
1 TGGAGC-TGGTGGTCAGCAGA
*
4177874 TGGAGCTGGTGGTCAGAAGA
1 TGGAGCTGGTGGTCAGCAGA
*
4177894 TGGAGCTGGTGGCCAGCAG
1 TGGAGCTGGTGGTCAGCAG
4177913 CAGTAGGCAC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
20 30 0.83
21 6 0.17
ACGTcount: A:0.20, C:0.15, G:0.45, T:0.20
Consensus pattern (20 bp):
TGGAGCTGGTGGTCAGCAGA
Found at i:4177976 original size:12 final size:13
Alignment explanation
Indices: 4177957--4177997 Score: 57
Period size: 12 Copynumber: 3.2 Consensus size: 13
4177947 TTTGGACTAT
4177957 TGTAATTGGGCCC
1 TGTAATTGGGCCC
*
4177970 T-TAATTGGGCCTT
1 TGTAATTGGGCC-C
4177983 TGTAATTGGGCCC
1 TGTAATTGGGCCC
4177996 TG
1 TG
4177998 GGCCATGGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 10 0.42
13 4 0.17
14 10 0.42
ACGTcount: A:0.15, C:0.20, G:0.29, T:0.37
Consensus pattern (13 bp):
TGTAATTGGGCCC
Found at i:4178091 original size:48 final size:48
Alignment explanation
Indices: 4178031--4178137 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 48
4178021 ATTTGGACTT
* * ** *
4178031 TTAAATGTTAAAT-TTAATATTTTAATTTTTATTTAAATTTAAATTCAAA
1 TTAAAT-TTAAATATTAA-ATTTTAAATTTAAAATAAATCTAAATTCAAA
* *
4178080 TTAAATTTAAATATTTAATTTTAAATTTAAAATAAATCTAAATTTAAA
1 TTAAATTTAAATATTAAATTTTAAATTTAAAATAAATCTAAATTCAAA
4178128 -TAAATTTAAA
1 TTAAATTTAAA
4178138 ATCAATTTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
47 10 0.20
48 31 0.62
49 9 0.18
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.49
Consensus pattern (48 bp):
TTAAATTTAAATATTAAATTTTAAATTTAAAATAAATCTAAATTCAAA
Found at i:4178095 original size:31 final size:31
Alignment explanation
Indices: 4178060--4178122 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
4178050 TTTTAATTTT
* *
4178060 TATTTAAATTTAAATTCAAATTAAATTTAAA
1 TATTTAAATTTAAATTCAAAATAAATCTAAA
* *
4178091 TATTTAATTTTAAATTTAAAATAAATCTAAA
1 TATTTAAATTTAAATTCAAAATAAATCTAAA
4178122 T
1 T
4178123 TTAAATAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (31 bp):
TATTTAAATTTAAATTCAAAATAAATCTAAA
Found at i:4178110 original size:6 final size:6
Alignment explanation
Indices: 4178030--4178137 Score: 89
Period size: 6 Copynumber: 18.0 Consensus size: 6
4178020 CATTTGGACT
* ** *
4178030 TTTAAA TGTTAAA TTTAATA TTTTAA TTTTTA TTTAAA TTTAAA TTCAAA
1 TTTAAA T-TTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * *
4178080 -TTAAA TTTAAATA TTTAAT TTTAAA TTTAAA -ATAAA TCTAAA TTTAAA
1 TTTAAA TTT-AA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
4178128 --TAAA TTTAAA
1 TTTAAA TTTAAA
4178138 ATCAATTTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
4 4 0.05
5 8 0.10
6 52 0.63
7 15 0.18
8 4 0.05
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:4178123 original size:42 final size:43
Alignment explanation
Indices: 4178033--4178128 Score: 110
Period size: 42 Copynumber: 2.2 Consensus size: 43
4178023 TTGGACTTTT
* *
4178033 AAATGTTAAATTTAATATTTTAATTTTTATTTAAATTTAAATTC
1 AAAT-TTAAATTTAATATTTTAATTTTAATTTAAATATAAATTC
4178077 AAA-TTAAATTTAA-ATATTTAATTTTAAATTTAAA-ATAAA-TC
1 AAATTTAAATTTAATAT-TTTAATTTT-AATTTAAATATAAATTC
4178118 TAAATTTAAAT
1 -AAATTTAAAT
4178129 AAATTTAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
41 4 0.09
42 26 0.57
43 13 0.28
44 3 0.07
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (43 bp):
AAATTTAAATTTAATATTTTAATTTTAATTTAAATATAAATTC
Found at i:4178573 original size:39 final size:39
Alignment explanation
Indices: 4178514--4178615 Score: 152
Period size: 39 Copynumber: 2.6 Consensus size: 39
4178504 CAACTTTACT
* *
4178514 TCAATTTCAAA-GGGACGACGTTGTGTTATCCACTCTACG
1 TCAATTT-AAAGGGGATGACGTTGCGTTATCCACTCTACG
*
4178553 TCAATTTAAAGGGGATGACGTTGCGTTATCCACTCTACT
1 TCAATTTAAAGGGGATGACGTTGCGTTATCCACTCTACG
*
4178592 TCAATTTCAAGGGGATGACGTTGC
1 TCAATTTAAAGGGGATGACGTTGC
4178616 TCTTACTTCA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 3 0.05
39 55 0.95
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (39 bp):
TCAATTTAAAGGGGATGACGTTGCGTTATCCACTCTACG
Found at i:4178659 original size:69 final size:69
Alignment explanation
Indices: 4178579--4179045 Score: 846
Period size: 69 Copynumber: 6.8 Consensus size: 69
4178569 GACGTTGCGT
*
4178579 TATCC-ACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
4178643 TTGA
66 TTGA
* *
4178647 TATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCGGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
4178712 TTGA
66 TTGA
4178716 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
4178781 TTGA
66 TTGA
* *
4178785 TATCCAACTCTACTTCAATTTCAAGAGGATGATGTTGCTCCTACTTCAATTTCAGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
*
4178850 CTGA
66 TTGA
*
4178854 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCGGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
4178919 TTGA
66 TTGA
*
4178923 TATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
4178988 TTGA
66 TTGA
*
4178992 TATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCA
1 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCA
4179046 AGAGGATGAC
Statistics
Matches: 384, Mismatches: 14, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
68 5 0.01
69 379 0.99
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (69 bp):
TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
TTGA
Found at i:4178837 original size:100 final size:100
Alignment explanation
Indices: 4178725--4179145 Score: 487
Period size: 100 Copynumber: 4.1 Consensus size: 100
4178715 ATATCCAACT
4178725 CTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCC
1 CTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCC
* *
4178790 AACTCTACTTCAATTTCAAGAGGATGATGTTGCTC
66 AACTCTACTTCAATTTCGAGAGGATGACGTTGCTC
** * * * ** *
4178825 CTACTTCAATTTCAGAGATAAAGACCTGATATCCAACTCTACTTCAATTTCA-AGAGGATGAC--
1 CTACTTCAATTTCA-AGAGGATGA-C-G-T-TGC-TCT-TACTTCAATTTCAGAGATAAAGACTT
* * ** * * *
4178887 G-T-TGC-TCT-TACTTCAATTTCGGAGATAAAGACTTGATATCCAAC
59 GATATCCAACTCTACTTCAATTTC-GAGAGGATGAC--G-T-TGC-TC
*
4178931 TCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATC
1 -CTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATC
4178996 CAACTCTACTTCAATTTCGAGAGGATGACGTTGCTC
65 CAACTCTACTTCAATTTCGAGAGGATGACGTTGCTC
*
4179032 TTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCC
1 CTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCC
4179097 AACTCTACTTCAATTTCGAGAGGATGACGTTGCTC
66 AACTCTACTTCAATTTCGAGAGGATGACGTTGCTC
*
4179132 TTACTTCAATTTCA
1 CTACTTCAATTTCA
4179146 GAGATAAAGA
Statistics
Matches: 265, Mismatches: 35, Indels: 42
0.77 0.10 0.12
Matches are distributed among these distances:
100 151 0.57
101 24 0.09
102 7 0.03
103 6 0.02
104 6 0.02
105 7 0.03
106 26 0.10
107 38 0.14
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.34
Consensus pattern (100 bp):
CTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCC
AACTCTACTTCAATTTCGAGAGGATGACGTTGCTC
Found at i:4178975 original size:169 final size:168
Alignment explanation
Indices: 4178579--4179214 Score: 598
Period size: 169 Copynumber: 3.7 Consensus size: 168
4178569 GACGTTGCGT
* * *
4178579 TATCC-ACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGAGAAAGAC
* * * * * **
4178643 TTGATATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCGGAGATAA
66 -TGATATCCAACTCTACTTCAATTTCGAGAGAAAGACGTTCCACTTACTTCAATTTC-AAGAGGA
* * * ** *
4178708 AGACTTGATATCCAACTCTACTTCAATTTCA-AGAGGATGAC--G-
129 TGAC--G-T-TGC-TCT-TACTTCAATTTCAGAGATAAAGACTTGA
* * ** * * *
4178750 T-TGC-TCT-TACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCA-AGA
1 TATCCAACTCTACTTCAATTTC-GAGAGGATGAC--G-T-TGC-TCT-TACTTCAATTTCAGAGA
* * * * *
4178811 GGATGA-TG-T-TGC-TC-CTACTTCAATTTCAGAGATAAAGACCTGATATCCAACTCTACTTCA
59 GAAAGACTGATATCCAACTCTACTTCAATTTC-GAGAGAAAGA-C-G-T-TCC-ACT-TACTTCA
*
4178871 ATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCGGAGATAAAGACTTGA
117 ATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGA
*
4178923 TATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGAGAAAGAC
* * * *
4178988 TTGATATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAAGAGGAT
66 -TGATATCCAACTCTACTTCAATTTCGAGAGAAAGACGTTCCACTTACTTCAATTTCAAGAGGAT
4179053 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGA
130 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGA
*
4179092 TATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGAGAAAGA-
* * * * *
4179157 CTGATATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCA
65 CTGATATCCAACTCTACTTCAATTTCGAGAGAAAGACGTTCCACTTACTTCAATTTCA
4179215 GAGATAAAGA
Statistics
Matches: 388, Mismatches: 48, Indels: 60
0.78 0.10 0.12
Matches are distributed among these distances:
169 228 0.59
170 38 0.10
171 10 0.03
172 9 0.02
173 9 0.02
174 9 0.02
175 35 0.09
176 50 0.13
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (168 bp):
TATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGAGAAAGAC
TGATATCCAACTCTACTTCAATTTCGAGAGAAAGACGTTCCACTTACTTCAATTTCAAGAGGATG
ACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGA
Found at i:4179106 original size:69 final size:69
Alignment explanation
Indices: 4179033--4179264 Score: 437
Period size: 69 Copynumber: 3.4 Consensus size: 69
4179023 ACGTTGCTCT
4179033 TACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCA
1 TACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCA
4179098 ACTC
66 ACTC
* *
4179102 TACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACCTGATATCCA
1 TACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCA
4179167 ACTC
66 ACTC
4179171 TACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCA
1 TACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCA
4179236 ACTC
66 ACTC
*
4179240 TACTTCAATTTCGAGAGGATGACGT
1 TACTTCAATTTCAAGAGGATGACGT
4179265 GTTATCCACT
Statistics
Matches: 158, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 158 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (69 bp):
TACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCA
ACTC
Found at i:4179106 original size:138 final size:138
Alignment explanation
Indices: 4178579--4179117 Score: 640
Period size: 138 Copynumber: 3.9 Consensus size: 138
4178569 GACGTTGCGT
* *
4178579 TATCC-ACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCA-AGAGAAAGAC
* * * *
4178643 TTGATATCCAACTCTACTTCAATTTC-GAGAGGATGAC-GTTGCTCT-TACTTCAATTTCGGAGA
65 -TGATATCCAACTCTACTTCAATTTCAGAGAGAAAGACTGTTCCACTCTACTTCAATTTC-GAGA
4178705 TAAAGACTTGA
128 TAAAGACTTGA
*
4178716 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCA-AGAGAAAGAC
* * * *
4178781 TTGATATCCAACTCTACTTCAATTTCA-AGAGGATGA-TGTTGCTC-CTACTTCAATTTCAGAGA
65 -TGATATCCAACTCTACTTCAATTTCAGAGAGAAAGACTGTTCCACTCTACTTCAATTTC-GAGA
*
4178843 TAAAGACCTGA
128 TAAAGACTTGA
* *
4178854 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCGGAGATAAAGAC
1 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTC-AAGAGAAAGAC
* * * *
4178919 TTGATATCCAACTCTACTTCAATTTC-GAGAGGATGAC-GTTGCTCT-TACTTCAATTTCAGAGA
65 -TGATATCCAACTCTACTTCAATTTCAGAGAGAAAGACTGTTCCACTCTACTTCAATTTC-GAGA
4178981 TAAAGACTTGA
128 TAAAGACTTGA
* * *
4178992 TATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAAGAGGATGAC-
1 TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAAGAGAAAGACT
* * *
4179056 G-T-TGC-TCT-TACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCGAG
66 GATATCCAACTCTACTTCAATTTCAGAGAGAAAGAC-TG-T-TCC-ACTCTACTTCAATTTCGAG
4179117 A
127 A
4179118 GGATGACGTT
Statistics
Matches: 370, Mismatches: 17, Indels: 30
0.89 0.04 0.07
Matches are distributed among these distances:
131 12 0.03
132 10 0.03
133 2 0.01
134 2 0.01
135 2 0.01
136 2 0.01
137 18 0.05
138 322 0.87
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (138 bp):
TATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAAGAGAAAGACT
GATATCCAACTCTACTTCAATTTCAGAGAGAAAGACTGTTCCACTCTACTTCAATTTCGAGATAA
AGACTTGA
Found at i:4179215 original size:238 final size:242
Alignment explanation
Indices: 4178785--4179302 Score: 900
Period size: 238 Copynumber: 2.1 Consensus size: 242
4178775 AAAGACTTGA
*
4178785 TATCCAACTCTACTTCAATTTCAAGAGGATGATGTTGCTCCTACTTCAATTTCAGAGATAAAGAC
1 TATCC-ACTCTACTTCAATTTCAAGAGGATGACGTTGCTCCTACTTCAATTTCAGAGATAAAGAC
*
4178850 CTGATATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCGGAGATAA
65 CTGATATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAA
* *
4178915 AGACTTGATATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAGAG
130 AGACCTGATATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAG
4178980 ATAAAGACTTGATATCCAACTCTACTTCAATTTCGAGAGGATGAC-G-
195 ATAAAGACTTGATATCCAACTCTACTTCAATTTCGAGAGGATGACGGT
* * * *
4179026 T-TGCTCT-TACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACT
1 TATCCACTCTACTTCAATTTCAAGAGGATGACGTTGCTCCTACTTCAATTTCAGAGATAAAGACC
*
4179089 TGATATCCAACTCTACTTCAATTTCGAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAA
66 TGATATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAA
4179154 GACCTGATATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGA
131 GACCTGATATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGA
4179219 TAAAGACTTGATATCCAACTCTACTTCAATTTCGAGAGGATGACGTGT
196 TAAAGACTTGATATCCAACTCTACTTCAATTTCGAGAGGATGACG-GT
*
4179267 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTG
1 TATCCACTCTACTTCAATTTCAAGAGGATGACGTTG
4179303 AGACCTGCAG
Statistics
Matches: 260, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
238 223 0.86
239 2 0.01
240 3 0.01
241 2 0.01
242 4 0.02
243 26 0.10
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (242 bp):
TATCCACTCTACTTCAATTTCAAGAGGATGACGTTGCTCCTACTTCAATTTCAGAGATAAAGACC
TGATATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAA
GACCTGATATCCAACTCTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGA
TAAAGACTTGATATCCAACTCTACTTCAATTTCGAGAGGATGACGGT
Found at i:4183427 original size:31 final size:30
Alignment explanation
Indices: 4183382--4183499 Score: 100
Period size: 31 Copynumber: 3.9 Consensus size: 30
4183372 TCTTTGGATT
* *
4183382 TTTAAATGTTAAATTTAATATTTTAATTT-TTA
1 TTTAAAT-TTAAATTTAA-A-TTAAATTTAATA
*
4183414 TTTAAATTTAAATTCAAATTAAATTTAAATA
1 TTTAAATTTAAATTTAAATTAAATTT-AATA
* * *
4183445 TTTAATTTTAAATTTAAAATAAATCTAA-A
1 TTTAAATTTAAATTTAAATTAAATTTAATA
* *
4183474 TTTAAA--TAAATTTAAAATCAATTTAA
1 TTTAAATTTAAATTTAAATTAAATTTAA
4183500 CTCAAGAGTC
Statistics
Matches: 74, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
27 18 0.24
29 13 0.18
30 3 0.04
31 33 0.45
32 7 0.09
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (30 bp):
TTTAAATTTAAATTTAAATTAAATTTAATA
Found at i:4183443 original size:48 final size:48
Alignment explanation
Indices: 4183383--4183489 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 48
4183373 CTTTGGATTT
* * ** *
4183383 TTAAATGTTAAAT-TTAATATTTTAATTTTTATTTAAATTTAAATTCAAA
1 TTAAAT-TTAAATATTAA-ATTTTAAATTTAAAATAAATCTAAATTCAAA
* *
4183432 TTAAATTTAAATATTTAATTTTAAATTTAAAATAAATCTAAATTTAAA
1 TTAAATTTAAATATTAAATTTTAAATTTAAAATAAATCTAAATTCAAA
4183480 -TAAATTTAAA
1 TTAAATTTAAA
4183490 ATCAATTTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
47 10 0.20
48 31 0.62
49 9 0.18
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.49
Consensus pattern (48 bp):
TTAAATTTAAATATTAAATTTTAAATTTAAAATAAATCTAAATTCAAA
Found at i:4183462 original size:6 final size:6
Alignment explanation
Indices: 4183382--4183489 Score: 89
Period size: 6 Copynumber: 18.0 Consensus size: 6
4183372 TCTTTGGATT
* ** *
4183382 TTTAAA TGTTAAA TTTAATA TTTTAA TTTTTA TTTAAA TTTAAA TTCAAA
1 TTTAAA T-TTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * *
4183432 -TTAAA TTTAAATA TTTAAT TTTAAA TTTAAA -ATAAA TCTAAA TTTAAA
1 TTTAAA TTT-AA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
4183480 --TAAA TTTAAA
1 TTTAAA TTTAAA
4183490 ATCAATTTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
4 4 0.05
5 8 0.10
6 52 0.63
7 15 0.18
8 4 0.05
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:4183475 original size:42 final size:43
Alignment explanation
Indices: 4183385--4183480 Score: 110
Period size: 42 Copynumber: 2.2 Consensus size: 43
4183375 TTGGATTTTT
* *
4183385 AAATGTTAAATTTAATATTTTAATTTTTATTTAAATTTAAATTC
1 AAAT-TTAAATTTAATATTTTAATTTTAATTTAAATATAAATTC
4183429 AAA-TTAAATTTAA-ATATTTAATTTTAAATTTAAA-ATAAA-TC
1 AAATTTAAATTTAATAT-TTTAATTTT-AATTTAAATATAAATTC
4183470 TAAATTTAAAT
1 -AAATTTAAAT
4183481 AAATTTAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
41 4 0.09
42 26 0.57
43 13 0.28
44 3 0.07
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (43 bp):
AAATTTAAATTTAATATTTTAATTTTAATTTAAATATAAATTC
Found at i:4184643 original size:35 final size:35
Alignment explanation
Indices: 4184604--4184672 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
4184594 ACTCGGCTTC
4184604 AATTCTACTAAAGGACTAGTTTACTATTAAAATTT
1 AATTCTACTAAAGGACTAGTTTACTATTAAAATTT
*
4184639 AATTCTACTAAAGGAGTAGTTTACTATTAAAATT
1 AATTCTACTAAAGGACTAGTTTACTATTAAAATT
4184673 GAAAAGTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (35 bp):
AATTCTACTAAAGGACTAGTTTACTATTAAAATTT
Found at i:4187027 original size:41 final size:40
Alignment explanation
Indices: 4186982--4187073 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 40
4186972 GCGGCATTTT
4186982 TAGCGGCG-TTTAGACAGAAAACGCCGCAAAAAGTAGGGCAA
1 TAGCGGCGCTTT-GACA-AAAACGCCGCAAAAAGTAGGGCAA
** * * *
4187023 TAGCGGCGCTTTTCCATAAGCGCCGCAAAAGGTAGGGCAA
1 TAGCGGCGCTTTGACAAAAACGCCGCAAAAAGTAGGGCAA
4187063 TAGCGGCGCTT
1 TAGCGGCGCTT
4187074 ATGGGAAAGC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
40 32 0.71
41 10 0.22
42 3 0.07
ACGTcount: A:0.30, C:0.23, G:0.30, T:0.16
Consensus pattern (40 bp):
TAGCGGCGCTTTGACAAAAACGCCGCAAAAAGTAGGGCAA
Found at i:4187084 original size:40 final size:40
Alignment explanation
Indices: 4186998--4187143 Score: 186
Period size: 40 Copynumber: 3.6 Consensus size: 40
4186988 CGTTTAGACA
* * **
4186998 GAAAACGCCGCAAAAAGTAGGGCAATAGCGGCGCTT-TTC
1 GAAAGCGCCGCAAAAGGTAGGGCAATAGCGGCGCTTATGG
*
4187037 CATAAGCGCCGCAAAAGGTAGGGCAATAGCGGCGCTTATGG
1 GA-AAGCGCCGCAAAAGGTAGGGCAATAGCGGCGCTTATGG
* * *
4187078 GAAAGCGCCGCTAAAGATCAGGGAAATAGCGGCGCTTATGG
1 GAAAGCGCCGCAAAAGGT-AGGGCAATAGCGGCGCTTATGG
*
4187119 GAAAGTGCCGCAAAAGGTAGGGCAA
1 GAAAGCGCCGCAAAAGGTAGGGCAA
4187144 CCGTGGGTAG
Statistics
Matches: 91, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 52 0.57
41 38 0.42
ACGTcount: A:0.33, C:0.21, G:0.33, T:0.14
Consensus pattern (40 bp):
GAAAGCGCCGCAAAAGGTAGGGCAATAGCGGCGCTTATGG
Found at i:4187225 original size:96 final size:96
Alignment explanation
Indices: 4187053--4187239 Score: 320
Period size: 96 Copynumber: 1.9 Consensus size: 96
4187043 CGCCGCAAAA
**
4187053 GGTAGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGATCAGGGAAATAGCGGCGCTTATG
1 GGTAGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGATCAAAGAAATAGCGGCGCTTATG
* *
4187118 GGAAAGTGCCGCAAAAGGTAGGGCAACCGTG
66 GGAAAGCGCCGCAAAAGATAGGGCAACCGTG
*
4187149 GGTAGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCAAAGAAATAGCGGCGCTTATG
1 GGTAGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGATCAAAGAAATAGCGGCGCTTATG
*
4187214 GGTAAGCGCCGCAAAAGATAGGGCAA
66 GGAAAGCGCCGCAAAAGATAGGGCAA
4187240 TAGTGGCGCT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 85 1.00
ACGTcount: A:0.30, C:0.19, G:0.36, T:0.14
Consensus pattern (96 bp):
GGTAGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGATCAAAGAAATAGCGGCGCTTATG
GGAAAGCGCCGCAAAAGATAGGGCAACCGTG
Found at i:4187253 original size:40 final size:41
Alignment explanation
Indices: 4187152--4187311 Score: 198
Period size: 41 Copynumber: 3.9 Consensus size: 41
4187142 AACCGTGGGT
4187152 AGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTC
1 AGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTC
** * * * *
4187193 AAAGAAATAGCGGCGCTTATGGGTAAGCGCCGCAAAAGAT-
1 AGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTC
* *
4187233 AGGGCAATAGTGGCGCTTATGGGGAAGCGCCGCTAAAGGTC
1 AGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTC
** *
4187274 AGGGCAATAGCGATGCTTAT-GAAGAAGCGCCGCTAAAG
1 AGGGCAATAGCGGCGCTTATGGGA-AAGCGCCGCTAAAG
4187312 CTCAATAATT
Statistics
Matches: 99, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
40 34 0.34
41 65 0.66
ACGTcount: A:0.31, C:0.19, G:0.34, T:0.16
Consensus pattern (41 bp):
AGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTC
Found at i:4187292 original size:81 final size:81
Alignment explanation
Indices: 4187151--4187311 Score: 225
Period size: 81 Copynumber: 2.0 Consensus size: 81
4187141 CAACCGTGGG
* *
4187151 TAGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCAAAGAAATAGCGGCGCTTATG-G
1 TAGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCAAAGAAATAGCGACGCTTATGAA
4187215 GTAAGCGCCGCAAAAGA
66 G-AAGCGCCGCAAAAGA
* * ** * *
4187232 TAGGGCAATAGTGGCGCTTATGGGGAAGCGCCGCTAAAGGTCAGGGCAATAGCGATGCTTATGAA
1 TAGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCAAAGAAATAGCGACGCTTATGAA
*
4187297 GAAGCGCCGCTAAAG
66 GAAGCGCCGCAAAAG
4187312 CTCAATAATT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
81 69 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.34, T:0.16
Consensus pattern (81 bp):
TAGGGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCAAAGAAATAGCGACGCTTATGAA
GAAGCGCCGCAAAAGA
Found at i:4187491 original size:20 final size:19
Alignment explanation
Indices: 4187446--4187497 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
4187436 GGTTTTATGA
4187446 TTTCCCCCCAAATCTTTTC
1 TTTCCCCCCAAATCTTTTC
4187465 TTTCCCCCCAAATCTTTTC
1 TTTCCCCCCAAATCTTTTC
4187484 TTTCCCCCCAAATC
1 TTTCCCCCCAAATC
4187498 CTCAAATCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.17, C:0.44, G:0.00, T:0.38
Consensus pattern (19 bp):
TTTCCCCCCAAATCTTTTC
Found at i:4188185 original size:20 final size:21
Alignment explanation
Indices: 4188136--4188185 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
4188126 ATTTCCTAAC
* * *
4188136 CCTTGGTTCTCTTTAGTTTCT
1 CCTTTGTTCTCTTCAGATTCT
4188157 CCTTT-TTCTCTTCAGATT-T
1 CCTTTGTTCTCTTCAGATTCT
4188176 CCTTTGTTCT
1 CCTTTGTTCT
4188186 ATTACCCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 6 0.24
20 15 0.60
21 4 0.16
ACGTcount: A:0.06, C:0.26, G:0.10, T:0.58
Consensus pattern (21 bp):
CCTTTGTTCTCTTCAGATTCT
Found at i:4191331 original size:42 final size:41
Alignment explanation
Indices: 4191269--4191398 Score: 179
Period size: 42 Copynumber: 3.1 Consensus size: 41
4191259 TGTTAATGGT
*
4191269 GTTTGTGGAAAAGTGTCGCTAAAGAACATGTCTTTAGCGGC
1 GTTTGTGGAAAAGTGCCGCTAAAGAACATGTCTTTAGCGGC
* * *
4191310 GTTTGTGAGAAAAGCGCCGCTAAAGAACATGACTTTCGCGGC
1 GTTTGTG-GAAAAGTGCCGCTAAAGAACATGTCTTTAGCGGC
* *
4191352 GTTTGTGGGAAAAGTGCCGCTAAAGACCATGTTCTTTTGCGGC
1 GTTTGT-GGAAAAGTGCCGCTAAAGAACATG-TCTTTAGCGGC
4191395 GTTT
1 GTTT
4191399 CTCCTCATAA
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
41 7 0.09
42 57 0.73
43 14 0.18
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (41 bp):
GTTTGTGGAAAAGTGCCGCTAAAGAACATGTCTTTAGCGGC
Found at i:4195090 original size:25 final size:25
Alignment explanation
Indices: 4195042--4195091 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
4195032 AAAGAAGAAC
*
4195042 AAAAGTAAATGAATTTAAAAAAAAA
1 AAAAGTAAATGAACTTAAAAAAAAA
*
4195067 AAAAGTAAATGAAACTTAATAAAAA
1 AAAAGTAAATG-AACTTAAAAAAAA
4195092 GGGAAAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.20
Consensus pattern (25 bp):
AAAAGTAAATGAACTTAAAAAAAAA
Found at i:4195390 original size:2 final size:2
Alignment explanation
Indices: 4195383--4195451 Score: 122
Period size: 2 Copynumber: 35.0 Consensus size: 2
4195373 AGTAGTTTAG
4195383 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
4195425 TA TA TA TA TA TA TA TA TA -A CA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4195452 CTTCATGTAC
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
1 1 0.02
2 64 0.98
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:4198533 original size:69 final size:68
Alignment explanation
Indices: 4198422--4198644 Score: 365
Period size: 69 Copynumber: 3.2 Consensus size: 68
4198412 ATTGAAGTTA
* * *
4198422 ATCTTTCCAATATCAAGTTAAGGCACTTCCCCAGTTTCTTGCGATCTGCAGAAAGCTTGATAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGC-GAAAGCTTGATAAGT
4198487 CTTG
65 CTTG
4198491 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGGAAAGCTTGATAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGC-GAAAGCTTGATAAGT
4198556 CTTG
65 CTTG
* *
4198560 ATCTTTCCAATAACAAGCTAAGGCAATTCCCGAGTTTCTTGCGATCTGCGAAAAGCTTGAGAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCG-AAAGCTTGATAAGT
4198625 CTTG
65 CTTG
*
4198629 ATCTGTCCAATAACAA
1 ATCTTTCCAATAACAA
4198645 AATTCAGGGT
Statistics
Matches: 146, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
68 1 0.01
69 145 0.99
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (68 bp):
ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGAAAGCTTGATAAGTC
TTG
Found at i:4202248 original size:12 final size:13
Alignment explanation
Indices: 4202221--4202257 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
4202211 TAAATATTAG
4202221 TTTTATTATATTTT
1 TTTTATTATA-TTT
4202235 TTTTATTATATTT
1 TTTTATTATATTT
*
4202248 TTTTAATATA
1 TTTTATTATA
4202258 ATATTAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTATTATATTT
Found at i:4202252 original size:13 final size:14
Alignment explanation
Indices: 4202221--4202251 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
4202211 TAAATATTAG
4202221 TTTTATTATATTTT
1 TTTTATTATATTTT
4202235 TTTTATTATATTTT
1 TTTTATTATATTTT
4202249 TTT
1 TTT
4202252 AATATAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTATTATATTTT
Found at i:4202257 original size:13 final size:13
Alignment explanation
Indices: 4202206--4202257 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
4202196 CACTGTATGA
4202206 TTTTTTAA-ATAT
1 TTTTTTAATATAT
* *
4202218 TAGTTTTATTATATT
1 T-TTTTTAATATA-T
*
4202233 TTTTTTATTATAT
1 TTTTTTAATATAT
4202246 TTTTTTAATATA
1 TTTTTTAATATA
4202258 ATATTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
12 1 0.03
13 17 0.52
14 13 0.39
15 2 0.06
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (13 bp):
TTTTTTAATATAT
Found at i:4202261 original size:16 final size:14
Alignment explanation
Indices: 4202206--4202262 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 14
4202196 CACTGTATGA
4202206 TTTTTTA-AATATT
1 TTTTTTATAATATT
** *
4202219 AGTTTTATTATATT
1 TTTTTTATAATATT
*
4202233 TTTTTTATTATATT
1 TTTTTTATAATATT
4202247 TTTTTAATATAATATT
1 TTTTT--TATAATATT
4202263 AAAAATTCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
13 5 0.14
14 22 0.63
16 8 0.23
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (14 bp):
TTTTTTATAATATT
Found at i:4202866 original size:14 final size:14
Alignment explanation
Indices: 4202829--4202873 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
4202819 TATTTTACCC
4202829 TAAATCTTAAA-CT
1 TAAATCTTAAACCT
* *
4202842 CAAAACTTAAACCT
1 TAAATCTTAAACCT
4202856 TAAATCTTAAACCT
1 TAAATCTTAAACCT
4202870 TAAA
1 TAAA
4202874 CTCTAAATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
13 9 0.33
14 18 0.67
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAATCTTAAACCT
Found at i:4202873 original size:21 final size:20
Alignment explanation
Indices: 4202829--4202884 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
4202819 TATTTTACCC
*
4202829 TAAATCTTAAA-CTCAAAACT
1 TAAA-CTTAAATCTTAAAACT
*
4202849 TAAACCTTAAATCTTAAACCT
1 TAAA-CTTAAATCTTAAAACT
4202870 TAAACTCTAAATCTT
1 TAAACT-TAAATCTT
4202885 GAGGTTCAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.39
21 19 0.61
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (20 bp):
TAAACTTAAATCTTAAAACT
Found at i:4202880 original size:14 final size:14
Alignment explanation
Indices: 4202844--4202880 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
4202834 CTTAAACTCA
4202844 AAACT-TAAACCTT
1 AAACTCTAAACCTT
4202857 AAA-TCTTAAACCTT
1 AAACTC-TAAACCTT
4202871 AAACTCTAAA
1 AAACTCTAAA
4202881 TCTTGAGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.05
13 3 0.14
14 15 0.71
15 2 0.10
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
AAACTCTAAACCTT
Found at i:4204984 original size:477 final size:474
Alignment explanation
Indices: 4204077--4205036 Score: 1564
Period size: 477 Copynumber: 2.0 Consensus size: 474
4204067 TAAATATTAA
* *
4204077 TTAAAACCAGTATTATATTAAAATAATAATAATAATGCAACTAGTTAGATGTTAAAATTAGTATT
1 TTAAAATCAGTATTATATTAAAATAATAATAATAATGCAACTAGTTAGATGTTAAAATCAG--TT
*
4204142 ATTACCTTGCATTTTGGTAGGATGTTAGAATCATTAAATAAGAATCTTAGAGTAGACCAATGCAT
64 ATTACATTGCATTTTGGTAGGATGTTAGAATCATTAAATAAGAATCTTAGAGTAGACCAATGCAT
4204207 ATTCTAAATAATACAAGCCAATTTGTATGGTTGGAGATATTAATTGTATGATATAAGAAGGTGGG
129 ATTCTAAATAATACAAGCCAATTTGTATGGTTGGAGATATTAATTGTATGATATAAGAAGGTGGG
* * *
4204272 CCAATGTAATTTCCAGGTCTTGCTGATGACTTAGTTCTACTGTATGTCTACATTTCATATTTTAA
194 CCAATGTAATTTCCAGGTCTTACTGATGACTTACTTCTACTGTATGTCTACATTTCATATTTCAA
4204337 TGTACATCTTTAGTGATTAATGTTATTGATTAATGGACGTGGAAAAAGTTAACTCATCTAAATAT
259 TGTACATCTTTAGTGATTAATGTTATTGATTAATGGACGTGGAAAAAGTTAACTCATCTAAATAT
* *
4204402 TTATTTTAAAATATTTGAATTTAAACAAATTAATTGAATAGTTAAAATATATCTACATCAAATTA
324 TTATTTGAAAATATTTGAATTTAAACAAATTAATTGAATAATTAAAATATATCTACATCAAATTA
* * *
4204467 ACATAGGATGAGATTCAAACTTAAAATTTTAAATTTTTAAATTAAAATTTTACTAAAAATTCGAA
389 ACATAGCATGAGATTCAAACTTAAAATTTCAAAATTTTAAATTAAAATTTTACTAAAAATTC-AA
*
4204532 AATTATTTTTTATACAATAAAT
453 AATTATTTTTTATACAATAAAC
*
4204554 TTAAAATCAGTATTATATTAAAATAATAATAATAATAATGCAACTGGTTAGATGTTAAAATCAG-
1 TTAAAATCAGTATTATATT--AA-AATAATAATAATAATGCAACTAGTTAGATGTTAAAATCAGT
* * * *
4204618 TATTACATTGCATTTTGGTTGGATGTTGGAATCATTAACTATGAATCTTAGAGTAGACCAATGCA
63 TATTACATTGCATTTTGGTAGGATGTTAGAATCATTAAATAAGAATCTTAGAGTAGACCAATGCA
* * *
4204683 TATTCTAAATAATACAAGTCAATTTGTATGGTTGGAGATATTAATTTTATGATTTAAGAAGGTGG
128 TATTCTAAATAATACAAGCCAATTTGTATGGTTGGAGATATTAATTGTATGATATAAGAAGGTGG
* *
4204748 GCCAATGTGATTTCTAGGTCTTACTGATGACTTACTTCTACTGTATGTCTACATTTCATATTTCA
193 GCCAATGTAATTTCCAGGTCTTACTGATGACTTACTTCTACTGTATGTCTACATTTCATATTTCA
* * *
4204813 ATGTATATTTTTAGTGATTAATGTTATTGATTAATGGACGTGGAAAAAGTTAACTCATCTGAATA
258 ATGTACATCTTTAGTGATTAATGTTATTGATTAATGGACGTGGAAAAAGTTAACTCATCTAAATA
* *
4204878 TTTATTTGAAAATATTTGAATTTGAATAAATTAATTGAATAATT-AAATCATATCTACATCAAAT
323 TTTATTTGAAAATATTTGAATTTAAACAAATTAATTGAATAATTAAAAT-ATATCTACATCAAAT
* * * *
4204942 TACCATAGCATGAGATTTAAACTTGAGATTTCAAAATTTTAAATTAAAATTTTACTAAAAATTCA
387 TAACATAGCATGAGATTCAAACTTAAAATTTCAAAATTTTAAATTAAAATTTTACTAAAAATTCA
4205007 AAATTATTTTTTATACAATAAAC
452 AAATTATTTTTTATACAATAAAC
4205030 TTAAAAT
1 TTAAAAT
4205037 TACTCATACC
Statistics
Matches: 448, Mismatches: 31, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
476 34 0.08
477 374 0.83
479 2 0.00
480 38 0.08
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (474 bp):
TTAAAATCAGTATTATATTAAAATAATAATAATAATGCAACTAGTTAGATGTTAAAATCAGTTAT
TACATTGCATTTTGGTAGGATGTTAGAATCATTAAATAAGAATCTTAGAGTAGACCAATGCATAT
TCTAAATAATACAAGCCAATTTGTATGGTTGGAGATATTAATTGTATGATATAAGAAGGTGGGCC
AATGTAATTTCCAGGTCTTACTGATGACTTACTTCTACTGTATGTCTACATTTCATATTTCAATG
TACATCTTTAGTGATTAATGTTATTGATTAATGGACGTGGAAAAAGTTAACTCATCTAAATATTT
ATTTGAAAATATTTGAATTTAAACAAATTAATTGAATAATTAAAATATATCTACATCAAATTAAC
ATAGCATGAGATTCAAACTTAAAATTTCAAAATTTTAAATTAAAATTTTACTAAAAATTCAAAAT
TATTTTTTATACAATAAAC
Found at i:4212509 original size:16 final size:16
Alignment explanation
Indices: 4212487--4212532 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
4212477 GATAATGTCA
4212487 TTATTTTTCT-TTTCT
1 TTATTTTTCTATTTCT
4212502 TCTATTTTTCTATTTCT
1 T-TATTTTTCTATTTCT
*
4212519 TTGTTTTTCTATTT
1 TTATTTTTCTATTT
4212533 TATACCCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 1 0.04
16 21 0.75
17 6 0.21
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (16 bp):
TTATTTTTCTATTTCT
Found at i:4212512 original size:8 final size:8
Alignment explanation
Indices: 4212488--4212533 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
4212478 ATAATGTCAT
4212488 TATTTTTC
1 TATTTTTC
4212496 T-TTTCTTC
1 TATTT-TTC
4212504 TATTTTTC
1 TATTTTTC
4212512 TATTTCTT-
1 TATTT-TTC
*
4212520 TGTTTTTC
1 TATTTTTC
4212528 TATTTT
1 TATTTT
4212534 ATACCCTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
7 5 0.16
8 22 0.69
9 5 0.16
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (8 bp):
TATTTTTC
Found at i:4213483 original size:37 final size:37
Alignment explanation
Indices: 4213433--4213507 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
4213423 GTTAAATATA
4213433 AAATTAATATTTGAACTTGTCCACTTCTTTCAGATTG
1 AAATTAATATTTGAACTTGTCCACTTCTTTCAGATTG
* *
4213470 AAATTAGTATTTGAACTTGTCTACTTCTTTCAGATTG
1 AAATTAATATTTGAACTTGTCCACTTCTTTCAGATTG
4213507 A
1 A
4213508 TACTTCTGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (37 bp):
AAATTAATATTTGAACTTGTCCACTTCTTTCAGATTG
Found at i:4214203 original size:19 final size:20
Alignment explanation
Indices: 4214166--4214204 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
4214156 CTAGTACTCC
4214166 TTTATCTTTCTTGTCTTTCT
1 TTTATCTTTCTTGTCTTTCT
* *
4214186 TTTATTTTTGTTGT-TTTCT
1 TTTATCTTTCTTGTCTTTCT
4214205 CAATTTAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.05, C:0.13, G:0.08, T:0.74
Consensus pattern (20 bp):
TTTATCTTTCTTGTCTTTCT
Found at i:4216832 original size:69 final size:69
Alignment explanation
Indices: 4216721--4216874 Score: 254
Period size: 69 Copynumber: 2.2 Consensus size: 69
4216711 ACTGAAGTTA
* * * * *
4216721 ATCTTTCCAATATCAAGTTAAGGCAATTCCCCAGTTTCTTGCGATCTGCGGAAAGCTTGATAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTACGAAAAGCTTGAGAAGT
4216786 CTTG
66 CTTG
*
4216790 ATCTTTCCAATAACAAGCTAAGGCAATTCCCGAGTTTCTTGCGATCTACGAAAAGCTTGAGAAGT
1 ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTACGAAAAGCTTGAGAAGT
4216855 CTTG
66 CTTG
4216859 ATCTTTCCAATAACAA
1 ATCTTTCCAATAACAA
4216875 AATTCAGGGT
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 79 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (69 bp):
ATCTTTCCAATAACAAGCTAAGGCAATTCCCCAGTTTCTTGCGATCTACGAAAAGCTTGAGAAGT
CTTG
Found at i:4223095 original size:75 final size:75
Alignment explanation
Indices: 4222934--4223096 Score: 195
Period size: 75 Copynumber: 2.2 Consensus size: 75
4222924 ATCTGATCGA
* * *
4222934 ACTTGATCTTTCATCAAATAATTTCAGTGGTGTCATCAAGTCAGATATGCTTTTAAAGTTGAAGA
1 ACTTGATCTTTCATCAAATAATTTCAGTGGTGCCATCAAGTCAGATATGCTTTCAAAGCTGAAGA
4222999 ACCTTGAAAC
66 ACCTTGAAAC
* * * * *
4223009 AC-TCATTCTTTCGTCAAATAATTTTAGTGGTGCCATCAAGTTAGATGTGCTTTCAAAGCTGAAG
1 ACTTGA-TCTTTCATCAAATAATTTCAGTGGTGCCATCAAGTCAGATATGCTTTCAAAGCTGAAG
*
4223073 AATCTT-ACAAC
65 AACCTTGA-AAC
* *
4223084 GCTTGAGCTTTCA
1 ACTTGATCTTTCA
4223097 AATAACAAGT
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
74 3 0.04
75 67 0.93
76 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35
Consensus pattern (75 bp):
ACTTGATCTTTCATCAAATAATTTCAGTGGTGCCATCAAGTCAGATATGCTTTCAAAGCTGAAGA
ACCTTGAAAC
Found at i:4250112 original size:6 final size:6
Alignment explanation
Indices: 4250098--4250200 Score: 77
Period size: 6 Copynumber: 16.8 Consensus size: 6
4250088 TTTAAATTTG
* * *
4250098 TTTAAA TTTAGA TTT-AT TTTAAA TTTAAAA TTAAATA TTTAAA TTT-AA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA TTTAA-A TTTAAA TTTAAA
* * * *
4250146 TTTGAA TTTAAA TTTAAA -TAAAGA TTAAAA TATTAAA TTTAACA TTAAAA
1 TTTAAA TTTAAA TTTAAA TTTAA-A TTTAAA T-TTAAA TTTAA-A TTTAAA
4250196 TTTAA
1 TTTAA
4250201 GAGTCCAATG
Statistics
Matches: 78, Mismatches: 11, Indels: 16
0.74 0.10 0.15
Matches are distributed among these distances:
5 11 0.14
6 43 0.55
7 24 0.31
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.47
Consensus pattern (6 bp):
TTTAAA
Found at i:4250131 original size:12 final size:12
Alignment explanation
Indices: 4250116--4250200 Score: 64
Period size: 13 Copynumber: 6.8 Consensus size: 12
4250106 TAGATTTATT
4250116 TTAAATTTAAAA
1 TTAAATTTAAAA
*
4250128 TTAAATATTTAAA
1 TTAAAT-TTAAAA
* * *
4250141 TTTAATTTGAAT
1 TTAAATTTAAAA
4250153 TTAAATTT-AAA
1 TTAAATTTAAAA
* *
4250164 TAAAGATTAAAATA
1 TTAA-ATTTAAA-A
*
4250178 TTAAATTTAACA
1 TTAAATTTAAAA
4250190 TTAAAATTTAA
1 TT-AAATTTAA
4250201 GAGTCCAATG
Statistics
Matches: 57, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
11 5 0.09
12 23 0.40
13 25 0.44
14 4 0.07
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.44
Consensus pattern (12 bp):
TTAAATTTAAAA
Found at i:4250144 original size:31 final size:31
Alignment explanation
Indices: 4250103--4250165 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
4250093 ATTTGTTTAA
* *
4250103 ATTTAGATTTATTTTAAATTTAAAATTAAAT
1 ATTTAAATTTAATTTAAATTTAAAATTAAAT
* *
4250134 ATTTAAATTTAATTTGAATTTAAATTTAAAT
1 ATTTAAATTTAATTTAAATTTAAAATTAAAT
4250165 A
1 A
4250166 AAGATTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (31 bp):
ATTTAAATTTAATTTAAATTTAAAATTAAAT
Found at i:4250153 original size:11 final size:11
Alignment explanation
Indices: 4250102--4250164 Score: 51
Period size: 11 Copynumber: 5.8 Consensus size: 11
4250092 AATTTGTTTA
*
4250102 AATTTAGATTT
1 AATTTAAATTT
*
4250113 ATTTTAAATTT
1 AATTTAAATTT
*
4250124 AAAATTAAA--T
1 -AATTTAAATTT
4250134 -ATTTAAATTT
1 AATTTAAATTT
*
4250144 AATTTGAATTT
1 AATTTAAATTT
4250155 AAATTTAAAT
1 -AATTTAAAT
4250165 AAAGATTAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
8 6 0.15
10 2 0.05
11 18 0.45
12 14 0.35
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (11 bp):
AATTTAAATTT
Found at i:4250185 original size:37 final size:37
Alignment explanation
Indices: 4250115--4250200 Score: 95
Period size: 37 Copynumber: 2.3 Consensus size: 37
4250105 TTAGATTTAT
* * *
4250115 TTTAAATTTAAAATTAAATATTTAAATTTAATTTGA-A
1 TTTAAATTT-AAATTAAAGATTAAAATTTAATTTAACA
4250152 TTTAAATTTAAA-TAAAGATTAAAATATTAAATTTAACA
1 TTTAAATTTAAATTAAAGATTAAAAT-TT-AATTTAACA
*
4250190 TTAAAATTTAA
1 TTTAAATTTAA
4250201 GAGTCCAATG
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
35 11 0.26
36 5 0.12
37 15 0.36
38 11 0.26
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.44
Consensus pattern (37 bp):
TTTAAATTTAAATTAAAGATTAAAATTTAATTTAACA
Found at i:4251452 original size:27 final size:26
Alignment explanation
Indices: 4251415--4251465 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
4251405 TGCGGCTGCG
*
4251415 GGCAGGAGCGGAGTGTGACCGGCGGC
1 GGCAGGAGCGGAGCGTGACCGGCGGC
*
4251441 GGCAGGATGCGGCGCGTGACCGGCG
1 GGCAGGA-GCGGAGCGTGACCGGCG
4251466 ACGCGCTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.14, C:0.25, G:0.53, T:0.08
Consensus pattern (26 bp):
GGCAGGAGCGGAGCGTGACCGGCGGC
Found at i:4252060 original size:30 final size:30
Alignment explanation
Indices: 4252015--4252521 Score: 743
Period size: 30 Copynumber: 16.9 Consensus size: 30
4252005 CCCCAAACAA
* *
4252015 TCCAGAAATTGTATTTTAACCCCAAAACTTT
1 TCCA-AAATTATATTTTGACCCCAAAACTTT
*
4252046 TCCAAAATTATATTTTGACCCTAAAACTTT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
*
4252076 TCTAAAATTATATTTTGACCCCAAAACTTT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
*
4252106 TCCAAAATTATATTTTAACCCCAAAACTTT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
*
4252136 TCCAAAATTACATTTTGACCCCAAAAC-TT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
4252165 TCCAAAAATTATATTTTGACCCCAAAACTTT
1 TCC-AAAATTATATTTTGACCCCAAAACTTT
4252196 TCCAAAATTATATTTTGACCCCAAAACTTT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
*
4252226 TCCAAAATTACATTTTGACCCCAAAAC-TT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
4252255 TCCAAAAATTATATTTTGACCCCAAAACTTT
1 TCC-AAAATTATATTTTGACCCCAAAACTTT
4252286 TCCAAAATTATATTTTGACCCCAAAACTTT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
* *
4252316 TCCAAAATTACATTTTGACCCTAAAAC-TT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
* *
4252345 TCCAAAAATTATATTTTGACCCTAAAACATT
1 TCC-AAAATTATATTTTGACCCCAAAACTTT
* *
4252376 TCCAAAATTACATTTTGACCCTAAAACTTT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
* *
4252406 TCAAAAATTACATTTTGACCCCAAAAC-TT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
* *
4252435 TCCAAAAATTATATTTTAACCCTAAAACTTT
1 TCC-AAAATTATATTTTGACCCCAAAACTTT
* * *
4252466 TCAAAAATTACATTTTGACCCTAAAACTTT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
* *
4252496 TCAAAAATTACATTTTGACCCCAAAA
1 TCCAAAATTATATTTTGACCCCAAAA
4252522 ATTTCCTAAA
Statistics
Matches: 441, Mismatches: 27, Indels: 17
0.91 0.06 0.04
Matches are distributed among these distances:
29 19 0.04
30 399 0.90
31 23 0.05
ACGTcount: A:0.39, C:0.23, G:0.03, T:0.35
Consensus pattern (30 bp):
TCCAAAATTATATTTTGACCCCAAAACTTT
Found at i:4252173 original size:90 final size:90
Alignment explanation
Indices: 4252015--4252527 Score: 837
Period size: 90 Copynumber: 5.7 Consensus size: 90
4252005 CCCCAAACAA
* * * * * *
4252015 TCCAGAAATTGTATTTTAACCCCAAAACTTTTCCAAAATTATATTTTGACCCTAAAACTTTTCTA
1 TCCA-AAATTATATTTTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCCAA
4252080 AAATTATATTTTGACCCCAAAACTTT
65 AAATTATATTTTGACCCCAAAACTTT
*
4252106 TCCAAAATTATATTTTAACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCCAAA
1 TCCAAAATTATATTTTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCCAAA
4252171 AATTATATTTTGACCCCAAAACTTT
66 AATTATATTTTGACCCCAAAACTTT
4252196 TCCAAAATTATATTTTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCCAAA
1 TCCAAAATTATATTTTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCCAAA
4252261 AATTATATTTTGACCCCAAAACTTT
66 AATTATATTTTGACCCCAAAACTTT
*
4252286 TCCAAAATTATATTTTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAACTTTCCAAA
1 TCCAAAATTATATTTTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCCAAA
* *
4252351 AATTATATTTTGACCCTAAAACATT
66 AATTATATTTTGACCCCAAAACTTT
* * *
4252376 TCCAAAATTACATTTTGACCCTAAAACTTTTCAAAAATTACATTTTGACCCCAAAACTTTCCAAA
1 TCCAAAATTATATTTTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCCAAA
* *
4252441 AATTATATTTTAACCCTAAAACTTT
66 AATTATATTTTGACCCCAAAACTTT
* * * * *
4252466 TCAAAAATTACATTTTGACCCTAAAACTTTTCAAAAATTACATTTTGACCCCAAAAATTTCC
1 TCCAAAATTATATTTTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCC
4252528 TAAACCCATT
Statistics
Matches: 405, Mismatches: 17, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
90 401 0.99
91 4 0.01
ACGTcount: A:0.39, C:0.23, G:0.03, T:0.35
Consensus pattern (90 bp):
TCCAAAATTATATTTTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCCAAA
AATTATATTTTGACCCCAAAACTTT
Found at i:4252567 original size:30 final size:30
Alignment explanation
Indices: 4252533--4252628 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
4252523 TTTCCTAAAC
4252533 CCATTTTAACCCCGATTTCACCAAAAATTA
1 CCATTTTAACCCCGATTTCACCAAAAATTA
* ** ** *
4252563 CCATTTTACCCCCGA-AGCTTCTAAAATT-
1 CCATTTTAACCCCGATTTCACCAAAAATTA
* *
4252591 CCATTTTTAATCCCGATTTCACCGAAAATTA
1 CCA-TTTTAACCCCGATTTCACCAAAAATTA
4252622 CCATTTT
1 CCATTTT
4252629 GCCCCCGGGT
Statistics
Matches: 50, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
28 3 0.06
29 18 0.36
30 26 0.52
31 3 0.06
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.34
Consensus pattern (30 bp):
CCATTTTAACCCCGATTTCACCAAAAATTA
Found at i:4252657 original size:59 final size:58
Alignment explanation
Indices: 4252536--4252670 Score: 164
Period size: 59 Copynumber: 2.3 Consensus size: 58
4252526 CCTAAACCCA
*
4252536 TTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCAT
1 TTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCG-AGCTTCCAAAATTCCAT
* * * * * *
4252595 TTTTAATCCCGATTTCACCGAAAATTACCATTTTGCCCCCG-GGTATCCATAAGTTCCGT
1 TTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAGCT-TCCA-AAATTCCAT
*
4252654 TTTTCACCCCGATTTCA
1 TTTTAACCCCGATTTCA
4252671 TCATTTATCA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
57 2 0.03
58 3 0.05
59 60 0.92
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (58 bp):
TTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAGCTTCCAAAATTCCAT
Done.