Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 64 of 126
Found at i:18687979 original size:26 final size:25
Alignment explanation
Indices: 18687933--18687999 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 25
18687923 TTCTTGAAAT
* * *
18687933 TTTACTGGGGCAAAATTGTCAAAAC
1 TTTACTAGGGTAAAATCGTCAAAAC
*
18687958 TTTACTAAGGGTAAAATCGTCAAAAT
1 TTTACT-AGGGTAAAATCGTCAAAAC
* *
18687984 TTTGCTGGGGTAAAAT
1 TTTACTAGGGTAAAAT
18688000 AAGATGATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 15 0.43
26 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (25 bp):
TTTACTAGGGTAAAATCGTCAAAAC
Found at i:18693479 original size:18 final size:18
Alignment explanation
Indices: 18693447--18693498 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
18693437 CTGGGATGAG
18693447 AATAAATTT--TTAATTA
1 AATAAATTTAATTAATTA
*
18693463 AATAAATTTAATTAATTG
1 AATAAATTTAATTAATTA
*
18693481 AA-AATTTTAAATTAATTA
1 AATAAATTT-AATTAATTA
18693499 CAACTGAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 9 0.30
17 5 0.17
18 16 0.53
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
AATAAATTTAATTAATTA
Found at i:18696087 original size:30 final size:30
Alignment explanation
Indices: 18696043--18696103 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 30
18696033 AAATTTTAAA
*
18696043 TTAATAAAAATAAAAT-TATATTTTAATTTT
1 TTAATAAAAATAAAATAT-TAATTTAATTTT
18696073 TTAA-AAATAATAAAATATTAATTTAATTTT
1 TTAATAAA-AATAAAATATTAATTTAATTTT
18696103 T
1 T
18696104 ATCCCTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 3 0.11
30 24 0.86
31 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (30 bp):
TTAATAAAAATAAAATATTAATTTAATTTT
Found at i:18696090 original size:27 final size:27
Alignment explanation
Indices: 18696030--18696091 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
18696020 TTAATTTTTT
18696030 TAAAA-ATTTTAAATTAATAAAAATAA
1 TAAAATATTTTAAATTAATAAAAATAA
* * **
18696056 -AATTATATTTTAATTTTTTAAAAATAA
1 TAA-AATATTTTAAATTAATAAAAATAA
18696083 TAAAATATT
1 TAAAATATT
18696092 AATTTAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
25 2 0.07
26 1 0.04
27 23 0.82
28 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
TAAAATATTTTAAATTAATAAAAATAA
Found at i:18698825 original size:21 final size:22
Alignment explanation
Indices: 18698787--18698830 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
18698777 CACTATGTCG
* * *
18698787 GGCCTATGTCGTGCCATG-CAA
1 GGCCTATGGCGCGACATGACAA
18698808 GGCCTATGGCGCGACATGACAA
1 GGCCTATGGCGCGACATGACAA
18698830 G
1 G
18698831 CAAATTGTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.23, C:0.27, G:0.32, T:0.18
Consensus pattern (22 bp):
GGCCTATGGCGCGACATGACAA
Found at i:18699648 original size:27 final size:28
Alignment explanation
Indices: 18699582--18699654 Score: 82
Period size: 26 Copynumber: 2.7 Consensus size: 28
18699572 AATATTTATT
* *
18699582 ATATTTTCAACTCTT-TGTTTTAATATAA
1 ATATTTTCAACT-TTATTTTTTAACATAA
18699610 A-A-TTTCAACTTTATTTTTTAACA-AA
1 ATATTTTCAACTTTATTTTTTAACATAA
*
18699635 ATATTTTCAACTTTAATTTT
1 ATATTTTCAACTTTATTTTT
18699655 AGTAGGAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
25 5 0.13
26 17 0.44
27 16 0.41
28 1 0.03
ACGTcount: A:0.34, C:0.11, G:0.01, T:0.53
Consensus pattern (28 bp):
ATATTTTCAACTTTATTTTTTAACATAA
Found at i:18702177 original size:20 final size:21
Alignment explanation
Indices: 18702140--18702178 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
18702130 TCTTTTTCAT
*
18702140 TAAAGATGGAGATCGAAACCC
1 TAAAGATGGAGAGCGAAACCC
*
18702161 TAAAGA-GGAGAGGGAAAC
1 TAAAGATGGAGAGCGAAAC
18702179 ACCATTCGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.46, C:0.13, G:0.31, T:0.10
Consensus pattern (21 bp):
TAAAGATGGAGAGCGAAACCC
Found at i:18702715 original size:41 final size:41
Alignment explanation
Indices: 18702661--18702750 Score: 101
Period size: 41 Copynumber: 2.2 Consensus size: 41
18702651 TGGGCATTGC
* *
18702661 GCCTAGTAGGCTTTAT-ACAGATGTATTATATCAGGCCTTAA
1 GCCTAGCAAGCTTTATGAC-GATGTATTATATCAGGCCTTAA
* * * **
18702702 GCCTAGCAAGCTTTATGACGGTGTATTGTATCGGGCCTTGG
1 GCCTAGCAAGCTTTATGACGATGTATTATATCAGGCCTTAA
18702743 GCCTAGCA
1 GCCTAGCA
18702751 TGCTATTAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 39 0.95
42 2 0.05
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (41 bp):
GCCTAGCAAGCTTTATGACGATGTATTATATCAGGCCTTAA
Found at i:18705931 original size:19 final size:18
Alignment explanation
Indices: 18705906--18705987 Score: 78
Period size: 19 Copynumber: 4.3 Consensus size: 18
18705896 ATATATGTTT
18705906 ATATATATATATAAAAAC
1 ATATATATATATAAAAAC
*
18705924 ACTATATATGTATAAAAA-
1 A-TATATATATATAAAAAC
18705942 ATATATGTATATATATAAAAC
1 ATATA--TATATATA-AAAAC
*
18705963 AATATATATATGTATAAAA-
1 -ATATATATATATA-AAAAC
18705982 ATATAT
1 ATATAT
18705988 GTAGAAAATA
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
17 4 0.07
18 8 0.15
19 22 0.40
20 16 0.29
22 5 0.09
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (18 bp):
ATATATATATATAAAAAC
Found at i:18705982 original size:40 final size:42
Alignment explanation
Indices: 18705851--18705990 Score: 160
Period size: 47 Copynumber: 3.2 Consensus size: 42
18705841 TAATTTTAAT
* * *
18705851 AATATATATATATATATATATAAAACAGTATATATGTACAAAAA
1 AATATATGTATATATATATA-AAAACACTATATATGTA-TAAAA
18705895 AATATATGTTTATATATATATATAAAAACACTATATATGTATAAAA
1 AATATATG----TATATATATATAAAAACACTATATATGTATAAAA
*
18705941 AATATATGTATATATATA-AAACAATA-TATATATGTAT-AAA
1 AATATATGTATATATATATAAA-AACACTATATATGTATAAAA
18705981 AATATATGTA
1 AATATATGTA
18705991 GAAAATATGT
Statistics
Matches: 87, Mismatches: 4, Indels: 14
0.83 0.04 0.13
Matches are distributed among these distances:
40 13 0.15
41 14 0.16
42 13 0.15
44 7 0.08
46 12 0.14
47 16 0.18
48 12 0.14
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.37
Consensus pattern (42 bp):
AATATATGTATATATATATAAAAACACTATATATGTATAAAA
Found at i:18712882 original size:29 final size:29
Alignment explanation
Indices: 18712850--18712914 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
18712840 ATAAAGCATT
18712850 AACACACAACAAAATGTAACACAGAT-AGA
1 AACACACAACAAAATGTAACACAG-TCAGA
** *
18712879 AACACACAACAGTATGTAGCACAGTCAGA
1 AACACACAACAAAATGTAACACAGTCAGA
18712908 AACACAC
1 AACACAC
18712915 CTCAAGCGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
28 1 0.03
29 31 0.97
ACGTcount: A:0.52, C:0.25, G:0.12, T:0.11
Consensus pattern (29 bp):
AACACACAACAAAATGTAACACAGTCAGA
Found at i:18713421 original size:18 final size:19
Alignment explanation
Indices: 18713380--18713423 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
18713370 GGTCAACAGA
18713380 TCGGGCTCACAGGTATCAAG
1 TCGGG-TCACAGGTATCAAG
*
18713400 TCGGGTCACAGGT-TCGAG
1 TCGGGTCACAGGTATCAAG
18713418 TCGGGT
1 TCGGGT
18713424 ATTGGGTCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.43
19 8 0.35
20 5 0.22
ACGTcount: A:0.18, C:0.23, G:0.36, T:0.23
Consensus pattern (19 bp):
TCGGGTCACAGGTATCAAG
Found at i:18717679 original size:39 final size:40
Alignment explanation
Indices: 18717614--18717703 Score: 128
Period size: 39 Copynumber: 2.3 Consensus size: 40
18717604 AAAATGCATA
* * * *
18717614 TGATTGCACTTTGGTGCCCCTGACTGCATTTTGGTGCCC-
1 TGATTGCACTTCGGTGCCCCTAACTGCACTTGGGTGCCCT
*
18717653 TGATTGCACTTCGGTGTCCCTAACTGCACTTGGGTGCCCT
1 TGATTGCACTTCGGTGCCCCTAACTGCACTTGGGTGCCCT
18717693 TGATTGCACTT
1 TGATTGCACTT
18717704 TCATGCCCTT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 34 0.76
40 11 0.24
ACGTcount: A:0.12, C:0.28, G:0.24, T:0.36
Consensus pattern (40 bp):
TGATTGCACTTCGGTGCCCCTAACTGCACTTGGGTGCCCT
Found at i:18717745 original size:20 final size:20
Alignment explanation
Indices: 18717617--18717832 Score: 127
Period size: 20 Copynumber: 10.9 Consensus size: 20
18717607 ATGCATATGA
* *
18717617 TTGCACTTTGGTGCCCCTGA
1 TTGCACTTTGGTGCCTCTGT
* * *
18717637 CTGCATTTTGGTGCC-CTGA
1 TTGCACTTTGGTGCCTCTGT
* **
18717656 TTGCACTTCGGTGTCC-CTAA
1 TTGCACTTTGGTG-CCTCTGT
* * *
18717676 CTGCACTTGGGTGCC-CTTGA
1 TTGCACTTTGGTGCCTC-TGT
**
18717696 TTGCACTTTCATGCC-CT-T
1 TTGCACTTTGGTGCCTCTGT
* *
18717714 ATTTCCCTTTGGTGCCTCTGT
1 -TTGCACTTTGGTGCCTCTGT
* * * *
18717735 GTGCACTTTGGCGCTTTTGT
1 TTGCACTTTGGTGCCTCTGT
18717755 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
* * *
18717775 TTGTACTTCGGTACCTCTGT
1 TTGCACTTTGGTGCCTCTGT
* * * *
18717795 ATGCACTATGATGCCTTTGT
1 TTGCACTTTGGTGCCTCTGT
*
18717815 TTGCACTTTGGTACCTCT
1 TTGCACTTTGGTGCCTCT
18717833 ATTTTGCATG
Statistics
Matches: 148, Mismatches: 43, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
19 29 0.20
20 118 0.80
21 1 0.01
ACGTcount: A:0.10, C:0.27, G:0.22, T:0.41
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTGT
Found at i:18719560 original size:4 final size:4
Alignment explanation
Indices: 18719551--18719597 Score: 85
Period size: 4 Copynumber: 11.8 Consensus size: 4
18719541 TAATTCACCA
*
18719551 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT ATAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
18719598 CGGTATCAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:18731200 original size:28 final size:28
Alignment explanation
Indices: 18731159--18731223 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
18731149 TAGTTTCTTT
* *
18731159 TTATGTTTTTTACAAACCACTCTTTTTA
1 TTATCTTTCTTACAAACCACTCTTTTTA
18731187 TTATCTTTCTTACAAACCACTCTTTTTA
1 TTATCTTTCTTACAAACCACTCTTTTTA
18731215 TTATCTTTC
1 TTATCTTTC
18731224 ATACTATAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.23, C:0.22, G:0.02, T:0.54
Consensus pattern (28 bp):
TTATCTTTCTTACAAACCACTCTTTTTA
Found at i:18749465 original size:21 final size:21
Alignment explanation
Indices: 18749441--18749481 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
18749431 CGGAGACAGA
18749441 AAAAGAA-AAAGAAGACGAAGG
1 AAAAGAAGAAAGAAGA-GAAGG
*
18749462 AAAAGAAGTAAGAAGAGAAG
1 AAAAGAAGAAAGAAGAGAAG
18749482 AACCTGATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.66, C:0.02, G:0.29, T:0.02
Consensus pattern (21 bp):
AAAAGAAGAAAGAAGAGAAGG
Found at i:18749921 original size:34 final size:34
Alignment explanation
Indices: 18749882--18749951 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 34
18749872 GTAGCTGTAA
* * * *
18749882 TTTAATTGTCACCACATTTTCTTTGTCATTGCAT
1 TTTAATTGTCACCACATATGCATTGTCATTACAT
*
18749916 TTTAATTGTCACTACATATGCATTGTCATTACAT
1 TTTAATTGTCACCACATATGCATTGTCATTACAT
18749950 TT
1 TT
18749952 CCATGTGTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.24, C:0.19, G:0.09, T:0.49
Consensus pattern (34 bp):
TTTAATTGTCACCACATATGCATTGTCATTACAT
Found at i:18750580 original size:23 final size:23
Alignment explanation
Indices: 18750520--18750582 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 23
18750510 ACTACACGAG
*
18750520 TTAATAGTAAAATCTGTCAGTGCAAA
1 TTAATAG-AAAA--TGTCAGAGCAAA
*
18750546 TGTAATATAAAATGTCAGAGCAAA
1 T-TAATAGAAAATGTCAGAGCAAA
18750570 TTAATAGAAAATG
1 TTAATAGAAAATG
18750583 GATTGGTTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
23 11 0.33
24 12 0.36
26 5 0.15
27 5 0.15
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.29
Consensus pattern (23 bp):
TTAATAGAAAATGTCAGAGCAAA
Found at i:18756649 original size:10 final size:10
Alignment explanation
Indices: 18756634--18756679 Score: 56
Period size: 10 Copynumber: 4.6 Consensus size: 10
18756624 GGGTTTGCTT
*
18756634 GGAGTTAATC
1 GGAGTTCATC
18756644 GGAGTTCATC
1 GGAGTTCATC
* *
18756654 GAAGTTCATT
1 GGAGTTCATC
*
18756664 GAAGTTCATC
1 GGAGTTCATC
18756674 GGAGTT
1 GGAGTT
18756680 TGTTTTTATC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (10 bp):
GGAGTTCATC
Found at i:18756817 original size:9 final size:9
Alignment explanation
Indices: 18756778--18756847 Score: 56
Period size: 9 Copynumber: 7.7 Consensus size: 9
18756768 CTCATGTCAT
18756778 TTTATTGTTA
1 TTTATT-TTA
* *
18756788 TCTCTTTTA
1 TTTATTTTA
18756797 -TTATTATTA
1 TTTATT-TTA
*
18756806 TTTATTTAA
1 TTTATTTTA
18756815 TTTATATTTA
1 TTTAT-TTTA
18756825 -TTATCTTTA
1 TTTAT-TTTA
18756834 TTTA-TTTA
1 TTTATTTTA
18756842 TTTATT
1 TTTATT
18756848 ATTAAATTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 11
0.73 0.11 0.17
Matches are distributed among these distances:
8 11 0.23
9 22 0.46
10 15 0.31
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.70
Consensus pattern (9 bp):
TTTATTTTA
Found at i:18756822 original size:24 final size:23
Alignment explanation
Indices: 18756795--18756851 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 23
18756785 TTATCTCTTT
18756795 TATTATTATTATTTATTTAATTTA
1 TATTATTATTATTTATTT-ATTTA
*
18756819 TATTTATTA-TCTTTATTTATTTA
1 TA-TTATTATTATTTATTTATTTA
18756842 T-TTATTATTA
1 TATTATTATTA
18756852 AATTTTATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
21 6 0.21
22 1 0.03
23 6 0.21
24 10 0.34
25 6 0.21
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (23 bp):
TATTATTATTATTTATTTATTTA
Found at i:18756849 original size:15 final size:15
Alignment explanation
Indices: 18756800--18756850 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
18756790 TCTTTTATTA
18756800 TTATTATTTATTTAAT
1 TTATTATTTATTT-AT
18756816 TTA-TATTTA-TTAT
1 TTATTATTTATTTAT
*
18756829 CT-TTATTTATTTAT
1 TTATTATTTATTTAT
18756843 TTATTATT
1 TTATTATT
18756851 AAATTTTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
13 9 0.30
14 7 0.23
15 11 0.37
16 3 0.10
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (15 bp):
TTATTATTTATTTAT
Found at i:18756850 original size:28 final size:28
Alignment explanation
Indices: 18756793--18756846 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
18756783 TGTTATCTCT
18756793 TTTATTATTATTATTTATTTAATTTATA
1 TTTATTATTATTATTTATTTAATTTATA
18756821 TTTATTATCT-TTATTTATTT-ATTTAT
1 TTTATTAT-TATTATTTATTTAATTTAT
18756847 TATTAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 6 0.24
28 18 0.72
29 1 0.04
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (28 bp):
TTTATTATTATTATTTATTTAATTTATA
Found at i:18756872 original size:31 final size:32
Alignment explanation
Indices: 18756803--18756872 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
18756793 TTTATTATTA
*
18756803 TTATTTATTTAATTTATATTTATTATCTTTAT
1 TTATTTATTTAATTTATAATTATTATCTTTAT
* * *
18756835 TTATTTATTTATTATTA-AATT-TTATGTTTTT
1 TTATTTATTTAAT-TTATAATTATTATCTTTAT
18756866 TTATTTA
1 TTATTTA
18756873 ATTACATGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
31 15 0.45
32 15 0.45
33 3 0.09
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.70
Consensus pattern (32 bp):
TTATTTATTTAATTTATAATTATTATCTTTAT
Found at i:18761998 original size:16 final size:16
Alignment explanation
Indices: 18761977--18762008 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
18761967 GGAATGCAGG
18761977 GGCAACATATCAAAGA
1 GGCAACATATCAAAGA
18761993 GGCAACATATCAAAGA
1 GGCAACATATCAAAGA
18762009 CCAATGGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.19, T:0.12
Consensus pattern (16 bp):
GGCAACATATCAAAGA
Found at i:18764584 original size:19 final size:20
Alignment explanation
Indices: 18764538--18764584 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
18764528 CTTTTGATTG
18764538 ATGTTTGCTATTTTTTGACCA
1 ATGTTTGCTA-TTTTTGACCA
**
18764559 ACATTTGCTA-TTTTGACCA
1 ATGTTTGCTATTTTTGACCA
18764578 ATGTTTG
1 ATGTTTG
18764585 TAATCTTTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 14 0.64
21 8 0.36
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.49
Consensus pattern (20 bp):
ATGTTTGCTATTTTTGACCA
Found at i:18765417 original size:48 final size:49
Alignment explanation
Indices: 18765320--18765645 Score: 223
Period size: 48 Copynumber: 6.7 Consensus size: 49
18765310 AACTGCTGAC
* * * * * *
18765320 CTAACGCCTTAAAACCAAAGAGGGACAGATTGAAGTCATAATGGTGGAT
1 CTAACACCTTAAAACCAAAGAGGGAAAGATTGAAGCCGTAACGATGGAT
* *
18765369 CTAACACCTTAAAA-CTAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
1 CTAACACCTTAAAACCAAAGAGGGAAAGATTGAAGCCGTAACGATGGAT
* *** * ** * * *
18765417 CTTACACCTTAAAATTGAGGAGGGATCGGTTGAAGCCGTAACGAAGGAC
1 CTAACACCTTAAAACCAAAGAGGGAAAGATTGAAGCCGTAACGATGGAT
* * * ** *
18765466 CTAACACC-TAAAA-TAGAATAGGGAAAGATTGAAGTCACAGC-ATGGAT
1 CTAACACCTTAAAACCA-AAGAGGGAAAGATTGAAGCCGTAACGATGGAT
* * * * * * * *
18765513 CTTACATCTTAAAACCAAAGAGGGATAGGTTGAAGCTGTAATGATAGAC
1 CTAACACCTTAAAACCAAAGAGGGAAAGATTGAAGCCGTAACGATGGAT
* * * * * *
18765562 CTAACACCCTAAAATCGAAGAGAGATAGATTGAAG-CGCAAC-AGTGGAT
1 CTAACACCTTAAAACCAAAGAGGGAAAGATTGAAGCCGTAACGA-TGGAT
* * *
18765610 TTGACACCTTAAAACCAAAGAGGGAAAGATTAAAGC
1 CTAACACCTTAAAACCAAAGAGGGAAAGATTGAAGC
18765646 TGCAATAGTA
Statistics
Matches: 206, Mismatches: 64, Indels: 14
0.73 0.23 0.05
Matches are distributed among these distances:
47 12 0.06
48 115 0.56
49 79 0.38
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.19
Consensus pattern (49 bp):
CTAACACCTTAAAACCAAAGAGGGAAAGATTGAAGCCGTAACGATGGAT
Found at i:18765470 original size:97 final size:95
Alignment explanation
Indices: 18765326--18765634 Score: 266
Period size: 97 Copynumber: 3.2 Consensus size: 95
18765316 TGACCTAACG
* * * * * * * *
18765326 CCTTAAAACCAAAGAGGGACAGATTGAAGTCATAATGGTGGATCTAACACCTTAAAACTAAGAGG
1 CCTTAAAACCAAAGAGGGATAGGTTGAAGCCGTAACGATAGACCTAACACC-TAAAACTAAGAGG
**
18765391 GAAAGATTGAAGCCGTAACGACGGATCTTACA
65 GAAAGATTGAAGCCACAAC-ACGGATCTTACA
*** * * *
18765423 CCTTAAAATTGAGGAGGGATCGGTTGAAGCCGTAACGA-AGGACCTAACACCTAAAA-TAGAATA
1 CCTTAAAACCAAAGAGGGATAGGTTGAAGCCGTAACGATA-GACCTAACACCTAAAACT--AAGA
* * *
18765486 GGGAAAGATTGAAGTCACAGCATGGATCTTACA
63 GGGAAAGATTGAAGCCACAACACGGATCTTACA
* * * *
18765519 TCTTAAAACCAAAGAGGGATAGGTTGAAGCTGTAATGATAGACCTAACACCCTAAAATCGAAGAG
1 CCTTAAAACCAAAGAGGGATAGGTTGAAGCCGTAACGATAGACCTAACA-CCTAAAA-CTAAGAG
* * * *
18765584 AGATAGATTGAAG-CGCAACAGTGGAT-TTGACA
64 GGAAAGATTGAAGCCACAACA-CGGATCTT-ACA
18765616 CCTTAAAACCAAAGAGGGA
1 CCTTAAAACCAAAGAGGGA
18765635 AAGATTAAAG
Statistics
Matches: 169, Mismatches: 34, Indels: 18
0.76 0.15 0.08
Matches are distributed among these distances:
95 1 0.01
96 62 0.37
97 106 0.63
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (95 bp):
CCTTAAAACCAAAGAGGGATAGGTTGAAGCCGTAACGATAGACCTAACACCTAAAACTAAGAGGG
AAAGATTGAAGCCACAACACGGATCTTACA
Found at i:18765589 original size:49 final size:49
Alignment explanation
Indices: 18765287--18765820 Score: 214
Period size: 49 Copynumber: 11.0 Consensus size: 49
18765277 TCTTAGAGTT
* * * * * * *
18765287 GAAGAGGAATAGGTTGAAGCCGCAACTGCT-GACCTAACGCCTTAAAACC
1 GAAGAGGGATAGATTGAAGCCGCAA-TGATAGATCTAACACCCTAAAATC
* * * ** * * *
18765336 AAAGAGGGACAGATTGAAGTCATAATGGTGGATCTAACACCTTAAAA-C
1 GAAGAGGGATAGATTGAAGCCGCAATGATAGATCTAACACCCTAAAATC
* * * * ** * * *
18765384 TAAGAGGGAAAGATTGAAGCCGTAACGACGGATCTTACACCTTAAAATT
1 GAAGAGGGATAGATTGAAGCCGCAATGATAGATCTAACACCCTAAAATC
* * * * * * *
18765433 GAGGAGGGATCGGTTGAAGCCGTAACGA-AGGACCTAACA-CCTAAAATA
1 GAAGAGGGATAGATTGAAGCCGCAATGATA-GATCTAACACCCTAAAATC
* * * * * * * * *
18765481 GAATAGGGAAAGATTGAAGTCAC-A-GCATGGATCTTACATCTTAAAACC
1 GAAGAGGGATAGATTGAAGCCGCAATG-ATAGATCTAACACCCTAAAATC
* * * * *
18765529 AAAGAGGGATAGGTTGAAGCTGTAATGATAGACCTAACACCCTAAAATC
1 GAAGAGGGATAGATTGAAGCCGCAATGATAGATCTAACACCCTAAAATC
* * * * * * *
18765578 GAAGAGAGATAGATTGAAG-CGCAA-CAGTGGATTTGACACCTTAAAACC
1 GAAGAGGGATAGATTGAAGCCGCAATGA-TAGATCTAACACCCTAAAATC
* * * * * *
18765626 AAAGAGGGAAAGATTAAAGCTGCAAT-AGTAGATCTTACACCTTAAAA-C
1 GAAGAGGGATAGATTGAAGCCGCAATGA-TAGATCTAACACCCTAAAATC
** ** * *
18765674 TGAAGAGGGATA-AGTT-AAGCCATAATGGCAAACCTAACACCCTAAAATC
1 -GAAGAGGGATAGA-TTGAAGCCGCAATGATAGATCTAACACCCTAAAATC
* * * *
18765723 GAAAAGAGATAGATTGAAGCCACAATGGCTA-ATCTAACACCCTAAAATC
1 GAAGAGGGATAGATTGAAGCCGCAAT-GATAGATCTAACACCCTAAAATC
* * * * *
18765772 GAAGAGGGAACACATTGAATCCGCAACGAT-GAATCTTACACCCCTAAAA
1 GAAGAGGG-ATAGATTGAAGCCGCAATGATAG-ATCTAACA-CCCTAAAA
18765821 AATGTGGAAA
Statistics
Matches: 360, Mismatches: 103, Indels: 42
0.71 0.20 0.08
Matches are distributed among these distances:
46 1 0.00
47 10 0.03
48 153 0.43
49 165 0.46
50 23 0.06
51 8 0.02
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.19
Consensus pattern (49 bp):
GAAGAGGGATAGATTGAAGCCGCAATGATAGATCTAACACCCTAAAATC
Found at i:18765595 original size:145 final size:147
Alignment explanation
Indices: 18765287--18765743 Score: 382
Period size: 145 Copynumber: 3.1 Consensus size: 147
18765277 TCTTAGAGTT
* * ** * *
18765287 GAAGAG-GAATAGGTTGAAGCCGCAACTGCTGACCTAACGCCTTAAAACCAAAGAGGGACAGATT
1 GAAGAGAG-ATAGATTGAAGCCGCAACAGAGGACCTAACACCTTAAAACCAAAGAGGGAAAGATT
* * * * * *
18765351 GAAG-T-CATA-ATGGTGGATCTAACACCTTAAAA-CTAAGAGGGAAAGATTGAAGCCGTAACGA
65 AAAGCTGCA-ACA--GTGGATCTTACACCTTAAAACCAAAGAGGGATAGGTTGAAGCCGTAATGA
* * * * *
18765412 CGGATCTTACACCTTAAAATT
127 CAGACCTAACACCCTAAAATC
* * * * * * *
18765433 GAGGAGGGATCGGTTGAAGCCGTAAC-GAAGGACCTAACACC-TAAAA-TAGAATAGGGAAAGAT
1 GAAGAGAGATAGATTGAAGCCGCAACAG-AGGACCTAACACCTTAAAACCA-AAGAGGGAAAGAT
* * *
18765495 TGAAG-T-C-ACAGCATGGATCTTACATCTTAAAACCAAAGAGGGATAGGTTGAAGCTGTAATGA
64 TAAAGCTGCAACAG--TGGATCTTACACCTTAAAACCAAAGAGGGATAGGTTGAAGCCGTAATGA
*
18765557 TAGACCTAACACCCTAAAATC
127 CAGACCTAACACCCTAAAATC
* ** *
18765578 GAAGAGAGATAGATTGAAG-CGCAACAGTGGATTTGACACCTTAAAACCAAAGAGGGAAAGATTA
1 GAAGAGAGATAGATTGAAGCCGCAACAGAGGACCTAACACCTTAAAACCAAAGAGGGAAAGATTA
* * ** * * * *
18765642 AAGCTGCAATAGTAGATCTTACACCTTAAAACTGAAGAGGGATAAGTT-AAGCCATAATGGCAAA
66 AAGCTGCAACAGTGGATCTTACACCTTAAAACCAAAGAGGGATAGGTTGAAGCCGTAATGACAGA
18765706 CCTAACACCCTAAAATC
131 CCTAACACCCTAAAATC
*
18765723 GAAAAGAGATAGATTGAAGCC
1 GAAGAGAGATAGATTGAAGCC
18765744 ACAATGGCTA
Statistics
Matches: 251, Mismatches: 46, Indels: 28
0.77 0.14 0.09
Matches are distributed among these distances:
142 1 0.00
143 1 0.00
144 33 0.13
145 146 0.58
146 65 0.26
147 2 0.01
148 3 0.01
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.19
Consensus pattern (147 bp):
GAAGAGAGATAGATTGAAGCCGCAACAGAGGACCTAACACCTTAAAACCAAAGAGGGAAAGATTA
AAGCTGCAACAGTGGATCTTACACCTTAAAACCAAAGAGGGATAGGTTGAAGCCGTAATGACAGA
CCTAACACCCTAAAATC
Found at i:18765666 original size:97 final size:97
Alignment explanation
Indices: 18765326--18765685 Score: 252
Period size: 97 Copynumber: 3.7 Consensus size: 97
18765316 TGACCTAACG
* * * * * * *
18765326 CCTTAAAACCAAAGAGGGACAGATTGAAG-T-CATAATGGTGGATCTAACACCTTAAAA-CTAAG
1 CCTTAAAACCAAAGAGGGAAAGATTAAAGCTGC--AATGATAGACCTAACACCCTAAAATCGAAG
* * ** *
18765388 AGGGAAAGATTGAAGCCGTAACGACGGATCTTACA
64 AGGGATAGATTGAAGTCACAAC-ATGGATCTTACA
*** * ** * * * * * * *
18765423 CCTTAAAATTGAGGAGGGATCGGTTGAAGCCGTAACGA-AGGACCTAACA-CCTAAAATAGAATA
1 CCTTAAAACCAAAGAGGGAAAGATTAAAGCTGCAATGATA-GACCTAACACCCTAAAATCGAAGA
* *
18765486 GGGAAAGATTGAAGTCACAGCATGGATCTTACA
65 GGGATAGATTGAAGTCACAACATGGATCTTACA
* * * * *
18765519 TCTTAAAACCAAAGAGGGATAGGTTGAAGCTGTAATGATAGACCTAACACCCTAAAATCGAAGAG
1 CCTTAAAACCAAAGAGGGAAAGATTAAAGCTGCAATGATAGACCTAACACCCTAAAATCGAAGAG
* *
18765584 AGATAGATTGAAG-CGCAACAGTGGAT-TTGACA
66 GGATAGATTGAAGTCACAACA-TGGATCTT-ACA
* * *
18765616 CCTTAAAACCAAAGAGGGAAAGATTAAAGCTGCAAT-AGTAGATCTTACACCTTAAAA-CTGAAG
1 CCTTAAAACCAAAGAGGGAAAGATTAAAGCTGCAATGA-TAGACCTAACACCCTAAAATC-GAAG
18765679 AGGGATA
64 AGGGATA
18765686 AGTTAAGCCA
Statistics
Matches: 208, Mismatches: 45, Indels: 20
0.76 0.16 0.07
Matches are distributed among these distances:
96 65 0.31
97 143 0.69
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.20
Consensus pattern (97 bp):
CCTTAAAACCAAAGAGGGAAAGATTAAAGCTGCAATGATAGACCTAACACCCTAAAATCGAAGAG
GGATAGATTGAAGTCACAACATGGATCTTACA
Found at i:18766226 original size:81 final size:81
Alignment explanation
Indices: 18765960--18766271 Score: 479
Period size: 81 Copynumber: 3.9 Consensus size: 81
18765950 TTACATCATC
* * *
18765960 CCATCCAATCTCTTACCCCGGCCATGGGGTAGATTGAAGAACATCCAATCTTTTACCCTAACCAG
1 CCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAG-TCATCCAATCTTTTACCCTAACCAG
18766025 AGGGCAGATTGAAA-ACA
65 AGGGCAGATT-AAAGACA
* * * *
18766042 CCATCAAATCTCTTACCCC-ACCATAGGGCAGATT-AACGTCATCTAATCTTTTACCCTAACTAG
1 CCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAA-GTCATCCAATCTTTTACCCTAACCAG
*
18766105 A-GGTAGATTAAAGACA
65 AGGGCAGATTAAAGACA
*
18766121 CCATCCAATCTCTTACCCTGACCATGGGGCAGATTGAAGTCATCCAATCTTTTACCCTAACCAGA
1 CCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGTCATCCAATCTTTTACCCTAACCAGA
18766186 GGGCAGATTAAAGACA
66 GGGCAGATTAAAGACA
*
18766202 CCATCCAATCTCTTACCCCGACCATGGGGCAAATTGAAGTCATCCAATCTTTTACCCTAACCAGA
1 CCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGTCATCCAATCTTTTACCCTAACCAGA
18766267 GGGCA
66 GGGCA
18766272 TATTGAAGTT
Statistics
Matches: 209, Mismatches: 16, Indels: 11
0.89 0.07 0.05
Matches are distributed among these distances:
78 3 0.01
79 27 0.13
80 64 0.31
81 97 0.46
82 18 0.09
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (81 bp):
CCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGTCATCCAATCTTTTACCCTAACCAGA
GGGCAGATTAAAGACA
Found at i:18766254 original size:161 final size:161
Alignment explanation
Indices: 18765960--18766268 Score: 489
Period size: 161 Copynumber: 1.9 Consensus size: 161
18765950 TTACATCATC
* *
18765960 CCATCCAATCTCTTACCCCGGCCATGGGGTAGATTGAAGAACATCCAATCTTTTACCCTAACCAG
1 CCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGAACATCCAATCTTTTACCCTAACCAG
* *
18766025 AGGGCAGATTGAAAACACCATCAAATCTCTTACCCCACCATAGGGCAGATTAACGTCATCTAATC
66 AGGGCAGATTGAAAACACCATCAAATCTCTTACCCCACCATAGGGCAAATTAACGTCATCCAATC
*
18766090 TTTTACCCTAACTAGAGGTAGATTAAAGACA
131 TTTTACCCTAACCAGAGGTAGATTAAAGACA
* *
18766121 CCATCCAATCTCTTACCCTGACCATGGGGCAGATTGAAG-TCATCCAATCTTTTACCCTAACCAG
1 CCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGAACATCCAATCTTTTACCCTAACCAG
* *
18766185 AGGGCAGATT-AAAGACACCATCCAATCTCTTACCCCGACCATGGGGCAAATTGAA-GTCATCCA
66 AGGGCAGATTGAAA-ACACCATCAAATCTCTTACCCC-ACCATAGGGCAAATT-AACGTCATCCA
18766248 ATCTTTTACCCTAACCAGAGG
128 ATCTTTTACCCTAACCAGAGG
18766269 GCATATTGAA
Statistics
Matches: 136, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
159 3 0.02
160 55 0.40
161 76 0.56
162 2 0.01
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (161 bp):
CCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGAACATCCAATCTTTTACCCTAACCAG
AGGGCAGATTGAAAACACCATCAAATCTCTTACCCCACCATAGGGCAAATTAACGTCATCCAATC
TTTTACCCTAACCAGAGGTAGATTAAAGACA
Found at i:18766955 original size:10 final size:10
Alignment explanation
Indices: 18766940--18766975 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
18766930 GGTTTGCTCA
*
18766940 GAGTTCATTG
1 GAGTTCATCG
18766950 GAGTTCATCG
1 GAGTTCATCG
*
18766960 AAGTTCATCG
1 GAGTTCATCG
18766970 GAGTTC
1 GAGTTC
18766976 GTTCTCATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (10 bp):
GAGTTCATCG
Found at i:18767230 original size:21 final size:23
Alignment explanation
Indices: 18767182--18767230 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
18767172 TTAATTTAAT
* *
18767182 CATTTTAGATATTTTTATGATTG
1 CATTTTAGATATTTATATCATTG
*
18767205 CATTTTATATATTTAT-TCATTG
1 CATTTTAGATATTTATATCATTG
18767227 -ATTT
1 CATTT
18767231 GTTATTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 4 0.17
22 5 0.22
23 14 0.61
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (23 bp):
CATTTTAGATATTTATATCATTG
Found at i:18767405 original size:29 final size:30
Alignment explanation
Indices: 18767372--18767436 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
18767362 TAATTAATAT
*
18767372 TTATTGTTA-TT-ATCACTATGATTATATTG
1 TTATTGTTATTTAAT-ACTATAATTATATTG
*
18767401 TTATT-TTATTTAATACTATAATTATATTT
1 TTATTGTTATTTAATACTATAATTATATTG
18767430 TTATTGT
1 TTATTGT
18767437 GTTATTAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 3 0.10
29 25 0.81
30 3 0.10
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (30 bp):
TTATTGTTATTTAATACTATAATTATATTG
Found at i:18772399 original size:41 final size:41
Alignment explanation
Indices: 18772345--18772560 Score: 158
Period size: 41 Copynumber: 5.3 Consensus size: 41
18772335 CGGGCATTAC
* *
18772345 GCCTAGCAAGCTTTATGCTAGTGTATTGTATTGGACATTGT
1 GCCTAGCAGGCTTTATGCTAGTGTATTGTATTGGACCTTGT
* *
18772386 GCCTAGCAGGCTTTATGCTGGTGTATTGTATTGGGCCTT-T
1 GCCTAGCAGGCTTTATGCTAGTGTATTGTATTGGACCTTGT
* * * * * *
18772426 GGCCTAGTAGGCTTTATGCCAATGTATTCTA-TCGAGCCTTGG
1 -GCCTAGCAGGCTTTATGCTAGTGTATTGTATTGGA-CCTTGT
* * * * * *
18772468 GCCTAGCAGGCTTCATG-TCG-GTGACTT-T-TCGGGCTTTGA
1 GCCTAGCAGGCTTTATGCTAGTGT-A-TTGTATTGGACCTTGT
** *
18772507 GATTAGCAGGCTTTATGCTAGTGTATTGTATTAGG-CCTTGA
1 GCCTAGCAGGCTTTATGCTAGTGTATTGTATT-GGACCTTGT
*
18772548 GCCTAGTAGGCTT
1 GCCTAGCAGGCTT
18772561 CGTGCCGATG
Statistics
Matches: 133, Mismatches: 31, Indels: 22
0.72 0.17 0.12
Matches are distributed among these distances:
39 22 0.17
40 10 0.08
41 99 0.74
42 2 0.02
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.37
Consensus pattern (41 bp):
GCCTAGCAGGCTTTATGCTAGTGTATTGTATTGGACCTTGT
Found at i:18772545 original size:80 final size:78
Alignment explanation
Indices: 18772345--18772611 Score: 232
Period size: 80 Copynumber: 3.3 Consensus size: 78
18772335 CGGGCATTAC
* * * *
18772345 GCCTAGCAAGCTTTATGCTAGTGTATTGTATTGGACATTGTGCCTAGCAGGCTTTATGCTGGTGT
1 GCCTAGCAGGCTTTATGCTAGTGTATTGTATTGG-CCTTGAGCCTAGCAGGCTTCATGC-GGTG-
*
18772410 A-TTGTATTGGGCCTTTG-
63 ACTT-T-TCGGG-CTTTGA
* * * * * *
18772427 GCCTAGTAGGCTTTATGCCAATGTATTCTATCGAGCCTTGGGCCTAGCAGGCTTCATGTCGGTGA
1 GCCTAGCAGGCTTTATGCTAGTGTATTGTATTG-GCCTTGAGCCTAGCAGGCTTCATG-CGGTGA
18772492 CTTTTCGGGCTTTGA
64 CTTTTCGGGCTTTGA
** * * *
18772507 GATTAGCAGGCTTTATGCTAGTGTATTGTATTAGGCCTTGAGCCTAGTAGGCTTCGTGCCGATGA
1 GCCTAGCAGGCTTTATGCTAGTGTATTGTATT-GGCCTTGAGCCTAGCAGGCTTCATG-CGGTGA
* *
18772572 CTTATCGAGCTTTGA
64 CTTTTCGGGCTTTGA
* * **
18772587 GCGTAGAAGGCTTCGTGCTAGTGTA
1 GCCTAGCAGGCTTTATGCTAGTGTA
18772612 ACTATTCGTA
Statistics
Matches: 151, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
79 5 0.03
80 88 0.58
81 3 0.02
82 53 0.35
83 2 0.01
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.35
Consensus pattern (78 bp):
GCCTAGCAGGCTTTATGCTAGTGTATTGTATTGGCCTTGAGCCTAGCAGGCTTCATGCGGTGACT
TTTCGGGCTTTGA
Found at i:18777601 original size:33 final size:34
Alignment explanation
Indices: 18777562--18777628 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 34
18777552 GAATAGATTT
*
18777562 CTCCCCCT-TAATAAAAG-TCATTTTGAAATTAAG
1 CTCCCCCTAT-ATAAAAGATCATTTTCAAATTAAG
*
18777595 CTCCCCCTATATAAAAGATCATTTTCAATTTAAG
1 CTCCCCCTATATAAAAGATCATTTTCAAATTAAG
18777629 GCATAAAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
33 15 0.50
34 15 0.50
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (34 bp):
CTCCCCCTATATAAAAGATCATTTTCAAATTAAG
Found at i:18780253 original size:20 final size:20
Alignment explanation
Indices: 18780225--18780336 Score: 133
Period size: 20 Copynumber: 5.7 Consensus size: 20
18780215 TGCAGCTTCG
*
18780225 TTGTTTTGGTAGAAGCATAC
1 TTGTATTGGTAGAAGCATAC
*
18780245 TTGTATTGGTAGAA-C-TTC
1 TTGTATTGGTAGAAGCATAC
*
18780263 GTTGTTTTGGTAGAAGCATAC
1 -TTGTATTGGTAGAAGCATAC
*
18780284 TTGTATTGGTAGAA-C-TTC
1 TTGTATTGGTAGAAGCATAC
*
18780302 GTTGTTTTGGTAGAAGCATAC
1 -TTGTATTGGTAGAAGCATAC
18780323 TTGTATTGGTAGAA
1 TTGTATTGGTAGAA
18780337 CTTCAGTTCT
Statistics
Matches: 77, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
18 4 0.05
19 28 0.36
20 41 0.53
21 4 0.05
ACGTcount: A:0.24, C:0.09, G:0.26, T:0.41
Consensus pattern (20 bp):
TTGTATTGGTAGAAGCATAC
Found at i:18780263 original size:39 final size:39
Alignment explanation
Indices: 18780220--18780340 Score: 242
Period size: 39 Copynumber: 3.1 Consensus size: 39
18780210 CAGTCTGCAG
18780220 CTTCGTTGTTTTGGTAGAAGCATACTTGTATTGGTAGAA
1 CTTCGTTGTTTTGGTAGAAGCATACTTGTATTGGTAGAA
18780259 CTTCGTTGTTTTGGTAGAAGCATACTTGTATTGGTAGAA
1 CTTCGTTGTTTTGGTAGAAGCATACTTGTATTGGTAGAA
18780298 CTTCGTTGTTTTGGTAGAAGCATACTTGTATTGGTAGAA
1 CTTCGTTGTTTTGGTAGAAGCATACTTGTATTGGTAGAA
18780337 CTTC
1 CTTC
18780341 AGTTCTATCG
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.22, C:0.12, G:0.25, T:0.41
Consensus pattern (39 bp):
CTTCGTTGTTTTGGTAGAAGCATACTTGTATTGGTAGAA
Found at i:18785029 original size:26 final size:26
Alignment explanation
Indices: 18785000--18785108 Score: 89
Period size: 26 Copynumber: 4.2 Consensus size: 26
18784990 GCTTCGTGCT
*
18785000 GGTGATTATATACCAGGCTTTGAACC
1 GGTGATTATATACCAGGCTTTGAGCC
* * *
18785026 GGTGATTATATATCAAG-TTTTATGCC
1 GGTGATTATATACCAGGCTTTGA-GCC
* *
18785052 GGTGATT-TAT-CTTAGGCTTTGTGCC
1 GGTGATTATATAC-CAGGCTTTGAGCC
* * * *
18785077 GGTGATTATCTATCAGGCTTTCAGTC
1 GGTGATTATATACCAGGCTTTGAGCC
18785103 GGTGAT
1 GGTGAT
18785109 ATAGACTGTA
Statistics
Matches: 63, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
25 19 0.30
26 44 0.70
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.39
Consensus pattern (26 bp):
GGTGATTATATACCAGGCTTTGAGCC
Found at i:18785081 original size:25 final size:26
Alignment explanation
Indices: 18784987--18785097 Score: 109
Period size: 26 Copynumber: 4.3 Consensus size: 26
18784977 TTGTGCCTAG
* * * *
18784987 CAGGCTTCGTGCTGGTGATTATATAC
1 CAGGCTTTGTGCCGGTGATTATCTAT
** *
18785013 CAGGCTTTGAACCGGTGATTATATAT
1 CAGGCTTTGTGCCGGTGATTATCTAT
* * *
18785039 CAAGTTTTATGCCGGTGATTTATCT-T
1 CAGGCTTTGTGCCGGTGA-TTATCTAT
18785065 -AGGCTTTGTGCCGGTGATTATCTAT
1 CAGGCTTTGTGCCGGTGATTATCTAT
18785090 CAGGCTTT
1 CAGGCTTT
18785098 CAGTCGGTGA
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
24 6 0.09
25 15 0.22
26 42 0.62
27 5 0.07
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (26 bp):
CAGGCTTTGTGCCGGTGATTATCTAT
Found at i:18785520 original size:16 final size:17
Alignment explanation
Indices: 18785499--18785531 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
18785489 TTACCTAGCT
18785499 CAAATTT-AACAAAACC
1 CAAATTTAAACAAAACC
18785515 CAAATTTAAACAAAACC
1 CAAATTTAAACAAAACC
18785532 AAAAAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.58, C:0.24, G:0.00, T:0.18
Consensus pattern (17 bp):
CAAATTTAAACAAAACC
Found at i:18786521 original size:30 final size:30
Alignment explanation
Indices: 18786471--18786669 Score: 142
Period size: 30 Copynumber: 6.6 Consensus size: 30
18786461 ATTTTTCGAC
* *
18786471 CCCT-AAACTTTCCAAAAAATT-TGAGTTTAA
1 CCCTCAAATTTTCC-AAAAATTCT-AATTTAA
*
18786501 CCCTCAAATTTTCCAAAAATTCTAATTTGA
1 CCCTCAAATTTTCCAAAAATTCTAATTTAA
* *
18786531 CCCTCAAATTTTCCAAAAATTCAAATTTGA
1 CCCTCAAATTTTCCAAAAATTCTAATTTAA
** * *
18786561 CCC-CAAATTTTTTTAAAAATTCAAATTTGAT
1 CCCTCAAA-TTTTCCAAAAATTCTAATTT-AA
* * *
18786592 CGCCT-AAA-CTTCCTAAAATTCTAATTTGA
1 C-CCTCAAATTTTCCAAAAATTCTAATTTAA
* * *
18786621 CCC-CTAAATTTTCCAAAAATTTTGATTTGA
1 CCCTC-AAATTTTCCAAAAATTCTAATTTAA
*
18786651 CCC-CTAAAGTTTCCAAAAA
1 CCCTC-AAATTTTCCAAAAA
18786670 ATTAATCTGA
Statistics
Matches: 140, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
28 2 0.01
29 8 0.06
30 115 0.82
31 10 0.07
32 5 0.04
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.35
Consensus pattern (30 bp):
CCCTCAAATTTTCCAAAAATTCTAATTTAA
Found at i:18786582 original size:60 final size:59
Alignment explanation
Indices: 18786501--18786669 Score: 182
Period size: 60 Copynumber: 2.8 Consensus size: 59
18786491 TTGAGTTTAA
18786501 CCCTCAAATTTTCCAAAAATTCTAATTTGACCCTCAAATTTTCCAAAAATTCAAATTTGAC
1 CCCT-AAATTTTCCAAAAATTCTAATTTGACCCTCAAA-TTTCCAAAAATTCAAATTTGAC
** * * * *
18786562 CCC-AAATTTTTTTAAAAATTCAAATTTGATCGCCT-AAACTTCCTAAAATTCTAATTTGAC
1 CCCTAAA-TTTTCCAAAAATTCTAATTTGA-C-CCTCAAATTTCCAAAAATTCAAATTTGAC
* *
18786622 CCCTAAATTTTCCAAAAATTTTGATTTGACCC-CTAAAGTTTCCAAAAA
1 CCCTAAATTTTCCAAAAATTCTAATTTGACCCTC-AAA-TTTCCAAAAA
18786670 ATTAATCTGA
Statistics
Matches: 88, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
58 2 0.02
59 7 0.08
60 66 0.75
61 10 0.11
62 3 0.03
ACGTcount: A:0.37, C:0.22, G:0.05, T:0.36
Consensus pattern (59 bp):
CCCTAAATTTTCCAAAAATTCTAATTTGACCCTCAAATTTCCAAAAATTCAAATTTGAC
Found at i:18791591 original size:49 final size:49
Alignment explanation
Indices: 18791526--18791951 Score: 311
Period size: 49 Copynumber: 8.7 Consensus size: 49
18791516 TCTACAGGTT
* * *
18791526 TGAAGGGAAAAATTGAAGCCGCAACGAAAAATC-TGATACCCTAGAGATA
1 TGAAGGGAAAGATTGAAGCCGCAACGAAGAATCTTG-TACCTTAGAGATA
* * * ** * * **
18791575 TGAAGAGAAAGGTTGAAGCCGCAATGGTGAACCTTGTACCTTAGGGACG
1 TGAAGGGAAAGATTGAAGCCGCAACGAAGAATCTTGTACCTTAGAGATA
* * ** * *
18791624 TGATGGGAAAGATTGAAGCCGCGACGGTGAATCTTGTACCCTAGAGATT
1 TGAAGGGAAAGATTGAAGCCGCAACGAAGAATCTTGTACCTTAGAGATA
* * * * * *
18791673 TGAAGGGAAAGATTAAAGCCACAATGACGAACCTTGTACCTTAGAGATG
1 TGAAGGGAAAGATTGAAGCCGCAACGAAGAATCTTGTACCTTAGAGATA
* *
18791722 TGAAGGGAAAGATTGAAGCCACAAC-AACAAATC-TGATACCTTAGAGATA
1 TGAAGGGAAAGATTGAAGCCGCAACGAA-GAATCTTG-TACCTTAGAGATA
* * ** * * * **
18791771 TGAAGAGAAAGGTTGAAGCCATAACGACGAACCTTGTACCTTAGGGACG
1 TGAAGGGAAAGATTGAAGCCGCAACGAAGAATCTTGTACCTTAGAGATA
* * * * * ** * *
18791820 TGATGGAAAAGATTGAAGCCACGATGGTGAATCTTGTACCCTAGAGTTA
1 TGAAGGGAAAGATTGAAGCCGCAACGAAGAATCTTGTACCTTAGAGATA
* * * ** * *
18791869 TGGAGGGAAAGGTTGAAGCCACAACGGCGAACCTTGTACCTTAGAGATG
1 TGAAGGGAAAGATTGAAGCCGCAACGAAGAATCTTGTACCTTAGAGATA
* * *
18791918 TGAAGGGAAAGATTG-GGCCACAACGACGAATCTT
1 TGAAGGGAAAGATTGAAGCCGCAACGAAGAATCTT
18791952 ACACCCTGAA
Statistics
Matches: 294, Mismatches: 78, Indels: 11
0.77 0.20 0.03
Matches are distributed among these distances:
48 19 0.06
49 270 0.92
50 5 0.02
ACGTcount: A:0.36, C:0.17, G:0.27, T:0.20
Consensus pattern (49 bp):
TGAAGGGAAAGATTGAAGCCGCAACGAAGAATCTTGTACCTTAGAGATA
Found at i:18791705 original size:98 final size:98
Alignment explanation
Indices: 18791526--18791943 Score: 473
Period size: 98 Copynumber: 4.3 Consensus size: 98
18791516 TCTACAGGTT
* * *
18791526 TGAAGGGAAAAATTGAAGCCGCAACGAAAAATCTGATACCCTAGAGATATGAAGAGAAAGGTTGA
1 TGAAGGGAAAGATTGAAGCCACAACGATAAATCTGATACCCTAGAGATATGAAGAGAAAGGTTGA
* * ** *
18791591 AGCCGCAATGGTGAACCTTGTACCTTAGGGACG
66 AGCCACAACGACGAACCTTGTACCTTAGAGACG
* * * * * * * * *
18791624 TGATGGGAAAGATTGAAGCCGCGACGGTGAATCTTG-TACCCTAGAGATTTGAAGGGAAAGATTA
1 TGAAGGGAAAGATTGAAGCCACAACGATAAATC-TGATACCCTAGAGATATGAAGAGAAAGGTTG
* *
18791688 AAGCCACAATGACGAACCTTGTACCTTAGAGATG
65 AAGCCACAACGACGAACCTTGTACCTTAGAGACG
* * *
18791722 TGAAGGGAAAGATTGAAGCCACAACAACAAATCTGATACCTTAGAGATATGAAGAGAAAGGTTGA
1 TGAAGGGAAAGATTGAAGCCACAACGATAAATCTGATACCCTAGAGATATGAAGAGAAAGGTTGA
* *
18791787 AGCCATAACGACGAACCTTGTACCTTAGGGACG
66 AGCCACAACGACGAACCTTGTACCTTAGAGACG
* * * * * * * * *
18791820 TGATGGAAAAGATTGAAGCCACGATGGTGAATCTTG-TACCCTAGAGTTATGGAGGGAAAGGTTG
1 TGAAGGGAAAGATTGAAGCCACAACGATAAATC-TGATACCCTAGAGATATGAAGAGAAAGGTTG
* *
18791884 AAGCCACAACGGCGAACCTTGTACCTTAGAGATG
65 AAGCCACAACGACGAACCTTGTACCTTAGAGACG
*
18791918 TGAAGGGAAAGATTG-GGCCACAACGA
1 TGAAGGGAAAGATTGAAGCCACAACGA
18791944 CGAATCTTAC
Statistics
Matches: 264, Mismatches: 53, Indels: 7
0.81 0.16 0.02
Matches are distributed among these distances:
97 9 0.03
98 251 0.95
99 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.20
Consensus pattern (98 bp):
TGAAGGGAAAGATTGAAGCCACAACGATAAATCTGATACCCTAGAGATATGAAGAGAAAGGTTGA
AGCCACAACGACGAACCTTGTACCTTAGAGACG
Found at i:18791807 original size:147 final size:146
Alignment explanation
Indices: 18791562--18791947 Score: 351
Period size: 147 Copynumber: 2.6 Consensus size: 146
18791552 AAAAATCTGA
* * * ***** * **
18791562 TACCCTAGAGATATGAAGAGAAAGGTTGAAGCCGCAATGGTGAACCTTGTACCTTAGGGACGTGA
1 TACCCTAGAGATATGAAGGGAAAGATTGAAGCCACAACAACAAACCTTGTACCTTAGAGATATGA
* * * * ** * ** *
18791627 TGGGAAAGATTGAAGCCGCGACGGTGAATCTTGTACCCTAGAGATTTGAAGGGAAAGATTAAAGC
66 AGAGAAAGATTG-AGCCACAACGACGAACCTTGTACCCTAGAGACGTGAAGGAAAAGATTAAAGC
18791692 CACAATGACGAACCTTG
130 CACAATGACGAACCTTG
* * *
18791709 TACCTTAGAGATGTGAAGGGAAAGATTGAAGCCACAACAACAAATC-TGATACCTTAGAGATATG
1 TACCCTAGAGATATGAAGGGAAAGATTGAAGCCACAACAACAAACCTTG-TACCTTAGAGATATG
* * * * * *
18791773 AAGAGAAAGGTTGAAGCCATAACGACGAACCTTGTACCTTAGGGACGTGATGGAAAAGATTGAAG
65 AAGAGAAAGATTG-AGCCACAACGACGAACCTTGTACCCTAGAGACGTGAAGGAAAAGATTAAAG
* ** *
18791838 CCACGATGGTGAATCTTG
129 CCACAATGACGAACCTTG
* * * ** * *
18791856 TACCCTAGAGTTATGGAGGGAAAGGTTGAAGCCACAACGGCGAACCTTGTACCTTAGAGATGTGA
1 TACCCTAGAGATATGAAGGGAAAGATTGAAGCCACAACAACAAACCTTGTACCTTAGAGATATGA
* *
18791921 AGGGAAAGATTGGGCCACAACGACGAA
66 AGAGAAAGATTGAGCCACAACGACGAA
18791948 TCTTACACCC
Statistics
Matches: 189, Mismatches: 48, Indels: 5
0.78 0.20 0.02
Matches are distributed among these distances:
146 15 0.08
147 172 0.91
148 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (146 bp):
TACCCTAGAGATATGAAGGGAAAGATTGAAGCCACAACAACAAACCTTGTACCTTAGAGATATGA
AGAGAAAGATTGAGCCACAACGACGAACCTTGTACCCTAGAGACGTGAAGGAAAAGATTAAAGCC
ACAATGACGAACCTTG
Found at i:18791860 original size:196 final size:196
Alignment explanation
Indices: 18791526--18791950 Score: 640
Period size: 196 Copynumber: 2.2 Consensus size: 196
18791516 TCTACAGGTT
* *
18791526 TGAAGGGAAAAATTGAAGCCGCAACGAA-AAATCTGATACCCTAGAGATATGAAGAGAAAGGTTG
1 TGAAGGGAAAGATTGAAGCCACAAC-AACAAATCTGATACCCTAGAGATATGAAGAGAAAGGTTG
* * ** * *
18791590 AAGCCGCAATGGTGAACCTTGTACCTTAGGGACGTGATGGGAAAGATTGAAGCCGCGACGGTGAA
65 AAGCCACAACGACGAACCTTGTACCTTAGGGACGTGATGGAAAAGATTGAAGCCACGACGGTGAA
*
18791655 TCTTGTACCCTAGAGATT-TGAAGGGAAAGATTAAAGCCACAATGACGAACCTTGTACCTTAGAG
130 TCTTGTACCCTAGAG-TTATGAAGGGAAAGATTAAAGCCACAACGACGAACCTTGTACCTTAGAG
18791719 ATG
194 ATG
*
18791722 TGAAGGGAAAGATTGAAGCCACAACAACAAATCTGATACCTTAGAGATATGAAGAGAAAGGTTGA
1 TGAAGGGAAAGATTGAAGCCACAACAACAAATCTGATACCCTAGAGATATGAAGAGAAAGGTTGA
* *
18791787 AGCCATAACGACGAACCTTGTACCTTAGGGACGTGATGGAAAAGATTGAAGCCACGATGGTGAAT
66 AGCCACAACGACGAACCTTGTACCTTAGGGACGTGATGGAAAAGATTGAAGCCACGACGGTGAAT
* * * *
18791852 CTTGTACCCTAGAGTTATGGAGGGAAAGGTTGAAGCCACAACGGCGAACCTTGTACCTTAGAGAT
131 CTTGTACCCTAGAGTTATGAAGGGAAAGATTAAAGCCACAACGACGAACCTTGTACCTTAGAGAT
18791917 G
196 G
* * *
18791918 TGAAGGGAAAGATTG-GGCCACAACGACGAATCT
1 TGAAGGGAAAGATTGAAGCCACAACAACAAATCT
18791951 TACACCCTGA
Statistics
Matches: 208, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
195 19 0.09
196 189 0.91
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.20
Consensus pattern (196 bp):
TGAAGGGAAAGATTGAAGCCACAACAACAAATCTGATACCCTAGAGATATGAAGAGAAAGGTTGA
AGCCACAACGACGAACCTTGTACCTTAGGGACGTGATGGAAAAGATTGAAGCCACGACGGTGAAT
CTTGTACCCTAGAGTTATGAAGGGAAAGATTAAAGCCACAACGACGAACCTTGTACCTTAGAGAT
G
Found at i:18792507 original size:39 final size:39
Alignment explanation
Indices: 18792321--18793330 Score: 581
Period size: 40 Copynumber: 25.4 Consensus size: 39
18792311 TTACAACCAC
** *
18792321 CCAATCTTTTACCCTAATTAGAGGGCAGATTGAAGACCAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAG-CAAT
* * ** *
18792361 TCATTCTTTTACCCTAATTAGAGGGCAGATTGAAGAACAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGCA-AT
* *
18792401 CAAATCTTTTACCCTAACCA-ATGAGCAGATTGAAG-ATCAT
1 CCAATCTTTTACCCTAACCAGA-GGGCAGATTGAAGCA--AT
* * **
18792441 CCGATCTCTTACCCCGACCACG-GGGCAGATTGAAGCAAT
1 CCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGCAAT
* *
18792480 CCAATCTTTTACCCTAACCAGATGGCAGATTG-AGGATTAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGCA--AT
* * * * * *
18792520 TCGATCTATTA-CCTCGACCACAAGGCAGATTGAAGCAAT
1 CCAATCTTTTACCCT-AACCAGAGGGCAGATTGAAGCAAT
*
18792559 CCAATCTTTTACCCTAACCAGAGGGCAGATT-AAGGACCAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAA-G-CAAT
* * * *
18792599 CCGATCTATTACCCCGACCATTACCCCACCATG-GGGCAGACTGAAGTAAT
1 CCAATCTTTTA---C--CC--TA----ACCA-GAGGGCAGATTGAAGCAAT
* * ** *
18792649 CTAATCTTTTATCCTAACCAGAGGGCCTATTGAAGACCAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAG-CAAT
** * *
18792689 CTTATCTCTTACCCTGACCATGA-GGCAGATTGAAGCAAT
1 CCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGCAAT
** * * ** * * *
18792728 ATAATATTTTACACTAATTAGAAGGCAGATTAAAGACCAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAG-CAAT
* * *
18792768 -CAGATCTTTTACCCTAACCAAAGGGTAGATTGAAGACCAT
1 CCA-ATCTTTTACCCTAACCAGAGGGCAGATTGAAG-CAAT
* ** *
18792808 CCGAT-TTCTTACCCCGACCATGA-GGCAGATTAAAGCAAT
1 CCAATCTT-TTACCCTAACCA-GAGGGCAGATTGAAGCAAT
* * * *
18792847 CCAATCTTTTACCTTAACTAGAGGGCAGATTGAGGACCAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAG-CAAT
* * * * * *
18792887 CCGATCTCTTACCCCT-ACTATG-GGACAAATTGAAGTAAT
1 CCAATCTTTTA-CCCTAACCA-GAGGGCAGATTGAAGCAAT
* *
18792926 CCAATCTTTTACCCTAACTAGAGGGCAGATTGAAGTAAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGCAAT
*** * *
18792965 CTGCTCTTTTACCCTAACCAAAGGGCAGATTGAAGACCAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAG-CAAT
* * * * * *
18793005 CCGATCTCTTACCCCAATCA-TGGGTAGATTGAAGCAAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGCAAT
* * * *
18793043 CCAATCTTTTACCCTAACTA-AGGGGTAAATT-AACGACCA-
1 CCAATCTTTTACCCTAACCAGA-GGGCAGATTGAA-G-CAAT
* * **
18793082 CTCGATCTCTTACCCCGACCATG-GGGCAGATTGAAGCAAT
1 C-CAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGCAAT
** *
18793122 CCAATCTTTTACCCCGATCATG-GGGCAGATTGAAGCAAT
1 CCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGCAAT
* * *
18793161 CCAATC-TTTACCCTAACTAGAGGGTAGATTGAAGACCAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAG-CAAT
* *
18793200 CCAATCTCTTACCC-AACCATGA-GGCAGATTGAAGTAAT
1 CCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGCAAT
* * *
18793238 CCAATCTTTTACCCTAACTAGAGGACAGATTGAAGACCAT
1 CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAG-CAAT
* ** *
18793278 CCAATCTCTTACCCCGACCATG-GGGCAGATTGAAACAAT
1 CCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGCAAT
18793317 CCAATCTTTTACCC
1 CCAATCTTTTACCC
18793331 CTAAAGCTAT
Statistics
Matches: 749, Mismatches: 161, Indels: 121
0.73 0.16 0.12
Matches are distributed among these distances:
37 1 0.00
38 74 0.10
39 304 0.41
40 320 0.43
41 15 0.02
43 3 0.00
45 4 0.01
47 2 0.00
50 10 0.01
51 13 0.02
52 3 0.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (39 bp):
CCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGCAAT
Found at i:18792525 original size:79 final size:79
Alignment explanation
Indices: 18792382--18793291 Score: 375
Period size: 79 Copynumber: 11.4 Consensus size: 79
18792372 CCCTAATTAG
* * *
18792382 AGGGCAGATTGAAGAACATCAAATCTTTTACCCTAACCA-ATGAGCAGATTGAAGATCATCCGAT
1 AGGGCAGATTGAAGCA-ATCCAATCTTTTACCCTAACCAGATG-GCAGATTGAGGATCATCCGAT
*
18792446 CTCTTACCCCGACCAC
64 CTATTACCCCGACCAC
* * *
18792462 GGGGCAGATTGAAGCAATCCAATCTTTTACCCTAACCAGATGGCAGATTGAGGATTATTCGATCT
1 AGGGCAGATTGAAGCAATCCAATCTTTTACCCTAACCAGATGGCAGATTGAGGATCATCCGATCT
*
18792527 ATTACCTCGACCAC
66 ATTACCCCGACCAC
* * * *
18792541 AAGGCAGATTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTAAGGACCATCCGATCT
1 AGGGCAGATTGAAGCAATCCAATCTTTTACCCTAACCAGATGGCAGATTGAGGATCATCCGATCT
18792606 ATTACCCCGACCATTACCCCACC
66 ATTACCCCG------A--CCA-C
* * * * * ** * * **
18792629 ATGGGGCAGACTGAAGTAATCTAATCTTTTATCCTAACCAGAGGGCCTATTGAAGACCATCTTAT
1 A--GGGCAGATTGAAGCAATCCAATCTTTTACCCTAACCAGATGGCAGATTGAGGATCATCCGAT
* *
18792694 CTCTTACCCTGACCA-
64 CTATTACCCCGACCAC
* ** * * ** * * * * *
18792709 TGAGGCAGATTGAAGCAATATAATATTTTACACTAATTAGAAGGCAGATTAAAGACCATCAGATC
1 AG-GGCAGATTGAAGCAATCCAATCTTTTACCCTAACCAGATGGCAGATTGAGGATCATCCGATC
* ** *
18792774 TTTTACCCTAACCAA
65 TATTACCCCGACCAC
* * * ** * * *
18792789 AGGGTAGATTGAAGACCATCCGAT-TTCTTACCCCGACCATGA-GGCAGATT-A-AAGCAATCCA
1 AGGGCAGATTGAAG-CAATCCAATCTT-TTACCCTAACCA-GATGGCAGATTGAGGATC-ATCCG
* *** * *
18792850 ATCTTTTACCTTAACTAG
62 ATCTATTACCCCGACCAC
* * * * * * * * *
18792868 AGGGCAGATTGAGGACCATCCGATCTCTTACCCCT-A-C-TATGGGACAAATTGAAG-TAATCCA
1 AGGGCAGATTGAAG-CAATCCAATCTTTTA-CCCTAACCAGAT-GG-CAGATTGAGGATCATCCG
* ** * *
18792929 ATCTTTTACCCTAACTAG
62 ATCTATTACCCCGACCAC
* *** * * * *
18792947 AGGGCAGATTGAAGTAATCTGCTCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCCGATCT
1 AGGGCAGATTGAAGCAATCCAATCTTTTACCCTAACCAGATGGCAGATTGAGGATCATCCGATCT
* * *
18793012 CTTACCCCAATCA-
66 ATTACCCCGACCAC
* * * * * * * * *
18793025 TGGGTAGATTGAAGCAATCCAATCTTTTACCCTAACTA-AGGGGTAAATTAACGACCA-CTCGAT
1 AGGGCAGATTGAAGCAATCCAATCTTTTACCCTAACCAGA-TGGCAGATTGAGGATCATC-CGAT
* *
18793088 CTCTTACCCCGACCAT
64 CTATTACCCCGACCAC
* ** * * * *
18793104 GGGGCAGATTGAAGCAATCCAATCTTTTACCCCGATCATG-GGGCAGATTGA--AGCAATCCAAT
1 AGGGCAGATTGAAGCAATCCAATCTTTTACCCTAACCA-GATGGCAGATTGAGGATC-ATCCGAT
** * *
18793166 CT-TTACCCTAACTAG
64 CTATTACCCCGACCAC
* * * * * *
18793181 AGGGTAGATTGAAGACCATCCAATCTCTTACCC-AACCATGA-GGCAGATTGAAG-TAATCCAAT
1 AGGGCAGATTGAAG-CAATCCAATCTTTTACCCTAACCA-GATGGCAGATTGAGGATCATCCGAT
* ** * *
18793243 CTTTTACCCTAACTAG
64 CTATTACCCCGACCAC
* * *
18793259 AGGACAGATTGAAGACCATCCAATCTCTTACCC
1 AGGGCAGATTGAAG-CAATCCAATCTTTTACCC
18793292 CGACCATGGG
Statistics
Matches: 661, Mismatches: 128, Indels: 84
0.76 0.15 0.10
Matches are distributed among these distances:
76 1 0.00
77 53 0.08
78 153 0.23
79 338 0.51
80 44 0.07
81 2 0.00
82 3 0.00
84 1 0.00
85 1 0.00
87 3 0.00
88 2 0.00
90 60 0.09
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (79 bp):
AGGGCAGATTGAAGCAATCCAATCTTTTACCCTAACCAGATGGCAGATTGAGGATCATCCGATCT
ATTACCCCGACCAC
Found at i:18792701 original size:90 final size:90
Alignment explanation
Indices: 18792543--18792709 Score: 228
Period size: 90 Copynumber: 1.9 Consensus size: 90
18792533 TCGACCACAA
*
18792543 GGCAGATTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTAAGGACCATCCGATCTAT
1 GGCAGACTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTAAGGACCATCCGATCTAT
18792608 TACCCCGACCATTACCCCACCATGG
66 TACCCCGACCATTACCCCACCATGG
* * * ** ** *
18792633 GGCAGACTGAAGTAATCTAATCTTTTATCCTAACCAGAGGGCCTATTGAA-GACCATCTTATCTC
1 GGCAGACTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATT-AAGGACCATCCGATCTA
*
18792697 TTACCCTGACCAT
65 TTACCCCGACCAT
18792710 GAGGCAGATT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 64 0.97
91 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (90 bp):
GGCAGACTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTAAGGACCATCCGATCTAT
TACCCCGACCATTACCCCACCATGG
Found at i:18792757 original size:169 final size:170
Alignment explanation
Indices: 18792449--18792781 Score: 402
Period size: 169 Copynumber: 2.0 Consensus size: 170
18792439 ATCCGATCTC
* * *
18792449 TTACCCCGACCACGGGGCAGATTGAAGCAATCCAATCTTTTACCCTAACCAGATGGCAGATTGAG
1 TTACCCCGACCACGGGGCAGACTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAA
** * * *
18792514 GATTATTCGATCTATTACCTCGACCACAAGGCAGATTGAAGCAATCCAATCTTTTACCCTAACCA
66 GACCATTCGATCTATTACCTCGACCACAAGGCAGATTGAAGCAATACAATATTTTACACTAACCA
* * *
18792579 GAGGGCAGATTAAGGACCATCCGATCTATTACCCCGACCA
131 GAAGGCAGATTAAAGACCATCAGATCTATTACCCCGACCA
* * * * **
18792619 TTACCCC-ACCATGGGGCAGACTGAAGTAATCTAATCTTTTATCCTAACCAGAGGGCCTATTGAA
1 TTACCCCGACCACGGGGCAGACTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAA
* * ** * *
18792683 GACCA-TCTTATCTCTTACC-CTGACCATGAGGCAGATTGAAGCAATATAATATTTTACACTAAT
66 GACCATTC-GATCTATTACCTC-GACCACAAGGCAGATTGAAGCAATACAATATTTTACACTAAC
* *
18792746 TAGAAGGCAGATTAAAGACCATCAGATCTTTTACCC
129 CAGAAGGCAGATTAAAGACCATCAGATCTATTACCC
18792782 TAACCAAAGG
Statistics
Matches: 136, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
168 3 0.02
169 126 0.93
170 7 0.05
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (170 bp):
TTACCCCGACCACGGGGCAGACTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAA
GACCATTCGATCTATTACCTCGACCACAAGGCAGATTGAAGCAATACAATATTTTACACTAACCA
GAAGGCAGATTAAAGACCATCAGATCTATTACCCCGACCA
Found at i:18793028 original size:118 final size:117
Alignment explanation
Indices: 18792850--18793196 Score: 393
Period size: 118 Copynumber: 3.0 Consensus size: 117
18792840 AAGCAATCCA
* * * * *
18792850 ATCTTTTACCTTAACTAGAGGGCAGATTGAGGACCATCCGATCTCTTACCCCTA-CTATGGGACA
1 ATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCCGATCTCTTACCCCAATC-ATGGG-CA
* * *
18792914 AATTGAAGTAATCCAATCTTTTACCCTAACTAGAGGGCAGATTGAAGTA-A-TCTG
64 GATTGAAGCAATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAG-ACACTC-G
* *
18792968 CTCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCCGATCTCTTACCCCAATCATGGGTAGA
1 ATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCCGATCTCTTACCCCAATCATGGGCAGA
*
18793033 TTGAAGCAATCCAATCTTTTACCCTAACTA-AGGGGTAAATT-AACGACCACTCG
66 TTGAAGCAATCCAATCTTTTACCCTAACTAGA-GGGTAGATTGAA-GA-CACTCG
* ** ** * * * *
18793086 ATCTCTTACCCCGACCATGGGGCAGATTGAAG-CAATCCAATCTTTTACCCCGATCATGGGGCAG
1 ATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCCGATCTCTTACCCCAATCAT-GGGCAG
18793150 ATTGAAGCAATCCAATC-TTTACCCTAACTAGAGGGTAGATTGAAGAC
65 ATTGAAGCAATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGAC
18793197 CATCCAATCT
Statistics
Matches: 197, Mismatches: 23, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
116 5 0.03
117 83 0.42
118 106 0.54
119 3 0.02
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (117 bp):
ATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCCGATCTCTTACCCCAATCATGGGCAGA
TTGAAGCAATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACACTCG
Found at i:18793142 original size:117 final size:116
Alignment explanation
Indices: 18792869--18793291 Score: 387
Period size: 117 Copynumber: 3.6 Consensus size: 116
18792859 CTTAACTAGA
* * * * * * * *
18792869 GGGCAGATTGAGGACCATCCGATCTCTTACCCCTA-CTATGGGACAAATTGAAGTAATCCAATCT
1 GGGCAGATTGAAG-CAATCCAATCTTTTACCCCAATC-ATGGGGCAGATTGAAGCAATCCAATC-
* * *** * **
18792933 TTTACCCTAACTAGAGGGCAGATTGAAGTA--ATCTGCTCTTTTACCCTAACCAAA
63 TTTACCCTAACTAGAGGGTAAATTGAAG-ACCATCCAATCTCTTACCC-AACCATG
* * * *
18792987 GGGCAGATTGAAGACCATCCGATCTCTTACCCCAATCAT-GGGTAGATTGAAGCAATCCAATCTT
1 GGGCAGATTGAAG-CAATCCAATCTTTTACCCCAATCATGGGGCAGATTGAAGCAATCCAATC-T
* *
18793051 TTACCCTAACTA-AGGGGTAAATT-AACGACCA-CTCGATCTCTTACCCCGACCATG
64 TTACCCTAACTAGA-GGGTAAATTGAA-GACCATC-CAATCTCTTA-CCCAACCATG
*
18793105 GGGCAGATTGAAGCAATCCAATCTTTTACCCCGATCATGGGGCAGATTGAAGCAATCCAATCTTT
1 GGGCAGATTGAAGCAATCCAATCTTTTACCCCAATCATGGGGCAGATTGAAGCAATCCAATCTTT
*
18793170 ACCCTAACTAGAGGGTAGATTGAAGACCATCCAATCTCTTACCCAACCATG
66 ACCCTAACTAGAGGGTAAATTGAAGACCATCCAATCTCTTACCCAACCATG
* * * * *
18793221 AGGCAGATTGAAGTAATCCAATCTTTTACCCTAA-C-TAGAGGACAGATTGAAGACCATCCAATC
1 GGGCAGATTGAAGCAATCCAATCTTTTACCCCAATCAT-G-GGGCAGATTGAAG-CAATCCAATC
18793284 TCTTACCC
63 T-TTACCC
18793292 CGACCATGGG
Statistics
Matches: 262, Mismatches: 28, Indels: 30
0.82 0.09 0.09
Matches are distributed among these distances:
114 1 0.00
115 2 0.01
116 55 0.21
117 108 0.41
118 92 0.35
119 4 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (116 bp):
GGGCAGATTGAAGCAATCCAATCTTTTACCCCAATCATGGGGCAGATTGAAGCAATCCAATCTTT
ACCCTAACTAGAGGGTAAATTGAAGACCATCCAATCTCTTACCCAACCATG
Found at i:18793257 original size:78 final size:79
Alignment explanation
Indices: 18792771--18793330 Score: 489
Period size: 79 Copynumber: 7.1 Consensus size: 79
18792761 AGACCATCAG
* * * * * *
18792771 ATCTTTTACCCTAACCAAAGGGTAGATTGAAGACCATCCGATTTCTTACCCCGACCATGAGGCAG
1 ATCTTTTACCCTAACTAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCAACCATGAGGCAG
*
18792836 ATTAAAGCAATCCA
66 ATTGAAGCAATCCA
* * * * *
18792850 ATCTTTTACCTTAACTAGAGGGCAGATTGAGGACCATCCGATCTCTTACCCCTACTATG-GGACA
1 ATCTTTTACCCTAACTAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCAACCATGAGG-CA
* *
18792914 AATTGAAGTAATCCA
65 GATTGAAGCAATCCA
*** * * *
18792929 ATCTTTTACCCTAACTAGAGGGCAGATTGAAGTA--ATCTGCTCTTTTACCCTAACCA-AAGGGC
1 ATCTTTTACCCTAACTAGAGGGCAGATTGAAG-ACCATCCAATCTCTTACCCCAACCATGA-GGC
* *
18792991 AGATTGAAGACCATCCG
64 AGATTGAAG-CAATCCA
* * * * * * * * * * *
18793008 ATCTCTTACCCCAA-TCA-TGGGTAGATTGAAG-CAATCCAATCTTTTACCCTAACTAAGGGGTA
1 ATCTTTTACCCTAACT-AGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCAACCATGAGGCA
* * *
18793070 AATT-AACGACCA-CTCG
65 GATTGAA-G-CAATC-CA
* ** * * * * * *
18793086 ATCTCTTACCCCGACCATG-GGGCAGATTGAAG-CAATCCAATCTTTTACCCCGATCATGGGGCA
1 ATCTTTTACCCTAACTA-GAGGGCAGATTGAAGACCATCCAATCTCTTACCCCAACCATGAGGCA
18793149 GATTGAAGCAATCCA
65 GATTGAAGCAATCCA
*
18793164 ATC-TTTACCCTAACTAGAGGGTAGATTGAAGACCATCCAATCTCTTA-CCCAACCATGAGGCAG
1 ATCTTTTACCCTAACTAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCAACCATGAGGCAG
*
18793227 ATTGAAGTAATCCA
66 ATTGAAGCAATCCA
* * *
18793241 ATCTTTTACCCTAACTAGAGGACAGATTGAAGACCATCCAATCTCTTACCCCGACCATGGGGCAG
1 ATCTTTTACCCTAACTAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCAACCATGAGGCAG
*
18793306 ATTGAAACAATCCA
66 ATTGAAGCAATCCA
18793320 ATCTTTTACCC
1 ATCTTTTACCC
18793331 CTAAAGCTAT
Statistics
Matches: 396, Mismatches: 65, Indels: 40
0.79 0.13 0.08
Matches are distributed among these distances:
76 1 0.00
77 53 0.13
78 146 0.37
79 193 0.49
80 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (79 bp):
ATCTTTTACCCTAACTAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCAACCATGAGGCAG
ATTGAAGCAATCCA
Found at i:18793331 original size:39 final size:39
Alignment explanation
Indices: 18792771--18793331 Score: 343
Period size: 39 Copynumber: 14.3 Consensus size: 39
18792761 AGACCATCAG
* ** * * *
18792771 ATCTTTTACCCTAACCAAAGGGTAGATTGAAGACCATCCG
1 ATCTTTTACCCCAACCATGGGGCAGATTGAA-ACAATCCA
* *
18792811 AT-TTCTTACCCCGACCATGAGGCAGATT-AAAGCAATCCA
1 ATCTT-TTACCCCAACCATGGGGCAGATTGAAA-CAATCCA
** * * * *
18792850 ATCTTTTACCTTAACTA-GAGGGCAGATTGAGGACCATCCG
1 ATCTTTTACCCCAACCATG-GGGCAGATTGA-AACAATCCA
* * * * * **
18792890 ATCTCTTACCCCTACTATGGGACAAATTGAAGTAATCCA
1 ATCTTTTACCCCAACCATGGGGCAGATTGAAACAATCCA
* * ** **
18792929 ATCTTTTACCCTAACTA-GAGGGCAGATTGAAGTAATCTG
1 ATCTTTTACCCCAACCATG-GGGCAGATTGAAACAATCCA
* * ** * *
18792968 CTCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCCG
1 ATCTTTTACCCCAACCATGGGGCAGATTGAA-ACAATCCA
* * * *
18793008 ATCTCTTACCCCAATCAT-GGGTAGATTGAAGCAATCCA
1 ATCTTTTACCCCAACCATGGGGCAGATTGAAACAATCCA
* * * * * * *
18793046 ATCTTTTACCCTAACTAAGGGGTAAATT-AACGACCA-CTCG
1 ATCTTTTACCCCAACCATGGGGCAGATTGAA--ACAATC-CA
* * *
18793086 ATCTCTTACCCCGACCATGGGGCAGATTGAAGCAATCCA
1 ATCTTTTACCCCAACCATGGGGCAGATTGAAACAATCCA
* * *
18793125 ATCTTTTACCCCGATCATGGGGCAGATTGAAGCAATCCA
1 ATCTTTTACCCCAACCATGGGGCAGATTGAAACAATCCA
* * * *
18793164 ATC-TTTACCCTAACTA-GAGGGTAGATTGAAGACCATCCA
1 ATCTTTTACCCCAACCATG-GGGCAGATTGAA-ACAATCCA
* * **
18793203 ATCTCTTA-CCCAACCATGAGGCAGATTGAAGTAATCCA
1 ATCTTTTACCCCAACCATGGGGCAGATTGAAACAATCCA
* * * *
18793241 ATCTTTTACCCTAACTA-GAGGACAGATTGAAGACCATCCA
1 ATCTTTTACCCCAACCATG-GGGCAGATTGAA-ACAATCCA
* *
18793281 ATCTCTTACCCCGACCATGGGGCAGATTGAAACAATCCA
1 ATCTTTTACCCCAACCATGGGGCAGATTGAAACAATCCA
18793320 ATCTTTTACCCC
1 ATCTTTTACCCC
18793332 TAAAGCTATA
Statistics
Matches: 396, Mismatches: 101, Indels: 49
0.73 0.18 0.09
Matches are distributed among these distances:
37 1 0.00
38 56 0.14
39 210 0.53
40 124 0.31
41 5 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (39 bp):
ATCTTTTACCCCAACCATGGGGCAGATTGAAACAATCCA
Found at i:18793976 original size:16 final size:17
Alignment explanation
Indices: 18793950--18793981 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
18793940 ATTTATTTAT
18793950 AAATGAAAATAATAAAC
1 AAATGAAAATAATAAAC
18793967 AAAT-AAAATAATAAA
1 AAATGAAAATAATAAA
18793982 ATAAACCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (17 bp):
AAATGAAAATAATAAAC
Found at i:18794078 original size:16 final size:17
Alignment explanation
Indices: 18794053--18794086 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
18794043 AATTACCTAG
*
18794053 CCCAACTTT-AACAAAA
1 CCCAAATTTAAACAAAA
18794069 CCCAAATTTAAACAAAA
1 CCCAAATTTAAACAAAA
18794086 C
1 C
18794087 AAAAAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.29, G:0.00, T:0.18
Consensus pattern (17 bp):
CCCAAATTTAAACAAAA
Found at i:18795128 original size:60 final size:60
Alignment explanation
Indices: 18795064--18795200 Score: 177
Period size: 60 Copynumber: 2.3 Consensus size: 60
18795054 TCCCCCAAAC
* *
18795064 TTTCCAAAATTTTGAATTTAACCC-CTAAATTTTCAAAAAAATTTGATTTGACCCTTAAAT
1 TTTCCAAAAATTTAAATTTAACCCTC-AAATTTTCAAAAAAATTTGATTTGACCCTTAAAT
* * * * *
18795124 TTTCCAAAAATTTAAATTTGACCCTCAAATTTTCTAAAAATTTTGATTTGACCCTTGAAG
1 TTTCCAAAAATTTAAATTTAACCCTCAAATTTTCAAAAAAATTTGATTTGACCCTTAAAT
**
18795184 TTTCTGAAAATTTAAAT
1 TTTCCAAAAATTTAAAT
18795201 CTGACCCGAT
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
60 66 0.99
61 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (60 bp):
TTTCCAAAAATTTAAATTTAACCCTCAAATTTTCAAAAAAATTTGATTTGACCCTTAAAT
Found at i:18795188 original size:30 final size:30
Alignment explanation
Indices: 18795069--18795196 Score: 148
Period size: 30 Copynumber: 4.2 Consensus size: 30
18795059 CAAACTTTCC
* * *
18795069 AAAATTTTGAATTTAACCCCTAAATTTTCAA
1 AAAATTTTG-ATTTGACCCTTAAATTTTCTA
* *
18795100 AAAAATTTGATTTGACCCTTAAATTTTCCA
1 AAAATTTTGATTTGACCCTTAAATTTTCTA
** *
18795130 AAAATTTAAATTTGACCCTCAAATTTTCTA
1 AAAATTTTGATTTGACCCTTAAATTTTCTA
* * *
18795160 AAAATTTTGATTTGACCCTTGAAGTTTCTG
1 AAAATTTTGATTTGACCCTTAAATTTTCTA
18795190 AAAATTT
1 AAAATTT
18795197 AAATCTGACC
Statistics
Matches: 82, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
30 74 0.90
31 8 0.10
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.41
Consensus pattern (30 bp):
AAAATTTTGATTTGACCCTTAAATTTTCTA
Found at i:18795206 original size:30 final size:30
Alignment explanation
Indices: 18795064--18795207 Score: 137
Period size: 30 Copynumber: 4.8 Consensus size: 30
18795054 TCCCCCAAAC
* * * * *
18795064 TTTCCAAAATTTTGAATTTAACCCCTAAAT
1 TTTCTAAAAATTTAAATTTGACCCTTAAAT
* *
18795094 TTTCAAAAAAATTT-GATTTGACCCTTAAAT
1 TTTC-TAAAAATTTAAATTTGACCCTTAAAT
* *
18795124 TTTCCAAAAATTTAAATTTGACCCTCAAAT
1 TTTCTAAAAATTTAAATTTGACCCTTAAAT
** * *
18795154 TTTCTAAAAATTTTGATTTGACCCTTGAAG
1 TTTCTAAAAATTTAAATTTGACCCTTAAAT
* *
18795184 TTTCTGAAAATTTAAATCTGACCC
1 TTTCTAAAAATTTAAATTTGACCC
18795208 GATTTTAATG
Statistics
Matches: 94, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
29 8 0.09
30 79 0.84
31 7 0.07
ACGTcount: A:0.36, C:0.17, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTCTAAAAATTTAAATTTGACCCTTAAAT
Found at i:18795275 original size:28 final size:28
Alignment explanation
Indices: 18795209--18795295 Score: 72
Period size: 29 Copynumber: 3.0 Consensus size: 28
18795199 ATCTGACCCG
*
18795209 ATTTTAATGTA-ATT-TTTTTATTTATTTT
1 ATTTT-ATGTATATTATTTTT-TTTATTAT
*
18795237 ATCCTATATGTATATTATTTTTTTTATTAT
1 AT--TTTATGTATATTATTTTTTTTATTAT
*
18795267 ATTTTATGTATA-GACTGTTTTTTTATTAT
1 ATTTTATGTATATTA-T-TTTTTTTATTAT
18795296 GTACTTGTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
27 1 0.02
28 12 0.24
29 17 0.35
30 14 0.29
31 5 0.10
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.66
Consensus pattern (28 bp):
ATTTTATGTATATTATTTTTTTTATTAT
Found at i:18800340 original size:25 final size:26
Alignment explanation
Indices: 18800302--18800397 Score: 115
Period size: 26 Copynumber: 3.7 Consensus size: 26
18800292 TTCGTGCTGA
*
18800302 TGATTATATATCAAGCTTTATGTCAG
1 TGATTATATATCAAGCTTTATGCCAG
*
18800328 TGA-TATATATCAAGCTTTGTGCCTA-
1 TGATTATATATCAAGCTTTATGCC-AG
* * *
18800353 TGATTATATATTAGGCTTTATGCCGG
1 TGATTATATATCAAGCTTTATGCCAG
*
18800379 TGATTATTTATCAAGCTTT
1 TGATTATATATCAAGCTTT
18800398 GAGCCGGTAA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
25 21 0.36
26 37 0.64
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (26 bp):
TGATTATATATCAAGCTTTATGCCAG
Found at i:18800363 original size:51 final size:52
Alignment explanation
Indices: 18800287--18800398 Score: 147
Period size: 51 Copynumber: 2.2 Consensus size: 52
18800277 TTGTGCCTAG
* *
18800287 CAAGCTTCGTGCTGATGATTATATATCAAGCTTTATGTCAGTGA-TATATAT
1 CAAGCTTTGTGCTGATGATTATATATCAAGCTTTATGCCAGTGATTATATAT
* * * *
18800338 CAAGCTTTGTGCCT-ATGATTATATATTAGGCTTTATGCCGGTGATTATTTAT
1 CAAGCTTTGTG-CTGATGATTATATATCAAGCTTTATGCCAGTGATTATATAT
18800390 CAAGCTTTG
1 CAAGCTTTG
18800399 AGCCGGTAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
51 36 0.68
52 17 0.32
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (52 bp):
CAAGCTTTGTGCTGATGATTATATATCAAGCTTTATGCCAGTGATTATATAT
Found at i:18801551 original size:21 final size:21
Alignment explanation
Indices: 18801522--18801567 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
18801512 CATAGGTGGA
*
18801522 CACATGGGCATGT-GGAGTAGC
1 CACACGGGCATGTGGGA-TAGC
*
18801543 CACACGGGCGTGTGGGATAGC
1 CACACGGGCATGTGGGATAGC
18801564 CACA
1 CACA
18801568 AAACCATGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.24, C:0.24, G:0.37, T:0.15
Consensus pattern (21 bp):
CACACGGGCATGTGGGATAGC
Found at i:18804837 original size:21 final size:21
Alignment explanation
Indices: 18804811--18804850 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
18804801 ATAATAGCAT
*
18804811 AATCCAAATATAAAGTTTAGG
1 AATCCAAACATAAAGTTTAGG
18804832 AATCCAAACATAAAGTTTA
1 AATCCAAACATAAAGTTTA
18804851 TAAGTCCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (21 bp):
AATCCAAACATAAAGTTTAGG
Found at i:18804858 original size:21 final size:20
Alignment explanation
Indices: 18804809--18804860 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
18804799 AGATAATAGC
*
18804809 ATAATCCAAATATAAAGTTT
1 ATAATCCAAACATAAAGTTT
*
18804829 AGGAATCCAAACATAAAGTTT
1 A-TAATCCAAACATAAAGTTT
18804850 ATAAGTCCAAA
1 ATAA-TCCAAA
18804861 TTACATAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.11
21 24 0.89
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (20 bp):
ATAATCCAAACATAAAGTTT
Found at i:18813233 original size:18 final size:18
Alignment explanation
Indices: 18813188--18813245 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
18813178 TGTGAAGCCC
* *
18813188 ATGTATTTATGCAAACCT
1 ATGTATTTATGCGAACTT
*
18813206 ATAT-TGTTATGCGAACTT
1 ATGTAT-TTATGCGAACTT
*
18813224 ATGTATTTATGTGAACTT
1 ATGTATTTATGCGAACTT
18813242 ATGT
1 ATGT
18813246 TATTGTGTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 1 0.03
18 31 0.94
19 1 0.03
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (18 bp):
ATGTATTTATGCGAACTT
Found at i:18821364 original size:14 final size:14
Alignment explanation
Indices: 18821345--18821417 Score: 51
Period size: 14 Copynumber: 5.2 Consensus size: 14
18821335 GAAAAAACAA
18821345 TTTTGACAGATGAG
1 TTTTGACAGATGAG
* * *
18821359 TTTTGAAAAAAT-AA
1 TTTTG-ACAGATGAG
18821373 TTTTGACAGATGAG
1 TTTTGACAGATGAG
* * * *
18821387 TTCTGAAAAAT-AA
1 TTTTGACAGATGAG
18821400 TTTTGACGAGATGAG
1 TTTTGAC-AGATGAG
18821415 TTT
1 TTT
18821418 CGTTTTGTAG
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
13 10 0.24
14 23 0.56
15 8 0.20
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (14 bp):
TTTTGACAGATGAG
Found at i:18821374 original size:28 final size:28
Alignment explanation
Indices: 18821329--18821417 Score: 135
Period size: 28 Copynumber: 3.1 Consensus size: 28
18821319 GATTATTATG
*
18821329 GTTTTGGAAAAAACAATTTTGACAGATGA
1 GTTTT-GAAAAAATAATTTTGACAGATGA
18821358 GTTTTGAAAAAATAATTTTGACAGATGA
1 GTTTTGAAAAAATAATTTTGACAGATGA
*
18821386 GTTCTG-AAAAATAATTTTGACGAGATGA
1 GTTTTGAAAAAATAATTTTGAC-AGATGA
18821414 GTTT
1 GTTT
18821418 CGTTTTGTAG
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
27 15 0.27
28 36 0.64
29 5 0.09
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.35
Consensus pattern (28 bp):
GTTTTGAAAAAATAATTTTGACAGATGA
Found at i:18830709 original size:69 final size:69
Alignment explanation
Indices: 18830522--18830712 Score: 220
Period size: 69 Copynumber: 2.8 Consensus size: 69
18830512 GTGTGTCGCA
* * * * * * *
18830522 ACAAAGCCTAGAAAACACACTAAGGAGTAGACTGCCTTCTATGTTACGACACAGCTTCTGTGTGT
1 ACAAAGCCTGGAAAACACACTAAGGAGTAGACTGTCTTCTACGTTGCGACACGGCTCCTGTGTAT
*
18830587 CATG
66 CACG
* * * * *
18830591 ACAACGTCTGAAAAACTCACTAAGGAGTAGATTGTCTTCTACGTTGCGACACGGCTCCTGTGTAT
1 ACAAAGCCTGGAAAACACACTAAGGAGTAGACTGTCTTCTACGTTGCGACACGGCTCCTGTGTAT
**
18830656 TGCG
66 CACG
* * *
18830660 ACAATGCCTGGAAAACACATTAAGGAGTAGACTGTCTTCTACGTCGCGACACG
1 ACAAAGCCTGGAAAACACACTAAGGAGTAGACTGTCTTCTACGTTGCGACACG
18830713 ACCCCTATGT
Statistics
Matches: 100, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
69 100 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.25
Consensus pattern (69 bp):
ACAAAGCCTGGAAAACACACTAAGGAGTAGACTGTCTTCTACGTTGCGACACGGCTCCTGTGTAT
CACG
Found at i:18831860 original size:59 final size:59
Alignment explanation
Indices: 18831757--18831901 Score: 182
Period size: 59 Copynumber: 2.4 Consensus size: 59
18831747 TTAGCGGACC
* * * *
18831757 ATCAGTGTCCCAAAACAAAAAAAAATAAAATTTTTATATTTGATAAAGTTGGTGTCGGCA
1 ATCAGTGTCCCAAAA-TAAAAAAAATAAAATTTTTAAATCTGATAAAGTTGGTGTCGACA
* * ** * *
18831817 ATCAGTGTCCCAAAATAAAGATAATAATTTTTTTAAATCTGATAAAGTTGTTGTCGACC
1 ATCAGTGTCCCAAAATAAAAAAAATAAAATTTTTAAATCTGATAAAGTTGGTGTCGACA
*
18831876 ATCAGTGTCTCAAAATAAAAAAAATA
1 ATCAGTGTCCCAAAATAAAAAAAATA
18831902 TTTAATTGCT
Statistics
Matches: 72, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
59 57 0.79
60 15 0.21
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.31
Consensus pattern (59 bp):
ATCAGTGTCCCAAAATAAAAAAAATAAAATTTTTAAATCTGATAAAGTTGGTGTCGACA
Found at i:18832033 original size:52 final size:54
Alignment explanation
Indices: 18831926--18832041 Score: 146
Period size: 52 Copynumber: 2.1 Consensus size: 54
18831916 ACCATCAATC
* *
18831926 TCCCAAAATAAAAAATAATTTTTTAAATTTGATAAAGTTGGTGTCAACCATTAGTG
1 TCCCAAAATAAAAAATAA-TTTTT-AATCTGATAAAGTTGGTATCAACCATTAGTG
* **
18831982 TCCCAAAATAAAAAATAA-TTTT-ATCTGATAAGGTTGGTATCGGCCATTAGTG
1 TCCCAAAATAAAAAATAATTTTTAATCTGATAAAGTTGGTATCAACCATTAGTG
*
18832034 TCCTAAAA
1 TCCCAAAA
18832042 CACCAGGAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
52 32 0.59
54 4 0.07
56 18 0.33
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.34
Consensus pattern (54 bp):
TCCCAAAATAAAAAATAATTTTTAATCTGATAAAGTTGGTATCAACCATTAGTG
Found at i:18833554 original size:37 final size:36
Alignment explanation
Indices: 18833495--18833587 Score: 114
Period size: 37 Copynumber: 2.5 Consensus size: 36
18833485 TATATGAGTA
* *
18833495 ACAAATAAATAATATATAAAATATATCATTAAAATCAT
1 ACAAATAAATAA-ATA-AAAATAAATAATTAAAATCAT
*
18833533 ACAAATTAAACAAATAAAAATAAATAATTAAAATCAT
1 ACAAA-TAAATAAATAAAAATAAATAATTAAAATCAT
*
18833570 GCAAAATAAATAAATAAA
1 AC-AAATAAATAAATAAA
18833588 TAAATATAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
37 31 0.65
38 11 0.23
39 6 0.12
ACGTcount: A:0.66, C:0.08, G:0.01, T:0.26
Consensus pattern (36 bp):
ACAAATAAATAAATAAAAATAAATAATTAAAATCAT
Found at i:18835200 original size:49 final size:49
Alignment explanation
Indices: 18835144--18835705 Score: 455
Period size: 49 Copynumber: 11.5 Consensus size: 49
18835134 TTTGCCTTTG
* * * *
18835144 CGACTTCAATTTTTCCTTCTTCGATTTTAGGGTGTAAGATCCACCGTTA
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
* * *
18835193 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGATCCGTCATTA
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
* * * * *
18835242 CGACTTTAATCTATCCCTCTTCAATTTTAGAGTGTTAGGTCCGCCGTTA
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
* * * * *
18835291 CGGCTTCAA-CTTGTTCCTCTTCAGTTTTAAGGTGTAAGATCTGCCGTTA
1 CGACTTCAATCTT-TCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
* * * *
18835340 CCACTTCAATCTTTCCCTCTTCAGTTTTAGGGTGTAAGGTCCGCCATTA
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
* * * * * * * *
18835389 CGGCTTCAACCTATCACTCTTCAATTTTAAGGTGTAAGATCTGCCATTG
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
* * * * * * * *
18835438 TGATTTTAATCTTTCCCTCTTCAGTTTTAGGGTGTTAGGTCCACCATTA
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
* * ** * ** ** *
18835487 C-AGCTTCAACCTATCCCTCTTTGATTTTAAGGTGTAAGATCTACTATTG
1 CGA-CTTCAATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
* ** * * * * * *
18835536 CGGCTTCAATCTTTCCCTCTTTGATTTTAAGGTGTTAGGTCTGTCGTTG
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
* * * * * **
18835585 CGGCTTCAACCTATCCCTCTTAAATTTTAAGGTGTAAGATCCATCGTTA
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
** * * *
18835634 CGACTTCAATCTTTCCCTCTTTGATTTTAGGGTGTTAGTTCTG-CGTTA
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
* *
18835682 CGACTTCAACCTATCCCTCTTCAA
1 CGACTTCAATCTTTCCCTCTTCAA
18835706 CTCTAGGATT
Statistics
Matches: 409, Mismatches: 100, Indels: 9
0.79 0.19 0.02
Matches are distributed among these distances:
48 28 0.07
49 378 0.92
50 3 0.01
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (49 bp):
CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGCCGTTA
Found at i:18835291 original size:98 final size:98
Alignment explanation
Indices: 18835144--18835705 Score: 583
Period size: 98 Copynumber: 5.7 Consensus size: 98
18835134 TTTGCCTTTG
* * * * * * * *
18835144 CGACTTCAATTTTTCCTTCTTCGATTTTAGGGTGTAAGATCCACCGTTACGACTTCAATCTTTCC
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCGCCGTTACGACTTCAACCTATCC
* *
18835209 CTCTTCAATTTTAGGGTGTTAGATCCGTCATTA
66 CTCTTCAATTTTAAGGTGTAAGATCCGTCATTA
* * * * * * *
18835242 CGACTTTAATCTATCCCTCTTCAATTTTAGAGTGTTAGGTCCGCCGTTACGGCTTCAACTTGTTC
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCGCCGTTACGACTTCAACCTATCC
* * * *
18835307 CTCTTCAGTTTTAAGGTGTAAGATCTGCCGTTA
66 CTCTTCAATTTTAAGGTGTAAGATCCGTCATTA
* * * * * *
18835340 CCACTTCAATCTTTCCCTCTTCAGTTTTAGGGTGTAAGGTCCGCCATTACGGCTTCAACCTATCA
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCGCCGTTACGACTTCAACCTATCC
* * *
18835405 CTCTTCAATTTTAAGGTGTAAGATCTGCCATTG
66 CTCTTCAATTTTAAGGTGTAAGATCCGTCATTA
* * * * * *
18835438 TGATTTTAATCTTTCCCTCTTCAGTTTTAGGGTGTTAGGTCCACCATTAC-AGCTTCAACCTATC
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCGCCGTTACGA-CTTCAACCTATC
** *
18835502 CCTCTTTGATTTTAAGGTGTAAGAT-C-TACTATTG
65 CCTCTTCAATTTTAAGGTGTAAGATCCGT-C-ATTA
* ** * * * * *
18835536 CGGCTTCAATCTTTCCCTCTTTGATTTTAAGGTGTTAGGTCTGTCGTTGCGGCTTCAACCTATCC
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCGCCGTTACGACTTCAACCTATCC
* * *
18835601 CTCTTAAATTTTAAGGTGTAAGATCCATCGTTA
66 CTCTTCAATTTTAAGGTGTAAGATCCGTCATTA
** * *
18835634 CGACTTCAATCTTTCCCTCTTTGATTTTAGGGTGTTAGTTCTG-CGTTACGACTTCAACCTATCC
1 CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCGCCGTTACGACTTCAACCTATCC
18835698 CTCTTCAA
66 CTCTTCAA
18835706 CTCTAGGATT
Statistics
Matches: 388, Mismatches: 70, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
97 27 0.07
98 358 0.92
99 2 0.01
100 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (98 bp):
CGACTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCGCCGTTACGACTTCAACCTATCC
CTCTTCAATTTTAAGGTGTAAGATCCGTCATTA
Found at i:18835328 original size:147 final size:146
Alignment explanation
Indices: 18835136--18835705 Score: 549
Period size: 147 Copynumber: 3.9 Consensus size: 146
18835126 TTAGGGGGTT
* * * * *
18835136 TGCCTTTGCGACTTCAATTTTTCCTTCTTC-GATTTTAGGGTGTAAGATCCACCGTTACGACTTC
1 TGCCGTTGCGGCTTCAA-CTTTCCCTCTTCAG-TTTTAAGGTGTAAGATCCACCGTTACGACTTC
* * *
18835200 AATCTTTCCCTCTTCAATTTTAGGGTGTTAGATCCGTCATTACGACTTTAATCTATCCCTCTTCA
64 AATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGTCATTACGACTTCAACCTATCCCTCTTCA
18835265 ATTTT-AGAGTGTTAGGTC
129 ATTTTAAG-GTGTTAGGTC
* * * ** *
18835283 CGCCGTTACGGCTTCAACTTGTTCCTCTTCAGTTTTAAGGTGTAAGATCTGCCGTTACCACTTCA
1 TGCCGTTGCGGCTTCAACTT-TCCCTCTTCAGTTTTAAGGTGTAAGATCCACCGTTACGACTTCA
* * * * *
18835348 ATCTTTCCCTCTTCAGTTTTAGGGTGTAAGGTCCGCCATTACGGCTTCAACCTATCACTCTTCAA
65 ATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGTCATTACGACTTCAACCTATCCCTCTTCAA
* *
18835413 TTTTAAGGTGTAAGATC
130 TTTTAAGGTGTTAGGTC
* * ** * * * * *
18835430 TGCCATTGTGATTTTAATCTTTCCCTCTTCAGTTTTAGGGTGTTAGGTCCACCATTAC-AGCTTC
1 TGCCGTTGCGGCTTCAA-CTTTCCCTCTTCAGTTTTAAGGTGTAAGATCCACCGTTACGA-CTTC
* * ** * * * * *
18835494 AACCTATCCCTCTTTGATTTTAAGGTGTAAGAT-C-TACTATTGCGGCTTCAATCTTTCCCTCTT
64 AATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGT-C-ATTACGACTTCAACCTATCCCTCTT
**
18835557 TGATTTTAAGGTGTTAGGTC
127 CAATTTTAAGGTGTTAGGTC
* * * * *
18835577 TGTCGTTGCGGCTTCAACCTATCCCTCTTAAATTTTAAGGTGTAAGATCCATCGTTACGACTTCA
1 TGCCGTTGCGGCTTCAA-CTTTCCCTCTTCAGTTTTAAGGTGTAAGATCCACCGTTACGACTTCA
** * * * *
18835642 ATCTTTCCCTCTTTGATTTTAGGGTGTTAGTTCTG-CGTTACGACTTCAACCTATCCCTCTTCAA
65 ATCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGTCATTACGACTTCAACCTATCCCTCTTCAA
18835706 CTCTAGGATT
Statistics
Matches: 334, Mismatches: 79, Indels: 21
0.77 0.18 0.05
Matches are distributed among these distances:
146 26 0.08
147 301 0.90
148 7 0.02
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (146 bp):
TGCCGTTGCGGCTTCAACTTTCCCTCTTCAGTTTTAAGGTGTAAGATCCACCGTTACGACTTCAA
TCTTTCCCTCTTCAATTTTAGGGTGTAAGATCCGTCATTACGACTTCAACCTATCCCTCTTCAAT
TTTAAGGTGTTAGGTC
Found at i:18844716 original size:18 final size:18
Alignment explanation
Indices: 18844693--18844812 Score: 132
Period size: 18 Copynumber: 6.7 Consensus size: 18
18844683 CGGAAGGAAT
*
18844693 AGCATACTGGCTCGTTTG
1 AGCATACTGGCTCATTTG
* * **
18844711 AGCATATTGGATCATAAG
1 AGCATACTGGCTCATTTG
**
18844729 AGCATACTGGCTTGTTTG
1 AGCATACTGGCTCATTTG
* *
18844747 AGCATACTAGCTCGTTTG
1 AGCATACTGGCTCATTTG
*
18844765 AGCATACTGGCTCATTTA
1 AGCATACTGGCTCATTTG
**
18844783 AGCATACTGGCTCATTCA
1 AGCATACTGGCTCATTTG
18844801 AGCATACTGGCT
1 AGCATACTGGCT
18844813 TGTAAAAGCA
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 85 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (18 bp):
AGCATACTGGCTCATTTG
Found at i:18846354 original size:44 final size:44
Alignment explanation
Indices: 18846291--18846378 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
18846281 TGGAACTAAA
18846291 GTAAGGAAACAAGTCTGTTACTGAACATGAGCGAGAATTTGTAT
1 GTAAGGAAACAAGTCTGTTACTGAACATGAGCGAGAATTTGTAT
18846335 GTAAGGAAACAAGTCTGTTACTGAACATGAGCGAGAATTTGTAT
1 GTAAGGAAACAAGTCTGTTACTGAACATGAGCGAGAATTTGTAT
18846379 ATCTTAGTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.27
Consensus pattern (44 bp):
GTAAGGAAACAAGTCTGTTACTGAACATGAGCGAGAATTTGTAT
Found at i:18850895 original size:18 final size:18
Alignment explanation
Indices: 18850856--18850935 Score: 83
Period size: 18 Copynumber: 4.6 Consensus size: 18
18850846 GGCTCGTAAA
* * *
18850856 AGCATACTTGTTTATTTG
1 AGCATACTGGCTTGTTTG
*
18850874 AGCATACTGGCTTGTTTA
1 AGCATACTGGCTTGTTTG
*
18850892 AGCATACTGGC-T-CTTG
1 AGCATACTGGCTTGTTTG
* *
18850908 AGCATACTGGCTCGTATG
1 AGCATACTGGCTTGTTTG
18850926 AGCATACTGG
1 AGCATACTGG
18850936 TTCATTTCAG
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
16 13 0.25
17 1 0.02
18 37 0.73
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.35
Consensus pattern (18 bp):
AGCATACTGGCTTGTTTG
Found at i:18850914 original size:34 final size:34
Alignment explanation
Indices: 18850838--18850935 Score: 106
Period size: 34 Copynumber: 2.8 Consensus size: 34
18850828 CAGAAGGAAT
* * ** *
18850838 AGCATATTGGCTCGTAAAAGCATACTTGTTTATTTG
1 AGCATACTGGCTCGTATAAGCATAC-TGGCT-CTTG
* *
18850874 AGCATACTGGCTTGTTTAAGCATACTGGCTCTTG
1 AGCATACTGGCTCGTATAAGCATACTGGCTCTTG
*
18850908 AGCATACTGGCTCGTATGAGCATACTGG
1 AGCATACTGGCTCGTATAAGCATACTGG
18850936 TTCATTTCAG
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
34 28 0.54
35 3 0.06
36 21 0.40
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (34 bp):
AGCATACTGGCTCGTATAAGCATACTGGCTCTTG
Found at i:18850947 original size:18 final size:18
Alignment explanation
Indices: 18850856--18850952 Score: 74
Period size: 18 Copynumber: 5.4 Consensus size: 18
18850846 GGCTCGTAAA
* *
18850856 AGCATACTTGTTTATTTG
1 AGCATACTGGTTCATTTG
* *
18850874 AGCATACTGGCTT-GTTTA
1 AGCATACTGG-TTCATTTG
*
18850892 AGCATACTGGCTC--TTG
1 AGCATACTGGTTCATTTG
* * *
18850908 AGCATACTGGCTCGTATG
1 AGCATACTGGTTCATTTG
*
18850926 AGCATACTGGTTCATTTC
1 AGCATACTGGTTCATTTG
18850944 AGCACTACT
1 AGCA-TACT
18850953 AGCCTCATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
16 15 0.23
17 1 0.02
18 42 0.66
19 6 0.09
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (18 bp):
AGCATACTGGTTCATTTG
Found at i:18855497 original size:52 final size:52
Alignment explanation
Indices: 18855387--18855618 Score: 331
Period size: 52 Copynumber: 4.5 Consensus size: 52
18855377 TTCGCATTTG
* *
18855387 ATACTCACGATGACACATAGTCATCGGACC-CTTAATCCGTAATGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * * *
18855438 ACACTCACGATGACATATAGTCATTGGACCTTATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
18855490 ATACTCACGATGACACATAGCCGTCGGACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * * *
18855542 ATACTCATGATGACGCGTAGTCATCGGACCTCATAATCCCTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
18855594 ATACTCACAATGACACGTAGTCATC
1 ATACTCACGATGACACATAGTCATC
18855619 AAACCTTTTT
Statistics
Matches: 159, Mismatches: 21, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
51 27 0.17
52 132 0.83
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:18859109 original size:21 final size:22
Alignment explanation
Indices: 18859061--18859109 Score: 52
Period size: 21 Copynumber: 2.3 Consensus size: 22
18859051 GAAACTGAAA
18859061 TTGA-GATTGTTAGGATTATGC
1 TTGATGATTGTTAGGATTATGC
18859082 TAT-ATGATTGTT-GG-TTGATGC
1 T-TGATGATTGTTAGGATT-ATGC
18859103 TTGATGA
1 TTGATGA
18859110 ACTGTTTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
20 3 0.12
21 13 0.54
22 8 0.33
ACGTcount: A:0.22, C:0.04, G:0.29, T:0.45
Consensus pattern (22 bp):
TTGATGATTGTTAGGATTATGC
Found at i:18860308 original size:17 final size:18
Alignment explanation
Indices: 18860270--18860324 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
18860260 GCCCATGTAT
* *
18860270 TTATGCACACCTATATTA
1 TTATGCAAACTTATATTA
18860288 TTATGCAAACTTATA-TA
1 TTATGCAAACTTATATTA
*
18860305 TTATGCAAACTTATGTTA
1 TTATGCAAACTTATATTA
18860323 TT
1 TT
18860325 GTGCGAATCT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
17 16 0.48
18 17 0.52
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.44
Consensus pattern (18 bp):
TTATGCAAACTTATATTA
Found at i:18870079 original size:34 final size:35
Alignment explanation
Indices: 18870041--18870116 Score: 127
Period size: 34 Copynumber: 2.2 Consensus size: 35
18870031 ATATATTGAA
* *
18870041 ATTACATTTCAATTTAGATAATATAAAATATATT-
1 ATTACATTTCAATTTAGAAAATATAAAACATATTC
18870075 ATTACATTTCAATTTAGAAAATATAAAACATATTC
1 ATTACATTTCAATTTAGAAAATATAAAACATATTC
18870110 ATTACAT
1 ATTACAT
18870117 GCTTTACAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 32 0.82
35 7 0.18
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (35 bp):
ATTACATTTCAATTTAGAAAATATAAAACATATTC
Found at i:18877337 original size:43 final size:43
Alignment explanation
Indices: 18877290--18877400 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 43
18877280 GAAGGATAAA
18877290 ACAAAGAAAGAAGCTACGTGGAAA-AAACCACATTCAAGAA-ACG
1 ACAAAGAAAGAAGCTACGTGGAAACAAA-CACATTCAAGAACA-G
* * **
18877333 ACAAA-AGAAGAAGATACGT-GAAAGCAAACACTTTCAAGTTCAG
1 ACAAAGA-AAGAAGCTACGTGGAAA-CAAACACATTCAAGAACAG
*
18877376 ACAAAGAAAGAAGCTATGTGGAAAC
1 ACAAAGAAAGAAGCTACGTGGAAAC
18877401 TATCCATTAC
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
42 5 0.09
43 42 0.75
44 9 0.16
ACGTcount: A:0.51, C:0.16, G:0.20, T:0.13
Consensus pattern (43 bp):
ACAAAGAAAGAAGCTACGTGGAAACAAACACATTCAAGAACAG
Found at i:18879642 original size:160 final size:163
Alignment explanation
Indices: 18879456--18879748 Score: 386
Period size: 160 Copynumber: 1.8 Consensus size: 163
18879446 CAAAATCTTC
* * *
18879456 AAACATTTTAATTTTCCCTCAAAACTTTTA-TTTCGTTCTCATC-CAACCCCTCATCCACTCCAA
1 AAACATTTTAATTTTCCCTCAAAACTTTTACTTTC-CTCCCATCTC-ACCCCTCATCCACCCCAA
18879519 ACTCATT-T-CCCTCCAAATTCTTTTTTTAAAAT-TTTT-CCTCCAAAATTTTACTCTC-CCATT
64 ACTCATTCTCCCCTCCAAA-T-TTTTTTTAAAATATTTTCCCTCCAAAATTTTACTC-CACCATT
18879579 TACTTTCCCAAAAAATTTTTTTTTTCCAAAAGCCATCA
126 TACTTTCCCAAAAAATTTTTTTTTTCCAAAAGCCATCA
* * * *
18879617 AAAC-TTTTTATTTTTCCTCAAAACTTTTACTTTCCTCCCATCTCACTCCTCATCTACCCCAAAC
1 AAACATTTTAATTTTCCCTCAAAACTTTTACTTTCCTCCCATCTCACCCCTCATCCACCCCAAAC
*** *
18879681 TCATTCTCCCCTTTTAATTTTTTTTAAAATATTTTCCCTTCAAAATTTTACTCCACCATTTACTT
66 TCATTCTCCCCTCCAAATTTTTTTTAAAATATTTTCCCTCCAAAATTTTACTCCACCATTTACTT
18879746 TCC
131 TCC
18879749 TTCAAAATTT
Statistics
Matches: 114, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
160 63 0.55
161 16 0.14
162 35 0.31
ACGTcount: A:0.27, C:0.30, G:0.01, T:0.43
Consensus pattern (163 bp):
AAACATTTTAATTTTCCCTCAAAACTTTTACTTTCCTCCCATCTCACCCCTCATCCACCCCAAAC
TCATTCTCCCCTCCAAATTTTTTTTAAAATATTTTCCCTCCAAAATTTTACTCCACCATTTACTT
TCCCAAAAAATTTTTTTTTTCCAAAAGCCATCA
Found at i:18879652 original size:18 final size:20
Alignment explanation
Indices: 18879614--18879653 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
18879604 CCAAAAGCCA
*
18879614 TCAAAACTTTTTATTTTTCC
1 TCAAAACTTTTTATCTTTCC
18879634 TCAAAAC-TTTTA-CTTTCC
1 TCAAAACTTTTTATCTTTCC
18879652 TC
1 TC
18879654 CCATCTCACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 5 0.26
20 7 0.37
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (20 bp):
TCAAAACTTTTTATCTTTCC
Found at i:18883272 original size:46 final size:46
Alignment explanation
Indices: 18883219--18883311 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
18883209 AAGATCAAGA
18883219 TAAATTTGGATGAACTTTAAATTCTAGTAGTCATTAGAATTAGAGT
1 TAAATTTGGATGAACTTTAAATTCTAGTAGTCATTAGAATTAGAGT
18883265 TAAATTTGGATGAACTTTAAATTCTAGTAGTCATTAGAATTAGAGT
1 TAAATTTGGATGAACTTTAAATTCTAGTAGTCATTAGAATTAGAGT
18883311 T
1 T
18883312 CTATTTCATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.40
Consensus pattern (46 bp):
TAAATTTGGATGAACTTTAAATTCTAGTAGTCATTAGAATTAGAGT
Found at i:18891951 original size:17 final size:18
Alignment explanation
Indices: 18891929--18891962 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
18891919 GTTTATTGTT
18891929 TAGATTAATT-AGAGTTC
1 TAGATTAATTAAGAGTTC
18891946 TAGATTAATTAAGAGTT
1 TAGATTAATTAAGAGTT
18891963 TTATTTAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (18 bp):
TAGATTAATTAAGAGTTC
Found at i:18897295 original size:44 final size:44
Alignment explanation
Indices: 18897229--18897323 Score: 163
Period size: 44 Copynumber: 2.2 Consensus size: 44
18897219 CTTGAAAAAT
* * *
18897229 TACTTCAAAAATATTAGGTATCGATACCTTACTTAAGGTATCGA
1 TACTTCAAAAATATTAGCTATCGATACCCTACTCAAGGTATCGA
18897273 TACTTCAAAAATATTAGCTATCGATACCCTACTCAAGGTATCGA
1 TACTTCAAAAATATTAGCTATCGATACCCTACTCAAGGTATCGA
18897317 TACTTCA
1 TACTTCA
18897324 TAGCAAATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.33
Consensus pattern (44 bp):
TACTTCAAAAATATTAGCTATCGATACCCTACTCAAGGTATCGA
Found at i:18901292 original size:115 final size:115
Alignment explanation
Indices: 18901101--18901337 Score: 411
Period size: 115 Copynumber: 2.1 Consensus size: 115
18901091 ACAGCTTGTC
18901101 TGAGCAGGCCCATTTCACAGCTCGTGTGAGCATTACATGACATATGGGTGCTGGTCTTAGATGTC
1 TGAGCAGGCCCATTTCACAGCTCGTGTGAGCATTACATGACATATGGGTGCTGGTCTTAGATGTC
* * * * *
18901166 CTATCGATGGCTGAGATCCGGCATTTGTTGCGGATTCTCCACAGCTCATG
66 CTACCAATGGCTGAGATCCGACATTTGTTACAGATTCTCCACAGCTCATG
*
18901216 TGAGCAGGCCCATTTCACAGCTTGTGTGAGCATTACATGACATATGGGTGCTGGTCTTAGATGTC
1 TGAGCAGGCCCATTTCACAGCTCGTGTGAGCATTACATGACATATGGGTGCTGGTCTTAGATGTC
*
18901281 CTACCAATGGCTGAGATCCGACATTTGTTACAGATTCTCCACAGCTCGTG
66 CTACCAATGGCTGAGATCCGACATTTGTTACAGATTCTCCACAGCTCATG
18901331 TGAGCAG
1 TGAGCAG
18901338 TATCGTGTAG
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
115 115 1.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (115 bp):
TGAGCAGGCCCATTTCACAGCTCGTGTGAGCATTACATGACATATGGGTGCTGGTCTTAGATGTC
CTACCAATGGCTGAGATCCGACATTTGTTACAGATTCTCCACAGCTCATG
Found at i:18921090 original size:132 final size:132
Alignment explanation
Indices: 18920849--18921110 Score: 389
Period size: 132 Copynumber: 2.0 Consensus size: 132
18920839 ATTTCGGAAT
*
18920849 TTACATGACATATGGGTGCTAGTCTTAGATGTCCTACCGATGGCTAAGATCCGGCATTTGTTACG
1 TTACATGACATATGGGTGCTAGTCTTAGATGTCCTACCGATGGCTAAGATCCAGCATTTGTTACG
* *
18920914 GATTCTCCATAGCACGTGTGAGCAACATCGTGTAGCTTAACATCTCGACCCACAACTCGTGTGAG
66 GATTCTCCACAGCACGTGTGAGCAACATCGTGTAGCTTAACATCTCAACCCACAACTCGTGTGAG
18920979 CA
131 CA
* * * * * **
18920981 TTACATGTCATATGGGTGCTAGTCTTAGATGTCGTACCGATGGTTGAGATCCAGTATTTGTTGTG
1 TTACATGACATATGGGTGCTAGTCTTAGATGTCCTACCGATGGCTAAGATCCAGCATTTGTTACG
* * * * *
18921046 GATTCTCCACAGCTCGTGTGAGCAGCATCGTTTAGCTTAGCATCTCAACCCATAACTCGTGTGAG
66 GATTCTCCACAGCACGTGTGAGCAACATCGTGTAGCTTAACATCTCAACCCACAACTCGTGTGAG
18921111 TAGGCCCATT
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 115 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (132 bp):
TTACATGACATATGGGTGCTAGTCTTAGATGTCCTACCGATGGCTAAGATCCAGCATTTGTTACG
GATTCTCCACAGCACGTGTGAGCAACATCGTGTAGCTTAACATCTCAACCCACAACTCGTGTGAG
CA
Found at i:18921263 original size:158 final size:158
Alignment explanation
Indices: 18920964--18921304 Score: 457
Period size: 158 Copynumber: 2.2 Consensus size: 158
18920954 CATCTCGACC
* * * * *
18920964 CACAACTCGTGTGAGCATTACATGTCATATGGGTGCTAGTCTTAGATGTCGTACCGATGGTTGAG
1 CACAGCTCGTGTGAGCATTACATGACATATGGGTACTAGTCTTAGATGTCCTACCGATGGCTGAG
* *** * *
18921029 ATCCAGTATTTGTTGTGGATTCTCCACAGCTCGTGTGAGCAGCATCGTTTAGCTTAGCATCTCAA
66 ATCCAGCATTTGTTACAGATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCTTAACATCTCAA
* *
18921094 CCCATAACTCGTGTGAGTAGGCCCATTT
131 CCCACAACTCGTGTGAGCAGGCCCATTT
*
18921122 CACAGCTCGTGTGAGCATTACATGACATATGGGTACTGGTCTTAGATGTCCTACCGATGGCTGAG
1 CACAGCTCGTGTGAGCATTACATGACATATGGGTACTAGTCTTAGATGTCCTACCGATGGCTGAG
** * * * *
18921187 ATCTGGCATTTGTTACAGATTCTCCACAGCTTGTGTGAGTAGCATCGTGTAGTTTAACATCTCGA
66 ATCCAGCATTTGTTACAGATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCTTAACATCTCAA
* *
18921252 CTCACAGCTCGTGTGAGCAGGCCCATTT
131 CCCACAACTCGTGTGAGCAGGCCCATTT
* * *
18921280 CATAGCTTGTGTGAGCAATACATGA
1 CACAGCTCGTGTGAGCATTACATGA
18921305 TATGCACACT
Statistics
Matches: 158, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
158 158 1.00
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (158 bp):
CACAGCTCGTGTGAGCATTACATGACATATGGGTACTAGTCTTAGATGTCCTACCGATGGCTGAG
ATCCAGCATTTGTTACAGATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCTTAACATCTCAA
CCCACAACTCGTGTGAGCAGGCCCATTT
Found at i:18925040 original size:18 final size:18
Alignment explanation
Indices: 18925017--18925051 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18925007 TCAAAAAGTC
*
18925017 ATATTTTATTATTTTTTG
1 ATATTTTATAATTTTTTG
*
18925035 ATATTTTCTAATTTTTT
1 ATATTTTATAATTTTTT
18925052 CTTGTTTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (18 bp):
ATATTTTATAATTTTTTG
Found at i:18927285 original size:19 final size:21
Alignment explanation
Indices: 18927249--18927287 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
18927239 TAAGAACTTA
*
18927249 TGAATATTTTTATTTATTTTT
1 TGAATATTTTTATATATTTTT
18927270 TGAAT-TTTTTA-ATATTTT
1 TGAATATTTTTATATATTTT
18927288 GTTAGGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 6 0.35
21 5 0.29
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (21 bp):
TGAATATTTTTATATATTTTT
Found at i:18934763 original size:17 final size:17
Alignment explanation
Indices: 18934741--18934773 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18934731 TAACTCTTAG
18934741 AATTTAAAAATATAAAA
1 AATTTAAAAATATAAAA
18934758 AATTTAAAAATATAAA
1 AATTTAAAAATATAAA
18934774 TTTAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AATTTAAAAATATAAAA
Found at i:18934819 original size:30 final size:30
Alignment explanation
Indices: 18934758--18934820 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
18934748 AAATATAAAA
* *
18934758 AATTTAAAAATATAAATTTAATTTTAACAT
1 AATTAAAAAATATAAATTTAATTTCAACAT
* *
18934788 AATTAAAAAAT-TAAAATTTACTTTCACCAT
1 AATTAAAAAATAT-AAATTTAATTTCAACAT
18934818 AAT
1 AAT
18934821 AATATTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (30 bp):
AATTAAAAAATATAAATTTAATTTCAACAT
Found at i:18948042 original size:106 final size:109
Alignment explanation
Indices: 18947799--18948042 Score: 358
Period size: 108 Copynumber: 2.3 Consensus size: 109
18947789 AAAAACGAAA
* * *
18947799 CCTC-GGACCAATAACA-TTCCAATCAGTAAACAGCGGCTAATTTTAAATACTACTAGAAACTCA
1 CCTCAGGACCAATAA-ATTTCCAATCAGTAAACAACAGCTAATTTTAAACACTACTAGAAACTCA
*
18947862 GCATTTACAATAAAGAAAACCAAATAATCAATGAAAATTAACAAT
65 GCATTTACAATAAAGAAAACCAAATAATCAATGAAAATCAACAAT
* *
18947907 CCTCA-GACCAAT-GATATTCCATTCAGTAAACAACAGCTAATTTTAAACACTACTAGAAACTCA
1 CCTCAGGACCAATAAAT-TTCCAATCAGTAAACAACAGCTAATTTTAAACACTACTAGAAACTCA
*
18947970 GCATTTACAAT-AA-AAAACCAAATAATCAATTAAAATCAACAAT
65 GCATTTACAATAAAGAAAACCAAATAATCAATGAAAATCAACAAT
18948013 CCT-AGGACCAATAAATTTCCAATCAGTAAA
1 CCTCAGGACCAATAAATTTCCAATCAGTAAA
18948043 TTAATAGACC
Statistics
Matches: 122, Mismatches: 9, Indels: 12
0.85 0.06 0.08
Matches are distributed among these distances:
105 1 0.01
106 52 0.43
107 4 0.03
108 65 0.53
ACGTcount: A:0.47, C:0.21, G:0.08, T:0.24
Consensus pattern (109 bp):
CCTCAGGACCAATAAATTTCCAATCAGTAAACAACAGCTAATTTTAAACACTACTAGAAACTCAG
CATTTACAATAAAGAAAACCAAATAATCAATGAAAATCAACAAT
Found at i:18948612 original size:19 final size:19
Alignment explanation
Indices: 18948568--18948621 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
18948558 ATTTATAATT
*
18948568 TTTAAAAATACAT-AAAAA
1 TTTAAAAATATATAAAAAA
*
18948586 TTCAAAAATTATATAAAAAA
1 TTTAAAAA-TATATAAAAAA
18948606 TTTAAAAATAT-TAAAA
1 TTTAAAAATATATAAAA
18948622 TAAAAATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 12 0.39
19 7 0.23
20 12 0.39
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (19 bp):
TTTAAAAATATATAAAAAA
Found at i:18952186 original size:27 final size:27
Alignment explanation
Indices: 18952133--18952187 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
18952123 AGTAGCAGAA
* * *
18952133 CAAACATTATATGCAGTCTCTCAGTTT
1 CAAACATTATATGCAATCACCCAGTTT
*
18952160 CAAACATTATATGCAATCACCCGGTTT
1 CAAACATTATATGCAATCACCCAGTTT
18952187 C
1 C
18952188 TCTCATAAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (27 bp):
CAAACATTATATGCAATCACCCAGTTT
Found at i:18954214 original size:34 final size:34
Alignment explanation
Indices: 18954176--18954248 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
18954166 ATTTAATCCT
* *
18954176 TCTTCCTTTTTCATCCACTACGACTTATTTCTCA
1 TCTTCCTTTTTCATCCACTACCACTTATTCCTCA
*
18954210 TCTTCCTTTTTCATCCCCTACCACTTATTCCTCA
1 TCTTCCTTTTTCATCCACTACCACTTATTCCTCA
18954244 TCTTC
1 TCTTC
18954249 AGCCACTATC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.15, C:0.37, G:0.01, T:0.47
Consensus pattern (34 bp):
TCTTCCTTTTTCATCCACTACCACTTATTCCTCA
Found at i:18955769 original size:12 final size:12
Alignment explanation
Indices: 18955752--18955794 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
18955742 TTTTTCACTC
18955752 AATTTCTCTCTA
1 AATTTCTCTCTA
* *
18955764 AATTTCAC-ATA
1 AATTTCTCTCTA
18955775 AATTTCTCTCTA
1 AATTTCTCTCTA
*
18955787 AATCTCTC
1 AATTTCTC
18955795 AAAATTCTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44
Consensus pattern (12 bp):
AATTTCTCTCTA
Found at i:18955780 original size:23 final size:22
Alignment explanation
Indices: 18955744--18955789 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
18955734 CTTTTATTTT
*
18955744 TTTCACTCAATTTCTCTCTAAA
1 TTTCACTAAATTTCTCTCTAAA
18955766 TTTCACATAAATTTCTCTCTAAA
1 TTTCAC-TAAATTTCTCTCTAAA
18955789 T
1 T
18955790 CTCTCAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.46
Consensus pattern (22 bp):
TTTCACTAAATTTCTCTCTAAA
Found at i:18955946 original size:18 final size:17
Alignment explanation
Indices: 18955921--18956040 Score: 60
Period size: 18 Copynumber: 7.1 Consensus size: 17
18955911 TGGTAAGAGT
18955921 TAATTTTAATTTTTTTA
1 TAATTTTAATTTTTTTA
18955938 TATATTTT-A--TTTTT-
1 TA-ATTTTAATTTTTTTA
18955952 TAATTTTAA---TTTTA
1 TAATTTTAATTTTTTTA
18955966 TAA-TTTAATTATCTTTTA
1 TAATTTTAATT-T-TTTTA
18955984 GTAATATTTAATTATTTTATA
1 -TAAT-TTTAATT-TTTT-TA
* *
18956005 TTATTTT-ATAATTTTTA
1 TAATTTTAAT-TTTTTTA
**
18956022 TTTTTTTATATTTTTTTA
1 TAATTTTA-ATTTTTTTA
18956040 T
1 T
18956041 GTGAATAACC
Statistics
Matches: 84, Mismatches: 4, Indels: 29
0.72 0.03 0.25
Matches are distributed among these distances:
13 14 0.17
14 6 0.07
15 5 0.06
17 11 0.13
18 23 0.27
19 8 0.10
20 6 0.07
21 11 0.13
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.69
Consensus pattern (17 bp):
TAATTTTAATTTTTTTA
Found at i:18955972 original size:13 final size:13
Alignment explanation
Indices: 18955933--18955975 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
18955923 ATTTTAATTT
*
18955933 TTTTATATATTTTA
1 TTTTATA-ATTTAA
*
18955947 TTTTTTAATTTTAA
1 TTTTATAA-TTTAA
18955961 TTTTATAATTTAA
1 TTTTATAATTTAA
18955974 TT
1 TT
18955976 ATCTTTTAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 8 0.32
14 17 0.68
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTATAATTTAA
Found at i:18956007 original size:10 final size:10
Alignment explanation
Indices: 18955990--18956040 Score: 56
Period size: 10 Copynumber: 5.5 Consensus size: 10
18955980 TTTAGTAATA
18955990 TTTA-ATTAT
1 TTTATATTAT
18955999 TTTATATTAT
1 TTTATATTAT
18956009 TTTATA--AT
1 TTTATATTAT
*
18956017 TTT-TATTTT
1 TTTATATTAT
*
18956026 TTTATATTTT
1 TTTATATTAT
18956036 TTTAT
1 TTTAT
18956041 GTGAATAACC
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
7 2 0.05
8 5 0.14
9 8 0.22
10 22 0.59
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTATATTAT
Found at i:18956027 original size:8 final size:9
Alignment explanation
Indices: 18955998--18956037 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
18955988 TATTTAATTA
18955998 TTTTATATT
1 TTTTATATT
*
18956007 ATTTTATAAT
1 -TTTTATATT
18956017 TTTTAT-TT
1 TTTTATATT
18956025 TTTTATATT
1 TTTTATATT
18956034 TTTT
1 TTTT
18956038 TATGTGAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
8 7 0.26
9 12 0.44
10 8 0.30
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTATATT
Found at i:18956038 original size:27 final size:28
Alignment explanation
Indices: 18955979--18956040 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 28
18955969 TTTAATTATC
18955979 TTTTAGTAATATTTAATTATTTTATATTA
1 TTTTA-TAATATTTAATTATTTTATATTA
* * *
18956008 TTTTATAAT-TTTTATTTTTTTATATTT
1 TTTTATAATATTTAATTATTTTATATTA
18956035 TTTTAT
1 TTTTAT
18956041 GTGAATAACC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 21 0.70
28 4 0.13
29 5 0.17
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (28 bp):
TTTTATAATATTTAATTATTTTATATTA
Found at i:18956795 original size:13 final size:12
Alignment explanation
Indices: 18956779--18956808 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
18956769 TAGATTTAAA
18956779 TTAAAATTTTAT
1 TTAAAATTTTAT
18956791 GTTAAAATTTTAT
1 -TTAAAATTTTAT
18956804 TTAAA
1 TTAAA
18956809 TAGGTGGAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (12 bp):
TTAAAATTTTAT
Found at i:18957739 original size:18 final size:18
Alignment explanation
Indices: 18957713--18957755 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
18957703 GGGAACTCAA
* *
18957713 CTCAGTTCCAATTGCCAC
1 CTCAATTCCAATCGCCAC
18957731 CTCAATTCCAATCGCCAC
1 CTCAATTCCAATCGCCAC
18957749 CTCAATT
1 CTCAATT
18957756 TCCACCGCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.40, G:0.07, T:0.28
Consensus pattern (18 bp):
CTCAATTCCAATCGCCAC
Found at i:18957764 original size:18 final size:18
Alignment explanation
Indices: 18957726--18957764 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
18957716 AGTTCCAATT
*
18957726 GCCACCTCAATTCCAATC
1 GCCACCTCAATTCCAACC
18957744 GCCACCTCAATTTCC-ACC
1 GCCACCTCAA-TTCCAACC
18957762 GCC
1 GCC
18957765 TTATGGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.23, C:0.49, G:0.08, T:0.21
Consensus pattern (18 bp):
GCCACCTCAATTCCAACC
Found at i:18957981 original size:13 final size:12
Alignment explanation
Indices: 18957941--18957977 Score: 58
Period size: 11 Copynumber: 3.1 Consensus size: 12
18957931 CCGACCCCTC
18957941 ATATTAATTTTTA
1 ATATT-ATTTTTA
18957954 ATATTATTTTT-
1 ATATTATTTTTA
18957965 ATATTATTTTTA
1 ATATTATTTTTA
18957977 A
1 A
18957978 ATATATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 11 0.48
12 7 0.30
13 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATATTATTTTTA
Found at i:18958120 original size:30 final size:30
Alignment explanation
Indices: 18958086--18958150 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
18958076 ATAGATGCAC
18958086 ACAAATGCCTCTAAAATAATAACAAAATTA
1 ACAAATGCCTCTAAAATAATAACAAAATTA
18958116 ACAAATGCCTCTAAAATAATAACAAAATTA
1 ACAAATGCCTCTAAAATAATAACAAAATTA
18958146 A-AAAT
1 ACAAAT
18958151 AAAATAAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 4 0.11
30 31 0.89
ACGTcount: A:0.58, C:0.15, G:0.03, T:0.23
Consensus pattern (30 bp):
ACAAATGCCTCTAAAATAATAACAAAATTA
Found at i:18958959 original size:6 final size:6
Alignment explanation
Indices: 18958948--18958972 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
18958938 ATTAATCAGT
18958948 TTATAA TTATAA TTATAA TTATAA T
1 TTATAA TTATAA TTATAA TTATAA T
18958973 GACTAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTATAA
Found at i:18959285 original size:21 final size:21
Alignment explanation
Indices: 18959245--18959285 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
18959235 ATACCAAAAC
*
18959245 CCTAATTTTAAAAACTTAAAT
1 CCTAATTTTAAAAACCTAAAT
18959266 CCTAA-TTTAAAAACCCTAAA
1 CCTAATTTTAAAAA-CCTAAA
18959286 CATAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.32
Consensus pattern (21 bp):
CCTAATTTTAAAAACCTAAAT
Done.