Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 25 of 126
Found at i:8069708 original size:56 final size:57
Alignment explanation
Indices: 8069574--8069713 Score: 171
Period size: 56 Copynumber: 2.5 Consensus size: 57
8069564 TTTACCCTCG
* *
8069574 AACTTCCAAAAATT-CCATTTTTGCCCCCGAACTCCTAAAATTCCATTTTTGACCCTAA
1 AACTTCCAAAAATTACCA-TTTT-CCCCCAAACTCCTAAAATTCCATTTTTAACCCTAA
*
8069632 AACTTCCAAAAATTA-TATTTTCCCCCAAACTCCTAAAATTCCATTTTTAACCC-AGA
1 AACTTCCAAAAATTACCATTTTCCCCCAAACTCCTAAAATTCCATTTTTAACCCTA-A
** *
8069688 AAC-TCCTGAAATTACCATTTTACCCC
1 AACTTCCAAAAATTACCATTTTCCCCC
8069714 GAAATGTCCA
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
55 10 0.14
56 43 0.60
57 4 0.06
58 15 0.21
ACGTcount: A:0.34, C:0.31, G:0.04, T:0.32
Consensus pattern (57 bp):
AACTTCCAAAAATTACCATTTTCCCCCAAACTCCTAAAATTCCATTTTTAACCCTAA
Found at i:8069709 original size:29 final size:28
Alignment explanation
Indices: 8069582--8069717 Score: 104
Period size: 28 Copynumber: 4.8 Consensus size: 28
8069572 CGAACTTCCA
* *
8069582 AAAATTCCATTTTTGCCCCCG-AACTCCT
1 AAAATTCCATTTTT-ACCCAGAAACTCCT
*
8069610 AAAATTCCATTTTTGACCCTA-AAACTTCCA
1 AAAATTCCATTTTT-ACCC-AGAAAC-TCCT
**
8069640 AAAATT--ATATTTT-CCCCCAAACTCCT
1 AAAATTCCAT-TTTTACCCAGAAACTCCT
8069666 AAAATTCCATTTTTAACCCAGAAACTCCT
1 AAAATTCCATTTTT-ACCCAGAAACTCCT
* *
8069695 GAAATTACCA-TTTTACCCCGAAA
1 AAAATT-CCATTTTTACCCAGAAA
8069718 TGTCCAAAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 20
0.75 0.08 0.17
Matches are distributed among these distances:
26 9 0.10
27 11 0.12
28 30 0.34
29 27 0.30
30 12 0.13
ACGTcount: A:0.35, C:0.29, G:0.04, T:0.32
Consensus pattern (28 bp):
AAAATTCCATTTTTACCCAGAAACTCCT
Found at i:8069864 original size:143 final size:145
Alignment explanation
Indices: 8069696--8070001 Score: 465
Period size: 143 Copynumber: 2.1 Consensus size: 145
8069686 GAAACTCCTG
8069696 AAATTACCATTTTACCCCGAAATGTCCAAAAATCCCGTTTTTGATCCCGATTTTTCTAAAAATTA
1 AAATTACCATTTTACCCCGAAATGTCCAAAAATCCCGTTTTTGATCCCGATTTTTCTAAAAATTA
* * * * * * **
8069761 TCGTTTTACCCTCAAGTGTCTAAAATGTCATTTTTAACCCTAAATTTTTCCAAAATTACCA-TTT
66 CCATGTTACCCTAAAATATCTAAAATGTCATTTTTAACCAGAAATTTTTCCAAAATTACCATTTT
*
8069825 -CCCTCGAAAGTCTA
131 GCCCTCGAAAGTCCA
* *
8069839 AAATTACCATTTTACCCCTG-GATGTCCAAAAATCCCGTTTTTGATCTCGATTTTTCTAAAAATT
1 AAATTACCATTTTACCCC-GAAATGTCCAAAAATCCCGTTTTTGATCCCGATTTTTCTAAAAATT
*
8069903 ACCATGTTATCCTAAAATATCTAAAATGTCATTTTTAACCAGAAATTTTTCCAAAATTACCATTT
65 ACCATGTTACCCTAAAATATCTAAAATGTCATTTTTAACCAGAAATTTTTCCAAAATTACCATTT
*
8069968 TGTCCTCGAAAGTCCA
130 TGCCCTCGAAAGTCCA
8069984 AAATTACCATTTTACCCC
1 AAATTACCATTTTACCCC
8070002 CAGGTATCCT
Statistics
Matches: 147, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
143 113 0.77
144 4 0.03
145 30 0.20
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (145 bp):
AAATTACCATTTTACCCCGAAATGTCCAAAAATCCCGTTTTTGATCCCGATTTTTCTAAAAATTA
CCATGTTACCCTAAAATATCTAAAATGTCATTTTTAACCAGAAATTTTTCCAAAATTACCATTTT
GCCCTCGAAAGTCCA
Found at i:8074879 original size:6 final size:6
Alignment explanation
Indices: 8074864--8074913 Score: 68
Period size: 6 Copynumber: 8.5 Consensus size: 6
8074854 GTGTTATTAC
*
8074864 AAAA-A AAAACA AAAACA AAAACA AAAAC- AAAACA AAAAAA CAAAACA
1 AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA -AAAACA
8074911 AAA
1 AAA
8074914 TAAAGGGGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
5 9 0.22
6 26 0.65
7 5 0.12
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACA
Found at i:8074885 original size:12 final size:12
Alignment explanation
Indices: 8074864--8074913 Score: 68
Period size: 11 Copynumber: 4.2 Consensus size: 12
8074854 GTGTTATTAC
8074864 AAAA-AAAAACA
1 AAAACAAAAACA
8074875 AAAACAAAAACA
1 AAAACAAAAACA
8074887 AAAAC-AAAACA
1 AAAACAAAAACA
*
8074898 AAAAAACAAAACA
1 AAAACA-AAAACA
8074911 AAA
1 AAA
8074914 TAAAGGGGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
11 14 0.40
12 12 0.34
13 9 0.26
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAACAAAAACA
Found at i:8074909 original size:13 final size:13
Alignment explanation
Indices: 8074874--8074913 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
8074864 AAAAAAAAAC
*
8074874 AAAAACAAAA-AC
1 AAAAACAAAACAA
8074886 AAAAACAAAACAA
1 AAAAACAAAACAA
8074899 AAAAACAAAACAA
1 AAAAACAAAACAA
8074912 AA
1 AA
8074914 TAAAGGGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAACAAAACAA
Found at i:8075546 original size:63 final size:64
Alignment explanation
Indices: 8075445--8075608 Score: 235
Period size: 63 Copynumber: 2.5 Consensus size: 64
8075435 CCAATTTTCT
*
8075445 TATTATTTTTA-TTTATTTATTTATTTATTATTATTTTTATGAACATAAATAAAT-A-TAAAATA
1 TATTAATTTTATTTTA-TTATTTATTTATTATTA-TTTTATGAACATAAATAAATAAGTAAAATA
8075507 A
64 A
*
8075508 TATTAATTTTATTTTATTATTTATTTATTTATTATTTTATGAATATAAATAAATAAATGTAAAAT
1 TATTAATTTTATTTTATTATTTATTTA-TTATTATTTTATGAACATAAATAAAT-AA-GTAAAAT
8075573 AA
63 AA
*
8075575 TATTAATTTTGTTTTATTATTTATTTATTATTAT
1 TATTAATTTTATTTTATTATTTATTTATTATTAT
8075609 AAATAAATAA
Statistics
Matches: 92, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
63 40 0.43
64 10 0.11
65 1 0.01
66 7 0.08
67 34 0.37
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (64 bp):
TATTAATTTTATTTTATTATTTATTTATTATTATTTTATGAACATAAATAAATAAGTAAAATAA
Found at i:8075565 original size:67 final size:65
Alignment explanation
Indices: 8075445--8075629 Score: 238
Period size: 67 Copynumber: 2.9 Consensus size: 65
8075435 CCAATTTTCT
* *
8075445 TATTATTTTTA-TTTATTTATTTATTTATTATTATTTT-T-ATGA-ACATAAATAAATATAAAAT
1 TATTAATTTTATTTTA-TTATTTATTTATTATTATTTTATAAT-ATAAATAAATAAATATAAAAT
8075506 AA
64 AA
*
8075508 TATTAATTTTATTTTATTATTTATTTATTTATTATTTTATGAATATAAATAAATAAATGTAAAAT
1 TATTAATTTTATTTTATTATTTATTTA-TTATTATTTTAT-AATATAAATAAATAAATATAAAAT
8075573 AA
64 AA
* **
8075575 TATTAATTTTGTTTTATTATTTATTTATTATTA-TAAATAA-ATAAATAAATAAATA
1 TATTAATTTTATTTTATTATTTATTTATTATTATTTTATAATATAAATAAATAAATA
8075630 ACAAACCAAA
Statistics
Matches: 109, Mismatches: 7, Indels: 12
0.85 0.05 0.09
Matches are distributed among these distances:
63 35 0.32
64 16 0.15
65 4 0.04
66 7 0.06
67 47 0.43
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (65 bp):
TATTAATTTTATTTTATTATTTATTTATTATTATTTTATAATATAAATAAATAAATATAAAATAA
Found at i:8077260 original size:13 final size:12
Alignment explanation
Indices: 8077216--8077263 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
8077206 AAAAGAAGAG
*
8077216 AAAGAAAAAAAGA
1 AAAGAAAAACA-A
8077229 AAAGCAAAAACAA
1 AAAG-AAAAACAA
*
8077242 GAAGAAAAACAA
1 AAAGAAAAACAA
8077254 AATAGAAAAA
1 AA-AGAAAAA
8077264 GGGAGAGGTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 9 0.30
13 15 0.50
14 6 0.20
ACGTcount: A:0.79, C:0.06, G:0.12, T:0.02
Consensus pattern (12 bp):
AAAGAAAAACAA
Found at i:8077264 original size:32 final size:31
Alignment explanation
Indices: 8077203--8077262 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 31
8077193 AGATACTATG
8077203 AAAAAAAGAAGAGAAAGAAAAAAAGAAAAGC
1 AAAAAAAGAAGAGAAAGAAAAAAAGAAAAGC
*
8077234 AAAAACAAGAAGA-AAA-ACAAAATAGAAAA
1 AAAAA-AAGAAGAGAAAGA-AAAAAAGAAAA
8077263 AGGGAGAGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 1 0.04
31 18 0.69
32 7 0.27
ACGTcount: A:0.78, C:0.05, G:0.15, T:0.02
Consensus pattern (31 bp):
AAAAAAAGAAGAGAAAGAAAAAAAGAAAAGC
Found at i:8077493 original size:16 final size:16
Alignment explanation
Indices: 8077472--8077505 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
8077462 CTCAGAATGG
8077472 TCTTCGCTAAGTTTGC
1 TCTTCGCTAAGTTTGC
8077488 TCTTCGCTAAGTTTGC
1 TCTTCGCTAAGTTTGC
8077504 TC
1 TC
8077506 ATTAAAGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.26, G:0.18, T:0.44
Consensus pattern (16 bp):
TCTTCGCTAAGTTTGC
Found at i:8078095 original size:97 final size:98
Alignment explanation
Indices: 8077827--8078175 Score: 574
Period size: 98 Copynumber: 3.5 Consensus size: 98
8077817 ATTCGACATC
* * *
8077827 CTTTGACCAATATGGGTCACTTTTTTTTCATGCGAGCTTTGTCTCAAATAAAATTCATCTACCTA
1 CTTTGACCAATATGGGTCAC--TTTTTTCATGCGAGCTTTGCCTCCAATAAAATTCATCCACCTA
*
8077892 ATCCTATTATTTGCTCACTTTGTGTTTGGCATATT
64 ATCCTATTCTTTGCTCACTTTGTGTTTGGCATATT
8077927 CTTTGACCAATATGGGTCACTTTTTTCATGCGAGCTTTGCCTCCAATAAAATTCATCCACCTAAT
1 CTTTGACCAATATGGGTCACTTTTTTCATGCGAGCTTTGCCTCCAATAAAATTCATCCACCTAAT
8077992 CCTATTCTTTGCTCACTTTGTGTTTGGCATATT
66 CCTATTCTTTGCTCACTTTGTGTTTGGCATATT
*
8078025 CTTTGATCAATATGGGTCAC-TTTTTCATGCGAGCTTTGCCTCCAATAAAATTCATCCACCTAAT
1 CTTTGACCAATATGGGTCACTTTTTTCATGCGAGCTTTGCCTCCAATAAAATTCATCCACCTAAT
* *
8078089 CCTATTCTTTGCTCACTTTGCGTCTGGCATATT
66 CCTATTCTTTGCTCACTTTGTGTTTGGCATATT
* * *
8078122 CTTTGACCAATATGAGTCATTTTTATTCATGTGAGCTTTGCCTCCAATAAAATT
1 CTTTGACCAATATGGGTCACTTTT-TTCATGCGAGCTTTGCCTCCAATAAAATT
8078176 TCACTCGCCT
Statistics
Matches: 236, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
97 92 0.39
98 96 0.41
99 28 0.12
100 20 0.08
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (98 bp):
CTTTGACCAATATGGGTCACTTTTTTCATGCGAGCTTTGCCTCCAATAAAATTCATCCACCTAAT
CCTATTCTTTGCTCACTTTGTGTTTGGCATATT
Found at i:8078929 original size:101 final size:101
Alignment explanation
Indices: 8078794--8079056 Score: 375
Period size: 101 Copynumber: 2.6 Consensus size: 101
8078784 AAACATGACA
* *
8078794 GGAAAGATCTAAGACCGCAACGACGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTTTAAGT
1 GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCTAAGT
* * * * *
8078859 CG-CAACGGCGGACCGTGTACCTTAGAAGACACGATG
66 CGTC-ACAGCGAACCATGTACCTCAGAAGACACGACG
* * * *
8078895 GGAAATATCTAAGACCGGAATGGCGGATCCAGTACCGCAAAAAGATAAAAGGGAAAGGTCTAAGT
1 GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCTAAGT
8078960 CGTCACAGCGAACCATGTACCTCAGAAGACACGACG
66 CGTCACAGCGAACCATGTACCTCAGAAGACACGACG
* * * *
8078996 GGAAAGATCTAAGACCGTAACGGCGGATCTAGTACCGCAAAAAGACAAAAGGCAAAAGTCT
1 GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCT
8079057 TTATCTCTCT
Statistics
Matches: 143, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
101 142 0.99
102 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.26, T:0.13
Consensus pattern (101 bp):
GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCTAAGT
CGTCACAGCGAACCATGTACCTCAGAAGACACGACG
Found at i:8078949 original size:51 final size:51
Alignment explanation
Indices: 8078746--8079047 Score: 217
Period size: 50 Copynumber: 6.0 Consensus size: 51
8078736 AGACACAAAT
* * * * ** *
8078746 GAAAGATCTAAG-CCGCGACGGCGGATCTAGTACCACAAAAACATGACA-G
1 GAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGG
*
8078795 GAAAGATCTAAGACCGCAACGACGGATCCAGTACCGCAAAAAGACAAAAGG
1 GAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGG
* * * * ** * * *
8078846 GAAAGGTTTAAG-TCGCAACGGCGGA-CCGTGTACC-TTAGAAGACACGATGG
1 GAAAGATCTAAGACCGCAACGGCGGATCC-AGTACCGCAAAAAGACA-AAAGG
* * * *
8078896 GAAATATCTAAGACCGGAATGGCGGATCCAGTACCGCAAAAAGATAAAAGG
1 GAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGG
* * * * * * * *
8078947 GAAAGGTCTAAG-TCGTC-ACAGC-GAACCATGTACCTC-AGAAGACACGACGG
1 GAAAGATCTAAGACCG-CAACGGCGGATCCA-GTACCGCAAAAAGACA-AAAGG
* *
8078997 GAAAGATCTAAGACCGTAACGGCGGATCTAGTACCGCAAAAAGACAAAAGG
1 GAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGG
8079048 CAAAAGTCTT
Statistics
Matches: 186, Mismatches: 53, Indels: 26
0.70 0.20 0.10
Matches are distributed among these distances:
49 32 0.17
50 81 0.44
51 54 0.29
52 19 0.10
ACGTcount: A:0.39, C:0.22, G:0.26, T:0.13
Consensus pattern (51 bp):
GAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGG
Found at i:8079164 original size:40 final size:40
Alignment explanation
Indices: 8079109--8079335 Score: 134
Period size: 40 Copynumber: 5.1 Consensus size: 40
8079099 ACATCAATTC
8079109 TTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCT
1 TTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCT
*** *
8079149 TTAT-CTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGTTTCAAACATCAAT
1 TTATCCTCT-TGAAGTTGTAGTAA-AGTTGGAT--AG---C-AA-GTC--T
8079199 TCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCT
1 T--TATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCT
** *
8079241 TTAT-CTCTCTGAAGTTGTAGTAAGAGTAAGATGAAGCTTCAAACATCAGT
1 TTATCCTCT-TGAAGTTGTAGTAA-AGTTGGAT--AG---C-AA-GTC--T
*
8079291 TCCTATTCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCT
1 T--TATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCT
8079333 TTA
1 TTA
8079336 GCAAGTCTTT
Statistics
Matches: 145, Mismatches: 14, Indels: 56
0.67 0.07 0.26
Matches are distributed among these distances:
39 8 0.06
40 37 0.26
41 11 0.08
42 4 0.03
43 4 0.03
44 4 0.03
45 4 0.03
46 4 0.03
47 4 0.03
48 4 0.03
49 4 0.03
50 4 0.03
51 11 0.08
52 34 0.23
53 8 0.06
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.35
Consensus pattern (40 bp):
TTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCT
Found at i:8079208 original size:92 final size:92
Alignment explanation
Indices: 8079051--8079335 Score: 509
Period size: 92 Copynumber: 3.1 Consensus size: 92
8079041 CAAAAGGCAA
*
8079051 AAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTT-AAACATCAATTCTTATCC
1 AAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAG-TTTCAAACATCAATTCCTATCC
8079115 TCTTGAAGTTGTAGTAAAGTTGGATAGC
65 TCTTGAAGTTGTAGTAAAGTTGGATAGC
8079143 AAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGTTTCAAACATCAATTCCTATCCT
1 AAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGTTTCAAACATCAATTCCTATCCT
8079208 CTTGAAGTTGTAGTAAAGTTGGATAGC
66 CTTGAAGTTGTAGTAAAGTTGGATAGC
* * * *
8079235 AAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGTAAGATGAAGCTTCAAACATCAGTTCCTATTCT
1 AAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGTTTCAAACATCAATTCCTATCCT
8079300 CTTGAAGTTGTAGTAAAGTTGGATAGC
66 CTTGAAGTTGTAGTAAAGTTGGATAGC
8079327 AAGTCTTTA
1 AAGTCTTTA
8079336 GCAAGTCTTT
Statistics
Matches: 187, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
91 3 0.02
92 184 0.98
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (92 bp):
AAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGTTTCAAACATCAATTCCTATCCT
CTTGAAGTTGTAGTAAAGTTGGATAGC
Found at i:8079353 original size:52 final size:50
Alignment explanation
Indices: 8079231--8079383 Score: 152
Period size: 51 Copynumber: 3.0 Consensus size: 50
8079221 TAAAGTTGGA
8079231 TAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGTAAGATGAAGCTTC
1 TAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGTAAGATGAAGCTTC
* * * **
8079281 AAACATCAGT-TCCTAT-TCTCTTGAAGTTGTAGTAA-AGTTGGATAGCAAGTCTT-
1 TAGCA--AGTCT-TTATCTCTC-TGAAGTTGTAGTAAGAGTAAGAT-G-AAG-CTTC
* *
8079334 TAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATAAAGCTTC
1 TAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGTAAGATGAAGCTTC
8079384 GGCACCAAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
49 3 0.04
50 6 0.08
51 31 0.39
52 31 0.39
53 6 0.08
54 3 0.04
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (50 bp):
TAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGTAAGATGAAGCTTC
Found at i:8079425 original size:103 final size:103
Alignment explanation
Indices: 8079231--8079426 Score: 261
Period size: 103 Copynumber: 1.9 Consensus size: 103
8079221 TAAAGTTGGA
* * * **
8079231 TAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGTAAGATGAAGCTTCAAACATCAGTTCCTA
1 TAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATAAAGCTTCAAACACCAAATCCTA
* * *
8079296 TTCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTT
66 TTCTCATGAAGATGCAGTAAAGTTGGATAGCAAGTCTT
**
8079334 TAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATAAAGCTTC-GGCACCAAATCCTA
1 TAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATAAAGCTTCAAACACCAAATCCTA
*
8079398 TAT-TCATGAAGATGCAGTAGAGTTTGGAT
66 T-TCTCATGAAGATGCAGTAAAG-TTGGAT
8079427 TCAAATTAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
102 25 0.31
103 55 0.69
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (103 bp):
TAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATAAAGCTTCAAACACCAAATCCTA
TTCTCATGAAGATGCAGTAAAGTTGGATAGCAAGTCTT
Found at i:8079545 original size:39 final size:38
Alignment explanation
Indices: 8079494--8079590 Score: 122
Period size: 39 Copynumber: 2.5 Consensus size: 38
8079484 TTCTCTTTTA
*
8079494 CCTCGAGTCTGGGGCAGATAACAGCCATTCGATCTCTTG
1 CCTCGAGCCTGGGGCAGATAA-AGCCATTCGATCTCTTG
* * *
8079533 CCTCGAGCCTGGGGCAGATTGAAGCCATTTGATCTCTTT
1 CCTCGAGCCTGGGGCAGA-TAAAGCCATTCGATCTCTTG
* *
8079572 CCCCTAGCCTGGGGCAGAT
1 CCTCGAGCCTGGGGCAGAT
8079591 CACCATCAAC
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.02
39 48 0.94
40 2 0.04
ACGTcount: A:0.19, C:0.29, G:0.27, T:0.26
Consensus pattern (38 bp):
CCTCGAGCCTGGGGCAGATAAAGCCATTCGATCTCTTG
Found at i:8080031 original size:17 final size:17
Alignment explanation
Indices: 8080009--8080062 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
8079999 ATTTTTTATT
*
8080009 TTTGAATTTATATTAAG
1 TTTGAATTTATATTAAA
* *
8080026 TTTGAATTGATTTTAAA
1 TTTGAATTTATATTAAA
8080043 TTT--ATTTATATTTAAA
1 TTTGAATTTATA-TTAAA
8080059 TTTG
1 TTTG
8080063 TTTTGAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 5 0.17
16 8 0.27
17 17 0.57
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.57
Consensus pattern (17 bp):
TTTGAATTTATATTAAA
Found at i:8080058 original size:16 final size:16
Alignment explanation
Indices: 8080037--8080091 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
8080027 TTGAATTGAT
8080037 TTTAAATTTATTTATA
1 TTTAAATTTATTTATA
*
8080053 TTTAAATTTGTTT-TGAA
1 TTTAAATTTATTTAT--A
* *
8080070 TTTAAATTTAATTAAA
1 TTTAAATTTATTTATA
8080086 TTTAAA
1 TTTAAA
8080092 ATGGTTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
15 1 0.03
16 19 0.59
17 12 0.38
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (16 bp):
TTTAAATTTATTTATA
Found at i:8080071 original size:27 final size:28
Alignment explanation
Indices: 8080008--8080073 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 28
8079998 AATTTTTTAT
*
8080008 TTTTGAATTTATATTAAGTTTGAATTGA
1 TTTTGAATTTATATTAAGTTTAAATTGA
*
8080036 TTTTAAATTTAT-TTATA-TTTAAATTTG-
1 TTTTGAATTTATATTA-AGTTTAAA-TTGA
8080063 TTTTGAATTTA
1 TTTTGAATTTA
8080074 AATTTAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
27 18 0.55
28 15 0.45
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (28 bp):
TTTTGAATTTATATTAAGTTTAAATTGA
Found at i:8080078 original size:33 final size:33
Alignment explanation
Indices: 8080014--8080091 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
8080004 TTATTTTTGA
* *
8080014 ATTTATA-TTAAGTTTGAATTGATTTTAAATTT
1 ATTTATATTTAAATTTGAATTGAATTTAAATTT
**
8080046 ATTTATATTTAAATTTGTTTTGAATTTAAATTT
1 ATTTATATTTAAATTTGAATTGAATTTAAATTT
* *
8080079 AATTAAATTTAAA
1 ATTTATATTTAAA
8080092 ATGGTTTTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
32 7 0.18
33 32 0.82
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.55
Consensus pattern (33 bp):
ATTTATATTTAAATTTGAATTGAATTTAAATTT
Found at i:8080099 original size:33 final size:33
Alignment explanation
Indices: 8080032--8080099 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 33
8080022 TAAGTTTGAA
* * * * *
8080032 TTGATTTTAAATTTATTTATATTTAAATTTGTT
1 TTGAATTTAAATTTAATTAAATTTAAAATGGTT
8080065 TTGAATTTAAATTTAATTAAATTTAAAATGGTT
1 TTGAATTTAAATTTAATTAAATTTAAAATGGTT
8080098 TT
1 TT
8080100 AAACTTAAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (33 bp):
TTGAATTTAAATTTAATTAAATTTAAAATGGTT
Found at i:8080897 original size:24 final size:24
Alignment explanation
Indices: 8080861--8080912 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
8080851 GTTTTAATAA
*
8080861 TAATGTTAATAATAATAATAACAC
1 TAATGGTAATAATAATAATAACAC
* * * *
8080885 TAATGGTATTAATATTAGTAACAG
1 TAATGGTAATAATAATAATAACAC
8080909 TAAT
1 TAAT
8080913 AATAAATGTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.37
Consensus pattern (24 bp):
TAATGGTAATAATAATAATAACAC
Found at i:8082103 original size:30 final size:29
Alignment explanation
Indices: 8082058--8082161 Score: 122
Period size: 30 Copynumber: 3.5 Consensus size: 29
8082048 GAGGTCCCTA
*
8082058 AACTATCCAAAAATTATATTTTGACCCTTG
1 AACT-TCCAAAAATTACATTTTGACCCTTG
*
8082088 AACTTCTCCAAAATTACATTTTTGACCC-TG
1 AACTTC-CAAAAATTACA-TTTTGACCCTTG
*
8082118 AAACTTCCAAAAATTACATTTTTA-CCTTCG
1 -AACTTCCAAAAATTACATTTTGACCCTT-G
8082148 AACTTCCAAAAATT
1 AACTTCCAAAAATT
8082162 CTATTTTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
28 2 0.03
29 22 0.34
30 26 0.40
31 15 0.23
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.36
Consensus pattern (29 bp):
AACTTCCAAAAATTACATTTTGACCCTTG
Found at i:8082139 original size:29 final size:28
Alignment explanation
Indices: 8082053--8082161 Score: 119
Period size: 29 Copynumber: 3.7 Consensus size: 28
8082043 CCTTGGAGGT
* *
8082053 CCCTAAACTATCCAAAAATTATATTTTGA
1 CCCTGAACT-TCCAAAAATTACATTTTGA
*
8082082 CCCTTGAACTTCTCCAAAATTACATTTTTGA
1 CCC-TGAACTTC-CAAAAATTACA-TTTTGA
*
8082113 CCCTGAAACTTCCAAAAATTACATTTTTA
1 CCCTG-AACTTCCAAAAATTACATTTTGA
*
8082142 CCTTCGAACTTCCAAAAATT
1 CCCT-GAACTTCCAAAAATT
8082162 CTATTTTTTC
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
29 27 0.39
30 27 0.39
31 15 0.22
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (28 bp):
CCCTGAACTTCCAAAAATTACATTTTGA
Found at i:8082170 original size:60 final size:59
Alignment explanation
Indices: 8082053--8082199 Score: 151
Period size: 60 Copynumber: 2.5 Consensus size: 59
8082043 CCTTGGAGGT
* * *
8082053 CCCT-AAACTATCCAAAAATTATATTTTGACCCTTGAACTTCTCCAAAATTACATTTTTGA
1 CCCTGAAACT-TCCAAAAATTACATTTTTACCCTTGAACTTCTCAAAAATTACATTTTT-A
*
8082113 CCCTGAAACTTCCAAAAATTACATTTTTA-CCTTCGAACTTC-CAAAAATT-CTATTTTTTC
1 CCCTGAAACTTCCAAAAATTACATTTTTACCCTT-GAACTTCTCAAAAATTAC-A-TTTTTA
* * *
8082172 CCCCGAAAC-TCCTAAAATTCCATTTTTA
1 CCCTGAAACTTCCAAAAATTACATTTTTA
8082200 ATCTCGAAAC
Statistics
Matches: 76, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
58 18 0.24
59 20 0.26
60 33 0.43
61 5 0.07
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.37
Consensus pattern (59 bp):
CCCTGAAACTTCCAAAAATTACATTTTTACCCTTGAACTTCTCAAAAATTACATTTTTA
Found at i:8082178 original size:29 final size:29
Alignment explanation
Indices: 8082057--8082199 Score: 98
Period size: 29 Copynumber: 4.8 Consensus size: 29
8082047 GGAGGTCCCT
**
8082057 AAACTATCCAAAAATT-ATATTTTGACCCTTG
1 AAACT-TCCAAAAATTCAT-TTTT-ACCCCCG
* *
8082088 -AACTTCTCCAAAATTACATTTTTGA-CCCTG
1 AAACTTC-CAAAAATT-CATTTTT-ACCCCCG
**
8082118 AAACTTCCAAAAATTACATTTTTACCTTCG
1 AAACTTCCAAAAATT-CATTTTTACCCCCG
*
8082148 -AACTTCCAAAAATTCTATTTTTTCCCCCG
1 AAACTTCCAAAAATTC-ATTTTTACCCCCG
*
8082177 AAAC-TCCTAAAATTCCATTTTTA
1 AAACTTCCAAAAATT-CATTTTTA
8082200 ATCTCGAAAC
Statistics
Matches: 93, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
28 1 0.01
29 42 0.45
30 36 0.39
31 12 0.13
32 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.37
Consensus pattern (29 bp):
AAACTTCCAAAAATTCATTTTTACCCCCG
Found at i:8082388 original size:145 final size:145
Alignment explanation
Indices: 8082204--8082517 Score: 402
Period size: 145 Copynumber: 2.2 Consensus size: 145
8082194 TTTTTAATCT
* *
8082204 CGAAACTCTCGAAATTACCATTTTACTACTGGATATCCAAAAATCCTATTTTTGATCTCGATTTC
1 CGAAAGTC-CGAAATTACCATTTTACTACTGGATATCCAAAAATCCTATTTTTGATCCCGATTT-
* * * * *
8082269 TCTAACAATTACCATTTTACCCTCAAGCGTCTAAAATATCATTTTT-AACCTC-ATATTTTCCCA
64 TCTAAAAATTACCATGTTACCCTAAAACGTCTAAAATATCATTTTTAAACC-CGAAATTTTCCCA
8082332 AAATTACCATTTT-TCCC
128 AAATTACCATTTTGTCCC
* * * * *
8082349 TCGAGAGTCCGAAATTACCATTTTAC-CCTCGGATGTCCAAAAATCTTGTTTTTGATCCCGATTT
1 -CGAAAGTCCGAAATTACCATTTTACTACT-GGATATCCAAAAATCCTATTTTTGATCCCGATTT
* * * *
8082413 TCTAAAAATTACCATGTTATCCTAAAATGTCTAAAATGTCATTTTTAAACCCGAAATTTTTCCAA
64 TCTAAAAATTACCATGTTACCCTAAAACGTCTAAAATATCATTTTTAAACCCGAAATTTTCCCAA
8082478 AATTACCATTTTGTCCC
129 AATTACCATTTTGTCCC
*
8082495 CGAAAGTCCAAAATTACCATTTT
1 CGAAAGTCCGAAATTACCATTTT
8082518 GCCTTCGGGT
Statistics
Matches: 146, Mismatches: 18, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
144 42 0.29
145 94 0.64
146 10 0.07
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.37
Consensus pattern (145 bp):
CGAAAGTCCGAAATTACCATTTTACTACTGGATATCCAAAAATCCTATTTTTGATCCCGATTTTC
TAAAAATTACCATGTTACCCTAAAACGTCTAAAATATCATTTTTAAACCCGAAATTTTCCCAAAA
TTACCATTTTGTCCC
Found at i:8082554 original size:145 final size:145
Alignment explanation
Indices: 8082215--8082556 Score: 361
Period size: 145 Copynumber: 2.4 Consensus size: 145
8082205 GAAACTCTCG
* * ** * * *
8082215 AAATTACCATTTTACTACT-GGATATCCAAAAATC-CTATTTTTGATCTCGATTTCTCTAACAAT
1 AAATTACCATTTTAC-CCTCGGATATCCAAAAATCTC-GTTTTCAACCCCGATTTCTCTAAAAAT
* * * *
8082278 TACCATTTTACCCTCAAGCGTCTAAAATATCATTTTTAACCTCATATTTTCCCAAAATTACCATT
64 TACCATGTTACCCTAAAACGTCTAAAATATCATTTTTAACCTCAAATTTTCCCAAAATTACCATT
* *
8082343 TTTCCCTCGAGAGTCCG
129 TTTCCCTCGAAAGTCCA
* * ** *
8082360 AAATTACCATTTTACCCTCGGATGTCCAAAAATCTTGTTTTTGATCCCGATTT-TCTAAAAATTA
1 AAATTACCATTTTACCCTCGGATATCCAAAAATCTCGTTTTCAACCCCGATTTCTCTAAAAATTA
* * * *
8082424 CCATGTTATCCTAAAATGTCTAAAATGTCATTTTTAAACC-CGAAATTTTTCCAAAATTACCATT
66 CCATGTTACCCTAAAACGTCTAAAATATCATTTTT-AACCTC-AAATTTTCCCAAAATTACCATT
8082488 TTGTCCC-CGAAAGTCCA
129 TT-TCCCTCGAAAGTCCA
* * * **
8082505 AAATTACCATTTTGCCTTCGGGTATCCAAAGTTCTCGTTTTCAACCCCGATT
1 AAATTACCATTTTACCCTCGGATATCCAAAAATCTCGTTTTCAACCCCGATT
8082557 GAATCATTTT
Statistics
Matches: 166, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
144 42 0.25
145 120 0.72
146 4 0.02
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (145 bp):
AAATTACCATTTTACCCTCGGATATCCAAAAATCTCGTTTTCAACCCCGATTTCTCTAAAAATTA
CCATGTTACCCTAAAACGTCTAAAATATCATTTTTAACCTCAAATTTTCCCAAAATTACCATTTT
TCCCTCGAAAGTCCA
Found at i:8082852 original size:96 final size:96
Alignment explanation
Indices: 8082752--8082943 Score: 244
Period size: 96 Copynumber: 2.0 Consensus size: 96
8082742 AAAACTTTAA
* * * * * *
8082752 AATCGAGGCAATA-TTCTTTTATTTTGAGTT-TCGAAATTTTGCACCTTAACTTACTAGGTGCGG
1 AATCGAGGCAATATTTC-CTTATCTTCAGTTAT-GAAAATTTGCACCTTAACTCACTAGGTGCAG
* * *
8082815 TTTTTTTTCAAATCGAAATAATCGAATATCCTT
64 CTTTTCTTCAAATCGAAATAATCAAATATCCTT
* *
8082848 AATCGAGGCAATGTTTCCTTATCTTCAGTTATGAAAATTTGCGCCTTAACTCACTAGGTGCAGCT
1 AATCGAGGCAATATTTCCTTATCTTCAGTTATGAAAATTTGCACCTTAACTCACTAGGTGCAGCT
*
8082913 TTTCTTCAAATCGAGATAATCAAATATCCTT
66 TTTCTTCAAATCGAAATAATCAAATATCCTT
8082944 CTTCAAATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
96 78 0.95
97 4 0.05
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (96 bp):
AATCGAGGCAATATTTCCTTATCTTCAGTTATGAAAATTTGCACCTTAACTCACTAGGTGCAGCT
TTTCTTCAAATCGAAATAATCAAATATCCTT
Found at i:8088807 original size:14 final size:14
Alignment explanation
Indices: 8088789--8088837 Score: 80
Period size: 14 Copynumber: 3.5 Consensus size: 14
8088779 AAAAGTAATT
* *
8088789 CATTTTCGAGAAAT
1 CATTTTCCAGAAAC
8088803 CATTTTCCAGAAAC
1 CATTTTCCAGAAAC
8088817 CATTTTCCAGAAAC
1 CATTTTCCAGAAAC
8088831 CATTTTC
1 CATTTTC
8088838 AGTCAAACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.35
Consensus pattern (14 bp):
CATTTTCCAGAAAC
Found at i:8096185 original size:17 final size:17
Alignment explanation
Indices: 8096165--8096198 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8096155 TCAATGTAAA
*
8096165 TTTTCGATTTATTTTAAT
1 TTTTC-ATTTAATTTAAT
8096183 TTTTCATTTAATTTAA
1 TTTTCATTTAATTTAA
8096199 AAAATTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTTCATTTAATTTAAT
Found at i:8099350 original size:22 final size:22
Alignment explanation
Indices: 8099309--8099378 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 22
8099299 CAATAACAAT
* * *
8099309 AAAATAATAGCAATATAATAGA
1 AAAATAATAGCAAAACAATAAA
* *
8099331 GAAATGATAGCAAAACAATAAA
1 AAAATAATAGCAAAACAATAAA
* *
8099353 AAAATAATGGCAAAACAGTAAA
1 AAAATAATAGCAAAACAATAAA
8099375 AAAA
1 AAAA
8099379 AGCATAAGTT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.66, C:0.07, G:0.11, T:0.16
Consensus pattern (22 bp):
AAAATAATAGCAAAACAATAAA
Found at i:8102313 original size:30 final size:30
Alignment explanation
Indices: 8102279--8102344 Score: 132
Period size: 30 Copynumber: 2.2 Consensus size: 30
8102269 GACACTTGTT
8102279 AATTTCTTGATCTTGTTTATGAAATTTAAA
1 AATTTCTTGATCTTGTTTATGAAATTTAAA
8102309 AATTTCTTGATCTTGTTTATGAAATTTAAA
1 AATTTCTTGATCTTGTTTATGAAATTTAAA
8102339 AATTTC
1 AATTTC
8102345 ACTGAACCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.33, C:0.08, G:0.09, T:0.50
Consensus pattern (30 bp):
AATTTCTTGATCTTGTTTATGAAATTTAAA
Found at i:8104898 original size:31 final size:31
Alignment explanation
Indices: 8104860--8104919 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
8104850 TTTAAAATTA
*
8104860 ATATATATATATATA--TATTAGAAATGCAT
1 ATATATATATATATAGTTACTAGAAATGCAT
8104889 ATATATATATATATAGTTACTAGAAATGCAT
1 ATATATATATATATAGTTACTAGAAATGCAT
8104920 GTTTGGAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 15 0.54
31 13 0.46
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.40
Consensus pattern (31 bp):
ATATATATATATATAGTTACTAGAAATGCAT
Found at i:8110937 original size:11 final size:11
Alignment explanation
Indices: 8110921--8110959 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
8110911 AAAATTTAAC
8110921 AATTATAAAAA
1 AATTATAAAAA
8110932 AATTAT--AAA
1 AATTATAAAAA
8110941 AATTATAAAAA
1 AATTATAAAAA
*
8110952 AAATATAA
1 AATTATAA
8110960 GATTTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 9 0.36
11 16 0.64
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AATTATAAAAA
Found at i:8110946 original size:20 final size:20
Alignment explanation
Indices: 8110911--8110959 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
8110901 AAACCCTTTC
*
8110911 AAAATT-TAACAATTATAAA
1 AAAATTATAAAAATTATAAA
8110930 AAAATTATAAAAATTATAAA
1 AAAATTATAAAAATTATAAA
*
8110950 AAAAATATAA
1 AAAATTATAA
8110960 GATTTTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 6 0.22
20 21 0.78
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAATTATAAAAATTATAAA
Found at i:8110980 original size:16 final size:17
Alignment explanation
Indices: 8110950--8110982 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8110940 AAATTATAAA
8110950 AAAAATATAAGATTTTT
1 AAAAATATAAGATTTTT
*
8110967 AAAATTATAA-ATTTTT
1 AAAAATATAAGATTTTT
8110983 TATTAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
AAAAATATAAGATTTTT
Found at i:8118527 original size:17 final size:16
Alignment explanation
Indices: 8118507--8118540 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
8118497 AACATGTATC
8118507 ATATAATAATATATTTA
1 ATATAATAATAT-TTTA
*
8118524 ATATAATATTATTTTA
1 ATATAATAATATTTTA
8118540 A
1 A
8118541 AAATTCTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATAATAATATTTTA
Found at i:8120757 original size:34 final size:35
Alignment explanation
Indices: 8120712--8120786 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 35
8120702 GTACTATTGG
* **
8120712 TATTTTAATCATA-CTCA-TTAATATATATATTTGA
1 TATTTTAATCATATC-CATTTAAAATATATATTAAA
*
8120746 TATTTTTATCATATCCATTTAAAATATATATTAAA
1 TATTTTAATCATATCCATTTAAAATATATATTAAA
8120781 TATTTT
1 TATTTT
8120787 CATTTATATG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
34 14 0.40
35 21 0.60
ACGTcount: A:0.39, C:0.08, G:0.01, T:0.52
Consensus pattern (35 bp):
TATTTTAATCATATCCATTTAAAATATATATTAAA
Found at i:8132691 original size:17 final size:18
Alignment explanation
Indices: 8132653--8132692 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
8132643 ACGAAATTAA
*
8132653 AATTGAATTGAGAAAATT
1 AATTTAATTGAGAAAATT
8132671 -ATTTAATT-AGAAAATT
1 AATTTAATTGAGAAAATT
8132687 AATTTA
1 AATTTA
8132693 TTTAAAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (18 bp):
AATTTAATTGAGAAAATT
Found at i:8133717 original size:12 final size:12
Alignment explanation
Indices: 8133688--8133722 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
8133678 ATCATTAATA
8133688 AATAAACGAGCT
1 AATAAACGAGCT
*
8133700 -ATAAACGAGTT
1 AATAAACGAGCT
8133711 AATAAACGAGCT
1 AATAAACGAGCT
8133723 TGTTCGTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (12 bp):
AATAAACGAGCT
Found at i:8134635 original size:14 final size:14
Alignment explanation
Indices: 8134584--8134636 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
8134574 TTTTTATTAC
*
8134584 AAAACTAATACAAAA
1 AAAATTAATAC-AAA
**
8134599 AAAATT-ATACACC
1 AAAATTAATACAAA
8134612 AAAATATAATACAAA
1 AAAAT-TAATACAAA
8134627 AAAATTAATA
1 AAAATTAATA
8134637 ACTTAAATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
13 6 0.19
14 10 0.32
15 15 0.48
ACGTcount: A:0.68, C:0.11, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAATTAATACAAA
Found at i:8134919 original size:22 final size:22
Alignment explanation
Indices: 8134894--8134960 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 22
8134884 TTTAATTTAA
8134894 TTTTTTTAATTTTATAATATTT
1 TTTTTTTAATTTTATAATATTT
** * * *
8134916 TTTTTACAATTTTATAAAAATA
1 TTTTTTTAATTTTATAATATTT
* *
8134938 TTTTTTTACTTTTTTAAT-TTT
1 TTTTTTTAATTTTATAATATTT
8134959 TT
1 TT
8134961 ATAATTTGAA
Statistics
Matches: 33, Mismatches: 12, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
21 3 0.09
22 30 0.91
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTTTTTAATTTTATAATATTT
Found at i:8135032 original size:15 final size:15
Alignment explanation
Indices: 8135014--8135056 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
8135004 AGTTATTAAT
8135014 TTTTTTTGTATTATA
1 TTTTTTTGTATTATA
** * *
8135029 TTTTGGTGTATAATT
1 TTTTTTTGTATTATA
8135044 TTTTTTTGTATTA
1 TTTTTTTGTATTA
8135057 GTTTTGTAAT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.70
Consensus pattern (15 bp):
TTTTTTTGTATTATA
Found at i:8135130 original size:27 final size:27
Alignment explanation
Indices: 8135108--8135159 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
8135098 GACACCATTG
8135108 GTGCCGCCTGTCAGGTAGGCACCACTA
1 GTGCCGCCTGTCAGGTAGGCACCACTA
8135135 GTGCCGCCTGTCAGGTAGGCACCAC
1 GTGCCGCCTGTCAGGTAGGCACCAC
8135160 CCACTTATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.35, G:0.31, T:0.17
Consensus pattern (27 bp):
GTGCCGCCTGTCAGGTAGGCACCACTA
Found at i:8139470 original size:17 final size:16
Alignment explanation
Indices: 8139447--8139494 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
8139437 CCGAATTGAA
8139447 TTTTCTTACCTCTCCC
1 TTTTCTTACCTCTCCC
* **
8139463 TATTTCTTCCCTCTTTC
1 T-TTTCTTACCTCTCCC
*
8139480 TTTTCTTTCCTCTCC
1 TTTTCTTACCTCTCC
8139495 TTTACATCAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.04, C:0.40, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTTCTTACCTCTCCC
Found at i:8140624 original size:42 final size:43
Alignment explanation
Indices: 8140506--8140624 Score: 113
Period size: 40 Copynumber: 2.8 Consensus size: 43
8140496 TAGTTCAATA
* *
8140506 ATCTGCAAATAGTGTGGTTCGTTCA-TGAACTAAGTGGCAGTTTTT
1 ATCTGCAAATA-TGTGGTTCGATCACT-AACCAAGTGGCAG-TTTT
* * * *
8140551 ATCTGTAAAAATGTTGTGC-ATTCAC-AA-CAAGTGGCAG-TTT
1 ATCTGCAAATATGTGGTTCGA-TCACTAACCAAGTGGCAGTTTT
8140591 ATCTGCAAATATGTGGTTCGATCACTAACCAAGT
1 ATCTGCAAATATGTGGTTCGATCACTAACCAAGT
8140625 TACAATTTAT
Statistics
Matches: 59, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
40 22 0.37
41 3 0.05
42 14 0.24
43 2 0.03
44 9 0.15
45 9 0.15
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (43 bp):
ATCTGCAAATATGTGGTTCGATCACTAACCAAGTGGCAGTTTT
Found at i:8141776 original size:46 final size:46
Alignment explanation
Indices: 8141723--8141817 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
8141713 TATGATTAAC
8141723 TTTACATAAAATCTTAGAAATTATAAAATTATAATTTGCTTTGTTT
1 TTTACATAAAATCTTAGAAATTATAAAATTATAATTTGCTTTGTTT
*
8141769 TTTACATAAAATCTTAGTAATTATAAAATTATAATTTGCTTTGTTT
1 TTTACATAAAATCTTAGAAATTATAAAATTATAATTTGCTTTGTTT
8141815 TTT
1 TTT
8141818 TTATATTCAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51
Consensus pattern (46 bp):
TTTACATAAAATCTTAGAAATTATAAAATTATAATTTGCTTTGTTT
Found at i:8143152 original size:11 final size:11
Alignment explanation
Indices: 8143133--8143185 Score: 79
Period size: 11 Copynumber: 4.7 Consensus size: 11
8143123 TTTGAAATTA
*
8143133 AATTAAATTTT
1 AATTTAATTTT
8143144 AATTTAATTTT
1 AATTTAATTTT
8143155 AATTTTAATTTT
1 AA-TTTAATTTT
*
8143167 AATTTAATTTA
1 AATTTAATTTT
8143178 AATTTAAT
1 AATTTAAT
8143186 ATTATTATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
11 28 0.72
12 11 0.28
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
AATTTAATTTT
Found at i:8143155 original size:6 final size:6
Alignment explanation
Indices: 8143138--8143182 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
8143128 AATTAAATTA
*
8143138 AATTTT AA-TTT AATTTT AATTTT AATTTT AA-TTT AATTTA AATTT
1 AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT AATTT
8143183 AATATTATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
5 10 0.28
6 26 0.72
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (6 bp):
AATTTT
Found at i:8143158 original size:17 final size:17
Alignment explanation
Indices: 8143138--8143185 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
8143128 AATTAAATTA
8143138 AATTTTAATTTAATTTT
1 AATTTTAATTTAATTTT
8143155 AATTTTAATTTTAA-TTT
1 AATTTTAA-TTTAATTTT
*
8143172 AATTTAAATTTAAT
1 AATTTTAATTTAAT
8143186 ATTATTATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 5 0.18
17 18 0.64
18 5 0.18
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
AATTTTAATTTAATTTT
Found at i:8143196 original size:17 final size:16
Alignment explanation
Indices: 8143127--8143201 Score: 71
Period size: 16 Copynumber: 4.5 Consensus size: 16
8143117 TTTTACTTTG
* *
8143127 AAATTAAATTAAATTT
1 AAATTTAATTTAATTT
*
8143143 TAATTTAATTTTAATTTT
1 AAATTTAA-TTTAA-TTT
*
8143161 AATTTTAATTTAATTT
1 AAATTTAATTTAATTT
8143177 AAATTTAATATT-ATTAT
1 AAATTTAAT-TTAATT-T
8143194 AAATTTAA
1 AAATTTAA
8143202 AAAGAAAAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
16 20 0.41
17 20 0.41
18 9 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
AAATTTAATTTAATTT
Found at i:8143198 original size:23 final size:23
Alignment explanation
Indices: 8143117--8143202 Score: 88
Period size: 23 Copynumber: 3.8 Consensus size: 23
8143107 GTGGAATCAT
* *
8143117 TTTTACTTTGAAA-TTAAATTAAA
1 TTTTAATTT-AAATTTAAATTTAA
* *
8143140 TTTTAATTTAATTTTAATTTTAA
1 TTTTAATTTAAATTTAAATTTAA
8143163 TTTTAATTT-AATTTAAATTTAA
1 TTTTAATTTAAATTTAAATTTAA
*
8143185 TATT-ATTATAAATTTAAA
1 TTTTAATT-TAAATTTAAA
8143203 AAGAAAAATC
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
21 3 0.06
22 17 0.32
23 33 0.62
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (23 bp):
TTTTAATTTAAATTTAAATTTAA
Found at i:8143202 original size:6 final size:6
Alignment explanation
Indices: 8143130--8143184 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
8143120 TACTTTGAAA
* * * *
8143130 TTAAA- TTAAAT TTTAAT TT-AAT TTTAAT TTTAAT TTTAAT TT-AAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
8143175 TTAAAT TTAA
1 TTAAAT TTAA
8143185 TATTATTATA
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
5 15 0.33
6 31 0.67
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (6 bp):
TTAAAT
Found at i:8144356 original size:29 final size:29
Alignment explanation
Indices: 8144283--8144444 Score: 121
Period size: 30 Copynumber: 5.6 Consensus size: 29
8144273 TAAAAATTTT
** * *
8144283 AAAAATTACATTTTAACCCCGAAACTTCTT
1 AAAAATTACATTTTTGCCCCTAAACTTC-C
**
8144313 GGAAATTACATTTTTGCCCCTAAACTTCC
1 AAAAATTACATTTTTGCCCCTAAACTTCC
* * * *
8144342 AAAAATTTCATTTTTTACCTCAAAACTTCC
1 AAAAATTACA-TTTTTGCCCCTAAACTTCC
* * * *
8144372 CAAAATTACGTTTTT-ACGCTAAACTTCC
1 AAAAATTACATTTTTGCCCCTAAACTTCC
* *
8144400 AAAAATTCCATTTTTG-ACCTAGAACTTCC
1 AAAAATTACATTTTTGCCCCTA-AACTTCC
* *
8144429 AAAAGTTCCATTTTTG
1 AAAAATTACATTTTTG
8144445 ATCCCGAAAT
Statistics
Matches: 105, Mismatches: 24, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
28 25 0.24
29 34 0.32
30 46 0.44
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.36
Consensus pattern (29 bp):
AAAAATTACATTTTTGCCCCTAAACTTCC
Found at i:8144445 original size:29 final size:28
Alignment explanation
Indices: 8144315--8144445 Score: 138
Period size: 29 Copynumber: 4.5 Consensus size: 28
8144305 AACTTCTTGG
* *
8144315 AAATTACATTTTTGCCCCTAAACTTCCAA
1 AAATTCCATTTTTG-ACCTAAACTTCCAA
* * *
8144344 AAATTTCATTTTTTACCTCAAAACTTCCCA
1 AAATTCCATTTTTGACCT--AAACTTCCAA
* *
8144374 AAATTACGTTTTT-ACGCTAAACTTCCAA
1 AAATTCCATTTTTGAC-CTAAACTTCCAA
8144402 AAATTCCATTTTTGACCTAGAACTTCCAA
1 AAATTCCATTTTTGACCTA-AACTTCCAA
*
8144431 AAGTTCCATTTTTGA
1 AAATTCCATTTTTGA
8144446 TCCCGAAATT
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
28 26 0.30
29 39 0.45
30 22 0.25
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.37
Consensus pattern (28 bp):
AAATTCCATTTTTGACCTAAACTTCCAA
Found at i:8151665 original size:18 final size:18
Alignment explanation
Indices: 8151639--8151674 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8151629 AGATGTAAAG
8151639 GAAAAGAAGAAAGAGATA
1 GAAAAGAAGAAAGAGATA
* *
8151657 GAAAGGAAGCAAGAGATA
1 GAAAAGAAGAAAGAGATA
8151675 AGGAAAGCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.31, T:0.06
Consensus pattern (18 bp):
GAAAAGAAGAAAGAGATA
Found at i:8156621 original size:92 final size:92
Alignment explanation
Indices: 8156464--8156922 Score: 848
Period size: 92 Copynumber: 5.0 Consensus size: 92
8156454 GGTGGATCAT
*
8156464 ATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGCTGGATAGCAAGTCTTTATCTCTCT
1 ATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCT
*
8156529 GAAGTTGTAGTAAGAGCAAGGTGAAGC
66 GAAGTTGTAGTAAGAGCAAGATGAAGC
8156556 ATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCT
1 ATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCT
*
8156621 GAAGTTGTAGTAAGAGTAAGATGAAGC
66 GAAGTTGTAGTAAGAGCAAGATGAAGC
*
8156648 CTCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCT
1 ATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCT
8156713 GAAGTTGTAGTAAGAGCAAGATGAAGC
66 GAAGTTGTAGTAAGAGCAAGATGAAGC
*
8156740 ATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAGGTCTTTATCTCTCT
1 ATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCT
8156805 GAAGTTGTAGTAAGAGCAA-ATGAAGC
66 GAAGTTGTAGTAAGAGCAAGATGAAGC
* *
8156831 CTCAAACATCAATTCCTATCCTCTTGAAGTTGTAATAAAGTTGGATAGCAAGTCTTTATCTCTCT
1 ATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCT
8156896 GAAGTTGTAGTAAGAGCAAGATGAAGC
66 GAAGTTGTAGTAAGAGCAAGATGAAGC
8156923 CTCGACATCA
Statistics
Matches: 356, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
91 88 0.25
92 268 0.75
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (92 bp):
ATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCT
GAAGTTGTAGTAAGAGCAAGATGAAGC
Found at i:8157209 original size:11 final size:11
Alignment explanation
Indices: 8157188--8157239 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
8157178 TTTGAAATTA
*
8157188 AATTTATTTTT
1 AATTTAATTTT
*
8157199 ATTTTAATTTT
1 AATTTAATTTT
* *
8157210 AATTTAAATTG
1 AATTTAATTTT
*
8157221 AATTTAATTTA
1 AATTTAATTTT
8157232 AATTTAAT
1 AATTTAAT
8157240 ATTATATAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (11 bp):
AATTTAATTTT
Found at i:8159220 original size:29 final size:29
Alignment explanation
Indices: 8159179--8159402 Score: 206
Period size: 28 Copynumber: 7.8 Consensus size: 29
8159169 GGAGGTCCTT
* **
8159179 AAACTGTCCAAAAATTACATTTTGACGTTA
1 AAACT-TCTAAAAATTACATTTTGACCCTA
* *
8159209 AAACTTCTAAAAATTACATTTTAACCC-G
1 AAACTTCTAAAAATTACATTTTGACCCTA
* *
8159237 AAACTTCTTTAAAATTACATTTTTGACCTTA
1 AAACTTC-TAAAAATTACA-TTTTGACCCTA
*
8159268 AAACTTCTAAAAATTTCATTTTGACCCTA
1 AAACTTCTAAAAATTACATTTTGACCCTA
* *
8159297 AAACTTCTAAAAACTACATTTT-ACCCCA
1 AAACTTCTAAAAATTACATTTTGACCCTA
* * **
8159325 AAACTTCCAAAAACTACATTTT-ACCCCC
1 AAACTTCTAAAAATTACATTTTGACCCTA
* *
8159353 AAACTTCCAAAAATT-CATTTTTGA-CCTC
1 AAACTTCTAAAAATTACA-TTTTGACCCTA
* * *
8159381 GAACTTCCAAAAATTCCATTTT
1 AAACTTCTAAAAATTACATTTT
8159403 TGATCTCGGA
Statistics
Matches: 168, Mismatches: 20, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.01
28 77 0.46
29 61 0.36
30 21 0.12
31 7 0.04
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.34
Consensus pattern (29 bp):
AAACTTCTAAAAATTACATTTTGACCCTA
Found at i:8159241 original size:28 final size:28
Alignment explanation
Indices: 8159179--8159373 Score: 176
Period size: 29 Copynumber: 6.8 Consensus size: 28
8159169 GGAGGTCCTT
* * **
8159179 AAACTGTCCAAAAATTACATTTTGACGTTA
1 AAACT-TCTAAAAATTACATTTTAAC-CCA
*
8159209 AAACTTCTAAAAATTACATTTTAACCCG
1 AAACTTCTAAAAATTACATTTTAACCCA
* * *
8159237 AAACTTCTTTAAAATTACATTTTTGACCTTA
1 AAACTTC-TAAAAATTACA-TTTTAACC-CA
* *
8159268 AAACTTCTAAAAATTTCATTTTGACCCTA
1 AAACTTCTAAAAATTACATTTTAACCC-A
* *
8159297 AAACTTCTAAAAACTACATTTTACCCCA
1 AAACTTCTAAAAATTACATTTTAACCCA
* * * *
8159325 AAACTTCCAAAAACTACATTTTACCCCC
1 AAACTTCTAAAAATTACATTTTAACCCA
*
8159353 AAACTTCCAAAAATT-CATTTT
1 AAACTTCTAAAAATTACATTTT
8159374 TGACCTCGAA
Statistics
Matches: 142, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
27 6 0.04
28 48 0.34
29 60 0.42
30 21 0.15
31 7 0.05
ACGTcount: A:0.40, C:0.23, G:0.03, T:0.34
Consensus pattern (28 bp):
AAACTTCTAAAAATTACATTTTAACCCA
Found at i:8159403 original size:29 final size:29
Alignment explanation
Indices: 8159354--8159415 Score: 99
Period size: 28 Copynumber: 2.1 Consensus size: 29
8159344 TTTACCCCCA
8159354 AACTTCCAAAAATTCATTTTTGACCTC-G
1 AACTTCCAAAAATTCATTTTTGACCTCGG
*
8159382 AACTTCCAAAAATTCCATTTTTGATCTCGG
1 AACTTCCAAAAATT-CATTTTTGACCTCGG
8159412 AACT
1 AACT
8159416 CTCGAAATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 14 0.45
29 12 0.39
30 5 0.16
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.35
Consensus pattern (29 bp):
AACTTCCAAAAATTCATTTTTGACCTCGG
Found at i:8160925 original size:77 final size:77
Alignment explanation
Indices: 8160781--8160992 Score: 380
Period size: 77 Copynumber: 2.8 Consensus size: 77
8160771 TTTTAATTTT
8160781 AAATTATTTATTGATGACAAATAGTGCT-GG----GTAATGTAAGGTATAAGTCCATATCATGTC
1 AAATTATTTATTGATGACAAATAGTGCTGGGTAATGTAATGTAAGGTATAAGTCCATATCATGTC
8160841 AACATCAATAAA
66 AACATCAATAAA
*
8160853 AAATTATTTATTAATGACAAATAGTGCTGGGTAATGTAATGTAAGGTATAAGTCCATATCATGTC
1 AAATTATTTATTGATGACAAATAGTGCTGGGTAATGTAATGTAAGGTATAAGTCCATATCATGTC
8160918 AACATCAATAAA
66 AACATCAATAAA
8160930 AAATTATTTATTGATGACAAATAGTGCTGGGTAATGTAATGTAAGGTATAAGTCCATATCATG
1 AAATTATTTATTGATGACAAATAGTGCTGGGTAATGTAATGTAAGGTATAAGTCCATATCATG
8160993 CTGTAATGTA
Statistics
Matches: 133, Mismatches: 2, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
72 27 0.20
73 2 0.02
77 104 0.78
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (77 bp):
AAATTATTTATTGATGACAAATAGTGCTGGGTAATGTAATGTAAGGTATAAGTCCATATCATGTC
AACATCAATAAA
Found at i:8166791 original size:29 final size:31
Alignment explanation
Indices: 8166758--8166821 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 31
8166748 CAAACGGGGG
8166758 CAAAAATG-AAGTTTCGAA-GAATTTAG-GAT
1 CAAAAATGTAAGTTTC-AAGGAATTTAGAGAT
* *
8166787 -GAAAATGTAATTTTCAAGGAATTTAGAGAT
1 CAAAAATGTAAGTTTCAAGGAATTTAGAGAT
8166817 CAAAA
1 CAAAA
8166822 TCAAATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
28 8 0.29
29 14 0.50
30 3 0.11
31 3 0.11
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (31 bp):
CAAAAATGTAAGTTTCAAGGAATTTAGAGAT
Found at i:8166840 original size:30 final size:29
Alignment explanation
Indices: 8166806--8166877 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
8166796 ATTTTCAAGG
* *
8166806 AATTTAGAGATCAAAATCAAATTTTTGAAA
1 AATTT-GAGATCAAAATCAAACTTGTGAAA
* * *
8166836 AATTTGGGATTAAAATCAAACTTGTGGAA
1 AATTTGAGATCAAAATCAAACTTGTGAAA
*
8166865 AATTTGAGGTCAA
1 AATTTGAGATCAA
8166878 GAATGTGACT
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
29 29 0.85
30 5 0.15
ACGTcount: A:0.44, C:0.07, G:0.17, T:0.32
Consensus pattern (29 bp):
AATTTGAGATCAAAATCAAACTTGTGAAA
Found at i:8166896 original size:29 final size:29
Alignment explanation
Indices: 8166855--8166910 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
8166845 TTAAAATCAA
*
8166855 ACTTGTGGAAAATTTGAGGTCAAGAATGTG
1 ACTTGTGGAAAATTTGAGGACAA-AATGTG
*
8166885 ACTTTTGG-AAATTTGAGGACAAAATG
1 ACTTGTGGAAAATTTGAGGACAAAATG
8166911 GTAATTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 13 0.54
30 7 0.29
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (29 bp):
ACTTGTGGAAAATTTGAGGACAAAATGTG
Found at i:8166919 original size:29 final size:28
Alignment explanation
Indices: 8166864--8167183 Score: 164
Period size: 30 Copynumber: 11.0 Consensus size: 28
8166854 AACTTGTGGA
* * *
8166864 AAATTTGAGGTCAAGAATGTGACTTTTGG
1 AAATTCGAGGTCAA-AATGTAATTTTTGG
* *
8166893 AAATTTGAGGACAAAATGGTAATTTTT-G
1 AAATTCGAGGTCAAAAT-GTAATTTTTGG
* *
8166921 -AATGCTCGGGGGCAAAATGGTAATTTTTGG
1 AAAT--TCGAGGTCAAAAT-GTAATTTTTGG
**
8166951 ATGTTCGAGGGT-AAAATGATAA-TTTTGG
1 AAATTCGA-GGTCAAAATG-TAATTTTTGG
** *
8166979 ATGTTCGGGGTCAAAATGTAATTTTTGAG
1 AAATTCGAGGTCAAAATGTAATTTTTG-G
* * * *
8167008 AAGTTTAGGGGTTAAAATGTAATTTTTGG
1 AA-ATTCGAGGTCAAAATGTAATTTTTGG
** * *
8167037 AAAATTATAGGGTTAAAATGCAATTTTTGG
1 -AAATTCGA-GGTCAAAATGTAATTTTTGG
* * *
8167067 AAAGTTTGGGGGTCAAAATGT-ATTTTTGC
1 AAA--TTCGAGGTCAAAATGTAATTTTTGG
** * *
8167096 AAATTTTAAGGTCAAAATTTAATATTTGG
1 AAA-TTCGAGGTCAAAATGTAATTTTTGG
* *
8167125 AAAGTTCAAGGGTCAAAATATAATTTTTGAG
1 AAA-TTCGA-GGTCAAAATGTAATTTTTG-G
* *
8167156 AAGTTCGAGGATTAAAATGTAATTTTTG
1 AAATTCGAGG-TCAAAATGTAATTTTTG
8167184 AGAAGTTTAG
Statistics
Matches: 233, Mismatches: 39, Indels: 37
0.75 0.13 0.12
Matches are distributed among these distances:
27 9 0.04
28 42 0.18
29 85 0.36
30 91 0.39
31 6 0.03
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (28 bp):
AAATTCGAGGTCAAAATGTAATTTTTGG
Found at i:8166949 original size:58 final size:56
Alignment explanation
Indices: 8166887--8167005 Score: 139
Period size: 58 Copynumber: 2.1 Consensus size: 56
8166877 AGAATGTGAC
* *
8166887 TTTTGGAAATTTGAGGACAAAATGGTAATTTTTGAATGCTCGGGGGCAAAATGGTAAT
1 TTTTGGAAATTCGAGGACAAAATGATAA-TTTTGAATGCTCGGGGGCAAAAT-GTAAT
** ** * * *
8166945 TTTTGGATGTTCGAGGGTAAAATGATAATTTTGGATGTTCGGGGTCAAAATGTAAT
1 TTTTGGAAATTCGAGGACAAAATGATAATTTTGAATGCTCGGGGGCAAAATGTAAT
8167001 TTTTG
1 TTTTG
8167006 AGAAGTTTAG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
56 10 0.19
57 20 0.38
58 22 0.42
ACGTcount: A:0.29, C:0.06, G:0.28, T:0.37
Consensus pattern (56 bp):
TTTTGGAAATTCGAGGACAAAATGATAATTTTGAATGCTCGGGGGCAAAATGTAAT
Found at i:8166985 original size:28 final size:28
Alignment explanation
Indices: 8166905--8167037 Score: 137
Period size: 29 Copynumber: 4.6 Consensus size: 28
8166895 ATTTGAGGAC
* * *
8166905 AAAATGGTAATTTTTGAATGCTCGGGGGC
1 AAAATGGTAATTTTTGGATGTTC-GGGGT
8166934 AAAATGGTAATTTTTGGATGTTCGAGGGT
1 AAAATGGTAATTTTTGGATGTTCG-GGGT
*
8166963 AAAATGATAA-TTTTGGATGTTCGGGGT
1 AAAATGGTAATTTTTGGATGTTCGGGGT
* *
8166990 CAAAAT-GTAATTTTTGAGAAGTTTAGGGGTT
1 -AAAATGGTAATTTTTG-GATG-TTCGGGG-T
8167021 AAAAT-GTAATTTTTGGA
1 AAAATGGTAATTTTTGGA
8167038 AAATTATAGG
Statistics
Matches: 91, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
27 7 0.08
28 24 0.26
29 38 0.42
30 21 0.23
31 1 0.01
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.37
Consensus pattern (28 bp):
AAAATGGTAATTTTTGGATGTTCGGGGT
Found at i:8167025 original size:30 final size:30
Alignment explanation
Indices: 8166928--8167203 Score: 175
Period size: 30 Copynumber: 9.4 Consensus size: 30
8166918 TTGAATGCTC
* * *
8166928 GGGGGCAAAATGGTAATTTTTG-GATG-TTC
1 GGGGTCAAAAT-GTAATTTTTGAGAAGTTTA
* *
8166957 GAGGGT-AAAATGATAA-TTTTG-GATG-TTC
1 G-GGGTCAAAATG-TAATTTTTGAGAAGTTTA
8166985 GGGGTCAAAATGTAATTTTTGAGAAGTTTA
1 GGGGTCAAAATGTAATTTTTGAGAAGTTTA
* *
8167015 GGGGTTAAAATGTAATTTTTG-GAAAATTATA
1 GGGGTCAAAATGTAATTTTTGAG-AAGTT-TA
* * *
8167046 -GGGTTAAAATGCAATTTTTG-GAAAGTTTG
1 GGGGTCAAAATGTAATTTTTGAG-AAGTTTA
*
8167075 GGGGTCAAAATGT-ATTTTTGCA-AATTTTA
1 GGGGTCAAAATGTAATTTTTG-AGAAGTTTA
* * * *
8167104 -AGGTCAAAATTTAATATTTG-GAAAGTTCA
1 GGGGTCAAAATGTAATTTTTGAG-AAGTTTA
* * *
8167133 AGGGTCAAAATATAATTTTTGAGAAG-TTC
1 GGGGTCAAAATGTAATTTTTGAGAAGTTTA
* *
8167162 GAGGATTAAAATGTAATTTTTGAGAAGTTTA
1 G-GGGTCAAAATGTAATTTTTGAGAAGTTTA
* *
8167193 GGAGTTAAAAT
1 GGGGTCAAAAT
8167204 AGGATTTTTA
Statistics
Matches: 200, Mismatches: 29, Indels: 35
0.76 0.11 0.13
Matches are distributed among these distances:
27 7 0.04
28 35 0.17
29 38 0.19
30 114 0.57
31 6 0.03
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.37
Consensus pattern (30 bp):
GGGGTCAAAATGTAATTTTTGAGAAGTTTA
Found at i:8167065 original size:60 final size:59
Alignment explanation
Indices: 8166986--8167203 Score: 208
Period size: 60 Copynumber: 3.7 Consensus size: 59
8166976 TGGATGTTCG
*
8166986 GGGTCAAAATGTAATTTTT-GAGAAGTTTAGGGGTTAAAATGTAATTTTTGGAAAATTATA
1 GGGTCAAAATGTAATTTTTGGA-AAGTTTAGGGGTCAAAATGTAATTTTT-GAAAATTATA
* * * * *
8167046 GGGTTAAAATGCAATTTTTGGAAAGTTTGGGGGTCAAAATGT-ATTTTTGCAAATTTTA
1 GGGTCAAAATGTAATTTTTGGAAAGTTTAGGGGTCAAAATGTAATTTTTGAAAATTATA
* * * * * * * **
8167104 AGGTCAAAATTTAATATTTGGAAAGTTCAAGGGTCAAAATATAATTTTTGAGAAGTTCGA
1 GGGTCAAAATGTAATTTTTGGAAAGTTTAGGGGTCAAAATGTAATTTTTGA-AAATTATA
* * * *
8167164 GGATTAAAATGTAATTTTT-GAGAAGTTTAGGAGTTAAAAT
1 GGGTCAAAATGTAATTTTTGGA-AAGTTTAGGGGTCAAAAT
8167204 AGGATTTTTA
Statistics
Matches: 126, Mismatches: 28, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
58 41 0.33
59 15 0.12
60 68 0.54
61 2 0.02
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (59 bp):
GGGTCAAAATGTAATTTTTGGAAAGTTTAGGGGTCAAAATGTAATTTTTGAAAATTATA
Found at i:8167160 original size:88 final size:88
Alignment explanation
Indices: 8166933--8167193 Score: 248
Period size: 88 Copynumber: 3.0 Consensus size: 88
8166923 TGCTCGGGGG
* * * * *
8166933 CAAAATGGTAATTTTTGG-ATGTTCGAGGGTAAAATGATAA-TTTTGGATG-TTCGGGGTCAAAA
1 CAAAAT-GTAATATTTGGAAAGTTCAAGGGTAAAAT-ATAATTTTTGGAAGTTTGGGGGTCAAAA
*
8166995 TGTAATTTTTGAGAAGTTTAGGGGT
64 TGTAATTTTTGAGAAGTTTAGAGGT
* * * **
8167020 TAAAATGTAATTTTTGGAAAATT-ATAGGGTTAAAATGCAATTTTTGGAAAGTTTGGGGGTCAAA
1 CAAAATGTAATATTTGGAAAGTTCA-AGGG-TAAAATATAATTTTTGG-AAGTTTGGGGGTCAAA
*
8167084 ATGT-ATTTTTGCA-AATTTTA-AGGT
63 ATGTAATTTTTG-AGAAGTTTAGAGGT
* * * * *
8167108 CAAAATTTAATATTTGGAAAGTTCAAGGGTCAAAATATAATTTTTGAGAAGTTCGAGGATTAAAA
1 CAAAATGTAATATTTGGAAAGTTCAAGGGT-AAAATATAATTTTTG-GAAGTTTGGGGGTCAAAA
8167173 TGTAATTTTTGAGAAGTTTAG
64 TGTAATTTTTGAGAAGTTTAG
8167194 GAGTTAAAAT
Statistics
Matches: 140, Mismatches: 21, Indels: 23
0.76 0.11 0.12
Matches are distributed among these distances:
86 11 0.08
87 15 0.11
88 68 0.49
89 30 0.21
90 16 0.11
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (88 bp):
CAAAATGTAATATTTGGAAAGTTCAAGGGTAAAATATAATTTTTGGAAGTTTGGGGGTCAAAATG
TAATTTTTGAGAAGTTTAGAGGT
Found at i:8167203 original size:118 final size:119
Alignment explanation
Indices: 8166987--8167212 Score: 262
Period size: 118 Copynumber: 1.9 Consensus size: 119
8166977 GGATGTTCGG
* * * * * * *
8166987 GGTCAAAATGTAATTTTTGAGAAGTTTAGGGGTTAAAATGTAATTTTTGGAAAATTATAGGGTTA
1 GGTCAAAATGTAATTTTGGAGAAGTTCAAGGGTCAAAATATAATTTTTGGAAAATTAGAGGATTA
* * *
8167052 AAATGCAATTTTTGGAAAGTTTGGGGGTCAAAAT-GTATTTTTGCAAATTTTAA
66 AAATGCAATTTTTGGAAAGTTTAGGAGTCAAAATAGGATTTTTGCAAATTTTAA
* * *
8167105 GGTCAAAATTTAATATTTGGA-AAGTTCAAGGGTCAAAATATAATTTTT-GAGAAGTTCGAGGAT
1 GGTCAAAATGTAAT-TTTGGAGAAGTTCAAGGGTCAAAATATAATTTTTGGA-AAATTAGAGGAT
* *
8167168 TAAAATGTAATTTTT-GAGAAGTTTAGGAGTTAAAATAGGATTTTT
64 TAAAATGCAATTTTTGGA-AAGTTTAGGAGTCAAAATAGGATTTTT
8167213 AAAGAAAAAA
Statistics
Matches: 89, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
117 4 0.04
118 73 0.82
119 12 0.13
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (119 bp):
GGTCAAAATGTAATTTTGGAGAAGTTCAAGGGTCAAAATATAATTTTTGGAAAATTAGAGGATTA
AAATGCAATTTTTGGAAAGTTTAGGAGTCAAAATAGGATTTTTGCAAATTTTAA
Found at i:8169360 original size:29 final size:29
Alignment explanation
Indices: 8169330--8169459 Score: 79
Period size: 30 Copynumber: 4.4 Consensus size: 29
8169320 ATCGGGGTTA
*
8169330 AAAATGG-GATTTAGGGAAGTTTGGGGGT
1 AAAATGGTAATTTAGGGAAGTTTGGGGGT
** *
8169358 AAAATGGTAATTTTTGGAAGTTTTGGGGT
1 AAAATGGTAATTTAGGGAAGTTTGGGGGT
* ** **
8169387 CAAAAT-ATAATTTTAGAAAAGTTTTAGGGT
1 -AAAATGGTAA-TTTAGGGAAGTTTGGGGGT
* * *
8169417 CAAAAT-GTAATTTTGGAAAAGTTTCGGGGTT
1 -AAAATGGTAATTTAGG-GAAGTTT-GGGGGT
8169448 AAAAT-GTAATTT
1 AAAATGGTAATTT
8169460 TGATAAAGTT
Statistics
Matches: 81, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
28 7 0.09
29 24 0.30
30 47 0.58
31 3 0.04
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (29 bp):
AAAATGGTAATTTAGGGAAGTTTGGGGGT
Found at i:8169373 original size:59 final size:57
Alignment explanation
Indices: 8169178--8169371 Score: 183
Period size: 59 Copynumber: 3.3 Consensus size: 57
8169168 TGGGTTTTTA
*
8169178 GGGGTAAAATGGTAATTTT-GTGAAATCGGGGCTAAAAATGGAATTTGGAAAGTTTG
1 GGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTGGAAAGTTTG
* ** * ** * * *
8169234 GGGAATAAAATGGTAAATTTTGGCAAAAACAAGGTCAAAAATGAAATTTTGGAAAGTTCG
1 GGG-GTAAAATGGT-AATTTTGGTGAAATCGGGGTTAAAAATGGAA-TTTGGAAAGTTTG
* * * * * * *
8169294 GAGGCAAAACGATAAGTTTTGGTGGAATCGGGGTTAAAAATGGGATTTAGGGAAGTTTG
1 GGGGTAAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAAATGGAATTT-GGAAAGTTTG
8169353 GGGGTAAAATGGTAATTTT
1 GGGGTAAAATGGTAATTTT
8169372 TGGAAGTTTT
Statistics
Matches: 102, Mismatches: 30, Indels: 10
0.72 0.21 0.07
Matches are distributed among these distances:
56 3 0.03
57 9 0.09
58 15 0.15
59 61 0.60
60 14 0.14
ACGTcount: A:0.37, C:0.05, G:0.30, T:0.28
Consensus pattern (57 bp):
GGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTGGAAAGTTTG
Found at i:8169383 original size:30 final size:29
Alignment explanation
Indices: 8169344--8169607 Score: 193
Period size: 30 Copynumber: 8.9 Consensus size: 29
8169334 TGGGATTTAG
*
8169344 GGAAGTTTGGGGGT-AAAATGGTAATTTTT
1 GGAAGTTTTGGGGTCAAAAT-GTAATTTTT
* *
8169373 GGAAGTTTTGGGGTCAAAATATAATTTTA
1 GGAAGTTTTGGGGTCAAAATGTAATTTTT
* *
8169402 GAAAAGTTTTAGGGTCAAAATGTAA-TTTT
1 G-GAAGTTTTGGGGTCAAAATGTAATTTTT
* *
8169431 GGAAAAGTTTCGGGGTTAAAATGTAA-TTTT
1 GG--AAGTTTTGGGGTCAAAATGTAATTTTT
* * *
8169461 GATAAAGTTTCGGGGTCAAAATATAA-TTTT
1 G--GAAGTTTTGGGGTCAAAATGTAATTTTT
* *
8169491 GGAAAATTTTTGGGGTC--AATATAA-TTTT
1 GG--AAGTTTTGGGGTCAAAATGTAATTTTT
* *
8169519 GGAAAATTTTTGGGGTCAAAATGTAATTTTA
1 GG--AAGTTTTGGGGTCAAAATGTAATTTTT
* * * *
8169550 GAAAAGTTTTGGGGTTAAAATATAA-TTTA
1 G-GAAGTTTTGGGGTCAAAATGTAATTTTT
8169579 GGAAAAGTTTTGGGGTCAAAATGTAATTT
1 GG--AAGTTTTGGGGTCAAAATGTAATTT
8169608 CTAGACAATT
Statistics
Matches: 194, Mismatches: 26, Indels: 28
0.78 0.10 0.11
Matches are distributed among these distances:
28 28 0.14
29 30 0.15
30 130 0.67
31 6 0.03
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (29 bp):
GGAAGTTTTGGGGTCAAAATGTAATTTTT
Found at i:8169452 original size:60 final size:60
Alignment explanation
Indices: 8169346--8169607 Score: 331
Period size: 60 Copynumber: 4.4 Consensus size: 60
8169336 GGATTTAGGG
* *
8169346 AAGTTTGGGGGT-AAAATGGTAATTTTTGG--AAGTTTTGGGGTCAAAATATAATTTTAGAA
1 AAGTTTTGGGGTCAAAAT-GTAA-TTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTAGAA
* * *
8169405 AAGTTTTAGGGTCAAAATGTAATTTTGGAAAAGTTTCGGGGTTAAAATGTAATTTT-GATA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTAGA-A
* * * * *
8169465 AAGTTTCGGGGTCAAAATATAATTTTGGAAAATTTTTGGGG-T-CAATATAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTAGAA
* *
8169523 AATTTTTGGGGTCAAAATGTAATTTTAGAAAAGTTTTGGGGTTAAAATATAA-TTTAGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTA-GAA
8169583 AAGTTTTGGGGTCAAAATGTAATTT
1 AAGTTTTGGGGTCAAAATGTAATTT
8169608 CTAGACAATT
Statistics
Matches: 175, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
58 53 0.30
59 23 0.13
60 99 0.57
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (60 bp):
AAGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTAGAA
Found at i:8169452 original size:118 final size:117
Alignment explanation
Indices: 8169321--8169607 Score: 355
Period size: 118 Copynumber: 2.4 Consensus size: 117
8169311 TTTGGTGGAA
** * *
8169321 TCGGGGTTAAAAATGGGATTTAGGGAAGTTTGGGGGT-AAAATGGTAATTTTTGG-AAGTTTTGG
1 TCGGGGTT-AAAATGTAATTTAGGAAAGTTTCGGGGTCAAAAT-GTAATTTTTGGAAAGTTTTGG
*
8169384 GGTCAAAATATAATTTTAGAAAAGTTTTAGGGTCAAAATGTAATTTTGGAAAAGTT
64 GGTC--AATATAATTTTAGAAAAGTTTTAGGGTCAAAATGTAATTTTAGAAAAGTT
* * * *
8169440 TCGGGGTTAAAATGTAATTTTGATAAAGTTTCGGGGTCAAAATATAA-TTTTGGAAAATTTTTGG
1 TCGGGGTTAAAATGTAATTTAG-GAAAGTTTCGGGGTCAAAATGTAATTTTTGG-AAAGTTTTGG
* * *
8169504 GGTCAATATAATTTTGGAAAATTTTTGGGGTCAAAATGTAATTTTAGAAAAGTT
64 GGTCAATATAATTTTAGAAAAGTTTTAGGGTCAAAATGTAATTTTAGAAAAGTT
* * *
8169558 TTGGGGTTAAAATATAATTTAGGAAAAGTTTTGGGGTCAAAATGTAATTT
1 TCGGGGTTAAAATGTAATTTAGG-AAAGTTTCGGGGTCAAAATGTAATTT
8169608 CTAGACAATT
Statistics
Matches: 144, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
118 103 0.72
119 24 0.17
120 17 0.12
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.37
Consensus pattern (117 bp):
TCGGGGTTAAAATGTAATTTAGGAAAGTTTCGGGGTCAAAATGTAATTTTTGGAAAGTTTTGGGG
TCAATATAATTTTAGAAAAGTTTTAGGGTCAAAATGTAATTTTAGAAAAGTT
Found at i:8171136 original size:6 final size:6
Alignment explanation
Indices: 8171127--8171241 Score: 100
Period size: 6 Copynumber: 19.8 Consensus size: 6
8171117 ATTTTTAATG
* ** * *
8171127 TTAAAT TTAATAT TTTAAT TTTTAT TTAAAT TTAAAT TCAAA- GTAAAT
1 TTAAAT TTAA-AT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
8171175 TTAAAT AATTAAAT TT-AAT TTAAA- ATAAAT TTAAAT TTAAA- -TAAAT
1 TTAAAT --TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
8171221 TTAAAT TTAAA- -TAAAT TTAAA
1 TTAAAT TTAAAT TTAAAT TTAAA
8171242 ATCAATTTAA
Statistics
Matches: 89, Mismatches: 10, Indels: 20
0.75 0.08 0.17
Matches are distributed among these distances:
4 8 0.09
5 12 0.13
6 58 0.65
7 5 0.06
8 6 0.07
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (6 bp):
TTAAAT
Found at i:8171205 original size:16 final size:16
Alignment explanation
Indices: 8171153--8171241 Score: 121
Period size: 16 Copynumber: 5.6 Consensus size: 16
8171143 AATTTTTATT
*
8171153 TAAATTTAAATTCAAA
1 TAAATTTAAATTTAAA
*
8171169 GTAAATTTAAA--TAAT
1 -TAAATTTAAATTTAAA
8171184 TAAATTT-AATTTAAAA
1 TAAATTTAAATTT-AAA
8171200 TAAATTTAAATTTAAA
1 TAAATTTAAATTTAAA
8171216 TAAATTTAAATTTAAA
1 TAAATTTAAATTTAAA
8171232 TAAATTTAAA
1 TAAATTTAAA
8171242 ATCAATTTAA
Statistics
Matches: 65, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
13 2 0.03
14 7 0.11
15 3 0.05
16 38 0.58
17 15 0.23
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (16 bp):
TAAATTTAAATTTAAA
Found at i:8171210 original size:10 final size:11
Alignment explanation
Indices: 8171150--8171251 Score: 81
Period size: 11 Copynumber: 9.5 Consensus size: 11
8171140 TTTAATTTTT
8171150 ATTTAAATTTAA
1 ATTTAAA-TTAA
* *
8171162 ATTCAAAGTAA
1 ATTTAAATTAA
8171173 ATTTAAA-T-A
1 ATTTAAATTAA
*
8171182 A-TTAAATTTA
1 ATTTAAATTAA
*
8171192 ATTTAAAATAA
1 ATTTAAATTAA
8171203 ATTTAAATTTAA
1 ATTTAAA-TTAA
8171215 A--TAAATTTAA
1 ATTTAAA-TTAA
8171225 ATTTAAA-TAA
1 ATTTAAATTAA
* *
8171235 ATTTAAAATCA
1 ATTTAAATTAA
8171246 ATTTAA
1 ATTTAA
8171252 CTCTAAATTA
Statistics
Matches: 76, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
8 5 0.07
9 3 0.04
10 23 0.30
11 31 0.41
12 14 0.18
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (11 bp):
ATTTAAATTAA
Found at i:8171954 original size:19 final size:19
Alignment explanation
Indices: 8171930--8171966 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
8171920 GGGATCCAAC
8171930 AACAATTTTGATTACGATA
1 AACAATTTTGATTACGATA
8171949 AACAATTTTGATTACGAT
1 AACAATTTTGATTACGAT
8171967 GGGTGATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.38
Consensus pattern (19 bp):
AACAATTTTGATTACGATA
Found at i:8174844 original size:31 final size:31
Alignment explanation
Indices: 8174792--8174851 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
8174782 ACTAATTTGA
* *
8174792 TTAATTTTAATTTTTATAATTTTTGAATTGG
1 TTAATTTTAATTTTTACAATTTTTAAATTGG
*
8174823 TTAATTTTAGTTCTTT-CAATTTTTAAATT
1 TTAATTTTAATT-TTTACAATTTTTAAATT
8174852 TTAAAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 22 0.88
32 3 0.12
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (31 bp):
TTAATTTTAATTTTTACAATTTTTAAATTGG
Found at i:8176032 original size:4 final size:4
Alignment explanation
Indices: 8176025--8176066 Score: 52
Period size: 4 Copynumber: 10.8 Consensus size: 4
8176015 CAGAGAGAGG
*
8176025 AAGA AAGA AAGA AAGA AA-A AAG- AAGA AAGA GAGGA AAGA AAG
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA -AAGA AAGA AAG
8176067 GAGAAAAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 6 0.18
4 24 0.73
5 3 0.09
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:8176680 original size:47 final size:47
Alignment explanation
Indices: 8176594--8176683 Score: 119
Period size: 47 Copynumber: 1.9 Consensus size: 47
8176584 GGTGGAGATA
* *
8176594 CCATTTTTGTATATAAATATTTATTTTGTAACATTTTGATAAATAAC
1 CCATTTTGGTATATAAATATTTATTTTGTAACATATTGATAAATAAC
* **
8176641 CCATTTTGGTATATAATTA-TTATTTTTGTATTATATTGATAAA
1 CCATTTTGGTATATAAATATTTA-TTTTGTAACATATTGATAAA
8176684 AAATCATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
46 3 0.08
47 34 0.92
ACGTcount: A:0.34, C:0.07, G:0.08, T:0.51
Consensus pattern (47 bp):
CCATTTTGGTATATAAATATTTATTTTGTAACATATTGATAAATAAC
Found at i:8178386 original size:29 final size:29
Alignment explanation
Indices: 8178353--8178604 Score: 139
Period size: 29 Copynumber: 8.7 Consensus size: 29
8178343 TTTGGATACC
*
8178353 CGGGGGCAAAATGGTAATTTTGGTGAAAT
1 CGGGGGTAAAATGGTAATTTTGGTGAAAT
* *** **
8178382 CGGGGTTAAAAATGG-AATTTTTCAGAGTT
1 CGGGGGT-AAAATGGTAATTTTGGTGAAAT
*
8178411 CGGGGGTAAAATGGTAATTTTGGGTGGAAT
1 CGGGGGTAAAATGGTAATTTT-GGTGAAAT
* * *
8178441 CGAGGTTAAAATGG-AA-TTT-G-GAATGTT
1 CGGGGGTAAAATGGTAATTTTGGTGAA--AT
**
8178468 TAGGGGTAAAATGGTAATTTTGGTGAAAT
1 CGGGGGTAAAATGGTAATTTTGGTGAAAT
* * * *
8178497 CGAGGTTAAAATGG-AATTTT--AGAAGGTT
1 CGGGGGTAAAATGGTAATTTTGGTGAA--AT
*
8178525 CGAGGGTAAAATGGTAATTTTTGGTGAAAT
1 CGGGGGTAAAATGGTAA-TTTTGGTGAAAT
* * * *
8178555 CGGGGTTAAAAATGG-AATCTT--AGAAGGTT
1 CGGGGGT-AAAATGGTAATTTTGGTGAA--AT
8178584 CGGGGGTAAAATGGTAATTTT
1 CGGGGGTAAAATGGTAATTTT
8178605 TGGAAGTTTC
Statistics
Matches: 165, Mismatches: 39, Indels: 38
0.68 0.16 0.16
Matches are distributed among these distances:
25 2 0.01
26 4 0.02
27 14 0.08
28 39 0.24
29 59 0.36
30 34 0.21
31 10 0.06
32 3 0.02
ACGTcount: A:0.32, C:0.04, G:0.32, T:0.32
Consensus pattern (29 bp):
CGGGGGTAAAATGGTAATTTTGGTGAAAT
Found at i:8178585 original size:59 final size:58
Alignment explanation
Indices: 8178360--8178607 Score: 319
Period size: 59 Copynumber: 4.3 Consensus size: 58
8178350 ACCCGGGGGC
* *
8178360 AAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAAATGGAATTTTTCAG-A-GTTCGGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTT-AAAATGGAA-TTTT-AGAAGGTTCGAGGGT
* * * * *
8178418 AAAATGGTAATTTTGGGTGGAATCGAGGTTAAAATGGAA-TTTGGAATGTT-TAGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAATGGAATTTTAGAAGGTTCGA-GGGT
8178475 AAAATGGTAA-TTTTGGTGAAATCGAGGTTAAAATGGAATTTTAGAAGGTTCGAGGGT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAATGGAATTTTAGAAGGTTCGAGGGT
* * *
8178532 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATCTTAGAAGGTTCGGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTT-AAAATGGAATTTTAGAAGGTTCGAGGGT
8178591 AAAATGGTAATTTTTGG
1 AAAATGGTAATTTTTGG
8178608 AAGTTTCGGG
Statistics
Matches: 168, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
55 1 0.01
56 30 0.18
57 40 0.24
58 38 0.23
59 59 0.35
ACGTcount: A:0.33, C:0.04, G:0.31, T:0.33
Consensus pattern (58 bp):
AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAATGGAATTTTAGAAGGTTCGAGGGT
Found at i:8178618 original size:29 final size:28
Alignment explanation
Indices: 8178355--8178632 Score: 118
Period size: 29 Copynumber: 9.6 Consensus size: 28
8178345 TGGATACCCG
* * *
8178355 GGGGCAAAATGGTAATTTTGGTGAA-ATC
1 GGGGTAAAATGGTAATTTTTG-GAAGTTC
*
8178383 GGGGTTAAAAATGG-AATTTTT-CAGAGTTC
1 GGGG-T-AAAATGGTAATTTTTGGA-AGTTC
8178412 GGGGGTAAAATGGTAATTTTGGGTGGAA--TC
1 -GGGGTAAAATGGTAATTTT---TGGAAGTTC
* *
8178442 GAGGTTAAAATGG-AA--TTTGGAATGTTTA
1 G-GGGTAAAATGGTAATTTTTGGAA-G-TTC
* *
8178470 GGGGTAAAATGGTAATTTTGGTGAA-ATC
1 GGGGTAAAATGGTAATTTTTG-GAAGTTC
* *
8178498 GAGGTTAAAATGG-AA-TTTTAGAAGGTTC
1 G-GGGTAAAATGGTAATTTTTGGAA-GTTC
*
8178526 GAGGGTAAAATGGTAATTTTTGGTGAA-ATC
1 G-GGGTAAAATGGTAATTTTT-G-GAAGTTC
* *
8178556 GGGGTTAAAAATGG-AA-TCTTAGAAGGTTC
1 GGGG-T-AAAATGGTAATTTTTGGAA-GTTC
8178585 GGGGGTAAAATGGTAATTTTTGGAAGTTTC
1 -GGGGTAAAATGGTAATTTTTGGAAG-TTC
*
8178615 GGGGTCAGAAT-GTAATTT
1 GGGGT-AAAATGGTAATTT
8178633 CCTAAAATTT
Statistics
Matches: 191, Mismatches: 24, Indels: 69
0.67 0.08 0.24
Matches are distributed among these distances:
24 5 0.03
26 3 0.02
27 19 0.10
28 41 0.21
29 54 0.28
30 53 0.28
31 10 0.05
32 5 0.03
33 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.32, T:0.32
Consensus pattern (28 bp):
GGGGTAAAATGGTAATTTTTGGAAGTTC
Found at i:8178619 original size:59 final size:57
Alignment explanation
Indices: 8178353--8178604 Score: 339
Period size: 58 Copynumber: 4.4 Consensus size: 57
8178343 TTTGGATACC
*
8178353 CGGGGGCAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTTTCAG-A-GTT
1 CGGGGGTAAAATGGTAATTTTGGTGAAATCGGGGTT-AAAATGGAA-TTTT-AGAAGGTT
* * * *
8178411 CGGGGGTAAAATGGTAATTTTGGGTGGAATCGAGGTTAAAATGGAA-TTTGGAATGTT
1 CGGGGGTAAAATGGTAATTTT-GGTGAAATCGGGGTTAAAATGGAATTTTAGAAGGTT
** *
8178468 TAGGGGTAAAATGGTAATTTTGGTGAAATCGAGGTTAAAATGGAATTTTAGAAGGTT
1 CGGGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAATGGAATTTTAGAAGGTT
* *
8178525 CGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATCTTAGAAGGTT
1 CGGGGGTAAAATGGTAA-TTTTGGTGAAATCGGGGTT-AAAATGGAATTTTAGAAGGTT
8178584 CGGGGGTAAAATGGTAATTTT
1 CGGGGGTAAAATGGTAATTTT
8178605 TGGAAGTTTC
Statistics
Matches: 173, Mismatches: 15, Indels: 12
0.87 0.08 0.06
Matches are distributed among these distances:
55 1 0.01
56 27 0.16
57 45 0.26
58 51 0.29
59 49 0.28
ACGTcount: A:0.32, C:0.04, G:0.32, T:0.32
Consensus pattern (57 bp):
CGGGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAATGGAATTTTAGAAGGTT
Found at i:8178923 original size:161 final size:162
Alignment explanation
Indices: 8178756--8179217 Score: 750
Period size: 160 Copynumber: 2.9 Consensus size: 162
8178746 TTAAATCGTA
* * * *
8178756 AATCTTGAAAAATTCTTAGGCTAATTTTGTAATTAAGTAAAAGTTAATTTAGGGATTAAATTAAA
1 AATCTTGAAAAATTCTTGGGCCAATTTTGTAATTAAATAAAAGTTGATTTAGGGATTAAATTAAA
*
8178821 ATAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCTAAAAAAT-ACACGTGGCAGCCTCTG
66 ACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCTAAAAAATGACACGTGGCAGCCTCTG
8178885 GTGCAGTCAAACAGTCAAAGGACGAATTTATG
131 GTGCAGTCAAACAGTCAAAGGACGAATTTATG
*
8178917 AATCTTGAAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTAGGGATTAAATTAAA
1 AATCTTGAAAAATTCTTGGGCCAATTTTGTAATTAAATAAAAGTTGATTTAGGGATTAAATTAAA
* *
8178982 ACAAATTAAAAATGTCAGGGACTAAATGCATAAATGAGCT--AAAATGACAGGTGGCAGCCTCTG
66 ACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCTAAAAAATGACACGTGGCAGCCTCTG
* * *
8179045 GTTCAATCAACCAGTCAAAGGACGAATTTATG
131 GTGCAGTCAAACAGTCAAAGGACGAATTTATG
* * *
8179077 AACCTTGAAAAATGCTTGGGCCAATTTTGTAATTAAACAAAAGTTGATTTAGGGATTAAATTAAA
1 AATCTTGAAAAATTCTTGGGCCAATTTTGTAATTAAATAAAAGTTGATTTAGGGATTAAATTAAA
* * *
8179142 ACAAATTAAAAATGTCGGGGACTAAATGCATAAATAAACCAAAAAATGACACGTGGCAGCCTCTG
66 ACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCTAAAAAATGACACGTGGCAGCCTCTG
8179207 GTGCAGTCAAA
131 GTGCAGTCAAA
8179218 GGACTAAATT
Statistics
Matches: 275, Mismatches: 23, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
159 5 0.02
160 142 0.52
161 98 0.36
162 30 0.11
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (162 bp):
AATCTTGAAAAATTCTTGGGCCAATTTTGTAATTAAATAAAAGTTGATTTAGGGATTAAATTAAA
ACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCTAAAAAATGACACGTGGCAGCCTCTG
GTGCAGTCAAACAGTCAAAGGACGAATTTATG
Found at i:8179695 original size:25 final size:25
Alignment explanation
Indices: 8179667--8179723 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 25
8179657 TCTCTTTCGA
8179667 TTTTTGGTCTCTTTAGTTTCTC-TCT
1 TTTTTGGT-TCTTTAGTTTCTCTTCT
*
8179692 TTTTCT-GTTCTTTAGTTTTTCTTCT
1 TTTT-TGGTTCTTTAGTTTCTCTTCT
8179717 TATTTTG
1 T-TTTTG
8179724 CCCCTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
24 12 0.44
25 11 0.41
26 4 0.15
ACGTcount: A:0.05, C:0.16, G:0.11, T:0.68
Consensus pattern (25 bp):
TTTTTGGTTCTTTAGTTTCTCTTCT
Found at i:8180866 original size:12 final size:13
Alignment explanation
Indices: 8180849--8180877 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8180839 TTGACTTATT
8180849 TAATTT-AATTTA
1 TAATTTAAATTTA
8180861 TAATTTAAATTTA
1 TAATTTAAATTTA
8180874 TAAT
1 TAAT
8180878 AAACTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TAATTTAAATTTA
Found at i:8180885 original size:17 final size:16
Alignment explanation
Indices: 8180860--8180934 Score: 59
Period size: 17 Copynumber: 4.8 Consensus size: 16
8180850 AATTTAATTT
*
8180860 ATAATTTAAATTTATA
1 ATAAATTAAATTTATA
8180876 ATAAACTTAAATTT-TA
1 ATAAA-TTAAATTTATA
* *
8180892 TGTAAATTTAAATTTAAA
1 -ATAAA-TTAAATTTATA
*
8180910 ATAAATTTAA-TT-TA
1 ATAAATTAAATTTATA
8180924 A-AAATTAAATT
1 ATAAATTAAATT
8180935 ATATCCCATT
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
13 7 0.15
14 3 0.06
15 2 0.04
16 10 0.21
17 24 0.51
18 1 0.02
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (16 bp):
ATAAATTAAATTTATA
Found at i:8181321 original size:76 final size:76
Alignment explanation
Indices: 8181193--8181596 Score: 612
Period size: 76 Copynumber: 5.3 Consensus size: 76
8181183 TCAAGGTTTT
* *
8181193 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTTAATTTCAAGCG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGCG
8181258 GATAGGAAAAG
66 GATAGGAAAAG
* ** * * *
8181269 ATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGCG
* *
8181334 GATATGAAATG
66 GATAGGAAAAG
*
8181345 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGCG
8181410 GATAGGAAAAG
66 GATAGGAAAAG
* ** * * *
8181421 ATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGCG
* *
8181486 GATATGAAATG
66 GATAGGAAAAG
8181497 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGA-TGTGTTATCCAACTCTACTTCAATTTCAAGC
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACT-TGTTATCCAACTCTACTTCAATTTCAAGC
8181561 GGATAGGAAAAG
65 GGATAGGAAAAG
8181573 ATCTTTGCTCTTACTTCAATTTCA
1 ATC-TTGCTCTTACTTCAATTTCA
8181597 AGCGGATGAC
Statistics
Matches: 290, Mismatches: 36, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
75 1 0.00
76 269 0.93
77 20 0.07
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (76 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGCG
GATAGGAAAAG
Found at i:8181621 original size:108 final size:107
Alignment explanation
Indices: 8181500--8181702 Score: 361
Period size: 108 Copynumber: 1.9 Consensus size: 107
8181490 TGAAATGATC
* * *
8181500 TTGCTCTTACTTCAATTTCAGAGATAAAGATGTGTTATCCAACTCTACTTCAATTTCAAGCGGAT
1 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTCAATTTCAAGCGGAT
8181565 AGGAAAAGATCTTTGCTCTTACTTCAATTTCAAGCGGATGACG
66 AGGAAAAGATC-TTGCTCTTACTTCAATTTCAAGCGGATGACG
*
8181608 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTTAATTTCAAGCGGAT
1 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTCAATTTCAAGCGGAT
8181673 AGGAAAAGATCTTGCTCTTACTTCAATTTC
66 AGGAAAAGATCTTGCTCTTACTTCAATTTC
8181703 GGAGATAAAG
Statistics
Matches: 91, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
107 19 0.21
108 72 0.79
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (107 bp):
TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTCAATTTCAAGCGGAT
AGGAAAAGATCTTGCTCTTACTTCAATTTCAAGCGGATGACG
Found at i:8181627 original size:152 final size:152
Alignment explanation
Indices: 8181193--8181595 Score: 779
Period size: 152 Copynumber: 2.6 Consensus size: 152
8181183 TCAAGGTTTT
*
8181193 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTTAATTTCAAGCG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCG
8181258 GATAGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTC
66 GATAGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTC
8181323 AATTTCAAGAGGATATGAAATG
131 AATTTCAAGAGGATATGAAATG
8181345 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCG
8181410 GATAGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTC
66 GATAGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTC
8181475 AATTTCAAGAGGATATGAAATG
131 AATTTCAAGAGGATATGAAATG
*
8181497 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGATGTGTTATCCAACTCTACTTCAATTTCAAGCG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCG
8181562 GATAGGAAAAGATCTTTGCTCTTACTTCAATTTC
66 GATAGGAAAAGATC-TTGCTCTTACTTCAATTTC
8181596 AAGCGGATGA
Statistics
Matches: 248, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
152 229 0.92
153 19 0.08
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (152 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCG
GATAGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTC
AATTTCAAGAGGATATGAAATG
Found at i:8181669 original size:260 final size:259
Alignment explanation
Indices: 8181348--8181855 Score: 901
Period size: 260 Copynumber: 2.0 Consensus size: 259
8181338 TGAAATGATC
* *
8181348 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGAT
1 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTCAATTTCAAGCGGAT
8181413 AGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAAT
66 AGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAAT
**
8181478 TTCAAGAGGATATGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGA-TGTGTTATCCAA
131 TTCAAGAGGATATGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACT-TAATATCCAA
*
8181542 CTCTACTTCAATTTCAAGCGGATAGGAAAAGATCTTTGCTCTTACTTCAATTTCAAGCGGATGAC
195 CTCTACTTCAATTTCAAGAGGATAGGAAAAGATC-TTGCTCTTACTTCAATTTCAAGCGGATGAC
8181607 G
259 G
*
8181608 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTTAATTTCAAGCGGAT
1 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTCAATTTCAAGCGGAT
8181673 AGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAAT
66 AGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAAT
*
8181738 TTCAAGAGTATATGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTAATATCCAAC
131 TTCAAGAGGATATGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTAATATCCAAC
* * *
8181803 TTTACTTCAATTTCAAGAGGATATGAAATGATCTTGCTCTTACTTCAATTTCA
196 TCTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCA
8181856 GAGAAAAACG
Statistics
Matches: 237, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
259 20 0.08
260 216 0.91
261 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (259 bp):
TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTCAATTTCAAGCGGAT
AGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAAT
TTCAAGAGGATATGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTAATATCCAAC
TCTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCAAGCGGATGACG
Found at i:8181686 original size:184 final size:183
Alignment explanation
Indices: 8181424--8181779 Score: 498
Period size: 184 Copynumber: 1.9 Consensus size: 183
8181414 GGAAAAGATC
* * ** * *
8181424 TTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAATTTCAAGAGGAT
1 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCAATATCCAACTCTACTTCAATTTCAAGAGGAT
* * **
8181489 ATGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGA-TGTGTTATCCAACTCTACTTCAA
66 AGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACT-TAATATCCAACTCTACTTCAA
*
8181553 TTTCAAGCGGATAGGAAAAGATCTTTGCTCTTACTTCAATTTCAAGCGGATGACG
130 TTTCAAGAGGATAGGAAAAGATC-TTGCTCTTACTTCAATTTCAAGCGGATGACG
** * *
8181608 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTTAATTTCAAGCGGAT
1 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCAATATCCAACTCTACTTCAATTTCAAGAGGAT
* * *
8181673 AGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAAT
66 AGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTAATATCCAACTCTACTTCAAT
* * *
8181738 TTCAAGAGTATATGAAATGATCTTGCTCTTACTTCAATTTCA
131 TTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCA
8181780 GAGATAAAGA
Statistics
Matches: 150, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
183 20 0.13
184 129 0.86
185 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (183 bp):
TTGCTCTTACTTCAACTTCAGAGATAAAGACGCAATATCCAACTCTACTTCAATTTCAAGAGGAT
AGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTAATATCCAACTCTACTTCAAT
TTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCAAGCGGATGACG
Found at i:8181691 original size:76 final size:76
Alignment explanation
Indices: 8181608--8181988 Score: 523
Period size: 76 Copynumber: 5.0 Consensus size: 76
8181598 GCGGATGACG
* *** * * *
8181608 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTTAATTTCAAGCGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAACTTTACTTCAATTTCAAGAGGAT
* *
8181673 AGGAAAAGATC
66 ATGAAATGATC
* * * *
8181684 TTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAATTTCAAGAGTAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAACTTTACTTCAATTTCAAGAGGAT
8181749 ATGAAATGATC
66 ATGAAATGATC
*
8181760 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTAATATCCAACTTTACTTCAATTTCAAGAGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAACTTTACTTCAATTTCAAGAGGAT
8181825 ATGAAATGATC
66 ATGAAATGATC
* *
8181836 TTGCTCTTACTTCAATTTCAGAGA-AAA-ACGTAATATCCAGCTTTACTTTAATTTCAAGAGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAACTTTACTTCAATTTCAAGAGGAT
8181899 ATGAAATGATC
66 ATGAAATGATC
* * ** * * *
8181910 TTACTCTTACTTCAATTTCAGAGATAAAGACATGTTATCTAACTCTACTTCAATTTCAAGCGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAACTTTACTTCAATTTCAAGAGGAT
* *
8181975 AGGAAAAGATC
66 ATGAAATGATC
8181986 TTG
1 TTG
8181989 GTGCGGTCTG
Statistics
Matches: 272, Mismatches: 31, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
74 67 0.25
75 6 0.02
76 199 0.73
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (76 bp):
TTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAACTTTACTTCAATTTCAAGAGGAT
ATGAAATGATC
Found at i:8181732 original size:38 final size:37
Alignment explanation
Indices: 8181690--8181967 Score: 175
Period size: 38 Copynumber: 7.4 Consensus size: 37
8181680 GATCTTGCTC
*
8181690 TTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCT
1 TTACTTCAATTTCAGAGATAAAGAC-TAATATCCAGCT
* **
8181728 TTACTTCAATTTCA-AGAGTATATGA--AATGATCTTGCT
1 TTACTTCAATTTCAGAGA-TA-AAGACTAAT-ATCCAGCT
*
8181765 CTTACTTCAATTTCAGAGATAAAGACTTAATATCCAACT
1 -TTACTTCAATTTCAGAGATAAAGAC-TAATATCCAGCT
* **
8181804 TTACTTCAATTTCAAGAGGAT-ATGA--AATGATCTTGCT
1 TTACTTCAATTTC-AGA-GATAAAGACTAAT-ATCCAGCT
8181841 CTTACTTCAATTTCAGAGA-AAA-ACGTAATATCCAGCT
1 -TTACTTCAATTTCAGAGATAAAGAC-TAATATCCAGCT
* * *
8181878 TTACTTTAATTTCAAGAGGAT-ATGA--AATGATCTTA-CT
1 TTACTTCAATTTC-AGA-GATAAAGACTAAT-ATC-CAGCT
** * *
8181915 CTTACTTCAATTTCAGAGATAAAGACATGTTATCTAACT
1 -TTACTTCAATTTCAGAGATAAAGAC-TAATATCCAGCT
*
8181954 CTACTTCAATTTCA
1 TTACTTCAATTTCA
8181968 AGCGGATAGG
Statistics
Matches: 189, Mismatches: 23, Indels: 56
0.71 0.09 0.21
Matches are distributed among these distances:
35 1 0.01
36 27 0.14
37 40 0.21
38 91 0.48
39 23 0.12
40 7 0.04
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (37 bp):
TTACTTCAATTTCAGAGATAAAGACTAATATCCAGCT
Found at i:8181763 original size:412 final size:410
Alignment explanation
Indices: 8181196--8181987 Score: 1413
Period size: 412 Copynumber: 1.9 Consensus size: 410
8181186 AGGTTTTATC
* *
8181196 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTTAATTTCAAGCGGAT
1 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTTAATTTCAAGCGGAT
8181261 AGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAAT
66 AGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAAT
**
8181326 TTCAAGAGGATATGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAAC
131 TTCAAGAGGATATGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAAC
* * *
8181391 TCTACTTCAATTTCAAGCGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACT
196 TCTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGA-AAA-ACG
*
8181456 TAATATCCAGCTTTACTTCAATTTCAAGAGGATATGAAATGATCTTGCTCTTACTTCAATTTCAG
259 TAATATCCAGCTTTACTTCAATTTCAAGAGGATATGAAATGATCTTACTCTTACTTCAATTTCAG
**
8181521 AGATAAAGATGTGTTATCCAACTCTACTTCAATTTCAAGCGGATAGGAAAAGATCTTTGCTCTTA
324 AGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGCGGATAGGAAAAGATCTTTGCTCTTA
8181586 CTTCAATTTCAAGCGGATGACG
389 CTTCAATTTCAAGCGGATGACG
8181608 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTTAATTTCAAGCGGAT
1 TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTTAATTTCAAGCGGAT
8181673 AGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAAT
66 AGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAAT
* *
8181738 TTCAAGAGTATATGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTAATATCCAAC
131 TTCAAGAGGATATGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAAC
* * *
8181803 TTTACTTCAATTTCAAGAGGATATGAAATGATCTTGCTCTTACTTCAATTTCAGAGAAAAACGTA
196 TCTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGAAAAACGTA
*
8181868 ATATCCAGCTTTACTTTAATTTCAAGAGGATATGAAATGATCTTACTCTTACTTCAATTTCAGAG
261 ATATCCAGCTTTACTTCAATTTCAAGAGGATATGAAATGATCTTACTCTTACTTCAATTTCAGAG
*
8181933 ATAAAGACATGTTATCTAACTCTACTTCAATTTCAAGCGGATAGGAAAAGATCTT
326 ATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGCGGATAGGAAAAGATCTT
8181988 GGTGCGGTCT
Statistics
Matches: 363, Mismatches: 17, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
410 119 0.33
411 3 0.01
412 241 0.66
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (410 bp):
TTGCTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTTAATTTCAAGCGGAT
AGGAAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAAT
TTCAAGAGGATATGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAAC
TCTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGAAAAACGTA
ATATCCAGCTTTACTTCAATTTCAAGAGGATATGAAATGATCTTACTCTTACTTCAATTTCAGAG
ATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGCGGATAGGAAAAGATCTTTGCTCTTACT
TCAATTTCAAGCGGATGACG
Found at i:8181934 original size:150 final size:152
Alignment explanation
Indices: 8181611--8181988 Score: 589
Period size: 150 Copynumber: 2.5 Consensus size: 152
8181601 GATGACGTTG
* ** *
8181611 CTCTTACTTCAACTTCAGAGATAAAGACGCGTTATCCAACTCTACTTTAATTTCAAGCGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGCGGATAGG
* *
8181676 AAAAGATCTTGCTCTTACTTCAATTTCGGAGATAAAGACTTAATATCCAGCTTTACTTCAATTTC
66 AAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAGCTTTACTTCAATTTC
* *
8181741 AAGAGTATATGAAATGATCTTG
131 AAGAGGATATGAAATGATCTTA
* ** * * *
8181763 CTCTTACTTCAATTTCAGAGATAAAGACTTAATATCCAACTTTACTTCAATTTCAAGAGGATATG
1 CTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGCGGATAGG
* *
8181828 AAATGATCTTGCTCTTACTTCAATTTCAGAGA-AAA-ACGTAATATCCAGCTTTACTTTAATTTC
66 AAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAGCTTTACTTCAATTTC
8181891 AAGAGGATATGAAATGATCTTA
131 AAGAGGATATGAAATGATCTTA
*
8181913 CTCTTACTTCAATTTCAGAGATAAAGACATGTTATCTAACTCTACTTCAATTTCAAGCGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGCGGATAGG
8181978 AAAAGATCTTG
66 AAAAGATCTTG
8181989 GTGCGGTCTG
Statistics
Matches: 203, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
150 114 0.56
151 3 0.01
152 86 0.42
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (152 bp):
CTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGCGGATAGG
AAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTAATATCCAGCTTTACTTCAATTTC
AAGAGGATATGAAATGATCTTA
Found at i:8186832 original size:14 final size:15
Alignment explanation
Indices: 8186802--8186835 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8186792 TGTCGTGCTC
*
8186802 TTCTTGTCTCTTTCT
1 TTCTTGTCTATTTCT
8186817 TTCTT-TCTATTTCT
1 TTCTTGTCTATTTCT
8186831 TTCTT
1 TTCTT
8186836 CCTTTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.03, C:0.24, G:0.03, T:0.71
Consensus pattern (15 bp):
TTCTTGTCTATTTCT
Found at i:8194126 original size:29 final size:30
Alignment explanation
Indices: 8194086--8194185 Score: 93
Period size: 29 Copynumber: 3.4 Consensus size: 30
8194076 ACTCGGGGGT
8194086 AAAATGGTAATTTTGGTGAAATCAAGGTTA
1 AAAATGGTAATTTTGGTGAAATCAAGGTTA
* ** *
8194116 AAAATGG-AATTTT-GAGAGTTTAGAGG-T-
1 AAAATGGTAATTTTGGTGAAATCA-AGGTTA
* *
8194143 AAAATGGTAATTTTTGGTGTAATCGAGGTTA
1 AAAATGGTAA-TTTTGGTGAAATCAAGGTTA
8194174 AAAATGG-AATTT
1 AAAATGGTAATTT
8194186 GGAATGTTTG
Statistics
Matches: 54, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
27 7 0.13
28 8 0.15
29 19 0.35
30 13 0.24
31 7 0.13
ACGTcount: A:0.38, C:0.02, G:0.25, T:0.35
Consensus pattern (30 bp):
AAAATGGTAATTTTGGTGAAATCAAGGTTA
Found at i:8194181 original size:58 final size:59
Alignment explanation
Indices: 8194082--8194332 Score: 336
Period size: 58 Copynumber: 4.3 Consensus size: 59
8194072 GGATACTCGG
*
8194082 GGGTAAAATGGTAA-TTTTGGTGAAATCAAGGTTAAAAATGGAATTTT-G-AGAGTTT-A
1 GGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTAGAAG-GTTTGA
* * *
8194138 GAGGTAAAATGGTAATTTTTGGTGTAATCGAGGTTAAAAATGGAA-TTTGGAATGTTTG-
1 G-GGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTAGAAGGTTTGA
* *
8194196 GGGCTAAAATGGTAATTTTTAGTGAAATCGAGGTTAAAAATTGAATTTTAGAAGGTTTGA
1 GGG-TAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTAGAAGGTTTGA
* * *
8194256 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATAGAATTTTAGAAGGTTCGA
1 GGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTAGAAGGTTTGA
*
8194314 GGGTAAAATGGTCATTTTT
1 GGGTAAAATGGTAATTTTT
8194333 AGAAGTTTTG
Statistics
Matches: 174, Mismatches: 13, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
56 1 0.01
57 18 0.10
58 111 0.64
59 41 0.24
60 3 0.02
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTAGAAGGTTTGA
Found at i:8194290 original size:117 final size:115
Alignment explanation
Indices: 8194081--8194334 Score: 336
Period size: 117 Copynumber: 2.2 Consensus size: 115
8194071 TGGATACTCG
*
8194081 GGGGTAAAATGGTAA-TTTTGGTGAAATCAAGGTTAAAAATGGAATTTTGAGAGTTTAGAGGTAA
1 GGGGTAAAATGGTAATTTTTAGTGAAATCAAGGTTAAAAATGGAATTTTGAGAGTTTAGAGGTAA
* * * * *
8194145 AATGGTAATTTTTGGTGTAATCGAGGTTAAAAATGGAA-TTTGGAATGTTT
66 AATGGTAATTTTTGGTGAAATCGAGGTT-AAAATAGAATTTTAGAAGGTTC
* *
8194195 GGGGCTAAAATGGTAATTTTTAGTGAAATCGAGGTTAAAAATTGAATTTT-AGAAGGTTT-GAGG
1 GGGG-TAAAATGGTAATTTTTAGTGAAATCAAGGTTAAAAATGGAATTTTGAG-A-GTTTAGA-G
*
8194258 GTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATAGAATTTTAGAAGGTTC
62 GTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAATAGAATTTTAGAAGGTTC
*
8194312 GAGGGTAAAATGGTCATTTTTAG
1 G-GGGTAAAATGGTAATTTTTAG
8194335 AAGTTTTGGG
Statistics
Matches: 123, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
114 4 0.03
115 13 0.11
116 41 0.33
117 62 0.50
118 3 0.02
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.35
Consensus pattern (115 bp):
GGGGTAAAATGGTAATTTTTAGTGAAATCAAGGTTAAAAATGGAATTTTGAGAGTTTAGAGGTAA
AATGGTAATTTTTGGTGAAATCGAGGTTAAAATAGAATTTTAGAAGGTTC
Found at i:8194335 original size:30 final size:29
Alignment explanation
Indices: 8194241--8194364 Score: 96
Period size: 30 Copynumber: 4.2 Consensus size: 29
8194231 AAAAATTGAA
*
8194241 TTTTAGAAGGTTTGAGGGTAAAATGGTAAT
1 TTTTAGAAGGTTCG-GGGTAAAATGGTAAT
* * *
8194271 TTTTGGTGAA--ATCGGGGTTAAAATAG-AA-
1 TTTT--AGAAGGTTCGGGG-TAAAATGGTAAT
*
8194299 TTTTAGAAGGTTCGAGGGTAAAATGGTCAT
1 TTTTAGAAGGTTCG-GGGTAAAATGGTAAT
* *
8194329 TTTTAGAAGTTTTGGGGTCAAAAT-GTAAT
1 TTTTAGAAGGTTCGGGGT-AAAATGGTAAT
8194358 TTTTAGA
1 TTTTAGA
8194365 CTATTTGGGG
Statistics
Matches: 74, Mismatches: 11, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
26 3 0.04
28 14 0.19
29 24 0.32
30 30 0.41
32 3 0.04
ACGTcount: A:0.32, C:0.03, G:0.27, T:0.37
Consensus pattern (29 bp):
TTTTAGAAGGTTCGGGGTAAAATGGTAAT
Found at i:8194352 original size:58 final size:56
Alignment explanation
Indices: 8194082--8194360 Score: 181
Period size: 58 Copynumber: 4.8 Consensus size: 56
8194072 GGATACTCGG
* * * * * * *
8194082 GGGTAAAATGGTAATTTTGGTGAAATCAAGGTTAAAAATGGAATTTT-GAGAGTTTAGA
1 GGGTAAAATGGTAATTTTTGAGAAATC-GGGGTCAAAAT-GAATTTTAGA-AGGTTCGA
* * * * * * *
8194140 -GGTAAAATGGTAATTTTTGGTGTAATCGAGGTTAAAAATGGAA-TTTGGAATGTTTG-
1 GGGTAAAATGGTAATTTTT-GAGAAATCG-GGGTCAAAAT-GAATTTTAGAAGGTTCGA
* * * *
8194196 GGGCTAAAATGGTAATTTTTAGTGAAATCGAGGTTAAAAATTGAATTTTAGAAGGTTTGA
1 GGG-TAAAATGGTAATTTTT-GAGAAATCG-GGGTCAAAA-TGAATTTTAGAAGGTTCGA
* *
8194256 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATAGAATTTTAGAAGGTTCGA
1 GGGTAAAATGGTAATTTTT-GAGAAATCGGGGTCAAAAT-GAATTTTAGAAGGTTCGA
* * *
8194314 GGGTAAAATGGTCATTTTT-AGAAGTTTTGGGGTCAAAATGTAATTTT
1 GGGTAAAATGGTAATTTTTGAGAA--ATCGGGGTCAAAATG-AATTTT
8194361 TAGACTATTT
Statistics
Matches: 190, Mismatches: 19, Indels: 24
0.82 0.08 0.10
Matches are distributed among these distances:
56 3 0.02
57 28 0.15
58 119 0.63
59 37 0.19
60 3 0.02
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.35
Consensus pattern (56 bp):
GGGTAAAATGGTAATTTTTGAGAAATCGGGGTCAAAATGAATTTTAGAAGGTTCGA
Found at i:8194361 original size:29 final size:30
Alignment explanation
Indices: 8194200--8194364 Score: 100
Period size: 29 Copynumber: 5.6 Consensus size: 30
8194190 TGTTTGGGGC
* *
8194200 TAAAATGGTAATTTTTAGTGAA--ATCGAGGT
1 TAAAATGGTAATTTTTA--GAAGGTTCGAGGG
* *
8194230 TAAAAATTG-AA-TTTTAGAAGGTTTGAGGG
1 T-AAAATGGTAATTTTTAGAAGGTTCGAGGG
* *
8194259 TAAAATGGTAATTTTTGGTGAA--ATCG-GGG
1 TAAAATGGTAATTTTT--AGAAGGTTCGAGGG
*
8194288 TTAAAATAG-AA-TTTTAGAAGGTTCGAGGG
1 -TAAAATGGTAATTTTTAGAAGGTTCGAGGG
* * *
8194317 TAAAATGGTCATTTTTAGAAGTTTTG-GGG
1 TAAAATGGTAATTTTTAGAAGGTTCGAGGG
8194346 TCAAAAT-GTAATTTTTAGA
1 T-AAAATGGTAATTTTTAGA
8194365 CTATTTGGGG
Statistics
Matches: 105, Mismatches: 16, Indels: 29
0.70 0.11 0.19
Matches are distributed among these distances:
26 3 0.03
27 3 0.03
28 20 0.19
29 37 0.35
30 33 0.31
31 6 0.06
32 3 0.03
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.36
Consensus pattern (30 bp):
TAAAATGGTAATTTTTAGAAGGTTCGAGGG
Found at i:8194362 original size:117 final size:116
Alignment explanation
Indices: 8194078--8194364 Score: 277
Period size: 117 Copynumber: 2.5 Consensus size: 116
8194068 TTTTGGATAC
* * * * * *
8194078 TCGGGGGTAAAATGGTAA-TTTTGGTGAAATCAAGGTTAAAAATGGAATTTTGAG-AGTTTAGAG
1 TCGGGGCTAAAATGGTAATTTTTAG-GAAATCGAGGGTAAAAATGTAATTTTTAGAAGTTTAGAG
* * * *
8194141 GTAAAATGGTAATTTTTGGTGTAATCGAGGTTAAAAATGGAATTTGGAATGT
65 GTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATAGAATTTAGAAGGT
* *
8194193 TTGGGGCTAAAATGGTAATTTTTAGTGAAATCGAGGTTAAAAAT-TGAA-TTTTAGAAGGTTT-G
1 TCGGGGCTAAAATGGTAATTTTTAG-GAAATCGAGGGTAAAAATGT-AATTTTTAGAA-GTTTAG
*
8194255 AGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATAGAATTTTAGAAGGT
63 A-GGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATAGAA-TTTAGAAGGT
* * * *
8194310 TCGAGGG-TAAAATGGTCATTTTTA-GAAGTTTTG-GGGTCAAAATGTAATTTTTAGA
1 TCG-GGGCTAAAATGGTAATTTTTAGGAA--ATCGAGGGTAAAAATGTAATTTTTAGA
8194365 CTATTTGGGG
Statistics
Matches: 144, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
115 24 0.17
116 46 0.32
117 71 0.49
118 3 0.02
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.35
Consensus pattern (116 bp):
TCGGGGCTAAAATGGTAATTTTTAGGAAATCGAGGGTAAAAATGTAATTTTTAGAAGTTTAGAGG
TAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATAGAATTTAGAAGGT
Found at i:8194371 original size:29 final size:29
Alignment explanation
Indices: 8194314--8194374 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
8194304 GAAGGTTCGA
* *
8194314 GGGTAAAATGGTCATTTTTAGAAGTTTTG
1 GGGTAAAATGGTAATTTTTAGAACTTTTG
8194343 GGGTCAAAAT-GTAATTTTTAG-ACTATTTG
1 GGGT-AAAATGGTAATTTTTAGAACT-TTTG
8194372 GGG
1 GGG
8194375 ACCTATAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 2 0.07
29 21 0.75
30 5 0.18
ACGTcount: A:0.28, C:0.05, G:0.28, T:0.39
Consensus pattern (29 bp):
GGGTAAAATGGTAATTTTTAGAACTTTTG
Found at i:8194705 original size:162 final size:162
Alignment explanation
Indices: 8194458--8194768 Score: 487
Period size: 162 Copynumber: 1.9 Consensus size: 162
8194448 ATCGTAAATC
* * ** * *
8194458 TTGAAAAATTCTTGGGCTAATTTCGTAATTAAGTAAAAGTTGATTTAGGGATTAAATTAAAATAA
1 TTGAAAAATGCTTGGGCCAATTTCGTAATTAAACAAAAGTTGATATAGGGATTAAATTAAAACAA
* ** * *
8194523 ATTAAAAATATCAGGGACTAAATGCATAAATATGCTAAAAAATGACACATGGCAGCCTCTGGTGC
66 ATTAAAAATATCAAGGACTAAATGCATAAATAAACCAAAAAATGACACATGGCAACCTCTGGTGC
8194588 AGTCAAGCAGTCAAAGGACGAATTTATGAACA
131 AGTCAAGCAGTCAAAGGACGAATTTATGAACA
*
8194620 TTGAAAAATGCTTGGGCCAATTTTGTAATTAAACAAAAGTTGATATAGGGATTAAATTAAAACAA
1 TTGAAAAATGCTTGGGCCAATTTCGTAATTAAACAAAAGTTGATATAGGGATTAAATTAAAACAA
* * *
8194685 ATTAAAAATGTTAAGGACTAAATGCATAAATAAACCAAAAAATGACACGTGGCAACCTCTGGTGC
66 ATTAAAAATATCAAGGACTAAATGCATAAATAAACCAAAAAATGACACATGGCAACCTCTGGTGC
8194750 AGTCAAGCAGTCAAAGGAC
131 AGTCAAGCAGTCAAAGGAC
8194769 TAAATTGAAA
Statistics
Matches: 134, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
162 134 1.00
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26
Consensus pattern (162 bp):
TTGAAAAATGCTTGGGCCAATTTCGTAATTAAACAAAAGTTGATATAGGGATTAAATTAAAACAA
ATTAAAAATATCAAGGACTAAATGCATAAATAAACCAAAAAATGACACATGGCAACCTCTGGTGC
AGTCAAGCAGTCAAAGGACGAATTTATGAACA
Found at i:8195267 original size:25 final size:25
Alignment explanation
Indices: 8195202--8195267 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 25
8195192 CTTTTTCTTC
*
8195202 TTCTCTTTCAATTTTGGTCTCTTTAGT
1 TTCTCTTT-TATTTT-GTCTCTTTAGT
*
8195229 TTCTCTTTT-TTTTGT-TCTTTATT
1 TTCTCTTTTATTTTGTCTCTTTAGT
*
8195252 TTTTCTTCTTATTTTG
1 TTCTCTT-TTATTTTG
8195268 CCCCTTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 13 0.38
24 4 0.12
25 9 0.26
27 8 0.24
ACGTcount: A:0.08, C:0.15, G:0.08, T:0.70
Consensus pattern (25 bp):
TTCTCTTTTATTTTGTCTCTTTAGT
Found at i:8196413 original size:13 final size:14
Alignment explanation
Indices: 8196395--8196479 Score: 52
Period size: 17 Copynumber: 5.7 Consensus size: 14
8196385 GGACTTATTT
8196395 AATTT-AATTTATA
1 AATTTAAATTTATA
8196408 AATTTAAATTTATAATA
1 AATTTAAA-TT-T-ATA
*
8196425 AACTTAAATTTTATGTA
1 AATTTAAA-TTTA--TA
8196442 AATTTAAATTTAAAATA
1 AATTTAAATTT---ATA
8196459 AATTT-AATTTA-A
1 AATTTAAATTTATA
8196471 AA-TTAAATT
1 AATTTAAATT
8196480 ATATCCCATT
Statistics
Matches: 60, Mismatches: 2, Indels: 21
0.72 0.02 0.25
Matches are distributed among these distances:
11 2 0.03
12 7 0.12
13 6 0.10
14 2 0.03
15 3 0.05
16 10 0.17
17 29 0.48
19 1 0.02
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (14 bp):
AATTTAAATTTATA
Found at i:8196431 original size:17 final size:17
Alignment explanation
Indices: 8196405--8196479 Score: 82
Period size: 17 Copynumber: 4.4 Consensus size: 17
8196395 AATTTAATTT
8196405 ATAAATTTAAATTTATA
1 ATAAATTTAAATTTATA
*
8196422 ATAAACTTAAATTT-TA
1 ATAAATTTAAATTTATA
* *
8196438 TGTAAATTTAAATTTAAA
1 -ATAAATTTAAATTTATA
*
8196456 ATAAATTT-AATTTAAA
1 ATAAATTTAAATTTATA
8196472 ATTAAATT
1 A-TAAATT
8196480 ATATCCCATT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
16 11 0.22
17 38 0.76
18 1 0.02
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (17 bp):
ATAAATTTAAATTTATA
Found at i:8196474 original size:7 final size:6
Alignment explanation
Indices: 8196391--8196479 Score: 64
Period size: 6 Copynumber: 15.5 Consensus size: 6
8196381 TTTTGGACTT
* * *
8196391 ATTT-A ATTTAA TTTATAA ATTTAA ATTTATA A--TAA ACTTAA ATTT-T
1 ATTTAA ATTTAA ATT-TAA ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA
* * *
8196437 ATGTAA ATTTAA ATTTAA A-ATAA ATTT-A ATTTAA AATTAA ATT
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATT
8196480 ATATCCCATT
Statistics
Matches: 65, Mismatches: 11, Indels: 15
0.71 0.12 0.16
Matches are distributed among these distances:
4 2 0.03
5 18 0.28
6 38 0.58
7 7 0.11
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (6 bp):
ATTTAA
Found at i:8196478 original size:34 final size:35
Alignment explanation
Indices: 8196391--8196479 Score: 103
Period size: 34 Copynumber: 2.6 Consensus size: 35
8196381 TTTTGGACTT
* *
8196391 ATTTAATTTAATTTATAAATTTAAATTTATAATAA
1 ATTTAATTTAATATATAAATTTAAATTTAAAATAA
* *
8196426 ACTTAAATTT--TATGTAAATTTAAATTTAAAATAA
1 A-TTTAATTTAATATATAAATTTAAATTTAAAATAA
*
8196460 ATTTAATTTAAAAT-TAAATT
1 ATTTAATTTAATATATAAATT
8196480 ATATCCCATT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
33 7 0.16
34 28 0.62
35 3 0.07
36 7 0.16
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (35 bp):
ATTTAATTTAATATATAAATTTAAATTTAAAATAA
Done.