Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 3 of 126
Found at i:691304 original size:12 final size:11
Alignment explanation
Indices: 691281--691324 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 11
691271 TTGTTTTCTT
691281 TTTTTTTCTCAA
1 TTTTTTT-TCAA
691293 TTCTTTTTTCAA
1 TT-TTTTTTCAA
691305 TTTTTTTTTC-A
1 -TTTTTTTTCAA
691316 TTTTTTTTC
1 TTTTTTTTC
691325 TTTTCGACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 9 0.30
11 1 0.03
12 13 0.43
13 7 0.23
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTTTTTCAA
Found at i:691308 original size:24 final size:22
Alignment explanation
Indices: 691281--691324 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
691271 TTGTTTTCTT
691281 TTTTTTTCTCAATTCTTTTTTCAA
1 TTTTTTTCTC-ATT-TTTTTTCAA
*
691305 TTTTTTTTTCATTTTTTTTC
1 TTTTTTTCTCATTTTTTTTC
691325 TTTTCGACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 3 0.16
24 9 0.47
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTTTTCTCATTTTTTTTCAA
Found at i:691328 original size:15 final size:16
Alignment explanation
Indices: 691305--691342 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
691295 CTTTTTTCAA
691305 TTTTTTTTTC-A-TTT
1 TTTTTTTTTCGACTTT
691319 TTTTTCTTTTCGACTTT
1 TTTTT-TTTTCGACTTT
691336 TTTTTTT
1 TTTTTTT
691343 CTAAATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.24
15 5 0.24
16 3 0.14
17 8 0.38
ACGTcount: A:0.05, C:0.11, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTTTTTTTCGACTTT
Found at i:692285 original size:6 final size:6
Alignment explanation
Indices: 692274--692327 Score: 67
Period size: 6 Copynumber: 9.3 Consensus size: 6
692264 TTGCATAATT
* * *
692274 AAAATA AAAATA AAAATA AGAAT- AAAAT- AAAATA AGAATA AAAATG
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
692320 AAAATA AA
1 AAAATA AA
692328 TATACTAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
5 9 0.22
6 32 0.78
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:692285 original size:28 final size:28
Alignment explanation
Indices: 692273--692327 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
692263 ATTGCATAAT
692273 TAAAATAAAAATAAAAATAAGAATAAAA
1 TAAAATAAAAATAAAAATAAGAATAAAA
*
692301 TAAAATAAGAATAAAAATGAA-AATAAA
1 TAAAATAAAAATAAAAAT-AAGAATAAA
692328 TATACTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 23 0.92
29 2 0.08
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.18
Consensus pattern (28 bp):
TAAAATAAAAATAAAAATAAGAATAAAA
Found at i:692307 original size:16 final size:18
Alignment explanation
Indices: 692276--692326 Score: 79
Period size: 16 Copynumber: 2.9 Consensus size: 18
692266 GCATAATTAA
692276 AATAAAAATAAAAATAAG
1 AATAAAAATAAAAATAAG
692294 AAT-AAAAT-AAAATAAG
1 AATAAAAATAAAAATAAG
*
692310 AATAAAAATGAAAATAA
1 AATAAAAATAAAAATAA
692327 ATATACTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.35
17 10 0.32
18 10 0.32
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (18 bp):
AATAAAAATAAAAATAAG
Found at i:692329 original size:22 final size:22
Alignment explanation
Indices: 692273--692327 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 22
692263 ATTGCATAAT
*
692273 TAAAATAAAAATAAAAATAAGAA
1 TAAAAT-AAAATAAAAATAAAAA
*
692296 TAAAATAAAATAAGAATAAAAA
1 TAAAATAAAATAAAAATAAAAA
692318 TGAAAATAAA
1 T-AAAATAAA
692328 TATACTAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 15 0.52
23 14 0.48
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.18
Consensus pattern (22 bp):
TAAAATAAAATAAAAATAAAAA
Found at i:692352 original size:10 final size:10
Alignment explanation
Indices: 692337--692381 Score: 65
Period size: 10 Copynumber: 4.6 Consensus size: 10
692327 ATATACTAAT
692337 TTTTTTTGAA
1 TTTTTTTGAA
692347 -TTTTTTGAA
1 TTTTTTTGAA
*
692356 TTTTTTTGAT
1 TTTTTTTGAA
*
692366 TTTTTTTCAA
1 TTTTTTTGAA
692376 TTTTTT
1 TTTTTT
692382 AAAAAATTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
9 9 0.29
10 22 0.71
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.76
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:692359 original size:8 final size:9
Alignment explanation
Indices: 692338--692381 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
692328 TATACTAATT
692338 TTTTTTGAA
1 TTTTTTGAA
692347 TTTTTTGAA
1 TTTTTTGAA
*
692356 TTTTTTTGATT
1 -TTTTTTGA-A
*
692367 TTTTTTCAA
1 TTTTTTGAA
692376 TTTTTT
1 TTTTTT
692382 AAAAAATTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 15 0.50
10 15 0.50
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.75
Consensus pattern (9 bp):
TTTTTTGAA
Found at i:696320 original size:25 final size:23
Alignment explanation
Indices: 696292--696337 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
696282 GTTGAATCCA
696292 AATTAAATTCTAAAAAAATAATTTG
1 AATTAAA-TCT-AAAAAATAATTTG
*
696317 AATTAAATCTAAATAATAATT
1 AATTAAATCTAAAAAATAATT
696338 CCCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 3 0.15
25 7 0.35
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTTG
Found at i:698295 original size:11 final size:12
Alignment explanation
Indices: 698281--698328 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
698271 AAAAATACAT
698281 AATTAAAAT-AA
1 AATTAAAATGAA
698292 AATTAAAA--ATA
1 AATTAAAATGA-A
698303 AA-TAAAATGAA
1 AATTAAAATGAA
*
698314 AATGAAAATGAA
1 AATTAAAATGAA
698326 AAT
1 AAT
698329 AAATATACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
10 6 0.19
11 14 0.44
12 12 0.38
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (12 bp):
AATTAAAATGAA
Found at i:698308 original size:21 final size:22
Alignment explanation
Indices: 698279--698321 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
698269 TAAAAAATAC
* *
698279 ATAATTAAAAT-AAAATTAAAA
1 ATAAATAAAATGAAAATGAAAA
698300 ATAAATAAAATGAAAATGAAAA
1 ATAAATAAAATGAAAATGAAAA
698322 TGAAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (22 bp):
ATAAATAAAATGAAAATGAAAA
Found at i:698321 original size:12 final size:11
Alignment explanation
Indices: 698302--698331 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
698292 AATTAAAAAT
698302 AAATAAAATGA
1 AAATAAAATGA
698313 AAATGAAAATGA
1 AAAT-AAAATGA
698325 AAATAAA
1 AAATAAA
698332 TATACTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (11 bp):
AAATAAAATGA
Found at i:703890 original size:30 final size:30
Alignment explanation
Indices: 703856--704015 Score: 157
Period size: 30 Copynumber: 5.4 Consensus size: 30
703846 AAAATGGTGA
* * *
703856 TTTTGGAACTGTCGGGGTAAAAAATGGAAT
1 TTTTGGAAGTTTCGGGGTCAAAAATGGAAT
* *
703886 TTTTGGAA-TTTTGAGGGT-AAAAATGTAAT
1 TTTTGGAAGTTTCG-GGGTCAAAAATGGAAT
* * * *
703915 TTTGGGAAGTTTTGTGGTCAAAAATGAAAT
1 TTTTGGAAGTTTCGGGGTCAAAAATGGAAT
*
703945 TTTTGGAAGTTTCGAGGTCAAAAATGGAAT
1 TTTTGGAAGTTTCGGGGTCAAAAATGGAAT
* *
703975 TTTTGGAAGTTT-GAGGT-AAAAATGTAAT
1 TTTTGGAAGTTTCGGGGTCAAAAATGGAAT
*
704003 TTTTAGATAGTTT
1 TTTTGGA-AGTTT
704016 AAGGACCTTT
Statistics
Matches: 114, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
28 16 0.14
29 33 0.29
30 65 0.57
ACGTcount: A:0.33, C:0.03, G:0.26, T:0.38
Consensus pattern (30 bp):
TTTTGGAAGTTTCGGGGTCAAAAATGGAAT
Found at i:703947 original size:59 final size:58
Alignment explanation
Indices: 703875--704015 Score: 169
Period size: 59 Copynumber: 2.4 Consensus size: 58
703865 TGTCGGGGTA
* * * *
703875 AAAAATGGAATTTTTGGAA-TTTTGAGGGT-AAAAATGTAATTTTGGGAAGTTTTGTGGT
1 AAAAATGAAATTTTTGGAAGTTTCGA-GGTCAAAAATGGAATTTTGGGAAG-TTTGAGGT
*
703933 CAAAAATGAAATTTTTGGAAGTTTCGAGGTCAAAAATGGAATTTTTGGAAGTTTGAGGT
1 -AAAAATGAAATTTTTGGAAGTTTCGAGGTCAAAAATGGAATTTTGGGAAGTTTGAGGT
* *
703992 AAAAATGTAATTTTTAGATAGTTT
1 AAAAATGAAATTTTTGGA-AGTTT
704016 AAGGACCTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
58 16 0.22
59 33 0.46
60 23 0.32
ACGTcount: A:0.35, C:0.02, G:0.24, T:0.38
Consensus pattern (58 bp):
AAAAATGAAATTTTTGGAAGTTTCGAGGTCAAAAATGGAATTTTGGGAAGTTTGAGGT
Found at i:703990 original size:29 final size:28
Alignment explanation
Indices: 703875--704015 Score: 165
Period size: 30 Copynumber: 4.8 Consensus size: 28
703865 TGTCGGGGTA
*
703875 AAAAATGGAATTTTTGGAATTTTGAGGGT
1 AAAAATGGAATTTTTGGAAGTTTGA-GGT
* * *
703904 AAAAATGTAATTTTGGGAAGTTTTGTGGT
1 AAAAATGGAATTTTTGGAAG-TTTGAGGT
*
703933 CAAAAATGAAATTTTTGGAAGTTTCGAGGT
1 -AAAAATGGAATTTTTGGAAGTTT-GAGGT
703963 CAAAAATGGAATTTTTGGAAGTTTGAGGT
1 -AAAAATGGAATTTTTGGAAGTTTGAGGT
* *
703992 AAAAATGTAATTTTTAGATAGTTT
1 AAAAATGGAATTTTTGGA-AGTTT
704016 AAGGACCTTT
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
28 16 0.16
29 33 0.34
30 49 0.50
ACGTcount: A:0.35, C:0.02, G:0.24, T:0.38
Consensus pattern (28 bp):
AAAAATGGAATTTTTGGAAGTTTGAGGT
Found at i:704359 original size:20 final size:20
Alignment explanation
Indices: 704334--704371 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
704324 TCATGTAGTG
704334 TCAAAGAATAAATTTCCCCA
1 TCAAAGAATAAATTTCCCCA
704354 TCAAAGAATAAATTTCCC
1 TCAAAGAATAAATTTCCC
704372 AAAACGACGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (20 bp):
TCAAAGAATAAATTTCCCCA
Found at i:704445 original size:37 final size:37
Alignment explanation
Indices: 704395--704469 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
704385 TTTGGGTGCA
704395 CACCCAAAACTACGTCGTTTTGGGAGGTTATAAATAT
1 CACCCAAAACTACGTCGTTTTGGGAGGTTATAAATAT
704432 CACCCAAAACTACGTCGTTTTGGGAGGTTATAAATAT
1 CACCCAAAACTACGTCGTTTTGGGAGGTTATAAATAT
704469 C
1 C
704470 CCTTTAAACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (37 bp):
CACCCAAAACTACGTCGTTTTGGGAGGTTATAAATAT
Found at i:705832 original size:6 final size:6
Alignment explanation
Indices: 705821--705892 Score: 53
Period size: 6 Copynumber: 12.2 Consensus size: 6
705811 CAAATTTACC
* * *
705821 AAATTT AAATTT AACA--C AAACTT AAATTTT AAAATT -AATTT AAATTT
1 AAATTT AAATTT AA-ATTT AAATTT AAA-TTT AAATTT AAATTT AAATTT
*
705868 AAATTTT AAA-AT AAATTT AAATTT A
1 AAA-TTT AAATTT AAATTT AAATTT A
705893 TAAATAAATT
Statistics
Matches: 52, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
4 1 0.02
5 10 0.19
6 29 0.56
7 12 0.23
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (6 bp):
AAATTT
Found at i:705853 original size:24 final size:24
Alignment explanation
Indices: 705824--705879 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
705814 ATTTACCAAA
*
705824 TTTAAATTTAACACAAACTTAAAT
1 TTTAAAATTAACACAAACTTAAAT
*** *
705848 TTTAAAATTAATTTAAATTTAAAT
1 TTTAAAATTAACACAAACTTAAAT
705872 TTTAAAAT
1 TTTAAAAT
705880 AAATTTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTAAAATTAACACAAACTTAAAT
Found at i:705876 original size:18 final size:17
Alignment explanation
Indices: 705861--705909 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 17
705851 AAAATTAATT
705861 TAAATTTAAATTTTAAAA
1 TAAATTTAAATTTT-AAA
705879 TAAATTTAAATTTATAAA
1 TAAATTTAAATTT-TAAA
705897 TAAATTTAGAATT
1 TAAATTTA-AATT
705910 AACTTAAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
TAAATTTAAATTTTAAA
Found at i:705884 original size:24 final size:24
Alignment explanation
Indices: 705842--705892 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
705832 TAACACAAAC
*
705842 TTAAATTTTAAAATTAATTTAAAT
1 TTAAATTTTAAAATAAATTTAAAT
705866 TTAAATTTTAAAATAAATTTAAAT
1 TTAAATTTTAAAATAAATTTAAAT
705890 TTA
1 TTA
705893 TAAATAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
TTAAATTTTAAAATAAATTTAAAT
Found at i:721491 original size:2 final size:2
Alignment explanation
Indices: 721484--721513 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
721474 ATTGAAAATA
721484 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
721514 TTGGATAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:726831 original size:883 final size:882
Alignment explanation
Indices: 724856--727060 Score: 3513
Period size: 883 Copynumber: 2.5 Consensus size: 882
724846 AAGAGTCTCC
* * * *
724856 TTTAAAGCAATTTGATTATAACTCATACTTCTATACAAGAATTA-TAGAATTTGCTCAGAGAATT
1 TTTAAAGCAATTTGATTATAACCCATACTTCTATGCAACAATAAGT-GAATTTGCTCAGAGAATT
* ** * * * * * *
724920 TGACTCAAGGGATTCAATCAACGGCCTCAGTCAAAACATCACCCTTTAAGAGTTTGATATCTTCC
65 TGACTCGAGGGATTCGGTCAATGGCTTCAGTCAAAACATCACCCTCTAAGAATCTGATATCTTAC
* * * *
724985 TTATTAGTATTAATTTTCGCATCTACCACATTCCCCAATGCATTCAAGAGAGTCTCTTTAAAAGA
130 TCATTA-TATTATTTTTCGCATCTACCACATTCCCCATTGCATTCAAGAGAGTCTCTTTAAAACA
* *
725050 TCATTTTTCGGTTCATCCTCTCTTAGTCGAACCTTTTCGGTACCTTTCCTTACGCCGAATAAATG
194 TCATTTTTCGGTTCATCCTCTCTTAGTCGAACCTTTTCGGTACCCTACCTTACGCCGAATAAATG
* * *
725115 AAGCGATAAGGATAATCCATTTCAGTAATAAAGCTCGAATCCACGTCCTCCTGCATTGAGAACGA
259 AAGCGATAAGGATAATCCATTTCAGCAATATAGCTCGAATCCACGTCCTCCTGCATTGGGAACGA
*
725180 TGCTCATGCCAATCGAGCTAAAACTCAATCAACTTGGTATAGTATTTTTAACATGGCATAAATTG
324 TGCCCATGCCAATCGAGCTAAAACTCAATCAACTTGGTATAGTATTTTTAACATGGCATAAATTG
*
725245 TCAAATAGTGTAAGAATAAAATTTGTTTATATAAATCTCATTATTTCAAATCAATTGATGTTGGA
389 ACAAATAGTGTAAGAATAAAATTTGTTTATATAAATCTCATTATTTCAAATCAATTGATGTTGGA
*
725310 CAAAACACGTTAGCGAACACATATTGTATTATTTAATTAACTGTTGACAAATTTCTTTAACTAAC
454 CAAAACACGTTAGCGAACACATATTGTATTATTTAATTAACCGTTGACAAATTTCTTTAACTAAC
* * *
725375 CGTTGAAATACTAGGTCCTTCAAAGAACCAATCCTAGGCATGCACTTCATATTGTTTTCTTTTAT
519 CGTTGAAATACCAAGTCCTTCAAAGAACCAATCCTAGACATGCACTTCATATTGTTTTCTTTTAT
* *
725440 TAACCGATGATAAATTTATTTTACTTTGATTTCAAAATTTGAAGCTACAATTTAAAGCTACAACG
584 TAACCGATCATAAATTTATTTTACTTTGATTTCAAAATTTGAAGCTACAATTTAAAGCCACAACG
*
725505 AAGGCCATAATTAACAGAAAATTTCAATATCCAGTTGATAAAATCTTTTAATTTTGTTAAACGGC
649 AAGGCCACAATTAACAGAAAATTTCAATATCCAGTTGATAAAATCTTTTAATTTTGTTAAACGGC
* *
725570 AGAATTATAATTCTGAAACAAAATCAAAATTAATTCTATTGAACTGTAGGATTAAGCCCAGAAGT
714 AGAATTAAAATTCTGAAACAAAATCAAAATTAATTCTATTGAACTGTAGGATTAAGCCCAGAAGC
*
725635 AGATTTTAATTAATTTTTTATTTGTAAACTAAATCAAAATGATATCAAATCTGTTGAACGGTGGT
779 AGATTTTAATTAATTTTTTATTTGTAAACTAAATCAAAATGATATCAAATCTGTTGAACGGCGGT
725700 AATAAATCCCGAAACAAAATTATTTAATTTTAATTTTTA
844 AATAAATCCCGAAACAAAATTATTTAATTTTAATTTTTA
* *
725739 TTTAAAGTAAATTGATTATAACCCATACTTCTATGCAACAATAAGTGAATTTGCTCAGAGAATTT
1 TTTAAAGCAATTTGATTATAACCCATACTTCTATGCAACAATAAGTGAATTTGCTCAGAGAATTT
* * * * *
725804 GACTCGAGGGATTTGGTCAGTGGCTTCAGTCAAGACATCACCCGCTAAGCATCTGATATCTTACT
66 GACTCGAGGGATTCGGTCAATGGCTTCAGTCAAAACATCACCCTCTAAGAATCTGATATCTTACT
* *
725869 CATTTGTATTATTTTTCGCATCTACCACATTCCCCATTGCATTCAAGAGTGTCTCTTTAAAACAT
131 CA-TTATATTATTTTTCGCATCTACCACATTCCCCATTGCATTCAAGAGAGTCTCTTTAAAACAT
* * * *
725934 CATTTTTCGGTTCATCCTCTCTTAGACGAACCTTTTTGGTACCCTGCCTCACGCCGAATAAATGA
195 CATTTTTCGGTTCATCCTCTCTTAGTCGAACCTTTTCGGTACCCTACCTTACGCCGAATAAATGA
*
725999 AGCGATAAGGATAATCCATTTCAGCAATATAGCTCAAATCCACGTCCTCCTGCATTGGGAACGAT
260 AGCGATAAGGATAATCCATTTCAGCAATATAGCTCGAATCCACGTCCTCCTGCATTGGGAACGAT
* *
726064 GCCCATGCCAATCAAGCTAAAACTCAATCAACTTGTTATAGTATTTTTAACATGGCATAAATTGA
325 GCCCATGCCAATCGAGCTAAAACTCAATCAACTTGGTATAGTATTTTTAACATGGCATAAATTGA
726129 CAAATAGTGTAAGAATAAAATTTGTTTATATAAATCTCATTATTTCAAATCAATTGATGTTGGAC
390 CAAATAGTGTAAGAATAAAATTTGTTTATATAAATCTCATTATTTCAAATCAATTGATGTTGGAC
726194 AAAACACGTTAGCGAACACATATTGTATTATTTAATTAACCGTTGACAAATTTCTTTAACTAACC
455 AAAACACGTTAGCGAACACATATTGTATTATTTAATTAACCGTTGACAAATTTCTTTAACTAACC
726259 GTTGAAATACCAAGTCCTTCAAAGAACCAATCCTAGACATGCACTTCATATTGTTTTCTTTTATT
520 GTTGAAATACCAAGTCCTTCAAAGAACCAATCCTAGACATGCACTTCATATTGTTTTCTTTTATT
* *
726324 AACCGCTCATAAATTTGTTTTACTTTGATTTCAAAATTTGAAGCTACAATTTAAAGCCACAACGA
585 AACCGATCATAAATTTATTTTACTTTGATTTCAAAATTTGAAGCTACAATTTAAAGCCACAACGA
* * * *
726389 AGGCCACAATTAACAGAAAATTTTAATTTCCAGTTTATAAAATCTTTTAATTTTGTTATACGGCA
650 AGGCCACAATTAACAGAAAATTTCAATATCCAGTTGATAAAATCTTTTAATTTTGTTAAACGGCA
*
726454 GAATTAAAATTCTGAAACAAAATCAAAATTAATTCTATTGAACTGTAGGATTAAGCCTAGAAGCA
715 GAATTAAAATTCTGAAACAAAATCAAAATTAATTCTATTGAACTGTAGGATTAAGCCCAGAAGCA
*
726519 GATTTTAATTAATTTTTTTATTTGTAAACTAAATCAAAATGA-AGTCAAATCTGTTGAATGGCGG
780 GATTTTAATTAA-TTTTTTATTTGTAAACTAAATCAAAATGATA-TCAAATCTGTTGAACGGCGG
* * *
726583 TAATAAATCCCGAAATAGAATTATTTAATTTTTATTTTTA
843 TAATAAATCCCGAAACAAAATTATTTAATTTTAATTTTTA
*
726623 TTTAAAGCAATTTGATTATAACCCATACTTCTATGCAACAATGAGTGAATTTGCTCAGAGAATTT
1 TTTAAAGCAATTTGATTATAACCCATACTTCTATGCAACAATAAGTGAATTTGCTCAGAGAATTT
* *
726688 GACTCGAGGGATCCGGTCAATGGCTTCAATCAAAACATCACCCTCTAAGAATCTGATATCTTACT
66 GACTCGAGGGATTCGGTCAATGGCTTCAGTCAAAACATCACCCTCTAAGAATCTGATATCTTACT
726753 CATCTATATTATTTTTCGCATCTACCACATTCCCCATTGCATTCAAGAGAGTCTCTTTAAAACAT
131 CAT-TATATTATTTTTCGCATCTACCACATTCCCCATTGCATTCAAGAGAGTCTCTTTAAAACAT
* * * *
726818 CAATTTT-GGTTCATCCTCTCTTAGTCGAACCTTTTCGGTACCCCCACCTTACGCCGCA-AAAGG
195 CATTTTTCGGTTCATCCTCTCTTAGTCGAACCTTTTCGGTA-CCCTACCTTACGCCGAATAAATG
** * * * * * * *
726881 AATTGACT-AGGACAATCCACTTCAGCAATATTGCTCGAATCGACATCCTCCTGCATTGGAAACA
259 AAGCGA-TAAGGATAATCCATTTCAGCAATATAGCTCGAATCCACGTCCTCCTGCATTGGGAACG
* * * * * *
726945 ATGTCCATGCCGATCGAGCTAAGACTCAATCAGCTTGGTATCGTATATTTAACATGGCATAAATT
323 ATGCCCATGCCAATCGAGCTAAAACTCAATCAACTTGGTATAGTATTTTTAACATGGCATAAATT
* * *
727010 GA-AAACTAGTGTTAGAATAAGATTTGTTTATATAAATCTCCTTATTTCAAA
388 GACAAA-TAGTGTAAGAATAAAATTTGTTTATATAAATCTCATTATTTCAAA
727061 ACAACTGACA
Statistics
Matches: 1213, Mismatches: 101, Indels: 16
0.91 0.08 0.01
Matches are distributed among these distances:
882 3 0.00
883 922 0.76
884 288 0.24
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (882 bp):
TTTAAAGCAATTTGATTATAACCCATACTTCTATGCAACAATAAGTGAATTTGCTCAGAGAATTT
GACTCGAGGGATTCGGTCAATGGCTTCAGTCAAAACATCACCCTCTAAGAATCTGATATCTTACT
CATTATATTATTTTTCGCATCTACCACATTCCCCATTGCATTCAAGAGAGTCTCTTTAAAACATC
ATTTTTCGGTTCATCCTCTCTTAGTCGAACCTTTTCGGTACCCTACCTTACGCCGAATAAATGAA
GCGATAAGGATAATCCATTTCAGCAATATAGCTCGAATCCACGTCCTCCTGCATTGGGAACGATG
CCCATGCCAATCGAGCTAAAACTCAATCAACTTGGTATAGTATTTTTAACATGGCATAAATTGAC
AAATAGTGTAAGAATAAAATTTGTTTATATAAATCTCATTATTTCAAATCAATTGATGTTGGACA
AAACACGTTAGCGAACACATATTGTATTATTTAATTAACCGTTGACAAATTTCTTTAACTAACCG
TTGAAATACCAAGTCCTTCAAAGAACCAATCCTAGACATGCACTTCATATTGTTTTCTTTTATTA
ACCGATCATAAATTTATTTTACTTTGATTTCAAAATTTGAAGCTACAATTTAAAGCCACAACGAA
GGCCACAATTAACAGAAAATTTCAATATCCAGTTGATAAAATCTTTTAATTTTGTTAAACGGCAG
AATTAAAATTCTGAAACAAAATCAAAATTAATTCTATTGAACTGTAGGATTAAGCCCAGAAGCAG
ATTTTAATTAATTTTTTATTTGTAAACTAAATCAAAATGATATCAAATCTGTTGAACGGCGGTAA
TAAATCCCGAAACAAAATTATTTAATTTTAATTTTTA
Found at i:728149 original size:213 final size:213
Alignment explanation
Indices: 727782--728219 Score: 644
Period size: 213 Copynumber: 2.1 Consensus size: 213
727772 GTCTTTCTTG
* * * * *
727782 TAAACTTTTCAACCATTTTATTCACCCCCGATATAAAGTGAGGGTTTGTTATTATTTTGTTCAAA
1 TAAACTTTTCAACCAATATATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGTTCAAA
* * *
727847 CGCTCCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCCGAAAA
66 CGCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCAGACATAACTGAAGCCGAAAA
*
727912 TAACCTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACAGTAGAAGTTGTCCCATCCAAAC
131 TAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACAGTAGAAGTTGTCCCATCCAAAC
* *
727977 TCTCTCCAACAGAGCTTT
196 TCTCTCCAACAAAGCCTT
* * *
727995 TAAACTTTT-AATCCAATATATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGTTCAA
1 TAAACTTTTCAA-CCAATATATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGTTCAA
* ** *
728059 ACGCTCCCCTTTTATTCTGCCATCTTGCAATCCAAGGATAATGGCAGACATAACTGAAGCCGAAA
65 ACGCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCAGACATAACTGAAGCCGAAA
* * * *
728124 ATACCCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGTAGGAGTTGTCCCATCCACA
130 ATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACAGTAGAAGTTGTCCCATCCAAA
*
728189 CTCTCTCCATCAAAGCCTT
195 CTCTCTCCAACAAAGCCTT
*
728208 TAAACATTTCAA
1 TAAACTTTTCAA
728220 TGAGTTTAGC
Statistics
Matches: 199, Mismatches: 24, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
212 2 0.01
213 195 0.98
214 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (213 bp):
TAAACTTTTCAACCAATATATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGTTCAAA
CGCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCAGACATAACTGAAGCCGAAAA
TAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACAGTAGAAGTTGTCCCATCCAAAC
TCTCTCCAACAAAGCCTT
Found at i:733054 original size:25 final size:23
Alignment explanation
Indices: 733026--733071 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
733016 GTTGAATCCA
733026 AATTAAATTCTAAAAAAATAATTTG
1 AATTAAA-TCT-AAAAAATAATTTG
*
733051 AATTAAATCTAAATAATAATT
1 AATTAAATCTAAAAAATAATT
733072 CCCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 3 0.15
25 7 0.35
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTTG
Found at i:735038 original size:21 final size:21
Alignment explanation
Indices: 735014--735062 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
735004 AAAAAAATGC
* *
735014 ATAATTAAAATAAAATTAAAA
1 ATAAATAAAATAAAAATAAAA
*
735035 ATAAATAAAATAAAAATGAAA
1 ATAAATAAAATAAAAATAAAA
735056 ATAAATA
1 ATAAATA
735063 TACTAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (21 bp):
ATAAATAAAATAAAAATAAAA
Found at i:735062 original size:16 final size:16
Alignment explanation
Indices: 735019--735060 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
735009 AATGCATAAT
735019 TAAAATAAAATTAAAAA
1 TAAAATAAAA-TAAAAA
735036 T-AAATAAAATAAAAA
1 TAAAATAAAATAAAAA
735051 TGAAAATAAA
1 T-AAAATAAA
735061 TATACTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 7 0.30
16 8 0.35
17 8 0.35
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (16 bp):
TAAAATAAAATAAAAA
Found at i:735830 original size:3 final size:3
Alignment explanation
Indices: 735824--735865 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
735814 AAGGGTCCAA
*
735824 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
735866 TGAACTAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:740564 original size:61 final size:58
Alignment explanation
Indices: 740437--740574 Score: 150
Period size: 61 Copynumber: 2.3 Consensus size: 58
740427 GGATGCCCGG
** * * * **
740437 GGGTAAAATGGTAATTTTGGGAAAATTTAGGGTTAAAAATGACATTTTAGACATTTAA
1 GGGTAAAATGGTAATTTTGAAAAAAATCAGGATTAAAAATGACATTTTAGACATCCAA
* * *
740495 GGGTAAAATGGTAATTTTAAGAAAAAAATCAGGATTAAAAATGAGATTTTTGGACATCCGA
1 GGGTAAAATGGTAATTTT--GAAAAAAATCAGGATTAAAAATGACA-TTTTAGACATCCAA
*
740556 GGGTAAAATGGTGATTTTG
1 GGGTAAAATGGTAATTTTG
740575 GAAGTGTCGG
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
58 18 0.27
59 1 0.02
60 20 0.30
61 27 0.41
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (58 bp):
GGGTAAAATGGTAATTTTGAAAAAAATCAGGATTAAAAATGACATTTTAGACATCCAA
Found at i:740637 original size:29 final size:29
Alignment explanation
Indices: 740530--740748 Score: 120
Period size: 30 Copynumber: 7.6 Consensus size: 29
740520 AAATCAGGAT
*
740530 TAAAAATG-AGATTTTTGGACA-TCCGAGGG
1 TAAAAATGTA-ATTTTTGGA-ATTTCGAGGG
* * *
740559 T-AAAATGGTGA-TTTTGGAAGTGTCG-GGA
1 TAAAAAT-GTAATTTTTGGAA-TTTCGAGGG
* *
740587 TAAAAAATGGAATTTTTTGGAATTTTGAGGG
1 T-AAAAATGTAA-TTTTTGGAATTTCGAGGG
* * *
740618 TAAAAATGTAATTTTGGGAAGTTTCGTGGT
1 TAAAAATGTAATTTTTGGAA-TTTCGAGGG
* * *
740648 TAAAAATGAAAATTTTAGAAGTTT-G-GGG
1 TAAAAATGTAATTTTTGGAA-TTTCGAGGG
*
740676 CT--AAATGTAATTTTTGTAAGTTTCGA-GG
1 -TAAAAATGTAATTTTTGGAA-TTTCGAGGG
*
740704 TAAAAAATAG-AATTTTTGGAAGTTCGA-GG
1 T-AAAAAT-GTAATTTTTGGAATTTCGAGGG
740733 TAAAAATGTAATTTTT
1 TAAAAATGTAATTTTT
740749 AGATAGTTTA
Statistics
Matches: 147, Mismatches: 25, Indels: 37
0.70 0.12 0.18
Matches are distributed among these distances:
27 20 0.14
28 33 0.22
29 25 0.17
30 57 0.39
31 12 0.08
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (29 bp):
TAAAAATGTAATTTTTGGAATTTCGAGGG
Found at i:740652 original size:30 final size:30
Alignment explanation
Indices: 740570--740757 Score: 149
Period size: 30 Copynumber: 6.4 Consensus size: 30
740560 AAAATGGTGA
* * *
740570 TTTTGGAAGTGTCG-GGATAAAAAATGGAATT
1 TTTTGGAAGTTTCGAGG-TTAAAAATGTAA-T
* *
740601 TTTTGGAA-TTTTGAGGGTAAAAATGTAAT
1 TTTTGGAAGTTTCGAGGTTAAAAATGTAAT
* * * *
740630 TTTGGGAAGTTTCGTGGTTAAAAATGAAAA
1 TTTTGGAAGTTTCGAGGTTAAAAATGTAAT
* * *
740660 TTTTAGAAGTTT-GGGGCT--AAATGTAAT
1 TTTTGGAAGTTTCGAGGTTAAAAATGTAAT
* *
740687 TTTTGTAAGTTTCGAGGTAAAAAATAG-AAT
1 TTTTGGAAGTTTCGAGGTTAAAAAT-GTAAT
740717 TTTTGGAAG-TTCGAGG-TAAAAATGTAAT
1 TTTTGGAAGTTTCGAGGTTAAAAATGTAAT
*
740745 TTTTAGATAGTTT
1 TTTTGGA-AGTTT
740758 AGGGACCTTT
Statistics
Matches: 123, Mismatches: 25, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
27 18 0.15
28 18 0.15
29 21 0.17
30 55 0.45
31 11 0.09
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (30 bp):
TTTTGGAAGTTTCGAGGTTAAAAATGTAAT
Found at i:740726 original size:57 final size:56
Alignment explanation
Indices: 740531--740757 Score: 185
Period size: 57 Copynumber: 3.9 Consensus size: 56
740521 AATCAGGATT
** * *
740531 AAAAATGAGATTTTTGGACA-TCCGAGGGTAAAATGGTGA-TTTTGGAAGTGTCGGGATA
1 AAAAATGA-ATTTTTGGA-AGTTTGAGGGTAAAAT-GTAATTTTTGGAAGTTTCGGG-TA
* * *
740589 AAAAATGGAATTTTTTGGAATTTTGAGGGTAAAAATGTAATTTTGGGAAGTTTCGTGGTT
1 AAAAAT-GAA-TTTTTGGAAGTTTGAGGGT-AAAATGTAATTTTTGGAAGTTTCG-GGTA
* * *
740649 AAAAATGAAAATTTTAGAAGTTTG-GGGCT-AAATGTAATTTTTGTAAGTTTCGAGGTA
1 AAAAATG-AATTTTTGGAAGTTTGAGGG-TAAAATGTAATTTTTGGAAGTTTCG-GGTA
* *
740706 AAAAATAGAATTTTTGGAAGTTCGA-GGTAAAAATGTAATTTTTAGATAGTTT
1 AAAAAT-GAATTTTTGGAAGTTTGAGGGT-AAAATGTAATTTTTGGA-AGTTT
740758 AGGGACCTTT
Statistics
Matches: 138, Mismatches: 18, Indels: 25
0.76 0.10 0.14
Matches are distributed among these distances:
56 1 0.01
57 45 0.33
58 26 0.19
59 38 0.28
60 26 0.19
61 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (56 bp):
AAAAATGAATTTTTGGAAGTTTGAGGGTAAAATGTAATTTTTGGAAGTTTCGGGTA
Found at i:746397 original size:213 final size:213
Alignment explanation
Indices: 745979--746421 Score: 665
Period size: 213 Copynumber: 2.1 Consensus size: 213
745969 CTTCGGTCTT
* * * * * * *
745979 GCTTGTAAAATTTTCAACCATTTTATTCACCCCCGATATAAAGTGAGGGTTTGTTATTATTTTTT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
746044 TCAAATCCTCCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCC
66 TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
*
746109 GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATC
131 GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATC
746174 CACACTCTCTCCGA-CAGA
196 CACACTCTCTCC-ATCAGA
* * * *
746192 GCTTTTAAACTTTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
746257 TCAAA-CGCTCCCCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGC
66 TCAAATC-CTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGC
* *
746321 CGAAAATACCCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGGAGTTGTCCCAT
130 CGAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCAT
746386 CCACACTCTCTCCATCAGA
195 CCACACTCTCTCCATCAGA
*
746405 GCTTTTAAACGTTTCAA
1 GCTTTTAAACTTTTCAA
746422 TGAGTTTAGC
Statistics
Matches: 206, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
212 2 0.01
213 204 0.99
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (213 bp):
GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATC
CACACTCTCTCCATCAGA
Found at i:746459 original size:213 final size:213
Alignment explanation
Indices: 745990--746482 Score: 629
Period size: 213 Copynumber: 2.3 Consensus size: 213
745980 CTTGTAAAAT
* * * * * * * *
745990 TTTCAACCATTTTATTCACCCCCGATATAAA-GTGAGGGTTTGTTATTATTTTTTTCAAATC-CT
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGT-AGCGTCTGTTATTATTTTGTTCAAA-CGCT
* * *
746053 CCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCCGAAAATAAC
64 CCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAAC
*
746118 CTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
129 CTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
*
746183 TCCGACAGAGCTTTTAAACT
194 TCCGACAGAGCTTTTAAACG
* * ** *
746203 TTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGTTCAAACGCTCC
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
* * * *
746268 CCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGCCGAAAATACCCT
66 CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
*
746333 CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGGAGTTGTCCCATCCACACTCTCTC
131 CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
746398 C-ATCAGAGCTTTTAAACG
196 CGA-CAGAGCTTTTAAACG
* * * ** *
746416 TTTCAAT-GAGTTTA-GCAGCCCCCGACATTAAGGTAGCGTCTGTTATTATTTTG-TCGAAATGC
1 TTTC-ATCCAATTTATCCA-CCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTC-AAACGC
746478 TCCCC
63 TCCCC
746483 AAAGTCCGTC
Statistics
Matches: 245, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
212 6 0.02
213 236 0.96
214 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (213 bp):
TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
CGACAGAGCTTTTAAACG
Found at i:751100 original size:213 final size:213
Alignment explanation
Indices: 750687--751124 Score: 664
Period size: 213 Copynumber: 2.1 Consensus size: 213
750677 GTCTTTCTTG
* * * * * *
750687 TAAAATTTTCAACCATTTTATTCACCCCCGATATAAAGTGAGGGTTTGTTATTATTTTTTTCAAA
1 TAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGTTCAAA
* * *
750752 TCCTCCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCCGAAAA
66 TCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAA
*
750817 TAACCTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATCCACAC
131 TAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACAC
750882 TCTCTCCGA-CAGAGCTTT
196 TCTCTCC-ATCAGAGCTTT
* * * *
750900 TAAACTTTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGTTCAAA
1 TAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGTTCAAA
* * *
750965 -CGCTCCCCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGCCGAAA
66 TC-CTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAA
* *
751029 ATACCCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGGAGTTGTCCCATCCACA
130 ATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACA
751094 CTCTCTCCATCAGAGCTTT
195 CTCTCTCCATCAGAGCTTT
*
751113 TAAACGTTTCAA
1 TAAACTTTTCAA
751125 TGAGTTTAGC
Statistics
Matches: 202, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
212 2 0.01
213 200 0.99
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (213 bp):
TAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGTTCAAA
TCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAA
TAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACAC
TCTCTCCATCAGAGCTTT
Found at i:751162 original size:213 final size:213
Alignment explanation
Indices: 750693--751185 Score: 629
Period size: 213 Copynumber: 2.3 Consensus size: 213
750683 CTTGTAAAAT
* * * * * * * *
750693 TTTCAACCATTTTATTCACCCCCGATATAAA-GTGAGGGTTTGTTATTATTTTTTTCAAATC-CT
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGT-AGCGTCTGTTATTATTTTGTTCAAA-CGCT
* * *
750756 CCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCCGAAAATAAC
64 CCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAAC
*
750821 CTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
129 CTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
*
750886 TCCGACAGAGCTTTTAAACT
194 TCCGACAGAGCTTTTAAACG
* * ** *
750906 TTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGTTCAAACGCTCC
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
* * * *
750971 CCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGCCGAAAATACCCT
66 CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
*
751036 CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGGAGTTGTCCCATCCACACTCTCTC
131 CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
751101 C-ATCAGAGCTTTTAAACG
196 CGA-CAGAGCTTTTAAACG
* * * ** *
751119 TTTCAAT-GAGTTTA-GCAGCCCCCGACATTAAGGTAGCGTCTGTTATTATTTTG-TCGAAATGC
1 TTTC-ATCCAATTTATCCA-CCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTC-AAACGC
751181 TCCCC
63 TCCCC
751186 AAAGTCCGTC
Statistics
Matches: 245, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
212 6 0.02
213 236 0.96
214 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (213 bp):
TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
CGACAGAGCTTTTAAACG
Found at i:755803 original size:213 final size:213
Alignment explanation
Indices: 755385--755827 Score: 665
Period size: 213 Copynumber: 2.1 Consensus size: 213
755375 CTTCGGTCTT
* * * * * * *
755385 GCTTGTAAAATTTTCAACCATTTTATTCACCCCCGATATAAAGTGAGGGTTTGTTATTATTTTTT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
755450 TCAAATCCTCCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCC
66 TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
*
755515 GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATC
131 GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATC
755580 CACACTCTCTCCGA-CAGA
196 CACACTCTCTCC-ATCAGA
* * * *
755598 GCTTTTAAACTTTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
755663 TCAAA-CGCTCCCCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGC
66 TCAAATC-CTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGC
* *
755727 CGAAAATACCCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGGAGTTGTCCCAT
130 CGAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCAT
755792 CCACACTCTCTCCATCAGA
195 CCACACTCTCTCCATCAGA
*
755811 GCTTTTAAACGTTTCAA
1 GCTTTTAAACTTTTCAA
755828 TGAGTTTAGC
Statistics
Matches: 206, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
212 2 0.01
213 204 0.99
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (213 bp):
GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATC
CACACTCTCTCCATCAGA
Found at i:755865 original size:213 final size:213
Alignment explanation
Indices: 755396--755888 Score: 629
Period size: 213 Copynumber: 2.3 Consensus size: 213
755386 CTTGTAAAAT
* * * * * * * *
755396 TTTCAACCATTTTATTCACCCCCGATATAAA-GTGAGGGTTTGTTATTATTTTTTTCAAATC-CT
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGT-AGCGTCTGTTATTATTTTGTTCAAA-CGCT
* * *
755459 CCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCCGAAAATAAC
64 CCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAAC
*
755524 CTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
129 CTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
*
755589 TCCGACAGAGCTTTTAAACT
194 TCCGACAGAGCTTTTAAACG
* * ** *
755609 TTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGTTCAAACGCTCC
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
* * * *
755674 CCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGCCGAAAATACCCT
66 CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
*
755739 CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGGAGTTGTCCCATCCACACTCTCTC
131 CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
755804 C-ATCAGAGCTTTTAAACG
196 CGA-CAGAGCTTTTAAACG
* * * ** *
755822 TTTCAAT-GAGTTTA-GCAGCCCCCGACATTAAGGTAGCGTCTGTTATTATTTTG-TCGAAATGC
1 TTTC-ATCCAATTTATCCA-CCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTC-AAACGC
755884 TCCCC
63 TCCCC
755889 AAAGTCCGTC
Statistics
Matches: 245, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
212 6 0.02
213 236 0.96
214 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (213 bp):
TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
CGACAGAGCTTTTAAACG
Found at i:760506 original size:213 final size:213
Alignment explanation
Indices: 760088--760530 Score: 665
Period size: 213 Copynumber: 2.1 Consensus size: 213
760078 CTTCGGTCTT
* * * * * * *
760088 GCTTGTAAAATTTTCAACCATTTTATTCACCCCCGATATAAAGTGAGGGTTTGTTATTATTTTTT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
760153 TCAAATCCTCCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCC
66 TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
*
760218 GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATC
131 GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATC
760283 CACACTCTCTCCGA-CAGA
196 CACACTCTCTCC-ATCAGA
* * * *
760301 GCTTTTAAACTTTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
760366 TCAAA-CGCTCCCCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGC
66 TCAAATC-CTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGC
* *
760430 CGAAAATACCCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGGAGTTGTCCCAT
130 CGAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCAT
760495 CCACACTCTCTCCATCAGA
195 CCACACTCTCTCCATCAGA
*
760514 GCTTTTAAACGTTTCAA
1 GCTTTTAAACTTTTCAA
760531 TGAGTTTAGC
Statistics
Matches: 206, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
212 2 0.01
213 204 0.99
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (213 bp):
GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATC
CACACTCTCTCCATCAGA
Found at i:760568 original size:213 final size:213
Alignment explanation
Indices: 760099--760591 Score: 629
Period size: 213 Copynumber: 2.3 Consensus size: 213
760089 CTTGTAAAAT
* * * * * * * *
760099 TTTCAACCATTTTATTCACCCCCGATATAAA-GTGAGGGTTTGTTATTATTTTTTTCAAATC-CT
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGT-AGCGTCTGTTATTATTTTGTTCAAA-CGCT
* * *
760162 CCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCCGAAAATAAC
64 CCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAAC
*
760227 CTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
129 CTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
*
760292 TCCGACAGAGCTTTTAAACT
194 TCCGACAGAGCTTTTAAACG
* * ** *
760312 TTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGTTCAAACGCTCC
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
* * * *
760377 CCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGCCGAAAATACCCT
66 CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
*
760442 CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGGAGTTGTCCCATCCACACTCTCTC
131 CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
760507 C-ATCAGAGCTTTTAAACG
196 CGA-CAGAGCTTTTAAACG
* * * ** *
760525 TTTCAAT-GAGTTTA-GCAGCCCCCGACATTAAGGTAGCGTCTGTTATTATTTTG-TCGAAATGC
1 TTTC-ATCCAATTTATCCA-CCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTC-AAACGC
760587 TCCCC
63 TCCCC
760592 AAAGTCCGTC
Statistics
Matches: 245, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
212 6 0.02
213 236 0.96
214 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (213 bp):
TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
CGACAGAGCTTTTAAACG
Found at i:765209 original size:213 final size:213
Alignment explanation
Indices: 764791--765233 Score: 665
Period size: 213 Copynumber: 2.1 Consensus size: 213
764781 CTTCGGTCTT
* * * * * * *
764791 GCTTGTAAAATTTTCAACCATTTTATTCACCCCCGATATAAAGTGAGGGTTTGTTATTATTTTTT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
764856 TCAAATCCTCCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCC
66 TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
*
764921 GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATC
131 GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATC
764986 CACACTCTCTCCGA-CAGA
196 CACACTCTCTCC-ATCAGA
* * * *
765004 GCTTTTAAACTTTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
765069 TCAAA-CGCTCCCCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGC
66 TCAAATC-CTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGC
* *
765133 CGAAAATACCCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGGAGTTGTCCCAT
130 CGAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCAT
765198 CCACACTCTCTCCATCAGA
195 CCACACTCTCTCCATCAGA
*
765217 GCTTTTAAACGTTTCAA
1 GCTTTTAAACTTTTCAA
765234 TGAGTTTAGC
Statistics
Matches: 206, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
212 2 0.01
213 204 0.99
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (213 bp):
GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATC
CACACTCTCTCCATCAGA
Found at i:765271 original size:213 final size:213
Alignment explanation
Indices: 764802--765294 Score: 629
Period size: 213 Copynumber: 2.3 Consensus size: 213
764792 CTTGTAAAAT
* * * * * * * *
764802 TTTCAACCATTTTATTCACCCCCGATATAAA-GTGAGGGTTTGTTATTATTTTTTTCAAATC-CT
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGT-AGCGTCTGTTATTATTTTGTTCAAA-CGCT
* * *
764865 CCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCCGAAAATAAC
64 CCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAAC
*
764930 CTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
129 CTCATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
*
764995 TCCGACAGAGCTTTTAAACT
194 TCCGACAGAGCTTTTAAACG
* * ** *
765015 TTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGTTCAAACGCTCC
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
* * * *
765080 CCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGCCGAAAATACCCT
66 CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
*
765145 CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGGAGTTGTCCCATCCACACTCTCTC
131 CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
765210 C-ATCAGAGCTTTTAAACG
196 CGA-CAGAGCTTTTAAACG
* * * ** *
765228 TTTCAAT-GAGTTTA-GCAGCCCCCGACATTAAGGTAGCGTCTGTTATTATTTTG-TCGAAATGC
1 TTTC-ATCCAATTTATCCA-CCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTC-AAACGC
765290 TCCCC
63 TCCCC
765295 AAAGTCCGTC
Statistics
Matches: 245, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
212 6 0.02
213 236 0.96
214 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (213 bp):
TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
CATCGATTCTGGGGATGCTGCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
CGACAGAGCTTTTAAACG
Found at i:768460 original size:40 final size:38
Alignment explanation
Indices: 768392--768526 Score: 96
Period size: 40 Copynumber: 3.4 Consensus size: 38
768382 ACCAGAATGG
* *
768392 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAAAGTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAG-AATAAAGTGA
* *
768432 CACCCAGTGTCTCATCGGCCTAGCCGAAG--TAAAGTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAATAAAGTGA
* * * * *
768469 TACCCAGTACCTCATCGAATCTATCCGAAGTAA-AATAATGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAG-AATAA-AGTGA
*
768510 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
768527 ACTCGAGGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
37 21 0.28
38 9 0.12
40 24 0.32
41 20 0.27
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAATAAAGTGA
Found at i:768524 original size:41 final size:38
Alignment explanation
Indices: 768424--768527 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 38
768414 TTCGAAGCAA
* *
768424 TAAAGTGACACCCAGTGTCTCATCG-GCCTAGCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
* ** ** * *
768461 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
768499 TAAAATAATGACACCCAGTGTCTCATCGA
1 T--AA-AATGACACCCAGTGTCTCATCGA
768528 CTCGAGGTCG
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
37 21 0.41
38 10 0.20
40 2 0.04
41 18 0.35
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (38 bp):
TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
Found at i:769358 original size:25 final size:24
Alignment explanation
Indices: 769319--769370 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
769309 TAGCTCTCTG
*
769319 TTCTTTCTTCTTTTATTTCTTTTGT
1 TTCTTTCTTCTTTTA-TTCTTTTAT
769344 TTCTTTCTT-TCTTTATTCTTTTAT
1 TTCTTTCTTCT-TTTATTCTTTTAT
769368 TTC
1 TTC
769371 ATATATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.75
Consensus pattern (24 bp):
TTCTTTCTTCTTTTATTCTTTTAT
Found at i:774584 original size:40 final size:38
Alignment explanation
Indices: 774516--774650 Score: 96
Period size: 40 Copynumber: 3.4 Consensus size: 38
774506 ACCAGAATGG
* *
774516 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAAAGTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAG-AATAAAGTGA
* *
774556 CACCCAGTGTCTCATCGGCCTAGCCGAAG--TAAAGTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAATAAAGTGA
* * * * *
774593 TACCCAGTACCTCATCGAATCTATCCGAAGTAA-AATAATGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAG-AATAA-AGTGA
*
774634 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
774651 ACTCAAGGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
37 21 0.28
38 9 0.12
40 24 0.32
41 20 0.27
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAATAAAGTGA
Found at i:774648 original size:41 final size:38
Alignment explanation
Indices: 774548--774651 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 38
774538 TTCGAAGCAA
* *
774548 TAAAGTGACACCCAGTGTCTCATCG-GCCTAGCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
* ** ** * *
774585 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
774623 TAAAATAATGACACCCAGTGTCTCATCGA
1 T--AA-AATGACACCCAGTGTCTCATCGA
774652 CTCAAGGTCG
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
37 21 0.41
38 10 0.20
40 2 0.04
41 18 0.35
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (38 bp):
TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
Found at i:778323 original size:213 final size:213
Alignment explanation
Indices: 777905--778347 Score: 647
Period size: 213 Copynumber: 2.1 Consensus size: 213
777895 CTTCGGTCTT
* * * * * * *
777905 GCTTGTAAAATTTTCAACCATTTTATTCACCCCCGATATAAAGTGAGGGTTTGTTATTATTTTTT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
777970 TCAAATCCTCCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCC
66 TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
* **
778035 GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATC
131 GAAAATAACCTCATCGATTCTGGGGATGCTCCAACCTCACCAGCTACGGCAGAAGTTGTCCCATC
778100 CACACTCTCTCCGA-CAGA
196 CACACTCTCTCC-ATCAGA
* * * *
778118 GCTTTTAAACTTTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
778183 TCAAA-CGCTCCCCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGC
66 TCAAATC-CTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGC
* *
778247 CGAAAATACCCTCATCGATTCTGGGGATGCTCCAACCTCACCAGCTACGGCAGGAGTTGTCCCAT
130 CGAAAATAACCTCATCGATTCTGGGGATGCTCCAACCTCACCAGCTACGGCAGAAGTTGTCCCAT
778312 CCACACTCTCTCCATCAGA
195 CCACACTCTCTCCATCAGA
*
778331 GCTTTTAAACGTTTCAA
1 GCTTTTAAACTTTTCAA
778348 TGAGTTTAGC
Statistics
Matches: 204, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
212 2 0.01
213 202 0.99
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (213 bp):
GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
GAAAATAACCTCATCGATTCTGGGGATGCTCCAACCTCACCAGCTACGGCAGAAGTTGTCCCATC
CACACTCTCTCCATCAGA
Found at i:778385 original size:213 final size:213
Alignment explanation
Indices: 777916--778408 Score: 611
Period size: 213 Copynumber: 2.3 Consensus size: 213
777906 CTTGTAAAAT
* * * * * * * *
777916 TTTCAACCATTTTATTCACCCCCGATATAAA-GTGAGGGTTTGTTATTATTTTTTTCAAATC-CT
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGT-AGCGTCTGTTATTATTTTGTTCAAA-CGCT
* * *
777979 CCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCCGAAAATAAC
64 CCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAAC
* **
778044 CTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
129 CTCATCGATTCTGGGGATGCTCCAACCTCACCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
*
778109 TCCGACAGAGCTTTTAAACT
194 TCCGACAGAGCTTTTAAACG
* * ** *
778129 TTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGTTCAAACGCTCC
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
* * * *
778194 CCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGCCGAAAATACCCT
66 CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
*
778259 CATCGATTCTGGGGATGCTCCAACCTCACCAGCTACGGCAGGAGTTGTCCCATCCACACTCTCTC
131 CATCGATTCTGGGGATGCTCCAACCTCACCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
778324 C-ATCAGAGCTTTTAAACG
196 CGA-CAGAGCTTTTAAACG
* * * ** *
778342 TTTCAAT-GAGTTTA-GCAGCCCCCGACATTAAGGTAGCGTCTGTTATTATTTTG-TCGAAATGC
1 TTTC-ATCCAATTTATCCA-CCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTC-AAACGC
778404 TCCCC
63 TCCCC
778409 AAAGTCCGTC
Statistics
Matches: 243, Mismatches: 31, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
212 6 0.02
213 234 0.96
214 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.30
Consensus pattern (213 bp):
TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
CATCGATTCTGGGGATGCTCCAACCTCACCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
CGACAGAGCTTTTAAACG
Found at i:783026 original size:213 final size:213
Alignment explanation
Indices: 782608--783050 Score: 656
Period size: 213 Copynumber: 2.1 Consensus size: 213
782598 CTTCGGTCTT
* * * * * * *
782608 GCTTGTAAAATTTTCAACCATTTTATTCACCCCCGATATAAAGTGAGGGTTTGTTATTATTTTTT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
782673 TCAAATCCTCCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCC
66 TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
* *
782738 GAAAATAACCTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATC
131 GAAAATAACCTCATCGATTCTGGGGATGCTCCAACCTCATCAGCTACGGCAGAAGTTGTCCCATC
782803 CACACTCTCTCCGA-CAGA
196 CACACTCTCTCC-ATCAGA
* * * *
782821 GCTTTTAAACTTTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGT
1 GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
* * *
782886 TCAAA-CGCTCCCCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGC
66 TCAAATC-CTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGC
* *
782950 CGAAAATACCCTCATCGATTCTGGGGATGCTCCAACCTCATCAGCTACGGCAGGAGTTGTCCCAT
130 CGAAAATAACCTCATCGATTCTGGGGATGCTCCAACCTCATCAGCTACGGCAGAAGTTGTCCCAT
783015 CCACACTCTCTCCATCAGA
195 CCACACTCTCTCCATCAGA
*
783034 GCTTTTAAACGTTTCAA
1 GCTTTTAAACTTTTCAA
783051 TGAGTTTAGC
Statistics
Matches: 205, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
212 2 0.01
213 203 0.99
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (213 bp):
GCTTTTAAACTTTTCAACCAATTTATCCACCCCCGATAGAAAGTGAGGGTCTGTTATTATTTTGT
TCAAATCCTCCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCC
GAAAATAACCTCATCGATTCTGGGGATGCTCCAACCTCATCAGCTACGGCAGAAGTTGTCCCATC
CACACTCTCTCCATCAGA
Found at i:783088 original size:213 final size:213
Alignment explanation
Indices: 782619--783111 Score: 620
Period size: 213 Copynumber: 2.3 Consensus size: 213
782609 CTTGTAAAAT
* * * * * * * *
782619 TTTCAACCATTTTATTCACCCCCGATATAAA-GTGAGGGTTTGTTATTATTTTTTTCAAATC-CT
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGT-AGCGTCTGTTATTATTTTGTTCAAA-CGCT
* * *
782682 CCCCTTGTATTCCACCCTTTTGCAATCCAAGGATAACGGCGGACATAACTGAAGCCGAAAATAAC
64 CCCCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAAC
* *
782747 CTCATCGATTCTGGGGATGCTGCAACCTCTTCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
129 CTCATCGATTCTGGGGATGCTCCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTC
*
782812 TCCGACAGAGCTTTTAAACT
194 TCCGACAGAGCTTTTAAACG
* * ** *
782832 TTTCATCCAATTTATCCACCGCCGATAGAAATTTAGGGTCTGTTATTATTTTGTTCAAACGCTCC
1 TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
* * * *
782897 CCTTTTATTCCGCCATCTTGCAATCCAAGGATAATGGCGGACACAACTGAAGCCGAAAATACCCT
66 CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
*
782962 CATCGATTCTGGGGATGCTCCAACCTCATCAGCTACGGCAGGAGTTGTCCCATCCACACTCTCTC
131 CATCGATTCTGGGGATGCTCCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
783027 C-ATCAGAGCTTTTAAACG
196 CGA-CAGAGCTTTTAAACG
* * * ** *
783045 TTTCAAT-GAGTTTA-GCAGCCCCCGACATTAAGGTAGCGTCTGTTATTATTTTG-TCGAAATGC
1 TTTC-ATCCAATTTATCCA-CCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTC-AAACGC
783107 TCCCC
63 TCCCC
783112 AAAGTCCGTC
Statistics
Matches: 244, Mismatches: 30, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
212 6 0.02
213 235 0.96
214 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (213 bp):
TTTCATCCAATTTATCCACCCCCGACAGAAAGGTAGCGTCTGTTATTATTTTGTTCAAACGCTCC
CCTTGTATTCCACCATCTTGCAATCCAAGGATAACGGCGGACACAACTGAAGCCGAAAATAACCT
CATCGATTCTGGGGATGCTCCAACCTCATCAGCTACGGCAGAAGTTGTCCCATCCACACTCTCTC
CGACAGAGCTTTTAAACG
Found at i:784068 original size:10 final size:10
Alignment explanation
Indices: 784053--784080 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
784043 CCTTTTAACT
784053 TTTCTGTTTG
1 TTTCTGTTTG
784063 TTTCTGTTTG
1 TTTCTGTTTG
784073 TTTCTGTT
1 TTTCTGTT
784081 CTAACAGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.11, G:0.18, T:0.71
Consensus pattern (10 bp):
TTTCTGTTTG
Found at i:788758 original size:33 final size:30
Alignment explanation
Indices: 788679--788759 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
788669 TATATGAAAT
788679 ATTA-ATTTTAAATATTTATAGTAAATAATA
1 ATTATATTTTAAATATTTA-AGTAAATAATA
* *
788709 ATTAT-TTATAAA-ATTTAATTAGAATATATAA
1 ATTATATTTTAAATATTTAAGTA-AATA-AT-A
788740 ATTATATTTTAAATATTTAA
1 ATTATATTTTAAATATTTAA
788760 ATATAATCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
28 3 0.07
29 9 0.21
30 12 0.29
31 6 0.14
32 6 0.14
33 6 0.14
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.48
Consensus pattern (30 bp):
ATTATATTTTAAATATTTAAGTAAATAATA
Found at i:788774 original size:33 final size:31
Alignment explanation
Indices: 788679--788774 Score: 83
Period size: 33 Copynumber: 3.1 Consensus size: 31
788669 TATATGAAAT
* *
788679 ATTA-ATTTTAAATATTTATAGTAAATAAT-A
1 ATTATATTTTAAATATTTA-AATAAATATTAA
* *
788709 ATTAT-TTATAAA-ATTTAATTAGAATATATAA
1 ATTATATTTTAAATATTTAAATA-AATAT-TAA
788740 ATTATATTTTAAATATTTAAATATAATCATTAA
1 ATTATATTTTAAATATTTAAATA-AAT-ATTAA
788773 AT
1 AT
788775 ATTAATACGG
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
28 3 0.06
29 9 0.17
30 11 0.21
31 6 0.11
32 6 0.11
33 16 0.30
34 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (31 bp):
ATTATATTTTAAATATTTAAATAAATATTAA
Found at i:789691 original size:34 final size:34
Alignment explanation
Indices: 789648--789730 Score: 112
Period size: 34 Copynumber: 2.4 Consensus size: 34
789638 ACAACTCATT
* *
789648 TTGTAAGTTTTCAAGCTCAAAAAATCAATATGTA
1 TTGTAAGTTTTCAAACTCAAAAAATCAATATATA
* * *
789682 TTGTAAGTTTTCAAACTCAAGAAATTAGTATATA
1 TTGTAAGTTTTCAAACTCAAAAAATCAATATATA
*
789716 TTTTAAGTTTTCAAA
1 TTGTAAGTTTTCAAA
789731 TTGGAGAATT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.40
Consensus pattern (34 bp):
TTGTAAGTTTTCAAACTCAAAAAATCAATATATA
Found at i:792644 original size:30 final size:30
Alignment explanation
Indices: 792608--792667 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
792598 ATGCTTTAAA
*
792608 ACGGTTGCAACCTCTTAAATTATTGATTTG
1 ACGGTTGCAACCGCTTAAATTATTGATTTG
792638 ACGGTTGCAACCGCTTAAATTATTGATTTG
1 ACGGTTGCAACCGCTTAAATTATTGATTTG
792668 TTATTAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (30 bp):
ACGGTTGCAACCGCTTAAATTATTGATTTG
Found at i:801792 original size:121 final size:120
Alignment explanation
Indices: 801496--801853 Score: 455
Period size: 121 Copynumber: 2.9 Consensus size: 120
801486 CCAAAATTGC
* * * *
801496 TAGAATAAGATAGTATCTGTTCTCATGATTGTTCAAAGGTTGTGCGTTAGTCCTCTTAATCTGAA
1 TAGAATAAGATAGTATATGTTCTCATGATTGTTCAAAGGCTGTGCATTAATCCTCTTAATCTGAA
* * *
801561 CGGAGGGATTGCAGGGAGGCATTGTAATTTGTAACCAGAAGTTGCATTTTTTCCGTTGTTGG
66 CAGAGGGATTGCAGGGAGGC------A-TTGTAACCCGAAGTTGCATTTTTTCCATTGTTGG
* * *
801623 TAGAATAAGATAGTATATGTTCTCATGATTGTTCAAAGGCTGTACATTACTCCTCTTAATCTGAG
1 TAGAATAAGATAGTATATGTTCTCATGATTGTTCAAAGGCTGTGCATTAATCCTCTTAATCTGAA
801688 CAGAGGGATTGCAGGGAGGCATTGTAACCCGAAGTTGCATTCTTTTCCATTGTTGG
66 CAGAGGGATTGCAGGGAGGCATTGTAACCCGAAGTTGCATT-TTTTCCATTGTTGG
* * * * * *
801744 TGGAATAAGATAGTATTTGTTCTCGTGATTGTTCAAAGGCTGTGCATTAATCTTCCTAATCCGAA
1 TAGAATAAGATAGTATATGTTCTCATGATTGTTCAAAGGCTGTGCATTAATCCTCTTAATCTGAA
* * * *
801809 CAGAGAGATTGCGGTGGAGACGTTGTAACCCGAAGTTGCATTTTT
66 CAGAGGGATTGCAG-GGAGGCATTGTAACCCGAAGTTGCATTTTT
801854 GTTGTACATT
Statistics
Matches: 207, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
120 19 0.09
121 85 0.41
122 25 0.12
127 78 0.38
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.35
Consensus pattern (120 bp):
TAGAATAAGATAGTATATGTTCTCATGATTGTTCAAAGGCTGTGCATTAATCCTCTTAATCTGAA
CAGAGGGATTGCAGGGAGGCATTGTAACCCGAAGTTGCATTTTTTCCATTGTTGG
Found at i:803638 original size:29 final size:29
Alignment explanation
Indices: 803587--803660 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 29
803577 AGAATTGGAT
803587 CAAAATAAAATTTCATGATTAAAATTGTA
1 CAAAATAAAATTTCATGATTAAAATTGTA
803616 CAAAATCAAAATTT-ATG-TATAAAATTGTA
1 CAAAAT-AAAATTTCATGAT-TAAAATTGTA
803645 CATTAAATTAAAATTT
1 CA--AAA-TAAAATTT
803661 GTGAGATAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
28 1 0.03
29 21 0.52
30 7 0.17
31 10 0.25
32 1 0.03
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.36
Consensus pattern (29 bp):
CAAAATAAAATTTCATGATTAAAATTGTA
Found at i:827149 original size:5 final size:5
Alignment explanation
Indices: 827139--827175 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
827129 AAGGCAATTT
827139 TGGTG TGGTG TGGTG TGGTG TGGTG TGGTTG TGGTG T
1 TGGTG TGGTG TGGTG TGGTG TGGTG TGG-TG TGGTG T
827176 CCCTCTATCC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.00, C:0.00, G:0.57, T:0.43
Consensus pattern (5 bp):
TGGTG
Found at i:828566 original size:19 final size:20
Alignment explanation
Indices: 828538--828580 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
828528 CAACAAGTTT
*
828538 AATAATTAAA-AGAATAAAA
1 AATAAATAAAGAGAATAAAA
*
828557 AATAAATAAATGAGAATATAA
1 AATAAATAAA-GAGAATAAAA
828578 AAT
1 AAT
828581 GACATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
21 11 0.55
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (20 bp):
AATAAATAAAGAGAATAAAA
Found at i:842594 original size:12 final size:12
Alignment explanation
Indices: 842577--842607 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
842567 ATTTTATTTA
842577 TTTATATTCATT
1 TTTATATTCATT
*
842589 TTTATATTTATT
1 TTTATATTCATT
842601 TTTATAT
1 TTTATAT
842608 AAACGGGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTATATTCATT
Found at i:857173 original size:20 final size:20
Alignment explanation
Indices: 857136--857174 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
857126 TAGAGACCTA
* **
857136 ATTAAATTAATTTCTTTATT
1 ATTAAATAAATTAATTTATT
857156 ATTAAATAAATTAATTTAT
1 ATTAAATAAATTAATTTAT
857175 AGTGGGTTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTAAATAAATTAATTTATT
Found at i:858525 original size:35 final size:35
Alignment explanation
Indices: 858486--858557 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
858476 CTTATGTAGA
* * *
858486 TTTAATGAATCAAGCTCAACGTATTGAAGTATTAC
1 TTTAATAAATCAAGCTCAACATATTGAAGTATCAC
858521 TTTAATAAATCAAGCTCAACATATTGAAGTATCAC
1 TTTAATAAATCAAGCTCAACATATTGAAGTATCAC
858556 TT
1 TT
858558 GATAGACAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (35 bp):
TTTAATAAATCAAGCTCAACATATTGAAGTATCAC
Found at i:875858 original size:12 final size:12
Alignment explanation
Indices: 875841--875870 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
875831 GTTTAAAAAG
875841 GTTGTATTAACA
1 GTTGTATTAACA
875853 GTTGTATTAACA
1 GTTGTATTAACA
875865 GTTGTA
1 GTTGTA
875871 ATAAGTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (12 bp):
GTTGTATTAACA
Found at i:877843 original size:3 final size:3
Alignment explanation
Indices: 877829--877863 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
877819 GCATCACCTT
*
877829 CTC CTT CTC CTC CTC CTC CTC CTC CTC CTC CTC CT
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CT
877864 ACTACAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (3 bp):
CTC
Found at i:877992 original size:78 final size:78
Alignment explanation
Indices: 877896--878130 Score: 362
Period size: 78 Copynumber: 3.0 Consensus size: 78
877886 GTCGGGCAGA
* * *
877896 GCCAACTAGTGTGACTCAGAAAACCAATTCGACTCTTCCTAATGAAGCTACTGAGTCTGAGGGAC
1 GCCAACTAGTGTGACTCAGAAAACAAATTCGACTCATCCTAATGAAGCTACTGAGTCAGAGGGAC
*
877961 CAGCTTTCTGGAC
66 CGGCTTTCTGGAC
* * *
877974 GCCAACTAGTGTAACTCAGAAAACAAATTCAACTCATCCTAATGAAGCTACAGAGTCAGAGGGAC
1 GCCAACTAGTGTGACTCAGAAAACAAATTCGACTCATCCTAATGAAGCTACTGAGTCAGAGGGAC
*
878039 GGGCTTTCTGGAC
66 CGGCTTTCTGGAC
* * * *
878052 GCCAACTAGTGTGACTCAGAAAACAAATTCGACTCGTCCTAATCAAACTACTGAGTCAGAAGGAC
1 GCCAACTAGTGTGACTCAGAAAACAAATTCGACTCATCCTAATGAAGCTACTGAGTCAGAGGGAC
878117 CGGCTTTCTGGAC
66 CGGCTTTCTGGAC
878130 G
1 G
878131 GCATGTCCGT
Statistics
Matches: 141, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 141 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (78 bp):
GCCAACTAGTGTGACTCAGAAAACAAATTCGACTCATCCTAATGAAGCTACTGAGTCAGAGGGAC
CGGCTTTCTGGAC
Found at i:885682 original size:19 final size:17
Alignment explanation
Indices: 885638--885688 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 17
885628 CACATTCGCT
885638 TAAAAATTTAAAAAATATA
1 TAAAAA-TT-AAAAATATA
885657 TAAAAATCTAAAAAT-TA
1 TAAAAAT-TAAAAATATA
885674 TGAAGAAATTAAAAA
1 T-AA-AAATTAAAAA
885689 GTTTTTCAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.10
18 15 0.52
19 11 0.38
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (17 bp):
TAAAAATTAAAAATATA
Found at i:887403 original size:122 final size:121
Alignment explanation
Indices: 887081--887460 Score: 460
Period size: 122 Copynumber: 3.2 Consensus size: 121
887071 CTTGCTTGAG
* *
887081 AGCTTTGTTCATCTCGTTTTGCCTCATCTGGATTGCTTGGATTGTTGACGAAATTCAGGTTCGAA
1 AGCTTTGTTCATCTTGTTTTGCCTC-TCTGGATTGC-TGGATTGTTGACGAAATTCGGGTTCGAA
* * *
887146 A-TCGAAAGCTTGTTTGAGTTAGTAATTGAAAGGTTCAAGTCCTTTTTTCGA-TCGTGTTTT
64 ACT-GAAAGCTTATTCGAGTTAGTAA-TGAAAGGTTCAAGTCC--TTTTCAATTCGTGTTTT
*
887206 AGCTTTGTTCATCTTGTTTTG-C-CTC---A-T-CTGGATTGTTGATGAAATTCGGGTTCGAAAC
1 AGCTTTGTTCATCTTGTTTTGCCTCTCTGGATTGCTGGATTGTTGACGAAATTCGGGTTCGAAAC
* * * *
887264 TAAAAGCTTATTCGAGTTAGTAAGTGGAAGGTTCGAGTCC-TTTCCATTCGTGTTTT
66 TGAAAGCTTATTCGAGTTAGTAA-TGAAAGGTTCAAGTCCTTTTCAATTCGTGTTTT
887320 AGCTTTGTTCATCTTGTTTTGCCTCGTCTGGATTGCTGGATTGTTGACGAAATTCGGGCTT-GAA
1 AGCTTTGTTCATCTTGTTTTGCCTC-TCTGGATTGCTGGATTGTTGACGAAATTCGGG-TTCGAA
* * *
887384 ACTGAAAGCTCATTCGAGTTAGTAATCGAAAGGATCAAGTCCTTTTCAATT-GTGTTGT
64 ACTGAAAGCTTATTCGAGTTAGTAAT-GAAAGGTTCAAGTCCTTTTCAATTCGTGTTTT
*
887442 AGTTTTGTTCATCTTGTTT
1 AGCTTTGTTCATCTTGTTT
887461 AGATTGTTGT
Statistics
Matches: 223, Mismatches: 19, Indels: 29
0.82 0.07 0.11
Matches are distributed among these distances:
113 5 0.02
114 30 0.13
115 1 0.00
116 61 0.27
117 4 0.02
118 1 0.00
119 1 0.00
120 1 0.00
121 2 0.01
122 86 0.39
123 10 0.04
124 1 0.00
125 20 0.09
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.41
Consensus pattern (121 bp):
AGCTTTGTTCATCTTGTTTTGCCTCTCTGGATTGCTGGATTGTTGACGAAATTCGGGTTCGAAAC
TGAAAGCTTATTCGAGTTAGTAATGAAAGGTTCAAGTCCTTTTCAATTCGTGTTTT
Found at i:891201 original size:6 final size:6
Alignment explanation
Indices: 891190--891243 Score: 81
Period size: 6 Copynumber: 9.0 Consensus size: 6
891180 CCTTAGTAGG
* * *
891190 AGGAGT AGGAGT AGGAGT AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC
1 AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC
891238 AGGAGC
1 AGGAGC
891244 TGCTGAGTGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.33, C:0.11, G:0.50, T:0.06
Consensus pattern (6 bp):
AGGAGC
Found at i:891827 original size:6 final size:6
Alignment explanation
Indices: 891818--891846 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
891808 CGTCTGCGTC
891818 TGCGGT TGCGGT TGCGGT TGCGGT TGCGG
1 TGCGGT TGCGGT TGCGGT TGCGGT TGCGG
891847 AACTTGTGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.17, G:0.52, T:0.31
Consensus pattern (6 bp):
TGCGGT
Found at i:891836 original size:180 final size:182
Alignment explanation
Indices: 891524--891895 Score: 642
Period size: 180 Copynumber: 2.0 Consensus size: 182
891514 TCTAGGGCTT
*
891524 CTCACAAACAGTGATTGCGTAACTTGCGCTTGCGTTTCTTTCAACGGAGTTTGCATGAATAGCGT
1 CTCACAAACAGTGATTGCGTAACTTGCGCTTGCGTTTCTTTCAACGGAGTTTGCATAAATAGCGT
*
891589 TTGGGTTTCTTTCGGCGGTGGTGGTTGCTGCATAAACAGCGTCTGCGTCTGCGTCTGCGGGTGCG
66 TTGCGTTTCTTTCGGCGGTGGTGGTTGCTGCATAAACAGCGTCTGCGTCTGCGTCTGCGGGTGCG
891654 GTTGC-T-GAACTTGTGGCTGTTCTTGTTGATAATGTTGCTGACCGAGTTGA
131 GTTGCGTGGAACTTGTGGCTGTTCTTGTTGATAATGTTGCTGACCGAGTTGA
*
891704 CTCACAAACAGTGATTGCGTAACTTGCGCTTGCGTTTCTTTCAACGGCGTTTGCATAAATAGCGT
1 CTCACAAACAGTGATTGCGTAACTTGCGCTTGCGTTTCTTTCAACGGAGTTTGCATAAATAGCGT
*
891769 TTGCGTTTCTTTCGGCGGTGGTGGTTGCTGCATAAACAGCGTCTGCGTCTGCGGT-TGCGGTTGC
66 TTGCGTTTCTTTCGGCGGTGGTGGTTGCTGCATAAACAGCGTCTGCGTCTGC-GTCTGCGGGTGC
891833 GGTTGCGGTTGCGGAACTTGTGGCTGTTCTTGTTGATAATGTTGCTGACCGAGTTGA
130 GGTTGC-G-T--GGAACTTGTGGCTGTTCTTGTTGATAATGTTGCTGACCGAGTTGA
891890 CTCACA
1 CTCACA
891896 TGACCAAACT
Statistics
Matches: 181, Mismatches: 4, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
180 128 0.71
181 2 0.01
183 1 0.01
186 50 0.28
ACGTcount: A:0.16, C:0.20, G:0.30, T:0.34
Consensus pattern (182 bp):
CTCACAAACAGTGATTGCGTAACTTGCGCTTGCGTTTCTTTCAACGGAGTTTGCATAAATAGCGT
TTGCGTTTCTTTCGGCGGTGGTGGTTGCTGCATAAACAGCGTCTGCGTCTGCGTCTGCGGGTGCG
GTTGCGTGGAACTTGTGGCTGTTCTTGTTGATAATGTTGCTGACCGAGTTGA
Found at i:894474 original size:20 final size:20
Alignment explanation
Indices: 894451--894488 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
894441 TATGGGTATG
894451 TTTCCGATG-ATATGCAAGTT
1 TTTCC-ATGTATATGCAAGTT
*
894471 TTTCCATGTATTTGCAAG
1 TTTCCATGTATATGCAAG
894489 ATCATTATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (20 bp):
TTTCCATGTATATGCAAGTT
Found at i:901078 original size:29 final size:29
Alignment explanation
Indices: 901019--901078 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
901009 TTATTTCCTG
**
901019 TATATTTTAAAATTTTAAAATTTAATTTT
1 TATATTTTAAAATTTTAAAATTTAAAATT
* *
901048 TATATTTTTAGATTTTAAAATTTAAAATT
1 TATATTTTAAAATTTTAAAATTTAAAATT
901077 TA
1 TA
901079 ACTGTTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (29 bp):
TATATTTTAAAATTTTAAAATTTAAAATT
Found at i:912171 original size:15 final size:15
Alignment explanation
Indices: 912141--912173 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
912131 TAGATTTGAT
912141 AATTTTTTAAATAAA
1 AATTTTTTAAATAAA
912156 AATTTGTTTAAA-AAA
1 AATTT-TTTAAATAAA
912171 AAT
1 AAT
912174 AGAAAGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
AATTTTTTAAATAAA
Found at i:917565 original size:6 final size:6
Alignment explanation
Indices: 917554--917585 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
917544 TCCCGGGAAG
917554 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AA
917586 CTCTACTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:926248 original size:3 final size:3
Alignment explanation
Indices: 926235--926268 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
926225 ATAAACCCAG
926235 TTC TATC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC T-TC TTC TTC TTC TTC TTC TTC TTC TTC TTC
926269 AATATAGGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:926293 original size:88 final size:90
Alignment explanation
Indices: 926181--926357 Score: 313
Period size: 88 Copynumber: 2.0 Consensus size: 90
926171 AAAAGGACAA
* *
926181 AATATAGGGAAAATCATACTATAAAAACCACAATAATTCAAAACATAAACCCAGTTCTATCT-TC
1 AATATAGGGAAAATCATACCATAAAAACCACAATAATTCAAAACATAAACCCAGTTATATCTATC
926245 -TTCTTCTTCTTCTTCTTCTTCTTC
66 TTTCTTCTTCTTCTTCTTCTTCTTC
926269 AATATAGGGAAAATCATACCATAAAAACCACAATAATTCAAAACATAAACCCAGTTATATCTATC
1 AATATAGGGAAAATCATACCATAAAAACCACAATAATTCAAAACATAAACCCAGTTATATCTATC
*
926334 TTTCTTCTTCTTCTTTTTCTTCTT
66 TTTCTTCTTCTTCTTCTTCTTCTT
926358 GTTTCTTCAT
Statistics
Matches: 84, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
88 60 0.71
89 2 0.02
90 22 0.26
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.37
Consensus pattern (90 bp):
AATATAGGGAAAATCATACCATAAAAACCACAATAATTCAAAACATAAACCCAGTTATATCTATC
TTTCTTCTTCTTCTTCTTCTTCTTC
Found at i:928670 original size:92 final size:91
Alignment explanation
Indices: 928497--928700 Score: 216
Period size: 92 Copynumber: 2.2 Consensus size: 91
928487 TCTCACGTTT
* * * * * * *
928497 GGGTTTGAA-TATATTTTTTGTTTAAATTAATCCTTGAACTTGATAATTGTTCCCATGTTGAAGC
1 GGGTTTGAACT-TTTTTTTTGTCTAAATTAACCCATGAACTTGATAATTGTTCCAATCTGGAAGC
*** *
928561 TTAATCTAGGCAATTGTTTTTATGTTG
65 TTAATCTAGGCAATTGTTCACATATTG
* *
928588 GGGTTTGAACTTTTTCTTTTGTCTAAATTAACCCATGAACTTGGTAATTGTTCCAATACTGGGA-
1 GGGTTTGAACTTTTT-TTTTGTCTAAATTAACCCATGAACTTGATAATTGTTCCAAT-CTGGAAG
* *
928652 CTTGAA-CTATGCATTTGTTCACATATTG
64 CTT-AATCTAGGCAATTGTTCACATATTG
928680 GGGTTTGAACTTTTTTTTTGT
1 GGGTTTGAACTTTTTTTTTGT
928701 TTTATTAGCT
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
91 18 0.19
92 71 0.76
93 5 0.05
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.46
Consensus pattern (91 bp):
GGGTTTGAACTTTTTTTTTGTCTAAATTAACCCATGAACTTGATAATTGTTCCAATCTGGAAGCT
TAATCTAGGCAATTGTTCACATATTG
Found at i:935566 original size:2 final size:2
Alignment explanation
Indices: 935559--935593 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
935549 TCTGTGCTTT
935559 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
935594 TTAATTTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:943516 original size:18 final size:17
Alignment explanation
Indices: 943490--943523 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
943480 TACTTATAAC
943490 TTAAATTATTAATTTGTT
1 TTAAATTA-TAATTTGTT
*
943508 TTAATTTATAATTTGT
1 TTAAATTATAATTTGT
943524 AAATATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TTAAATTATAATTTGTT
Found at i:944362 original size:31 final size:30
Alignment explanation
Indices: 944321--944400 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
944311 TTTATTTAGA
944321 TACCAAATTGAATATTAAAGCGAAACTTAAG
1 TACCAAATTGAATATTAAAGC-AAACTTAAG
* * * *
944352 TATCAAATTGAACATTAAAATCAAATTTAAG
1 TACCAAATTGAATATT-AAAGCAAACTTAAG
944383 TACCAAATT-ATATATTAA
1 TACCAAATTGA-ATATTAA
944401 CCTTCTTTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
30 3 0.07
31 34 0.83
32 4 0.10
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.31
Consensus pattern (30 bp):
TACCAAATTGAATATTAAAGCAAACTTAAG
Found at i:954673 original size:22 final size:24
Alignment explanation
Indices: 954639--954687 Score: 68
Period size: 22 Copynumber: 2.1 Consensus size: 24
954629 AATTACAAGT
954639 ATGACAAAGTGAAAACAAAA-GAAA
1 ATGACAAAGTGAAAA-AAAAGGAAA
954663 ATGA-AAA-TGAAAAAAAAGGAAA
1 ATGACAAAGTGAAAAAAAAGGAAA
954685 ATG
1 ATG
954688 TTACTCACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.17
22 13 0.54
23 3 0.12
24 4 0.17
ACGTcount: A:0.67, C:0.04, G:0.18, T:0.10
Consensus pattern (24 bp):
ATGACAAAGTGAAAAAAAAGGAAA
Found at i:954679 original size:16 final size:17
Alignment explanation
Indices: 954655--954687 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
954645 AAGTGAAAAC
*
954655 AAAAGAAAATGAAAATG
1 AAAAGAAAAGGAAAATG
954672 AAAA-AAAAGGAAAATG
1 AAAAGAAAAGGAAAATG
954688 TTACTCACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.09
Consensus pattern (17 bp):
AAAAGAAAAGGAAAATG
Found at i:961196 original size:2 final size:2
Alignment explanation
Indices: 961185--961219 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
961175 CAGGATCTGC
961185 AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
961220 TATGAATCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:961573 original size:72 final size:73
Alignment explanation
Indices: 961491--961636 Score: 240
Period size: 74 Copynumber: 2.0 Consensus size: 73
961481 TTATTTCAAG
* *
961491 AATTTGATCTTAATTTTATGTCTACCAAATGAGG-TTTTTTTTTAAATTTCAAAAAATGTCATAC
1 AATTTAATCTTAATTTTATGTCTACCAAATGAGGTTTTTTTTTTAAATTTCAAAAAATATCATAC
961555 TAACAAAT
66 TAACAAAT
*
961563 AATTTAATCTTAGTTTTATGTCTACCAAATGAGGTTTTTTTTTTTAAATTTCAAAAAATATCATA
1 AATTTAATCTTAATTTTATGTCTACCAAATGAGG-TTTTTTTTTTAAATTTCAAAAAATATCATA
*
961628 CTAATAAAT
65 CTAACAAAT
961637 TTAATAAAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
72 32 0.47
74 36 0.53
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.45
Consensus pattern (73 bp):
AATTTAATCTTAATTTTATGTCTACCAAATGAGGTTTTTTTTTTAAATTTCAAAAAATATCATAC
TAACAAAT
Found at i:962286 original size:15 final size:15
Alignment explanation
Indices: 962266--962296 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
962256 AAAATTTTAA
962266 GGCACGAGATTAGGG
1 GGCACGAGATTAGGG
962281 GGCACGAGATTAGGG
1 GGCACGAGATTAGGG
962296 G
1 G
962297 AGTTTGTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.48, T:0.13
Consensus pattern (15 bp):
GGCACGAGATTAGGG
Found at i:964334 original size:34 final size:34
Alignment explanation
Indices: 964296--964366 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
964286 CTTGATCCTC
* *
964296 AAACACATAAATAAATATAGATATAATTATATTT
1 AAACACATAAATAAATATAGATAAAATTATATGT
* *
964330 AAACACATAATTAAATATTGATAAAATTATATGT
1 AAACACATAAATAAATATAGATAAAATTATATGT
964364 AAA
1 AAA
964367 TTTGTGATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.56, C:0.06, G:0.04, T:0.34
Consensus pattern (34 bp):
AAACACATAAATAAATATAGATAAAATTATATGT
Found at i:975022 original size:18 final size:18
Alignment explanation
Indices: 974976--975022 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
974966 CACATTTTGT
974976 AATATTTATA-T-TATTG
1 AATATTTATATTATATTG
*
974992 AAT-TTTTTAATTATATTG
1 AATATTTAT-ATTATATTG
975010 AATATTTATATTA
1 AATATTTATATTA
975023 AAATTGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 4 0.16
16 4 0.16
17 1 0.04
18 12 0.48
19 4 0.16
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (18 bp):
AATATTTATATTATATTG
Found at i:977516 original size:38 final size:38
Alignment explanation
Indices: 977421--977524 Score: 136
Period size: 42 Copynumber: 2.6 Consensus size: 38
977411 GAAAATGACG
* * *
977421 AGTTTAATCATAAAAAGTCAGGATTGAAATAGCAACTC
1 AGTTTAATCATAAAAAGTCAGAATTAAAATAACAACTC
*
977459 AGTTAATTTAATCATAAAAAGTTAGAATTAAAATAACAACTC
1 AG----TTTAATCATAAAAAGTCAGAATTAAAATAACAACTC
977501 AGTTTAATCATAAAAAGTCAGAAT
1 AGTTTAATCATAAAAAGTCAGAAT
977525 CTCCCCTCAA
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
38 23 0.40
42 34 0.60
ACGTcount: A:0.49, C:0.11, G:0.12, T:0.29
Consensus pattern (38 bp):
AGTTTAATCATAAAAAGTCAGAATTAAAATAACAACTC
Found at i:977521 original size:19 final size:20
Alignment explanation
Indices: 977464--977522 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 20
977454 AACTCAGTTA
*
977464 ATTTAATCATAAAAAGTTAG
1 ATTTAATCATAAAAAGTCAG
* * * *
977484 AATTAA-AATAACAACTCAG
1 ATTTAATCATAAAAAGTCAG
977503 -TTTAATCATAAAAAGTCAG
1 ATTTAATCATAAAAAGTCAG
977522 A
1 A
977523 ATCTCCCCTC
Statistics
Matches: 28, Mismatches: 9, Indels: 4
0.68 0.22 0.10
Matches are distributed among these distances:
18 4 0.14
19 19 0.68
20 5 0.18
ACGTcount: A:0.53, C:0.10, G:0.08, T:0.29
Consensus pattern (20 bp):
ATTTAATCATAAAAAGTCAG
Found at i:980684 original size:17 final size:18
Alignment explanation
Indices: 980654--980687 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
980644 CGTAAACTGA
*
980654 AAATAAAAATAACTAAAG
1 AAATAAAAACAACTAAAG
980672 AAAT-AAAACAACTAAA
1 AAATAAAAACAACTAAA
980688 CCTAAATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.09, G:0.03, T:0.15
Consensus pattern (18 bp):
AAATAAAAACAACTAAAG
Found at i:984808 original size:15 final size:15
Alignment explanation
Indices: 984788--984825 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
984778 ATATAATGAT
984788 ATATATGTGAGAAAA
1 ATATATGTGAGAAAA
* *
984803 ATATATGTGTGAAAT
1 ATATATGTGAGAAAA
984818 AT-TATGTG
1 ATATATGTG
984826 GTTAATTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (15 bp):
ATATATGTGAGAAAA
Found at i:985107 original size:41 final size:41
Alignment explanation
Indices: 985060--985159 Score: 100
Period size: 38 Copynumber: 2.5 Consensus size: 41
985050 CGACCTTGAG
** * *
985060 TCGATGAGACACTGGGTGTCATTATTTTACTTCGGATAGAT
1 TCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAGAC
** * *
985101 TCGATGAGGTACT-GG-GT-ACCACTTTACTTCGGCTAGGC
1 TCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAGAC
985139 T-GATGAGACACTGGGTGTCAC
1 TCGATGAGACACTGGGTGTCAC
985160 TTTATTGCTT
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
37 9 0.20
38 18 0.39
39 4 0.09
40 4 0.09
41 11 0.24
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (41 bp):
TCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAGAC
Found at i:988712 original size:35 final size:35
Alignment explanation
Indices: 988651--988724 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
988641 TACATCGTAT
* * * * *
988651 TAAGTCAACCTTAAAAAGGTTGGGATAGATCCATC
1 TAAGACAACCTTAAAAAGATTAGGATAAACCCATC
*
988686 TAAGACAACCTTACAAAGATTAGGATAAACCCATC
1 TAAGACAACCTTAAAAAGATTAGGATAAACCCATC
988721 TAAG
1 TAAG
988725 GTTGGGATAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (35 bp):
TAAGACAACCTTAAAAAGATTAGGATAAACCCATC
Found at i:989314 original size:14 final size:13
Alignment explanation
Indices: 989290--989325 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
989280 AGGTTTAGGC
989290 TTTGGGTTCAAGG
1 TTTGGGTTCAAGG
989303 TTTGGTGTTCAAGG
1 TTTGG-GTTCAAGG
989317 TTTGAGGTT
1 TTTG-GGTT
989326 AAATGTTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.24
14 15 0.71
15 1 0.05
ACGTcount: A:0.14, C:0.06, G:0.36, T:0.44
Consensus pattern (13 bp):
TTTGGGTTCAAGG
Found at i:989405 original size:15 final size:15
Alignment explanation
Indices: 989370--989411 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
989360 TATTTGTTAT
989370 GAGTTTATGG-TTTA
1 GAGTTTATGGTTTTA
989384 GTA-TTTATGGTTTTA
1 G-AGTTTATGGTTTTA
*
989399 GAGTTTAGGGTTT
1 GAGTTTATGGTTT
989412 GAGGTTTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (15 bp):
GAGTTTATGGTTTTA
Found at i:989425 original size:19 final size:19
Alignment explanation
Indices: 989401--989437 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
989391 TGGTTTTAGA
989401 GTTTAGGGTTTGAGGTTTT
1 GTTTAGGGTTTGAGGTTTT
*
989420 GTTTAGGGTTTGGGGTTT
1 GTTTAGGGTTTGAGGTTT
989438 AGAGTTCTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.00, G:0.41, T:0.51
Consensus pattern (19 bp):
GTTTAGGGTTTGAGGTTTT
Found at i:989957 original size:126 final size:126
Alignment explanation
Indices: 989719--990251 Score: 459
Period size: 126 Copynumber: 4.0 Consensus size: 126
989709 TATCGACCCA
* * * *
989719 AAAGTGTCGTCATAGTGTTGGACAAAGCTGACTCTTGTTTAAGCGTTGCCTTAGGCATACATATC
1 AAAGTGTCGGCATAGTGTTGGACAAAGCTGACTCTTATTTAAGCGTTCCCTTAGGCATGCATATC
* *
989784 CCAACCCTTATACAAAGAGTTGGCCAAAGCATATGTC-AGCAACTCTATCCCAACACTTAGG
66 CCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTCGA-CAAGTCTATCCCAACACTTAGG
* * * *
989845 AAAGTGTCGGCATAGTGTTAGACAAAGCTAACTCTTATTTAAACGTTCCCTTAGACATGCATATC
1 AAAGTGTCGGCATAGTGTTGGACAAAGCTGACTCTTATTTAAGCGTTCCCTTAGGCATGCATATC
*
989910 CCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGCCGACAAGTCTATCCCAACACTTAGG
66 CCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGG
* * *
989971 AAAGTGTTGCCCAAAAGTGTCACCATAGTGTTGGAAAAAGCCGACTCTTATTTAAGCGTTTCCTT
1 AAAGTG-T---C----G-G----CATAGTGTTGGACAAAGCTGACTCTTATTTAAGCGTTCCCTT
* * *** **
990036 AGGCATGCCTATCCGAACCCTTTTATA-AAAGAGTTGAAAAAAGCGTATGTCGGTAAGTCTATCC
53 AGGCATGCATATCCCAACCC--TTATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCC
990100 CAACACTTAGG
116 CAACACTTAGG
* * * *
990111 AAAGTGTCGCCCCAAAGGTGTTGAAAAAGTGTTGGACAAAGC-CATCTCTTATTCAAGCGGGT--
1 AAAGTGTCG--GC--A-----T-----AGTGTTGGACAAAGCTGA-CTCTTATTTAAGC-GTTCC
* * * *
990173 CTTAGACATGCATATCTCAACCCTTATACAAAGAGTTGGCCAAAGCGTATAT-TAGCAAGTCTAT
50 CTTAGGCATGCATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTCGA-CAAGTCTAT
990237 CCCAACACTT-GG
114 CCCAACACTTAGG
990249 AAA
1 AAA
990252 ATTGTCGCCG
Statistics
Matches: 331, Mismatches: 43, Indels: 54
0.77 0.10 0.13
Matches are distributed among these distances:
126 119 0.36
127 2 0.01
129 1 0.00
130 1 0.00
131 1 0.00
132 1 0.00
134 1 0.00
135 1 0.00
136 2 0.01
138 10 0.03
139 91 0.27
140 68 0.21
141 31 0.09
142 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (126 bp):
AAAGTGTCGGCATAGTGTTGGACAAAGCTGACTCTTATTTAAGCGTTCCCTTAGGCATGCATATC
CCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGG
Found at i:990177 original size:140 final size:140
Alignment explanation
Indices: 989893--990270 Score: 446
Period size: 139 Copynumber: 2.7 Consensus size: 140
989883 TTAAACGTTC
* *
989893 CCTTAGACATGCATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGCCGACAAGTCTAT
1 CCTTAGACATGCATAT-CCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCTAT
* * *
989958 CCCAACACTTAGGAAAGTGTTG-CCCAAAAGTG-TCACCATAGTGTTGGAAAAAGCCGACTCTTA
65 CCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTTCACAAAAGTGTTGGAAAAAGCCGACTCTTA
* **
990021 TTTAAGCGTTT
130 TTCAAGCGGGT
* * *** *
990032 CCTTAGGCATGCCTATCCGAACCCTTTTATA-AAAGAGTTGAAAAAAGCGTATGTCGGTAAGTCT
1 CCTTAGACATGCATATCC-AACCC--TTATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCT
* * *
990096 ATCCCAACACTTAGGAAAGTGTCGCCCCAAAGGTGTTGA-AAAAGTGTTGGACAAAGCC-ATCTC
63 ATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTTCACAAAAGTGTTGGAAAAAGCCGA-CTC
990159 TTATTCAAGCGGGT
127 TTATTCAAGCGGGT
* **
990173 -CTTAGACATGCATATCTCAACCCTTATACAAAGAGTTGGCCAAAGCGTATATTAGCAAGTCTAT
1 CCTTAGACATGCATATC-CAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCTAT
* *
990237 CCCAACACTT-GGAAAATTGTCGCCGCAAAAGTGT
65 CCCAACACTTAGG-AAAGTGTCGCCCCAAAAGTGT
990271 CATATTAGGA
Statistics
Matches: 201, Mismatches: 29, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
138 9 0.04
139 75 0.37
140 70 0.35
141 45 0.22
142 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (140 bp):
CCTTAGACATGCATATCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCTATC
CCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTTCACAAAAGTGTTGGAAAAAGCCGACTCTTAT
TCAAGCGGGT
Found at i:994002 original size:17 final size:17
Alignment explanation
Indices: 993980--994018 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
993970 AGGTGAAGAA
* *
993980 CTTGTTCATTGAGAGTT
1 CTTGTTCATAGAGAATT
993997 CTTGTTCATAGAGAATT
1 CTTGTTCATAGAGAATT
994014 CTTGT
1 CTTGT
994019 CAAGATGGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.13, G:0.21, T:0.46
Consensus pattern (17 bp):
CTTGTTCATAGAGAATT
Found at i:994069 original size:41 final size:41
Alignment explanation
Indices: 994008--994103 Score: 156
Period size: 41 Copynumber: 2.3 Consensus size: 41
993998 TTGTTCATAG
* *
994008 AGAATTCTTGTCAAGATGGAGATTGTTAGAATTGAGTGACT
1 AGAATTCTTGTTAAGATGGAGATTGTTAGAACTGAGTGACT
* *
994049 AGAATTCTTGTTAAGGTGGAGATTGTTAGAACTGGGTGACT
1 AGAATTCTTGTTAAGATGGAGATTGTTAGAACTGAGTGACT
994090 AGAATTCTTGTTAA
1 AGAATTCTTGTTAA
994104 AATAAAATTC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.35
Consensus pattern (41 bp):
AGAATTCTTGTTAAGATGGAGATTGTTAGAACTGAGTGACT
Found at i:997678 original size:16 final size:18
Alignment explanation
Indices: 997657--997690 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
997647 TTAGATTGAG
997657 TATTTAAC-ATTT-TTTA
1 TATTTAACTATTTATTTA
997673 TATTTAACTATTTATTTA
1 TATTTAACTATTTATTTA
997691 ATCTCACTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTAACTATTTATTTA
Found at i:1001518 original size:87 final size:87
Alignment explanation
Indices: 1001371--1001634 Score: 388
Period size: 87 Copynumber: 3.0 Consensus size: 87
1001361 GTAGTAGGAC
* * * * * *
1001371 AAGAGGAGAATCCTTTTGATGAG-GTACCATCTCCGGAAGCCGAAAGGATACTTTTCAGTTCAAG
1 AAGAGGAGAATCCTTTTGATG-GCATACCACCTCCGGAAACCGAAAGGGTACTTTTGAGTTCAGG
1001435 GGAGGCAGCATCTCCAGAATCGG
65 GGAGGCAGCATCTCCAGAATCGG
* *
1001458 AAGAGGAGAAT-TTGTTTGATGGCATGCCACCTCCGGAAACCGAAAGGGTACTTTTGAGTTCAGG
1 AAGAGGAGAATCCT-TTTGATGGCATACCACCTCCGGAAACCGAAAGGGTACTTTTGAGTTCAGG
1001522 GGAGGCAGCATCTCCAGAATCGG
65 GGAGGCAGCATCTCCAGAATCGG
* *
1001545 AAGAGGAGAATCCTTTTGATGGCATACCACCTCCAGAAACTGAAAGGGTACTTTTGAGTTCAGGG
1 AAGAGGAGAATCCTTTTGATGGCATACCACCTCCGGAAACCGAAAGGGTACTTTTGAGTTCAGGG
* *
1001610 GAGGCAGCATCCCCAAAATCGG
66 GAGGCAGCATCTCCAGAATCGG
1001632 AAG
1 AAG
1001635 TAGAAGCTCC
Statistics
Matches: 160, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
86 2 0.01
87 157 0.98
88 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.21
Consensus pattern (87 bp):
AAGAGGAGAATCCTTTTGATGGCATACCACCTCCGGAAACCGAAAGGGTACTTTTGAGTTCAGGG
GAGGCAGCATCTCCAGAATCGG
Found at i:1004762 original size:59 final size:59
Alignment explanation
Indices: 1004686--1005161 Score: 653
Period size: 59 Copynumber: 8.1 Consensus size: 59
1004676 GGGGCAGTAC
* * *
1004686 GGTAA-TTTTGGTAAAATCAAGGTTTAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAT
1 GGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAT
* * *
1004744 AGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAA-TTTGGGAAGTTTAGGGGTAAAAT
1 GGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAT
* * * *
1004802 GGTAATTTTTGGTGAAACCGGGGTTAAAAATGAAATTTTAGAAAGTTTAGGGGTAAAAT
1 GGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAT
* *
1004861 GGTAATTTTCGGT-AAGA-CTAGGGTTAAAAATGGAATTTTGGAAGGTTTAGGGGTAAAAT
1 GGTAATTTTTGGTGAA-ATC-AGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAT
* * * * *
1004920 GGTAATTTTCGATGAAACCAGGGTTAAAAATGGAATTTTGGACAGTTT-GGCGCTAAAAT
1 GGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGG-GGTAAAAT
* * *
1004979 GGTAATTTTAGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAAT
1 GGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAT
* *
1005038 GGTAATTTTTGATGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAAT
1 GGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAT
*
1005097 GGTAATTTTTGGTAAAATC-GGGTTAAAAATGGAATTTTGG-AAGTTT-GAGGGTAAAAT
1 GGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTAG-GGGTAAAAT
1005154 GGTAATTT
1 GGTAATTT
1005162 CAAAAGTTTC
Statistics
Matches: 378, Mismatches: 31, Indels: 19
0.88 0.07 0.04
Matches are distributed among these distances:
56 1 0.00
57 23 0.06
58 84 0.22
59 265 0.70
60 5 0.01
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (59 bp):
GGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAT
Found at i:1005126 original size:30 final size:29
Alignment explanation
Indices: 1004974--1005134 Score: 109
Period size: 29 Copynumber: 5.4 Consensus size: 29
1004964 GTTTGGCGCT
* *
1004974 AAAATGGTAATTTTAGGTGAAATCGGGGTTA
1 AAAATGG-AATTTTTGGTAAAATC-GGGTTA
* * *
1005005 AAAATGGAA-TTTTGG-AAAGTTTGGGGGT-
1 AAAATGGAATTTTTGGTAAA--ATCGGGTTA
* *
1005033 AAAATGGTAATTTTTGATGAAATCAGGGTTA
1 AAAATGG-AATTTTTGGTAAAATC-GGGTTA
* * *
1005064 AAAATGGAA-TTTTGG-AAAGTTTGGGGGT-
1 AAAATGGAATTTTTGGTAAA--ATCGGGTTA
1005092 AAAATGGTAATTTTTGGTAAAATCGGGTTA
1 AAAATGG-AATTTTTGGTAAAATCGGGTTA
1005122 AAAATGGAATTTT
1 AAAATGGAATTTT
1005135 GGAAGTTTGA
Statistics
Matches: 99, Mismatches: 18, Indels: 28
0.68 0.12 0.19
Matches are distributed among these distances:
28 18 0.18
29 34 0.34
30 28 0.28
31 19 0.19
ACGTcount: A:0.36, C:0.02, G:0.28, T:0.34
Consensus pattern (29 bp):
AAAATGGAATTTTTGGTAAAATCGGGTTA
Found at i:1005176 original size:28 final size:28
Alignment explanation
Indices: 1005137--1005217 Score: 71
Period size: 28 Copynumber: 2.9 Consensus size: 28
1005127 GGAATTTTGG
1005137 AAGTTTGAGGGT-AAAATGGTAATTTCAA
1 AAGTTTGAGGGTCAAAAT-GTAATTTCAA
*
1005165 AAGTTTCG-GGGTCAGAATGTAATTTCCTAA
1 AAGTTT-GAGGGTCAAAATGTAATTT-C-AA
* *
1005195 AA-TTTTAGGGTC-AAATGCAATTT
1 AAGTTTGAGGGTCAAAATGTAATTT
1005218 TTGGACTGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
28 26 0.59
29 14 0.32
30 4 0.09
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.35
Consensus pattern (28 bp):
AAGTTTGAGGGTCAAAATGTAATTTCAA
Found at i:1005925 original size:22 final size:23
Alignment explanation
Indices: 1005897--1005939 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
1005887 TATTTCTTCC
1005897 CTTTTTTCTTCCTTT-TTGTTTT
1 CTTTTTTCTTCCTTTATTGTTTT
*
1005919 CTTTTTTCTTTCTTTATTGTT
1 CTTTTTTCTTCCTTTATTGTT
1005940 AAAACAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.77
Consensus pattern (23 bp):
CTTTTTTCTTCCTTTATTGTTTT
Found at i:1006958 original size:31 final size:28
Alignment explanation
Indices: 1006938--1007012 Score: 105
Period size: 31 Copynumber: 2.5 Consensus size: 28
1006928 TTAGTATTTT
*
1006938 AATTTAAATTTAAATTTAAATTTAAGGTA
1 AATTTAAATTTAAATTTAAATTT-AGATA
1006967 AATTTAAATAATTAAATTTAAATTTAAGATA
1 AATTTAAAT--TTAAATTTAAATTT-AGATA
1006998 AATTTAAATTTAAAT
1 AATTTAAATTTAAAT
1007013 AAACTTAAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
29 15 0.35
31 28 0.65
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (28 bp):
AATTTAAATTTAAATTTAAATTTAGATA
Found at i:1006961 original size:6 final size:6
Alignment explanation
Indices: 1006907--1007012 Score: 92
Period size: 6 Copynumber: 17.2 Consensus size: 6
1006897 TTCTTGGACT
* * *
1006907 TTTAATA TTTAATG TTTAAA TTTAGTA TTTTAA TTTAAA TTTAAA TTTAAA
1 TTTAA-A TTTAA-A TTTAAA TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA
**
1006958 TTT-AA GGTAAA TTTAAA TAATTAAA TTTAAA TTTAAGA --TAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA T--TTAAA TTTAAA TTTAA-A TTTAAA TTTAAA
1007006 TTTAAA T
1 TTTAAA T
1007013 AAACTTAAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
4 1 0.01
5 6 0.07
6 53 0.65
7 16 0.20
8 6 0.07
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:1006968 original size:11 final size:11
Alignment explanation
Indices: 1006954--1007004 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
1006944 AATTTAAATT
*
1006954 TAAATTTAAGG
1 TAAATTTAAGA
1006965 TAAATTTAA-A
1 TAAATTTAAGA
* **
1006975 T-AATTAAATT
1 TAAATTTAAGA
1006985 TAAATTTAAGA
1 TAAATTTAAGA
1006996 TAAATTTAA
1 TAAATTTAA
1007005 ATTTAAATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
9 6 0.19
10 2 0.06
11 24 0.75
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (11 bp):
TAAATTTAAGA
Found at i:1006968 original size:17 final size:17
Alignment explanation
Indices: 1006948--1007021 Score: 93
Period size: 17 Copynumber: 4.6 Consensus size: 17
1006938 AATTTAAATT
*
1006948 TAAATTTAAATTTAAGG
1 TAAATTTAAATTTAAGA
*
1006965 TAAATTTAAA--TAA-T
1 TAAATTTAAATTTAAGA
1006979 TAAATTTAAATTTAAGA
1 TAAATTTAAATTTAAGA
1006996 TAAATTTAAATTTAA-A
1 TAAATTTAAATTTAAGA
*
1007012 TAAACTTAAA
1 TAAATTTAAA
1007022 ATCAATTTAA
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
14 10 0.20
15 3 0.06
16 13 0.25
17 25 0.49
ACGTcount: A:0.54, C:0.01, G:0.04, T:0.41
Consensus pattern (17 bp):
TAAATTTAAATTTAAGA
Found at i:1007006 original size:37 final size:37
Alignment explanation
Indices: 1006941--1007014 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
1006931 GTATTTTAAT
*
1006941 TTAAATTTAAATTTAAATTTAAGGTAAATTTAAATAA
1 TTAAATTTAAATTTAAATTAAAGGTAAATTTAAATAA
**
1006978 TTAAATTTAAATTTAAGA-TAAATTTAAATTTAAATAA
1 TTAAATTTAAATTTAA-ATTAAAGGTAAATTTAAATAA
1007015 ACTTAAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.97
38 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (37 bp):
TTAAATTTAAATTTAAATTAAAGGTAAATTTAAATAA
Found at i:1007439 original size:76 final size:76
Alignment explanation
Indices: 1007308--1007992 Score: 1147
Period size: 76 Copynumber: 9.0 Consensus size: 76
1007298 TGCTCTTTAG
* * * * * *
1007308 AGAGATAAGGACTTGCTATCCAACTTTACTTCAATTTCAAGAGGATGGGAGACGATCTTGCTCTT
1 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1007373 ACTTCAATTTC
66 ACTTCAATTTC
* * *
1007384 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGGGAAACGATCTTACTCTT
1 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1007449 ACTTCAACTTT-
66 ACTTCAA-TTTC
1007460 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1007525 ACTTCAATTTC
66 ACTTCAATTTC
1007536 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1007601 ACTTCAATTTC
66 ACTTCAATTTC
* * * * *
1007612 AGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTCTT
1 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1007677 ACTTCAATTTC
66 ACTTCAATTTC
1007688 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1007753 ACTTCAATTTC
66 ACTTCAATTTC
*
1007764 AGAGATAAAGGCTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1007829 ACTTCAATTTC
66 ACTTCAATTTC
* * *
1007840 AGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1007905 ACTTCAATTTC
66 ACTTCAATTTC
* * * * *
1007916 AGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTCTT
1 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
1007981 ACTTCAATTTC
66 ACTTCAATTTC
1007992 A
1 A
1007993 AGAGGATGGG
Statistics
Matches: 582, Mismatches: 25, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
75 3 0.01
76 576 0.99
77 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (76 bp):
AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTT
ACTTCAATTTC
Found at i:1007989 original size:342 final size:342
Alignment explanation
Indices: 1007637--1008334 Score: 1396
Period size: 342 Copynumber: 2.0 Consensus size: 342
1007627 ATATCCAGCT
1007637 TTACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
1 TTACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
1007702 GTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGA
66 GTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGA
1007767 GATAAAGGCTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACT
131 GATAAAGGCTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACT
1007832 TCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGTGAAATGATC
196 TCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGTGAAATGATC
1007897 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGAT
261 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGAT
1007962 GGGAAACGATCTTGCTC
326 GGGAAACGATCTTGCTC
1007979 TTACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
1 TTACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
1008044 GTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGA
66 GTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGA
1008109 GATAAAGGCTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACT
131 GATAAAGGCTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACT
1008174 TCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGTGAAATGATC
196 TCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGTGAAATGATC
1008239 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGAT
261 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGAT
1008304 GGGAAACGATCTTGCTC
326 GGGAAACGATCTTGCTC
1008321 TTACTTCAATTTCA
1 TTACTTCAATTTCA
1008335 GAGTTAAAGA
Statistics
Matches: 356, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
342 356 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (342 bp):
TTACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
GTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGA
GATAAAGGCTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACT
TCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGTGAAATGATC
TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGAT
GGGAAACGATCTTGCTC
Found at i:1008060 original size:76 final size:76
Alignment explanation
Indices: 1007979--1008393 Score: 690
Period size: 76 Copynumber: 5.5 Consensus size: 76
1007969 GATCTTGCTC
* *
1007979 TTACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
1 TTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
1008044 GTTATCCAACT
66 GTTATCCAACT
* *
1008055 CTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGGCTT
1 TTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
1008120 GTTATCCAACT
66 GTTATCCAACT
*
1008131 CTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
1 TTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
* *
1008196 GATATCCAGCT
66 GTTATCCAACT
1008207 TTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
1 TTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
* *
1008272 GATATCCAGCT
66 GTTATCCAACT
* * *
1008283 TTACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTCTTACTTCAATTTCAGAGTTAAAGACTT
1 TTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
1008348 GTTATCCAACT
66 GTTATCCAACT
* *
1008359 TTACTTCAATTTCAAGCGGA--TGAAAAGATCTTGCT
1 TTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCT
1008394 GTGGTCTGAT
Statistics
Matches: 323, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
74 13 0.04
76 310 0.96
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (76 bp):
TTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTT
GTTATCCAACT
Found at i:1008289 original size:266 final size:265
Alignment explanation
Indices: 1007714--1008296 Score: 949
Period size: 266 Copynumber: 2.2 Consensus size: 265
1007704 TATCCAACTC
* * ** *
1007714 TACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGGCTTG
1 TACTTCAATTTCAAGAGGATG-AAAACGATCCAGCTCTTACTTCAATTTCAGAGATAAAGACTTG
1007779 TTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAG
65 TTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAG
* *
1007844 ATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTT
130 ATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTT
1007909 CAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGGGAAACGATCT
195 CAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGGGAAACGATCT
1007974 TGCTCT
260 TGCTCT
* **
1007980 TACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTG
1 TACTTCAATTTCAAGAGGAT-GAAAACGATCCAGCTCTTACTTCAATTTCAGAGATAAAGACTTG
1008045 TTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAG
65 TTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAG
* *
1008110 ATAAAGGCTTGTTATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTT
130 ATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTT
* *
1008175 CAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGTGAAATGATCT
195 CAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGGGAAACGATCT
1008240 TGCTCT
260 TGCTCT
1008246 TACTTCAATTTC-AGA-GAT-AAAGACTTGATATCCAGCT-TTACTTCAATTTCA
1 TACTTCAATTTCAAGAGGATGAAA-AC--G--ATCCAGCTCTTACTTCAATTTCA
1008297 AGAGGATGGG
Statistics
Matches: 300, Mismatches: 11, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
262 2 0.01
263 2 0.01
264 3 0.01
265 4 0.01
266 282 0.94
267 7 0.02
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (265 bp):
TACTTCAATTTCAAGAGGATGAAAACGATCCAGCTCTTACTTCAATTTCAGAGATAAAGACTTGT
TATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
TAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATGTGAAATGATCTTGCTCTTACTTC
AATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGGGAAACGATCTT
GCTCT
Found at i:1020501 original size:29 final size:28
Alignment explanation
Indices: 1020469--1020798 Score: 104
Period size: 29 Copynumber: 11.3 Consensus size: 28
1020459 GTAGTACGGT
1020469 AATTTTGGTGAAATCGAGGTTTAAAATGG
1 AATTTTGGTGAAATCG-GGTTTAAAATGG
**
1020498 AATTTT-G-GAAAGTTCGGGGATAAAATGG
1 AATTTTGGTGAAA--TCGGGTTTAAAATGG
*
1020526 TAATTTTTGGTGAAATCGGGGTTAAAAATGG
1 -AA-TTTTGGTGAAATC-GGGTTTAAAATGG
* *
1020557 AATTTT-G-GAAAGTTTGGG-GTAAAATGG
1 AATTTTGGTGAAA--TCGGGTTTAAAATGG
* * * *
1020584 TAATTTTCGATGATACCAGGGTTAAAAATGG
1 -AATTTT-GGTGAAATC-GGGTTTAAAATGG
* *** * *
1020615 AATTTTGGAAGGTTTAGGG-GTAAAATGG
1 AATTTTGG-TGAAATCGGGTTTAAAATGG
* *
1020643 TAATTTTCAGTGAAATCGAGGTTAAAAATGG
1 -AATTTT-GGTGAAATCG-GGTTTAAAATGG
** * **
1020674 AATTTTGGAT-AGTTTGGGGGTAAAATGG
1 AATTTTGG-TGAAATCGGGTTTAAAATGG
* * *
1020702 TAATATTCGGTGAAATTAGGGTTAAAAATGG
1 -AAT-TTTGGTGAAA-TCGGGTTTAAAATGG
* * *
1020733 AATTTT--AGAAAGTTTAGGG-GTAAAATGG
1 AATTTTGGTGAAA---TCGGGTTTAAAATGG
* *
1020761 TAATTTTCGGTGAAATTGGGTTAAAAATGG
1 -AATTTT-GGTGAAATCGGGTTTAAAATGG
1020791 AATTTTGG
1 AATTTTGG
1020799 AAGTGTGGGG
Statistics
Matches: 217, Mismatches: 52, Indels: 65
0.65 0.16 0.19
Matches are distributed among these distances:
27 19 0.09
28 46 0.21
29 61 0.28
30 44 0.20
31 39 0.18
32 8 0.04
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.34
Consensus pattern (28 bp):
AATTTTGGTGAAATCGGGTTTAAAATGG
Found at i:1020543 original size:59 final size:58
Alignment explanation
Indices: 1020466--1020824 Score: 467
Period size: 59 Copynumber: 6.2 Consensus size: 58
1020456 AGGGTAGTAC
* *
1020466 GGTAATTTT-GGTGAAATCGAGGTTTAAAATGGAATTTTGGAAAGTTCGGGGATAAAAT
1 GGTAATTTTCGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTAGGGG-TAAAAT
* * *
1020524 GGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGTAAAAT
1 GGTAATTTTCGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTAGGGGTAAAAT
* * * *
1020582 GGTAATTTTCGATGATA-CCAGGGTTAAAAATGGAATTTTGGAAGGTTTAGGGGTAAAAT
1 GGTAATTTTCGGTGAAATCGA-GGTTAAAAATGGAATTTTGGAAAG-TTAGGGGTAAAAT
* * *
1020641 GGTAATTTTCAGTGAAATCGAGGTTAAAAATGGAATTTTGGATAGTTTGGGGGTAAAAT
1 GGTAATTTTCGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAG-TTAGGGGTAAAAT
* * *
1020700 GGTAATATTCGGTGAAAT-TAGGGTTAAAAATGGAATTTTAGAAAGTTTAGGGGTAAAAT
1 GGTAATTTTCGGTGAAATCGA-GGTTAAAAATGGAATTTTGGAAAG-TTAGGGGTAAAAT
* *
1020759 GGTAATTTTCGGTGAAATTG-GGTTAAAAATGGAATTTTGG-AAGTGTGGGGGTAAAAT
1 GGTAATTTTCGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGT-TAGGGGTAAAAT
1020816 GGTAATTTT
1 GGTAATTTT
1020825 TAGAAGTTTC
Statistics
Matches: 267, Mismatches: 27, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
56 1 0.00
57 24 0.09
58 72 0.27
59 168 0.63
60 2 0.01
ACGTcount: A:0.34, C:0.03, G:0.30, T:0.34
Consensus pattern (58 bp):
GGTAATTTTCGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTAGGGGTAAAAT
Found at i:1020621 original size:117 final size:117
Alignment explanation
Indices: 1020486--1020824 Score: 495
Period size: 117 Copynumber: 2.9 Consensus size: 117
1020476 GTGAAATCGA
* * *
1020486 GGTTTAAAATGGAATTTTGGAAAG-TTCGGGGATAAAATGGTAATTTTTGGTGAAATCGGGGTTA
1 GGTTAAAAATGGAATTTTGGAAAGTTTAGGGG-TAAAATGGTAATTTTCGGTGAAATCGGGGTTA
*
1020550 AAAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTCGATGATACCAG
65 AAAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTCGATGAAACCAG
* * *
1020603 GGTTAAAAATGGAATTTTGGAAGGTTTAGGGGTAAAATGGTAATTTTCAGTGAAATCGAGGTTAA
1 GGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAA
* * * **
1020668 AAATGGAATTTTGGATAGTTTGGGGGTAAAATGGTAATATTCGGTGAAATTAG
66 AAATGGAATTTTGGAAAGTTT-GGGGTAAAATGGTAATTTTCGATGAAACCAG
* *
1020721 GGTTAAAAATGGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTCGGTGAAAT-TGGGTTAA
1 GGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAA
*
1020785 AAATGGAATTTTGG-AAGTGTGGGGGTAAAATGGTAATTTT
66 AAATGGAATTTTGGAAAGT-TTGGGGTAAAATGGTAATTTT
1020825 TAGAAGTTTC
Statistics
Matches: 199, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
116 21 0.11
117 93 0.47
118 85 0.43
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.34
Consensus pattern (117 bp):
GGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAA
AAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTCGATGAAACCAG
Done.