Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 122 of 126
Found at i:36612864 original size:23 final size:22
Alignment explanation
Indices: 36612833--36612926 Score: 127
Period size: 23 Copynumber: 4.2 Consensus size: 22
36612823 TTCAATGAAT
*
36612833 AAAAGAAAAGAAAAAAGAAAAA
1 AAAAAAAAAGAAAAAAGAAAAA
*
36612855 AAAAACAAAA-AGAAAAATAAAAA
1 AAAAA-AAAAGA-AAAAAGAAAAA
*
36612878 AAGAAAAAAGAAAAAAGAAAAA
1 AAAAAAAAAGAAAAAAGAAAAA
36612900 AAGAAAAAAAGAAAAAAGAAAAA
1 AA-AAAAAAAGAAAAAAGAAAAA
36612923 AAAA
1 AAAA
36612927 GGAGAGGTCG
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
22 23 0.37
23 40 0.63
ACGTcount: A:0.87, C:0.01, G:0.11, T:0.01
Consensus pattern (22 bp):
AAAAAAAAAGAAAAAAGAAAAA
Found at i:36612885 original size:30 final size:30
Alignment explanation
Indices: 36612833--36612925 Score: 129
Period size: 30 Copynumber: 3.1 Consensus size: 30
36612823 TTCAATGAAT
*
36612833 AAAAG-AAAAG-AAAAAAGAAAAAAAAAACA
1 AAAAGAAAAAGAAAAAAAGAAAAAAGAAA-A
*
36612862 AAAAGAAAAATAAAAAAAGAAAAAAGAAAA
1 AAAAGAAAAAGAAAAAAAGAAAAAAGAAAA
36612892 AAGAA-AAAAAGAAAAAAAGAAAAAAGAAAA
1 AA-AAGAAAAAGAAAAAAAGAAAAAAGAAAA
36612922 AAAA
1 AAAA
36612926 AGGAGAGGTC
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
29 7 0.12
30 33 0.57
31 18 0.31
ACGTcount: A:0.87, C:0.01, G:0.11, T:0.01
Consensus pattern (30 bp):
AAAAGAAAAAGAAAAAAAGAAAAAAGAAAA
Found at i:36612887 original size:45 final size:45
Alignment explanation
Indices: 36612838--36612924 Score: 140
Period size: 45 Copynumber: 1.9 Consensus size: 45
36612828 TGAATAAAAG
*
36612838 AAAAGAAAAAAGAAAAAAAAAACAAAAAG-AAAAATAAAAAAAGAA
1 AAAAGAAAAAAGAAAAAAAAAA-AAAAAGAAAAAAGAAAAAAAGAA
*
36612883 AAAAGAAAAAAGAAAAAAAGAAAAAAAGAAAAAAGAAAAAAA
1 AAAAGAAAAAAGAAAAAAAAAAAAAAAGAAAAAAGAAAAAAA
36612925 AAGGAGAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 6 0.15
45 33 0.85
ACGTcount: A:0.87, C:0.01, G:0.10, T:0.01
Consensus pattern (45 bp):
AAAAGAAAAAAGAAAAAAAAAAAAAAAGAAAAAAGAAAAAAAGAA
Found at i:36614225 original size:50 final size:50
Alignment explanation
Indices: 36614150--36614417 Score: 161
Period size: 50 Copynumber: 5.3 Consensus size: 50
36614140 AAACAAGACG
* * * ***
36614150 GGAAAGATCTAAGACCGCAATGGCGGATCCAGTATTGCAAAGATAC-AAAA
1 GGAAAGGTCTAAG-TCGCAACGGCGGATCCAGTACCACAAAGATACAAAAA
36614200 GGAAAAGGTCTAAGTCGCAACGGCGGATCCAGTACCACAAAGATACAAAAA
1 GG-AAAGGTCTAAGTCGCAACGGCGGATCCAGTACCACAAAGATACAAAAA
* * * * **
36614251 GGAAAGGTCTAAGTTGCAACGGC-AAACCGTGTACCTTAGAAG--ACAAAAA
1 GGAAAGGTCTAAGTCGCAACGGCGGATCC-AGTACCACA-AAGATACAAAAA
* * * ** * ** * *
36614300 GGGAAAGATTTAAGCCGCAACGATGAATCCAGTACCATGAAG--ACATGAAG
1 -GGAAAGGTCTAAGTCGCAACGGCGGATCCAGTACCACAAAGATACA-AAAA
* * * * *
36614350 GGAAAGATCTAAGACCGTAACGGCGGATCCAATACTACAAAGATACAAAAGA
1 GGAAAGGTCTAAG-TCGCAACGGCGGATCCAGTACCACAAAGATACAAAA-A
* *
36614402 TGAAAGGTTTAAGTCG
1 GGAAAGGTCTAAGTCG
36614418 TAATAGCGAA
Statistics
Matches: 168, Mismatches: 39, Indels: 21
0.74 0.17 0.09
Matches are distributed among these distances:
49 28 0.17
50 100 0.60
51 27 0.16
52 13 0.08
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16
Consensus pattern (50 bp):
GGAAAGGTCTAAGTCGCAACGGCGGATCCAGTACCACAAAGATACAAAAA
Found at i:36615162 original size:206 final size:206
Alignment explanation
Indices: 36614816--36615480 Score: 1009
Period size: 201 Copynumber: 3.3 Consensus size: 206
36614806 CCAACTCGAG
*
36614816 GCTCAATGTGAGCAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
1 GCTCAATGTGAGCAAATCTTCAAACCCCAACTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
*
36614881 AT-AAGTGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATA
66 ATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATA
* * *
36614945 CAAAGAAGCGGATTGAAACAAACGAAGCAGTCATCTTCCTGATGAGGCACAGAGAAGAAGACCAA
131 CAGAGAAGCGGATTGAAACAAACGAAGCGGTCATCTTCCTGATGAGACACAGAGAAGAAGACCAA
*
36615010 ATCAAACCTAC
196 ATCAAACCCAC
* *
36615021 GCTCGATGTGAGCAAATCTTCGAACCCCAACTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
1 GCTCAATGTGAGCAAATCTTCAAACCCCAACTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
* * *
36615086 ATAAAATGGTTAGCTTCCTGATGAGATACTGATAAGTGAACCAAATTCGTCTTCCTGATGAGATA
66 ATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATA
** * * * * *
36615151 CAGAGAAGCGGATTGAAACAAGTGAGGTGGTCATCTTCCTGATGAGATACAGAGAAGTATACC-A
131 CAGAGAAGCGGATTGAAACAAACGAAGCGGTCATCTTCCTGATGAGACACAGAGAAGAAGACCAA
* * *
36615215 A-C---TCGAG
196 ATCAAACCCAC
* *
36615222 GCTCAATGTGAGCAAATCTTCGAACCCCAACTTCCTGATGAGATATTGAGAAGCAGGTCGAAGCA
1 GCTCAATGTGAGCAAATCTTCAAACCCCAACTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
* *
36615287 ATAAAATGGTTAGCTTCCTGATGAGATACTGGGAAGTGGACCAAATTTATCTTCCTGATGAGATA
66 ATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATA
*
36615352 CAGAGAAGCGGATTGAAACAAACGACGCGGTCATCTTCCTGATGAGACACAGAGAAGAAGACCAA
131 CAGAGAAGCGGATTGAAACAAACGAAGCGGTCATCTTCCTGATGAGACACAGAGAAGAAGACCAA
36615417 ATCAAACCCAC
196 ATCAAACCCAC
* * * * *
36615428 GCTCGATATGAGCAAATCTTTAAACCCCAGCTTCTTGATGAGATACTGAGAAG
1 GCTCAATGTGAGCAAATCTTCAAACCCCAACTTCCTGATGAGATACTGAGAAG
36615481 TGTACCAAAT
Statistics
Matches: 410, Mismatches: 44, Indels: 11
0.88 0.09 0.02
Matches are distributed among these distances:
201 181 0.44
202 2 0.00
203 1 0.00
204 1 0.00
205 66 0.16
206 159 0.39
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (206 bp):
GCTCAATGTGAGCAAATCTTCAAACCCCAACTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
ATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATA
CAGAGAAGCGGATTGAAACAAACGAAGCGGTCATCTTCCTGATGAGACACAGAGAAGAAGACCAA
ATCAAACCCAC
Found at i:36615555 original size:359 final size:359
Alignment explanation
Indices: 36615097--36615767 Score: 1101
Period size: 359 Copynumber: 1.9 Consensus size: 359
36615087 TAAAATGGTT
* *
36615097 AGCTTCCTGATGAGATACTGATAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGG
1 AGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAG
* *
36615162 ATTGAAACAAGTGAGGTGGTCATCTTCCTGATGAGATACAGAGAAGTATACCAAC-TCGAGGCTC
66 ATTGAAACAAGTGAGGCGGTCATCTTCATGATGAGATACAGAGAAGTATACCAACAT-GAGGCTC
* * *
36615226 AATGTGAGCAAATCTTCGAACCCCAACTTCCTGATGAGATATTGAGAAGCAGGTCGAAGCAATAA
130 AATGCGAGCAAATCTTCGAACCCCAACTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAATAA
* *
36615291 AATGGTTAGCTTCCTGATGAGATACTGGGAAGTGGACCAAATTTATCTTCCTGATGAGATACAGA
195 AATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGA
* *
36615356 GAAGCGGATTGAAACAAACGACGCGGTCATCTTCCTGATGAGACACAGAGAAGAAGACCAAATCA
260 GAAGCGGATTAAAACAAACGACGCGGTCATCTTCCTGATGAGACACAAAGAAGAAGACCAAATCA
36615421 AACCCACGCTCGATATGAGCAAATCTTTAAACCCC
325 AACCCACGCTCGATATGAGCAAATCTTTAAACCCC
* * *
36615456 AGCTTCTTGATGAGATACTGAGAAGTGTACCAAATTCGTCTTCCTGATGAGATACAGAGATGCAG
1 AGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAG
** *
36615521 ATTGAAACAAGTGAGGCGGTCATCTTCATGATGAGATACAGAGAAGTATACCAACATGATTCTCG
66 ATTGAAACAAGTGAGGCGGTCATCTTCATGATGAGATACAGAGAAGTATACCAACATGAGGCTCA
*
36615586 ATGCGAGCAAATCTTCGAACCCCAGCTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAATAAA
131 ATGCGAGCAAATCTTCGAACCCCAACTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAATAAA
* *
36615651 ATGGTTAGCTTCCTGATGAGATATTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAG
196 ATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGAG
** * * *
36615716 AAGCGGATTAAAACAAGTGATGGGGTCATCTTCCTGATGAGATACAAAGAAG
261 AAGCGGATTAAAACAAACGACGCGGTCATCTTCCTGATGAGACACAAAGAAG
36615768 TATACCAACT
Statistics
Matches: 286, Mismatches: 25, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
359 285 1.00
360 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (359 bp):
AGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAG
ATTGAAACAAGTGAGGCGGTCATCTTCATGATGAGATACAGAGAAGTATACCAACATGAGGCTCA
ATGCGAGCAAATCTTCGAACCCCAACTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAATAAA
ATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGAG
AAGCGGATTAAAACAAACGACGCGGTCATCTTCCTGATGAGACACAAAGAAGAAGACCAAATCAA
ACCCACGCTCGATATGAGCAAATCTTTAAACCCC
Found at i:36615912 original size:200 final size:201
Alignment explanation
Indices: 36615456--36616163 Score: 970
Period size: 200 Copynumber: 3.5 Consensus size: 201
36615446 TTTAAACCCC
* * * *
36615456 AGCTTCTTGATGAGATACTGAGAAGTGTACCAAATTCGTCTTCCTGATGAGATACAGAGATGCAG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGG
* * * * * **
36615521 ATTGAAACAAGTGAGGCGGTCATCTTCATGATGAGATACAGAGAAGTATACCAACATGATTCTCG
66 ATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGATACAAAGAAGTATACCAACTTGAAGCTCG
* * *
36615586 ATGCGAGCAAATCTTCGAACCCCAGCTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAATAAA
131 ATGCGAGTAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAA
36615651 ATGGTT
196 ATGGTT
*
36615657 AGCTTCCTGATGAGATATTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGG
* *
36615722 ATTAAAACAAGTGATGGGGTCATCTTCCTGATGAGATACAAAGAAGTATACCAACTTGACGCTCG
66 ATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGATACAAAGAAGTATACCAACTTGAAGCTCG
* *
36615787 ATGCGAGTAAATCTTCCAA-CCCAGCTTCCTGATGAGATATTGAGAAGCAGGTCGAAGCAATAAA
131 ATGCGAGTAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAA
36615851 ATGGTT
196 ATGGTT
* * *
36615857 AGCCTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTCATGAGATACAGAGAAGCGA
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGG
* ** * * * *
36615922 ATTGAAACAAACGATGCGGTCATCTTCTTGATGAGATACTGAGAAGAAGACCAAATCAAACTT-A
66 ATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGATAC--A-AAGAAG--TATA-CCAACTTGA
**
36615986 AGCTCGATATGAGTAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
125 AGCTCGATGCGAGTAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
*
36616051 AATAAAGTGGTT
190 AATAAAATGGTT
* * * * * * * * *
36616063 AGCTTCTTGATGAGATACAGAGAAGCGGACCAAATCCGTCTTCCGGATGAAACACAAAGAAGTGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGG
*
36616128 ATCAAAACAAGTGATGCGGTCATCTTCCTGATGAGA
66 ATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGA
36616164 CACTGAGAAG
Statistics
Matches: 448, Mismatches: 52, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
200 144 0.32
201 134 0.30
202 1 0.00
203 6 0.01
205 24 0.05
206 139 0.31
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (201 bp):
AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGG
ATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGATACAAAGAAGTATACCAACTTGAAGCTCG
ATGCGAGTAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAA
ATGGTT
Found at i:36616014 original size:559 final size:563
Alignment explanation
Indices: 36614891--36616039 Score: 1797
Period size: 559 Copynumber: 2.0 Consensus size: 563
36614881 ATAAGTGGTT
*
36614891 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAAAGAAGCGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAAAGAAGCAG
* *
36614956 ATTGAAACAAACGAAGCAGTCATCTTCCTGATGAGGCACAGAGAAGAAGACCAAATCAAACCTAC
66 ATTGAAACAAACGAAGCAGTCATCTTCATGATGAGACACAGAGAAGAAGACCAAATC-AA-CTAC
* *
36615021 GCTCGATGTGAGCAAATCTTCGAACCCCAACTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
129 GCTCGATGCGAGCAAATCTTCGAACCCCAACTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCA
*
36615086 ATAAAATGGTTAGCTTCCTGATGAGATACTGATAAGTGAACCAAATTCGTCTTCCTGATGAGATA
194 ATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATA
* *
36615151 CAGAGAAGCGGATTGAAACAAGTGAGGTGGTCATCTTCCTGATGAGATACAGAGAAGTATACCAA
259 CAGAGAAGCGGATTAAAACAAGTGAGGTGGTCATCTTCCTGATGAGATACAAAGAAGTATACCAA
* * *
36615216 CTCGAGGCTCAATGTGAGCAAATCTTCGAACCCCAACTTCCTGATGAGATATTGAGAAGCAGGTC
324 CTCGACGCTCAATGCGAGCAAATCTTCCAACCCCAACTTCCTGATGAGATATTGAGAAGCAGGTC
* * * *
36615281 GAAGCAATAAAATGGTTAGCTTCCTGATGAGATACTGGGAAGTGGACCAAATTTATCTTCCTGAT
389 GAAGCAATAAAATGGTTAGCCTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTCAT
*
36615346 GAGATACAGAGAAGCGGATTGAAACAAACGACGCGGTCATCTTCCTGATGAGACACAGAGAAGAA
454 GAGATACAGAGAAGCGAATTGAAACAAACGACGCGGTCATCTTCCTGATGAGACACAGAGAAGAA
* *
36615411 GACCAAATCAAACCCACGCTCGATATGAGCAAATCTTTAAACCCC
519 GACCAAATCAAACCCAAGCTCGATATGAGCAAATCTTCAAACCCC
* * * * *
36615456 AGCTTCTTGATGAGATACTGAGAAGTGTACCAAATTCGTCTTCCTGATGAGATACAGAGATGCAG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAAAGAAGCAG
** * * * * * **
36615521 ATTGAAACAAGTGAGGCGGTCATCTTCATGATGAGATACAGAGAAGTATACC-AA-C-A-TGATT
66 ATTGAAACAAACGAAGCAGTCATCTTCATGATGAGACACAGAGAAGAAGACCAAATCAACT-ACG
*
36615582 CTCGATGCGAGCAAATCTTCGAACCCCAGCTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAA
130 CTCGATGCGAGCAAATCTTCGAACCCCAACTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAA
* *
36615647 TAAAATGGTTAGCTTCCTGATGAGATATTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
195 TAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATAC
36615712 AGAGAAGCGGATTAAAACAAGTGATGG-GGTCATCTTCCTGATGAGATACAAAGAAGTATACCAA
260 AGAGAAGCGGATTAAAACAAGTGA-GGTGGTCATCTTCCTGATGAGATACAAAGAAGTATACCAA
* * * *
36615776 CTTGACGCTCGATGCGAGTAAATCTTCCAA-CCCAGCTTCCTGATGAGATATTGAGAAGCAGGTC
324 CTCGACGCTCAATGCGAGCAAATCTTCCAACCCCAACTTCCTGATGAGATATTGAGAAGCAGGTC
*
36615840 GAAGCAATAAAATGGTTAGCCTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTCAT
389 GAAGCAATAAAATGGTTAGCCTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTCAT
* * * *
36615905 GAGATACAGAGAAGCGAATTGAAACAAACGATGCGGTCATCTTCTTGATGAGATACTGAGAAGAA
454 GAGATACAGAGAAGCGAATTGAAACAAACGACGCGGTCATCTTCCTGATGAGACACAGAGAAGAA
** *
36615970 GACCAAATCAAACTTAAGCTCGATATGAGTAAATCTTCAAACCCC
519 GACCAAATCAAACCCAAGCTCGATATGAGCAAATCTTCAAACCCC
36616015 AGCTTCCTGATGAGATACTGAGAAG
1 AGCTTCCTGATGAGATACTGAGAAG
36616040 CAGGTCGAAG
Statistics
Matches: 534, Mismatches: 48, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
559 218 0.41
560 208 0.39
561 3 0.01
563 1 0.00
564 2 0.00
565 102 0.19
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (563 bp):
AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAAAGAAGCAG
ATTGAAACAAACGAAGCAGTCATCTTCATGATGAGACACAGAGAAGAAGACCAAATCAACTACGC
TCGATGCGAGCAAATCTTCGAACCCCAACTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAAT
AAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACA
GAGAAGCGGATTAAAACAAGTGAGGTGGTCATCTTCCTGATGAGATACAAAGAAGTATACCAACT
CGACGCTCAATGCGAGCAAATCTTCCAACCCCAACTTCCTGATGAGATATTGAGAAGCAGGTCGA
AGCAATAAAATGGTTAGCCTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTCATGA
GATACAGAGAAGCGAATTGAAACAAACGACGCGGTCATCTTCCTGATGAGACACAGAGAAGAAGA
CCAAATCAAACCCAAGCTCGATATGAGCAAATCTTCAAACCCC
Found at i:36616095 original size:206 final size:204
Alignment explanation
Indices: 36615456--36616181 Score: 943
Period size: 206 Copynumber: 3.6 Consensus size: 204
36615446 TTTAAACCCC
* * *
36615456 AGCTTCTTGATGAGATACTGAGAAGTGTACCAAATTCGTCTTCCTGATGAGATACAGAGATGC-A
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
* * * * * * *
36615520 GATTGAAACAAGTGAGGCGGTCATCTTCATGATGAGATACAGAGAAGTATACC-AACATGA-TT-
66 -ATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAACA-AACTTA
* * *
36615582 -CTCGATGCGAGCAAATCTTCGAACCCCAGCTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCA
129 GCTCGATGCGAGTAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
36615646 ATAAAATGGTT
194 ATAAAATGGTT
* *
36615657 AGCTTCCTGATGAGATATTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
* * * *
36615722 ATTAAAACAAGTGATGGGGTCATCTTCCTGATGAGATAC--A-AAGAAG--TATACCAACTTGAC
66 ATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAACAAACTT-A-
* *
36615782 GCTCGATGCGAGTAAATCTTCCAA-CCCAGCTTCCTGATGAGATATTGAGAAGCAGGTCGAAGCA
129 GCTCGATGCGAGTAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
36615846 ATAAAATGGTT
194 ATAAAATGGTT
* *
36615857 AGCCTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTCATGAGATACAGAGAAGCGA
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
* ** *
36615922 ATTGAAACAAACGATGCGGTCATCTTCTTGATGAGATACTGAGAAGAAGACCAAATCAAACTTAA
66 ATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA-CAAACTT-A
**
36615987 GCTCGATATGAGTAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
129 GCTCGATGCGAGTAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
*
36616052 ATAAAGTGGTT
194 ATAAAATGGTT
* * * * * * * * * *
36616063 AGCTTCTTGATGAGATACAGAGAAGCGGACCAAATCCGTCTTCCGGATGAAACACAAAGAAGTGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
* *
36616128 ATCAAAACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAA
66 ATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAA
36616182 GTCAATGAAA
Statistics
Matches: 456, Mismatches: 55, Indels: 23
0.85 0.10 0.04
Matches are distributed among these distances:
196 1 0.00
197 4 0.01
198 4 0.01
199 1 0.00
200 144 0.32
201 115 0.25
202 1 0.00
203 6 0.01
205 23 0.05
206 157 0.34
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (204 bp):
AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
ATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAACAAACTTAGC
TCGATGCGAGTAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAAT
AAAATGGTT
Found at i:36616611 original size:17 final size:17
Alignment explanation
Indices: 36616591--36616628 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
36616581 TTGGGGATTG
*
36616591 AATTTACTTTAAATTTA
1 AATTTACTTTAAATTAA
*
36616608 AATTTATTTTAAATTAA
1 AATTTACTTTAAATTAA
36616625 AATT
1 AATT
36616629 AAAAGTCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
AATTTACTTTAAATTAA
Found at i:36616649 original size:15 final size:16
Alignment explanation
Indices: 36616629--36616664 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
36616619 AATTAAAATT
36616629 AAAAGTCCAAAA-TAC
1 AAAAGTCCAAAATTAC
36616644 AAAAGTCCAAAATTAC
1 AAAAGTCCAAAATTAC
36616660 AAAAG
1 AAAAG
36616665 CACAATTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.61, C:0.17, G:0.08, T:0.14
Consensus pattern (16 bp):
AAAAGTCCAAAATTAC
Found at i:36616748 original size:34 final size:35
Alignment explanation
Indices: 36616705--36616770 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 35
36616695 AGATACACCA
*
36616705 AAGCCCAATTACAAGGGCCC-AATTAACCCAACAC
1 AAGCCCAATTACAAGGGCCCAAAATAACCCAACAC
*
36616739 AAGCCCAATTACACGGGCCCAAAATAACCCAA
1 AAGCCCAATTACAAGGGCCCAAAATAACCCAA
36616771 AACAGAAGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 19 0.66
35 10 0.34
ACGTcount: A:0.42, C:0.35, G:0.12, T:0.11
Consensus pattern (35 bp):
AAGCCCAATTACAAGGGCCCAAAATAACCCAACAC
Found at i:36618149 original size:5 final size:5
Alignment explanation
Indices: 36618139--36618174 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
36618129 TGACCATGGA
* *
36618139 CCGAT CCGAT CCGAC CCGAC CCGAC CCGAC CCGAC C
1 CCGAC CCGAC CCGAC CCGAC CCGAC CCGAC CCGAC C
36618175 TAAGATCCGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.19, C:0.56, G:0.19, T:0.06
Consensus pattern (5 bp):
CCGAC
Found at i:36621723 original size:153 final size:153
Alignment explanation
Indices: 36621554--36621838 Score: 464
Period size: 153 Copynumber: 1.9 Consensus size: 153
36621544 AGTGTTTTGA
* *
36621554 AAACTTTTGAAAAGGATATCCGATTTGCATGAATTACGAAAATCACACTTAACACGTTAAAGTGC
1 AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
* *
36621619 GAT-TTCTCGAAGTTTTCACACGAAAGGACATTGCCTCGTTTTAAAATTACTTGTGATATAGATA
66 GATCTT-TCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATA
36621683 TATAAAAATTGAAGGATGTTTCGG
130 TATAAAAATTGAAGGATGTTTCGG
* **
36621707 AAACTTTTGAAGAGGATATTTGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
1 AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
* * *
36621772 GATCTTTCGAAGTTTTCACACGACAGGACATTGCGTCGCTTTAAAATTATTTGTAATATAGATAT
66 GATCTTTCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATAT
36621837 AT
131 AT
36621839 GTTTTGAGAA
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
153 119 0.98
154 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (153 bp):
AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
GATCTTTCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATAT
ATAAAAATTGAAGGATGTTTCGG
Found at i:36622387 original size:29 final size:29
Alignment explanation
Indices: 36622349--36622447 Score: 76
Period size: 29 Copynumber: 3.3 Consensus size: 29
36622339 GTAAAATATA
36622349 ATTTTGAGAAAATTTAAGGTTAAAAATGGG
1 ATTTT-AGAAAATTTAAGGTTAAAAATGGG
* * * *
36622379 ATTTTAGAAAGTTTAGGGGT-AAAATGGTA
1 ATTTTAGAAAATTTAAGGTTAAAAATGG-G
* * *
36622408 ATTTTTGGTGAAA-TCAAGGTTAAAAATGGG
1 A-TTTTAG-AAAATTTAAGGTTAAAAATGGG
*
36622438 ATTTTGGAAA
1 ATTTTAGAAA
36622448 GTTCGGGGGT
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
28 9 0.17
29 19 0.36
30 16 0.30
31 9 0.17
ACGTcount: A:0.39, C:0.01, G:0.25, T:0.34
Consensus pattern (29 bp):
ATTTTAGAAAATTTAAGGTTAAAAATGGG
Found at i:36622427 original size:59 final size:58
Alignment explanation
Indices: 36622365--36622648 Score: 424
Period size: 59 Copynumber: 4.8 Consensus size: 58
36622355 AGAAAATTTA
* * *
36622365 AGGTTAAAAATGGGATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCA
1 AGGTTAAAAATGGAATTTTGGAAAGTTT-GGGGTAAAATGGTAATTTTTGGTGAAATCG
* *
36622424 AGGTTAAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTT-TGGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
36622483 AGGTTAAAAATAGAATTTTGGAAGGTTTGGGGGTAAAATGATAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTTT-GGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
36622542 GGGTCAAAAATGGAATTTTAGAAAGTTTGGAGGTAAAATGGTAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTTTGG-GGTAAAATGGTAATTTTTGGTGAAATCG
*
36622601 AGGTTAAAAATAGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTT
1 AGGTTAAAAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTT
36622649 AGAAGTTTTG
Statistics
Matches: 204, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
58 20 0.10
59 184 0.90
ACGTcount: A:0.36, C:0.02, G:0.29, T:0.34
Consensus pattern (58 bp):
AGGTTAAAAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTTGGTGAAATCG
Found at i:36622470 original size:29 final size:28
Alignment explanation
Indices: 36622430--36622647 Score: 101
Period size: 30 Copynumber: 7.5 Consensus size: 28
36622420 ATCAAGGTTA
*
36622430 AAAATGGGATTTTGGAAAGTTCGGGGGT
1 AAAATGGAATTTTGGAAAGTTCGGGGGT
* *
36622458 AAAATGGTAATTTTTGGTGAAA--TCGAGGTT
1 AAAATGG-AA-TTTT-G-GAAAGTTCGGGGGT
* * *
36622488 AAAAATAGAATTTTGGAAGGTTTGGGGGT
1 -AAAATGGAATTTTGGAAAGTTCGGGGGT
*
36622517 AAAATGATAATTTTTGGTGAAA--TC-GGGGT
1 AAAATG-GAA-TTTT-G-GAAAGTTCGGGGGT
* * *
36622546 CAAAAATGGAATTTTAGAAAGTTTGGAGGT
1 --AAAATGGAATTTTGGAAAGTTCGGGGGT
* *
36622576 AAAATGGTAATTTTTGGTGAAA--TCGAGGTT
1 AAAATGG-AA-TTTT-G-GAAAGTTCGGGGGT
* *
36622606 AAAAATAGAATTTTGGAAAGTT-TGGGGT
1 -AAAATGGAATTTTGGAAAGTTCGGGGGT
36622634 AAAATGGTAATTTT
1 AAAATGG-AATTTT
36622648 TAGAAGTTTT
Statistics
Matches: 140, Mismatches: 26, Indels: 48
0.65 0.12 0.22
Matches are distributed among these distances:
27 17 0.12
28 30 0.21
29 29 0.21
30 33 0.24
31 20 0.14
32 11 0.08
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.33
Consensus pattern (28 bp):
AAAATGGAATTTTGGAAAGTTCGGGGGT
Found at i:36622618 original size:30 final size:30
Alignment explanation
Indices: 36622399--36622619 Score: 117
Period size: 30 Copynumber: 7.4 Consensus size: 30
36622389 GTTTAGGGGT
*
36622399 AAAATGGTAATTTTTGGTGAAATCAAGGTTA
1 AAAATGG-AATTTTTGGTGAAATCGAGGTTA
* * *
36622430 AAAATGGGA-TTTT-G-GAAAGTTCGGGGGT-
1 AAAATGGAATTTTTGGTGAAA--TCGAGGTTA
36622458 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
1 AAAATGG-AATTTTTGGTGAAATCGAGGTTA
* * * * *
36622489 AAAATAGAA-TTTT-G-GAAGGTTTGGGGGT-
1 AAAATGGAATTTTTGGTGAA--ATCGAGGTTA
* * *
36622517 AAAATGATAATTTTTGGTGAAATCGGGGTCA
1 AAAATG-GAATTTTTGGTGAAATCGAGGTTA
* *
36622548 AAAATGGAA-TTTT--AGAAAGTTTGGAGG-T-
1 AAAATGGAATTTTTGGTGAAA---TCGAGGTTA
36622576 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
1 AAAATGG-AATTTTTGGTGAAATCGAGGTTA
*
36622607 AAAATAGAATTTT
1 AAAATGGAATTTT
36622620 GGAAAGTTTG
Statistics
Matches: 141, Mismatches: 26, Indels: 47
0.66 0.12 0.22
Matches are distributed among these distances:
27 11 0.08
28 21 0.15
29 32 0.23
30 39 0.28
31 27 0.19
32 11 0.08
ACGTcount: A:0.36, C:0.03, G:0.28, T:0.33
Consensus pattern (30 bp):
AAAATGGAATTTTTGGTGAAATCGAGGTTA
Found at i:36622648 original size:29 final size:29
Alignment explanation
Indices: 36622380--36622691 Score: 127
Period size: 29 Copynumber: 10.6 Consensus size: 29
36622370 AAAAATGGGA
*
36622380 TTTTAGAAAGTTTAGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTT-GGGGTAAAATGGTAAT
*** * *
36622410 TTTTGGTGAAA-TCAAGGTTAAAAATGG-GA-
1 TTTT-G-GAAAGTTTGGGGT-AAAATGGTAAT
*
36622439 TTTTGGAAAGTTCGGGGGTAAAATGGTAAT
1 TTTTGGAAAGTT-TGGGGTAAAATGGTAAT
* * *
36622469 TTTTGGTGAAA--TCGAGGTTAAAAATAG-AA-
1 TTTT-G-GAAAGTTTG-GGGT-AAAATGGTAAT
* *
36622498 TTTTGGAAGGTTTGGGGGTAAAATGATAAT
1 TTTTGGAAAGTTT-GGGGTAAAATGGTAAT
*
36622528 TTTTGGTGAAA--TCGGGGTCAAAAATGG-AA-
1 TTTT-G-GAAAGTTTGGGGT--AAAATGGTAAT
*
36622557 TTTTAGAAAGTTTGGAGGTAAAATGGTAAT
1 TTTTGGAAAGTTTGG-GGTAAAATGGTAAT
* * *
36622587 TTTTGGTGAAA--TCGAGGTTAAAAATAG-AA-
1 TTTT-G-GAAAGTTTG-GGGT-AAAATGGTAAT
36622616 TTTTGGAAAGTTTGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTTGGGGTAAAATGGTAAT
* *
36622645 TTTTAG-AAGTTTTGAGGTTAAAAT-GTAAT
1 TTTTGGAAAG-TTTG-GGGTAAAATGGTAAT
* *
36622674 TTTTTGAAATTTTGGGGT
1 TTTTGGAAAGTTTGGGGT
36622692 CATAAATATA
Statistics
Matches: 210, Mismatches: 36, Indels: 74
0.66 0.11 0.23
Matches are distributed among these distances:
27 21 0.10
28 34 0.16
29 62 0.30
30 49 0.23
31 29 0.14
32 15 0.07
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (29 bp):
TTTTGGAAAGTTTGGGGTAAAATGGTAAT
Found at i:36622704 original size:30 final size:28
Alignment explanation
Indices: 36622607--36622705 Score: 83
Period size: 29 Copynumber: 3.4 Consensus size: 28
36622597 ATCGAGGTTA
* * *
36622607 AAAATAGAA-TTTTGGAAAGTTTGGGGT
1 AAAATATAATTTTTAGAAATTTTGGGGT
* * *
36622634 AAAATGGTAATTTTTAGAAGTTTTGAGGTT
1 AAAAT-ATAATTTTTAGAAATTTTG-GGGT
* *
36622664 AAAATGTAATTTTTTGAAATTTTGGGGT
1 AAAATATAATTTTTAGAAATTTTGGGGT
36622692 CATAAATATAATTT
1 -A-AAATATAATTT
36622706 ATGAATAGTT
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
27 5 0.09
28 5 0.09
29 29 0.51
30 18 0.32
ACGTcount: A:0.36, C:0.01, G:0.21, T:0.41
Consensus pattern (28 bp):
AAAATATAATTTTTAGAAATTTTGGGGT
Found at i:36624147 original size:206 final size:200
Alignment explanation
Indices: 36623510--36624235 Score: 961
Period size: 200 Copynumber: 3.6 Consensus size: 200
36623500 TTCGAACCCC
** * *
36623510 AGCTTCCTGATGAGATGTTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGATGCAG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* ** * * *
36623575 ATTGAAACAAGTGAGGCTATCATCTTTCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAACATGACGCTCG
* *
36623640 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATAAGATACTGAGAAGTAGGTCGAAGCAATAAA
131 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAAT-AA
36623705 ATGGTT
195 ATGGTT
* * *
36623711 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATAAGATACAGAGAAGCAG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* * * * *
36623776 ATAAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTATACCAACTTGACGCTCG
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAACATGACGCTCG
** * *
36623841 ATGCGGGCAAATCTTCGAA-CCCAGCTTCCTGATGAGATACTGAGAAGCTGGTCGAAGCAATAGA
131 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATA-A
36623905 ATGGTT
195 ATGGTT
*
36623911 AGCCTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGC-G
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* ** * * *
36623975 AATTGAAACAAACGATGCGGTCATCTTCTTGATGAGATACTGAGAAGAAGACCAAATCAAACTCA
66 -ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACC-AA-C--A-TGA
* *
36624040 AGCTCGATATGAGCAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
125 CGCTCGATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
36624105 AATAAAGTGGTT
190 AATAAA-TGGTT
* * * * * * **
36624117 AGCTTCTTGATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCGGATGAAACACAAAGAAGTGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* * *
36624182 ATCAAAACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAA
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAA
36624236 GTCAATGAAA
Statistics
Matches: 462, Mismatches: 53, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
199 2 0.00
200 148 0.32
201 136 0.29
202 1 0.00
205 26 0.06
206 148 0.32
207 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (200 bp):
AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAACATGACGCTCG
ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAA
TGGTT
Found at i:36624687 original size:15 final size:16
Alignment explanation
Indices: 36624667--36624702 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
36624657 AATTTAAATT
36624667 AAAAGTCCAAAA-TAC
1 AAAAGTCCAAAATTAC
36624682 AAAAGTCCAAAATTAC
1 AAAAGTCCAAAATTAC
36624698 AAAAG
1 AAAAG
36624703 CACAATTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.61, C:0.17, G:0.08, T:0.14
Consensus pattern (16 bp):
AAAAGTCCAAAATTAC
Found at i:36624786 original size:34 final size:35
Alignment explanation
Indices: 36624743--36624808 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 35
36624733 AGATACACCA
*
36624743 AAGCCCAATTACAAGGGCCC-AATTAACCCAACAC
1 AAGCCCAATTACAAGGGCCCAAAATAACCCAACAC
* *
36624777 AAGCCCAATTAGACGGGCCCAAAATAACCCAA
1 AAGCCCAATTACAAGGGCCCAAAATAACCCAA
36624809 AACAGAAGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 18 0.64
35 10 0.36
ACGTcount: A:0.42, C:0.33, G:0.14, T:0.11
Consensus pattern (35 bp):
AAGCCCAATTACAAGGGCCCAAAATAACCCAACAC
Found at i:36626838 original size:146 final size:146
Alignment explanation
Indices: 36626566--36626866 Score: 414
Period size: 146 Copynumber: 2.1 Consensus size: 146
36626556 TAAATTGTCT
* * *
36626566 AAAAATTACATTTTTACCCCCAAAAATTTGAAAAATTCCATTTTTGACTCTAAAACTTCCAAAAA
1 AAAAATTACATTTTTACACCCAAAAATTTCAAAAATTCCATTTTTGACCCTAAAACTTCCAAAAA
* * * * *
36626631 TTACATTTTAACTCGAAAATTTCCAAAAATTCCATTTTAACCCTAAGATTTTCAAATATTCCATT
66 ATACATTTTAACTCGAAAATCTCCAAAAATTCCATTTTAACCCGAAGACTTCCAAATATTCCATT
36626696 TTGACCTCGAAACTTCC
131 TTGACCTCGAAACTT-C
* * * *
36626713 AAAAATTACA-TTTTA-ACCCTAAAATTTCCAAAAATTCTATTTTTGACCCTGAAACTTTCAAAA
1 AAAAATTACATTTTTACACCCAAAAATTT-CAAAAATTCCATTTTTGACCCTAAAACTTCCAAAA
36626776 AATACATTTTAACCTCG-AAATCTCCAAAAATTCCATTTTAACCTCGAA-ACTTCCAACA-ATTC
65 AATACATTTTAA-CTCGAAAATCTCCAAAAATTCCATTTTAACC-CGAAGACTTCCAA-ATATTC
36626838 CATTTTGACCTCGAAACTTC
127 CATTTTGACCTCGAAACTTC
36626858 AAAAATTAC
1 AAAAATTAC
36626867 CCTTTTACCC
Statistics
Matches: 138, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
145 20 0.14
146 100 0.72
147 18 0.13
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.34
Consensus pattern (146 bp):
AAAAATTACATTTTTACACCCAAAAATTTCAAAAATTCCATTTTTGACCCTAAAACTTCCAAAAA
ATACATTTTAACTCGAAAATCTCCAAAAATTCCATTTTAACCCGAAGACTTCCAAATATTCCATT
TTGACCTCGAAACTTC
Found at i:36626848 original size:29 final size:29
Alignment explanation
Indices: 36626596--36626873 Score: 246
Period size: 29 Copynumber: 9.5 Consensus size: 29
36626586 CAAAAATTTG
* *
36626596 AAAAATTCCATTTTTGA-CTCTAAAACTTCC
1 AAAAATTCCA-TTTTAACCTC-GAAACTTCC
* *
36626626 AAAAATTACATTTTAA-CTCGAAAATTTCC
1 AAAAATTCCATTTTAACCTCG-AAACTTCC
* * *
36626655 AAAAATTCCATTTTAACC-CTAAGATTTTC
1 AAAAATTCCATTTTAACCTCGAA-ACTTCC
* *
36626684 AAATATTCCATTTTGACCTCGAAACTTCC
1 AAAAATTCCATTTTAACCTCGAAACTTCC
* * *
36626713 AAAAATTACATTTTAACC-CTAAAATTTCC
1 AAAAATTCCATTTTAACCTC-GAAACTTCC
* * *
36626742 AAAAATTCTATTTTTGACC-CTGAAACTTTC
1 AAAAATTCCA-TTTTAACCTC-GAAACTTCC
* *
36626772 AAAAAATACATTTTAACCTCGAAA-TCTCC
1 AAAAATTCCATTTTAACCTCGAAACT-TCC
36626801 AAAAATTCCATTTTAACCTCGAAACTTCC
1 AAAAATTCCATTTTAACCTCGAAACTTCC
* *
36626830 AACAATTCCATTTTGACCTCGAAACTT-C
1 AAAAATTCCATTTTAACCTCGAAACTTCC
*
36626858 AAAAATTACCCTTTTA
1 AAAAATT-CCATTTTA
36626874 CCCCCGGATG
Statistics
Matches: 203, Mismatches: 35, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
28 11 0.05
29 155 0.76
30 37 0.18
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.35
Consensus pattern (29 bp):
AAAAATTCCATTTTAACCTCGAAACTTCC
Found at i:36634013 original size:153 final size:153
Alignment explanation
Indices: 36633850--36634134 Score: 464
Period size: 153 Copynumber: 1.9 Consensus size: 153
36633840 AGTGTTTTGA
* *
36633850 AAACTTTTGAAAAGGATATCCGATTTGCATGAATTACGAAAATCACACTTAACACGTTAAAGTGC
1 AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
* *
36633915 GAT-TTCTCGAAGTTTTCACACGAAAGGACATTGCCTCGTTTTAAAATTACTTGTGATATAGATA
66 GATCTT-TCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATA
36633979 TATAAAAATTGAAGGATGTTTCGG
130 TATAAAAATTGAAGGATGTTTCGG
* **
36634003 AAACTTTTGAAGAGGATATTTGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
1 AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
* * *
36634068 GATCTTTCGAAGTTTTCACACGACAGGACATTGCGTCGCTTTAAAATTATTTGTAATATAGATAT
66 GATCTTTCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATAT
36634133 AT
131 AT
36634135 GTTTTGAGAA
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
153 119 0.98
154 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (153 bp):
AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
GATCTTTCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATAT
ATAAAAATTGAAGGATGTTTCGG
Found at i:36634684 original size:29 final size:29
Alignment explanation
Indices: 36634645--36634743 Score: 85
Period size: 29 Copynumber: 3.3 Consensus size: 29
36634635 GTAAAATATA
36634645 ATTTTGGGAAAATTTAAGGTTAAAAATGGG
1 ATTTT-GGAAAATTTAAGGTTAAAAATGGG
* * * * *
36634675 ATTTTAGAAAGTTTAGGGGT-AAAATGGTA
1 ATTTTGGAAAATTTAAGGTTAAAAATGG-G
* *
36634704 ATTTTTGGTGAAA-TCAAGGTTAAAAATGGG
1 A-TTTTGG-AAAATTTAAGGTTAAAAATGGG
36634734 ATTTTGGAAA
1 ATTTTGGAAA
36634744 GTTCGGGGGT
Statistics
Matches: 52, Mismatches: 13, Indels: 10
0.69 0.17 0.13
Matches are distributed among these distances:
28 9 0.17
29 18 0.35
30 16 0.31
31 9 0.17
ACGTcount: A:0.38, C:0.01, G:0.26, T:0.34
Consensus pattern (29 bp):
ATTTTGGAAAATTTAAGGTTAAAAATGGG
Found at i:36634723 original size:59 final size:58
Alignment explanation
Indices: 36634661--36634944 Score: 424
Period size: 59 Copynumber: 4.8 Consensus size: 58
36634651 GGAAAATTTA
* * *
36634661 AGGTTAAAAATGGGATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCA
1 AGGTTAAAAATGGAATTTTGGAAAGTTT-GGGGTAAAATGGTAATTTTTGGTGAAATCG
* *
36634720 AGGTTAAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTT-TGGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
36634779 AGGTTAAAAATAGAATTTTGGAAGGTTTGGGGGTAAAATGATAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTTT-GGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
36634838 GGGTCAAAAATGGAATTTTAGAAAGTTTGGAGGTAAAATGGTAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTTTGG-GGTAAAATGGTAATTTTTGGTGAAATCG
*
36634897 AGGTTAAAAATAGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTT
1 AGGTTAAAAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTT
36634945 AGAAGTTTTG
Statistics
Matches: 204, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
58 20 0.10
59 184 0.90
ACGTcount: A:0.36, C:0.02, G:0.29, T:0.34
Consensus pattern (58 bp):
AGGTTAAAAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTTGGTGAAATCG
Found at i:36634766 original size:29 final size:28
Alignment explanation
Indices: 36634726--36634943 Score: 101
Period size: 30 Copynumber: 7.5 Consensus size: 28
36634716 ATCAAGGTTA
*
36634726 AAAATGGGATTTTGGAAAGTTCGGGGGT
1 AAAATGGAATTTTGGAAAGTTCGGGGGT
* *
36634754 AAAATGGTAATTTTTGGTGAAA--TCGAGGTT
1 AAAATGG-AA-TTTT-G-GAAAGTTCGGGGGT
* * *
36634784 AAAAATAGAATTTTGGAAGGTTTGGGGGT
1 -AAAATGGAATTTTGGAAAGTTCGGGGGT
*
36634813 AAAATGATAATTTTTGGTGAAA--TC-GGGGT
1 AAAATG-GAA-TTTT-G-GAAAGTTCGGGGGT
* * *
36634842 CAAAAATGGAATTTTAGAAAGTTTGGAGGT
1 --AAAATGGAATTTTGGAAAGTTCGGGGGT
* *
36634872 AAAATGGTAATTTTTGGTGAAA--TCGAGGTT
1 AAAATGG-AA-TTTT-G-GAAAGTTCGGGGGT
* *
36634902 AAAAATAGAATTTTGGAAAGTT-TGGGGT
1 -AAAATGGAATTTTGGAAAGTTCGGGGGT
36634930 AAAATGGTAATTTT
1 AAAATGG-AATTTT
36634944 TAGAAGTTTT
Statistics
Matches: 140, Mismatches: 26, Indels: 48
0.65 0.12 0.22
Matches are distributed among these distances:
27 17 0.12
28 30 0.21
29 29 0.21
30 33 0.24
31 20 0.14
32 11 0.08
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.33
Consensus pattern (28 bp):
AAAATGGAATTTTGGAAAGTTCGGGGGT
Found at i:36634914 original size:30 final size:30
Alignment explanation
Indices: 36634695--36634915 Score: 117
Period size: 30 Copynumber: 7.4 Consensus size: 30
36634685 GTTTAGGGGT
*
36634695 AAAATGGTAATTTTTGGTGAAATCAAGGTTA
1 AAAATGG-AATTTTTGGTGAAATCGAGGTTA
* * *
36634726 AAAATGGGA-TTTT-G-GAAAGTTCGGGGGT-
1 AAAATGGAATTTTTGGTGAAA--TCGAGGTTA
36634754 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
1 AAAATGG-AATTTTTGGTGAAATCGAGGTTA
* * * * *
36634785 AAAATAGAA-TTTT-G-GAAGGTTTGGGGGT-
1 AAAATGGAATTTTTGGTGAA--ATCGAGGTTA
* * *
36634813 AAAATGATAATTTTTGGTGAAATCGGGGTCA
1 AAAATG-GAATTTTTGGTGAAATCGAGGTTA
* *
36634844 AAAATGGAA-TTTT--AGAAAGTTTGGAGG-T-
1 AAAATGGAATTTTTGGTGAAA---TCGAGGTTA
36634872 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
1 AAAATGG-AATTTTTGGTGAAATCGAGGTTA
*
36634903 AAAATAGAATTTT
1 AAAATGGAATTTT
36634916 GGAAAGTTTG
Statistics
Matches: 141, Mismatches: 26, Indels: 47
0.66 0.12 0.22
Matches are distributed among these distances:
27 11 0.08
28 21 0.15
29 32 0.23
30 39 0.28
31 27 0.19
32 11 0.08
ACGTcount: A:0.36, C:0.03, G:0.28, T:0.33
Consensus pattern (30 bp):
AAAATGGAATTTTTGGTGAAATCGAGGTTA
Found at i:36634944 original size:29 final size:29
Alignment explanation
Indices: 36634676--36634987 Score: 127
Period size: 29 Copynumber: 10.6 Consensus size: 29
36634666 AAAAATGGGA
*
36634676 TTTTAGAAAGTTTAGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTT-GGGGTAAAATGGTAAT
*** * *
36634706 TTTTGGTGAAA-TCAAGGTTAAAAATGG-GA-
1 TTTT-G-GAAAGTTTGGGGT-AAAATGGTAAT
*
36634735 TTTTGGAAAGTTCGGGGGTAAAATGGTAAT
1 TTTTGGAAAGTT-TGGGGTAAAATGGTAAT
* * *
36634765 TTTTGGTGAAA--TCGAGGTTAAAAATAG-AA-
1 TTTT-G-GAAAGTTTG-GGGT-AAAATGGTAAT
* *
36634794 TTTTGGAAGGTTTGGGGGTAAAATGATAAT
1 TTTTGGAAAGTTT-GGGGTAAAATGGTAAT
*
36634824 TTTTGGTGAAA--TCGGGGTCAAAAATGG-AA-
1 TTTT-G-GAAAGTTTGGGGT--AAAATGGTAAT
*
36634853 TTTTAGAAAGTTTGGAGGTAAAATGGTAAT
1 TTTTGGAAAGTTTGG-GGTAAAATGGTAAT
* * *
36634883 TTTTGGTGAAA--TCGAGGTTAAAAATAG-AA-
1 TTTT-G-GAAAGTTTG-GGGT-AAAATGGTAAT
36634912 TTTTGGAAAGTTTGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTTGGGGTAAAATGGTAAT
* *
36634941 TTTTAG-AAGTTTTGAGGTTAAAAT-GTAAT
1 TTTTGGAAAG-TTTG-GGGTAAAATGGTAAT
* *
36634970 TTTTTGAAATTTTGGGGT
1 TTTTGGAAAGTTTGGGGT
36634988 CATAAATATA
Statistics
Matches: 210, Mismatches: 36, Indels: 74
0.66 0.11 0.23
Matches are distributed among these distances:
27 21 0.10
28 34 0.16
29 62 0.30
30 49 0.23
31 29 0.14
32 15 0.07
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (29 bp):
TTTTGGAAAGTTTGGGGTAAAATGGTAAT
Found at i:36635000 original size:30 final size:28
Alignment explanation
Indices: 36634903--36635001 Score: 83
Period size: 29 Copynumber: 3.4 Consensus size: 28
36634893 ATCGAGGTTA
* * *
36634903 AAAATAGAA-TTTTGGAAAGTTTGGGGT
1 AAAATATAATTTTTAGAAATTTTGGGGT
* * *
36634930 AAAATGGTAATTTTTAGAAGTTTTGAGGTT
1 AAAAT-ATAATTTTTAGAAATTTTG-GGGT
* *
36634960 AAAATGTAATTTTTTGAAATTTTGGGGT
1 AAAATATAATTTTTAGAAATTTTGGGGT
36634988 CATAAATATAATTT
1 -A-AAATATAATTT
36635002 ATGAATAGTT
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
27 5 0.09
28 5 0.09
29 29 0.51
30 18 0.32
ACGTcount: A:0.36, C:0.01, G:0.21, T:0.41
Consensus pattern (28 bp):
AAAATATAATTTTTAGAAATTTTGGGGT
Found at i:36636042 original size:201 final size:201
Alignment explanation
Indices: 36635806--36636523 Score: 974
Period size: 200 Copynumber: 3.6 Consensus size: 201
36635796 TTCGAACCCC
** * *
36635806 AGCTTCCTGATGAGATGTTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGATGCAG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* ** *
36635871 ATTGAAACAAGTGAGGCTATCATCTTTCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
*
36635936 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATAAGATACTGAGAAGTAGGTCGAAGCAATAAA
131 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGCAATAAA
36636001 ATGGTT
196 ATGGTT
* *
36636007 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCAG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* * *
36636072 ATAAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTATACCAACTTGACGCTCG
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
** * *
36636137 ATGCGGGCAAATCTTCGAA-CCCAGCTTCCTGATGAGATACTGAGAAGCT-GGTCGAAGCAATAG
131 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAG-TAGGTCGAAGCAATAA
36636200 AATGGTT
195 AATGGTT
*
36636207 AGCCTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGC-G
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* ** * * * * *
36636271 AATTGAAACAAACGATGCGGTCATCTTCTTGATGAGATACTGAGAAGAAGACCAAATCAAACTCA
66 -ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACC-AA-C--A-TGA
* * *
36636336 AGCTCGATATGAGCAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
125 CGCTCGATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGC
*
36636401 AATAAAGTGGTT
190 AATAAAATGGTT
* * * * * * **
36636413 AGCTTCTTGATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCGGATGAAACACAAAGAAGTGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* * *
36636478 ATCAAAACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAG
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAG
36636524 AAGACCAAGT
Statistics
Matches: 455, Mismatches: 52, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
199 1 0.00
200 150 0.33
201 138 0.30
202 1 0.00
205 22 0.05
206 142 0.31
207 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (201 bp):
AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGCAATAAA
ATGGTT
Found at i:36636982 original size:15 final size:16
Alignment explanation
Indices: 36636962--36636997 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
36636952 AATTTAAATT
36636962 AAAAGTCCAAAA-TAC
1 AAAAGTCCAAAATTAC
36636977 AAAAGTCCAAAATTAC
1 AAAAGTCCAAAATTAC
36636993 AAAAG
1 AAAAG
36636998 CACAATTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.61, C:0.17, G:0.08, T:0.14
Consensus pattern (16 bp):
AAAAGTCCAAAATTAC
Found at i:36638937 original size:29 final size:28
Alignment explanation
Indices: 36638889--36639166 Score: 222
Period size: 29 Copynumber: 9.5 Consensus size: 28
36638879 CAAAAATTTG
*
36638889 AAAAATTCCATTTTTGACTCTGAAACTTCC
1 AAAAATTCCA-TTTTAAC-CTGAAACTTCC
* *
36638919 AAAAATTACATTTTAA-CTCGAAAATTTCC
1 AAAAATTCCATTTTAACCT-G-AAACTTCC
* *
36638948 AAAAATTCCATTTTAACCCT-AAGATTTTC
1 AAAAATTCCATTTTAA-CCTGAA-ACTTCC
* *
36638977 AAATATTCCATTTTGACCTCGAAACTTCC
1 AAAAATTCCATTTTAACCT-GAAACTTCC
* * *
36639006 AAAAATTACATTTTAACCCTAAAATTTCC
1 AAAAATTCCATTTTAA-CCTGAAACTTCC
* * * *
36639035 AAAAATTCTATTTTTGACCCTAAAACTTTC
1 AAAAATTCCA-TTTT-AACCTGAAACTTCC
* *
36639065 AAAAAATACATTTTAACCTCGAAA-TCTCC
1 AAAAATTCCATTTTAACCT-GAAACT-TCC
36639094 AAAAATTCCATTTTAACCTCGAAACTTCC
1 AAAAATTCCATTTTAACCT-GAAACTTCC
* *
36639123 AACAATTCCATTTTGACCTCGAAACTT-C
1 AAAAATTCCATTTTAACCT-GAAACTTCC
*
36639151 AAAAATTACCCTTTTA
1 AAAAATT-CCATTTTA
36639167 CCCCGGATGT
Statistics
Matches: 202, Mismatches: 32, Indels: 29
0.77 0.12 0.11
Matches are distributed among these distances:
27 2 0.01
28 18 0.09
29 143 0.71
30 36 0.18
31 3 0.01
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.35
Consensus pattern (28 bp):
AAAAATTCCATTTTAACCTGAAACTTCC
Found at i:36639123 original size:88 final size:87
Alignment explanation
Indices: 36638910--36639140 Score: 297
Period size: 88 Copynumber: 2.6 Consensus size: 87
36638900 TTTTGACTCT
* * *
36638910 GAAACTTCCAAAAATTACATTTTAA-CTCGAAAATTTCCAAAAATTCCATTTTAACCCTAAGATT
1 GAAACTTCCAAAAATTACATTTTAACCTCG-AAATTTCCAAAAATTCCATTTTGACCCTAAAACT
* * * *
36638974 TTCAAATATTCCATTTTGACCTC
65 TTCAAAAAATACATTTTAACCTC
* *
36638997 GAAACTTCCAAAAATTACATTTTAACC-CTAAAATTTCCAAAAATTCTATTTTTGACCCTAAAAC
1 GAAACTTCCAAAAATTACATTTTAACCTC-GAAATTTCCAAAAATTCCA-TTTTGACCCTAAAAC
36639061 TTTCAAAAAATACATTTTAACCTC
64 TTTCAAAAAATACATTTTAACCTC
* * *
36639085 GAAA-TCTCCAAAAATTCCATTTTAACCTCGAAACTTCCAACAATTCCATTTTGACC
1 GAAACT-TCCAAAAATTACATTTTAACCTCGAAATTTCCAAAAATTCCATTTTGACC
36639141 TCGAAACTTC
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
87 52 0.42
88 72 0.58
89 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.34
Consensus pattern (87 bp):
GAAACTTCCAAAAATTACATTTTAACCTCGAAATTTCCAAAAATTCCATTTTGACCCTAAAACTT
TCAAAAAATACATTTTAACCTC
Found at i:36639131 original size:146 final size:146
Alignment explanation
Indices: 36638859--36639159 Score: 414
Period size: 146 Copynumber: 2.1 Consensus size: 146
36638849 TAAATTGTCT
* * * *
36638859 AAAAATTACATTTTTACCCCCAAAAATTTGAAAAATTCCATTTTTGACTCTGAAACTTCCAAAAA
1 AAAAATTACATTTTTACACCCAAAAATTTCAAAAATTCCATTTTTGACCCTAAAACTTCCAAAAA
* * * * *
36638924 TTACATTTTAACTCGAAAATTTCCAAAAATTCCATTTTAACCCTAAGATTTTCAAATATTCCATT
66 ATACATTTTAACTCGAAAATCTCCAAAAATTCCATTTTAACCCGAAGACTTCCAAATATTCCATT
36638989 TTGACCTCGAAACTTCC
131 TTGACCTCGAAACTT-C
* * *
36639006 AAAAATTACA-TTTTA-ACCCTAAAATTTCCAAAAATTCTATTTTTGACCCTAAAACTTTCAAAA
1 AAAAATTACATTTTTACACCCAAAAATTT-CAAAAATTCCATTTTTGACCCTAAAACTTCCAAAA
36639069 AATACATTTTAACCTCG-AAATCTCCAAAAATTCCATTTTAACCTCGAA-ACTTCCAACA-ATTC
65 AATACATTTTAA-CTCGAAAATCTCCAAAAATTCCATTTTAACC-CGAAGACTTCCAA-ATATTC
36639131 CATTTTGACCTCGAAACTTC
127 CATTTTGACCTCGAAACTTC
36639151 AAAAATTAC
1 AAAAATTAC
36639160 CCTTTTACCC
Statistics
Matches: 138, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
145 20 0.14
146 100 0.72
147 18 0.13
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.34
Consensus pattern (146 bp):
AAAAATTACATTTTTACACCCAAAAATTTCAAAAATTCCATTTTTGACCCTAAAACTTCCAAAAA
ATACATTTTAACTCGAAAATCTCCAAAAATTCCATTTTAACCCGAAGACTTCCAAATATTCCATT
TTGACCTCGAAACTTC
Found at i:36639222 original size:29 final size:28
Alignment explanation
Indices: 36638915--36639222 Score: 130
Period size: 29 Copynumber: 10.7 Consensus size: 28
36638905 ACTCTGAAAC
*
36638915 TTCCAAAAATTA-CATTTTAACTCGAAAAT
1 TTCCAAAAA-TACCATTTTAACTC-CAAAT
*
36638944 TTCCAAAAATTCCATTTTAAC-CCTAAGAT
1 TTCCAAAAATACCATTTTAACTCC-AA-AT
* * * * * *
36638973 TTTCAAATATTCCATTTTGACCTCGAAAC
1 TTCCAAAAATACCATTTT-AACTCCAAAT
36639002 TTCCAAAAATTA-CATTTTAAC-CCTAAAAT
1 TTCCAAAAA-TACCATTTTAACTCC--AAAT
* * *
36639031 TTCCAAAAATTCTATTTTTGAC-CCTAAAACT
1 TTCCAAAAATACCA-TTTTAACTCC--AAA-T
* *
36639062 TTCAAAAAATA-CATTTTAACCTCGAAAT
1 TTCCAAAAATACCATTTTAA-CTCCAAAT
* * * *
36639090 CTCCAAAAATTCCATTTTAACCTCGAAAC
1 TTCCAAAAATACCATTTTAA-CTCCAAAT
* * * * *
36639119 TTCCAACAATTCCATTTTGACCTCGAAAC
1 TTCCAAAAATACCATTTT-AACTCCAAAT
* * **
36639148 TT-CAAAAATTACCCTTTT-ACCCCGGAT
1 TTCCAAAAA-TACCATTTTAACTCCAAAT
* * *
36639175 GT-CTAAAATATCATTTTTAACTCCAAATT
1 TTCCAAAAATACCA-TTTTAACTCCAAA-T
36639204 TTCCAAAAATACCATTTTA
1 TTCCAAAAATACCATTTTA
36639223 CCCCCGGTCA
Statistics
Matches: 212, Mismatches: 47, Indels: 40
0.71 0.16 0.13
Matches are distributed among these distances:
26 3 0.01
27 14 0.07
28 26 0.12
29 127 0.60
30 30 0.14
31 12 0.06
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.35
Consensus pattern (28 bp):
TTCCAAAAATACCATTTTAACTCCAAAT
Found at i:36639228 original size:57 final size:57
Alignment explanation
Indices: 36639150--36639260 Score: 136
Period size: 57 Copynumber: 1.9 Consensus size: 57
36639140 CTCGAAACTT
* * *
36639150 CAAAAATTACCCTTTTACCCCGGAT-GTCTAAAATATCATTTTTAACTCCAAATTTTC
1 CAAAAATTACCATTTTACCCCGG-TCATCCAAAATATCATTTTTAACTCCAAATTTTC
* * *
36639207 CAAAAA-TACCATTTTACCCCCGGTCATCCAAAGTCTCATTTTTAGCTCCAAATT
1 CAAAAATTACCATTTTA-CCCCGGTCATCCAAAATATCATTTTTAACTCCAAATT
36639261 GCATCTTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
56 10 0.22
57 36 0.78
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (57 bp):
CAAAAATTACCATTTTACCCCGGTCATCCAAAATATCATTTTTAACTCCAAATTTTC
Found at i:36647064 original size:153 final size:153
Alignment explanation
Indices: 36646895--36647179 Score: 464
Period size: 153 Copynumber: 1.9 Consensus size: 153
36646885 AGTGTTTTGA
* *
36646895 AAACTTTTGAAAAGGATATCCGATTTGCATGAATTACGAAAATCACACTTAACACGTTAAAGTGC
1 AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
* *
36646960 GAT-TTCTCGAAGTTTTCACACGAAAGGACATTGCCTCGTTTTAAAATTACTTGTGATATAGATA
66 GATCTT-TCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATA
36647024 TATAAAAATTGAAGGATGTTTCGG
130 TATAAAAATTGAAGGATGTTTCGG
* **
36647048 AAACTTTTGAAGAGGATATTTGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
1 AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
* * *
36647113 GATCTTTCGAAGTTTTCACACGACAGGACATTGCGTCGCTTTAAAATTATTTGTAATATAGATAT
66 GATCTTTCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATAT
36647178 AT
131 AT
36647180 GTTTTGAGAA
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
153 119 0.98
154 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (153 bp):
AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
GATCTTTCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATAT
ATAAAAATTGAAGGATGTTTCGG
Found at i:36647722 original size:29 final size:29
Alignment explanation
Indices: 36647690--36647784 Score: 79
Period size: 29 Copynumber: 3.2 Consensus size: 29
36647680 GTAAAATATA
36647690 ATTTTGGGAAAATTAAGGTTAAAAATGGG
1 ATTTTGGGAAAATTAAGGTTAAAAATGGG
* * * * *
36647719 ATTTT-AGAAAGTTTAGGGGT-AAAATGGTA
1 ATTTTGGGAAA-ATTAAGGTTAAAAATGG-G
*
36647748 ATTTTTGGTG-AAATCAAGGTTAAAAATGGG
1 A-TTTTGG-GAAAATTAAGGTTAAAAATGGG
36647778 ATTTTGG
1 ATTTTGG
36647785 AAAGTTCGGG
Statistics
Matches: 49, Mismatches: 11, Indels: 12
0.68 0.15 0.17
Matches are distributed among these distances:
28 11 0.22
29 18 0.37
30 10 0.20
31 9 0.18
32 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.27, T:0.35
Consensus pattern (29 bp):
ATTTTGGGAAAATTAAGGTTAAAAATGGG
Found at i:36647767 original size:59 final size:58
Alignment explanation
Indices: 36647705--36647988 Score: 424
Period size: 59 Copynumber: 4.8 Consensus size: 58
36647695 GGGAAAATTA
* * *
36647705 AGGTTAAAAATGGGATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCA
1 AGGTTAAAAATGGAATTTTGGAAAGTTT-GGGGTAAAATGGTAATTTTTGGTGAAATCG
* *
36647764 AGGTTAAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTT-TGGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
36647823 AGGTTAAAAATAGAATTTTGGAAGGTTTGGGGGTAAAATGATAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTTT-GGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
36647882 GGGTCAAAAATGGAATTTTAGAAAGTTTGGAGGTAAAATGGTAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTTTGG-GGTAAAATGGTAATTTTTGGTGAAATCG
*
36647941 AGGTTAAAAATAGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTT
1 AGGTTAAAAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTT
36647989 AGAAGTTTTG
Statistics
Matches: 204, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
58 20 0.10
59 184 0.90
ACGTcount: A:0.36, C:0.02, G:0.29, T:0.34
Consensus pattern (58 bp):
AGGTTAAAAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTTGGTGAAATCG
Found at i:36647782 original size:30 final size:31
Alignment explanation
Indices: 36647739--36647959 Score: 125
Period size: 30 Copynumber: 7.5 Consensus size: 31
36647729 GTTTAGGGGT
*
36647739 AAAATGGTAATTTTTGGTGAAATCAAGGTTA
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
* * *
36647770 AAAATGG-GA-TTTT-G-GAAAGTTCGGGGGT-
1 AAAATGGTAATTTTTGGTGAAA--TCGAGGTTA
36647798 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
* * * * *
36647829 AAAATAG-AA-TTTT-G-GAAGGTTTGGGGGT-
1 AAAATGGTAATTTTTGGTGAA--ATCGAGGTTA
* * *
36647857 AAAATGATAATTTTTGGTGAAATCGGGGTCA
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
* *
36647888 AAAATGG-AA-TTTT--AGAAAGTTTGGAGG-T-
1 AAAATGGTAATTTTTGGTGAAA---TCGAGGTTA
36647916 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
*
36647947 AAAATAG-AATTTT
1 AAAATGGTAATTTT
36647960 GGAAAGTTTG
Statistics
Matches: 141, Mismatches: 26, Indels: 47
0.66 0.12 0.22
Matches are distributed among these distances:
27 11 0.08
28 21 0.15
29 32 0.23
30 39 0.28
31 27 0.19
32 11 0.08
ACGTcount: A:0.36, C:0.03, G:0.28, T:0.33
Consensus pattern (31 bp):
AAAATGGTAATTTTTGGTGAAATCGAGGTTA
Found at i:36647810 original size:29 final size:28
Alignment explanation
Indices: 36647770--36647987 Score: 101
Period size: 30 Copynumber: 7.5 Consensus size: 28
36647760 ATCAAGGTTA
*
36647770 AAAATGGGATTTTGGAAAGTTCGGGGGT
1 AAAATGGAATTTTGGAAAGTTCGGGGGT
* *
36647798 AAAATGGTAATTTTTGGTGAAA--TCGAGGTT
1 AAAATGG-AA-TTTT-G-GAAAGTTCGGGGGT
* * *
36647828 AAAAATAGAATTTTGGAAGGTTTGGGGGT
1 -AAAATGGAATTTTGGAAAGTTCGGGGGT
*
36647857 AAAATGATAATTTTTGGTGAAA--TC-GGGGT
1 AAAATG-GAA-TTTT-G-GAAAGTTCGGGGGT
* * *
36647886 CAAAAATGGAATTTTAGAAAGTTTGGAGGT
1 --AAAATGGAATTTTGGAAAGTTCGGGGGT
* *
36647916 AAAATGGTAATTTTTGGTGAAA--TCGAGGTT
1 AAAATGG-AA-TTTT-G-GAAAGTTCGGGGGT
* *
36647946 AAAAATAGAATTTTGGAAAGTT-TGGGGT
1 -AAAATGGAATTTTGGAAAGTTCGGGGGT
36647974 AAAATGGTAATTTT
1 AAAATGG-AATTTT
36647988 TAGAAGTTTT
Statistics
Matches: 140, Mismatches: 26, Indels: 48
0.65 0.12 0.22
Matches are distributed among these distances:
27 17 0.12
28 30 0.21
29 29 0.21
30 33 0.24
31 20 0.14
32 11 0.08
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.33
Consensus pattern (28 bp):
AAAATGGAATTTTGGAAAGTTCGGGGGT
Found at i:36647988 original size:29 final size:29
Alignment explanation
Indices: 36647720--36648031 Score: 127
Period size: 29 Copynumber: 10.6 Consensus size: 29
36647710 AAAAATGGGA
*
36647720 TTTTAGAAAGTTTAGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTT-GGGGTAAAATGGTAAT
*** * *
36647750 TTTTGGTGAAA-TCAAGGTTAAAAATGG-GA-
1 TTTT-G-GAAAGTTTGGGGT-AAAATGGTAAT
*
36647779 TTTTGGAAAGTTCGGGGGTAAAATGGTAAT
1 TTTTGGAAAGTT-TGGGGTAAAATGGTAAT
* * *
36647809 TTTTGGTGAAA--TCGAGGTTAAAAATAG-AA-
1 TTTT-G-GAAAGTTTG-GGGT-AAAATGGTAAT
* *
36647838 TTTTGGAAGGTTTGGGGGTAAAATGATAAT
1 TTTTGGAAAGTTT-GGGGTAAAATGGTAAT
*
36647868 TTTTGGTGAAA--TCGGGGTCAAAAATGG-AA-
1 TTTT-G-GAAAGTTTGGGGT--AAAATGGTAAT
*
36647897 TTTTAGAAAGTTTGGAGGTAAAATGGTAAT
1 TTTTGGAAAGTTTGG-GGTAAAATGGTAAT
* * *
36647927 TTTTGGTGAAA--TCGAGGTTAAAAATAG-AA-
1 TTTT-G-GAAAGTTTG-GGGT-AAAATGGTAAT
36647956 TTTTGGAAAGTTTGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTTGGGGTAAAATGGTAAT
* *
36647985 TTTTAG-AAGTTTTGAGGTTAAAAT-GTAAT
1 TTTTGGAAAG-TTTG-GGGTAAAATGGTAAT
* *
36648014 TTTTTGAAATTTTGGGGT
1 TTTTGGAAAGTTTGGGGT
36648032 CATAAATATA
Statistics
Matches: 210, Mismatches: 36, Indels: 74
0.66 0.11 0.23
Matches are distributed among these distances:
27 21 0.10
28 34 0.16
29 62 0.30
30 49 0.23
31 29 0.14
32 15 0.07
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (29 bp):
TTTTGGAAAGTTTGGGGTAAAATGGTAAT
Found at i:36648044 original size:30 final size:28
Alignment explanation
Indices: 36647947--36648045 Score: 83
Period size: 29 Copynumber: 3.4 Consensus size: 28
36647937 ATCGAGGTTA
* * *
36647947 AAAATAGAA-TTTTGGAAAGTTTGGGGT
1 AAAATATAATTTTTAGAAATTTTGGGGT
* * *
36647974 AAAATGGTAATTTTTAGAAGTTTTGAGGTT
1 AAAAT-ATAATTTTTAGAAATTTTG-GGGT
* *
36648004 AAAATGTAATTTTTTGAAATTTTGGGGT
1 AAAATATAATTTTTAGAAATTTTGGGGT
36648032 CATAAATATAATTT
1 -A-AAATATAATTT
36648046 ATGAATAGTT
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
27 5 0.09
28 5 0.09
29 29 0.51
30 18 0.32
ACGTcount: A:0.36, C:0.01, G:0.21, T:0.41
Consensus pattern (28 bp):
AAAATATAATTTTTAGAAATTTTGGGGT
Found at i:36649085 original size:201 final size:201
Alignment explanation
Indices: 36648849--36649566 Score: 974
Period size: 200 Copynumber: 3.6 Consensus size: 201
36648839 TTCGAACCCC
** * *
36648849 AGCTTCCTGATGAGATGTTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGATGCAG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* ** *
36648914 ATTGAAACAAGTGAGGCTATCATCTTTCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
*
36648979 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATAAGATACTGAGAAGTAGGTCGAAGCAATAAA
131 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGCAATAAA
36649044 ATGGTT
196 ATGGTT
* *
36649050 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCAG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* * *
36649115 ATAAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTATACCAACTTGACGCTCG
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
** * *
36649180 ATGCGGGCAAATCTTCGAA-CCCAGCTTCCTGATGAGATACTGAGAAGCT-GGTCGAAGCAATAG
131 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAG-TAGGTCGAAGCAATAA
36649243 AATGGTT
195 AATGGTT
*
36649250 AGCCTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGC-G
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* ** * * * * *
36649314 AATTGAAACAAACGATGCGGTCATCTTCTTGATGAGATACTGAGAAGAAGACCAAATCAAACTCA
66 -ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACC-AA-C--A-TGA
* * *
36649379 AGCTCGATATGAGCAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
125 CGCTCGATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGC
*
36649444 AATAAAGTGGTT
190 AATAAAATGGTT
* * * * * * **
36649456 AGCTTCTTGATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCGGATGAAACACAAAGAAGTGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* * *
36649521 ATCAAAACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAG
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAG
36649567 AAGACCAAGT
Statistics
Matches: 455, Mismatches: 52, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
199 1 0.00
200 150 0.33
201 138 0.30
202 1 0.00
205 22 0.05
206 142 0.31
207 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (201 bp):
AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGCAATAAA
ATGGTT
Found at i:36650026 original size:15 final size:16
Alignment explanation
Indices: 36650006--36650041 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
36649996 AATTTAAATT
36650006 AAAAGTCCAAAA-TAC
1 AAAAGTCCAAAATTAC
36650021 AAAAGTCCAAAATTAC
1 AAAAGTCCAAAATTAC
36650037 AAAAG
1 AAAAG
36650042 CACAATTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.61, C:0.17, G:0.08, T:0.14
Consensus pattern (16 bp):
AAAAGTCCAAAATTAC
Found at i:36650125 original size:34 final size:35
Alignment explanation
Indices: 36650082--36650147 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 35
36650072 AGATACACCA
*
36650082 AAGCCCAATTACAAGGGCCC-AATTAACCCAACAC
1 AAGCCCAATTACAAGGGCCCAAAATAACCCAACAC
* *
36650116 AAGCCCAATTAGACGGGCCCAAAATAACCCAA
1 AAGCCCAATTACAAGGGCCCAAAATAACCCAA
36650148 AACAGAAGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 18 0.64
35 10 0.36
ACGTcount: A:0.42, C:0.33, G:0.14, T:0.11
Consensus pattern (35 bp):
AAGCCCAATTACAAGGGCCCAAAATAACCCAACAC
Found at i:36651983 original size:29 final size:28
Alignment explanation
Indices: 36651935--36652212 Score: 222
Period size: 29 Copynumber: 9.5 Consensus size: 28
36651925 CAAAAATTTG
*
36651935 AAAAATTCCATTTTTGACTCTGAAACTTCC
1 AAAAATTCCA-TTTTAAC-CTGAAACTTCC
* *
36651965 AAAAATTACATTTTAA-CTCGAAAATTTCC
1 AAAAATTCCATTTTAACCT-G-AAACTTCC
* *
36651994 AAAAATTCCATTTTAACCCT-AAGATTTTC
1 AAAAATTCCATTTTAA-CCTGAA-ACTTCC
* *
36652023 AAATATTCCATTTTGACCTCGAAACTTCC
1 AAAAATTCCATTTTAACCT-GAAACTTCC
* * *
36652052 AAAAATTACATTTTAACCCTAAAATTTCC
1 AAAAATTCCATTTTAA-CCTGAAACTTCC
* * * *
36652081 AAAAATTCTATTTTTGACCCTAAAACTTTC
1 AAAAATTCCA-TTTT-AACCTGAAACTTCC
* *
36652111 AAAAAATACATTTTAACCTCGAAA-TCTCC
1 AAAAATTCCATTTTAACCT-GAAACT-TCC
36652140 AAAAATTCCATTTTAACCTCGAAACTTCC
1 AAAAATTCCATTTTAACCT-GAAACTTCC
* *
36652169 AACAATTCCATTTTGACCTCGAAACTT-C
1 AAAAATTCCATTTTAACCT-GAAACTTCC
*
36652197 AAAAATTACCCTTTTA
1 AAAAATT-CCATTTTA
36652213 CCCCCGGATG
Statistics
Matches: 202, Mismatches: 32, Indels: 29
0.77 0.12 0.11
Matches are distributed among these distances:
27 2 0.01
28 18 0.09
29 143 0.71
30 36 0.18
31 3 0.01
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.35
Consensus pattern (28 bp):
AAAAATTCCATTTTAACCTGAAACTTCC
Found at i:36652169 original size:88 final size:87
Alignment explanation
Indices: 36651956--36652186 Score: 297
Period size: 88 Copynumber: 2.6 Consensus size: 87
36651946 TTTTGACTCT
* * *
36651956 GAAACTTCCAAAAATTACATTTTAA-CTCGAAAATTTCCAAAAATTCCATTTTAACCCTAAGATT
1 GAAACTTCCAAAAATTACATTTTAACCTCG-AAATTTCCAAAAATTCCATTTTGACCCTAAAACT
* * * *
36652020 TTCAAATATTCCATTTTGACCTC
65 TTCAAAAAATACATTTTAACCTC
* *
36652043 GAAACTTCCAAAAATTACATTTTAACC-CTAAAATTTCCAAAAATTCTATTTTTGACCCTAAAAC
1 GAAACTTCCAAAAATTACATTTTAACCTC-GAAATTTCCAAAAATTCCA-TTTTGACCCTAAAAC
36652107 TTTCAAAAAATACATTTTAACCTC
64 TTTCAAAAAATACATTTTAACCTC
* * *
36652131 GAAA-TCTCCAAAAATTCCATTTTAACCTCGAAACTTCCAACAATTCCATTTTGACC
1 GAAACT-TCCAAAAATTACATTTTAACCTCGAAATTTCCAAAAATTCCATTTTGACC
36652187 TCGAAACTTC
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
87 52 0.42
88 72 0.58
89 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.34
Consensus pattern (87 bp):
GAAACTTCCAAAAATTACATTTTAACCTCGAAATTTCCAAAAATTCCATTTTGACCCTAAAACTT
TCAAAAAATACATTTTAACCTC
Found at i:36652177 original size:146 final size:146
Alignment explanation
Indices: 36651905--36652205 Score: 414
Period size: 146 Copynumber: 2.1 Consensus size: 146
36651895 TAAATTGTCT
* * * *
36651905 AAAAATTACATTTTTACCCCCAAAAATTTGAAAAATTCCATTTTTGACTCTGAAACTTCCAAAAA
1 AAAAATTACATTTTTACACCCAAAAATTTCAAAAATTCCATTTTTGACCCTAAAACTTCCAAAAA
* * * * *
36651970 TTACATTTTAACTCGAAAATTTCCAAAAATTCCATTTTAACCCTAAGATTTTCAAATATTCCATT
66 ATACATTTTAACTCGAAAATCTCCAAAAATTCCATTTTAACCCGAAGACTTCCAAATATTCCATT
36652035 TTGACCTCGAAACTTCC
131 TTGACCTCGAAACTT-C
* * *
36652052 AAAAATTACA-TTTTA-ACCCTAAAATTTCCAAAAATTCTATTTTTGACCCTAAAACTTTCAAAA
1 AAAAATTACATTTTTACACCCAAAAATTT-CAAAAATTCCATTTTTGACCCTAAAACTTCCAAAA
36652115 AATACATTTTAACCTCG-AAATCTCCAAAAATTCCATTTTAACCTCGAA-ACTTCCAACA-ATTC
65 AATACATTTTAA-CTCGAAAATCTCCAAAAATTCCATTTTAACC-CGAAGACTTCCAA-ATATTC
36652177 CATTTTGACCTCGAAACTTC
127 CATTTTGACCTCGAAACTTC
36652197 AAAAATTAC
1 AAAAATTAC
36652206 CCTTTTACCC
Statistics
Matches: 138, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
145 20 0.14
146 100 0.72
147 18 0.13
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.34
Consensus pattern (146 bp):
AAAAATTACATTTTTACACCCAAAAATTTCAAAAATTCCATTTTTGACCCTAAAACTTCCAAAAA
ATACATTTTAACTCGAAAATCTCCAAAAATTCCATTTTAACCCGAAGACTTCCAAATATTCCATT
TTGACCTCGAAACTTC
Found at i:36652272 original size:58 final size:59
Alignment explanation
Indices: 36652196--36652308 Score: 149
Period size: 58 Copynumber: 1.9 Consensus size: 59
36652186 CTCGAAACTT
* * *
36652196 CAAAAATTACCCTTTTACCCCCGGAT-GTCTAAAATATCATTTTTAACTCCAAATTTTCC
1 CAAAAATTACCATTTTACCCCCGG-TCATCCAAAATATCATTTTTAACTCCAAATTTTCC
* * *
36652255 CAAAAA-TACCATTTTACCCCCGGTCATCCAAAGTCTCATTTTTAGCTCCAAATT
1 CAAAAATTACCATTTTACCCCCGGTCATCCAAAATATCATTTTTAACTCCAAATT
36652309 GCATCTTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 1 0.02
58 40 0.85
59 6 0.13
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (59 bp):
CAAAAATTACCATTTTACCCCCGGTCATCCAAAATATCATTTTTAACTCCAAATTTTCC
Found at i:36659366 original size:153 final size:153
Alignment explanation
Indices: 36659197--36659481 Score: 464
Period size: 153 Copynumber: 1.9 Consensus size: 153
36659187 AGTGTTTTGA
* *
36659197 AAACTTTTGAAAAGGATATCCGATTTGCATGAATTACGAAAATCACACTTAACACGTTAAAGTGC
1 AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
* *
36659262 GAT-TTCTCGAAGTTTTCACACGAAAGGACATTGCCTCGTTTTAAAATTACTTGTGATATAGATA
66 GATCTT-TCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATA
36659326 TATAAAAATTGAAGGATGTTTCGG
130 TATAAAAATTGAAGGATGTTTCGG
* **
36659350 AAACTTTTGAAGAGGATATTTGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
1 AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
* * *
36659415 GATCTTTCGAAGTTTTCACACGACAGGACATTGCGTCGCTTTAAAATTATTTGTAATATAGATAT
66 GATCTTTCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATAT
36659480 AT
131 AT
36659482 GTTTTGAGAA
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
153 119 0.98
154 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (153 bp):
AAACTTTTGAAAAGGATATCCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCGC
GATCTTTCGAAGTTTTCACACGAAAGGACATTGCCTCGCTTTAAAATTACTTGTAATATAGATAT
ATAAAAATTGAAGGATGTTTCGG
Found at i:36660031 original size:29 final size:29
Alignment explanation
Indices: 36659992--36660090 Score: 85
Period size: 29 Copynumber: 3.3 Consensus size: 29
36659982 GTAAAATATA
36659992 ATTTTGGGAAAATTTAAGGTTAAAAATGGG
1 ATTTT-GGAAAATTTAAGGTTAAAAATGGG
* * * * *
36660022 ATTTTAGAAAGTTTAGGGGT-AAAATGGTA
1 ATTTTGGAAAATTTAAGGTTAAAAATGG-G
* *
36660051 ATTTTTGGTGAAA-TCAAGGTTAAAAATGGG
1 A-TTTTGG-AAAATTTAAGGTTAAAAATGGG
36660081 ATTTTGGAAA
1 ATTTTGGAAA
36660091 GTTCGGGGGT
Statistics
Matches: 52, Mismatches: 13, Indels: 10
0.69 0.17 0.13
Matches are distributed among these distances:
28 9 0.17
29 18 0.35
30 16 0.31
31 9 0.17
ACGTcount: A:0.38, C:0.01, G:0.26, T:0.34
Consensus pattern (29 bp):
ATTTTGGAAAATTTAAGGTTAAAAATGGG
Found at i:36660070 original size:59 final size:58
Alignment explanation
Indices: 36660008--36660291 Score: 424
Period size: 59 Copynumber: 4.8 Consensus size: 58
36659998 GGAAAATTTA
* * *
36660008 AGGTTAAAAATGGGATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCA
1 AGGTTAAAAATGGAATTTTGGAAAGTTT-GGGGTAAAATGGTAATTTTTGGTGAAATCG
* *
36660067 AGGTTAAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTT-TGGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
36660126 AGGTTAAAAATAGAATTTTGGAAGGTTTGGGGGTAAAATGATAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTTT-GGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
36660185 GGGTCAAAAATGGAATTTTAGAAAGTTTGGAGGTAAAATGGTAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTTTGG-GGTAAAATGGTAATTTTTGGTGAAATCG
*
36660244 AGGTTAAAAATAGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTT
1 AGGTTAAAAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTT
36660292 AGAAGTTTTG
Statistics
Matches: 204, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
58 20 0.10
59 184 0.90
ACGTcount: A:0.36, C:0.02, G:0.29, T:0.34
Consensus pattern (58 bp):
AGGTTAAAAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTTGGTGAAATCG
Found at i:36660113 original size:29 final size:28
Alignment explanation
Indices: 36660073--36660290 Score: 101
Period size: 30 Copynumber: 7.5 Consensus size: 28
36660063 ATCAAGGTTA
*
36660073 AAAATGGGATTTTGGAAAGTTCGGGGGT
1 AAAATGGAATTTTGGAAAGTTCGGGGGT
* *
36660101 AAAATGGTAATTTTTGGTGAAA--TCGAGGTT
1 AAAATGG-AA-TTTT-G-GAAAGTTCGGGGGT
* * *
36660131 AAAAATAGAATTTTGGAAGGTTTGGGGGT
1 -AAAATGGAATTTTGGAAAGTTCGGGGGT
*
36660160 AAAATGATAATTTTTGGTGAAA--TC-GGGGT
1 AAAATG-GAA-TTTT-G-GAAAGTTCGGGGGT
* * *
36660189 CAAAAATGGAATTTTAGAAAGTTTGGAGGT
1 --AAAATGGAATTTTGGAAAGTTCGGGGGT
* *
36660219 AAAATGGTAATTTTTGGTGAAA--TCGAGGTT
1 AAAATGG-AA-TTTT-G-GAAAGTTCGGGGGT
* *
36660249 AAAAATAGAATTTTGGAAAGTT-TGGGGT
1 -AAAATGGAATTTTGGAAAGTTCGGGGGT
36660277 AAAATGGTAATTTT
1 AAAATGG-AATTTT
36660291 TAGAAGTTTT
Statistics
Matches: 140, Mismatches: 26, Indels: 48
0.65 0.12 0.22
Matches are distributed among these distances:
27 17 0.12
28 30 0.21
29 29 0.21
30 33 0.24
31 20 0.14
32 11 0.08
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.33
Consensus pattern (28 bp):
AAAATGGAATTTTGGAAAGTTCGGGGGT
Found at i:36660261 original size:30 final size:30
Alignment explanation
Indices: 36660042--36660262 Score: 117
Period size: 30 Copynumber: 7.4 Consensus size: 30
36660032 GTTTAGGGGT
*
36660042 AAAATGGTAATTTTTGGTGAAATCAAGGTTA
1 AAAATGG-AATTTTTGGTGAAATCGAGGTTA
* * *
36660073 AAAATGGGA-TTTT-G-GAAAGTTCGGGGGT-
1 AAAATGGAATTTTTGGTGAAA--TCGAGGTTA
36660101 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
1 AAAATGG-AATTTTTGGTGAAATCGAGGTTA
* * * * *
36660132 AAAATAGAA-TTTT-G-GAAGGTTTGGGGGT-
1 AAAATGGAATTTTTGGTGAA--ATCGAGGTTA
* * *
36660160 AAAATGATAATTTTTGGTGAAATCGGGGTCA
1 AAAATG-GAATTTTTGGTGAAATCGAGGTTA
* *
36660191 AAAATGGAA-TTTT--AGAAAGTTTGGAGG-T-
1 AAAATGGAATTTTTGGTGAAA---TCGAGGTTA
36660219 AAAATGGTAATTTTTGGTGAAATCGAGGTTA
1 AAAATGG-AATTTTTGGTGAAATCGAGGTTA
*
36660250 AAAATAGAATTTT
1 AAAATGGAATTTT
36660263 GGAAAGTTTG
Statistics
Matches: 141, Mismatches: 26, Indels: 47
0.66 0.12 0.22
Matches are distributed among these distances:
27 11 0.08
28 21 0.15
29 32 0.23
30 39 0.28
31 27 0.19
32 11 0.08
ACGTcount: A:0.36, C:0.03, G:0.28, T:0.33
Consensus pattern (30 bp):
AAAATGGAATTTTTGGTGAAATCGAGGTTA
Found at i:36660291 original size:29 final size:29
Alignment explanation
Indices: 36660023--36660334 Score: 127
Period size: 29 Copynumber: 10.6 Consensus size: 29
36660013 AAAAATGGGA
*
36660023 TTTTAGAAAGTTTAGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTT-GGGGTAAAATGGTAAT
*** * *
36660053 TTTTGGTGAAA-TCAAGGTTAAAAATGG-GA-
1 TTTT-G-GAAAGTTTGGGGT-AAAATGGTAAT
*
36660082 TTTTGGAAAGTTCGGGGGTAAAATGGTAAT
1 TTTTGGAAAGTT-TGGGGTAAAATGGTAAT
* * *
36660112 TTTTGGTGAAA--TCGAGGTTAAAAATAG-AA-
1 TTTT-G-GAAAGTTTG-GGGT-AAAATGGTAAT
* *
36660141 TTTTGGAAGGTTTGGGGGTAAAATGATAAT
1 TTTTGGAAAGTTT-GGGGTAAAATGGTAAT
*
36660171 TTTTGGTGAAA--TCGGGGTCAAAAATGG-AA-
1 TTTT-G-GAAAGTTTGGGGT--AAAATGGTAAT
*
36660200 TTTTAGAAAGTTTGGAGGTAAAATGGTAAT
1 TTTTGGAAAGTTTGG-GGTAAAATGGTAAT
* * *
36660230 TTTTGGTGAAA--TCGAGGTTAAAAATAG-AA-
1 TTTT-G-GAAAGTTTG-GGGT-AAAATGGTAAT
36660259 TTTTGGAAAGTTTGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTTGGGGTAAAATGGTAAT
* *
36660288 TTTTAG-AAGTTTTGAGGTTAAAAT-GTAAT
1 TTTTGGAAAG-TTTG-GGGTAAAATGGTAAT
* *
36660317 TTTTTGAAATTTTGGGGT
1 TTTTGGAAAGTTTGGGGT
36660335 CATAAATATA
Statistics
Matches: 210, Mismatches: 36, Indels: 74
0.66 0.11 0.23
Matches are distributed among these distances:
27 21 0.10
28 34 0.16
29 62 0.30
30 49 0.23
31 29 0.14
32 15 0.07
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (29 bp):
TTTTGGAAAGTTTGGGGTAAAATGGTAAT
Found at i:36660347 original size:30 final size:28
Alignment explanation
Indices: 36660250--36660348 Score: 83
Period size: 29 Copynumber: 3.4 Consensus size: 28
36660240 ATCGAGGTTA
* * *
36660250 AAAATAGAA-TTTTGGAAAGTTTGGGGT
1 AAAATATAATTTTTAGAAATTTTGGGGT
* * *
36660277 AAAATGGTAATTTTTAGAAGTTTTGAGGTT
1 AAAAT-ATAATTTTTAGAAATTTTG-GGGT
* *
36660307 AAAATGTAATTTTTTGAAATTTTGGGGT
1 AAAATATAATTTTTAGAAATTTTGGGGT
36660335 CATAAATATAATTT
1 -A-AAATATAATTT
36660349 ATGAATAGTT
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
27 5 0.09
28 5 0.09
29 29 0.51
30 18 0.32
ACGTcount: A:0.36, C:0.01, G:0.21, T:0.41
Consensus pattern (28 bp):
AAAATATAATTTTTAGAAATTTTGGGGT
Found at i:36661389 original size:201 final size:201
Alignment explanation
Indices: 36661153--36661870 Score: 974
Period size: 200 Copynumber: 3.6 Consensus size: 201
36661143 TTCGAACCCC
** * *
36661153 AGCTTCCTGATGAGATGTTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGATGCAG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* ** *
36661218 ATTGAAACAAGTGAGGCTATCATCTTTCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
*
36661283 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATAAGATACTGAGAAGTAGGTCGAAGCAATAAA
131 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGCAATAAA
36661348 ATGGTT
196 ATGGTT
* *
36661354 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCAG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* * *
36661419 ATAAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTATACCAACTTGACGCTCG
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
** * *
36661484 ATGCGGGCAAATCTTCGAA-CCCAGCTTCCTGATGAGATACTGAGAAGCT-GGTCGAAGCAATAG
131 ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAG-TAGGTCGAAGCAATAA
36661547 AATGGTT
195 AATGGTT
*
36661554 AGCCTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGC-G
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* ** * * * * *
36661618 AATTGAAACAAACGATGCGGTCATCTTCTTGATGAGATACTGAGAAGAAGACCAAATCAAACTCA
66 -ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACC-AA-C--A-TGA
* * *
36661683 AGCTCGATATGAGCAAATCTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
125 CGCTCGATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGC
*
36661748 AATAAAGTGGTT
190 AATAAAATGGTT
* * * * * * **
36661760 AGCTTCTTGATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCGGATGAAACACAAAGAAGTGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
* * *
36661825 ATCAAAACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAG
66 ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAG
36661871 AAGACCAAGT
Statistics
Matches: 455, Mismatches: 52, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
199 1 0.00
200 150 0.33
201 138 0.30
202 1 0.00
205 22 0.05
206 142 0.31
207 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (201 bp):
AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGCAG
ATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTATACCAACATGACGCTCG
ATATGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGCAATAAA
ATGGTT
Found at i:36662330 original size:15 final size:16
Alignment explanation
Indices: 36662310--36662345 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
36662300 AATTTAAATT
36662310 AAAAGTCCAAAA-TAC
1 AAAAGTCCAAAATTAC
36662325 AAAAGTCCAAAATTAC
1 AAAAGTCCAAAATTAC
36662341 AAAAG
1 AAAAG
36662346 CACAATTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.61, C:0.17, G:0.08, T:0.14
Consensus pattern (16 bp):
AAAAGTCCAAAATTAC
Found at i:36662429 original size:34 final size:35
Alignment explanation
Indices: 36662386--36662451 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 35
36662376 AGATACACCA
*
36662386 AAGCCCAATTACAAGGGCCC-AATTAACCCAACAC
1 AAGCCCAATTACAAGGGCCCAAAATAACCCAACAC
* *
36662420 AAGCCCAATTAGACGGGCCCAAAATAACCCAA
1 AAGCCCAATTACAAGGGCCCAAAATAACCCAA
36662452 AACAGAAGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 18 0.64
35 10 0.36
ACGTcount: A:0.42, C:0.33, G:0.14, T:0.11
Consensus pattern (35 bp):
AAGCCCAATTACAAGGGCCCAAAATAACCCAACAC
Found at i:36664287 original size:29 final size:28
Alignment explanation
Indices: 36664239--36664516 Score: 222
Period size: 29 Copynumber: 9.5 Consensus size: 28
36664229 CAAAAATTTG
*
36664239 AAAAATTCCATTTTTGACTCTGAAACTTCC
1 AAAAATTCCA-TTTTAAC-CTGAAACTTCC
* *
36664269 AAAAATTACATTTTAA-CTCGAAAATTTCC
1 AAAAATTCCATTTTAACCT-G-AAACTTCC
* *
36664298 AAAAATTCCATTTTAACCCT-AAGATTTTC
1 AAAAATTCCATTTTAA-CCTGAA-ACTTCC
* *
36664327 AAATATTCCATTTTGACCTCGAAACTTCC
1 AAAAATTCCATTTTAACCT-GAAACTTCC
* * *
36664356 AAAAATTACATTTTAACCCTAAAATTTCC
1 AAAAATTCCATTTTAA-CCTGAAACTTCC
* * * *
36664385 AAAAATTCTATTTTTGACCCTAAAACTTTC
1 AAAAATTCCA-TTTT-AACCTGAAACTTCC
* *
36664415 AAAAAATACATTTTAACCTCGAAA-TCTCC
1 AAAAATTCCATTTTAACCT-GAAACT-TCC
36664444 AAAAATTCCATTTTAACCTCGAAACTTCC
1 AAAAATTCCATTTTAACCT-GAAACTTCC
* *
36664473 AACAATTCCATTTTGACCTCGAAACTT-C
1 AAAAATTCCATTTTAACCT-GAAACTTCC
*
36664501 AAAAATTACCCTTTTA
1 AAAAATT-CCATTTTA
36664517 CCCCCGGATG
Statistics
Matches: 202, Mismatches: 32, Indels: 29
0.77 0.12 0.11
Matches are distributed among these distances:
27 2 0.01
28 18 0.09
29 143 0.71
30 36 0.18
31 3 0.01
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.35
Consensus pattern (28 bp):
AAAAATTCCATTTTAACCTGAAACTTCC
Found at i:36664473 original size:88 final size:87
Alignment explanation
Indices: 36664260--36664490 Score: 297
Period size: 88 Copynumber: 2.6 Consensus size: 87
36664250 TTTTGACTCT
* * *
36664260 GAAACTTCCAAAAATTACATTTTAA-CTCGAAAATTTCCAAAAATTCCATTTTAACCCTAAGATT
1 GAAACTTCCAAAAATTACATTTTAACCTCG-AAATTTCCAAAAATTCCATTTTGACCCTAAAACT
* * * *
36664324 TTCAAATATTCCATTTTGACCTC
65 TTCAAAAAATACATTTTAACCTC
* *
36664347 GAAACTTCCAAAAATTACATTTTAACC-CTAAAATTTCCAAAAATTCTATTTTTGACCCTAAAAC
1 GAAACTTCCAAAAATTACATTTTAACCTC-GAAATTTCCAAAAATTCCA-TTTTGACCCTAAAAC
36664411 TTTCAAAAAATACATTTTAACCTC
64 TTTCAAAAAATACATTTTAACCTC
* * *
36664435 GAAA-TCTCCAAAAATTCCATTTTAACCTCGAAACTTCCAACAATTCCATTTTGACC
1 GAAACT-TCCAAAAATTACATTTTAACCTCGAAATTTCCAAAAATTCCATTTTGACC
36664491 TCGAAACTTC
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
87 52 0.42
88 72 0.58
89 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.34
Consensus pattern (87 bp):
GAAACTTCCAAAAATTACATTTTAACCTCGAAATTTCCAAAAATTCCATTTTGACCCTAAAACTT
TCAAAAAATACATTTTAACCTC
Found at i:36664481 original size:146 final size:146
Alignment explanation
Indices: 36664209--36664509 Score: 414
Period size: 146 Copynumber: 2.1 Consensus size: 146
36664199 TAAATTGTCT
* * * *
36664209 AAAAATTACATTTTTACCCCCAAAAATTTGAAAAATTCCATTTTTGACTCTGAAACTTCCAAAAA
1 AAAAATTACATTTTTACACCCAAAAATTTCAAAAATTCCATTTTTGACCCTAAAACTTCCAAAAA
* * * * *
36664274 TTACATTTTAACTCGAAAATTTCCAAAAATTCCATTTTAACCCTAAGATTTTCAAATATTCCATT
66 ATACATTTTAACTCGAAAATCTCCAAAAATTCCATTTTAACCCGAAGACTTCCAAATATTCCATT
36664339 TTGACCTCGAAACTTCC
131 TTGACCTCGAAACTT-C
* * *
36664356 AAAAATTACA-TTTTA-ACCCTAAAATTTCCAAAAATTCTATTTTTGACCCTAAAACTTTCAAAA
1 AAAAATTACATTTTTACACCCAAAAATTT-CAAAAATTCCATTTTTGACCCTAAAACTTCCAAAA
36664419 AATACATTTTAACCTCG-AAATCTCCAAAAATTCCATTTTAACCTCGAA-ACTTCCAACA-ATTC
65 AATACATTTTAA-CTCGAAAATCTCCAAAAATTCCATTTTAACC-CGAAGACTTCCAA-ATATTC
36664481 CATTTTGACCTCGAAACTTC
127 CATTTTGACCTCGAAACTTC
36664501 AAAAATTAC
1 AAAAATTAC
36664510 CCTTTTACCC
Statistics
Matches: 138, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
145 20 0.14
146 100 0.72
147 18 0.13
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.34
Consensus pattern (146 bp):
AAAAATTACATTTTTACACCCAAAAATTTCAAAAATTCCATTTTTGACCCTAAAACTTCCAAAAA
ATACATTTTAACTCGAAAATCTCCAAAAATTCCATTTTAACCCGAAGACTTCCAAATATTCCATT
TTGACCTCGAAACTTC
Found at i:36664576 original size:58 final size:59
Alignment explanation
Indices: 36664500--36664612 Score: 149
Period size: 58 Copynumber: 1.9 Consensus size: 59
36664490 CTCGAAACTT
* * *
36664500 CAAAAATTACCCTTTTACCCCCGGAT-GTCTAAAATATCATTTTTAACTCCAAATTTTCC
1 CAAAAATTACCATTTTACCCCCGG-TCATCCAAAATATCATTTTTAACTCCAAATTTTCC
* * *
36664559 CAAAAA-TACCATTTTACCCCCGGTCATCCAAAGTCTCATTTTTAGCTCCAAATT
1 CAAAAATTACCATTTTACCCCCGGTCATCCAAAATATCATTTTTAACTCCAAATT
36664613 GCATCTTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 1 0.02
58 40 0.85
59 6 0.13
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (59 bp):
CAAAAATTACCATTTTACCCCCGGTCATCCAAAATATCATTTTTAACTCCAAATTTTCC
Found at i:36672500 original size:29 final size:29
Alignment explanation
Indices: 36672468--36672556 Score: 67
Period size: 29 Copynumber: 3.0 Consensus size: 29
36672458 ATGGATACCT
*
36672468 GGGGGCAAAATGGTAATTTTGGTGAAATC
1 GGGGGAAAAATGGTAATTTTGGTGAAATC
* **
36672497 GGGGTTAAAAATGG-AATTTT--AAAAGATTC
1 GGGG-GAAAAATGGTAATTTTGGTGAA-A-TC
*
36672526 GGGGGTAAAATGGTAATTTTCGGGTGAAATC
1 GGGGGAAAAATGGTAATTTT--GGTGAAATC
36672557 AGGGTTAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
27 2 0.05
28 8 0.18
29 22 0.50
30 7 0.16
31 2 0.05
32 1 0.02
33 2 0.05
ACGTcount: A:0.34, C:0.06, G:0.31, T:0.29
Consensus pattern (29 bp):
GGGGGAAAAATGGTAATTTTGGTGAAATC
Found at i:36672632 original size:65 final size:64
Alignment explanation
Indices: 36672468--36672630 Score: 248
Period size: 65 Copynumber: 2.6 Consensus size: 64
36672458 ATGGATACCT
*
36672468 GGGGGCAAAATGGTAA-TTTTGGTGAAATCGGGG-T----TAAAAATGGAATTTTAAAAGATTC
1 GGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATAAAAATGGAATTTTAAAAGATTC
* *
36672526 GGGGGTAAAATGGTAATTTTCGGGTGAAATCAGGGTTAAAATAAAAATGGAATTTTAAAAGATTC
1 GGGGGTAAAATGGTAATTTT-TGGTGAAATCGGGGTTAAAATAAAAATGGAATTTTAAAAGATTC
36672591 GGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAA
1 GGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAA
36672631 ATGGGATTTA
Statistics
Matches: 93, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
58 15 0.16
59 3 0.03
60 12 0.13
61 1 0.01
64 18 0.19
65 44 0.47
ACGTcount: A:0.37, C:0.04, G:0.29, T:0.29
Consensus pattern (64 bp):
GGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATAAAAATGGAATTTTAAAAGATTC
Found at i:36672682 original size:31 final size:30
Alignment explanation
Indices: 36672643--36672912 Score: 418
Period size: 30 Copynumber: 8.9 Consensus size: 30
36672633 GGGATTTAGG
*
36672643 AAAGTTTAGGGGGTCAAAATGTAACTTTT-G-
1 AAAGTTT-TGGGGTCAAAATGTAA-TTTTGGA
*
36672673 AAAGTTTTAGGGTCAAAATGTAATTTTGGA
1 AAAGTTTTGGGGTCAAAATGTAATTTTGGA
36672703 AAAGTTTTGGGGGTCAAAATGTAATTTTTGGA
1 AAAGTTTT-GGGGTCAAAATGTAA-TTTTGGA
*
36672735 AAAGTTTTGGGGTTAAAATGTAATTTTGGA
1 AAAGTTTTGGGGTCAAAATGTAATTTTGGA
36672765 AAAGTTTTGGGGGTCAAAATGTAATTTTGGA
1 AAAGTTTT-GGGGTCAAAATGTAATTTTGGA
36672796 AAAGTTTTGGGGTCAAAATGTAATTTTGGA
1 AAAGTTTTGGGGTCAAAATGTAATTTTGGA
36672826 AAAGTTTTAGGGGTCAAAATGTAATTTTGGA
1 AAAGTTTT-GGGGTCAAAATGTAATTTTGGA
36672857 AAAGTTTTGGGGTCAAAATGTAATTTTGGA
1 AAAGTTTTGGGGTCAAAATGTAATTTTGGA
* * *
36672887 AAAATTTTAGGATCAAAATGTAATTT
1 AAAGTTTTGGGGTCAAAATGTAATTT
36672913 CTAGATATTT
Statistics
Matches: 226, Mismatches: 8, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
28 4 0.02
29 15 0.07
30 105 0.46
31 87 0.38
32 15 0.07
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.37
Consensus pattern (30 bp):
AAAGTTTTGGGGTCAAAATGTAATTTTGGA
Found at i:36672823 original size:61 final size:61
Alignment explanation
Indices: 36672643--36672912 Score: 438
Period size: 61 Copynumber: 4.4 Consensus size: 61
36672633 GGGATTTAGG
* *
36672643 AAAGTTTAGGGGGTCAAAATGTAACTTTT-G-AAAGTTTTAGGGTCAAAATGTAATTTTGGA
1 AAAGTTTTGGGGGTCAAAATGTAA-TTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGGA
*
36672703 AAAGTTTTGGGGGTCAAAATGTAATTTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGA
1 AAAGTTTTGGGGGTCAAAATGTAA-TTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGGA
36672765 AAAGTTTTGGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGGA
1 AAAGTTTTGGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGGA
*
36672826 AAAGTTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGGA
1 AAAGTTTTGGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGGA
* * *
36672887 AAAATTTT-AGGATCAAAATGTAATTT
1 AAAGTTTTGGGGGTCAAAATGTAATTT
36672913 CTAGATATTT
Statistics
Matches: 199, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
60 43 0.22
61 104 0.52
62 52 0.26
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.37
Consensus pattern (61 bp):
AAAGTTTTGGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGGA
Found at i:36674289 original size:61 final size:61
Alignment explanation
Indices: 36674184--36674453 Score: 415
Period size: 61 Copynumber: 4.4 Consensus size: 61
36674174 AAATATCTAG
* *
36674184 AAATTACATTTTGA-TCCTAAAATTTTTCC-AAATTACATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCCA
36674243 AAATTACATTTTGACCCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCCCA
1 AAATTACATTTTGACCCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTT-CCA
*
36674305 AAATTACATTTTGACCCC-AAAACTTTTCCAAAATTACATTTTAACCCCAAAAACTTTTCCAA
1 AAATTACATTTTGACCCCTAAAACTTTTCCAAAATTACATTTTGACCCC-AAAACTTTTCC-A
* * *
36674367 AAATTACATTTTGACCCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAAC-TTTCAA
1 AAATTACATTTTGACCCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCCA
36674427 AAAGTTACATTTTGACCCCT-AAACTTT
1 AAA-TTACATTTTGACCCCTAAAACTTT
36674454 CCTAAATCCC
Statistics
Matches: 197, Mismatches: 7, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
59 14 0.07
60 24 0.12
61 77 0.39
62 54 0.27
63 28 0.14
ACGTcount: A:0.37, C:0.25, G:0.03, T:0.35
Consensus pattern (61 bp):
AAATTACATTTTGACCCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCCA
Found at i:36674454 original size:30 final size:30
Alignment explanation
Indices: 36674184--36674453 Score: 409
Period size: 31 Copynumber: 8.9 Consensus size: 30
36674174 AAATATCTAG
* * *
36674184 AAATTACATTTTGATCCTAAAATTTTTCC-
1 AAATTACATTTTGACCCCAAAACTTTTCCA
36674213 AAATTACATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
36674243 AAATTACATTTTGACCCCTAAAACTTTTCCA
1 AAATTACATTTTGACCCC-AAAACTTTTCCA
36674274 AAATTACATTTTGACCCCAAAACTTTTCCCA
1 AAATTACATTTTGACCCCAAAACTTTT-CCA
36674305 AAATTACATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
*
36674335 AAATTACATTTTAACCCCAAAAACTTTTCCAA
1 AAATTACATTTTGACCCC-AAAACTTTTCC-A
36674367 AAATTACATTTTGACCCCCAAAACTTTTCCA
1 AAATTACATTTTGA-CCCCAAAACTTTTCCA
* *
36674398 AAATTACATTTTGACCCTAAAAC-TTTCAA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
*
36674427 AAAGTTACATTTTGACCCCTAAACTTT
1 AAA-TTACATTTTGACCCCAAAACTTT
36674454 CCTAAATCCC
Statistics
Matches: 224, Mismatches: 9, Indels: 14
0.91 0.04 0.06
Matches are distributed among these distances:
29 34 0.15
30 73 0.33
31 88 0.39
32 25 0.11
33 4 0.02
ACGTcount: A:0.37, C:0.25, G:0.03, T:0.35
Consensus pattern (30 bp):
AAATTACATTTTGACCCCAAAACTTTTCCA
Found at i:36674583 original size:29 final size:29
Alignment explanation
Indices: 36674495--36674627 Score: 101
Period size: 29 Copynumber: 4.6 Consensus size: 29
36674485 CACCAAAATT
*
36674495 TTACCATTTTACCCCCCGAATCTTTTTAAAA
1 TTACCATTTTA-CCCCCGAATC-TTCTAAAA
* * * ** *
36674526 TT-CCATTTTAACCCTGATTTCACCGAAAA
1 TTACCATTTTACCCCCGA-ATCTTCTAAAA
*
36674555 TTACCATTTTACCCCCGAATCTTTTAAAA
1 TTACCATTTTACCCCCGAATCTTCTAAAA
* * *
36674584 TT-CCATTTTTACCCCCGATTC-ACCAAAA
1 TTACCA-TTTTACCCCCGAATCTTCTAAAA
*
36674612 TTACCATTTTGCCCCC
1 TTACCATTTTACCCCC
36674628 AGGTATCCAT
Statistics
Matches: 79, Mismatches: 19, Indels: 11
0.72 0.17 0.10
Matches are distributed among these distances:
28 18 0.23
29 36 0.46
30 23 0.29
31 2 0.03
ACGTcount: A:0.28, C:0.32, G:0.05, T:0.36
Consensus pattern (29 bp):
TTACCATTTTACCCCCGAATCTTCTAAAA
Found at i:36675899 original size:21 final size:21
Alignment explanation
Indices: 36675875--36675918 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
36675865 AGAATTTATT
36675875 TTGTTATTTGAAGTGAGACTA
1 TTGTTATTTGAAGTGAGACTA
* ***
36675896 TTGTTTTTTTTTGTGAGACTA
1 TTGTTATTTGAAGTGAGACTA
36675917 TT
1 TT
36675919 TGTTGGGAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.05, G:0.20, T:0.55
Consensus pattern (21 bp):
TTGTTATTTGAAGTGAGACTA
Found at i:36682641 original size:29 final size:29
Alignment explanation
Indices: 36682603--36682836 Score: 171
Period size: 29 Copynumber: 8.2 Consensus size: 29
36682593 AAGGGTATAA
36682603 TTTT-GAAGTTTCGAGGTCAAAATGGAAT
1 TTTTGGAAGTTTCGAGGTCAAAATGGAAT
* *
36682631 TGTTGGAAGTTTCGAGGTTAAAATGGAA-
1 TTTTGGAAGTTTCGAGGTCAAAATGGAAT
* * *
36682659 TTTTGG-AGATTTCGAGGTTAAAATGTATT
1 TTTTGGAAG-TTTCGAGGTCAAAATGGAAT
* * *
36682688 TTTTGAAAGTTT-TAGGGTCAAAATAGAAT
1 TTTTGGAAGTTTCGA-GGTCAAAATGGAAT
* * * *
36682717 TTTTGGAAATTT-TAGGGTTAAAATGTAAT
1 TTTTGGAAGTTTCGA-GGTCAAAATGGAAT
36682746 TTTTGGAAGTTTCGAGGTCAAAAT-GAA-
1 TTTTGGAAGTTTCGAGGTCAAAATGGAAT
* * * * * *
36682773 ATTTGAAAAATCTTAGGGGTTAAAATGGAAT
1 TTTTG-GAAGT-TTCGAGGTCAAAATGGAAT
* *
36682804 TTTTGGAAATTTTCGA-GTTAAAAT-GAAT
1 TTTTGG-AAGTTTCGAGGTCAAAATGGAAT
36682832 TTTTG
1 TTTTG
36682837 TTTTGGAAGT
Statistics
Matches: 164, Mismatches: 31, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
27 6 0.04
28 40 0.24
29 102 0.62
30 9 0.05
31 7 0.04
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.39
Consensus pattern (29 bp):
TTTTGGAAGTTTCGAGGTCAAAATGGAAT
Found at i:36682672 original size:57 final size:56
Alignment explanation
Indices: 36682601--36682834 Score: 206
Period size: 58 Copynumber: 4.1 Consensus size: 56
36682591 AAAAGGGTAT
* * * *
36682601 AATTTTG-AAGTTTCGAGGTCAAAATGGAATTGTTGGAAGTTTCGAGGTTAAAATGG
1 AATTTTGAAAATTTCGAGGTTAAAATGGAATTTTTGGAAGTTTCGAGGTCAAAAT-G
* * * * * *
36682657 AATTTTGGAGATTTCGAGGTTAAAATGTATTTTTTGAAAGTTT-TAGGGTCAAAATAG
1 AATTTTGAAAATTTCGAGGTTAAAATGGAATTTTTGGAAGTTTCGA-GGTCAAAAT-G
* * *
36682714 AATTTTTGGAAATTT-TAGGGTTAAAATGTAATTTTTGGAAGTTTCGAGGTCAAAATG
1 AA-TTTTGAAAATTTCGA-GGTTAAAATGGAATTTTTGGAAGTTTCGAGGTCAAAATG
* * * * *
36682771 AAATTTGAAAAATCTTAGGGGTTAAAATGGAATTTTTGGAAATTTTCGA-GTTAAAATG
1 AATTTTG-AAAAT-TTCGAGGTTAAAATGGAATTTTTGG-AAGTTTCGAGGTCAAAATG
36682829 AATTTT
1 AATTTT
36682835 TGTTTTGGAA
Statistics
Matches: 146, Mismatches: 23, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
56 12 0.08
57 47 0.32
58 78 0.53
59 9 0.06
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (56 bp):
AATTTTGAAAATTTCGAGGTTAAAATGGAATTTTTGGAAGTTTCGAGGTCAAAATG
Found at i:36682804 original size:87 final size:86
Alignment explanation
Indices: 36682617--36682836 Score: 252
Period size: 87 Copynumber: 2.5 Consensus size: 86
36682607 GAAGTTTCGA
* * *
36682617 GGTCAAAATGGAATTGTTGG-AAGTTTCGAGGTTAAAATGGAA-TTTTGGAGATTTCGAGGTTAA
1 GGTCAAAATGGAATTTTTGGAAATTTTCG-GGTTAAAAT-GAATTTTTGGAGATTTCGAGGTCAA
** * *
36682680 AATGTATTTTTTGAAAGTTTTAG
64 AATGTATAATTTGAAAATCTTAG
* *
36682703 GGTCAAAATAGAATTTTTGGAAATTTTAGGGTTAAAATGTAATTTTTGGA-AGTTTCGAGGTCAA
1 GGTCAAAATGGAATTTTTGGAAATTTTCGGGTTAAAATG-AATTTTTGGAGA-TTTCGAGGTCAA
36682767 AATG-A-AATTTGAAAAATCTTAGG
64 AATGTATAATTTG-AAAATCTTA-G
* *
36682790 GGTTAAAATGGAATTTTTGGAAATTTTCGAGTTAAAATGAATTTTTG
1 GGTCAAAATGGAATTTTTGGAAATTTTCGGGTTAAAATGAATTTTTG
36682837 TTTTGGAAGT
Statistics
Matches: 115, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
85 5 0.04
86 46 0.40
87 64 0.56
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.38
Consensus pattern (86 bp):
GGTCAAAATGGAATTTTTGGAAATTTTCGGGTTAAAATGAATTTTTGGAGATTTCGAGGTCAAAA
TGTATAATTTGAAAATCTTAG
Found at i:36684729 original size:34 final size:35
Alignment explanation
Indices: 36684678--36684743 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 35
36684668 GTCTTCTGTT
*
36684678 TTGGGTTATTTTGGGCCCGTCTAATTGGGCTTGTG
1 TTGGGTTATATTGGGCCCGTCTAATTGGGCTTGTG
* *
36684713 TTGGGTTA-ATTGGGCCCTTGTAATTGGGCTT
1 TTGGGTTATATTGGGCCCGTCTAATTGGGCTT
36684744 TGGTGTATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 20 0.71
35 8 0.29
ACGTcount: A:0.11, C:0.14, G:0.33, T:0.42
Consensus pattern (35 bp):
TTGGGTTATATTGGGCCCGTCTAATTGGGCTTGTG
Found at i:36684812 original size:15 final size:16
Alignment explanation
Indices: 36684784--36684819 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
36684774 CCCAATTGTG
36684784 CTTTTGTAATTTTGGA
1 CTTTTGTAATTTTGGA
36684800 CTTTTGT-ATTTTGGA
1 CTTTTGTAATTTTGGA
36684815 CTTTT
1 CTTTT
36684820 AATTTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.14, C:0.08, G:0.17, T:0.61
Consensus pattern (16 bp):
CTTTTGTAATTTTGGA
Found at i:36685936 original size:201 final size:201
Alignment explanation
Indices: 36685258--36685975 Score: 958
Period size: 200 Copynumber: 3.6 Consensus size: 201
36685248 ACTTGGTCTT
* * ** ** * * *
36685258 CTTCTCAGTGTCTCATCAGGAAGATGACCGCATCACTTGTTTTGATCCACTTCTTTGTGTTTCAT
1 CTTCTCAGTATCTCATCAGAAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
* * * * *
36685323 CCGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGCTAACCACTTTATTGCTTCGA
66 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
* * * *
36685388 CCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTTGAAGATTTGCTCATATCGAGCTTGAGTTT
131 CCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCA---T
* *
36685453 GATTTGGTCTT
193 G--TTGGTATA
** *
36685464 CTTCTCAGTATCTCATCA-AGAAGATGACCGCATCGTTTGTTTCAAT-TCGCTTCTTTGTATCTC
1 CTTCTCAGTATCTCATCAGA-AAGATGACCGCATCACTTGTTTCAATCT-GCTTCTCTGTATCTC
* *
36685527 ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAGGCTAACCATTCTATTGCTTC
64 ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
* ** *
36685592 GACC-AGCTTCTCAGTATCTCATCAGGAAGCT-GGGTTCGAAGATTTGCCCGCATCGAGCGTCAA
129 GACCTA-CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCAT
36685655 GTTGGTATA
193 GTTGGTATA
* * * ** *
36685664 CTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTTTATCTGCTTCTCTGTATCTTAT
1 CTTCTCAGTATCTCATCAGAAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
36685729 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
66 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
*
36685794 CCTACTTCTCAGTATCTTATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCATGTT
131 CCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCATGTT
36685859 GGTATA
196 GGTATA
** * *
36685865 CTTCTCAGTATCTCATCAGAAAGATGATAGCCTCACTTGTTTCAATCTGCATCTCTGTATCTCAT
1 CTTCTCAGTATCTCATCAGAAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
**
36685930 CAGGAAGACGAATTTGGTCCACTTCTCAACATCTCATCAGGAAGCT
66 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCT
36685976 GGGGTTCGAA
Statistics
Matches: 452, Mismatches: 53, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
200 148 0.33
201 140 0.31
202 1 0.00
205 25 0.06
206 138 0.31
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (201 bp):
CTTCTCAGTATCTCATCAGAAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
CCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCATGTT
GGTATA
Found at i:36685995 original size:153 final size:156
Alignment explanation
Indices: 36685797--36686135 Score: 459
Period size: 160 Copynumber: 2.2 Consensus size: 156
36685787 GCTTCGACCT
* * *
36685797 ACTTCTCAGTATCTTATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGT-CATG-TTG
1 ACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGCATGATTG
*
36685860 GTATACTTCTCAG-TATCTCATCAGAAAGATGATAGCCTCACTTGTTTCAATCTGCATCTCTGTA
66 GTATACTTCTCAGCTATCTCATCAGAAAGATGACAGCCTCACTTGTTTCAATCTGCATCTCTGTA
*
36685924 TCTCATCAGGAAGACGAATTTGGTCC
131 TCTCATCAGAAAGACGAATTTGGTCC
* **
36685950 ACTTCTCAACATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGTTTGAT
1 ACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGT--GCATGA-
* * * * * * * * * *
36686015 TTGGTCTTCTTCTCTGTCTGTCTCATCAGGAAGATGACCGCGTCATTTGTTTCAATCTGCTTCTT
63 TTGGTATACTTCTCAG-CTATCTCATCAGAAAGATGACAGCCTCACTTGTTTCAATCTGCATCTC
36686080 TGTATCTCATCAGAAAGACGAATTTGGTCC
127 TGTATCTCATCAGAAAGACGAATTTGGTCC
36686110 ACTTCTCAATATCTCATCAGGAAGCT
1 ACTTCTCAATATCTCATCAGGAAGCT
36686136 AACCATTTTA
Statistics
Matches: 160, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
153 52 0.32
156 2 0.01
158 13 0.08
160 93 0.58
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (156 bp):
ACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGCATGATTG
GTATACTTCTCAGCTATCTCATCAGAAAGATGACAGCCTCACTTGTTTCAATCTGCATCTCTGTA
TCTCATCAGAAAGACGAATTTGGTCC
Found at i:36686075 original size:361 final size:353
Alignment explanation
Indices: 36685598--36686297 Score: 1017
Period size: 361 Copynumber: 2.0 Consensus size: 353
36685588 CTTCGACCAG
** *
36685598 CTTCTCAGTATCTCATCAGGAAGCTGGGTTCGAAGATTTGCCCGCATCGAGCGTCAAGTTGGTAT
1 CTTCTCAACATCTCATCAGGAAGCTGGGTTCGAAGATTTGCCCACATCGAGCGTCAAGTTGGTAT
** *
36685663 ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTTTATCTGCTTCTCTGTATCTTA
66 ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTCTGTATCTCA
* *
36685728 TCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGAAAGACGAATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
* * * *
36685793 ACCTACTTCTCAGTATCTTATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTC-ATG
196 ACCTACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCCTCGA-G
* *
36685857 TTGGTATACTTCTCAGTATCTCATCAGAAAGATGA-TAGCCTCACTTGTTTCAATCTGCATCTCT
260 TTGGTATACTTCTCAGTATCTCATCAGAAAGATGACCA-CCTCACTTGTTTCAATCCGCATCTCT
*
36685921 GTATCTCATCAGGAAGACGAATTTGGTCCA
324 GTATCTCATCACGAAGACGAATTTGGTCCA
* ** *
36685951 CTTCTCAACATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGTTTGATT
1 CTTCTCAACATCTCATCAGGAAGCT-GGGTTCGAAGATTTGCCCACATCGAGC----G-TCAAGT
* * * * * *
36686016 TGGTCTTCTTCTCTGTCTGTCTCATCAGGAAGATGACCGCGTCATTTGTTTCAATCTGCTTCTTT
60 TGGTATACTTCTCTG--TATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTCT
36686081 GTATCTCATCAGAAAGACGAATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTAACCATTTTA
123 GTATCTCATCAGAAAGACGAATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTAACCATTTTA
* *
36686146 TTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTGAG
188 TTGCTTCGACCTACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAG
* * *
36686211 CCTCGAGTTGGTATACTTCTCTGTATCTTATCAGGAAGATGACCACCTCACTTGTTTCAATCCGC
253 CCTCGAGTTGGTATACTTCTCAGTATCTCATCAGAAAGATGACCACCTCACTTGTTTCAATCCGC
*
36686276 TTCTCTGTATCTCATCACGAAG
318 ATCTCTGTATCTCATCACGAAG
36686298 CTAACCATTT
Statistics
Matches: 306, Mismatches: 31, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
353 23 0.08
354 25 0.08
358 1 0.00
359 16 0.05
361 239 0.78
362 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (353 bp):
CTTCTCAACATCTCATCAGGAAGCTGGGTTCGAAGATTTGCCCACATCGAGCGTCAAGTTGGTAT
ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTCTGTATCTCA
TCAGAAAGACGAATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
ACCTACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCCTCGAGT
TGGTATACTTCTCAGTATCTCATCAGAAAGATGACCACCTCACTTGTTTCAATCCGCATCTCTGT
ATCTCATCACGAAGACGAATTTGGTCCA
Found at i:36686816 original size:30 final size:27
Alignment explanation
Indices: 36686777--36686873 Score: 86
Period size: 29 Copynumber: 3.4 Consensus size: 27
36686767 CCCTAAACTA
* *
36686777 TTCATAAATTATATTTATGACCCCAAAAT
1 TTCAAAAATTACATTT-T-ACCCCAAAAT
* *
36686806 TTCAAAAAATTACATTTTAACCTCAAAAC
1 TTC-AAAAATTACATTTT-ACCCCAAAAT
*
36686835 TTCTAAAAATTACCATTTTACCCCAAACT
1 TTC-AAAAATTA-CATTTTACCCCAAAAT
*
36686864 TTCCAAAATT
1 TTCAAAAATT
36686874 CTATTTTTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
28 6 0.11
29 33 0.59
30 17 0.30
ACGTcount: A:0.42, C:0.22, G:0.01, T:0.35
Consensus pattern (27 bp):
TTCAAAAATTACATTTTACCCCAAAAT
Found at i:36686832 original size:29 final size:27
Alignment explanation
Indices: 36686777--36686939 Score: 80
Period size: 29 Copynumber: 5.6 Consensus size: 27
36686767 CCCTAAACTA
* * *
36686777 TTCATAAATTATATTTATGACCCCAAAAT
1 TTCAAAAATTACATTT-T-ACCTCAAAAT
*
36686806 TTCAAAAAATTACATTTTAACCTCAAAAC
1 TTC-AAAAATTACATTTT-ACCTCAAAAT
* *
36686835 TTCTAAAAATTACCATTTTACCCCAAACT
1 TTC-AAAAATTA-CATTTTACCTCAAAAT
* *
36686864 TTCCAAAATT-CTATTTTTAACCTC--GAT
1 TTCAAAAATTAC-A-TTTT-ACCTCAAAAT
*
36686891 TTCACCAAAAATTACCATTTTACCTCCAAACT
1 TT---CAAAAATTA-CATTTTACCT-CAAAAT
* *
36686923 TTCTAAAATTCCATTTT
1 TTCAAAAATTACATTTT
36686940 TGACCCCGAT
Statistics
Matches: 103, Mismatches: 18, Indels: 27
0.70 0.12 0.18
Matches are distributed among these distances:
26 1 0.01
27 4 0.04
28 16 0.16
29 48 0.47
30 29 0.28
31 1 0.01
32 4 0.04
ACGTcount: A:0.38, C:0.23, G:0.01, T:0.37
Consensus pattern (27 bp):
TTCAAAAATTACATTTTACCTCAAAAT
Found at i:36686859 original size:58 final size:55
Alignment explanation
Indices: 36686796--36687149 Score: 253
Period size: 59 Copynumber: 6.1 Consensus size: 55
36686786 TATATTTATG
* *
36686796 ACCCCAAAATTTCAAAAAATTACATTTTAACCTCAAAACTT-CTAAAAATTACCATTTT
1 ACCCCAAACTTTC-AAAAATT-CATTTTAACCTC--AACTTACCAAAAATTACCATTTT
* * *
36686854 ACCCCAAACTTTCCAAAATTCTATTTTTAACCTCGATTTCACCAAAAATTACCATTTT
1 ACCCCAAACTTTCAAAAATTC-A-TTTTAACCTCAACTT-ACCAAAAATTACCATTTT
* * * * * *
36686912 ACCTCCAAACTTTCTAAAATTCCATTTTTGACCCCGATTTCACCAAAAATTATCATTTT
1 ACC-CCAAACTTTCAAAAATT-CA-TTTTAACCTCAACTT-ACCAAAAATTACCATTTT
* * * *
36686971 ACCCCCAAACCTTCCAAAATTCTATTTTTAACCTCGATTTCACCAAAAATTACCATTTT
1 A-CCCCAAACTTTCAAAAATTC-A-TTTTAACCTCAACTT-ACCAAAAATTACCATTTT
* * * ** *
36687030 ACCCCGAACTTTCCAAAATCCCATTTTTAACCTTGATTTCACCAAAAATTACCATTTT
1 ACCCCAAACTTTCAAAAAT-TCA-TTTTAACCTCAACTT-ACCAAAAATTACCATTTT
* * * * * * *
36687088 ACCCCTAAACTTTCTAAAATCCCATTTTTAACCTTAAATTTCCCAAAATTA-TATTTT
1 ACCCC-AAACTTTCAAAAAT-TCA-TTTTAACCTCAACTTACCAAAAATTACCATTTT
36687145 ACCCC
1 ACCCC
36687150 CGAGAGTAAA
Statistics
Matches: 261, Mismatches: 25, Indels: 21
0.85 0.08 0.07
Matches are distributed among these distances:
56 4 0.02
57 17 0.07
58 107 0.41
59 130 0.50
60 3 0.01
ACGTcount: A:0.35, C:0.28, G:0.02, T:0.35
Consensus pattern (55 bp):
ACCCCAAACTTTCAAAAATTCATTTTAACCTCAACTTACCAAAAATTACCATTTT
Found at i:36686940 original size:29 final size:29
Alignment explanation
Indices: 36686811--36686940 Score: 85
Period size: 29 Copynumber: 4.5 Consensus size: 29
36686801 AAAATTTCAA
* * *
36686811 AAAATTACATTTTAACCTCAAAAC-TTCT
1 AAAATTCCATTTTTACCTCCAAACTTTCT
*
36686839 AAAAATTACCA-TTTTACC-CCAAACTTTCC
1 -AAAATT-CCATTTTTACCTCCAAACTTTCT
* * *
36686868 AAAATTCTATTTTTAACCT-C-GA-TTTCACCA
1 AAAATTCCATTTTT-ACCTCCAAACTTT---CT
36686898 AAAATTACCA-TTTTACCTCCAAACTTTCT
1 AAAATT-CCATTTTTACCTCCAAACTTTCT
36686927 AAAATTCCATTTTT
1 AAAATTCCATTTTT
36686941 GACCCCGATT
Statistics
Matches: 78, Mismatches: 10, Indels: 26
0.68 0.09 0.23
Matches are distributed among these distances:
27 5 0.06
28 19 0.24
29 34 0.44
30 14 0.18
31 3 0.04
32 3 0.04
ACGTcount: A:0.37, C:0.25, G:0.01, T:0.38
Consensus pattern (29 bp):
AAAATTCCATTTTTACCTCCAAACTTTCT
Found at i:36687135 original size:29 final size:29
Alignment explanation
Indices: 36687042--36687136 Score: 88
Period size: 29 Copynumber: 3.2 Consensus size: 29
36687032 CCCGAACTTT
*
36687042 CCAAAATCCCATTTTTAACCTT-GATTTC
1 CCAAAATCCCATTTTTAACCTTAAATTTC
* * *
36687070 ACCAAAAATTACCA-TTTTACCCCTAAACTTT-
1 -CC-AAAA-TCCCATTTTTAACCTTAAA-TTTC
*
36687101 CTAAAATCCCATTTTTAACCTTAAATTTC
1 CCAAAATCCCATTTTTAACCTTAAATTTC
36687130 CCAAAAT
1 CCAAAAT
36687137 TATATTTTAC
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
28 7 0.14
29 23 0.45
30 13 0.25
31 5 0.10
32 3 0.06
ACGTcount: A:0.36, C:0.27, G:0.01, T:0.36
Consensus pattern (29 bp):
CCAAAATCCCATTTTTAACCTTAAATTTC
Found at i:36687135 original size:59 final size:58
Alignment explanation
Indices: 36686839--36687121 Score: 431
Period size: 59 Copynumber: 4.8 Consensus size: 58
36686829 CAAAACTTCT
*
36686839 AAAAATTACCATTTTACCCCAAACTTTCCAAAATTCTATTTTTAACCTCGATTTCACC
1 AAAAATTACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACC
* * *
36686897 AAAAATTACCATTTTACCTCCAAACTTTCTAAAATTCCATTTTTGACCCCGATTTCACC
1 AAAAATTACCATTTTACC-CCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACC
* * *
36686956 AAAAATTATCATTTTACCCCCAAACCTTCCAAAATTCTATTTTTAACCTCGATTTCACC
1 AAAAATTACCATTTTA-CCCCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACC
* * *
36687015 AAAAATTACCATTTTACCCCGAACTTTCCAAAATCCCATTTTTAACCTTGATTTCACC
1 AAAAATTACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACC
* *
36687073 AAAAATTACCATTTTACCCCTAAACTTTCTAAAATCCCATTTTTAACCT
1 AAAAATTACCATTTTACCCC-AAACTTTCCAAAATTCCATTTTTAACCT
36687122 TAAATTTCCC
Statistics
Matches: 204, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
58 75 0.37
59 127 0.62
60 2 0.01
ACGTcount: A:0.34, C:0.28, G:0.02, T:0.36
Consensus pattern (58 bp):
AAAAATTACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACC
Found at i:36687850 original size:153 final size:153
Alignment explanation
Indices: 36687646--36687930 Score: 464
Period size: 153 Copynumber: 1.9 Consensus size: 153
36687636 TTCTCAAAAC
* *
36687646 ATATATCTATATTACAAATAATTTTAAAGCGACGCAATGTCCTGTCGTGTGAAAACTTCGA-AAG
1 ATATATCTATATCACAAATAATTTTAAAACGACGCAATGTCCTGTCGTGTGAAAACTTCGAGAA-
* *
36687710 ATCGCGCTTTAACGTGTTAAGTGTGATTTTCGTAATTCATGCGAATCAAATATCCTCTTCAAAAG
65 ATCGCACTTTAACGTGTTAAGTGTGATTTTCGTAATTCATGCAAATCAAATATCCTCTTCAAAAG
36687775 TTTCCGAAACATCCTTCAATTTTT
130 TTTCCGAAACATCCTTCAATTTTT
* * *
36687799 ATATATCTATATCACAAGTAATTTTAAAACGAGGCAATGTCCTTTCGTGTGAAAACTTCGAGAAA
1 ATATATCTATATCACAAATAATTTTAAAACGACGCAATGTCCTGTCGTGTGAAAACTTCGAGAAA
** *
36687864 TCGCACTTTAACGTGTTAAGTGTGATTTTCGTAATTCATGCAAATCGGATATCCTTTTCAAAAGT
66 TCGCACTTTAACGTGTTAAGTGTGATTTTCGTAATTCATGCAAATCAAATATCCTCTTCAAAAGT
36687929 TT
131 TT
36687931 TCAAAACACT
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
153 119 0.98
154 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35
Consensus pattern (153 bp):
ATATATCTATATCACAAATAATTTTAAAACGACGCAATGTCCTGTCGTGTGAAAACTTCGAGAAA
TCGCACTTTAACGTGTTAAGTGTGATTTTCGTAATTCATGCAAATCAAATATCCTCTTCAAAAGT
TTCCGAAACATCCTTCAATTTTT
Found at i:36688221 original size:21 final size:21
Alignment explanation
Indices: 36688197--36688240 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
36688187 AGAATTTATT
36688197 TTGTTATTTGAAGTGAGACTA
1 TTGTTATTTGAAGTGAGACTA
* ***
36688218 TTGTTTTTTTTTGTGAGACTA
1 TTGTTATTTGAAGTGAGACTA
36688239 TT
1 TT
36688241 TGTTGGGAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.05, G:0.20, T:0.55
Consensus pattern (21 bp):
TTGTTATTTGAAGTGAGACTA
Found at i:36694910 original size:58 final size:59
Alignment explanation
Indices: 36694817--36694929 Score: 149
Period size: 58 Copynumber: 1.9 Consensus size: 59
36694807 AAAAAGATGC
* * *
36694817 AATTTGGAGCTAAAAATGAGACTTTGGATGACCGGGGGTAAAATGGT-ATTTTTGGGAA
1 AATTTGGAGCTAAAAATGAGACTTTAGATCACCGGGGGTAAAAGGGTAATTTTTGGGAA
* * *
36694875 AATTTGGAGTTAAAAATGATATTTTAGA-CATCCGGGGGTAAAAGGGTAATTTTTG
1 AATTTGGAGCTAAAAATGAGACTTTAGATCA-CCGGGGGTAAAAGGGTAATTTTTG
36694930 AAGTTTCGAG
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 1 0.02
58 39 0.83
59 7 0.15
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (59 bp):
AATTTGGAGCTAAAAATGAGACTTTAGATCACCGGGGGTAAAAGGGTAATTTTTGGGAA
Found at i:36694946 original size:29 final size:28
Alignment explanation
Indices: 36694922--36695190 Score: 197
Period size: 29 Copynumber: 9.2 Consensus size: 28
36694912 GTAAAAGGGT
36694922 AATTTTTGAAGTTTCGAGGTCAAAATGG
1 AATTTTTGAAGTTTCGAGGTCAAAATGG
* *
36694950 AATTGTTGGAAGTTTCGAGGTTAAAATGG
1 AATT-TTTGAAGTTTCGAGGTCAAAATGG
* * *
36694979 AATTTTTGGAGATTTCGAGGTTAAAATGT
1 AATTTTTGAAG-TTTCGAGGTCAAAATGG
* * *
36695008 ATTTTTTGAAAGTTT-TAGGGTCAAAAATAG
1 AATTTTTG-AAGTTTCGA-GGTC-AAAATGG
* * * *
36695038 AATTTTTGGAAATTT-TAGGGTTAAAATGT
1 AATTTTT-GAAGTTTCGA-GGTCAAAATGG
36695067 AATTTTTGGAAGTTTCGAGGTCAAAATGG
1 AATTTTT-GAAGTTTCGAGGTCAAAATGG
* * * *
36695096 AATATTTGAAAATCTTAG-GGTTAAAATGG
1 AATTTTTG-AAGT-TTCGAGGTCAAAATGG
* * *
36695125 AATTTTTGGAAATTTTCGA-GTTAAAATGT
1 AATTTTT-G-AAGTTTCGAGGTCAAAATGG
36695154 AATTTTTGGAAGTTTC-AGAGTCAAAAATGG
1 AATTTTT-GAAGTTTCGAG-GTC-AAAATGG
36695184 AATTTTT
1 AATTTTT
36695191 CAAATTTTTG
Statistics
Matches: 196, Mismatches: 31, Indels: 26
0.77 0.12 0.10
Matches are distributed among these distances:
27 1 0.01
28 17 0.09
29 131 0.67
30 46 0.23
31 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.39
Consensus pattern (28 bp):
AATTTTTGAAGTTTCGAGGTCAAAATGG
Found at i:36694995 original size:58 final size:58
Alignment explanation
Indices: 36694913--36695190 Score: 253
Period size: 58 Copynumber: 4.8 Consensus size: 58
36694903 CATCCGGGGG
* * * *
36694913 TAAAAGGGTAATTTTT-GAAGTTTCGAGGTCAAAATGGAATTGTTGGAAGTTTCGAGGT
1 TAAAATGG-AATTTTTGGAAATTTCGAGGTTAAAATGGAATTTTTGGAAGTTTCGAGGT
* * * * *
36694971 TAAAATGGAATTTTTGGAGATTTCGAGGTTAAAATGTATTTTTTGAAAGTTT-TAGGGT
1 TAAAATGGAATTTTTGGAAATTTCGAGGTTAAAATGGAATTTTTGGAAGTTTCGA-GGT
* * * *
36695029 CAAAAATAGAATTTTTGGAAATTT-TAGGGTTAAAATGTAATTTTTGGAAGTTTCGAGGT
1 -TAAAATGGAATTTTTGGAAATTTCGA-GGTTAAAATGGAATTTTTGGAAGTTTCGAGGT
* * * * *
36695088 CAAAATGGAATATTTGAAAATCTTAG-GGTTAAAATGGAATTTTTGGAAATTTTCGA-GT
1 TAAAATGGAATTTTTGGAAAT-TTCGAGGTTAAAATGGAATTTTTGG-AAGTTTCGAGGT
* * *
36695146 TAAAATGTAATTTTTGGAAGTTTC-AGAGTCAAAAATGGAATTTTT
1 TAAAATGGAATTTTTGGAAATTTCGAG-GT-TAAAATGGAATTTTT
36695191 CAAATTTTTG
Statistics
Matches: 179, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
57 11 0.06
58 96 0.54
59 71 0.40
60 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (58 bp):
TAAAATGGAATTTTTGGAAATTTCGAGGTTAAAATGGAATTTTTGGAAGTTTCGAGGT
Found at i:36695060 original size:59 final size:59
Alignment explanation
Indices: 36694966--36695164 Score: 201
Period size: 59 Copynumber: 3.4 Consensus size: 59
36694956 TGGAAGTTTC
* * *
36694966 GAGGTTAAAATGGAATTTTTGGAGA-TTTCGAGGTTAAAATGTATTTTTTGAAAGTTTTA
1 GAGGTCAAAATGGAATTTTTGGAAATTTTAG-GGTTAAAATGTATTTTTTGAAAGTTTTA
* * * *
36695025 G-GGTCAAAAATAGAATTTTTGGAAATTTTAGGGTTAAAATGTAATTTTTGGAAG-TTTC
1 GAGGTC-AAAATGGAATTTTTGGAAATTTTAGGGTTAAAATGTATTTTTTGAAAGTTTTA
* * * * * *
36695083 GAGGTCAAAATGGAATATTTGAAAATCTTAGGGTTAAAATGGAATTTTTGGAAA-TTTTC
1 GAGGTCAAAATGGAATTTTTGGAAATTTTAGGGTTAAAAT-GTATTTTTTGAAAGTTTTA
* *
36695142 GA-GTTAAAATGTAATTTTTGGAA
1 GAGGTCAAAATGGAATTTTTGGAA
36695165 GTTTCAGAGT
Statistics
Matches: 116, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
58 54 0.47
59 58 0.50
60 4 0.03
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.39
Consensus pattern (59 bp):
GAGGTCAAAATGGAATTTTTGGAAATTTTAGGGTTAAAATGTATTTTTTGAAAGTTTTA
Found at i:36695118 original size:146 final size:146
Alignment explanation
Indices: 36694910--36695220 Score: 416
Period size: 146 Copynumber: 2.1 Consensus size: 146
36694900 AGACATCCGG
** * * *
36694910 GGGTAAAAGGGTAATTTTTGAAGTTTCGAGGTCAAAATGGAATTGTTGGAAGTTTCGAGGTTAAA
1 GGGTAAAAATGTAATTTTTGAAGTTTCGAGGTCAAAATGGAATTGTTGAAAATTTAGAGGTTAAA
* * * *
36694975 ATGGAATTTTTGGAGA-TTTCGAGGTTAAAATGTATTTTTTGAAAGTTTTAGGGTCAAAAATAGA
66 ATGGAATTTTTGGAAATTTTCGA-GTTAAAATGTAATTTTTGAAAGTTTCAGAGTCAAAAATAGA
*
36695039 ATTTTTGGAAA-TTTT-A
130 ATTTTT-CAAATTTTTGA
*
36695055 GGGTTAAAATGTAATTTTTGGAAGTTTCGAGGTCAAAATGGAATAT-TTGAAAATCTTAG-GGTT
1 GGGTAAAAATGTAATTTTT-GAAGTTTCGAGGTCAAAATGGAAT-TGTTGAAAAT-TTAGAGGTT
* *
36695118 AAAATGGAATTTTTGGAAATTTTCGAGTTAAAATGTAATTTTTGGAAGTTTCAGAGTCAAAAATG
63 AAAATGGAATTTTTGGAAATTTTCGAGTTAAAATGTAATTTTTGAAAGTTTCAGAGTCAAAAATA
*
36695183 GAATTTTTCAAATTTTTGG
128 GAATTTTTCAAATTTTTGA
36695202 GGGTAAAAATGTAATTTTT
1 GGGTAAAAATGTAATTTTT
36695221 AGACAATTTA
Statistics
Matches: 145, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
145 19 0.13
146 98 0.68
147 28 0.19
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.39
Consensus pattern (146 bp):
GGGTAAAAATGTAATTTTTGAAGTTTCGAGGTCAAAATGGAATTGTTGAAAATTTAGAGGTTAAA
ATGGAATTTTTGGAAATTTTCGAGTTAAAATGTAATTTTTGAAAGTTTCAGAGTCAAAAATAGAA
TTTTTCAAATTTTTGA
Found at i:36697029 original size:34 final size:35
Alignment explanation
Indices: 36696978--36697043 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 35
36696968 GTCTTCTGTT
*
36696978 TTGGGTTATTTTGGGCCCGTCTAATTGGGCTTGTG
1 TTGGGTTATATTGGGCCCGTCTAATTGGGCTTGTG
* *
36697013 TTGGGTTA-ATTGGGCCCTTGTAATTGGGCTT
1 TTGGGTTATATTGGGCCCGTCTAATTGGGCTT
36697044 TGGTGTATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 20 0.71
35 8 0.29
ACGTcount: A:0.11, C:0.14, G:0.33, T:0.42
Consensus pattern (35 bp):
TTGGGTTATATTGGGCCCGTCTAATTGGGCTTGTG
Found at i:36697112 original size:15 final size:16
Alignment explanation
Indices: 36697084--36697119 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
36697074 CCCAATTGTG
36697084 CTTTTGTAATTTTGGA
1 CTTTTGTAATTTTGGA
36697100 CTTTTGT-ATTTTGGA
1 CTTTTGTAATTTTGGA
36697115 CTTTT
1 CTTTT
36697120 AATTTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.14, C:0.08, G:0.17, T:0.61
Consensus pattern (16 bp):
CTTTTGTAATTTTGGA
Found at i:36698237 original size:201 final size:201
Alignment explanation
Indices: 36697559--36698276 Score: 958
Period size: 200 Copynumber: 3.6 Consensus size: 201
36697549 ACTTGGTCTT
* * ** ** * * *
36697559 CTTCTCAGTGTCTCATCAGGAAGATGACCGCATCACTTGTTTTGATCCACTTCTTTGTGTTTCAT
1 CTTCTCAGTATCTCATCAGAAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
* * * * *
36697624 CCGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGCTAACCACTTTATTGCTTCGA
66 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
* * * *
36697689 CCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTTGAAGATTTGCTCATATCGAGCTTGAGTTT
131 CCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCA---T
* *
36697754 GATTTGGTCTT
193 G--TTGGTATA
** *
36697765 CTTCTCAGTATCTCATCA-AGAAGATGACCGCATCGTTTGTTTCAAT-TCGCTTCTTTGTATCTC
1 CTTCTCAGTATCTCATCAGA-AAGATGACCGCATCACTTGTTTCAATCT-GCTTCTCTGTATCTC
* *
36697828 ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAGGCTAACCATTCTATTGCTTC
64 ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
* ** *
36697893 GACC-AGCTTCTCAGTATCTCATCAGGAAGCT-GGGTTCGAAGATTTGCCCGCATCGAGCGTCAA
129 GACCTA-CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCAT
36697956 GTTGGTATA
193 GTTGGTATA
* * * ** *
36697965 CTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTTTATCTGCTTCTCTGTATCTTAT
1 CTTCTCAGTATCTCATCAGAAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
36698030 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
66 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
*
36698095 CCTACTTCTCAGTATCTTATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCATGTT
131 CCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCATGTT
36698160 GGTATA
196 GGTATA
** * *
36698166 CTTCTCAGTATCTCATCAGAAAGATGATAGCCTCACTTGTTTCAATCTGCATCTCTGTATCTCAT
1 CTTCTCAGTATCTCATCAGAAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
**
36698231 CAGGAAGACGAATTTGGTCCACTTCTCAACATCTCATCAGGAAGCT
66 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCT
36698277 GGGGTTCGAA
Statistics
Matches: 452, Mismatches: 53, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
200 148 0.33
201 140 0.31
202 1 0.00
205 25 0.06
206 138 0.31
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (201 bp):
CTTCTCAGTATCTCATCAGAAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
CCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCATGTT
GGTATA
Found at i:36698296 original size:153 final size:155
Alignment explanation
Indices: 36698098--36698434 Score: 471
Period size: 158 Copynumber: 2.2 Consensus size: 155
36698088 GCTTCGACCT
* * *
36698098 ACTTCTCAGTATCTTATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGT-CATG-TTG
1 ACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGCATGATTG
*
36698161 GTATACTTCTCAGTATCTCATCAGAAAGATGATAGCCTCACTTGTTTCAATCTGCATCTCTGTAT
66 GTATACTTCTCAGTATCTCATCAGAAAGATGACAGCCTCACTTGTTTCAATCTGCATCTCTGTAT
*
36698226 CTCATCAGGAAGACGAATTTGGTCC
131 CTCATCAGAAAGACGAATTTGGTCC
* **
36698251 ACTTCTCAACATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGTTTGAT
1 ACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGT--GCATGA-
* * * * * * * * * *
36698316 TTGGTCTTCTTCTCTGTGTCTCATCAGGAAGATGACCGCGTCATTTGTTTCAATCTGCTTCTTTG
63 TTGGTATACTTCTCAGTATCTCATCAGAAAGATGACAGCCTCACTTGTTTCAATCTGCATCTCTG
36698381 TATCTCATCAGAAAGACGAATTTGGTCC
128 TATCTCATCAGAAAGACGAATTTGGTCC
36698409 ACTTCTCAATATCTCATCAGGAAGCT
1 ACTTCTCAATATCTCATCAGGAAGCT
36698435 AACCATTTTA
Statistics
Matches: 160, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
153 52 0.32
156 2 0.01
158 106 0.66
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (155 bp):
ACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGCATGATTG
GTATACTTCTCAGTATCTCATCAGAAAGATGACAGCCTCACTTGTTTCAATCTGCATCTCTGTAT
CTCATCAGAAAGACGAATTTGGTCC
Found at i:36698351 original size:359 final size:353
Alignment explanation
Indices: 36697899--36698596 Score: 1031
Period size: 359 Copynumber: 2.0 Consensus size: 353
36697889 CTTCGACCAG
** *
36697899 CTTCTCAGTATCTCATCAGGAAGCTGGGTTCGAAGATTTGCCCGCATCGAGCGTCAAGTTGGTAT
1 CTTCTCAACATCTCATCAGGAAGCTGGGTTCGAAGATTTGCCCACATCGAGCGTCAAGTTGGTAT
** *
36697964 ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTTTATCTGCTTCTCTGTATCTTA
66 ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTCTGTATCTCA
* *
36698029 TCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGAAAGACGAATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
* * * *
36698094 ACCTACTTCTCAGTATCTTATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTC-ATG
196 ACCTACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCCTCGA-G
* *
36698158 TTGGTATACTTCTCAGTATCTCATCAGAAAGATGA-TAGCCTCACTTGTTTCAATCTGCATCTCT
260 TTGGTATACTTCTCAGTATCTCATCAGAAAGATGACCA-CCTCACTTGTTTCAATCCGCATCTCT
*
36698222 GTATCTCATCAGGAAGACGAATTTGGTCCA
324 GTATCTCATCACGAAGACGAATTTGGTCCA
* ** *
36698252 CTTCTCAACATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGTTTGATT
1 CTTCTCAACATCTCATCAGGAAGCT-GGGTTCGAAGATTTGCCCACATCGAGC----G-TCAAGT
* * * * * *
36698317 TGGTCTTCTTCTCTGTGTCTCATCAGGAAGATGACCGCGTCATTTGTTTCAATCTGCTTCTTTGT
60 TGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTCTGT
36698382 ATCTCATCAGAAAGACGAATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTAACCATTTTATT
125 ATCTCATCAGAAAGACGAATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTAACCATTTTATT
* *
36698447 GCTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTGAGCC
190 GCTTCGACCTACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCC
* * * *
36698512 TCGAGTTGGTATACTTCTCTGTATCTTATCAGGAAGATGACCACCTCACTTGTTTCAATCCGCTT
255 TCGAGTTGGTATACTTCTCAGTATCTCATCAGAAAGATGACCACCTCACTTGTTTCAATCCGCAT
36698577 CTCTGTATCTCATCACGAAG
320 CTCTGTATCTCATCACGAAG
36698597 CTAACCATTT
Statistics
Matches: 306, Mismatches: 31, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
353 23 0.08
354 25 0.08
358 1 0.00
359 255 0.83
360 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (353 bp):
CTTCTCAACATCTCATCAGGAAGCTGGGTTCGAAGATTTGCCCACATCGAGCGTCAAGTTGGTAT
ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTCTGTATCTCA
TCAGAAAGACGAATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
ACCTACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCCTCGAGT
TGGTATACTTCTCAGTATCTCATCAGAAAGATGACCACCTCACTTGTTTCAATCCGCATCTCTGT
ATCTCATCACGAAGACGAATTTGGTCCA
Found at i:36699115 original size:30 final size:27
Alignment explanation
Indices: 36699076--36699172 Score: 86
Period size: 29 Copynumber: 3.4 Consensus size: 27
36699066 CCCTAAACTA
* *
36699076 TTCATAAATTATATTTATGACCCCAAAAT
1 TTCAAAAATTACATTT-T-ACCCCAAAAT
* *
36699105 TTCAAAAAATTACATTTTAACCTCAAAAC
1 TTC-AAAAATTACATTTT-ACCCCAAAAT
*
36699134 TTCTAAAAATTACCATTTTACCCCAAACT
1 TTC-AAAAATTA-CATTTTACCCCAAAAT
*
36699163 TTCCAAAATT
1 TTCAAAAATT
36699173 CTATTTTTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
28 6 0.11
29 33 0.59
30 17 0.30
ACGTcount: A:0.42, C:0.22, G:0.01, T:0.35
Consensus pattern (27 bp):
TTCAAAAATTACATTTTACCCCAAAAT
Found at i:36699131 original size:29 final size:27
Alignment explanation
Indices: 36699076--36699238 Score: 80
Period size: 29 Copynumber: 5.6 Consensus size: 27
36699066 CCCTAAACTA
* * *
36699076 TTCATAAATTATATTTATGACCCCAAAAT
1 TTCAAAAATTACATTT-T-ACCTCAAAAT
*
36699105 TTCAAAAAATTACATTTTAACCTCAAAAC
1 TTC-AAAAATTACATTTT-ACCTCAAAAT
* *
36699134 TTCTAAAAATTACCATTTTACCCCAAACT
1 TTC-AAAAATTA-CATTTTACCTCAAAAT
* *
36699163 TTCCAAAATT-CTATTTTTAACCTC--GAT
1 TTCAAAAATTAC-A-TTTT-ACCTCAAAAT
*
36699190 TTCACCAAAAATTACCATTTTACCTCCAAACT
1 TT---CAAAAATTA-CATTTTACCT-CAAAAT
* *
36699222 TTCTAAAATTCCATTTT
1 TTCAAAAATTACATTTT
36699239 TGACCCCGAT
Statistics
Matches: 103, Mismatches: 18, Indels: 27
0.70 0.12 0.18
Matches are distributed among these distances:
26 1 0.01
27 4 0.04
28 16 0.16
29 48 0.47
30 29 0.28
31 1 0.01
32 4 0.04
ACGTcount: A:0.38, C:0.23, G:0.01, T:0.37
Consensus pattern (27 bp):
TTCAAAAATTACATTTTACCTCAAAAT
Found at i:36699158 original size:58 final size:55
Alignment explanation
Indices: 36699095--36699421 Score: 242
Period size: 59 Copynumber: 5.6 Consensus size: 55
36699085 TATATTTATG
* *
36699095 ACCCCAAAATTTCAAAAAATTACATTTTAACCTCAAAACTT-CTAAAAATTACCATTTT
1 ACCCCAAACTTTC-AAAAATT-CATTTTAACCTC--AACTTACCAAAAATTACCATTTT
* * *
36699153 ACCCCAAACTTTCCAAAATTCTATTTTTAACCTCGATTTCACCAAAAATTACCATTTT
1 ACCCCAAACTTTCAAAAATTC-A-TTTTAACCTCAACTT-ACCAAAAATTACCATTTT
* * * * * *
36699211 ACCTCCAAACTTTCTAAAATTCCATTTTTGACCCCGATTTCACCAAAAATTATCATTTT
1 ACC-CCAAACTTTCAAAAATT-CA-TTTTAACCTCAACTT-ACCAAAAATTACCATTTT
* * * *
36699270 ACCCCCAAACCTTCCAAAATTCTATTTTTAACCTCGATTTCACCAAAAATTACCATTTT
1 A-CCCCAAACTTTCAAAAATTC-A-TTTTAACCTCAACTT-ACCAAAAATTACCATTTT
* * * ** *
36699329 ACCCCCGAACTTTCCAAAATCCCATTTTTAACCTTGATTTCACCAAAAATTACCATTTT
1 A-CCCCAAACTTTCAAAAAT-TCA-TTTTAACCTCAACTT-ACCAAAAATTACCATTTT
* *
36699388 ACCCCTAAACTTTCTAAAATCCCATTTTTAACCT
1 ACCCC-AAACTTTCAAAAAT-TCA-TTTTAACCT
36699422 TAAATTTTCC
Statistics
Matches: 239, Mismatches: 20, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
56 4 0.02
57 7 0.03
58 46 0.19
59 178 0.74
60 4 0.02
ACGTcount: A:0.35, C:0.28, G:0.02, T:0.35
Consensus pattern (55 bp):
ACCCCAAACTTTCAAAAATTCATTTTAACCTCAACTTACCAAAAATTACCATTTT
Found at i:36699211 original size:30 final size:30
Alignment explanation
Indices: 36699177--36699388 Score: 117
Period size: 30 Copynumber: 7.2 Consensus size: 30
36699167 AAAATTCTAT
36699177 TTTTAACCTCGATTTCACCAAAAATTACCA
1 TTTTAACCTCGATTTCACCAAAAATTACCA
* *
36699207 TTTT-ACCTCCAAACTTT---CTAAAATT-CCA
1 TTTTAACCT-C-GA-TTTCACCAAAAATTACCA
* * *
36699235 TTTTTGACCCCGATTTCACCAAAAATTATCA
1 -TTTTAACCTCGATTTCACCAAAAATTACCA
* * * * *
36699266 TTTTACCCCCAAACCTT--CC-AAAATT-CTA
1 TTTTAACCTC-GA-TTTCACCAAAAATTACCA
36699294 TTTTTAACCTCGATTTCACCAAAAATTACCA
1 -TTTTAACCTCGATTTCACCAAAAATTACCA
* * *
36699325 TTTTACCCCCGAACTTT--CC-AAAA-TCCCA
1 TTTTAACCTCG-A-TTTCACCAAAAATTACCA
*
36699353 TTTTTAACCTTGATTTCACCAAAAATTACCA
1 -TTTTAACCTCGATTTCACCAAAAATTACCA
36699384 TTTTA
1 TTTTA
36699389 CCCCTAAACT
Statistics
Matches: 135, Mismatches: 24, Indels: 46
0.66 0.12 0.22
Matches are distributed among these distances:
27 8 0.06
28 11 0.08
29 46 0.34
30 51 0.38
31 11 0.08
32 8 0.06
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.36
Consensus pattern (30 bp):
TTTTAACCTCGATTTCACCAAAAATTACCA
Found at i:36699239 original size:29 final size:29
Alignment explanation
Indices: 36699110--36699239 Score: 85
Period size: 29 Copynumber: 4.5 Consensus size: 29
36699100 AAAATTTCAA
* * *
36699110 AAAATTACATTTTAACCTCAAAAC-TTCT
1 AAAATTCCATTTTTACCTCCAAACTTTCT
*
36699138 AAAAATTACCA-TTTTACC-CCAAACTTTCC
1 -AAAATT-CCATTTTTACCTCCAAACTTTCT
* * *
36699167 AAAATTCTATTTTTAACCT-C-GA-TTTCACCA
1 AAAATTCCATTTTT-ACCTCCAAACTTT---CT
36699197 AAAATTACCA-TTTTACCTCCAAACTTTCT
1 AAAATT-CCATTTTTACCTCCAAACTTTCT
36699226 AAAATTCCATTTTT
1 AAAATTCCATTTTT
36699240 GACCCCGATT
Statistics
Matches: 78, Mismatches: 10, Indels: 26
0.68 0.09 0.23
Matches are distributed among these distances:
27 5 0.06
28 19 0.24
29 34 0.44
30 14 0.18
31 3 0.04
32 3 0.04
ACGTcount: A:0.37, C:0.25, G:0.01, T:0.38
Consensus pattern (29 bp):
AAAATTCCATTTTTACCTCCAAACTTTCT
Found at i:36699258 original size:29 final size:30
Alignment explanation
Indices: 36699138--36699392 Score: 116
Period size: 29 Copynumber: 8.7 Consensus size: 30
36699128 CAAAACTTCT
*
36699138 AAAAATTACCA-TTTTACCCCAAACTTT--CC
1 AAAAATTACCATTTTTACCCC-GA-TTTCACC
* *
36699167 -AAAATT-CTATTTTTAACCTCGATTTCACC
1 AAAAATTACCATTTTT-ACCCCGATTTCACC
*
36699196 AAAAATTACCA-TTTTACCTCCAAACTTT---C
1 AAAAATTACCATTTTTACC-CC-GA-TTTCACC
*
36699225 TAAAATT-CCATTTTTGACCCCGATTTCACC
1 AAAAATTACCATTTTT-ACCCCGATTTCACC
* * *** *
36699255 AAAAATTATCA-TTTTACCCCCAAACCTTCC
1 AAAAATTACCATTTTTACCCCGATTTC-ACC
* *
36699285 -AAAATT-CTATTTTTAACCTCGATTTCACC
1 AAAAATTACCATTTTT-ACCCCGATTTCACC
36699314 AAAAATTACCA-TTTTACCCCCGAACTTT--CC
1 AAAAATTACCATTTTTA-CCCCG-A-TTTCACC
* **
36699344 -AAAA-TCCCATTTTTAACCTTGATTTCACC
1 AAAAATTACCATTTTT-ACCCCGATTTCACC
36699373 AAAAATTACCA-TTTTACCCC
1 AAAAATTACCATTTTTACCCC
36699393 TAAACTTTCT
Statistics
Matches: 166, Mismatches: 31, Indels: 58
0.65 0.12 0.23
Matches are distributed among these distances:
27 11 0.07
28 21 0.13
29 58 0.35
30 58 0.35
31 12 0.07
32 6 0.04
ACGTcount: A:0.34, C:0.29, G:0.02, T:0.35
Consensus pattern (30 bp):
AAAAATTACCATTTTTACCCCGATTTCACC
Found at i:36699425 original size:29 final size:29
Alignment explanation
Indices: 36699336--36699430 Score: 70
Period size: 29 Copynumber: 3.2 Consensus size: 29
36699326 TTTACCCCCG
*
36699336 AACTTTCCAAAATCCCATTTTTAACCTT-
1 AACTTTCAAAAATCCCATTTTTAACCTTA
* * * *
36699364 GA-TTTCACCAAAAATTACCA-TTTTACCCCTA
1 AACTTT---CAAAAA-TCCCATTTTTAACCTTA
*
36699395 AACTTTCTAAAATCCCATTTTTAACCTTA
1 AACTTTCAAAAATCCCATTTTTAACCTTA
*
36699424 AATTTTC
1 AACTTTC
36699431 CCAAAATTAT
Statistics
Matches: 49, Mismatches: 11, Indels: 13
0.67 0.15 0.18
Matches are distributed among these distances:
27 3 0.06
28 5 0.10
29 20 0.41
30 13 0.27
31 5 0.10
32 3 0.06
ACGTcount: A:0.34, C:0.26, G:0.01, T:0.39
Consensus pattern (29 bp):
AACTTTCAAAAATCCCATTTTTAACCTTA
Found at i:36699439 original size:59 final size:58
Alignment explanation
Indices: 36699138--36699421 Score: 424
Period size: 59 Copynumber: 4.8 Consensus size: 58
36699128 CAAAACTTCT
*
36699138 AAAAATTACCATTTTACCCCAAACTTTCCAAAATTCTATTTTTAACCTCGATTTCACC
1 AAAAATTACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACC
* * *
36699196 AAAAATTACCATTTTACCTCCAAACTTTCTAAAATTCCATTTTTGACCCCGATTTCACC
1 AAAAATTACCATTTTACC-CCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACC
* * *
36699255 AAAAATTATCATTTTACCCCCAAACCTTCCAAAATTCTATTTTTAACCTCGATTTCACC
1 AAAAATTACCATTTTA-CCCCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACC
* * *
36699314 AAAAATTACCATTTTACCCCCGAACTTTCCAAAATCCCATTTTTAACCTTGATTTCACC
1 AAAAATTACCATTTTA-CCCCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACC
* *
36699373 AAAAATTACCATTTTACCCCTAAACTTTCTAAAATCCCATTTTTAACCT
1 AAAAATTACCATTTTACCCC-AAACTTTCCAAAATTCCATTTTTAACCT
36699422 TAAATTTTCC
Statistics
Matches: 205, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
58 22 0.11
59 181 0.88
60 2 0.01
ACGTcount: A:0.34, C:0.29, G:0.02, T:0.36
Consensus pattern (58 bp):
AAAAATTACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACC
Found at i:36700152 original size:153 final size:153
Alignment explanation
Indices: 36699948--36700232 Score: 464
Period size: 153 Copynumber: 1.9 Consensus size: 153
36699938 TTCTCAAAAC
* *
36699948 ATATATCTATATTACAAATAATTTTAAAGCGACGCAATGTCCTGTCGTGTGAAAACTTCGA-AAG
1 ATATATCTATATCACAAATAATTTTAAAACGACGCAATGTCCTGTCGTGTGAAAACTTCGAGAA-
* *
36700012 ATCGCGCTTTAACGTGTTAAGTGTGATTTTCGTAATTCATGCGAATCAAATATCCTCTTCAAAAG
65 ATCGCACTTTAACGTGTTAAGTGTGATTTTCGTAATTCATGCAAATCAAATATCCTCTTCAAAAG
36700077 TTTCCGAAACATCCTTCAATTTTT
130 TTTCCGAAACATCCTTCAATTTTT
* * *
36700101 ATATATCTATATCACAAGTAATTTTAAAACGAGGCAATGTCCTTTCGTGTGAAAACTTCGAGAAA
1 ATATATCTATATCACAAATAATTTTAAAACGACGCAATGTCCTGTCGTGTGAAAACTTCGAGAAA
** *
36700166 TCGCACTTTAACGTGTTAAGTGTGATTTTCGTAATTCATGCAAATCGGATATCCTTTTCAAAAGT
66 TCGCACTTTAACGTGTTAAGTGTGATTTTCGTAATTCATGCAAATCAAATATCCTCTTCAAAAGT
36700231 TT
131 TT
36700233 TCAAAACACT
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
153 119 0.98
154 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35
Consensus pattern (153 bp):
ATATATCTATATCACAAATAATTTTAAAACGACGCAATGTCCTGTCGTGTGAAAACTTCGAGAAA
TCGCACTTTAACGTGTTAAGTGTGATTTTCGTAATTCATGCAAATCAAATATCCTCTTCAAAAGT
TTCCGAAACATCCTTCAATTTTT
Found at i:36700525 original size:21 final size:21
Alignment explanation
Indices: 36700501--36700544 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
36700491 AGAATTTATT
36700501 TTGTTATTTGAAGTGAGACTA
1 TTGTTATTTGAAGTGAGACTA
* ***
36700522 TTGTTTTTTTTTGTGAGACTA
1 TTGTTATTTGAAGTGAGACTA
36700543 TT
1 TT
36700545 TGTTGGGAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.05, G:0.20, T:0.55
Consensus pattern (21 bp):
TTGTTATTTGAAGTGAGACTA
Found at i:36707215 original size:58 final size:59
Alignment explanation
Indices: 36707122--36707234 Score: 149
Period size: 58 Copynumber: 1.9 Consensus size: 59
36707112 AAAAAGATGC
* * *
36707122 AATTTGGAGCTAAAAATGAGACTTTGGATGACCGGGGGTAAAATGGT-ATTTTTGGGAA
1 AATTTGGAGCTAAAAATGAGACTTTAGATCACCGGGGGTAAAAGGGTAATTTTTGGGAA
* * *
36707180 AATTTGGAGTTAAAAATGATATTTTAGA-CATCCGGGGGTAAAAGGGTAATTTTTG
1 AATTTGGAGCTAAAAATGAGACTTTAGATCA-CCGGGGGTAAAAGGGTAATTTTTG
36707235 AAGTTTCGAG
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 1 0.02
58 39 0.83
59 7 0.15
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (59 bp):
AATTTGGAGCTAAAAATGAGACTTTAGATCACCGGGGGTAAAAGGGTAATTTTTGGGAA
Found at i:36707251 original size:29 final size:28
Alignment explanation
Indices: 36707227--36707495 Score: 197
Period size: 29 Copynumber: 9.2 Consensus size: 28
36707217 GTAAAAGGGT
36707227 AATTTTTGAAGTTTCGAGGTCAAAATGG
1 AATTTTTGAAGTTTCGAGGTCAAAATGG
* *
36707255 AATTGTTGGAAGTTTCGAGGTTAAAATGG
1 AATT-TTTGAAGTTTCGAGGTCAAAATGG
* * *
36707284 AATTTTTGGAGATTTCGAGGTTAAAATGT
1 AATTTTTGAAG-TTTCGAGGTCAAAATGG
* * *
36707313 ATTTTTTGAAAGTTT-TAGGGTCAAAAATAG
1 AATTTTTG-AAGTTTCGA-GGTC-AAAATGG
* * * *
36707343 AATTTTTGGAAATTT-TAGGGTTAAAATGT
1 AATTTTT-GAAGTTTCGA-GGTCAAAATGG
36707372 AATTTTTGGAAGTTTCGAGGTCAAAATGG
1 AATTTTT-GAAGTTTCGAGGTCAAAATGG
* * * *
36707401 AATATTTGAAAATCTTAG-GGTTAAAATGG
1 AATTTTTG-AAGT-TTCGAGGTCAAAATGG
* * *
36707430 AATTTTTGGAAATTTTCGA-GTTAAAATGT
1 AATTTTT-G-AAGTTTCGAGGTCAAAATGG
36707459 AATTTTTGGAAGTTTC-AGAGTCAAAAATGG
1 AATTTTT-GAAGTTTCGAG-GTC-AAAATGG
36707489 AATTTTT
1 AATTTTT
36707496 CAAATTTTGG
Statistics
Matches: 196, Mismatches: 31, Indels: 26
0.77 0.12 0.10
Matches are distributed among these distances:
27 1 0.01
28 17 0.09
29 131 0.67
30 46 0.23
31 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.39
Consensus pattern (28 bp):
AATTTTTGAAGTTTCGAGGTCAAAATGG
Found at i:36707300 original size:58 final size:58
Alignment explanation
Indices: 36707218--36707495 Score: 253
Period size: 58 Copynumber: 4.8 Consensus size: 58
36707208 CATCCGGGGG
* * * *
36707218 TAAAAGGGTAATTTTT-GAAGTTTCGAGGTCAAAATGGAATTGTTGGAAGTTTCGAGGT
1 TAAAATGG-AATTTTTGGAAATTTCGAGGTTAAAATGGAATTTTTGGAAGTTTCGAGGT
* * * * *
36707276 TAAAATGGAATTTTTGGAGATTTCGAGGTTAAAATGTATTTTTTGAAAGTTT-TAGGGT
1 TAAAATGGAATTTTTGGAAATTTCGAGGTTAAAATGGAATTTTTGGAAGTTTCGA-GGT
* * * *
36707334 CAAAAATAGAATTTTTGGAAATTT-TAGGGTTAAAATGTAATTTTTGGAAGTTTCGAGGT
1 -TAAAATGGAATTTTTGGAAATTTCGA-GGTTAAAATGGAATTTTTGGAAGTTTCGAGGT
* * * * *
36707393 CAAAATGGAATATTTGAAAATCTTAG-GGTTAAAATGGAATTTTTGGAAATTTTCGA-GT
1 TAAAATGGAATTTTTGGAAAT-TTCGAGGTTAAAATGGAATTTTTGG-AAGTTTCGAGGT
* * *
36707451 TAAAATGTAATTTTTGGAAGTTTC-AGAGTCAAAAATGGAATTTTT
1 TAAAATGGAATTTTTGGAAATTTCGAG-GT-TAAAATGGAATTTTT
36707496 CAAATTTTGG
Statistics
Matches: 179, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
57 11 0.06
58 96 0.54
59 71 0.40
60 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (58 bp):
TAAAATGGAATTTTTGGAAATTTCGAGGTTAAAATGGAATTTTTGGAAGTTTCGAGGT
Found at i:36707365 original size:59 final size:59
Alignment explanation
Indices: 36707271--36707469 Score: 201
Period size: 59 Copynumber: 3.4 Consensus size: 59
36707261 TGGAAGTTTC
* * *
36707271 GAGGTTAAAATGGAATTTTTGGAGA-TTTCGAGGTTAAAATGTATTTTTTGAAAGTTTTA
1 GAGGTCAAAATGGAATTTTTGGAAATTTTAG-GGTTAAAATGTATTTTTTGAAAGTTTTA
* * * *
36707330 G-GGTCAAAAATAGAATTTTTGGAAATTTTAGGGTTAAAATGTAATTTTTGGAAG-TTTC
1 GAGGTC-AAAATGGAATTTTTGGAAATTTTAGGGTTAAAATGTATTTTTTGAAAGTTTTA
* * * * * *
36707388 GAGGTCAAAATGGAATATTTGAAAATCTTAGGGTTAAAATGGAATTTTTGGAAA-TTTTC
1 GAGGTCAAAATGGAATTTTTGGAAATTTTAGGGTTAAAAT-GTATTTTTTGAAAGTTTTA
* *
36707447 GA-GTTAAAATGTAATTTTTGGAA
1 GAGGTCAAAATGGAATTTTTGGAA
36707470 GTTTCAGAGT
Statistics
Matches: 116, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
58 54 0.47
59 58 0.50
60 4 0.03
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.39
Consensus pattern (59 bp):
GAGGTCAAAATGGAATTTTTGGAAATTTTAGGGTTAAAATGTATTTTTTGAAAGTTTTA
Found at i:36707423 original size:146 final size:145
Alignment explanation
Indices: 36707215--36707524 Score: 421
Period size: 146 Copynumber: 2.1 Consensus size: 145
36707205 AGACATCCGG
** * * *
36707215 GGGTAAAAGGGTAATTTTTGAAGTTTCGAGGTCAAAATGGAATTGTTGGAAGTTTCGAGGTTAAA
1 GGGTAAAAATGTAATTTTTGAAGTTTCGAGGTCAAAATGGAATTGTTGAAAATTTAGAGGTTAAA
* * * *
36707280 ATGGAATTTTTGGAGA-TTTCGAGGTTAAAATGTATTTTTTGAAAGTTTTAGGGTCAAAAATAGA
66 ATGGAATTTTTGGAAATTTTCGA-GTTAAAATGTAATTTTTGAAAGTTTCAGAGTCAAAAATAGA
*
36707344 ATTTTTGGAAATTTT-A
130 ATTTTT-CAAATTTTGA
*
36707360 GGGTTAAAATGTAATTTTTGGAAGTTTCGAGGTCAAAATGGAATAT-TTGAAAATCTTAG-GGTT
1 GGGTAAAAATGTAATTTTT-GAAGTTTCGAGGTCAAAATGGAAT-TGTTGAAAAT-TTAGAGGTT
* *
36707423 AAAATGGAATTTTTGGAAATTTTCGAGTTAAAATGTAATTTTTGGAAGTTTCAGAGTCAAAAATG
63 AAAATGGAATTTTTGGAAATTTTCGAGTTAAAATGTAATTTTTGAAAGTTTCAGAGTCAAAAATA
*
36707488 GAATTTTTCAAATTTTGG
128 GAATTTTTCAAATTTTGA
36707506 GGGTAAAAATGTAATTTTT
1 GGGTAAAAATGTAATTTTT
36707525 AGACAATTTA
Statistics
Matches: 145, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
145 23 0.16
146 112 0.77
147 10 0.07
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (145 bp):
GGGTAAAAATGTAATTTTTGAAGTTTCGAGGTCAAAATGGAATTGTTGAAAATTTAGAGGTTAAA
ATGGAATTTTTGGAAATTTTCGAGTTAAAATGTAATTTTTGAAAGTTTCAGAGTCAAAAATAGAA
TTTTTCAAATTTTGA
Found at i:36709333 original size:34 final size:35
Alignment explanation
Indices: 36709282--36709347 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 35
36709272 GTCTTCTGTT
*
36709282 TTGGGTTATTTTGGGCCCGTCTAATTGGGCTTGTG
1 TTGGGTTATATTGGGCCCGTCTAATTGGGCTTGTG
* *
36709317 TTGGGTTA-ATTGGGCCCTTGTAATTGGGCTT
1 TTGGGTTATATTGGGCCCGTCTAATTGGGCTT
36709348 TGGTGTATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 20 0.71
35 8 0.29
ACGTcount: A:0.11, C:0.14, G:0.33, T:0.42
Consensus pattern (35 bp):
TTGGGTTATATTGGGCCCGTCTAATTGGGCTTGTG
Found at i:36709416 original size:15 final size:16
Alignment explanation
Indices: 36709388--36709423 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
36709378 CCCAATTGTG
36709388 CTTTTGTAATTTTGGA
1 CTTTTGTAATTTTGGA
36709404 CTTTTGT-ATTTTGGA
1 CTTTTGTAATTTTGGA
36709419 CTTTT
1 CTTTT
36709424 AATTTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.14, C:0.08, G:0.17, T:0.61
Consensus pattern (16 bp):
CTTTTGTAATTTTGGA
Found at i:36710382 original size:199 final size:200
Alignment explanation
Indices: 36709863--36710579 Score: 956
Period size: 206 Copynumber: 3.6 Consensus size: 200
36709853 ACTTGGTCTT
* ** ** * * *
36709863 CTTCTCAGTGTCTCATCAGGAAGATGACCGCATCACTTGTTTTGATCCACTTCTTTGTGTTTCAT
1 CTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
* * * *
36709928 CCGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGCTAACCACTTTATTGCTTCGA
66 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCA-TTTATTGCTTCGA
* * *
36709993 CCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTTGAAGATTTGCTCATATCGAGCTTGAGTTT
130 CCAGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGC----G-TC
* * * *
36710058 GATTTGGTCTT
190 AAGTTGGTATA
* ** *
36710069 CTTCTCAGTATCTCATCAAGAAGATGACCGCATCGTTTGTTTCAAT-TCGCTTCTTTGTATCTCA
1 CTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCT-GCTTCTCTGTATCTCA
*
36710133 TCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAGGCTAACCATTCTATTGCTTCG
65 TCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATT-TATTGCTTCG
* **
36710198 ACCAGCTTCTCAGTATCTCATCAGGAAGCT-GGGTTCGAAGATTTGCCCGCATCGAGCGTCAAGT
129 ACCAGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCAAGT
36710262 TGGTATA
194 TGGTATA
* * * *
36710269 CTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTT-TATCTGCTTCTCTGTATCTTAT
1 CTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
36710333 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
66 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCA-TTTATTGCTTCGA
* *
36710398 CCTA-CTTCTCAGTATCTTATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCATGT
130 CC-AGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCAAGT
36710462 TGGTATA
194 TGGTATA
* ** * *
36710469 CTTCTCAGTATCTCATCAGAAAGATGATAGCCTCACTTGTTTCAATCTGCATCTCTGTATCTCAT
1 CTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
**
36710534 CAGGAAGACGAATTTGGTCCACTTCTCAACATCTCATCAGGAAGCT
66 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCT
36710580 GGGGTTCGAA
Statistics
Matches: 456, Mismatches: 48, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
199 104 0.23
200 124 0.27
201 64 0.14
205 25 0.05
206 139 0.30
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (200 bp):
CTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCTGTATCTCAT
CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTATTGCTTCGAC
CAGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCAAGTTG
GTATA
Found at i:36710599 original size:153 final size:155
Alignment explanation
Indices: 36710401--36710737 Score: 471
Period size: 158 Copynumber: 2.2 Consensus size: 155
36710391 GCTTCGACCT
* * *
36710401 ACTTCTCAGTATCTTATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGT-CATG-TTG
1 ACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGCATGATTG
*
36710464 GTATACTTCTCAGTATCTCATCAGAAAGATGATAGCCTCACTTGTTTCAATCTGCATCTCTGTAT
66 GTATACTTCTCAGTATCTCATCAGAAAGATGACAGCCTCACTTGTTTCAATCTGCATCTCTGTAT
*
36710529 CTCATCAGGAAGACGAATTTGGTCC
131 CTCATCAGAAAGACGAATTTGGTCC
* **
36710554 ACTTCTCAACATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGTTTGAT
1 ACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGT--GCATGA-
* * * * * * * * * *
36710619 TTGGTCTTCTTCTCTGTGTCTCATCAGGAAGATGACCGCGTCATTTGTTTCAATCTGCTTCTTTG
63 TTGGTATACTTCTCAGTATCTCATCAGAAAGATGACAGCCTCACTTGTTTCAATCTGCATCTCTG
36710684 TATCTCATCAGAAAGACGAATTTGGTCC
128 TATCTCATCAGAAAGACGAATTTGGTCC
36710712 ACTTCTCAATATCTCATCAGGAAGCT
1 ACTTCTCAATATCTCATCAGGAAGCT
36710738 AACCATTTTA
Statistics
Matches: 160, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
153 52 0.32
156 2 0.01
158 106 0.66
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (155 bp):
ACTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGCATGATTG
GTATACTTCTCAGTATCTCATCAGAAAGATGACAGCCTCACTTGTTTCAATCTGCATCTCTGTAT
CTCATCAGAAAGACGAATTTGGTCC
Done.