Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 45 of 126
Found at i:13449977 original size:32 final size:33
Alignment explanation
Indices: 13449927--13450014 Score: 169
Period size: 32 Copynumber: 2.7 Consensus size: 33
13449917 TTTCTTAAAA
13449927 TTATATTTTCGAAATATTTTTTACATATATTTT
1 TTATATTTTCGAAATATTTTTTACATATATTTT
13449960 TTATATTTT-GAAATATTTTTTACATATATTTT
1 TTATATTTTCGAAATATTTTTTACATATATTTT
13449992 TTATATTTTCGAAATATTTTTTA
1 TTATATTTTCGAAATATTTTTTA
13450015 GCTTTTCGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
32 32 0.59
33 22 0.41
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (33 bp):
TTATATTTTCGAAATATTTTTTACATATATTTT
Found at i:13450020 original size:20 final size:19
Alignment explanation
Indices: 13449985--13450033 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
13449975 TTTTTTACAT
*
13449985 ATATTTTTTATATTTTCGAA
1 ATATTTTTTAGATTTTCG-A
*
13450005 ATATTTTTTAGCTTTTCGA
1 ATATTTTTTAGATTTTCGA
*
13450024 ATTTTTTTTA
1 ATATTTTTTA
13450034 AAATATTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.63
Consensus pattern (19 bp):
ATATTTTTTAGATTTTCGA
Found at i:13450081 original size:35 final size:34
Alignment explanation
Indices: 13450019--13450106 Score: 110
Period size: 35 Copynumber: 2.6 Consensus size: 34
13450009 TTTTTAGCTT
*
13450019 TTCG-AATTTTTTTTA-AAATATTCTTTTATATC
1 TTCGAAATATTTTTTACAAATATTCTTTTATATC
* *
13450051 TTCGAAATAAATTTTTTACATATATT-TTTTATATT
1 TTCGAAAT--ATTTTTTACAAATATTCTTTTATATC
13450086 TTCGAAATATTTTTTACAAAT
1 TTCGAAATATTTTTTACAAAT
13450107 TAGGAATCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
32 4 0.08
33 15 0.31
35 23 0.48
36 6 0.12
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.56
Consensus pattern (34 bp):
TTCGAAATATTTTTTACAAATATTCTTTTATATC
Found at i:13450092 original size:87 final size:85
Alignment explanation
Indices: 13449932--13450101 Score: 263
Period size: 87 Copynumber: 2.0 Consensus size: 85
13449922 TAAAATTATA
* *
13449932 TTTTCGAAATATTTTTTACATATATTTTTTATATTTTGAAATATTTTTTACATATATTTTTTATA
1 TTTTCGAAATATTTTTTACAAATATTTTTTATATTTCGAAATATTTTTTACATATATTTTTTATA
13449997 TTTTCGAAATATTTTTTAGC
66 TTTTCGAAATATTTTTTAGC
*
13450017 TTTTCG-AATTTTTTTTA-AAATATTCTTTTATATCTTCGAAATAAATTTTTTACATATATTTTT
1 TTTTCGAAATATTTTTTACAAATATT-TTTTATAT-TTCGAAAT--ATTTTTTACATATATTTTT
13450080 TATATTTTCGAAATATTTTTTA
62 TATATTTTCGAAATATTTTTTA
13450102 CAAATTAGGA
Statistics
Matches: 78, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
83 6 0.08
84 18 0.23
85 13 0.17
87 41 0.53
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.59
Consensus pattern (85 bp):
TTTTCGAAATATTTTTTACAAATATTTTTTATATTTCGAAATATTTTTTACATATATTTTTTATA
TTTTCGAAATATTTTTTAGC
Found at i:13451214 original size:30 final size:30
Alignment explanation
Indices: 13451175--13451296 Score: 172
Period size: 30 Copynumber: 4.1 Consensus size: 30
13451165 TTTGATTTTT
* * *
13451175 TTTCATTTATTTTTTAAATTTAATTTGTAA
1 TTTCGTTTATATTTTAAATTTAATTTCTAA
* *
13451205 TTTTGTTTATATTTTAAATTTAATTTGTAA
1 TTTCGTTTATATTTTAAATTTAATTTCTAA
13451235 TTTCGTTTATATTTTAAATTTAATTTCTAA
1 TTTCGTTTATATTTTAAATTTAATTTCTAA
* * *
13451265 TTTCATTTTTATTTTAAATTTCATTTCTAA
1 TTTCGTTTATATTTTAAATTTAATTTCTAA
13451295 TT
1 TT
13451297 ATTATTTTTC
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 84 1.00
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (30 bp):
TTTCGTTTATATTTTAAATTTAATTTCTAA
Found at i:13451243 original size:23 final size:23
Alignment explanation
Indices: 13451217--13451261 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
13451207 TTGTTTATAT
*
13451217 TTTA-AATTTAATTTGTAATTTCG
1 TTTATAATTTAAATT-TAATTTCG
*
13451240 TTTATATTTTAAATTTAATTTC
1 TTTATAATTTAAATTTAATTTC
13451262 TAATTTCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.60
Consensus pattern (23 bp):
TTTATAATTTAAATTTAATTTCG
Found at i:13456871 original size:25 final size:25
Alignment explanation
Indices: 13456843--13456896 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
13456833 TCCCGAGGTT
*
13456843 CTTTTGTTTGAGAATCTTGGATTAA
1 CTTTTGTTCGAGAATCTTGGATTAA
13456868 CTTTTGTTCGAGAATCTTGGATTAA
1 CTTTTGTTCGAGAATCTTGGATTAA
13456893 CTTT
1 CTTT
13456897 CAATTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.22, C:0.11, G:0.19, T:0.48
Consensus pattern (25 bp):
CTTTTGTTCGAGAATCTTGGATTAA
Found at i:13457145 original size:21 final size:21
Alignment explanation
Indices: 13457094--13457146 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
13457084 GTAACAGACA
* * * *
13457094 TCTACCAATACTAGTGATAGT
1 TCTACCGATACAAGTGAAACT
**
13457115 TCTATTGATACAAGTGAAACT
1 TCTACCGATACAAGTGAAACT
13457136 TCTACCGATAC
1 TCTACCGATAC
13457147 TAAAAACACT
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (21 bp):
TCTACCGATACAAGTGAAACT
Found at i:13461656 original size:29 final size:28
Alignment explanation
Indices: 13461624--13461686 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
13461614 TTAAATATGA
*
13461624 TAAATGTAAGCCTTTGTGACTGATTTTG
1 TAAATGTAAGCCTCTGTGACTGATTTTG
** * *
13461652 TTAAATGTGCGTCTCTGTGGCTGATTTTG
1 -TAAATGTAAGCCTCTGTGACTGATTTTG
13461681 TAAATG
1 TAAATG
13461687 ACACATTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.22, C:0.11, G:0.24, T:0.43
Consensus pattern (28 bp):
TAAATGTAAGCCTCTGTGACTGATTTTG
Found at i:13461745 original size:26 final size:26
Alignment explanation
Indices: 13461716--13461797 Score: 119
Period size: 26 Copynumber: 3.2 Consensus size: 26
13461706 AATGGAAAAA
*
13461716 CCTTTGTGGCTATCTCTGATTGAATG
1 CCTTTGTGGCTATCTCTGATTGAACG
* * *
13461742 CCTTTATGGCTATCTCTAATTGGACG
1 CCTTTGTGGCTATCTCTGATTGAACG
*
13461768 CCTTTGTGGCTATCTCTGATTGGACG
1 CCTTTGTGGCTATCTCTGATTGAACG
13461794 CCTT
1 CCTT
13461798 CGTTACTACC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.15, C:0.23, G:0.22, T:0.40
Consensus pattern (26 bp):
CCTTTGTGGCTATCTCTGATTGAACG
Found at i:13462286 original size:11 final size:11
Alignment explanation
Indices: 13462270--13462294 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13462260 ATTATTTGTT
13462270 GTGTTTTCGTA
1 GTGTTTTCGTA
13462281 GTGTTTTCGTA
1 GTGTTTTCGTA
13462292 GTG
1 GTG
13462295 CGTATAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.32, T:0.52
Consensus pattern (11 bp):
GTGTTTTCGTA
Found at i:13463527 original size:53 final size:53
Alignment explanation
Indices: 13463462--13463567 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
13463452 ATGTTAAAAG
*
13463462 AAAGAGAAAGTTTTAATTTAACCTTAACTTTTAATTTATTTCAATTTAATGTT
1 AAAGAGAAAGTTTTAATTTAACCTCAACTTTTAATTTATTTCAATTTAATGTT
*
13463515 AAAGAGAAAGTTTTAATTTAATCTCAACTTTTAATTTATTTCAATTTAATGTT
1 AAAGAGAAAGTTTTAATTTAACCTCAACTTTTAATTTATTTCAATTTAATGTT
13463568 TTAAAATTTG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.47
Consensus pattern (53 bp):
AAAGAGAAAGTTTTAATTTAACCTCAACTTTTAATTTATTTCAATTTAATGTT
Found at i:13463785 original size:19 final size:20
Alignment explanation
Indices: 13463748--13463798 Score: 95
Period size: 19 Copynumber: 2.6 Consensus size: 20
13463738 TCGAATCGAA
13463748 TCGAATCGAGTCAAAAAATT
1 TCGAATCGAGTCAAAAAATT
13463768 TCGAATCGAGTC-AAAAATT
1 TCGAATCGAGTCAAAAAATT
13463787 TCGAATCGAGTC
1 TCGAATCGAGTC
13463799 GAGTCTTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 19 0.61
20 12 0.39
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (20 bp):
TCGAATCGAGTCAAAAAATT
Found at i:13465147 original size:23 final size:23
Alignment explanation
Indices: 13465104--13465147 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
13465094 ATCAAATAAT
*
13465104 TATTTAAAAAATAGATTTAAATA
1 TATTTAAAAAATAGATGTAAATA
*
13465127 TATTTATAAAAA-ATATGTAAA
1 TATTTA-AAAAATAGATGTAAA
13465148 AAGAAACTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 13 0.72
24 5 0.28
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (23 bp):
TATTTAAAAAATAGATGTAAATA
Found at i:13468795 original size:23 final size:21
Alignment explanation
Indices: 13468754--13468795 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
13468744 TTTGAGAAAG
*
13468754 AAATGGAATAATGACATGAGT
1 AAATGGAATAATGAAATGAGT
13468775 AAATGGAATGAAATGAAATGA
1 AAATGGAAT--AATGAAATGA
13468796 AAATTAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
23 9 0.50
ACGTcount: A:0.52, C:0.02, G:0.24, T:0.21
Consensus pattern (21 bp):
AAATGGAATAATGAAATGAGT
Found at i:13468799 original size:21 final size:20
Alignment explanation
Indices: 13468752--13468799 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
13468742 GATTTGAGAA
*
13468752 AGAAATGGAATAATGACATG
1 AGAAATGGAATAATGAAATG
13468772 AGTAAATGGAATGAAATGAAATG
1 AG-AAATGGAAT--AATGAAATG
13468795 A-AAAT
1 AGAAAT
13468800 TAATGTATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.08
21 13 0.54
23 9 0.38
ACGTcount: A:0.54, C:0.02, G:0.23, T:0.21
Consensus pattern (20 bp):
AGAAATGGAATAATGAAATG
Found at i:13476069 original size:19 final size:19
Alignment explanation
Indices: 13476033--13476089 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 19
13476023 AAAAGAGCAA
*
13476033 GGACAGAGACAG-GGAAAG
1 GGACAGGGACAGAGGAAAG
*
13476051 GGAGAGGGACAGAGGAAAG
1 GGACAGGGACAGAGGAAAG
* * *
13476070 AGACAGGGAGAGAGCAAAG
1 GGACAGGGACAGAGGAAAG
13476089 G
1 G
13476090 CCCGGATCGT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 10 0.32
19 21 0.68
ACGTcount: A:0.44, C:0.09, G:0.47, T:0.00
Consensus pattern (19 bp):
GGACAGGGACAGAGGAAAG
Found at i:13478272 original size:13 final size:13
Alignment explanation
Indices: 13478256--13478282 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13478246 ATGTTAAACA
13478256 CTATTTTTAATTT
1 CTATTTTTAATTT
13478269 CTATTTTTAATTT
1 CTATTTTTAATTT
13478282 C
1 C
13478283 ACACTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (13 bp):
CTATTTTTAATTT
Found at i:13478663 original size:80 final size:80
Alignment explanation
Indices: 13478530--13478688 Score: 309
Period size: 80 Copynumber: 2.0 Consensus size: 80
13478520 GTCCGGATCT
13478530 TCATCAGATAAGGATGATATCACTTCATGTTCTTGGAGTGAAACACCTGGCAAATGCTTTTCCTT
1 TCATCAGATAAGGATGATATCACTTCATGTTCTTGGAGTGAAACACCTGGCAAATGCTTTTCCTT
13478595 GTTGATAAGCATTAG
66 GTTGATAAGCATTAG
*
13478610 TCATCAGATAAGGATGCTATCACTTCATGTTCTTGGAGTGAAACACCTGGCAAATGCTTTTCCTT
1 TCATCAGATAAGGATGATATCACTTCATGTTCTTGGAGTGAAACACCTGGCAAATGCTTTTCCTT
13478675 GTTGATAAGCATTA
66 GTTGATAAGCATTA
13478689 ATTCTTCCGG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34
Consensus pattern (80 bp):
TCATCAGATAAGGATGATATCACTTCATGTTCTTGGAGTGAAACACCTGGCAAATGCTTTTCCTT
GTTGATAAGCATTAG
Found at i:13486012 original size:80 final size:80
Alignment explanation
Indices: 13485879--13486037 Score: 309
Period size: 80 Copynumber: 2.0 Consensus size: 80
13485869 CCGGAAGAAT
13485879 TAATGCTTATCAACAAGGAAAAGCATTTGCCAGGTGTTTCACTCCAAGAACATGAAGTGATAGCA
1 TAATGCTTATCAACAAGGAAAAGCATTTGCCAGGTGTTTCACTCCAAGAACATGAAGTGATAGCA
13485944 TCCTTATCTGATGAC
66 TCCTTATCTGATGAC
*
13485959 TAATGCTTATCAACAAGGAAAAGCATTTGCCAGGTGTTTCACTCCAAGAACATGAAGTGATATCA
1 TAATGCTTATCAACAAGGAAAAGCATTTGCCAGGTGTTTCACTCCAAGAACATGAAGTGATAGCA
13486024 TCCTTATCTGATGA
66 TCCTTATCTGATGA
13486038 AGATCCGGAC
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28
Consensus pattern (80 bp):
TAATGCTTATCAACAAGGAAAAGCATTTGCCAGGTGTTTCACTCCAAGAACATGAAGTGATAGCA
TCCTTATCTGATGAC
Found at i:13486729 original size:19 final size:20
Alignment explanation
Indices: 13486692--13486729 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
13486682 CAAAAACCCT
* *
13486692 CAAAACTTTTTATTTTCTCC
1 CAAAACTTTTTACTCTCTCC
13486712 CAAAAC-TTTTACTCTCTC
1 CAAAACTTTTTACTCTCTC
13486730 TCACTTTCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (20 bp):
CAAAACTTTTTACTCTCTCC
Found at i:13486866 original size:18 final size:19
Alignment explanation
Indices: 13486832--13486870 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
13486822 TTCTCCAAAA
13486832 CTCCCAAAACTTTTTATTT
1 CTCCCAAAACTTTTTATTT
*
13486851 CTCCCTAAAC-TTTTATTT
1 CTCCCAAAACTTTTTATTT
13486869 CT
1 CT
13486871 TACCTTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (19 bp):
CTCCCAAAACTTTTTATTT
Found at i:13488231 original size:16 final size:15
Alignment explanation
Indices: 13488201--13488242 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
13488191 GAAGGTTGAA
13488201 AATAAATAAAT-AAAT
1 AATAAA-AAATAAAAT
*
13488216 TATAAAATAATAAAAT
1 AATAAAA-AATAAAAT
13488232 AATAAAAAATA
1 AATAAAAAATA
13488243 TATAGTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 1 0.04
15 12 0.52
16 10 0.43
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AATAAAAAATAAAAT
Found at i:13488607 original size:24 final size:25
Alignment explanation
Indices: 13488580--13488636 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
13488570 GATGTTGATG
13488580 ATATTTTAAATTA-ATATATTAATA
1 ATATTTTAAATTAGATATATTAATA
* * *
13488604 ATA-TATAAATTAGATATTTTGATA
1 ATATTTTAAATTAGATATATTAATA
13488628 ATATTTTAA
1 ATATTTTAA
13488637 TAATAAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 8 0.30
24 15 0.56
25 4 0.15
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (25 bp):
ATATTTTAAATTAGATATATTAATA
Found at i:13496722 original size:39 final size:38
Alignment explanation
Indices: 13496679--13496753 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 38
13496669 ATAAAAATTT
*
13496679 ATTAA-AATTAAGTGATTAAAATAAGAATATATAATAAAA
1 ATTAACAA-TAAGTGATTAAAATAAGAA-AGATAATAAAA
*
13496718 ATTAACAATGAGTGATTAAAATAAGAAAGATAATAA
1 ATTAACAATAAGTGATTAAAATAAGAAAGATAATAA
13496754 TAATAACTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 8 0.24
39 23 0.70
40 2 0.06
ACGTcount: A:0.60, C:0.01, G:0.11, T:0.28
Consensus pattern (38 bp):
ATTAACAATAAGTGATTAAAATAAGAAAGATAATAAAA
Found at i:13509747 original size:2 final size:2
Alignment explanation
Indices: 13509742--13509770 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
13509732 TTTCAAGCGT
13509742 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13509771 TAAAATTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13518232 original size:33 final size:33
Alignment explanation
Indices: 13518195--13518294 Score: 96
Period size: 33 Copynumber: 3.0 Consensus size: 33
13518185 AGTCAAACAA
*
13518195 AATGATGAAGCTGCCCCTAGAGATGTTCCAATC
1 AATGATGAAGCTGCCCCTACAGATGTTCCAATC
* * * *
13518228 AATGATGAAGCT-CCCGCGATAAATGTTCCAACC
1 AATGATGAAGCTGCCC-CTACAGATGTTCCAATC
* * *
13518261 ATTGATGAAGTTG-CCTTGACAGATGTTCCAATC
1 AATGATGAAGCTGCCCCT-ACAGATGTTCCAATC
13518294 A
1 A
13518295 CTTATGTTGA
Statistics
Matches: 53, Mismatches: 11, Indels: 6
0.76 0.16 0.09
Matches are distributed among these distances:
32 3 0.06
33 50 0.94
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (33 bp):
AATGATGAAGCTGCCCCTACAGATGTTCCAATC
Found at i:13530816 original size:22 final size:22
Alignment explanation
Indices: 13530791--13530914 Score: 76
Period size: 23 Copynumber: 5.4 Consensus size: 22
13530781 CAAATCAACG
*
13530791 AATAAATAAAGACAAAAATATA
1 AATAAATAAAAACAAAAATATA
* *
13530813 AATACCATAAAAATAAAAA-ATA
1 AATA-AATAAAAACAAAAATATA
13530835 AATAAAATACATAAAACAATAAATA-A
1 AAT-AAAT--A-AAAACAA-AAATATA
* *
13530861 AATTAAATAAAAACAAGAATGTA
1 AA-TAAATAAAAACAAAAATATA
* *
13530884 AATAAA-AAATGAATAACAA-ATA
1 AATAAATAAA--AACAAAAATATA
13530906 AATAAATAA
1 AATAAATAA
13530915 TAAATATATG
Statistics
Matches: 80, Mismatches: 10, Indels: 23
0.71 0.09 0.20
Matches are distributed among these distances:
21 3 0.04
22 27 0.34
23 30 0.38
24 2 0.03
25 6 0.08
26 10 0.12
27 2 0.03
ACGTcount: A:0.72, C:0.06, G:0.03, T:0.19
Consensus pattern (22 bp):
AATAAATAAAAACAAAAATATA
Found at i:13530837 original size:11 final size:11
Alignment explanation
Indices: 13530823--13530920 Score: 67
Period size: 11 Copynumber: 8.5 Consensus size: 11
13530813 AATACCATAA
13530823 AAATAAAAAAT
1 AAATAAAAAAT
13530834 AAAT--AAAAT
1 AAATAAAAAAT
*
13530843 ACATAAAACAAT
1 AAATAAAA-AAT
13530855 AAATAAAATTAAAT
1 AAAT-AAA--AAAT
13530869 AAA-AACAAGAATGT
1 AAATAA-AA-AA--T
13530883 AAATAAAAAAT
1 AAATAAAAAAT
* *
13530894 GAATAACAAAT
1 AAATAAAAAAT
*
13530905 AAATAAATAAT
1 AAATAAAAAAT
13530916 AAATA
1 AAATA
13530921 TATGAACTGC
Statistics
Matches: 69, Mismatches: 7, Indels: 22
0.70 0.07 0.22
Matches are distributed among these distances:
9 8 0.12
11 30 0.43
12 10 0.14
13 6 0.09
14 12 0.17
15 3 0.04
ACGTcount: A:0.72, C:0.04, G:0.03, T:0.20
Consensus pattern (11 bp):
AAATAAAAAAT
Found at i:13530857 original size:21 final size:21
Alignment explanation
Indices: 13530823--13530920 Score: 80
Period size: 22 Copynumber: 4.8 Consensus size: 21
13530813 AATACCATAA
13530823 AAATAAAAAATAAATAAAA-T
1 AAATAAAAAATAAATAAAATT
*
13530843 ACATAAAACAATAAATAAAATT
1 AAATAAAA-AATAAATAAAATT
* *
13530865 AAAT--AAAA-ACA-AGAATGT
1 AAATAAAAAATAAATAAAAT-T
* *
13530883 AAATAAAAAATGAATAACAAAT
1 AAATAAAAAATAAATAA-AATT
*
13530905 AAATAAATAATAAATA
1 AAATAAAAAATAAATA
13530921 TATGAACTGC
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
17 4 0.07
18 7 0.12
19 2 0.03
20 13 0.22
21 12 0.20
22 20 0.33
23 2 0.03
ACGTcount: A:0.72, C:0.04, G:0.03, T:0.20
Consensus pattern (21 bp):
AAATAAAAAATAAATAAAATT
Found at i:13530863 original size:26 final size:28
Alignment explanation
Indices: 13530805--13530869 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 28
13530795 AATAAAGACA
*
13530805 AAAATATAAATACCATAAAAATAAAAAAT
1 AAAATA-AAATACCATAAAAACAAAAAAT
*
13530834 -AAATAAAATA-CAT-AAAACAATAAAT
1 AAAATAAAATACCATAAAAACAAAAAAT
*
13530859 AAAATTAAATA
1 AAAATAAAATA
13530870 AAAACAAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
25 10 0.31
26 12 0.38
27 5 0.16
28 5 0.16
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (28 bp):
AAAATAAAATACCATAAAAACAAAAAAT
Found at i:13530920 original size:22 final size:22
Alignment explanation
Indices: 13530791--13530920 Score: 72
Period size: 22 Copynumber: 5.7 Consensus size: 22
13530781 CAAATCAACG
* *
13530791 AATAAATAA-AGACAAAAATATA
1 AATAAATAATAAATAAAAA-ATA
*
13530813 AATACCATAA-AAATAAAAAATA
1 AATA-AATAATAAATAAAAAATA
*
13530835 AAT-AA-AATACATAAAACAATA
1 AATAAATAATAAATAAAA-AATA
13530856 AATAAAATTAAATAAA-AACAAGAATGTA
1 AAT-AAA-T-AATAAATAA-AA-AA--TA
* * *
13530884 AATAAAAAATGAATAACAAATA
1 AATAAATAATAAATAAAAAATA
13530906 AATAAATAATAAATA
1 AATAAATAATAAATA
13530921 TATGAACTGC
Statistics
Matches: 84, Mismatches: 12, Indels: 24
0.70 0.10 0.20
Matches are distributed among these distances:
19 2 0.02
20 8 0.10
21 7 0.08
22 25 0.30
23 13 0.15
24 2 0.02
25 8 0.10
26 11 0.13
27 3 0.04
28 5 0.06
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.20
Consensus pattern (22 bp):
AATAAATAATAAATAAAAAATA
Found at i:13531037 original size:3 final size:3
Alignment explanation
Indices: 13531029--13531087 Score: 109
Period size: 3 Copynumber: 19.3 Consensus size: 3
13531019 TAAACAAGTA
13531029 AAT AAT AAT AAT AAT AAT AAAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
13531075 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
13531088 CGAACTCCAA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 52 0.95
4 3 0.05
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:13532704 original size:59 final size:59
Alignment explanation
Indices: 13532554--13532925 Score: 511
Period size: 59 Copynumber: 6.4 Consensus size: 59
13532544 TGGATACCCG
* * * *
13532554 GGGGCAAAATGGTGATTTT-GGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATAC-
1 GGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTCA
* * * *
13532611 GGGGGAAAATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTGGAA-AGTTTA
1 GGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGA-TTCA
* * *
13532670 AGGGTAAAATGGTAATTTTCGGTGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCA
1 GGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTCA
* * * *
13532729 GGGGTAAAATGGTAATTTTTGTTGAAATCGAGGTTAAAAATGGAATTTTAGAAGATTTA
1 GGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTCA
* *
13532788 GGGGTAAAATGGTAATTTTTGGTGAAATC-GGGCTAAAAATGGAATTTTAGAAGATTC-
1 GGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTCA
* * *
13532845 GAGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTAGAAGATTCG
1 G-GGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTCA
13532905 GGGGTAAAATGGTAATTTTCG
1 GGGGTAAAATGGTAATTTTCG
13532926 AAAGTTTCGG
Statistics
Matches: 280, Mismatches: 28, Indels: 12
0.88 0.09 0.04
Matches are distributed among these distances:
57 19 0.07
58 83 0.30
59 176 0.63
60 2 0.01
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (59 bp):
GGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTCA
Found at i:13532723 original size:117 final size:116
Alignment explanation
Indices: 13532554--13532925 Score: 541
Period size: 117 Copynumber: 3.2 Consensus size: 116
13532544 TGGATACCCG
* * * *
13532554 GGGGCAAAATGGTGATTTT-GGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATACGGGGGAA
1 GGGGTAAAATGGTAATTTTCGGTGAAATC-GGGTTAAAAATGGAATTTTAAAAGATTCGGGGTAA
* *
13532618 AATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTGGAA-AGTTTA
65 AATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGA-TTTA
*
13532670 AGGGTAAAATGGTAATTTTCGGTGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCAGGGGTA
1 GGGGTAAAATGGTAATTTTCGGTGAAATC-GGGTTAAAAATGGAATTTTAAAAGATTC-GGGGTA
* *
13532735 AAATGGTAATTTTTGTTGAAATCGAGGTTAAAAATGGAATTTTAGAAGATTTA
64 AAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTTA
* * *
13532788 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGCTAAAAATGGAATTTTAGAAGATTCGAGGGTAA
1 GGGGTAAAATGGTAATTTTCGGTGAAATCGGGTTAAAAATGGAATTTTAAAAGATTCG-GGGTAA
* * **
13532853 AATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTAGAAGATTCG
65 AATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTTA
13532905 GGGGTAAAATGGTAATTTTCG
1 GGGGTAAAATGGTAATTTTCG
13532926 AAAGTTTCGG
Statistics
Matches: 232, Mismatches: 20, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
116 17 0.07
117 135 0.58
118 79 0.34
119 1 0.00
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (116 bp):
GGGGTAAAATGGTAATTTTCGGTGAAATCGGGTTAAAAATGGAATTTTAAAAGATTCGGGGTAAA
ATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTTA
Found at i:13532827 original size:176 final size:176
Alignment explanation
Indices: 13532554--13532923 Score: 532
Period size: 176 Copynumber: 2.1 Consensus size: 176
13532544 TGGATACCCG
* * *
13532554 GGGGCAAAATGGTGA-TTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATACGGGGGAA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTAAAAGATACGGGGGAA
* * *
13532618 AATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTGGAA-AGTTTAAGGGTAAAATGG
66 AATGGTAATTTTCGATGAAATCGGGGCTAAAAATGGAATTTTAGAAGA-TTCAAGGGTAAAATGG
13532682 TAATTTTCGGTGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCA
130 TAATTTTCGGTGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCA
* * *
13532729 GGGGTAAAATGGTAATTTTTGTTGAAATCGAGGTTAAAAATGGAATTTTAGAAGATTTA-GGGGT
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTAAAAGA--TACGGGGG
* * *
13532793 AAAATGGTAATTTTTGGTGAAATC-GGGCTAAAAATGGAATTTTAGAAGATTCGAGGGTAAAATG
64 AAAATGGTAATTTTCGATGAAATCGGGGCTAAAAATGGAATTTTAGAAGATTCAAGGGTAAAATG
* ** * *
13532857 GTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTAGAAGATTCG
129 GTAATTTTCGGTGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCA
13532905 GGGGTAAAATGGTAATTTT
1 GGGGTAAAATGGTAATTTT
13532924 CGAAAGTTTC
Statistics
Matches: 174, Mismatches: 17, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
175 13 0.07
176 132 0.76
177 27 0.16
178 2 0.01
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (176 bp):
GGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTAAAAGATACGGGGGAA
AATGGTAATTTTCGATGAAATCGGGGCTAAAAATGGAATTTTAGAAGATTCAAGGGTAAAATGGT
AATTTTCGGTGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCA
Found at i:13533349 original size:162 final size:160
Alignment explanation
Indices: 13533082--13533554 Score: 793
Period size: 162 Copynumber: 2.9 Consensus size: 160
13533072 TGTAAATCTT
* *
13533082 AAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTGAGGATTAAATTAAAATAAATT
1 AAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTGGGGATTAAATTAAAACAAATT
* *
13533147 AAAAAATAAAAGGACTAAATGCATAAATAATCCAAAAAATGACACGTGGCAATCCCTGATACAGT
66 -AAAAATAAAAGGACTAAATGCATAAATAATCCAAAAAATGACACGTGGC-AGCCCTGGTACAGT
13533212 CAAACAGTCAAAGGACTAATTTATAAACCATG
129 CAAACAGTCAAAGGACTAATTTATAAACCATG
*
13533244 AAAAATTCTTGGGCCAATTTCGTAATTAAATAGAAGTTGATTTGGGGATTAAATTAAAACAAATT
1 AAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTGGGGATTAAATTAAAACAAATT
*
13533309 AAAAATAAAATGGACTAAACGCATAAATAATCCAAAAAATGACACGTGGCAGCCCTTGGTACAGT
66 AAAAATAAAA-GGACTAAATGCATAAATAATCCAAAAAATGACACGTGGCAGCCC-TGGTACAGT
13533374 CAAACAGTCAAAGGACTAATTTATAAACCATG
129 CAAACAGTCAAAGGACTAATTTATAAACCATG
*
13533406 AAAAATTCTTGGGCCAATTTTGTAATTAAATAAAAGTTGATTTGGGGATTAAATTAAAACAAATT
1 AAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTGGGGATTAAATTAAAACAAATT
** *
13533471 AAAAATGTCAAGGACTAAATGCATAAATAATCCAAAAAATGACACGTGACAGCCTCTGGTACAGT
66 AAAAAT-AAAAGGACTAAATGCATAAATAATCCAAAAAATGACACGTGGCAGCC-CTGGTACAGT
*
13533536 CAAACAGTCAGAGGACTAA
129 CAAACAGTCAAAGGACTAA
13533555 ATTGAAAAGC
Statistics
Matches: 294, Mismatches: 13, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
161 14 0.05
162 277 0.94
163 3 0.01
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.26
Consensus pattern (160 bp):
AAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTGGGGATTAAATTAAAACAAATT
AAAAATAAAAGGACTAAATGCATAAATAATCCAAAAAATGACACGTGGCAGCCCTGGTACAGTCA
AACAGTCAAAGGACTAATTTATAAACCATG
Found at i:13537625 original size:59 final size:59
Alignment explanation
Indices: 13537514--13537625 Score: 170
Period size: 59 Copynumber: 1.9 Consensus size: 59
13537504 AAAATACGTG
**
13537514 TTGAATTAGTAGAATACAAATAATACTTATCGGATAGAAAAACTAATCCCCTAATAGTA
1 TTGAATTAGTAGAATACAAATAATACTTATCGGATAGAAAAACTAAAACCCTAATAGTA
* ** *
13537573 TTGAATTAGTAGAATAGAAATAATACTTATTTGATAGAAAAATTAAAACCCTA
1 TTGAATTAGTAGAATACAAATAATACTTATCGGATAGAAAAACTAAAACCCTA
13537626 GTTCTACTGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 47 1.00
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (59 bp):
TTGAATTAGTAGAATACAAATAATACTTATCGGATAGAAAAACTAAAACCCTAATAGTA
Found at i:13541290 original size:23 final size:24
Alignment explanation
Indices: 13541243--13541291 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
13541233 ATGTTCACAA
*
13541243 ATAAGCTCATTTATTGGCTTGTTT
1 ATAAGCTCATTTATTGACTTGTTT
*
13541267 ATAAGCTCGTTTA-TGACTTGTTT
1 ATAAGCTCATTTATTGACTTGTTT
13541290 AT
1 AT
13541292 TTATTAATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.22, C:0.12, G:0.16, T:0.49
Consensus pattern (24 bp):
ATAAGCTCATTTATTGACTTGTTT
Found at i:13541585 original size:29 final size:29
Alignment explanation
Indices: 13541543--13541601 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
13541533 CAAGTTCAGT
13541543 TCATTTACAACCCCATCCATGATTTGGGA
1 TCATTTACAACCCCATCCATGATTTGGGA
13541572 TCATTTACAACCCCATCCATGATTTGGGA
1 TCATTTACAACCCCATCCATGATTTGGGA
13541601 T
1 T
13541602 ATAGGTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (29 bp):
TCATTTACAACCCCATCCATGATTTGGGA
Found at i:13542602 original size:124 final size:130
Alignment explanation
Indices: 13542327--13542797 Score: 356
Period size: 130 Copynumber: 3.7 Consensus size: 130
13542317 TTAAAATAGG
* * * * *
13542327 TAATGAC-CTTTTAAGGTTGTTGCTAATATTTTAACGTTTAACAATAACTT-ATTTTGTTGTTAC
1 TAATGACTATTTTAAGGTTGTTGCTAATATTGTAACATTT-A-AACAACTTGA-TTTGTCGTTAC
* * * * * ** * * * * *
13542390 AAATTTTATT-AGTAGTTCACAACAACAAATCGTGTCATTGCTATTAATAAGTAGAAA-ATTAAA
63 AAATTTTATTAAGAAGTT-GCAACGACAAATCATATTGTTGCAATGAACAAGCATAAACA-TAAA
**
13542453 TTATG
126 TTAAA
* * ** **
13542458 T-ATCAATATTTTAATATTGTTGCTAATATTGTAATGTTT-AACAACTTGATTT-TCGTTACAAA
1 TAATGACTATTTTAAGGTTGTTGCTAATATTGTAACATTTAAACAACTTGATTTGTCGTTACAAA
**
13542520 TTTTATTAAG-AGTT-C-ACGACAAATTGTATTGTTGCAATGAACAAGCATAAACATAAATTAAA
66 TTTTATTAAGAAGTTGCAACGACAAATCATATTGTTGCAATGAACAAGCATAAACATAAATTAAA
* * * *
13542582 TAAT-ACTATTTTAAGGTTGTTGCTAATATTTTAACATTTACAACTACTTGTTTTGTCGTTATAA
1 TAATGACTATTTTAAGGTTGTTGCTAATATTGTAACATTTA-AACAACTTGATTTGTCGTTACAA
* * * * * *
13542646 ATTTTATTAAGAATTTGCAATGACAAATCATGTTGTTGCAATGAATAAGCATAAACTTAAATTAC
65 ATTTTATTAAGAAGTTGCAACGACAAATCATATTGTTGCAATGAACAAGCATAAACATAAATTAA
*
13542711 G
130 A
* * * * *
13542712 TAATGAC-ATTTTAAGGTTGTTGTTAATGTTTTAACATTTAGCAACAGCTTG-TTTGGTCCTTAC
1 TAATGACTATTTTAAGGTTGTTGCTAATATTGTAACATTTA--AACAACTTGATTT-GTCGTTAC
** *
13542775 GCATTTTATTAAGAATTTGCAAC
63 AAATTTTATTAAGAAGTTGCAAC
13542798 TCCATGTGTT
Statistics
Matches: 278, Mismatches: 48, Indels: 28
0.79 0.14 0.08
Matches are distributed among these distances:
124 63 0.23
125 4 0.01
126 11 0.04
127 39 0.14
128 15 0.05
129 2 0.01
130 80 0.29
131 64 0.23
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (130 bp):
TAATGACTATTTTAAGGTTGTTGCTAATATTGTAACATTTAAACAACTTGATTTGTCGTTACAAA
TTTTATTAAGAAGTTGCAACGACAAATCATATTGTTGCAATGAACAAGCATAAACATAAATTAAA
Found at i:13542707 original size:130 final size:131
Alignment explanation
Indices: 13542205--13542797 Score: 444
Period size: 131 Copynumber: 4.6 Consensus size: 131
13542195 AAATCAACGA
* ** * * *** * * **
13542205 TATTTTAAGGTTGTTGTTAATATTTTAATGTTTAAAAACGACACATTTTTTCATTACAAACCTTA
1 TATTTTAAGGTTGTTGCTAATATTTTAACATTT-ACAACTACTTGTTTTGTCGTTACAAATTTTA
* ** * * * * * * * *
13542270 TTAAGAA-TT-C-ATGACAAATCGTGTTGTTATAATTAGTAAGTAAAAAATTAAAATAGGTAATG
65 TTAAGAATTTGCAACGACAAATCGTGTTGTTGCAATGAATAAGCATAAACTTAAATTAAGTAATC
13542332 AC
130 AC
* * * *
13542334 -CTTTTAAGGTTGTTGCTAATATTTTAACGTTTAACAA-TAACTTATTTTGTTGTTACAAATTTT
1 TATTTTAAGGTTGTTGCTAATATTTTAACATTT-ACAACT-ACTTGTTTTGTCGTTACAAATTTT
* ** * ** * * * * * *
13542397 ATT-AGTAGTTCACAACAACAAATCGTGTCATTGCTATTAATAAGTAGAAAATTAAATTATGT-A
64 ATTAAG-AATTTGCAACGACAAATCGTGTTGTTGCAATGAATAAGCATAAACTTAAATTAAGTAA
*
13542460 TCAA
128 TCAC
** * ** * *
13542464 TATTTTAATATTGTTGCTAATATTGTAATGTTT--AACAACTTGATTT-TCGTTACAAATTTTAT
1 TATTTTAAGGTTGTTGCTAATATTTTAACATTTACAACTACTTGTTTTGTCGTTACAAATTTTAT
* * * * * *
13542526 TAAG-AGTT-C-ACGACAAATTGTATTGTTGCAATGAACAAGCATAAACATAAATTAAATAAT-A
66 TAAGAATTTGCAACGACAAATCGTGTTGTTGCAATGAATAAGCATAAACTTAAATTAAGTAATCA
13542587 C
131 C
*
13542588 TATTTTAAGGTTGTTGCTAATATTTTAACATTTACAACTACTTGTTTTGTCGTTATAAATTTTAT
1 TATTTTAAGGTTGTTGCTAATATTTTAACATTTACAACTACTTGTTTTGTCGTTACAAATTTTAT
* * * *
13542653 TAAGAATTTGCAATGACAAATCATGTTGTTGCAATGAATAAGCATAAACTTAAATTACGTAATGA
66 TAAGAATTTGCAACGACAAATCGTGTTGTTGCAATGAATAAGCATAAACTTAAATTAAGTAATCA
13542718 C
131 C
* * * * **
13542719 -ATTTTAAGGTTGTTGTTAATGTTTTAACATTTAGCAAC-AGCTTGTTTGGTCCTTACGCATTTT
1 TATTTTAAGGTTGTTGCTAATATTTTAACATTTA-CAACTA-CTTGTTTTGTCGTTACAAATTTT
13542782 ATTAAGAATTTGCAAC
64 ATTAAGAATTTGCAAC
13542798 TCCATGTGTT
Statistics
Matches: 367, Mismatches: 79, Indels: 34
0.76 0.16 0.07
Matches are distributed among these distances:
124 63 0.17
125 3 0.01
126 12 0.03
127 37 0.10
128 68 0.19
129 2 0.01
130 79 0.22
131 103 0.28
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (131 bp):
TATTTTAAGGTTGTTGCTAATATTTTAACATTTACAACTACTTGTTTTGTCGTTACAAATTTTAT
TAAGAATTTGCAACGACAAATCGTGTTGTTGCAATGAATAAGCATAAACTTAAATTAAGTAATCA
C
Found at i:13549732 original size:29 final size:29
Alignment explanation
Indices: 13549689--13549781 Score: 152
Period size: 29 Copynumber: 3.2 Consensus size: 29
13549679 AGGTCTCGGA
*
13549689 GAAT-AAATTTAATCTTTGATCCTTTAAT
1 GAATAAAAATTAATCTTTGATCCTTTAAT
13549717 GAATAAAAATTAATCTTTGATCCTTTAAT
1 GAATAAAAATTAATCTTTGATCCTTTAAT
*
13549746 GAATAAAAATTAATCTTTGATCCTTGAAT
1 GAATAAAAATTAATCTTTGATCCTTTAAT
*
13549775 GATTAAA
1 GAATAAA
13549782 TTTAATCATG
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
28 4 0.07
29 57 0.93
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41
Consensus pattern (29 bp):
GAATAAAAATTAATCTTTGATCCTTTAAT
Found at i:13551476 original size:31 final size:30
Alignment explanation
Indices: 13551427--13551489 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
13551417 ATAAGTAAAC
*
13551427 ATATGAATTATAATTTA-TTAAATCAAAATG
1 ATATGAATTAAAATTTATTTAAAT-AAAATG
* *
13551457 ATATTAATTAAAATATTATTTCAATAAAATG
1 ATATGAATTAAAAT-TTATTTAAATAAAATG
13551488 AT
1 AT
13551490 TAAAATTCAC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 12 0.43
31 11 0.39
32 5 0.18
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (30 bp):
ATATGAATTAAAATTTATTTAAATAAAATG
Found at i:13551670 original size:32 final size:32
Alignment explanation
Indices: 13551629--13551702 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 32
13551619 TCATAAATTT
* * *
13551629 ATAAATTAATTACTTAAATTTAGTAACTCATG
1 ATAAATTAATTAATTAAACTTAATAACTCATG
* *
13551661 ATAAGTTAATTAATTGAACTTAATAACTCAT-
1 ATAAATTAATTAATTAAACTTAATAACTCATG
13551692 -T-AATTAATTAA
1 ATAAATTAATTAA
13551703 ATTTTTCAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 9 0.25
30 1 0.03
32 26 0.72
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (32 bp):
ATAAATTAATTAATTAAACTTAATAACTCATG
Found at i:13553821 original size:3 final size:3
Alignment explanation
Indices: 13553809--13553847 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
13553799 TTCGATTAAA
*
13553809 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
13553848 CATTTCTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:13564434 original size:45 final size:45
Alignment explanation
Indices: 13564370--13564467 Score: 146
Period size: 45 Copynumber: 2.2 Consensus size: 45
13564360 GTATTAGAAC
*
13564370 TAGTTCGATTTCTGTAATCAACCTGTTTAGATAT-GACAACATCAA
1 TAGTTCGATTTCTGTAATCAACCTGCTTAGATATAG-CAACATCAA
* *
13564415 TAGTTCGATTTCTGTAATCAACTTGCTTAGATATAGCAGCATCAA
1 TAGTTCGATTTCTGTAATCAACCTGCTTAGATATAGCAACATCAA
13564460 T-GTTCGAT
1 TAGTTCGAT
13564468 ATTTTGCTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
44 7 0.14
45 41 0.84
46 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (45 bp):
TAGTTCGATTTCTGTAATCAACCTGCTTAGATATAGCAACATCAA
Found at i:13586804 original size:38 final size:38
Alignment explanation
Indices: 13586762--13587654 Score: 596
Period size: 38 Copynumber: 23.3 Consensus size: 38
13586752 CAAAAGACAT
* * * *
13586762 CAATCTCTTATCTCGATCATGAGGCAAATTGAAGCATC
1 CAATCTTTTACCTCAATCATGAGGCAGATTGAAGCATC
* *
13586800 CAATCTTTTACC-CTAATCA-GAAGGTAGATTGAAGACACAC
1 CAATCTTTTACCTC-AATCATG-AGGCAGATTGAAG-CA-TC
* * *
13586840 CAATCTCTTA-CTCCGATCATGGGGCAGATTGAAGCATC
1 CAATCTTTTACCT-CAATCATGAGGCAGATTGAAGCATC
* * * *
13586878 CAATCTTTTACCCCGATCAT-AGGGCAGATTGGAGAATC
1 CAATCTTTTACCTCAATCATGA-GGCAGATTGAAGCATC
* * * ** * *
13586916 CAATCTCTTACTTTAATCAAAAGGCAGACT-ACAGAATC
1 CAATCTTTTACCTCAATCATGAGGCAGATTGA-AGCATC
* *
13586954 CAATCTTTTACCTTAATCA-GAAGGCAGATT-ACAGAATC
1 CAATCTTTTACCTCAATCATG-AGGCAGATTGA-AGCATC
* * ** *
13586992 CAATCTCTTACCTTAATCAAAAGGCAGATTGAAGAATC
1 CAATCTTTTACCTCAATCATGAGGCAGATTGAAGCATC
* * * *
13587030 CAATCTTTTACCTTAATTA-GAAGGCAAATTGAAGACAGC
1 CAATCTTTTACCTCAATCATG-AGGCAGATTGAAG-CATC
* *
13587069 CAATCTTTTACTTCGATCAT-AGAGCAGATTGAAGCATC
1 CAATCTTTTACCTCAATCATGAG-GCAGATTGAAGCATC
* * * *
13587107 CAATCTTTTACCCCGATCATGGGGCAGATTGAAGAATC
1 CAATCTTTTACCTCAATCATGAGGCAGATTGAAGCATC
* * **
13587145 CAATCTCTTACCTTAATCA-GAAGGCAGATTGAAGACAAA
1 CAATCTTTTACCTCAATCATG-AGGCAGATTGAAG-CATC
* *
13587184 CAATCTTTTA-CTCCAATCATAAAGCAGATTGAAGCATC
1 CAATCTTTTACCT-CAATCATGAGGCAGATTGAAGCATC
* * *
13587222 CAATCTTTTACCCCGATCATGAGGCAGATTGAAGAATC
1 CAATCTTTTACCTCAATCATGAGGCAGATTGAAGCATC
* * **
13587260 CAATCTCTTACCTTAATCA-GAAGGCAGATTGAAAAATC
1 CAATCTTTTACCTCAATCATG-AGGCAGATTGAAGCATC
* * * **
13587298 CAATCTCTTACCTTAATCA-GAAGGCAGATTGAAGAGAAA
1 CAATCTTTTACCTCAATCATG-AGGCAGATTGAAG-CATC
* *
13587337 CAATCTTTTA-CTCTGATCATG-GAGCAGATTAAAGCATC
1 CAATCTTTTACCTC-AATCATGAG-GCAGATTGAAGCATC
* * * * ** *
13587375 TAATCTTTTACCCCGATCATGGGGCAGATTGAATAATT
1 CAATCTTTTACCTCAATCATGAGGCAGATTGAAGCATC
13587413 CAATCTTTTACC-CTAATCA-GAGAGCAGATTGAAGACATC
1 CAATCTTTTACCTC-AATCATGAG-GCAGATTGAAG-CATC
* * * *
13587452 CAATCTCTTACCTTAATCA-GAAGGCAGATTGAA-AATAGA
1 CAATCTTTTACCTCAATCATG-AGGCAGATTGAAGCAT--C
* * *
13587491 CAATCTCTTA-CTCGATCATG-GAGCAAATTGAAGCATC
1 CAATCTTTTACCTCAATCATGAG-GCAGATTGAAGCATC
* *
13587528 CAATCTTTTACCTTAATCA-GAGGGCAGATTGAAGACATT
1 CAATCTTTTACCTCAATCATGA-GGCAGATTGAAG-CATC
* * * *
13587567 CAATCTTTTACCTTAATTA-GAAGGCAGATTGAAGAAAC
1 CAATCTTTTACCTCAATCATG-AGGCAGATTGAAGCATC
* *
13587605 CAATTTTTTA-CTCCAATCATG-GAGCAGATTGAAGCATT
1 CAATCTTTTACCT-CAATCATGAG-GCAGATTGAAGCATC
13587643 CAA-CATTTTACC
1 CAATC-TTTTACC
13587655 CTAAATTAAA
Statistics
Matches: 686, Mismatches: 118, Indels: 101
0.76 0.13 0.11
Matches are distributed among these distances:
37 23 0.03
38 462 0.67
39 170 0.25
40 29 0.04
41 2 0.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (38 bp):
CAATCTTTTACCTCAATCATGAGGCAGATTGAAGCATC
Found at i:13587118 original size:115 final size:115
Alignment explanation
Indices: 13586762--13587608 Score: 724
Period size: 115 Copynumber: 7.4 Consensus size: 115
13586752 CAAAAGACAT
* * * * * * * * *
13586762 CAATCTCTTATCTCGATCATGAGGCAAATTGAAGCATCCAATCTTTTACCCTAATCAGAAGGTAG
1 CAATCTTTTACCTTGATCATAAGGCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAG
* * * * *
13586827 ATTGAAGACACACCAATCTCTTACTCCGATCATG-GGGCAGATTGAAGCATC
66 ATTGAAGACA-TCCAATCTTTTACTTCAATCA-GAGAGCAGATTGAAGCATC
** * * * *
13586878 CAATCTTTTACCCCGATCATAGGGCAGATTGGAGAATCCAATCTCTTACTTTAATCAAAAGGCAG
1 CAATCTTTTACCTTGATCATAAGGCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAG
* *
13586943 ACT-ACAGA-ATCCAATCTTTTACCTT-AATCAGA-AGGCAGATT-ACAGAATC
66 ATTGA-AGACATCCAATCTTTTA-CTTCAATCAGAGA-GCAGATTGA-AGCATC
* * * * * *
13586992 CAATCTCTTACCTTAATCAAAAGGCAGATTGAAGAATCCAATCTTTTACCTTAATTAGAAGGCAA
1 CAATCTTTTACCTTGATCATAAGGCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAG
* * *
13587057 ATTGAAGACAGCCAATCTTTTACTTCGATCATAGAGCAGATTGAAGCATC
66 ATTGAAGACATCCAATCTTTTACTTCAATCAGAGAGCAGATTGAAGCATC
** **
13587107 CAATCTTTTACCCCGATCATGGGGCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAG
1 CAATCTTTTACCTTGATCATAAGGCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAG
** * * *
13587172 ATTGAAGACAAACAATCTTTTACTCCAATCATAAAGCAGATTGAAGCATC
66 ATTGAAGACATCCAATCTTTTACTTCAATCAGAGAGCAGATTGAAGCATC
** *
13587222 CAATCTTTTACCCCGATCATGAGGCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAG
1 CAATCTTTTACCTTGATCATAAGGCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAG
* * * **
13587287 ATTGAA-AAATCCAATCTCTTACCTT-AATCAGA-AGGCAGATTGAAGAGAAA
66 ATTGAAGACATCCAATCTTTTA-CTTCAATCAGAGA-GCAGATTGAAG-CATC
* * * * * *** *
13587337 CAATCTTTTA-CTCTGATCAT-GGAGCAGATTAAAGCATCTAATCTTTTACCCCGATCATG-GGG
1 CAATCTTTTACCT-TGATCATAAG-GCAGATTGAAGAATCCAATCTCTTACCTTAATCA-GAAGG
* * *
13587399 CAGATTGAATA-ATTCAATCTTTTAC-CCTAATCAGAGAGCAGATTGAAGACATC
63 CAGATTGAAGACATCCAATCTTTTACTTC-AATCAGAGAGCAGATTGAAG-CATC
* * * * ** *
13587452 CAATCTCTTACCTTAATCAGAAGGCAGATTGAA-AATAGACAATCTCTTA-CTCGATCATGGA-G
1 CAATCTTTTACCTTGATCATAAGGCAGATTGAAGAAT--CCAATCTCTTACCTTAATCA-GAAGG
* * *
13587514 CAAATTGAAG-CATCCAATCTTTTACCTT-AATCAGAGGGCAGATTGAAGACATT
63 CAGATTGAAGACATCCAATCTTTTA-CTTCAATCAGAGAGCAGATTGAAG-CATC
* * * *
13587567 CAATCTTTTACCTTAATTAGAAGGCAGATTGAAGAAACCAAT
1 CAATCTTTTACCTTGATCATAAGGCAGATTGAAGAATCCAAT
13587609 TTTTTACTCC
Statistics
Matches: 602, Mismatches: 100, Indels: 60
0.79 0.13 0.08
Matches are distributed among these distances:
113 3 0.00
114 124 0.21
115 399 0.66
116 76 0.13
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (115 bp):
CAATCTTTTACCTTGATCATAAGGCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAG
ATTGAAGACATCCAATCTTTTACTTCAATCAGAGAGCAGATTGAAGCATC
Found at i:13587134 original size:153 final size:153
Alignment explanation
Indices: 13586775--13587608 Score: 796
Period size: 153 Copynumber: 5.4 Consensus size: 153
13586765 TCTCTTATCT
* * * * *
13586775 CGATCAT-GAGGCAAATTGAAGCATCCAATCTTTTACCCTAATCAGAAGGTAGATTGAAGACACA
1 CGATCATAGA-GCAGATTGAAGAATCCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGA-A-T
** * ** * *
13586839 CCAATCTCTTA-CTCCGATCATG-GGGCAGATTGAAG-CATCCAATCTTTTACCCCGATCAT-AG
63 CCAATCTCTTACCT-TAATCA-GAAGGCAGATTGAAGACAAACAATCTTTTACTCCAATCATGA-
* * * * * **
13586900 GGCAGATTGGAGAATCCAATCTCTTACTT
125 AGCAAATTGAAGCATCCAATCTTTTACCC
** * * * *
13586929 TAATCA-AAAGGCAGACT-ACAGAATCCAATCTTTTACCTTAATCAGAAGGCAGATT-ACAGAAT
1 CGATCATAGA-GCAGATTGA-AGAATCCAATCTTTTACCCTAATCAGAGGGCAGATTGA-AGAAT
* ** * *
13586991 CCAATCTCTTACCTTAATCAAAAGGCAGATTGAAGA-ATCCAATCTTTTAC-CTTAATTA-GAAG
63 CCAATCTCTTACCTTAATCAGAAGGCAGATTGAAGACAAACAATCTTTTACTC-CAATCATGAA-
* **
13587053 GCAAATTGAAGACAGCCAATCTTTTACTT
126 GCAAATTGAAG-CATCCAATCTTTTACCC
* **
13587082 CGATCATAGAGCAGATTGAAGCATCCAATCTTTTACCCCGATCATG-GGGCAGATTGAAGAATCC
1 CGATCATAGAGCAGATTGAAGAATCCAATCTTTTACCCTAATCA-GAGGGCAGATTGAAGAATCC
* *
13587146 AATCTCTTACCTTAATCAGAAGGCAGATTGAAGACAAACAATCTTTTACTCCAATCATAAAGCAG
65 AATCTCTTACCTTAATCAGAAGGCAGATTGAAGACAAACAATCTTTTACTCCAATCATGAAGCAA
13587211 ATTGAAGCATCCAATCTTTTACCC
130 ATTGAAGCATCCAATCTTTTACCC
* * * *
13587235 CGATCAT-GAGGCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAGATTGAAAAATCC
1 CGATCATAGA-GCAGATTGAAGAATCCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGAATCC
* ** * *
13587299 AATCTCTTACCTTAATCAGAAGGCAGATTGAAGAGAAACAATCTTTTACTCTGATCATGGAGCAG
65 AATCTCTTACCTTAATCAGAAGGCAGATTGAAGACAAACAATCTTTTACTCCAATCATGAAGCAA
* *
13587364 ATTAAAGCATCTAATCTTTTACCC
130 ATTGAAGCATCCAATCTTTTACCC
* * * * *
13587388 CGATCATGGGGCAGATTGAATAATTCAATCTTTTACCCTAATCAGAGAGCAGATTGAAGACATCC
1 CGATCATAGAGCAGATTGAAGAATCCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGA-ATCC
* * * * * *
13587453 AATCTCTTACCTTAATCAGAAGGCAGATTGAAAATAGACAATCTCTTACT-CGATCATGGAGCAA
65 AATCTCTTACCTTAATCAGAAGGCAGATTGAAGACAAACAATCTTTTACTCCAATCATGAAGCAA
*
13587517 ATTGAAGCATCCAATCTTTTACCT
130 ATTGAAGCATCCAATCTTTTACCC
** * * * * * * *
13587541 TAATCAGAGGGCAGATTGAAGACATTCAATCTTTTACCTTAATTAGAAGGCAGATTGAAGAAACC
1 CGATCATAGAGCAGATTGAAGA-ATCCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGAATCC
13587606 AAT
65 AAT
13587609 TTTTTACTCC
Statistics
Matches: 576, Mismatches: 82, Indels: 45
0.82 0.12 0.06
Matches are distributed among these distances:
151 1 0.00
152 57 0.10
153 352 0.61
154 163 0.28
155 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (153 bp):
CGATCATAGAGCAGATTGAAGAATCCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGAATCCA
ATCTCTTACCTTAATCAGAAGGCAGATTGAAGACAAACAATCTTTTACTCCAATCATGAAGCAAA
TTGAAGCATCCAATCTTTTACCC
Found at i:13587263 original size:268 final size:267
Alignment explanation
Indices: 13586783--13587655 Score: 1002
Period size: 268 Copynumber: 3.3 Consensus size: 267
13586773 CTCGATCATG
* * * *
13586783 AGGCAAATTGAAG-CATCCAATCTTTTACCCTAATCAGA-AGGTAGATTGAAGACACACCAATCT
1 AGGCAAATTGAAGACAACCAATCTTTTACCCTAATCATAGA-GCAGATTGAAG-CA-TCCAATCT
* * * ** * * *
13586846 CTTACTCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCCGATCATAGGGCAGATTGGA
63 TTTACCCCGATCATGGGGCAGATTGAAGAATCCAATCTTTTACCCTAATCAGAAGGCAGATTGAA
* * **
13586911 GA-ATCCAATCTCTTACTTTAATCAAAAGGCAGACT-ACAGAATCCAATCTTTTACCTTAATCA-
128 GACATCCAATCTCTTACTCTAATCAAAA-GCAGATTGA-AGAATCCAATCTTTTACCTCGATCAT
*
13586973 GAAGGCAGATT-ACAGAATCCAATCTCTTACCTTAATCAAAAGGCAGATTGAAGAATCCAATCTT
191 G-AGGCAGATTGA-AGAATCCAATCTCTTACCTTAATCAGAAGGCAGATTGAAGAATCCAATCTT
13587037 TTACCTTAATTAGA
254 TTACCTTAATTAGA
* * *
13587051 AGGCAAATTGAAGACAGCCAATCTTTTA-CTTCGATCATAGAGCAGATTGAAGCATCCAATCTTT
1 AGGCAAATTGAAGACAACCAATCTTTTACCCT-AATCATAGAGCAGATTGAAGCATCCAATCTTT
* *
13587115 TACCCCGATCATGGGGCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAGATTGAAGA
65 TACCCCGATCATGGGGCAGATTGAAGAATCCAATCTTTTACCCTAATCAGAAGGCAGATTGAAGA
** * * * *
13587180 CAAACAATCTTTTACTCCAATCATAAAGCAGATTGAAGCATCCAATCTTTTACCCCGATCATGAG
130 CATCCAATCTCTTACTCTAATCA-AAAGCAGATTGAAGAATCCAATCTTTTACCTCGATCATGAG
* *
13587245 GCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAGATTGAAAAATCCAATCTCTTACC
194 GCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAGATTGAAGAATCCAATCTTTTACC
*
13587310 TTAATCAGA
259 TTAATTAGA
* * * * * * * *
13587319 AGGCAGATTGAAGAGAAACAATCTTTTACTCTGATCATGGAGCAGATTAAAGCATCTAATCTTTT
1 AGGCAAATTGAAGACAACCAATCTTTTACCCTAATCATAGAGCAGATTGAAGCATCCAATCTTTT
* *
13587384 ACCCCGATCATGGGGCAGATTGAATAATTCAATCTTTTACCCTAATCAG-AGAGCAGATTGAAGA
66 ACCCCGATCATGGGGCAGATTGAAGAATCCAATCTTTTACCCTAATCAGAAG-GCAGATTGAAGA
* * *
13587448 CATCCAATCTCTTAC-CTTAATCAGAAGGCAGATTGAA-AATAGACAATCTCTTA-CTCGATCAT
130 CATCCAATCTCTTACTC-TAATCA-AAAGCAGATTGAAGAAT--CCAATCTTTTACCTCGATCAT
* * * * *
13587510 G-GAGCAAATTGAAGCATCCAATCTTTTACCTTAATCAGAGGGCAGATTGAAGACATTCAATCTT
191 GAG-GCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAGATTGAAGA-ATCCAATCTT
13587574 TTACCTTAATTAGA
254 TTACCTTAATTAGA
* * * *
13587588 AGGCAGATTGAAGA-AACCAATTTTTTACTCC-AATCATGGAGCAGATTGAAGCATTCAA-CATT
1 AGGCAAATTGAAGACAACCAATCTTTTAC-CCTAATCATAGAGCAGATTGAAGCATCCAATC-TT
13587650 TTACCC
64 TTACCC
13587656 TAAATTAAAG
Statistics
Matches: 520, Mismatches: 68, Indels: 34
0.84 0.11 0.05
Matches are distributed among these distances:
267 71 0.14
268 368 0.71
269 80 0.15
270 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (267 bp):
AGGCAAATTGAAGACAACCAATCTTTTACCCTAATCATAGAGCAGATTGAAGCATCCAATCTTTT
ACCCCGATCATGGGGCAGATTGAAGAATCCAATCTTTTACCCTAATCAGAAGGCAGATTGAAGAC
ATCCAATCTCTTACTCTAATCAAAAGCAGATTGAAGAATCCAATCTTTTACCTCGATCATGAGGC
AGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAGATTGAAGAATCCAATCTTTTACCTT
AATTAGA
Found at i:13588407 original size:13 final size:15
Alignment explanation
Indices: 13588389--13588420 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
13588379 TTGAAGGTAG
13588389 TTTTAT-TTCTG-CA
1 TTTTATATTCTGCCA
13588402 TTTTATATTCTGCCA
1 TTTTATATTCTGCCA
13588417 TTTT
1 TTTT
13588421 CTTTTTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 5 0.29
15 6 0.35
ACGTcount: A:0.16, C:0.16, G:0.06, T:0.62
Consensus pattern (15 bp):
TTTTATATTCTGCCA
Found at i:13591325 original size:30 final size:30
Alignment explanation
Indices: 13591291--13591566 Score: 185
Period size: 29 Copynumber: 9.3 Consensus size: 30
13591281 GAGAATTCGA
**
13591291 GGTTAAAACATAATTTTGGAAAAGTTTAGG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
* *
13591321 GGTTAAAATATAATTTT-GAGAAATTTTA-G
1 GGTTAAAATGTAATTTTGGA-AAAGTTTAGG
** *
13591350 GGTTAAAATGTGGTTTT-AAAGAAGTTTA-G
1 GGTTAAAATGTAATTTTGGAA-AAGTTTAGG
* *
13591379 GGTTAAAATGTGATTTTAGG-AAGGTTT-GG
1 GGTTAAAATGTAATTTT-GGAAAAGTTTAGG
* *
13591408 GGTCAAAATGTGATTTT--AAAGGAGTTTAGGG
1 GGTTAAAATGTAATTTTGGAAA--AGTTTA-GG
* * * * *
13591439 GGTCAAAATGTGATTCTAGAAAATTTTAGG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
*
13591469 GGTTAAAATGTAATTTTGGAAAA-TTTTGAG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAG-G
** * *
13591499 GGTTAAAATACAATTTTGAAAAAGTTTAAG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
* * * * *
13591529 GG-TCAAATATAATTTTAGAGAAGTTTAAG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
13591558 GGTTAAAAT
1 GGTTAAAAT
13591567 AGGACTTTTA
Statistics
Matches: 201, Mismatches: 30, Indels: 30
0.77 0.11 0.11
Matches are distributed among these distances:
27 2 0.01
28 1 0.00
29 95 0.47
30 74 0.37
31 26 0.13
33 3 0.01
ACGTcount: A:0.38, C:0.02, G:0.24, T:0.36
Consensus pattern (30 bp):
GGTTAAAATGTAATTTTGGAAAAGTTTAGG
Found at i:13591416 original size:58 final size:59
Alignment explanation
Indices: 13591312--13591566 Score: 198
Period size: 60 Copynumber: 4.3 Consensus size: 59
13591302 AATTTTGGAA
* * * * *
13591312 AAGTTTAGGGGTTAAAATATAATTTTGAGAAATTTTAGGGTTAAAATGTGGTTTTAAAG
1 AAGTTTAGGGGTTAAAATGTGATTTTGAGAAAGTTTAGGGTCAAAATGTGATTTTAAAG
* *
13591371 AAGTTTA-GGGTTAAAATGTGATTTT-AGGAAGGTTTGGGGTCAAAATGTGATTTTAAAG
1 AAGTTTAGGGGTTAAAATGTGATTTTGA-GAAAGTTTAGGGTCAAAATGTGATTTTAAAG
* * * * * * *
13591429 GAGTTTAGGGGGTCAAAATGTGATTCT-AGAAAATTTTAGGGGTTAAAATGTAATTTTGGAA-
1 AAGTTTA-GGGGTTAAAATGTGATTTTGAG-AAAGTTTA-GGGTCAAAATGTGATTTT-AAAG
* *** * * * *
13591490 AA-TTTTGAGGGTTAAAATACAATTTTGAAAAAGTTTAAGGGTC-AAATATAATTTTAGAG
1 AAGTTTAG-GGGTTAAAATGTGATTTTGAGAAAGTTT-AGGGTCAAAATGTGATTTTAAAG
*
13591549 AAGTTTAAGGGTTAAAAT
1 AAGTTTAGGGGTTAAAAT
13591567 AGGACTTTTA
Statistics
Matches: 154, Mismatches: 31, Indels: 22
0.74 0.15 0.11
Matches are distributed among these distances:
57 1 0.01
58 49 0.32
59 32 0.21
60 51 0.33
61 19 0.12
62 2 0.01
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.36
Consensus pattern (59 bp):
AAGTTTAGGGGTTAAAATGTGATTTTGAGAAAGTTTAGGGTCAAAATGTGATTTTAAAG
Found at i:13592662 original size:15 final size:15
Alignment explanation
Indices: 13592642--13592672 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
13592632 TTTTATTTAA
13592642 AATTATATATTTATT
1 AATTATATATTTATT
*
13592657 AATTATGTATTTATT
1 AATTATATATTTATT
13592672 A
1 A
13592673 TACTTTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
AATTATATATTTATT
Found at i:13593221 original size:20 final size:20
Alignment explanation
Indices: 13593198--13593239 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
13593188 GTATTTGGAC
* *
13593198 ATTTTAAATTTGAATTTAAA
1 ATTTTAAATCTAAATTTAAA
13593218 ATTTTAAATCTAAATTTAAA
1 ATTTTAAATCTAAATTTAAA
13593238 AT
1 AT
13593240 GTATTTAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTTTAAATCTAAATTTAAA
Found at i:13595621 original size:31 final size:31
Alignment explanation
Indices: 13595576--13595671 Score: 88
Period size: 31 Copynumber: 3.1 Consensus size: 31
13595566 TAAATTATAC
13595576 TTTTAGTTACTAAATTA-T-AGGTAAGTTTTCA
1 TTTTAGTTACTAAATTATTCA-G-AAGTTTTCA
* *
13595607 TTTTTGTTATTAAATTATTCAGAAGTTTTCA
1 TTTTAGTTACTAAATTATTCAGAAGTTTTCA
* * * * * *
13595638 TTTTAGTCATTGAACTATTCAAAAGTTTTTA
1 TTTTAGTTACTAAATTATTCAGAAGTTTTCA
13595669 TTT
1 TTT
13595672 AAGTCATGGA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
31 52 0.95
32 2 0.04
33 1 0.02
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.52
Consensus pattern (31 bp):
TTTTAGTTACTAAATTATTCAGAAGTTTTCA
Found at i:13595677 original size:31 final size:31
Alignment explanation
Indices: 13595622--13595708 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
13595612 GTTATTAAAT
* * * *
13595622 TATTCAGAAGTTTTCATTTTAGTCATTGAAC
1 TATTCAAAAGTTTTTATTTAAGTCATGGAAC
13595653 TATTCAAAAGTTTTTATTTAAGTCATGGAAC
1 TATTCAAAAGTTTTTATTTAAGTCATGGAAC
13595684 TATTCAAAAGTTTTTATTTAAGTCA
1 TATTCAAAAGTTTTTATTTAAGTCA
13595709 CACGGCTGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 52 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.45
Consensus pattern (31 bp):
TATTCAAAAGTTTTTATTTAAGTCATGGAAC
Found at i:13600867 original size:3 final size:3
Alignment explanation
Indices: 13600859--13600883 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
13600849 AGACAGTAGC
13600859 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
13600884 TACGTGTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:13608367 original size:85 final size:85
Alignment explanation
Indices: 13608231--13608388 Score: 201
Period size: 85 Copynumber: 1.9 Consensus size: 85
13608221 GACTTGGTCT
* * *
13608231 ACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCACTTCTCTGTATCTCAT
1 ACTTCTCTGCATCTCATCAAGAAGATGACCACCTCATTGCTTCAATCCACTTCTCTGTATCTCAT
13608296 CAAGAAGACGGATTTGGTTC
66 CAAGAAGACGGATTTGGTTC
* * * * * * *
13608316 ACTTCTCTGCATCTCGTCAGGAAGATGACCACTTTATTGCTTCGA-CTCACTTTTTTGTATCTCA
1 ACTTCTCTGCATCTCATCAAGAAGATGACCACCTCATTGCTTCAATC-CACTTCTCTGTATCTCA
*
13608380 TCAGGAAGA
65 TCAAGAAGA
13608389 TGGGGTTTGA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
84 1 0.02
85 60 0.98
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (85 bp):
ACTTCTCTGCATCTCATCAAGAAGATGACCACCTCATTGCTTCAATCCACTTCTCTGTATCTCAT
CAAGAAGACGGATTTGGTTC
Found at i:13608446 original size:208 final size:208
Alignment explanation
Indices: 13607945--13608885 Score: 1226
Period size: 208 Copynumber: 4.5 Consensus size: 208
13607935 TGTCTGACCT
* * * * * ** *
13607945 CTTTCTTTGTATCTCATCAGGAAGTTAGGGTTTCAAAGTTTAATTCACA-TGAGCTCCGATTCAT
1 CTTT-TTTGTATCTCATCAGGAAGATGGGGTTT-GAAGTCTCATTCGTATTGAGCTTCGATTCAT
* * *
13608009 TGATTTGGCCTACTTCTCTGTATCTCATCAAGAAGATGACCACTTCATTGTTTTAATCCACTTCT
64 TGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACCTCATTGTTTCAATCCACTTCT
* * * *
13608074 CTGTATCTCATCAGGAAGACTGATTTTAGGTTCACTTCTCTACATTTCGTCAGGAAGATAACCAC
129 CTGTATCTCATCAAGAAGACGGA-TTT-GGTTCACTTCTCTACATCTCATCAGGAAGATAACCAC
* **
13608139 TTTATTACTTTAACCCA
192 TTTATTGCTTCGACCCA
* *
13608156 -TTTCTATTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCAT
1 CTTT-T-TTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGATTCAT
* *
13608220 TGACTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCACTTCT
64 TGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACCTCATTGTTTCAATCCACTTCT
* * *
13608285 CTGTATCTCATCAAGAAGACGGATTTGGTTCACTTCTCTGCATCTCGTCAGGAAGATGACCACTT
129 CTGTATCTCATCAAGAAGACGGATTTGGTTCACTTCTCTACATCTCATCAGGAAGATAACCACTT
*
13608350 TATTGCTTCGACTCA
194 TATTGCTTCGACCCA
* *
13608365 CTTTTTTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCAATCCATTG
1 CTTTTTTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGATTCATTG
** * * *
13608430 ATTTGGTCTACTTCTCTACATCTCATTAGGAAGATGACCACGTCATTGTTTCAATCCACTTCTCT
66 ATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACCTCATTGTTTCAATCCACTTCTCT
* * * *
13608495 GTATCTCATCAAGAAGACGGATTTGGTTCACTTATCTGCATCTCATCAAGAAGATGACCACTTTA
131 GTATCTCATCAAGAAGACGGATTTGGTTCACTTCTCTACATCTCATCAGGAAGATAACCACTTTA
13608560 TTGCTTCGACCCA
196 TTGCTTCGACCCA
* *
13608573 CTTCTGTGTATCTCATCAGGAAGATGGGGTTT-AGAGTCTCATTCGTATTGAGCTTCGATTCATT
1 CTTTTTTGTATCTCATCAGGAAGATGGGGTTTGA-AGTCTCATTCGTATTGAGCTTCGATTCATT
* * * * * * *
13608637 GATTTGGTCTACTTATCTATATCTCATTAGGAAGATGATCGCCTCATTGTTTCAATCCACTTTTC
65 GATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACCTCATTGTTTCAATCCACTTCTC
* * * *
13608702 TATATCTCATCAGGAAGACAGATTTAGTTCACTTCTCTACATCTCATCAGGAAGATAACCACTTT
130 TGTATCTCATCAAGAAGACGGATTTGGTTCACTTCTCTACATCTCATCAGGAAGATAACCACTTT
13608767 ATTGCTTCGACCCA
195 ATTGCTTCGACCCA
* * * * * * **
13608781 CTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAAGTTTCACTC-TCATTGAGTTTCTCTTCAT
1 CTTTTTTGTATCTCATCAGGAAGATGGGGTTTG-AAGTCTCATTCGT-ATTGAGCTTCGATTCAT
*
13608845 TG-TTCTGGTCTGCTTCTCTGTATCTCATCAAGAAGATGACC
64 TGATT-TGGTCTACTTCTCTGTATCTCATCAAGAAGATGACC
13608886 TTTTGAAGTT
Statistics
Matches: 652, Mismatches: 70, Indels: 18
0.88 0.09 0.02
Matches are distributed among these distances:
207 1 0.00
208 409 0.63
209 102 0.16
210 22 0.03
211 118 0.18
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.37
Consensus pattern (208 bp):
CTTTTTTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGATTCATTG
ATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACCTCATTGTTTCAATCCACTTCTCT
GTATCTCATCAAGAAGACGGATTTGGTTCACTTCTCTACATCTCATCAGGAAGATAACCACTTTA
TTGCTTCGACCCA
Found at i:13608574 original size:85 final size:85
Alignment explanation
Indices: 13608429--13608596 Score: 221
Period size: 85 Copynumber: 2.0 Consensus size: 85
13608419 TCAATCCATT
* * * * *
13608429 GATTTGGTCTACTTCTCTACATCTCATTAGGAAGATGACCACGTCATTGTTTCAATCCACTTCTC
1 GATTTGGTCTACTTATCTACATCTCATCAAGAAGATGACCACGTCATTGCTTCAACCCACTTCTC
13608494 TGTATCTCATCAAGAAGACG
66 TGTATCTCATCAAGAAGACG
* * * *
13608514 GATTTGGT-TCACTTATCTGCATCTCATCAAGAAGATGACCACTTTATTGCTTCGACCCACTTCT
1 GATTTGGTCT-ACTTATCTACATCTCATCAAGAAGATGACCACGTCATTGCTTCAACCCACTTCT
* *
13608578 GTGTATCTCATCAGGAAGA
65 CTGTATCTCATCAAGAAGA
13608597 TGGGGTTTAG
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 1 0.01
85 70 0.99
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (85 bp):
GATTTGGTCTACTTATCTACATCTCATCAAGAAGATGACCACGTCATTGCTTCAACCCACTTCTC
TGTATCTCATCAAGAAGACG
Found at i:13608907 original size:76 final size:76
Alignment explanation
Indices: 13608781--13608978 Score: 344
Period size: 76 Copynumber: 2.6 Consensus size: 76
13608771 CTTCGACCCA
***
13608781 CTTCTCTGTATCTCATCAAGAAGATG-GGGTTTGAAAGTTTCACTCTCATTGAGTTTCTCTTCAT
1 CTTCTCTGTATCTCATCAAGAAGATGACCTTTTG-AAGTTTCACTCTCATTGAGTTTCTCTTCAT
13608845 TGTTCTGGTCTG
65 TGTTCTGGTCTG
13608857 CTTCTCTGTATCTCATCAAGAAGATGACCTTTTGAAGTTTCACTCTCATTGAGTTTCTCTTCATT
1 CTTCTCTGTATCTCATCAAGAAGATGACCTTTTGAAGTTTCACTCTCATTGAGTTTCTCTTCATT
*
13608922 GTTTTGGTCTG
66 GTTCTGGTCTG
13608933 CTTCTCTGTATCTCATCAAGAAGATGACCTTTTGAAGTTTCACTCT
1 CTTCTCTGTATCTCATCAAGAAGATGACCTTTTGAAGTTTCACTCT
13608979 TCCCTATGAT
Statistics
Matches: 117, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
76 113 0.97
77 4 0.03
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.42
Consensus pattern (76 bp):
CTTCTCTGTATCTCATCAAGAAGATGACCTTTTGAAGTTTCACTCTCATTGAGTTTCTCTTCATT
GTTCTGGTCTG
Found at i:13622202 original size:17 final size:17
Alignment explanation
Indices: 13622180--13622213 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
13622170 TTTTGGATGA
*
13622180 ATTTGGGCTTGTTGGGT
1 ATTTGGGCCTGTTGGGT
13622197 ATTTGGGCCTGTTGGGT
1 ATTTGGGCCTGTTGGGT
13622214 TAGGTTTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.09, G:0.41, T:0.44
Consensus pattern (17 bp):
ATTTGGGCCTGTTGGGT
Found at i:13622330 original size:14 final size:15
Alignment explanation
Indices: 13622311--13622348 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
13622301 AAATTTTGTT
*
13622311 TTTGTTTTTGTTT-A
1 TTTGTTTTGGTTTGA
*
13622325 TTTGTTTTGGTTTGT
1 TTTGTTTTGGTTTGA
13622340 TTTGTTTTG
1 TTTGTTTTG
13622349 TTGGGCCCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.03, C:0.00, G:0.21, T:0.76
Consensus pattern (15 bp):
TTTGTTTTGGTTTGA
Found at i:13622348 original size:20 final size:19
Alignment explanation
Indices: 13622304--13622350 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
13622294 TTTAATTAAA
*
13622304 TTTTGTTTTTGTTTTTGTT
1 TTTTGTTTTGGTTTTTGTT
13622323 TATTTGTTTTGGTTTGTT-TT
1 T-TTTGTTTTGGTTT-TTGTT
13622343 GTTTTGTT
1 -TTTTGTT
13622351 GGGCCCGAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 1 0.04
20 20 0.83
21 3 0.12
ACGTcount: A:0.02, C:0.00, G:0.19, T:0.79
Consensus pattern (19 bp):
TTTTGTTTTGGTTTTTGTT
Found at i:13626545 original size:3 final size:3
Alignment explanation
Indices: 13626537--13626569 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
13626527 AATATTTTAA
13626537 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
13626570 TATTATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:13626574 original size:3 final size:3
Alignment explanation
Indices: 13626568--13626592 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
13626558 AATAATAATA
13626568 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
13626593 GACTTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:13632800 original size:13 final size:14
Alignment explanation
Indices: 13632782--13632810 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
13632772 GAATTCACAA
13632782 AAAAAGAAA-AAAG
1 AAAAAGAAAGAAAG
13632795 AAAAAGAAAGAAAG
1 AAAAAGAAAGAAAG
13632809 AA
1 AA
13632811 GAATATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAGAAAG
Found at i:13632806 original size:17 final size:16
Alignment explanation
Indices: 13632780--13632813 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
13632770 AAGAATTCAC
13632780 AAAAAAAGAAAAAAGA
1 AAAAAAAGAAAAAAGA
*
13632796 AAAAGAAAGAAAGAAGA
1 AAAA-AAAGAAAAAAGA
13632813 A
1 A
13632814 TATTTTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAAAAAAGA
Found at i:13634636 original size:19 final size:19
Alignment explanation
Indices: 13634576--13634636 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
13634566 TCCAATTTTA
*
13634576 AAAATATATATTTAAATTAAA
1 AAAATATATATTTAAA--AAT
*
13634597 AAAAGTA-ATTATTTAATAAT
1 AAAA-TATA-TATTTAAAAAT
13634617 AAAATATATATTTAAAAAT
1 AAAATATATATTTAAAAAT
13634636 A
1 A
13634637 TACATTACTC
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
19 13 0.38
20 7 0.21
21 5 0.15
22 9 0.26
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAATATATATTTAAAAAT
Found at i:13634781 original size:16 final size:15
Alignment explanation
Indices: 13634738--13634781 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
13634728 AAAGTTTAAG
* *
13634738 AAAATACAAAAATTA
1 AAAATATAATAATTA
13634753 AAAATATATATAATTCA
1 AAAATATA-ATAATT-A
13634770 AAAATATAATAA
1 AAAATATAATAA
13634782 ATTGAGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 7 0.28
16 9 0.36
17 9 0.36
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAATATAATAATTA
Found at i:13634784 original size:17 final size:16
Alignment explanation
Indices: 13634738--13634784 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
13634728 AAAGTTTAAG
*
13634738 AAAATACAA-AAATTA
1 AAAATATAATAAATTA
13634753 AAAATAT-ATATAATTCA
1 AAAATATAATA-AATT-A
13634770 AAAATATAATAAATT
1 AAAATATAATAAATT
13634785 GAGAATACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 1 0.04
15 7 0.26
16 4 0.15
17 12 0.44
18 3 0.11
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAATATAATAAATTA
Found at i:13634872 original size:19 final size:20
Alignment explanation
Indices: 13634850--13634896 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
13634840 CAATTTTTTA
* *
13634850 ATTATAATTATAAT-TGTTT
1 ATTAAAATTATAATATATTT
*
13634869 ATTAAAATTGTAATATATTT
1 ATTAAAATTATAATATATTT
13634889 ATTAAAAT
1 ATTAAAAT
13634897 AATTATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (20 bp):
ATTAAAATTATAATATATTT
Found at i:13638484 original size:25 final size:25
Alignment explanation
Indices: 13638420--13638526 Score: 92
Period size: 25 Copynumber: 4.2 Consensus size: 25
13638410 CAAGATTGAA
*
13638420 TAAAT-AAAAACAAAATAAAAGGAT
1 TAAATAAAAAATAAAATAAAAGGAT
* ***
13638444 TATTATTTTAAA-AAAATAAAAGGAT
1 TA-AATAAAAAATAAAATAAAAGGAT
*
13638469 TAAATAAAAAATAAAACAAAAGGAT
1 TAAATAAAAAATAAAATAAAAGGAT
* *
13638494 TGAATTAAAAAAATAAAATAAAAAGTAT
1 T-AAAT-AAAAAATAAAAT-AAAAGGAT
13638522 TAAAT
1 TAAAT
13638527 TTAAAAGAAT
Statistics
Matches: 65, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
24 7 0.11
25 30 0.46
26 6 0.09
27 14 0.22
28 8 0.12
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.24
Consensus pattern (25 bp):
TAAATAAAAAATAAAATAAAAGGAT
Found at i:13639938 original size:13 final size:14
Alignment explanation
Indices: 13639920--13639949 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
13639910 AGGATTTTTA
13639920 TTTAATTTTTG-GT
1 TTTAATTTTTGTGT
13639933 TTTAATTTTTGTGT
1 TTTAATTTTTGTGT
13639947 TTT
1 TTT
13639950 GTTTTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (14 bp):
TTTAATTTTTGTGT
Found at i:13640456 original size:39 final size:39
Alignment explanation
Indices: 13640336--13640751 Score: 187
Period size: 39 Copynumber: 10.4 Consensus size: 39
13640326 TGAATTAGGT
* * * * *
13640336 GTAAAATATTAGATGACTTCAATCTACCCCATGAT-TGG
1 GTAAAAGATTGGATGACTTCAATCTACCTCATGGTCAGG
* * * * * *
13640374 GTAAGAGATTGGATGGTGTCTTTAACCTACCCTC-TAGTTAGG
1 GTAAAAGATTGGA---TGACTTCAATCTA-CCTCATGGTCAGG
* *
13640416 GTAAAATATTGGATGACTTTAATCTACCTCATGGTCAGG
1 GTAAAAGATTGGATGACTTCAATCTACCTCATGGTCAGG
* * *
13640455 GTAAGAGATTGGATGATGTCTTCAATTTACCTTC-TGGTTAGG
1 GTAAAAGATTGGATGA---CTTCAATCTACC-TCATGGTCAGG
* * *
13640497 GTAAAAGATTGGATGGCTTCAATCTGCCTCATGGTCAAG
1 GTAAAAGATTGGATGACTTCAATCTACCTCATGGTCAGG
* * * * * * * *
13640536 GTAAGAGGTTAGATGGTGTCTTCAATTTGCTCTC-TAGTTAGG
1 GTAAAAGATT-G--GATGACTTCAATCTAC-CTCATGGTCAGG
* * * * * * * *
13640578 GTAAAAGATTAGACAGTCTTCAATCTGCC-CTTTGATTAGA
1 GTAAAAGATTGGA-TGACTTCAATCTACCTC-ATGGTCAGG
* * * * * *
13640618 GTAAAAGATTGGATGGCTTTAATCTGCCCCATGATTAGG
1 GTAAAAGATTGGATGACTTCAATCTACCTCATGGTCAGG
* * *
13640657 GTAAAAGATTGGATGGCTTCAATCTGCCTCATGGTTAGG
1 GTAAAAGATTGGATGACTTCAATCTACCTCATGGTCAGG
* * * * *
13640696 GTAAGAGATTGGATGGTGTCTTTAATCTACC-CTTTGGTTAGG
1 GTAAAAGATTGGA---TGACTTCAATCTACCTC-ATGGTCAGG
13640738 GTAAAAGATTGGAT
1 GTAAAAGATTGGAT
13640752 ATAGTGATGT
Statistics
Matches: 296, Mismatches: 59, Indels: 45
0.74 0.15 0.11
Matches are distributed among these distances:
38 17 0.06
39 125 0.42
40 31 0.10
41 13 0.04
42 105 0.35
43 5 0.02
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (39 bp):
GTAAAAGATTGGATGACTTCAATCTACCTCATGGTCAGG
Found at i:13640475 original size:81 final size:81
Alignment explanation
Indices: 13640314--13640751 Score: 431
Period size: 81 Copynumber: 5.4 Consensus size: 81
13640304 GTGTGGCTTC
* * * * * * *
13640314 AATCTACCCTTCTGAATTAGGTGTAAAATATTAGATGACTTCAATCTACCCCATGAT-TGGGTAA
1 AATCTACCC-TCT-AGTTAGG-GTAAAAGATTGGATGACTTCAATCTGCCTCATGGTCAGGGTAA
13640378 GAGATTGGATGGTGTCTTT
63 GAGATTGGATGGTGTCTTT
* * * *
13640397 AACCTACCCTCTAGTTAGGGTAAAATATTGGATGACTTTAATCTACCTCATGGTCAGGGTAAGAG
1 AATCTACCCTCTAGTTAGGGTAAAAGATTGGATGACTTCAATCTGCCTCATGGTCAGGGTAAGAG
* *
13640462 ATTGGATGATGTCTTC
66 ATTGGATGGTGTCTTT
* * * * *
13640478 AATTTACCTTCTGGTTAGGGTAAAAGATTGGATGGCTTCAATCTGCCTCATGGTCAAGGTAAGAG
1 AATCTACCCTCTAGTTAGGGTAAAAGATTGGATGACTTCAATCTGCCTCATGGTCAGGGTAAGAG
* * *
13640543 GTTAGATGGTGTCTTC
66 ATTGGATGGTGTCTTT
* * * * * * * * * * *
13640559 AATTTGCTCTCTAGTTAGGGTAAAAGATTAGACAGTCTTCAATCTGCC-CTTTGATTAGAGTAAA
1 AATCTACCCTCTAGTTAGGGTAAAAGATTGGA-TGACTTCAATCTGCCTC-ATGGTCAGGGTAAG
13640623 AGATTGGAT-G-G-CTTT
64 AGATTGGATGGTGTCTTT
* * *
13640638 AATCTGCCC-C-ATGATTAGGGTAAAAGATTGGATGGCTTCAATCTGCCTCATGGTTAGGGTAAG
1 AATCTACCCTCTA-G-TTAGGGTAAAAGATTGGATGACTTCAATCTGCCTCATGGTCAGGGTAAG
13640701 AGATTGGATGGTGTCTTT
64 AGATTGGATGGTGTCTTT
* *
13640719 AATCTACCCTTTGGTTAGGGTAAAAGATTGGAT
1 AATCTACCCTCTAGTTAGGGTAAAAGATTGGAT
13640752 ATAGTGATGT
Statistics
Matches: 295, Mismatches: 49, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
77 1 0.00
78 34 0.12
79 29 0.10
80 33 0.11
81 158 0.54
82 32 0.11
83 8 0.03
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (81 bp):
AATCTACCCTCTAGTTAGGGTAAAAGATTGGATGACTTCAATCTGCCTCATGGTCAGGGTAAGAG
ATTGGATGGTGTCTTT
Found at i:13640631 original size:121 final size:119
Alignment explanation
Indices: 13640415--13640751 Score: 313
Period size: 121 Copynumber: 2.8 Consensus size: 119
13640405 CTCTAGTTAG
* * * * * * * * *
13640415 GGTAAAATATTGGATGACTTTAATCTACCTCATGGTCAGGGTAAGAGATTGGATG-ATGTCTTCA
1 GGTAAAAGATTAGATGGCTTCAATCTGCCTCATAGTTAGGGTAAAAGATTAGA-GCA-GTCTTCA
* * * *
13640479 ATTTA-CCTTCTGGTTAGGGTAAAAGATTGGATGGCTTCAATCTGCCTCATGGTCAA
64 ATCTACCCTT-TGATTAGGGTAAAAGATTGGATGGCTTCAATCTGCCCCATGATCAA
* * *
13640535 GGTAAGAGGTTAGATGGTGTCTTCAATTTGCTCTC-TAGTTAGGGTAAAAGATTAGA-CAGTCTT
1 GGTAAAAGATTAGAT-G-G-CTTCAATCTGC-CTCATAGTTAGGGTAAAAGATTAGAGCAGTCTT
* * * * *
13640598 CAATCTGCCCTTTGATTAGAGTAAAAGATTGGATGGCTTTAATCTGCCCCATGATTAG
62 CAATCTACCCTTTGATTAGGGTAAAAGATTGGATGGCTTCAATCTGCCCCATGATCAA
* * * * ** *
13640656 GGTAAAAGATTGGATGGCTTCAATCTGCCTCATGGTTAGGGTAAGAGATTGGATGGTGTCTTTAA
1 GGTAAAAGATTAGATGGCTTCAATCTGCCTCATAGTTAGGGTAAAAGATTAGA-GCAGTCTTCAA
*
13640721 TCTACCCTTTGGTTAGGGTAAAAGATTGGAT
65 TCTACCCTTTGATTAGGGTAAAAGATTGGAT
13640752 ATAGTGATGT
Statistics
Matches: 174, Mismatches: 34, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
117 3 0.02
118 28 0.16
119 1 0.01
120 47 0.27
121 62 0.36
122 5 0.03
123 25 0.14
124 3 0.02
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.34
Consensus pattern (119 bp):
GGTAAAAGATTAGATGGCTTCAATCTGCCTCATAGTTAGGGTAAAAGATTAGAGCAGTCTTCAAT
CTACCCTTTGATTAGGGTAAAAGATTGGATGGCTTCAATCTGCCCCATGATCAA
Found at i:13640882 original size:93 final size:93
Alignment explanation
Indices: 13640768--13641467 Score: 474
Period size: 93 Copynumber: 7.3 Consensus size: 93
13640758 ATGTAACTTA
* * * *
13640768 ACTCCATTCCACTATAACCTCAGGGACATTGAGATCCATTACTTATTTTAATCTGATCCACTGTA
1 ACTCCATTCCACTGTAACCTCAGGGACATTGAGATCCGTTACTTATTTTAATCCGATCCACTGCA
*
13640833 ACTTCAGGGATATAGGATCTGATGCTTC
66 ACTTCAGGGATATAGGATTTGATGCTTC
* * ** ** * * *
13640861 ACTCCATTCCATTGTAACCTCAAGGACATTGAGATTTGCTTTGTTGTTTTAATCCGAACCACTAC
1 ACTCCATTCCACTGTAACCTCAGGGACATTGAGATCCG-TTACTTATTTTAATCCGATCCACTGC
13640926 AAC-TCAAGGG-TAT-GAGATTTGATGTTGTAACTTC
65 AACTTC-AGGGATATAG-GATTTGA---TG---CTTC
** * * * * *
13640960 TTTCCATTCCATTGTAACCTCAGGGATATTAAGATCCGTTACTCATTTTGATCCGATCCACTGCA
1 ACTCCATTCCACTGTAACCTCAGGGACATTGAGATCCGTTACTTATTTTAATCCGATCCACTGCA
*
13641025 ACTTCATGGATATAGGATTTGATGCTTC
66 ACTTCAGGGATATAGGATTTGATGCTTC
* * ** * * *
13641053 ACTCTATTCCATTGTAACCTCAAAGATATTGAGATCTGCTT-CGTT-GTTTAATCCGA-CCTACT
1 ACTCCATTCCACTGTAACCTCAGGGACATTGAGATCCG-TTAC-TTATTTTAATCCGATCC-ACT
*
13641115 ACAAC-TCAGGGGA-AT-GAGATTTGATGTTGTAACTTC
63 GCAACTTCA-GGGATATAG-GATTTGA---TG---CTTC
* * * * * ** *
13641151 TCTCCATTCCACTGTAACCTCAAGGACATTAAGATCCGTTACTCATTTTGATTAGATCCACTGTA
1 ACTCCATTCCACTGTAACCTCAGGGACATTGAGATCCGTTACTTATTTTAATCCGATCCACTGCA
* * *
13641216 ACTTTAGGGATATAGG-TTCTGGTACTTC
66 ACTTCAGGGATATAGGATT-TGATGCTTC
* * ** ** *
13641244 ACTCCATTTCACTGTAACCTCAGGGTCATTGAGATCTTATTTGTTGTTTTAATCCGA-CCTACTG
1 ACTCCATTCCACTGTAACCTCAGGGACATTGAGATC-CGTTACTTATTTTAATCCGATCC-ACTG
*
13641308 CAAC-TCAGGGGTAT-GAGATTTGATGTTGTAACTTC
64 CAACTTCAGGGATATAG-GATTTGA---TG---CTTC
* * * * **
13641343 TCTTCATTCCACTATAACCTCAGGGACATTGAGATCCGTTACTTATTTTAATCTGATTTACTGCA
1 ACTCCATTCCACTGTAACCTCAGGGACATTGAGATCCGTTACTTATTTTAATCCGATCCACTGCA
* *
13641408 ACTTCAAGGATATAAGATCTTG-TGCTTC
66 ACTTCAGGGATATAGGAT-TTGATGCTTC
** * *
13641436 ACTTTATTCCACTGTAACCTTAGGGAAATTGA
1 ACTCCATTCCACTGTAACCTCAGGGACATTGA
13641468 AATCTGCTTC
Statistics
Matches: 465, Mismatches: 98, Indels: 88
0.71 0.15 0.14
Matches are distributed among these distances:
91 1 0.00
92 16 0.03
93 177 0.38
94 49 0.11
95 2 0.00
96 8 0.02
97 3 0.01
98 102 0.22
99 102 0.22
100 5 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (93 bp):
ACTCCATTCCACTGTAACCTCAGGGACATTGAGATCCGTTACTTATTTTAATCCGATCCACTGCA
ACTTCAGGGATATAGGATTTGATGCTTC
Found at i:13641050 original size:192 final size:192
Alignment explanation
Indices: 13640770--13641489 Score: 930
Period size: 192 Copynumber: 3.8 Consensus size: 192
13640760 GTAACTTAAC
* * * *
13640770 TCCATTCCACTATAACCTCAGGGACATTGAGATCCATTACTTATTTTAATCTGATCCACTGTAAC
1 TCCATTCCACTATAACCTCAGGGACATTAAGATCCGTTACTCATTTTAATCTGATCCACTGCAAC
* * *
13640835 TTCAGGGATATAGGATCTGATGCTTCACTCCATTCCATTGTAACCTCAAGGACATTGAGATTTGC
66 TTCAGGGATATAGGATTTGATGCTTCACTCCATTCCACTGTAACCTCAAGGACATTGAGATCTGC
* *
13640900 TTTGTTGTTTTAATCCGAACC-ACTACAACTCAAGGGTATGAGATTTGATGTTGTAACTTCTT
131 TTCGTTGTTTTAATCCG-ACCTACTACAACTCAGGGGTATGAGATTTGATGTTGTAACTTCTT
* * * * *
13640962 TCCATTCCATTGTAACCTCAGGGATATTAAGATCCGTTACTCATTTTGATCCGATCCACTGCAAC
1 TCCATTCCACTATAACCTCAGGGACATTAAGATCCGTTACTCATTTTAATCTGATCCACTGCAAC
* * * * *
13641027 TTCATGGATATAGGATTTGATGCTTCACTCTATTCCATTGTAACCTCAAAGATATTGAGATCTGC
66 TTCAGGGATATAGGATTTGATGCTTCACTCCATTCCACTGTAACCTCAAGGACATTGAGATCTGC
* *
13641092 TTCGTTG-TTTAATCCGACCTACTACAACTCAGGGGAATGAGATTTGATGTTGTAACTTCTC
131 TTCGTTGTTTTAATCCGACCTACTACAACTCAGGGGTATGAGATTTGATGTTGTAACTTCTT
* * * *
13641153 TCCATTCCACTGTAACCTCAAGGACATTAAGATCCGTTACTCATTTTGAT-TAGATCCACTGTAA
1 TCCATTCCACTATAACCTCAGGGACATTAAGATCCGTTACTCATTTTAATCT-GATCCACTGCAA
* * * * * *
13641217 CTTTAGGGATATAGG-TTCTGGTACTTCACTCCATTTCACTGTAACCTCAGGGTCATTGAGATCT
65 CTTCAGGGATATAGGATT-TGATGCTTCACTCCATTCCACTGTAACCTCAAGGACATTGAGATCT
** * *
13641281 TATTTGTTGTTTTAATCCGACCTACTGCAACTCAGGGGTATGAGATTTGATGTTGTAACTTCTCT
129 GCTTCGTTGTTTTAATCCGACCTACTACAACTCAGGGGTATGAGATTTGATGTTGTAACTTCT-T
* * **
13641346 T-CATTCCACTATAACCTCAGGGACATTGAGATCCGTTACTTATTTTAATCTGATTTACTGCAAC
1 TCCATTCCACTATAACCTCAGGGACATTAAGATCCGTTACTCATTTTAATCTGATCCACTGCAAC
* * ** * * * *
13641410 TTCAAGGATATAAGATCTTG-TGCTTCACTTTATTCCACTGTAACCTTAGGGAAATTGAAATCTG
66 TTCAGGGATATAGGAT-TTGATGCTTCACTCCATTCCACTGTAACCTCAAGGACATTGAGATCTG
13641474 CTTCGTTGTTTTAATC
130 CTTCGTTGTTTTAATC
13641490 TACTTCACTA
Statistics
Matches: 457, Mismatches: 63, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
190 5 0.01
191 161 0.35
192 285 0.62
193 5 0.01
194 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (192 bp):
TCCATTCCACTATAACCTCAGGGACATTAAGATCCGTTACTCATTTTAATCTGATCCACTGCAAC
TTCAGGGATATAGGATTTGATGCTTCACTCCATTCCACTGTAACCTCAAGGACATTGAGATCTGC
TTCGTTGTTTTAATCCGACCTACTACAACTCAGGGGTATGAGATTTGATGTTGTAACTTCTT
Found at i:13641436 original size:383 final size:384
Alignment explanation
Indices: 13640759--13641489 Score: 1042
Period size: 383 Copynumber: 1.9 Consensus size: 384
13640749 GATATAGTGA
* * *
13640759 TGTAACTTAACTCCATTCCACTATAACCTCAGGGACATTGAGATCCATTACTTATTTTAATCTGA
1 TGTAACTTAACTCCATTCCACTATAACCTCAAGGACATTAAGATCCATTACTCATTTTAATCTGA
* *
13640824 TCCACTGTAACTTCAGGGATATAGGATCTGATGCTTCACTCCATTCCATTGTAACCTCAAGGACA
66 TCCACTGTAACTTCAGGGATATAGGATCTGATACTTCACTCCATTCCACTGTAACCTCAAGGACA
*
13640889 TTGAGATTTGCTTTGTTGTTTTAATCCGAACCACTACAACTCAAGGGTATGAGATTTGATGTTGT
131 TTGAGATTTGATTTGTTGTTTTAATCCGAACCACTACAACTCAAGGGTATGAGATTTGATGTTGT
* * * *
13640954 AACTTCTTTCCATTCCATTGTAACCTCAGGGATATTAAGATCCGTTACTCATTTTGATCCGATCC
196 AACTTCTTTCCATTCCACTATAACCTCAGGGACATTAAGATCCGTTACTCATTTTAATCCGATCC
* * * *
13641019 ACTGCAACTTCATGGATATAGGATTTGATGCTTCACTCTATTCCATTGTAACCTCAAAGATATTG
261 ACTGCAACTTCAAGGATATAAGATTTGATGCTTCACTCTATTCCACTGTAACCTCAAAGAAATTG
*
13641084 AGATCTGCTTCGTTG-TTTAATCCGACCTACTACAACTCAGGGGAATGAGATTTGATGT
326 AAATCTGCTTCGTTGTTTTAATCCGACCTACTACAACTCAGGGGAATGAGATTTGATGT
** * * *
13641142 TGTAACTTCTCTCCATTCCACTGTAACCTCAAGGACATTAAGATCCGTTACTCATTTTGAT-TAG
1 TGTAACTTAACTCCATTCCACTATAACCTCAAGGACATTAAGATCCATTACTCATTTTAATCT-G
* * * * * *
13641206 ATCCACTGTAACTTTAGGGATATAGGTTCTGGTACTTCACTCCATTTCACTGTAACCTCAGGGTC
65 ATCCACTGTAACTTCAGGGATATAGGATCTGATACTTCACTCCATTCCACTGTAACCTCAAGGAC
* *
13641271 ATTGAGATCTT-ATTTGTTGTTTTAATCCG-ACCTACTGCAACTCAGGGGTATGAGATTTGATGT
130 ATTGAGAT-TTGATTTGTTGTTTTAATCCGAACC-ACTACAACTCAAGGGTATGAGATTTGATGT
* * *
13641334 TGTAACTTCTCTT-CATTCCACTATAACCTCAGGGACATTGAGATCCGTTACTTATTTTAATCTG
193 TGTAACTTCT-TTCCATTCCACTATAACCTCAGGGACATTAAGATCCGTTACTCATTTTAATCCG
** * * **
13641398 ATTTACTGCAACTTCAAGGATATAAGATCTTG-TGCTTCACTTTATTCCACTGTAACCTTAGGGA
257 ATCCACTGCAACTTCAAGGATATAAGAT-TTGATGCTTCACTCTATTCCACTGTAACCTCAAAGA
13641462 AATTGAAATCTGCTTCGTTGTTTTAATC
321 AATTGAAATCTGCTTCGTTGTTTTAATC
13641490 TACTTCACTA
Statistics
Matches: 305, Mismatches: 37, Indels: 11
0.86 0.10 0.03
Matches are distributed among these distances:
382 4 0.01
383 287 0.94
384 14 0.05
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (384 bp):
TGTAACTTAACTCCATTCCACTATAACCTCAAGGACATTAAGATCCATTACTCATTTTAATCTGA
TCCACTGTAACTTCAGGGATATAGGATCTGATACTTCACTCCATTCCACTGTAACCTCAAGGACA
TTGAGATTTGATTTGTTGTTTTAATCCGAACCACTACAACTCAAGGGTATGAGATTTGATGTTGT
AACTTCTTTCCATTCCACTATAACCTCAGGGACATTAAGATCCGTTACTCATTTTAATCCGATCC
ACTGCAACTTCAAGGATATAAGATTTGATGCTTCACTCTATTCCACTGTAACCTCAAAGAAATTG
AAATCTGCTTCGTTGTTTTAATCCGACCTACTACAACTCAGGGGAATGAGATTTGATGT
Found at i:13641515 original size:93 final size:93
Alignment explanation
Indices: 13641339--13641518 Score: 204
Period size: 93 Copynumber: 1.9 Consensus size: 93
13641329 GATGTTGTAA
* * * *
13641339 CTTCTCTTCATTCCACTATAACCTCAGGGACATTGAGATCCGTTACTTATTTTAATCTGATTTAC
1 CTTCACTTCATTCCACTATAACCTCAGGGAAATTGAAATCCGTTACTTATTTTAATCTGATTCAC
*
13641404 TGCAACTTCAAGGATATAAGATCTTGTG
66 TACAACTTCAAGGATATAAGATCTTGTG
* * * * *
13641432 CTTCACTTTATTCCACTGTAACCTTAGGGAAATTGAAATCTGCTT-CGTTGTTTTAATCT-ACTT
1 CTTCACTTCATTCCACTATAACCTCAGGGAAATTGAAATCCG-TTAC-TTATTTTAATCTGA-TT
**
13641495 CACTACAACTTTGAGG-TATAAGAT
63 CACTACAACTTCAAGGATATAAGAT
13641519 TCGTCGTTGC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
93 45 0.62
94 27 0.38
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (93 bp):
CTTCACTTCATTCCACTATAACCTCAGGGAAATTGAAATCCGTTACTTATTTTAATCTGATTCAC
TACAACTTCAAGGATATAAGATCTTGTG
Found at i:13641760 original size:49 final size:49
Alignment explanation
Indices: 13641691--13642019 Score: 363
Period size: 49 Copynumber: 6.7 Consensus size: 49
13641681 TCTCATCTTC
** * * *
13641691 AGGGTATAAGATTCACCGTTGTGGCTTCAATCTTTTCCTTCACATCTCT
1 AGGGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCCTCCACATCTCT
* * *
13641740 AAGGTATAAGGTTCGTCGTTGCGGCTTCAACCTTTCCCTCCACATCTCT
1 AGGGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCCTCCACATCTCT
* * * * *
13641789 AGGGTATAAGGTTTGTCGTTGCGGCTTCGACCTTTCCCTCCATATCTCT
1 AGGGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCCTCCACATCTCT
* * * * * *
13641838 AGGGTACAAGATTCATCATTGCGGCTTCAATCTCTCCCTCTATATCTCT
1 AGGGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCCTCCACATCTCT
* * *
13641887 AGGGTATAAGATTTG-CTGTTGCGGCTTTAATCTTTCCCTCCATATCTCT
1 AGGGTATAAGATTCGTC-GTTGCGGCTTCAATCTTTCCCTCCACATCTCT
* * * * * *
13641936 AGGGTACAAGATTTGCCATTGTGGCTTCAATCTTTCCCTTCACATCTCT
1 AGGGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCCTCCACATCTCT
* * *
13641985 AAGGTGTAAGATTCATCGTTGCGGCTTCAATCTTT
1 AGGGTATAAGATTCGTCGTTGCGGCTTCAATCTTT
13642020 TATTTCCTGT
Statistics
Matches: 236, Mismatches: 42, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
48 1 0.00
49 234 0.99
50 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (49 bp):
AGGGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCCTCCACATCTCT
Found at i:13641962 original size:147 final size:147
Alignment explanation
Indices: 13641691--13642017 Score: 406
Period size: 147 Copynumber: 2.2 Consensus size: 147
13641681 TCTCATCTTC
* * * * *
13641691 AGGGTATAAGATTCACCGTTGTGGCTTCAATCTTTTCCTTCACATCTCTAAGGTATAAGGTTCGT
1 AGGGTATAAGATTCATCGTTGCGGCTTCAATCTCTCCCTTCACATCTCTAAGGTATAAGATTCGT
* * * * *
13641756 CGTTGCGGCTTCAACCTTTCCCTCCACATCTCTAGGGTATAAGGTTTGTCGTTGCGGCTTCGACC
66 CGTTGCGGCTTCAACCTTTCCCTCCACATCTCTAGGGTACAAGATTTGCCATTGCGGCTTCAACC
*
13641821 TTTCCCTCCATATCTCT
131 TTTCCCTCCACATCTCT
* * * * *
13641838 AGGGTACAAGATTCATCATTGCGGCTTCAATCTCTCCC-TCTATATCTCTAGGGTATAAGATTTG
1 AGGGTATAAGATTCATCGTTGCGGCTTCAATCTCTCCCTTC-ACATCTCTAAGGTATAAGATTCG
* * * *
13641902 -CTGTTGCGGCTTTAATCTTTCCCTCCATATCTCTAGGGTACAAGATTTGCCATTGTGGCTTCAA
65 TC-GTTGCGGCTTCAACCTTTCCCTCCACATCTCTAGGGTACAAGATTTGCCATTGCGGCTTCAA
* *
13641966 TCTTTCCCTTCACATCTCT
129 CCTTTCCCTCCACATCTCT
* *
13641985 AAGGTGTAAGATTCATCGTTGCGGCTTCAATCT
1 AGGGTATAAGATTCATCGTTGCGGCTTCAATCT
13642018 TTTATTTCCT
Statistics
Matches: 152, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
146 3 0.02
147 149 0.98
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (147 bp):
AGGGTATAAGATTCATCGTTGCGGCTTCAATCTCTCCCTTCACATCTCTAAGGTATAAGATTCGT
CGTTGCGGCTTCAACCTTTCCCTCCACATCTCTAGGGTACAAGATTTGCCATTGCGGCTTCAACC
TTTCCCTCCACATCTCT
Found at i:13642674 original size:112 final size:112
Alignment explanation
Indices: 13642477--13642693 Score: 290
Period size: 112 Copynumber: 1.9 Consensus size: 112
13642467 TATCGTTAGA
** * * *
13642477 CCACTAACCGCTATTTCAATGCGAAAATGCTTGAACAGGATTGTAAGGTAGAAAAAATTAAAATT
1 CCACTAACCGCTATTTCAATGAAAAAATGCTTGAACAGGATCGCAAGGCAGAAAAAATTAAAATT
* *
13642542 TATTGGAGGTAAAACTCGCATGAATGAAAAGATTAAAAATCATTGGT
66 TATTGGAGGCAAAACTCGCATGAATAAAAAGATTAAAAATCATTGGT
* * * * * * *
13642589 CCACTAACCGTTATTTCGATGAAAAAATGCTTGAACAGGGTCGCAAGGCGGATAAAATTGAATTT
1 CCACTAACCGCTATTTCAATGAAAAAATGCTTGAACAGGATCGCAAGGCAGAAAAAATTAAAATT
* *
13642654 TATTGGAGGCAAAGCTCGCATGACTAAAAAGATTAAAAAT
66 TATTGGAGGCAAAACTCGCATGAATAAAAAGATTAAAAAT
13642694 GTCCCAAATT
Statistics
Matches: 89, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
112 89 1.00
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.26
Consensus pattern (112 bp):
CCACTAACCGCTATTTCAATGAAAAAATGCTTGAACAGGATCGCAAGGCAGAAAAAATTAAAATT
TATTGGAGGCAAAACTCGCATGAATAAAAAGATTAAAAATCATTGGT
Found at i:13643916 original size:14 final size:14
Alignment explanation
Indices: 13643897--13643927 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
13643887 GAGATGCATC
13643897 ACTATATACAACAA
1 ACTATATACAACAA
13643911 ACTATATACAACAA
1 ACTATATACAACAA
13643925 ACT
1 ACT
13643928 CTTTACCCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (14 bp):
ACTATATACAACAA
Found at i:13649406 original size:8 final size:8
Alignment explanation
Indices: 13649383--13649422 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
13649373 ACCTCTCCTT
*
13649383 TTTTCTTT
1 TTTTCTTG
*
13649391 TCTTTCTTA
1 T-TTTCTTG
13649400 TTTTCTTG
1 TTTTCTTG
13649408 TTTTCTTG
1 TTTTCTTG
13649416 TTTTCTT
1 TTTTCTT
13649423 TTTCTTTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.78
Consensus pattern (8 bp):
TTTTCTTG
Found at i:13649414 original size:16 final size:17
Alignment explanation
Indices: 13649383--13649432 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
13649373 ACCTCTCCTT
*
13649383 TTTTCTTTTCTTTCTTA
1 TTTTCTTGTCTTTCTTA
*
13649400 TTTTCTTGT-TTTCTTG
1 TTTTCTTGTCTTTCTTA
*
13649416 TTTTCTTTTTCTTTCTT
1 TTTTC-TTGTCTTTCTT
13649433 TTCTTTCCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 11 0.39
17 11 0.39
18 6 0.21
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.78
Consensus pattern (17 bp):
TTTTCTTGTCTTTCTTA
Found at i:13650867 original size:22 final size:22
Alignment explanation
Indices: 13650840--13650885 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
13650830 GTAATTTAGG
13650840 TTTTAGGGT-TTTTTGAA-TGGGT
1 TTTTA-GGTATTTTT-AATTGGGT
13650862 TTTTAGGTATTTTTAATTGGGT
1 TTTTAGGTATTTTTAATTGGGT
13650884 TT
1 TT
13650886 GTAAATGGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.15, C:0.00, G:0.26, T:0.59
Consensus pattern (22 bp):
TTTTAGGTATTTTTAATTGGGT
Found at i:13650932 original size:13 final size:14
Alignment explanation
Indices: 13650916--13650945 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
13650906 ACTATTTTTA
13650916 TTTAATTTTT-TGT
1 TTTAATTTTTGTGT
13650929 TTTAATTTTTGTGT
1 TTTAATTTTTGTGT
13650943 TTT
1 TTT
13650946 GTTTTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.13, C:0.00, G:0.10, T:0.77
Consensus pattern (14 bp):
TTTAATTTTTGTGT
Found at i:13651871 original size:15 final size:15
Alignment explanation
Indices: 13651851--13651891 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
13651841 AGTTGTGGCT
13651851 TTAAATTGTGAAAAC
1 TTAAATTGTGAAAAC
13651866 TTAAATTGT---AAC
1 TTAAATTGTGAAAAC
13651878 TTCAAATTGTGAAA
1 TT-AAATTGTGAAA
13651892 TTAAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
12 5 0.23
13 7 0.32
15 9 0.41
16 1 0.05
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (15 bp):
TTAAATTGTGAAAAC
Found at i:13663067 original size:23 final size:23
Alignment explanation
Indices: 13663041--13663144 Score: 129
Period size: 23 Copynumber: 4.4 Consensus size: 23
13663031 CCAAAGCACT
13663041 AACAGAGAGCACACACAGTGCTA
1 AACAGAGAGCACACACAGTGCTA
* *
13663064 AACAGAGAGCACAAAAAGTGCTA
1 AACAGAGAGCACACACAGTGCTA
*
13663087 ATCAGAGAGCACACACAGTGCTAA
1 AACAGAGAGCACACACAGTGCT-A
* *
13663111 TAATAGAGAGCACGAGAC-GTGCTA
1 -AACAGAGAGCAC-ACACAGTGCTA
13663135 AACAGAGAGC
1 AACAGAGAGC
13663145 GCGCTAGTGT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
23 49 0.71
24 2 0.03
25 15 0.22
26 3 0.04
ACGTcount: A:0.44, C:0.21, G:0.24, T:0.11
Consensus pattern (23 bp):
AACAGAGAGCACACACAGTGCTA
Found at i:13663097 original size:46 final size:47
Alignment explanation
Indices: 13663039--13663144 Score: 144
Period size: 48 Copynumber: 2.3 Consensus size: 47
13663029 TACCAAAGCA
13663039 CTAACAGAGAGCACACACAGTGCT-A-AACAGAGAGCACAAAAAGTG
1 CTAACAGAGAGCACACACAGTGCTAATAACAGAGAGCACAAAAAGTG
* * * *
13663084 CTAATCAGAGAGCACACACAGTGCTAATAATAGAGAGCACGAGACGTG
1 CTAA-CAGAGAGCACACACAGTGCTAATAACAGAGAGCACAAAAAGTG
13663132 CTAAACAGAGAGC
1 CT-AACAGAGAGC
13663145 GCGCTAGTGT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
45 4 0.08
46 20 0.38
47 1 0.02
48 26 0.49
49 2 0.04
ACGTcount: A:0.43, C:0.22, G:0.24, T:0.11
Consensus pattern (47 bp):
CTAACAGAGAGCACACACAGTGCTAATAACAGAGAGCACAAAAAGTG
Found at i:13664802 original size:29 final size:29
Alignment explanation
Indices: 13664759--13664816 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
13664749 ATAGAAAACC
13664759 TTCCTACAACCACTTGAAAATGTAGGGGT
1 TTCCTACAACCACTTGAAAATGTAGGGGT
* *
13664788 TTCCTACAACTACTTGAAAATGTGGGGGT
1 TTCCTACAACCACTTGAAAATGTAGGGGT
13664817 GTCTTGCTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (29 bp):
TTCCTACAACCACTTGAAAATGTAGGGGT
Found at i:13670859 original size:259 final size:259
Alignment explanation
Indices: 13670400--13670918 Score: 975
Period size: 259 Copynumber: 2.0 Consensus size: 259
13670390 CCACAAAACT
13670400 TTCCCAAACATCATAAACCAGTCCTAAGCACGTGGCCTATATTCTCAGACTCGGGGTCCATTCAA
1 TTCCCAAACATCATAAACCAGTCCTAAGCACGTGGCCTATATTCTCAGACTCGGGGTCCATTCAA
* *
13670465 TTTTTCCAAGTTTTTCCATGTATTTGGAGGATCCTTATATGGGAGTACTCTAAGAAAAATGAAGA
66 TTTTTCCAAGTTTTTCCATGTATTTGGAGGATCCTTACATAGGAGTACTCTAAGAAAAATGAAGA
* *
13670530 GTCGGAGCAACATAAATCCTGACTATTCCACCCTTCCCTCTTTCTCCAACTCTTCATTCATTTTC
131 GTCAGAGCAACATAAATCCCGACTATTCCACCCTTCCCTCTTTCTCCAACTCTTCATTCATTTTC
13670595 ATCTGTCCCTACTCGATTCTCTTCATGAGAACCCAGCCAAGTAAAAACAAATACACAGATGACA
196 ATCTGTCCCTACTCGATTCTCTTCATGAGAACCCAGCCAAGTAAAAACAAATACACAGATGACA
13670659 TTCCCAAACATCATAAACCAGTCCTAAGCACGTGGCCTATATTCTCAGACTCGGGGTCCATTCAA
1 TTCCCAAACATCATAAACCAGTCCTAAGCACGTGGCCTATATTCTCAGACTCGGGGTCCATTCAA
13670724 TTTTTCCAAGTTTTTCCATGTATTTGGAGGATCCTTACATAGGAGTACTCTAAGAAAAATGAAGA
66 TTTTTCCAAGTTTTTCCATGTATTTGGAGGATCCTTACATAGGAGTACTCTAAGAAAAATGAAGA
**
13670789 GTCAGAGCAACATAAATCCCGACTATTCTGCCCTTCCCTCTTTCTCCAACTCTTCATTCATTTTC
131 GTCAGAGCAACATAAATCCCGACTATTCCACCCTTCCCTCTTTCTCCAACTCTTCATTCATTTTC
*
13670854 ATCTGTCCCTTCTCGATTCTCTTCATGAGAACCCAGCCAAGTAAAAACAAATACACAGATGACA
196 ATCTGTCCCTACTCGATTCTCTTCATGAGAACCCAGCCAAGTAAAAACAAATACACAGATGACA
13670918 T
1 T
13670919 GTATATCAAG
Statistics
Matches: 253, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
259 253 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (259 bp):
TTCCCAAACATCATAAACCAGTCCTAAGCACGTGGCCTATATTCTCAGACTCGGGGTCCATTCAA
TTTTTCCAAGTTTTTCCATGTATTTGGAGGATCCTTACATAGGAGTACTCTAAGAAAAATGAAGA
GTCAGAGCAACATAAATCCCGACTATTCCACCCTTCCCTCTTTCTCCAACTCTTCATTCATTTTC
ATCTGTCCCTACTCGATTCTCTTCATGAGAACCCAGCCAAGTAAAAACAAATACACAGATGACA
Found at i:13673081 original size:23 final size:23
Alignment explanation
Indices: 13673051--13673098 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
13673041 TGCCTAGCCT
13673051 AATATAACAAATGTAAATATATA
1 AATATAACAAATGTAAATATATA
13673074 AATATAACAAATGTAAATATATA
1 AATATAACAAATGTAAATATATA
13673097 AA
1 AA
13673099 CATCAAGTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.29
Consensus pattern (23 bp):
AATATAACAAATGTAAATATATA
Found at i:13680196 original size:26 final size:27
Alignment explanation
Indices: 13680167--13680235 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
13680157 AATTTTAAGC
* *
13680167 TTAATTTTATGAAA-GTTAGTTAATGG
1 TTAATATTATGAAATGTTAATTAATGG
* *
13680193 TTAATATTATTAAATTTTAATTAATGG
1 TTAATATTATGAAATGTTAATTAATGG
*
13680220 TTAATATGATGTAAAT
1 TTAATATTATG-AAAT
13680236 AGAATATTAG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 12 0.34
27 19 0.54
28 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (27 bp):
TTAATATTATGAAATGTTAATTAATGG
Found at i:13682195 original size:17 final size:19
Alignment explanation
Indices: 13682173--13682219 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
13682163 ATTAATCATT
13682173 ATCATATTTA-AAAT-AAA
1 ATCATATTTATAAATAAAA
*
13682190 ATCATATTTATATATAAAA
1 ATCATATTTATAAATAAAA
*
13682209 ATTATATTTAT
1 ATCATATTTAT
13682220 TTAATTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 10 0.38
18 3 0.12
19 13 0.50
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (19 bp):
ATCATATTTATAAATAAAA
Found at i:13682425 original size:16 final size:17
Alignment explanation
Indices: 13682375--13682432 Score: 75
Period size: 17 Copynumber: 3.5 Consensus size: 17
13682365 GGACCCATTC
13682375 AAAATAAACAAAATCAA-
1 AAAATAAACAAAAT-AAT
*
13682392 AAAATAAACAAAAGAAT
1 AAAATAAACAAAATAAT
13682409 AAAATAAA-AAAATAAT
1 AAAATAAACAAAATAAT
*
13682425 AAATTAAA
1 AAAATAAA
13682433 TTAAAATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
16 16 0.43
17 21 0.57
ACGTcount: A:0.78, C:0.05, G:0.02, T:0.16
Consensus pattern (17 bp):
AAAATAAACAAAATAAT
Found at i:13689832 original size:19 final size:20
Alignment explanation
Indices: 13689810--13689850 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
13689800 ATAACGAAAA
*
13689810 AAATAAAT-AATAATTAAGC
1 AAATAAATCAAAAATTAAGC
13689829 AAATAAATGCAAAAATTAAGC
1 AAATAAAT-CAAAAATTAAGC
13689850 A
1 A
13689851 TGAGATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
21 11 0.58
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (20 bp):
AAATAAATCAAAAATTAAGC
Found at i:13690029 original size:30 final size:29
Alignment explanation
Indices: 13689979--13690229 Score: 185
Period size: 29 Copynumber: 8.6 Consensus size: 29
13689969 TAAAGTTTCA
* * *
13689979 GAGAATTTA-GGGTTAAAATGTAATTTTA
1 GAGAAGTTAGGGGTAAAAATGTAATTTTT
*
13690007 GAAAAGTGTAGGGGTAAAAATGTAA-TTTT
1 GAGAAGT-TAGGGGTAAAAATGTAATTTTT
* * ** *
13690036 GGGAAAGTTCA-AGGTAAAAACATGATTTTT
1 GAG-AAGTT-AGGGGTAAAAATGTAATTTTT
*
13690066 GAGAAGTTCA-GGGCAAAAATGTAATTTTT
1 GAGAAGTT-AGGGGTAAAAATGTAATTTTT
* *
13690095 GATAAGTTTGGGGGTAAAAATGTAA-TTTT
1 GAGAAG-TTAGGGGTAAAAATGTAATTTTT
* * *
13690124 -AGAAGTTTGAGAGTAAAATTGTAATTTTT
1 GAGAAGTTAG-GGGTAAAAATGTAATTTTT
* *
13690153 GAGAAGTTTGGGGGT-AAAATGTGATTTTT
1 GAGAAG-TTAGGGGTAAAAATGTAATTTTT
* *
13690182 GAGAAGTTTGGGGGTAAAAATGTGATTTTT
1 GAGAAG-TTAGGGGTAAAAATGTAATTTTT
*
13690212 G-GAAGCTTGGGGGTAAAA
1 GAGAAG-TTAGGGGTAAAA
13690230 TGAGATTTTT
Statistics
Matches: 183, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
27 3 0.02
28 21 0.11
29 94 0.51
30 62 0.34
31 3 0.02
ACGTcount: A:0.36, C:0.02, G:0.28, T:0.34
Consensus pattern (29 bp):
GAGAAGTTAGGGGTAAAAATGTAATTTTT
Found at i:13690051 original size:29 final size:29
Alignment explanation
Indices: 13689987--13690123 Score: 102
Period size: 30 Copynumber: 4.7 Consensus size: 29
13689977 CAGAGAATTT
* * *
13689987 AGGGTTAAAATGTAATTTTAGAAAAGTGT-
1 AGGGTAAAAATGTAATTTTGGGAAAGT-TC
13690016 AGGGGTAAAAATGTAATTTTGGGAAAGTTC
1 A-GGGTAAAAATGTAATTTTGGGAAAGTTC
* * *
13690046 AAGGTAAAAACATG-ATTTTTGAG-AAGTTC
1 AGGGT-AAAA-ATGTAATTTTGGGAAAGTTC
* * *
13690075 AGGGCAAAAATGTAATTTT-TGATAAGTTTG
1 AGGGTAAAAATGTAATTTTGGGA-AAG-TTC
*
13690105 GGGGTAAAAATGTAATTTT
1 AGGGTAAAAATGTAATTTT
13690124 AGAAGTTTGA
Statistics
Matches: 87, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
27 4 0.05
28 9 0.10
29 17 0.20
30 54 0.62
31 3 0.03
ACGTcount: A:0.39, C:0.03, G:0.25, T:0.34
Consensus pattern (29 bp):
AGGGTAAAAATGTAATTTTGGGAAAGTTC
Found at i:13690070 original size:87 final size:88
Alignment explanation
Indices: 13689979--13690215 Score: 264
Period size: 87 Copynumber: 2.7 Consensus size: 88
13689969 TAAAGTTTCA
* * * *
13689979 GAGAA-TTTAGGGTTAAAATGTAATTTTAGAAAAGTGTAGGGGTAAAAATGTAATTTTGGGAAAG
1 GAGAAGTTTAGGGCTAAAATGTAATTTTTGAAAAGTTTGGGGGTAAAAATGTAATTTT-GGAAAG
*
13690043 TTCAAG-GTAAAAACATGATTTTT
65 TTCAAGAGTAAAAACATAATTTTT
* * * *
13690066 GAGAAGTTCAGGGCAAAAATGTAATTTTTGATAAGTTTGGGGGTAAAAATGTAATTTTAG-AAGT
1 GAGAAGTTTAGGGCTAAAATGTAATTTTTGAAAAGTTTGGGGGTAAAAATGTAATTTTGGAAAGT
** ***
13690130 TTGAGAGTAAAATTGTAATTTTT
66 TCAAGAGTAAAAACATAATTTTT
* * * * *
13690153 GAGAAGTTTGGGGGTAAAATGTGATTTTTGAGAAGTTTGGGGGTAAAAATGTGATTTTTGGAA
1 GAGAAGTTTAGGGCTAAAATGTAATTTTTGAAAAGTTTGGGGGTAAAAATGT-AATTTTGGAA
13690216 GCTTGGGGGT
Statistics
Matches: 124, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
86 7 0.06
87 65 0.52
88 51 0.41
89 1 0.01
ACGTcount: A:0.36, C:0.02, G:0.27, T:0.35
Consensus pattern (88 bp):
GAGAAGTTTAGGGCTAAAATGTAATTTTTGAAAAGTTTGGGGGTAAAAATGTAATTTTGGAAAGT
TCAAGAGTAAAAACATAATTTTT
Found at i:13690180 original size:29 final size:29
Alignment explanation
Indices: 13690058--13690239 Score: 208
Period size: 29 Copynumber: 6.3 Consensus size: 29
13690048 GGTAAAAACA
** **
13690058 TGATTTTTGAGAAGTTCAGGGCAAAAATG
1 TGATTTTTGAGAAGTTTGGGGGTAAAATG
* *
13690087 TAATTTTTGATAAGTTTGGGGGTAAAAATG
1 TGATTTTTGAGAAGTTTGGGGGT-AAAATG
* * *
13690117 T-AATTTT-AGAAGTTTGAGAGTAAAATTG
1 TGATTTTTGAGAAGTTTGGGGGTAAAA-TG
*
13690145 TAATTTTTGAGAAGTTTGGGGGTAAAATG
1 TGATTTTTGAGAAGTTTGGGGGTAAAATG
13690174 TGATTTTTGAGAAGTTTGGGGGTAAAAATG
1 TGATTTTTGAGAAGTTTGGGGGT-AAAATG
*
13690204 TGATTTTTG-GAAGCTTGGGGGTAAAATG
1 TGATTTTTGAGAAGTTTGGGGGTAAAATG
*
13690232 AGATTTTT
1 TGATTTTT
13690240 AAAGAAAATA
Statistics
Matches: 132, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
27 4 0.03
28 27 0.20
29 63 0.48
30 38 0.29
ACGTcount: A:0.32, C:0.02, G:0.29, T:0.38
Consensus pattern (29 bp):
TGATTTTTGAGAAGTTTGGGGGTAAAATG
Found at i:13695516 original size:21 final size:21
Alignment explanation
Indices: 13695487--13695527 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
13695477 ATAAAAAATT
13695487 CAAAAAATTAGTAT-CAAGTA
1 CAAAAAATTAGTATACAAGTA
*
13695507 CAAATAAATTATTATACAAGT
1 CAAA-AAATTAGTATACAAGT
13695528 TATTTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.54, C:0.10, G:0.07, T:0.29
Consensus pattern (21 bp):
CAAAAAATTAGTATACAAGTA
Found at i:13695977 original size:7 final size:6
Alignment explanation
Indices: 13695934--13695976 Score: 59
Period size: 6 Copynumber: 6.8 Consensus size: 6
13695924 ATTTGAATAT
*
13695934 ATTTAA ATTTAA ATTTAA ATTTAA ATTTTAA AATTATA ATTTA
1 ATTTAA ATTTAA ATTTAA ATTTAA A-TTTAA ATTTA-A ATTTA
13695977 TTATCTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
6 22 0.67
7 11 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
ATTTAA
Found at i:13721938 original size:12 final size:12
Alignment explanation
Indices: 13721921--13721947 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
13721911 ACCTATGTGG
13721921 GAATTTAGGTAT
1 GAATTTAGGTAT
13721933 GAATTTAGGTAT
1 GAATTTAGGTAT
13721945 GAA
1 GAA
13721948 CCAAATTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (12 bp):
GAATTTAGGTAT
Found at i:13723460 original size:23 final size:23
Alignment explanation
Indices: 13723432--13723484 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
13723422 TCTTATGTCA
*
13723432 TCTCTATTAAGAAGTTTTCATCT
1 TCTCTACTAAGAAGTTTTCATCT
13723455 TCTCTACTAAGAAGTTTTCATCT
1 TCTCTACTAAGAAGTTTTCATCT
13723478 TCTCTAC
1 TCTCTAC
13723485 ATAAACAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.08, T:0.45
Consensus pattern (23 bp):
TCTCTACTAAGAAGTTTTCATCT
Found at i:13725757 original size:23 final size:23
Alignment explanation
Indices: 13725731--13725804 Score: 98
Period size: 23 Copynumber: 3.2 Consensus size: 23
13725721 AGAAACGTTT
13725731 CACAAGGCAAAGGAAAAGCGTGC
1 CACAAGGCAAAGGAAAAGCGTGC
*
13725754 CACAAGGCAGAA-GAAAAGCGTGT
1 CACAAGGCA-AAGGAAAAGCGTGC
*
13725777 TACAAGG-AAGAGGAAAAGCGTGC
1 CACAAGGCAA-AGGAAAAGCGTGC
13725800 CACAA
1 CACAA
13725805 AGACAAATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
21 1 0.02
22 2 0.05
23 39 0.89
24 2 0.05
ACGTcount: A:0.45, C:0.19, G:0.30, T:0.07
Consensus pattern (23 bp):
CACAAGGCAAAGGAAAAGCGTGC
Found at i:13725850 original size:16 final size:17
Alignment explanation
Indices: 13725809--13725852 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
13725799 CCACAAAGAC
13725809 AAATAAAAACTAGAAAA
1 AAATAAAAACTAGAAAA
* *
13725826 AAATCAAAA-TATAAAA
1 AAATAAAAACTAGAAAA
13725842 AAATAAAAACT
1 AAATAAAAACT
13725853 GAATATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.75, C:0.07, G:0.02, T:0.16
Consensus pattern (17 bp):
AAATAAAAACTAGAAAA
Found at i:13732014 original size:14 final size:14
Alignment explanation
Indices: 13731995--13732033 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
13731985 CCTAATGTAT
13731995 ATAAAATATTAATA
1 ATAAAATATTAATA
*
13732009 ATAAAATATTCATA
1 ATAAAATATTAATA
*
13732023 ATAAAAAATTA
1 ATAAAATATTA
13732034 TTTTTATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAAAATATTAATA
Found at i:13736137 original size:41 final size:41
Alignment explanation
Indices: 13736074--13736260 Score: 252
Period size: 41 Copynumber: 4.5 Consensus size: 41
13736064 ACTTGATGTA
*
13736074 TAAATGGAAGACTCATGTCTCGAGATGAGCATGAGATTATAT
1 TAAA-GGAAGACTCATGACTCGAGATGAGCATGAGATTATAT
* *
13736116 TAAAGGAAGACTCGTGACTCGAAATGAGCATGAGATTATAT
1 TAAAGGAAGACTCATGACTCGAGATGAGCATGAGATTATAT
* * *
13736157 TAATA-GAAGACTCATGTCTCGGGGTGAGCATGAGATTATAT
1 TAA-AGGAAGACTCATGACTCGAGATGAGCATGAGATTATAT
*
13736198 T-AAGAGAAGACTCATGACTCGGGATGAGCATGAGATTATATT
1 TAAAG-GAAGACTCATGACTCGAGATGAGCATGAGATTATA-T
*
13736240 TAAAGGAAGACTTATGACTCG
1 TAAAGGAAGACTCATGACTCG
13736261 GTAGAGCATA
Statistics
Matches: 129, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 102 0.79
42 22 0.17
43 3 0.02
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (41 bp):
TAAAGGAAGACTCATGACTCGAGATGAGCATGAGATTATAT
Found at i:13736289 original size:82 final size:82
Alignment explanation
Indices: 13736080--13736289 Score: 223
Period size: 82 Copynumber: 2.6 Consensus size: 82
13736070 TGTATAAATG
* * * * *
13736080 GAAGACTCATGTCTCGAGATGAGCATGAGATTATATT-AAAGGAAGACTCGTGACTCGAAATGAG
1 GAAGACTCATGACTCG-GGTGAGCATAAAATTATATTAAAAGGAAGACTCATGACTCGAAATGAG
13736144 CATGAGATTATATTAATA
65 CATGAGATTATATTAATA
* * * * **
13736162 GAAGACTCATGTCTCGGGGTGAGCATGAGATTATATTAAGA-GAAGACTCATGACTCGGGATGAG
1 GAAGACTCATGACTC-GGGTGAGCATAAAATTATATTAAAAGGAAGACTCATGACTCGAAATGAG
13736226 CATGAGATTATATTTAA-A
65 CATGAGATTATA-TTAATA
* *
13736244 GGAAGACTTATGACTC-GGTAGAGCATAAAATTGT-TTAAAAGGAAGA
1 -GAAGACTCATGACTCGGGT-GAGCATAAAATTATATTAAAAGGAAGA
13736290 TCTACGACTC
Statistics
Matches: 111, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
81 8 0.07
82 83 0.75
83 20 0.18
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.26
Consensus pattern (82 bp):
GAAGACTCATGACTCGGGTGAGCATAAAATTATATTAAAAGGAAGACTCATGACTCGAAATGAGC
ATGAGATTATATTAATA
Found at i:13736301 original size:123 final size:123
Alignment explanation
Indices: 13736080--13736301 Score: 288
Period size: 123 Copynumber: 1.8 Consensus size: 123
13736070 TGTATAAATG
* *
13736080 GAAGACTCATGTCTCGAGATGAGCATGAGATTATATTAAAGGAAGACTCGTGACTCGAAATGAGC
1 GAAGACTCATGACTCGAGATGAGCATGAGATTATATTAAAGGAAGACTCATGACTCGAAATGAGC
* * * * *
13736145 ATGAGATTATATTAATAGAAGACTCATGTCTCGGGGTGAGCATGAGATTATATTAAGA
66 ATAAAATTATATTAAAAGAAGACTCACGACTCGGGGTGAGCATGAGATTATATTAAGA
* * **
13736203 GAAGACTCATGACTCGGGATGAGCATGAGATTATATTTAAAGGAAGACTTATGACTCGGTA-GAG
1 GAAGACTCATGACTCGAGATGAGCATGAGATTATA-TTAAAGGAAGACTCATGACTCGAAATGAG
*
13736267 CATAAAATTGT-TTAAAAGGAAGA-TCTACGACTCGG
65 CATAAAATTATATTAAAA-GAAGACTC-ACGACTCGG
13736302 TTGTTAAATG
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
122 7 0.08
123 56 0.67
124 21 0.25
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (123 bp):
GAAGACTCATGACTCGAGATGAGCATGAGATTATATTAAAGGAAGACTCATGACTCGAAATGAGC
ATAAAATTATATTAAAAGAAGACTCACGACTCGGGGTGAGCATGAGATTATATTAAGA
Found at i:13763385 original size:37 final size:37
Alignment explanation
Indices: 13763134--13763394 Score: 360
Period size: 37 Copynumber: 7.1 Consensus size: 37
13763124 GCTTGATAAT
* * ** *
13763134 ATACAACGGCATAAAGCCTGCTAGGCACTGAGCCTGA
1 ATACACCGGCACAAAGCCTGCTAGGCACACAGCCCGA
* * *
13763171 ATACACCGGCACGAAGCCTGCTAGGCACATAGCTCGA
1 ATACACCGGCACAAAGCCTGCTAGGCACACAGCCCGA
*
13763208 ATACACCGGCACAAAGCCTGCTAGGCACATAGCCCGA
1 ATACACCGGCACAAAGCCTGCTAGGCACACAGCCCGA
* * *
13763245 ATACACCAGCACAAAACCTGCTAGGCACATAGCCCGA
1 ATACACCGGCACAAAGCCTGCTAGGCACACAGCCCGA
* *
13763282 ATACACCGACACAAAGCCTACTAGGCACACAGCCCGA
1 ATACACCGGCACAAAGCCTGCTAGGCACACAGCCCGA
* *
13763319 ATACACCGGCACGAAGCCTGCTAGTCACACAGCCCGA
1 ATACACCGGCACAAAGCCTGCTAGGCACACAGCCCGA
* *
13763356 ATACACCGGCACGAAGCCTGCTAGGCACACAGCCTGA
1 ATACACCGGCACAAAGCCTGCTAGGCACACAGCCCGA
13763393 AT
1 AT
13763395 TTGTAGATGC
Statistics
Matches: 202, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 202 1.00
ACGTcount: A:0.33, C:0.34, G:0.21, T:0.12
Consensus pattern (37 bp):
ATACACCGGCACAAAGCCTGCTAGGCACACAGCCCGA
Found at i:13767126 original size:14 final size:14
Alignment explanation
Indices: 13767107--13767140 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
13767097 CCTAATGTAT
13767107 ATAAAATATTAAGA
1 ATAAAATATTAAGA
* *
13767121 ATAAAATATTCATA
1 ATAAAATATTAAGA
13767135 ATAAAA
1 ATAAAA
13767141 ATTTATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (14 bp):
ATAAAATATTAAGA
Found at i:13767402 original size:16 final size:16
Alignment explanation
Indices: 13767381--13767411 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13767371 AGAGAAACAT
13767381 TGGAGAAAGAAAGCAC
1 TGGAGAAAGAAAGCAC
*
13767397 TGGAGAAAGGAAGCA
1 TGGAGAAAGAAAGCA
13767412 GGAAACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.35, T:0.06
Consensus pattern (16 bp):
TGGAGAAAGAAAGCAC
Found at i:13787174 original size:2 final size:2
Alignment explanation
Indices: 13787135--13787166 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
13787125 TCCCTCAGTC
13787135 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13787167 GCATATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13792517 original size:21 final size:21
Alignment explanation
Indices: 13792478--13792524 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
13792468 TTTTTAGTAC
* *
13792478 CGGTAAAAGCATGATTTGTTT
1 CGGTAAAAGCATGACTTGTAT
* *
13792499 CGGTAAAAGCTTTACTTGTAT
1 CGGTAAAAGCATGACTTGTAT
13792520 CGGTA
1 CGGTA
13792525 GAACTATCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (21 bp):
CGGTAAAAGCATGACTTGTAT
Done.