Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 69 of 126
Found at i:20259743 original size:19 final size:19
Alignment explanation
Indices: 20259710--20259850 Score: 74
Period size: 19 Copynumber: 7.3 Consensus size: 19
20259700 AATATTAAAA
* * *
20259710 ATAAAAATAAATAAAAATT
1 ATAAAAATTATTAAAATTT
*
20259729 ATAAAAATTATTAAATTTT
1 ATAAAAATTATTAAAATTT
20259748 AATAAAAA-TA-TAAAATTT
1 -ATAAAAATTATTAAAATTT
* **
20259766 AATAAAAATTA-GAATTTTTTT
1 -ATAAAAATTATTAA--AATTT
* * *
20259787 ATAAAAATCATAAAAAATT
1 ATAAAAATTATTAAAATTT
* *
20259806 ATAAAATATT-GTAAATTTGT
1 ATAAAA-ATTATTAAAATT-T
* *
20259826 ATAAAAATTATAAAAAATT
1 ATAAAAATTATTAAAATTT
20259845 ATAAAA
1 ATAAAA
20259851 TGAGTAAAAA
Statistics
Matches: 92, Mismatches: 22, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
18 15 0.16
19 43 0.47
20 29 0.32
21 5 0.05
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (19 bp):
ATAAAAATTATTAAAATTT
Found at i:20259782 original size:17 final size:18
Alignment explanation
Indices: 20259709--20259774 Score: 71
Period size: 18 Copynumber: 3.5 Consensus size: 18
20259699 AAATATTAAA
*
20259709 AATAAAAATAAATAAAAATT
1 AATAAAAAT--ATAAAATTT
*
20259729 -ATAAAAATTATTAAATTTT
1 AATAAAAA-TA-TAAAATTT
20259748 AATAAAAATATAAAATTT
1 AATAAAAATATAAAATTT
20259766 AATAAAAAT
1 AATAAAAAT
20259775 TAGAATTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 17 0.43
19 15 0.38
20 8 0.20
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AATAAAAATATAAAATTT
Found at i:20259810 original size:39 final size:37
Alignment explanation
Indices: 20259710--20259850 Score: 142
Period size: 39 Copynumber: 3.6 Consensus size: 37
20259700 AATATTAAAA
* * *
20259710 ATAAAAATAAATAAAAATTATAAAAATTATTAAATTTTA
1 ATAAAAATATA-AAAAATTATAAAAATTA-GAAATTTTT
* *
20259749 ATAAAAATAT-AAAATTTAATAAAAATTAGAATTTTTTT
1 ATAAAAATATAAAAAATT-ATAAAAATTAGAA-ATTTTT
*
20259787 ATAAAAATCATAAAAAATTATAAAATATT-GTAAATTTGT
1 ATAAAAAT-ATAAAAAATTATAAAA-ATTAG-AAATTTTT
20259826 ATAAAAATTATAAAAAATTATAAAA
1 ATAAAAA-TATAAAAAATTATAAAA
20259851 TGAGTAAAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
37 8 0.09
38 22 0.25
39 45 0.52
40 12 0.14
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (37 bp):
ATAAAAATATAAAAAATTATAAAAATTAGAAATTTTT
Found at i:20259851 original size:8 final size:9
Alignment explanation
Indices: 20259710--20259850 Score: 77
Period size: 10 Copynumber: 14.7 Consensus size: 9
20259700 AATATTAAAA
*
20259710 ATAAAAATAA
1 ATAAAAAT-T
20259720 ATAAAAATT
1 ATAAAAATT
20259729 ATAAAAATT
1 ATAAAAATT
**
20259738 ATTAAATTTT
1 A-TAAAAATT
20259748 AATAAAAA-T
1 -ATAAAAATT
*
20259757 ATAAAATTT
1 ATAAAAATT
20259766 AATAAAAATT
1 -ATAAAAATT
* ***
20259776 AGAATTTTTTT
1 ATAA--AAATT
*
20259787 ATAAAAATC
1 ATAAAAATT
20259796 ATAAAAAATT
1 AT-AAAAATT
20259806 ATAAAATATT
1 ATAAAA-ATT
* **
20259816 GTAAATTTGT
1 ATAAAAAT-T
20259826 ATAAAAATT
1 ATAAAAATT
20259835 ATAAAAAATT
1 AT-AAAAATT
20259845 ATAAAA
1 ATAAAA
20259851 TGAGTAAAAA
Statistics
Matches: 98, Mismatches: 23, Indels: 21
0.69 0.16 0.15
Matches are distributed among these distances:
8 6 0.06
9 30 0.31
10 56 0.57
11 6 0.06
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (9 bp):
ATAAAAATT
Found at i:20259860 original size:29 final size:28
Alignment explanation
Indices: 20259797--20259861 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
20259787 ATAAAAATCA
* * **
20259797 TAAAAAATTATAAAATATTGTAAATTTG
1 TAAAAAATTATAAAAAATTATAAATGAG
20259825 TATAAAAATTATAAAAAATTATAAAATGAG
1 TA-AAAAATTATAAAAAATTAT-AAATGAG
20259855 TAAAAAA
1 TAAAAAA
20259862 ACCTTTTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 2 0.06
29 22 0.71
30 7 0.23
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (28 bp):
TAAAAAATTATAAAAAATTATAAATGAG
Found at i:20260406 original size:10 final size:11
Alignment explanation
Indices: 20260369--20260429 Score: 63
Period size: 12 Copynumber: 5.5 Consensus size: 11
20260359 AAACATCTAA
20260369 ACAACAAAAAT
1 ACAACAAAAAT
* *
20260380 AAAAAAAAAAT
1 ACAACAAAAAT
20260391 AGCAACAAAAAT
1 A-CAACAAAAAT
20260403 -CAACAAAAAT
1 ACAACAAAAAT
*
20260413 AACAATAAAAA-
1 -ACAACAAAAAT
20260424 ACAACA
1 ACAACA
20260430 CCAAAATAGT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
10 15 0.37
11 10 0.24
12 16 0.39
ACGTcount: A:0.75, C:0.15, G:0.02, T:0.08
Consensus pattern (11 bp):
ACAACAAAAAT
Found at i:20260410 original size:22 final size:22
Alignment explanation
Indices: 20260370--20260448 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 22
20260360 AACATCTAAA
* *
20260370 CAACAAAAATAAAAAAAAAATAG
1 CAACAAAAAT-CAACAAAAATAG
*
20260393 CAACAAAAATCAACAAAAATAA
1 CAACAAAAATCAACAAAAATAG
* *
20260415 CAATAAAAAACAACACCAAAATAG
1 CAACAAAAATCAACA--AAAATAG
* *
20260439 TAAAAAAAAT
1 CAACAAAAAT
20260449 AGCACAAAAC
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
22 22 0.49
23 10 0.22
24 13 0.29
ACGTcount: A:0.73, C:0.14, G:0.03, T:0.10
Consensus pattern (22 bp):
CAACAAAAATCAACAAAAATAG
Found at i:20260478 original size:21 final size:20
Alignment explanation
Indices: 20260454--20260549 Score: 74
Period size: 21 Copynumber: 4.8 Consensus size: 20
20260444 AAAATAGCAC
*
20260454 AAAACAATAATAAAAACAGTA
1 AAAACAA-AACAAAAACAGTA
*
20260475 AAAA-AAGCACAAAAACAGTAA
1 AAAACAA-AACAAAAACAGT-A
* *
20260496 AAAACAACACAAAAATAGT-
1 AAAACAAAACAAAAACAGTA
*
20260515 AAAA-AAATC-AAAACAGTA
1 AAAACAAAACAAAAACAGTA
* *
20260533 AAAACAACACCAAAACA
1 AAAACAAAACAAAAACA
20260550 ATAATATAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
17 7 0.11
18 7 0.11
19 7 0.11
20 18 0.30
21 20 0.33
22 2 0.03
ACGTcount: A:0.71, C:0.16, G:0.05, T:0.08
Consensus pattern (20 bp):
AAAACAAAACAAAAACAGTA
Found at i:20260488 original size:20 final size:19
Alignment explanation
Indices: 20260465--20260549 Score: 93
Period size: 20 Copynumber: 4.4 Consensus size: 19
20260455 AAACAATAAT
20260465 AAAAACAGTAAAAAAAGCAC
1 AAAAACAGTAAAAAAA-CAC
20260485 AAAAACAGTAAAAAACAACAC
1 AAAAACAGT-AAAAA-AACAC
* *
20260506 AAAAATAGTAAAAAAA-TC
1 AAAAACAGTAAAAAAACAC
20260524 -AAAACAGTAAAAACAACAC
1 AAAAACAGTAAAAA-AACAC
*
20260543 CAAAACA
1 AAAAACA
20260550 ATAATATAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
17 12 0.21
18 3 0.05
19 3 0.05
20 20 0.36
21 16 0.29
22 2 0.04
ACGTcount: A:0.71, C:0.16, G:0.06, T:0.07
Consensus pattern (19 bp):
AAAAACAGTAAAAAAACAC
Found at i:20260498 original size:10 final size:10
Alignment explanation
Indices: 20260465--20260536 Score: 53
Period size: 10 Copynumber: 7.4 Consensus size: 10
20260455 AAACAATAAT
20260465 AAAAACAGTA
1 AAAAACAGTA
*
20260475 AAAAA-AGCA
1 AAAAACAGTA
20260484 CAAAAACAGTA
1 -AAAAACAGTA
**
20260495 AAAAACAACA
1 AAAAACAGTA
*
20260505 CAAAAATAGTA
1 -AAAAACAGTA
20260516 AAAAA-A-T-
1 AAAAACAGTA
*
20260523 CAAAACAGTA
1 AAAAACAGTA
20260533 AAAA
1 AAAA
20260537 CAACACCAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
7 4 0.09
8 2 0.04
9 5 0.11
10 26 0.55
11 10 0.21
ACGTcount: A:0.72, C:0.12, G:0.07, T:0.08
Consensus pattern (10 bp):
AAAAACAGTA
Found at i:20260510 original size:32 final size:32
Alignment explanation
Indices: 20260442--20260510 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
20260432 AAAATAGTAA
* *
20260442 AAAAAATAGCACAAAACAATAATAAAAACAGT
1 AAAAAATAGCACAAAACAATAAAAAAAACAGC
*
20260474 AAAAAA-AGCACAAAAACAGTAAAAAACAACA-C
1 AAAAAATAGCAC-AAAACAATAAAAAA-AACAGC
20260506 AAAAA
1 AAAAA
20260511 TAGTAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 5 0.16
32 23 0.72
33 4 0.12
ACGTcount: A:0.72, C:0.14, G:0.06, T:0.07
Consensus pattern (32 bp):
AAAAAATAGCACAAAACAATAAAAAAAACAGC
Found at i:20260883 original size:19 final size:19
Alignment explanation
Indices: 20260837--20260883 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
20260827 GTATGATAAT
*
20260837 TTTTATATATTTTTTTACGA
1 TTTT-TATATTTCTTTACGA
*
20260857 ATTTTATATTTCTTTAC-A
1 TTTTTATATTTCTTTACGA
20260875 TTTTCTATA
1 TTTT-TATA
20260884 ATTTTCTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 4 0.17
19 16 0.70
20 3 0.13
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTTATATTTCTTTACGA
Found at i:20260957 original size:27 final size:28
Alignment explanation
Indices: 20260858--20260973 Score: 96
Period size: 28 Copynumber: 4.1 Consensus size: 28
20260848 TTTTTACGAA
*
20260858 TTTTATATTTCTTTACAT-TTTCTATAATTT
1 TTTTATA-TTCTATA-ATATTT-TATAATTT
* * *
20260888 TCTTATGATTTTATAAAATTTTATAA-TT
1 TTTTAT-ATTCTATAATATTTTATAATTT
20260916 TTTTATATTCCTAT-ATATTTTATAATTT
1 TTTTATATT-CTATAATATTTTATAATTT
* *
20260944 TTTCTATATT-TATAATTTTTTCTAATTT
1 TTT-TATATTCTATAATATTTTATAATTT
20260972 TT
1 TT
20260974 AATAAAATTT
Statistics
Matches: 71, Mismatches: 9, Indels: 14
0.76 0.10 0.15
Matches are distributed among these distances:
27 16 0.23
28 29 0.41
29 12 0.17
30 13 0.18
31 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.01, T:0.65
Consensus pattern (28 bp):
TTTTATATTCTATAATATTTTATAATTT
Found at i:20260963 original size:19 final size:18
Alignment explanation
Indices: 20260929--20260976 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
20260919 TATATTCCTA
20260929 TATATTTTATAATTTTTTC
1 TATA-TTTATAATTTTTTC
20260948 TATATTTATAATTTTTTC
1 TATATTTATAATTTTTTC
*
20260966 TA-ATTTTTAAT
1 TATATTTATAAT
20260977 AAAATTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
17 8 0.29
18 16 0.57
19 4 0.14
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (18 bp):
TATATTTATAATTTTTTC
Found at i:20260971 original size:10 final size:10
Alignment explanation
Indices: 20260832--20260978 Score: 55
Period size: 10 Copynumber: 15.4 Consensus size: 10
20260822 TATTAGTATG
20260832 ATAATTTTTAT
1 ATAATTTTT-T
*
20260843 ATATTTTTTT
1 ATAATTTTTT
*
20260853 ACGAA--TTTT
1 A-TAATTTTTT
20260862 AT-ATTTCTTT
1 ATAATTT-TTT
* *
20260872 A-CATTTTCT
1 ATAATTTTTT
20260881 ATAATTTTCTT
1 ATAATTTT-TT
*
20260892 ATGA--TTTT
1 ATAATTTTTT
**
20260900 ATAAAATTTT
1 ATAATTTTTT
20260910 ATAATTTTTT
1 ATAATTTTTT
**
20260920 AT-A-TTCCT
1 ATAATTTTTT
*
20260928 AT-ATATTTT
1 ATAATTTTTT
20260937 ATAATTTTTT
1 ATAATTTTTT
* *
20260947 CT-A-TATTT
1 ATAATTTTTT
20260955 ATAATTTTTT
1 ATAATTTTTT
* *
20260965 CTAATTTTTA
1 ATAATTTTTT
20260975 ATAA
1 ATAA
20260979 AATTTAAATG
Statistics
Matches: 99, Mismatches: 24, Indels: 27
0.66 0.16 0.18
Matches are distributed among these distances:
7 1 0.01
8 16 0.16
9 18 0.18
10 51 0.52
11 13 0.13
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:20263348 original size:26 final size:26
Alignment explanation
Indices: 20263319--20263434 Score: 144
Period size: 26 Copynumber: 4.5 Consensus size: 26
20263309 TCTTATGAGT
*
20263319 CTAGACAGAGTTTAGCTCTTACAAGC
1 CTAGACAGAATTTAGCTCTTACAAGC
* * *
20263345 CTAGACAAAAATTAGCTCTTACGAGAC
1 CTAGACAGAATTTAGCTCTTACAAG-C
*
20263372 C-AGACAAAATTTAGCTCTTACAAGC
1 CTAGACAGAATTTAGCTCTTACAAGC
* *
20263397 CTAGACAGAATTTAGCTCATACGAGC
1 CTAGACAGAATTTAGCTCTTACAAGC
*
20263423 CCAGACAGAATT
1 CTAGACAGAATT
20263435 ACGCTCTATT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
25 2 0.03
26 74 0.95
27 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.23
Consensus pattern (26 bp):
CTAGACAGAATTTAGCTCTTACAAGC
Found at i:20263441 original size:52 final size:52
Alignment explanation
Indices: 20263329--20263434 Score: 167
Period size: 52 Copynumber: 2.0 Consensus size: 52
20263319 CTAGACAGAG
*
20263329 TTTAGCTCTTACAAGCCTAGACAAAAATTAGCTCTTACGAGACCAGACAAAA
1 TTTAGCTCTTACAAGCCTAGACAAAAATTAGCTCATACGAGACCAGACAAAA
* * * *
20263381 TTTAGCTCTTACAAGCCTAGACAGAATTTAGCTCATACGAGCCCAGACAGAA
1 TTTAGCTCTTACAAGCCTAGACAAAAATTAGCTCATACGAGACCAGACAAAA
20263433 TT
1 TT
20263435 ACGCTCTATT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.25
Consensus pattern (52 bp):
TTTAGCTCTTACAAGCCTAGACAAAAATTAGCTCATACGAGACCAGACAAAA
Found at i:20281469 original size:18 final size:19
Alignment explanation
Indices: 20281443--20281478 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
20281433 TTAAAAATCT
20281443 GAAAAATAAACA-ATTAGA
1 GAAAAATAAACAGATTAGA
*
20281461 GAAATATAAACAGATTAG
1 GAAAAATAAACAGATTAG
20281479 TAGAGATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.61, C:0.06, G:0.14, T:0.19
Consensus pattern (19 bp):
GAAAAATAAACAGATTAGA
Found at i:20291910 original size:26 final size:26
Alignment explanation
Indices: 20291855--20291981 Score: 139
Period size: 26 Copynumber: 4.9 Consensus size: 26
20291845 AAGGCATTCT
* * * * *
20291855 AGAGGTTAACTCTTATGAGCCCATAA
1 AGAGTTTAGCTCTTACGAGCCCAGAC
20291881 AGAGTTTAGCTCTTACGAGCCC-GAAC
1 AGAGTTTAGCTCTTACGAGCCCAG-AC
* *
20291907 AGAGTTTAGCTCTTACGAGACTAGAC
1 AGAGTTTAGCTCTTACGAGCCCAGAC
* * *
20291933 AAAATTTAGCTCTTACGAGCCCAGAT
1 AGAGTTTAGCTCTTACGAGCCCAGAC
*
20291959 AGAATTTAGCTCTTACGAGCCCA
1 AGAGTTTAGCTCTTACGAGCCCA
20291982 AACAAAATTT
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 85 0.99
27 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (26 bp):
AGAGTTTAGCTCTTACGAGCCCAGAC
Found at i:20291990 original size:26 final size:26
Alignment explanation
Indices: 20291885--20292031 Score: 161
Period size: 26 Copynumber: 5.7 Consensus size: 26
20291875 CCATAAAGAG
* * *
20291885 TTTAGCTCTTACGAGCCCGAACAGAG
1 TTTAGCTCTTACGAGCCCAAACAAAA
* * *
20291911 TTTAGCTCTTACGAGACTAGACAAAA
1 TTTAGCTCTTACGAGCCCAAACAAAA
* * *
20291937 TTTAGCTCTTACGAGCCCAGATAGAA
1 TTTAGCTCTTACGAGCCCAAACAAAA
20291963 TTTAGCTCTTACGAGCCCAAACAAAA
1 TTTAGCTCTTACGAGCCCAAACAAAA
* * * *
20291989 TTTATCTCATACAAGCCTAAACAAAA
1 TTTAGCTCTTACGAGCCCAAACAAAA
20292015 TTTAGCTC-TATCGAGCC
1 TTTAGCTCTTA-CGAGCC
20292032 AGATTTCAGA
Statistics
Matches: 101, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
25 2 0.02
26 99 0.98
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (26 bp):
TTTAGCTCTTACGAGCCCAAACAAAA
Found at i:20292013 original size:78 final size:78
Alignment explanation
Indices: 20291864--20292035 Score: 213
Period size: 78 Copynumber: 2.2 Consensus size: 78
20291854 TAGAGGTTAA
* * * * * * * * *
20291864 CTCTTATGAGCCCATAAAGAGTTTAGCTCTTACGAGCCCGAACAGAGTTTAGCTCTTACGAGACT
1 CTCTTACGAGCCCAGATAGAATTTAGCTCTTACGAGCCCAAACAAAATTTAGCTCATACAAGACT
*
20291929 AGACAAAATTTAG
66 AAACAAAATTTAG
* *
20291942 CTCTTACGAGCCCAGATAGAATTTAGCTCTTACGAGCCCAAACAAAATTTATCTCATACAAGCCT
1 CTCTTACGAGCCCAGATAGAATTTAGCTCTTACGAGCCCAAACAAAATTTAGCTCATACAAGACT
20292007 AAACAAAATTTAG
66 AAACAAAATTTAG
20292020 CTC-TATCGAG-CCAGAT
1 CTCTTA-CGAGCCCAGAT
20292036 TTCAGAATTC
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
77 8 0.10
78 73 0.90
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (78 bp):
CTCTTACGAGCCCAGATAGAATTTAGCTCTTACGAGCCCAAACAAAATTTAGCTCATACAAGACT
AAACAAAATTTAG
Found at i:20294602 original size:42 final size:42
Alignment explanation
Indices: 20294483--20294630 Score: 185
Period size: 42 Copynumber: 3.5 Consensus size: 42
20294473 TTTAGCAATA
20294483 GAGTCATAAGTCTTCCTTTCAAATA-A-TCTTATGCTC-TACC
1 GAGTCATAAGTCTTCCTTT-AAATATACTCTTATGCTCATACC
* * *
20294523 GAGTCATAAGTCTTCCTTTTTAAACATACTCTCATGCTCATCCC
1 GAGTCATAAGTCTTCC--TTTAAATATACTCTTATGCTCATACC
* **
20294567 GAGTCATTAGTCTTCCTTTAAATATACTCTTATGCTCATTTC
1 GAGTCATAAGTCTTCCTTTAAATATACTCTTATGCTCATACC
*
20294609 GAGACATAAGTCTTCCTTTAAA
1 GAGTCATAAGTCTTCCTTTAAA
20294631 CATCAAGTGA
Statistics
Matches: 93, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
40 16 0.17
41 4 0.04
42 46 0.49
43 9 0.10
44 18 0.19
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (42 bp):
GAGTCATAAGTCTTCCTTTAAATATACTCTTATGCTCATACC
Found at i:20295240 original size:19 final size:19
Alignment explanation
Indices: 20295209--20295246 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
20295199 ATACGGACTC
*
20295209 AAAAACATAGAAAT-TACT
1 AAAAACAGAGAAATCTACT
20295227 AAAAACAGACGAAATCTACT
1 AAAAACAGA-GAAATCTACT
20295247 CACTCAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 5 0.29
20 4 0.24
ACGTcount: A:0.58, C:0.16, G:0.08, T:0.18
Consensus pattern (19 bp):
AAAAACAGAGAAATCTACT
Found at i:20298505 original size:25 final size:25
Alignment explanation
Indices: 20298438--20298506 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
20298428 GATTGAATTG
*
20298438 AAATTTCAATAAAAT-TAAAGGTAT
1 AAATTTAAATAAAATATAAAGGTAT
*
20298462 AAA-TTAAAAAAATATATAAAGG-AT
1 AAATTTAAATAAA-ATATAAAGGTAT
20298486 CAAATTTAAATAAAATATAAA
1 -AAATTTAAATAAAATATAAA
20298507 ATGCAGGGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
23 7 0.18
24 7 0.18
25 16 0.42
26 8 0.21
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (25 bp):
AAATTTAAATAAAATATAAAGGTAT
Found at i:20309064 original size:30 final size:30
Alignment explanation
Indices: 20309007--20309073 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
20308997 AGCCAAAAAT
* *
20309007 AATTAGGGAAGATTCTAATTGAGCCTT-GAA
1 AATTAGAG-AGATTCTAATTGAACCTTGGAA
* *
20309037 AAGTTAGAGAGATTCTAGTTTAACCTTGGAA
1 AA-TTAGAGAGATTCTAATTGAACCTTGGAA
20309068 AATTAG
1 AATTAG
20309074 GGGAATGTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
30 21 0.68
31 10 0.32
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.31
Consensus pattern (30 bp):
AATTAGAGAGATTCTAATTGAACCTTGGAA
Found at i:20313604 original size:25 final size:25
Alignment explanation
Indices: 20313568--20313628 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
20313558 ATAACTTTGT
* *
20313568 CACTAAGGCTTCCTAAATAATACGC
1 CACTAAGGCTTCCCAAATAACACGC
20313593 CACT-AGGACTTCCCAAATAACACGC
1 CACTAAGG-CTTCCCAAATAACACGC
20313618 CA-TATAGGCTT
1 CACTA-AGGCTT
20313629 TTCAGATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
24 4 0.13
25 24 0.77
26 3 0.10
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (25 bp):
CACTAAGGCTTCCCAAATAACACGC
Found at i:20323801 original size:16 final size:16
Alignment explanation
Indices: 20323764--20323815 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
20323754 AATATATATA
20323764 TTTTTTTC--TGCTTT
1 TTTTTTTCTTTGCTTT
20323778 TCTCTTTTTCTTTGCTTT
1 T-T-TTTTTCTTTGCTTT
20323796 TTTTTTTCTTCT-CTTT
1 TTTTTTTCTT-TGCTTT
20323812 TTTT
1 TTTT
20323816 ATACGTGACT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
14 1 0.03
15 1 0.03
16 22 0.67
17 2 0.06
18 7 0.21
ACGTcount: A:0.00, C:0.17, G:0.04, T:0.79
Consensus pattern (16 bp):
TTTTTTTCTTTGCTTT
Found at i:20324439 original size:17 final size:17
Alignment explanation
Indices: 20324397--20324439 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
20324387 AAATGAACTA
*
20324397 ACAAGTAAAATGCAACG
1 ACAACTAAAATGCAACG
* *
20324414 ATAACTAAAATGCAATG
1 ACAACTAAAATGCAACG
*
20324431 ACAATTAAA
1 ACAACTAAA
20324440 TGAAATGCAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.56, C:0.14, G:0.12, T:0.19
Consensus pattern (17 bp):
ACAACTAAAATGCAACG
Found at i:20332709 original size:24 final size:23
Alignment explanation
Indices: 20332674--20332719 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
20332664 AAGAGTTAAT
20332674 TTGTCAACGCAAATATAAAATAAA
1 TTGTCAACGCAAAT-TAAAATAAA
*
20332698 TTGTCAGA-GCAAATTAAGATAA
1 TTGTCA-ACGCAAATTAAAATAA
20332720 GAATAGTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 12 0.60
25 1 0.05
ACGTcount: A:0.50, C:0.11, G:0.13, T:0.26
Consensus pattern (23 bp):
TTGTCAACGCAAATTAAAATAAA
Found at i:20367400 original size:20 final size:21
Alignment explanation
Indices: 20367371--20367422 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
20367361 TTAGTCTAGC
*
20367371 AAAAATAAGAAAAAT-AGGAG
1 AAAAAAAAGAAAAATAAGGAG
*
20367391 AAAAAAAAGAAAAATAAGTAG
1 AAAAAAAAGAAAAATAAGGAG
*
20367412 AAACAAAAGAA
1 AAAAAAAAGAA
20367423 GAATGAGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.75, C:0.02, G:0.15, T:0.08
Consensus pattern (21 bp):
AAAAAAAAGAAAAATAAGGAG
Found at i:20367413 original size:21 final size:20
Alignment explanation
Indices: 20367371--20367437 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
20367361 TTAGTCTAGC
* *
20367371 AAAAATAAGAAAAATAGGAG
1 AAAAAAAAGAAAAATAGTAG
20367391 AAAAAAAAGAAAAATAAGTAG
1 AAAAAAAAGAAAAAT-AGTAG
* *
20367412 AAACAAAAGAAGAATGAGTAAG
1 AAAAAAAAGAAAAAT-AGT-AG
20367434 AAAA
1 AAAA
20367438 CATGTGAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 14 0.36
21 20 0.51
22 5 0.13
ACGTcount: A:0.72, C:0.01, G:0.18, T:0.09
Consensus pattern (20 bp):
AAAAAAAAGAAAAATAGTAG
Found at i:20379369 original size:21 final size:21
Alignment explanation
Indices: 20379325--20379371 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
20379315 GATTGGTACG
* * *
20379325 AAGGACAAAAAGAGGAAGCGC
1 AAGGACAAAAAGAAGAAACAC
*
20379346 AAGGACAAAATGAAGAAACAC
1 AAGGACAAAAAGAAGAAACAC
20379367 AAGGA
1 AAGGA
20379372 AGAAGGAGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.57, C:0.13, G:0.28, T:0.02
Consensus pattern (21 bp):
AAGGACAAAAAGAAGAAACAC
Found at i:20387128 original size:120 final size:120
Alignment explanation
Indices: 20386912--20387151 Score: 374
Period size: 120 Copynumber: 2.0 Consensus size: 120
20386902 ATATGCACAG
** *
20386912 ATACCGTATCGATGGCTGAGGTGTCGCATATGTTGCGAGTCCTCGACAACTTGTGTGAGCAGCAT
1 ATACCGTATCGATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGACAACTCGTGTGAGCAGCAT
* *
20386977 CGTATACTGGTAACAGAGTTGATACAGACATGAGAATTAAATTCTGGATTATAGC
66 CGTATACTGGTAACAGAGTTGATACAAACATGAGAATGAAATTCTGGATTATAGC
* * *
20387032 ATACCGTATCGATGGCT-AGGATACCGCATATGTTGCGAGTCCTCGATAGCTCGTGTGAGTAGCA
1 ATACCGTATCGATGGCTGAGG-TACCGCATATGTTGCGAGTCCTCGACAACTCGTGTGAGCAGCA
* *
20387096 TCGTATACTGGTAACAGAGTTGATACAAACATGAGGATGAAATTTTGGATTATAGC
65 TCGTATACTGGTAACAGAGTTGATACAAACATGAGAATGAAATTCTGGATTATAGC
20387152 TTGTGAAAGC
Statistics
Matches: 109, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
119 3 0.03
120 106 0.97
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (120 bp):
ATACCGTATCGATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGACAACTCGTGTGAGCAGCAT
CGTATACTGGTAACAGAGTTGATACAAACATGAGAATGAAATTCTGGATTATAGC
Found at i:20400165 original size:9 final size:9
Alignment explanation
Indices: 20400150--20400210 Score: 77
Period size: 9 Copynumber: 6.6 Consensus size: 9
20400140 TATTGAGGTC
20400150 GAAGAAAAA
1 GAAGAAAAA
*
20400159 AAAGAAAAGA
1 GAAGAAAA-A
20400169 TGAAGAAAAA
1 -GAAGAAAAA
*
20400179 GAAGAAAAG
1 GAAGAAAAA
20400188 GAAGAAAAA
1 GAAGAAAAA
*
20400197 GAAGAAGAA
1 GAAGAAAAA
20400206 GAAGA
1 GAAGA
20400211 TGTTGCCTCG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
9 36 0.80
10 2 0.04
11 7 0.16
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (9 bp):
GAAGAAAAA
Found at i:20400191 original size:18 final size:19
Alignment explanation
Indices: 20400150--20400207 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 19
20400140 TATTGAGGTC
*
20400150 GAAGAAAAAAAAGAAAAGA
1 GAAGAAAAAGAAGAAAAGA
20400169 TGAAGAAAAAGAAGAAAAG-
1 -GAAGAAAAAGAAGAAAAGA
20400188 GAAGAAAAAGAAGAAGAAGA
1 GAAGAAAAAGAAGAA-AAGA
20400208 AGATGTTGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 15 0.43
19 3 0.09
20 17 0.49
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (19 bp):
GAAGAAAAAGAAGAAAAGA
Found at i:20400201 original size:3 final size:3
Alignment explanation
Indices: 20400150--20400210 Score: 54
Period size: 3 Copynumber: 20.7 Consensus size: 3
20400140 TATTGAGGTC
* * * *
20400150 GAA GAA AAA AAA GAA -AA GAT GAA GAA AAA GAA GAA -AA GGAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -GAA GAA
*
20400194 AAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GA
20400211 TGTTGCCTCG
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
2 4 0.09
3 41 0.87
4 2 0.04
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (3 bp):
GAA
Found at i:20400618 original size:17 final size:17
Alignment explanation
Indices: 20400596--20400634 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
20400586 TTGCATGCAT
*
20400596 ATTTTTTTTATCATTGC
1 ATTTTTATTATCATTGC
* *
20400613 ATTTTTATTGTCCTTGC
1 ATTTTTATTATCATTGC
20400630 ATTTT
1 ATTTT
20400635 ATTTGTTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.15, C:0.13, G:0.08, T:0.64
Consensus pattern (17 bp):
ATTTTTATTATCATTGC
Found at i:20413756 original size:13 final size:13
Alignment explanation
Indices: 20413725--20413758 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
20413715 TTAACCGGCT
20413725 CGTTGACCTTGAC
1 CGTTGACCTTGAC
*
20413738 CATTGACCTTGAC
1 CGTTGACCTTGAC
*
20413751 TGTTGACC
1 CGTTGACC
20413759 GTTTATCATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.18, C:0.29, G:0.21, T:0.32
Consensus pattern (13 bp):
CGTTGACCTTGAC
Found at i:20424133 original size:9 final size:9
Alignment explanation
Indices: 20424119--20424144 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
20424109 GTTCCTATTT
20424119 TCAAGAAAA
1 TCAAGAAAA
20424128 TCAAGAAAA
1 TCAAGAAAA
20424137 TCAAGAAA
1 TCAAGAAA
20424145 TGAAATCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.12, G:0.12, T:0.12
Consensus pattern (9 bp):
TCAAGAAAA
Found at i:20428214 original size:13 final size:14
Alignment explanation
Indices: 20428185--20428214 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
20428175 TTCAGTACAT
20428185 TGACATTTAACCTC
1 TGACATTTAACCTC
20428199 TGACATTTAA-CTC
1 TGACATTTAACCTC
20428212 TGA
1 TGA
20428215 TTACATTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:20437017 original size:13 final size:12
Alignment explanation
Indices: 20436966--20437023 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 12
20436956 TCAGTCATTT
20436966 GAAAAAAAGAAA
1 GAAAAAAAGAAA
*
20436978 AAAAACAAAGTAATAA
1 GAAAA-AAAG--A-AA
*
20436994 GAAAAAGAGAAA
1 GAAAAAAAGAAA
20437006 GAAAGAAAAGAAA
1 GAAA-AAAAGAAA
20437019 GAAAA
1 GAAAA
20437024 TTTTGATAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
12 11 0.30
13 16 0.43
15 4 0.11
16 6 0.16
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.03
Consensus pattern (12 bp):
GAAAAAAAGAAA
Found at i:20438570 original size:13 final size:14
Alignment explanation
Indices: 20438541--20438570 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
20438531 TTCAGTACAT
20438541 TGACATTTAACCTC
1 TGACATTTAACCTC
20438555 TGACATTTAA-CTC
1 TGACATTTAACCTC
20438568 TGA
1 TGA
20438571 TTGCATTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:20442940 original size:13 final size:13
Alignment explanation
Indices: 20442922--20442946 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20442912 CTTAGGTTTA
20442922 GTTATTTTATTTT
1 GTTATTTTATTTT
20442935 GTTATTTTATTT
1 GTTATTTTATTT
20442947 CGGATATGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (13 bp):
GTTATTTTATTTT
Found at i:20464414 original size:21 final size:21
Alignment explanation
Indices: 20464364--20464416 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
20464354 AATAGTGTAG
20464364 ACTTCTATCGATACAAGTGAC
1 ACTTCTATCGATACAAGTGAC
* * *
20464385 AGTTATATCGATACAAGTGTC
1 ACTTCTATCGATACAAGTGAC
*
20464406 TCTTCTATCGA
1 ACTTCTATCGA
20464417 AATAAGTCTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (21 bp):
ACTTCTATCGATACAAGTGAC
Found at i:20468231 original size:10 final size:10
Alignment explanation
Indices: 20468193--20468233 Score: 55
Period size: 10 Copynumber: 3.9 Consensus size: 10
20468183 TATATTTCTT
20468193 TTTCTTTTCTC
1 TTTCTTTT-TC
*
20468204 TTTTCTTCTTC
1 -TTTCTTTTTC
20468215 TTTCTTTTTC
1 TTTCTTTTTC
20468225 TTTCTTTTT
1 TTTCTTTTT
20468234 GTGATTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 2 0.07
12 7 0.26
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:20469013 original size:21 final size:21
Alignment explanation
Indices: 20468971--20469014 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
20468961 ACCTTCCTCT
*
20468971 TTGCGCTTTTTTTTCTTATCC
1 TTGCGCTTTTCTTTCTTATCC
*
20468992 TTGCGCTTTCTCTTT-TTGTCC
1 TTGCGCTTT-TCTTTCTTATCC
20469013 TT
1 TT
20469015 TGAATCAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.02, C:0.25, G:0.11, T:0.61
Consensus pattern (21 bp):
TTGCGCTTTTCTTTCTTATCC
Found at i:20473860 original size:21 final size:21
Alignment explanation
Indices: 20473835--20473876 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
20473825 CTTAACACCT
20473835 AAATGCCATGATATTCCACTA
1 AAATGCCATGATATTCCACTA
*
20473856 AAATGTCATGATATTCCACTA
1 AAATGCCATGATATTCCACTA
20473877 TCTCAACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (21 bp):
AAATGCCATGATATTCCACTA
Found at i:20484791 original size:52 final size:52
Alignment explanation
Indices: 20484708--20485100 Score: 454
Period size: 52 Copynumber: 7.6 Consensus size: 52
20484698 ATGCAAAAAA
* * *
20484708 GTCCGATGACTATATGTCATCGTGAGTATATGAATCCTTTACGGATTATGAG
1 GTCCAATGACTTTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAG
* * *
20484760 GTCTAATGACTTTGTGTCATCGCGAGTATATGAATCC-TTACGGATTATAAG
1 GTCCAATGACTTTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAG
*
20484811 GTCCAATGACTTTGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAGAG
1 GTCCAATGACTTTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAG
** * *
20484863 GTCCGAA-GACTCTT-TGTCATATTGAGTATATGAATCCTTTATGAAATTATGAG
1 GTCC-AATGACT-TTGTGTCATCGTGAGTATATGAATCCTTTACG-GATTATGAG
** * * * *
20484916 GTCTGATGACTCTATGTTATCGTGAGTATATGAATCCTTTACGAATTATGAG
1 GTCCAATGACTTTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAG
* * * * *
20484968 GTCCGATAACTCTGTTTCATCATGAGTATATGAATCCTTTACGGATTATGAG
1 GTCCAATGACTTTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAG
* * *
20485020 GTCCAATGACTATGTGTCATCGTGAGCATAT-AGATCCTCTTACGGATT-TAAG
1 GTCCAATGACTTTGTGTCATCGTGAGTATATGA-ATCCT-TTACGGATTATGAG
* * *
20485072 GTCCGATGACTTGGTGCCATCGTGAGTAT
1 GTCCAATGACTTTGTGTCATCGTGAGTAT
20485101 TAAATGGGAA
Statistics
Matches: 292, Mismatches: 41, Indels: 16
0.84 0.12 0.05
Matches are distributed among these distances:
51 49 0.17
52 191 0.65
53 52 0.18
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (52 bp):
GTCCAATGACTTTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAG
Found at i:20484952 original size:105 final size:103
Alignment explanation
Indices: 20484708--20485082 Score: 431
Period size: 105 Copynumber: 3.6 Consensus size: 103
20484698 ATGCAAAAAA
* * *
20484708 GTCCGATGACTATATGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGT-CTAATGACT-
1 GTCCAATGACTATATGTCATCGTGAGTATATGAATCCTTTACGGATTAAGAGGTCCGAA-GACTC
** *
20484771 TTGTGTCATCGCGAGTATATGAATCC-TTACGGATTATAAG
65 TT-TGTCAT-ATGAGTATATGAATCCTTTACGGATTATGAG
* *
20484811 GTCCAATGACTTTGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAGAGGTCCGAAGACTCT
1 GTCCAATGACTATATGTCATCGTGAGTATATGAATCCTTTACGGATTAAGAGGTCCGAAGACTCT
* *
20484876 TTGTCATATTGAGTATATGAATCCTTTATGAAATTATGAG
66 TTGTCATA-TGAGTATATGAATCCTTTACG-GATTATGAG
** * * * *
20484916 GTCTGATGACTCTATGTTATCGTGAGTATATGAATCCTTTACGAATTATGAGGTCCGATA-ACTC
1 GTCCAATGACTATATGTCATCGTGAGTATATGAATCCTTTACGGATTAAGAGGTCCGA-AGACTC
20484980 TGTT-TCATCATGAGTATATGAATCCTTTACGGATTATGAG
65 T-TTGTCAT-ATGAGTATATGAATCCTTTACGGATTATGAG
* * * *
20485020 GTCCAATGACTATGTGTCATCGTGAGCATAT-AGATCCTCTTACGGATTTA-AGGTCCGATGACT
1 GTCCAATGACTATATGTCATCGTGAGTATATGA-ATCCT-TTACGGATTAAGAGGTCCGAAGACT
20485083 TGGTGCCATC
Statistics
Matches: 232, Mismatches: 29, Indels: 21
0.82 0.10 0.07
Matches are distributed among these distances:
103 75 0.32
104 58 0.25
105 95 0.41
106 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (103 bp):
GTCCAATGACTATATGTCATCGTGAGTATATGAATCCTTTACGGATTAAGAGGTCCGAAGACTCT
TTGTCATATGAGTATATGAATCCTTTACGGATTATGAG
Found at i:20489669 original size:26 final size:28
Alignment explanation
Indices: 20489618--20489670 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
20489608 TTAAATATCA
* *
20489618 ATAACTAAAATTGAAAATAATGAAAACT
1 ATAACTAAAATTGAAAAAAATAAAAACT
20489646 ATAA-TAAAATT-AAAAAAATAAAAAC
1 ATAACTAAAATTGAAAAAAATAAAAAC
20489671 GAACATGCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 12 0.52
27 7 0.30
28 4 0.17
ACGTcount: A:0.68, C:0.06, G:0.04, T:0.23
Consensus pattern (28 bp):
ATAACTAAAATTGAAAAAAATAAAAACT
Found at i:20490549 original size:15 final size:16
Alignment explanation
Indices: 20490531--20490561 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
20490521 AAAAAAAACA
20490531 TAAATTAAAAT-TAAG
1 TAAATTAAAATATAAG
20490546 TAAATTAAAATATAAG
1 TAAATTAAAATATAAG
20490562 AACTAAATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (16 bp):
TAAATTAAAATATAAG
Found at i:20492014 original size:15 final size:15
Alignment explanation
Indices: 20491994--20492026 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
20491984 TCAGATCTCG
20491994 CAGAACCAATGGAAC
1 CAGAACCAATGGAAC
*
20492009 CAGAACCAATGGAGC
1 CAGAACCAATGGAAC
20492024 CAG
1 CAG
20492027 TTAAATCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.42, C:0.27, G:0.24, T:0.06
Consensus pattern (15 bp):
CAGAACCAATGGAAC
Found at i:20503789 original size:12 final size:12
Alignment explanation
Indices: 20503772--20503796 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20503762 TTATATCAAA
20503772 AAAAAGAAGAAG
1 AAAAAGAAGAAG
20503784 AAAAAGAAGAAG
1 AAAAAGAAGAAG
20503796 A
1 A
20503797 TCTAGTTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAAGAAGAAG
Found at i:20505883 original size:12 final size:13
Alignment explanation
Indices: 20505868--20505897 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
20505858 AAAAAAACAC
20505868 AAAAGAA-GAGAG
1 AAAAGAATGAGAG
20505880 AAAAGAATGAGAG
1 AAAAGAATGAGAG
20505893 AAAAG
1 AAAAG
20505898 TGAAAGAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.03
Consensus pattern (13 bp):
AAAAGAATGAGAG
Found at i:20509036 original size:17 final size:16
Alignment explanation
Indices: 20509016--20509055 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
20509006 AACTAACAGG
20509016 TAAAATGCAACGAAAA
1 TAAAATGCAACGAAAA
* *
20509032 CTAAAATGCAATGACAA
1 -TAAAATGCAACGAAAA
20509049 TAAAATG
1 TAAAATG
20509056 AGATCCATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.57, C:0.12, G:0.12, T:0.17
Consensus pattern (16 bp):
TAAAATGCAACGAAAA
Found at i:20511436 original size:18 final size:18
Alignment explanation
Indices: 20511415--20511454 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
20511405 TTATATGAAT
**
20511415 GCATCTGATTTTGTGATC
1 GCATCTGATCCTGTGATC
*
20511433 GCATCTGGTCCTGTGATC
1 GCATCTGATCCTGTGATC
20511451 GCAT
1 GCAT
20511455 ATTATCTGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.15, C:0.23, G:0.25, T:0.38
Consensus pattern (18 bp):
GCATCTGATCCTGTGATC
Found at i:20521215 original size:23 final size:23
Alignment explanation
Indices: 20521185--20521330 Score: 177
Period size: 23 Copynumber: 6.3 Consensus size: 23
20521175 CTTATATCCA
* *
20521185 TGCTTAAATATTAATGCGATCTG
1 TGCTTAAATATTAATGTGATTTG
*
20521208 TGCTTAAATATTAATATGATTTG
1 TGCTTAAATATTAATGTGATTTG
* * *
20521231 TGCTCAAATATTAATCTGATTTA
1 TGCTTAAATATTAATGTGATTTG
*
20521254 TGCTTAAATATTAATGTGATTTAT
1 TGCTTAAATATTAATGTGATTT-G
* * *
20521278 TG-TTAAATATTAATATAATTTA
1 TGCTTAAATATTAATGTGATTTG
*
20521300 TGATTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
20521323 TGCTTAAA
1 TGCTTAAA
20521331 GAATAAAGAT
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
22 2 0.02
23 101 0.96
24 2 0.02
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.46
Consensus pattern (23 bp):
TGCTTAAATATTAATGTGATTTG
Found at i:20521309 original size:69 final size:69
Alignment explanation
Indices: 20521184--20521330 Score: 197
Period size: 69 Copynumber: 2.1 Consensus size: 69
20521174 TCTTATATCC
* * *
20521184 ATGCTTAAATATTAATGCGATCTGTGCTTAAATATTAATATGATTTGTGCTCAAATATTAATCTG
1 ATGCTTAAATATTAATGCGATCTGTGCTTAAATATTAATATAATTTATGATCAAATATTAATCTG
20521249 ATTT
66 ATTT
* * * * *
20521253 ATGCTTAAATATTAATGTGATTTATTG-TTAAATATTAATATAATTTATGATTAAATATTAATGT
1 ATGCTTAAATATTAATGCGATCT-GTGCTTAAATATTAATATAATTTATGATCAAATATTAATCT
20521317 GATTT
65 GATTT
*
20521322 GTGCTTAAA
1 ATGCTTAAA
20521331 GAATAAAGAT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
69 66 0.97
70 2 0.03
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.46
Consensus pattern (69 bp):
ATGCTTAAATATTAATGCGATCTGTGCTTAAATATTAATATAATTTATGATCAAATATTAATCTG
ATTT
Found at i:20521440 original size:36 final size:34
Alignment explanation
Indices: 20521400--20521474 Score: 114
Period size: 34 Copynumber: 2.1 Consensus size: 34
20521390 TGATGACTGT
*
20521400 TGTGAAAGTAAATATGTGGGTATGTTCTTCATGCCA
1 TGTGAAA-TAAA-ATATGGGTATGTTCTTCATGCCA
*
20521436 TGTGACATAAAATATGGGTATGTTCTTCATGCCA
1 TGTGAAATAAAATATGGGTATGTTCTTCATGCCA
20521470 TGTGA
1 TGTGA
20521475 CTGATTATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 27 0.73
35 4 0.11
36 6 0.16
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (34 bp):
TGTGAAATAAAATATGGGTATGTTCTTCATGCCA
Found at i:20527452 original size:23 final size:23
Alignment explanation
Indices: 20527422--20527520 Score: 146
Period size: 23 Copynumber: 4.3 Consensus size: 23
20527412 CTTATATCAA
*
20527422 TGCTTAAATATTAATGCGATTTG
1 TGCTTAAATATTAATGTGATTTG
*
20527445 TGCTTAAATA-TAATATGATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
20527467 TGCTCAAATATTAATGTGATTTA
1 TGCTTAAATATTAATGTGATTTG
*
20527490 TGCTTAAATATTAATGTGATTTC
1 TGCTTAAATATTAATGTGATTTG
20527513 TGCTTAAA
1 TGCTTAAA
20527521 GAATTAAGAT
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 19 0.28
23 49 0.72
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.44
Consensus pattern (23 bp):
TGCTTAAATATTAATGTGATTTG
Found at i:20527494 original size:45 final size:46
Alignment explanation
Indices: 20527422--20527516 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 46
20527412 CTTATATCAA
* * *
20527422 TGCTTAAATATTAATGCGATTTGTGCTTAAATA-TAATATGATTTG
1 TGCTCAAATATTAATGCGATTTATGCTTAAATATTAATATGATTTC
* *
20527467 TGCTCAAATATTAATGTGATTTATGCTTAAATATTAATGTGATTTC
1 TGCTCAAATATTAATGCGATTTATGCTTAAATATTAATATGATTTC
20527513 TGCT
1 TGCT
20527517 TAAAGAATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
45 30 0.68
46 14 0.32
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (46 bp):
TGCTCAAATATTAATGCGATTTATGCTTAAATATTAATATGATTTC
Found at i:20527630 original size:36 final size:35
Alignment explanation
Indices: 20527590--20527701 Score: 145
Period size: 36 Copynumber: 3.2 Consensus size: 35
20527580 TGATGACTAT
* *
20527590 TGTGAAAGTGAATATGTAGGTATGTTCTTCATGCCA
1 TGTGACAG-GAATATGTGGGTATGTTCTTCATGCCA
* *
20527626 TGTGACA-GAAAATGTGGGTATGTTCTTTATGCCA
1 TGTGACAGGAATATGTGGGTATGTTCTTCATGCCA
* *
20527660 TGTGACAGAAAATATGTGGGTATGTTCTTCATGTCA
1 TGTGACAG-GAATATGTGGGTATGTTCTTCATGCCA
20527696 TGTGAC
1 TGTGAC
20527702 TGACTATATT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
34 31 0.47
36 35 0.53
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.36
Consensus pattern (35 bp):
TGTGACAGGAATATGTGGGTATGTTCTTCATGCCA
Found at i:20527646 original size:34 final size:36
Alignment explanation
Indices: 20527600--20527701 Score: 163
Period size: 34 Copynumber: 2.9 Consensus size: 36
20527590 TGTGAAAGTG
*
20527600 AATATGTAGGTATGTTCTTCATGCCATGTGACAG-A
1 AATATGTGGGTATGTTCTTCATGCCATGTGACAGAA
*
20527635 AA-ATGTGGGTATGTTCTTTATGCCATGTGACAGAA
1 AATATGTGGGTATGTTCTTCATGCCATGTGACAGAA
*
20527670 AATATGTGGGTATGTTCTTCATGTCATGTGAC
1 AATATGTGGGTATGTTCTTCATGCCATGTGAC
20527702 TGACTATATT
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
34 29 0.48
35 5 0.08
36 27 0.44
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (36 bp):
AATATGTGGGTATGTTCTTCATGCCATGTGACAGAA
Found at i:20531964 original size:16 final size:18
Alignment explanation
Indices: 20531928--20531964 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
20531918 TTCTTAAACA
*
20531928 TATCCAACACTAATAATT
1 TATCCAACACCAATAATT
20531946 TATCCAAC-CCAAT-ATT
1 TATCCAACACCAATAATT
20531962 TAT
1 TAT
20531965 TTTATATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 4 0.22
18 8 0.44
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (18 bp):
TATCCAACACCAATAATT
Found at i:20535812 original size:16 final size:16
Alignment explanation
Indices: 20535791--20535822 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
20535781 TCCATTACTC
20535791 TATTTTTTTCTTATAA
1 TATTTTTTTCTTATAA
20535807 TATTTTTTTCTTATAA
1 TATTTTTTTCTTATAA
20535823 AACATCAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (16 bp):
TATTTTTTTCTTATAA
Found at i:20536652 original size:75 final size:75
Alignment explanation
Indices: 20536549--20536697 Score: 226
Period size: 75 Copynumber: 2.0 Consensus size: 75
20536539 GATCTCTCCT
* * *
20536549 AGACATATAGATACGCTCTTAGTCTCATCGCTTGGCACAAATTATACTTAACAGGATACCCTCTC
1 AGACATATAGATACCCTCTTAGTCTCATCGCTTGGCACAAATTATACTCAACAAGATACCCTCTC
20536614 GGTCTCATCA
66 GGTCTCATCA
* * * * *
20536624 AGACATATAGATACCCTCTTAGTCTCATCGCTTTGCACAAGTTATACTCGACAAGATACCGTCTT
1 AGACATATAGATACCCTCTTAGTCTCATCGCTTGGCACAAATTATACTCAACAAGATACCCTCTC
20536689 GGTCTCATC
66 GGTCTCATC
20536698 GCTTGTACAA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 66 1.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (75 bp):
AGACATATAGATACCCTCTTAGTCTCATCGCTTGGCACAAATTATACTCAACAAGATACCCTCTC
GGTCTCATCA
Found at i:20536739 original size:44 final size:45
Alignment explanation
Indices: 20536632--20536731 Score: 139
Period size: 44 Copynumber: 2.2 Consensus size: 45
20536622 CAAGACATAT
20536632 AGATACCCTCTTAGTCTCATCGCTTTGCACAAGTTATACTCGACA
1 AGATACCCTCTTAGTCTCATCGCTTTGCACAAGTTATACTCGACA
* * * * *
20536677 AGATACCGTCTTGGTCTCATCGC-TTGTACAAGTTATACTTGATA
1 AGATACCCTCTTAGTCTCATCGCTTTGCACAAGTTATACTCGACA
*
20536721 GGATACCCTCT
1 AGATACCCTCT
20536732 CAATCTCACC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 27 0.56
45 21 0.44
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (45 bp):
AGATACCCTCTTAGTCTCATCGCTTTGCACAAGTTATACTCGACA
Found at i:20541838 original size:16 final size:18
Alignment explanation
Indices: 20541806--20541845 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
20541796 AGGTATCTAA
20541806 AAAAATACAAAATTAA-T
1 AAAAATACAAAATTAATT
20541823 AAAAATACAAAA-TAATT
1 AAAAATACAAAATTAATT
20541840 AAAAAT
1 AAAAAT
20541846 TAACACACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 3 0.14
17 19 0.86
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAATACAAAATTAATT
Found at i:20543722 original size:2 final size:2
Alignment explanation
Indices: 20543705--20543751 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
20543695 GTTTTATCAG
*
20543705 AT AT AA AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20543746 AT AT AT
1 AT AT AT
20543752 TTTCAAGCGA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:20544227 original size:14 final size:14
Alignment explanation
Indices: 20544208--20544237 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
20544198 GAAGTACTTT
*
20544208 AAAAAGTGTTTTTG
1 AAAAAGTGATTTTG
20544222 AAAAAGTGATTTTG
1 AAAAAGTGATTTTG
20544236 AA
1 AA
20544238 TTTTTGAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (14 bp):
AAAAAGTGATTTTG
Found at i:20545048 original size:22 final size:21
Alignment explanation
Indices: 20545016--20545074 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
20545006 TCTTTGTGCT
*
20545016 TAATTACAAATGTGTTAAAATA
1 TAATTAAAAATGTGTT-AAATA
* *
20545038 TAATTAAAAATATATTAAATA
1 TAATTAAAAATGTGTTAAATA
20545059 TAA-TAAATAATGTGTT
1 TAATTAAA-AATGTGTT
20545075 CATATCTAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 4 0.13
21 14 0.45
22 13 0.42
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.39
Consensus pattern (21 bp):
TAATTAAAAATGTGTTAAATA
Found at i:20545995 original size:22 final size:19
Alignment explanation
Indices: 20545953--20546008 Score: 58
Period size: 22 Copynumber: 2.8 Consensus size: 19
20545943 TTTAAGATAA
* *
20545953 AAATATAAATTTAATTGTT
1 AAATTTAAATTTATTTGTT
*
20545972 AATACTATTAAATTTATTTTTT
1 AA-A-T-TTAAATTTATTTGTT
20545994 AAATTTAAATTTATT
1 AAATTTAAATTTATT
20546009 ATAATATCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 13 0.42
20 2 0.06
21 2 0.06
22 14 0.45
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (19 bp):
AAATTTAAATTTATTTGTT
Found at i:20554895 original size:3 final size:3
Alignment explanation
Indices: 20554887--20554937 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
20554877 TCAGTGTGAT
*
20554887 ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
20554935 ATA
1 ATA
20554938 GTTACTAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:20555952 original size:21 final size:21
Alignment explanation
Indices: 20555927--20555974 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
20555917 TAATTATTCT
*
20555927 AAAAATATATTTA-AAATTCAA
1 AAAAATATATGTATAAATT-AA
*
20555948 TAAAA-ATATGTATAAATTAA
1 AAAAATATATGTATAAATTAA
20555968 AAAAATA
1 AAAAATA
20555975 AGAAAATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAAATATATGTATAAATTAA
Found at i:20555963 original size:22 final size:20
Alignment explanation
Indices: 20555926--20555974 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
20555916 TTAATTATTC
*
20555926 TAAAAATATATTTAAAATTCAA
1 TAAAAATATATAT-AAATT-AA
*
20555948 TAAAAATATGTATAAATTAA
1 TAAAAATATATATAAATTAA
20555968 -AAAAATA
1 TAAAAATA
20555975 AGAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 2 0.08
21 5 0.20
22 11 0.44
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
TAAAAATATATATAAATTAA
Found at i:20556295 original size:8 final size:8
Alignment explanation
Indices: 20556269--20556311 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
20556259 ATGTAGGTCA
20556269 ATTTTTTT
1 ATTTTTTT
**
20556277 ATTTTAAT
1 ATTTTTTT
20556285 ATTTTTTT
1 ATTTTTTT
20556293 ATTTTTTGT
1 ATTTTTT-T
20556302 AATTTTTTT
1 -ATTTTTTT
20556311 A
1 A
20556312 ATTTAAACTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
8 20 0.69
9 2 0.07
10 7 0.24
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (8 bp):
ATTTTTTT
Found at i:20556306 original size:18 final size:17
Alignment explanation
Indices: 20556268--20556317 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
20556258 AATGTAGGTC
20556268 AATTTTTTTATTTTAAT
1 AATTTTTTTATTTTAAT
**
20556285 -ATTTTTTTATTTTTTGT
1 AATTTTTTTA-TTTTAAT
*
20556302 AATTTTTTTAATTTAA
1 AATTTTTTTATTTTAA
20556318 ACTACTCTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
16 9 0.35
17 8 0.31
18 9 0.35
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (17 bp):
AATTTTTTTATTTTAAT
Found at i:20556434 original size:26 final size:26
Alignment explanation
Indices: 20556404--20556470 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 26
20556394 ATTTGCAAAA
20556404 ATATTTTTGAATTATTCAATT-TTTAT
1 ATATTTTTGAATTATT-AATTATTTAT
*
20556430 ATATTTTTTGAAATT-TTAATTATTTTT
1 ATA-TTTTTG-AATTATTAATTATTTAT
*
20556457 AT-TTTTTTAATTAT
1 ATATTTTTGAATTAT
20556471 ATATATCCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 4 0.11
25 6 0.17
26 7 0.20
27 14 0.40
28 4 0.11
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (26 bp):
ATATTTTTGAATTATTAATTATTTAT
Found at i:20561475 original size:17 final size:17
Alignment explanation
Indices: 20561453--20561486 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
20561443 CTTTAATGAG
20561453 GGTTTAAAGGAGTTAGA
1 GGTTTAAAGGAGTTAGA
20561470 GGTTTAAAGGAGTTAGA
1 GGTTTAAAGGAGTTAGA
20561487 TATCTACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (17 bp):
GGTTTAAAGGAGTTAGA
Found at i:20561676 original size:21 final size:21
Alignment explanation
Indices: 20561638--20561681 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
20561628 AATTTAAACC
*
20561638 AAAATTTATATTTTTAAAAAT
1 AAAATGTATATTTTTAAAAAT
20561659 AAAATGTA-ATTTTATAAAAAT
1 AAAATGTATATTTT-TAAAAAT
20561680 AA
1 AA
20561682 CATAAACTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
AAAATGTATATTTTTAAAAAT
Found at i:20566285 original size:21 final size:21
Alignment explanation
Indices: 20566261--20566319 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
20566251 TAATAAGATA
20566261 TATGTTAAGTATGATCTG-TAT
1 TATG-TAAGTATGATCTGTTAT
*
20566282 TATGTAAATATGATCTGTTAT
1 TATGTAAGTATGATCTGTTAT
*
20566303 T-TGCTAAGCATGATCTG
1 TATG-TAAGTATGATCTG
20566320 AATCTGTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 14 0.42
21 19 0.58
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (21 bp):
TATGTAAGTATGATCTGTTAT
Found at i:20569138 original size:17 final size:17
Alignment explanation
Indices: 20569096--20569142 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
20569086 AATTCAATTT
20569096 TAATATAAAT-ATTCAA
1 TAATATAAATAATTCAA
*
20569112 TAAGATTAAATAATTCAA
1 TAATA-TAAATAATTCAA
20569130 TAATATAAATAAT
1 TAATATAAATAAT
20569143 ACAAAACGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 4 0.15
17 13 0.48
18 10 0.37
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (17 bp):
TAATATAAATAATTCAA
Found at i:20575495 original size:37 final size:37
Alignment explanation
Indices: 20575454--20575530 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
20575444 ACATGTCGCT
* **
20575454 GCATGAGTACTTCTAGATTGTGCCCAAAACTGTCATC
1 GCATGAGCACTTCTAGATTGCACCCAAAACTGTCATC
* *
20575491 GCATGAGCACTTTTAGATTGCACCCAAAACTGTCGTC
1 GCATGAGCACTTCTAGATTGCACCCAAAACTGTCATC
20575528 GCA
1 GCA
20575531 GGAATATTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (37 bp):
GCATGAGCACTTCTAGATTGCACCCAAAACTGTCATC
Found at i:20577358 original size:12 final size:12
Alignment explanation
Indices: 20577341--20577365 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20577331 TTTCCTCTTC
20577341 TATCTCTTTTGT
1 TATCTCTTTTGT
20577353 TATCTCTTTTGT
1 TATCTCTTTTGT
20577365 T
1 T
20577366 TTTCCCTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.08, T:0.68
Consensus pattern (12 bp):
TATCTCTTTTGT
Found at i:20578902 original size:16 final size:15
Alignment explanation
Indices: 20578878--20578907 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
20578868 CGAATAAATT
20578878 TTTTCCAAAATCCAG
1 TTTTCCAAAATCCAG
20578893 TTTTCTCAAAATCCA
1 TTTTC-CAAAATCCA
20578908 ATTACCCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.27, G:0.03, T:0.37
Consensus pattern (15 bp):
TTTTCCAAAATCCAG
Found at i:20580526 original size:27 final size:27
Alignment explanation
Indices: 20580479--20580531 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
20580469 AATTGTATTA
* *
20580479 TTTATTCGTGTTATTTATTTTATTTTT
1 TTTATTCATGTTATGTATTTTATTTTT
20580506 TTTATTCATG-TATGTATTTTTATTTT
1 TTTATTCATGTTATGTA-TTTTATTTT
20580532 GCCATCCTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.17, C:0.04, G:0.08, T:0.72
Consensus pattern (27 bp):
TTTATTCATGTTATGTATTTTATTTTT
Found at i:20598506 original size:51 final size:51
Alignment explanation
Indices: 20598425--20598573 Score: 205
Period size: 51 Copynumber: 3.0 Consensus size: 51
20598415 AGCATCTCAT
* * *
20598425 ATGTTAATT-AAG-TTCATGATTTAATTAAGTCATGCATTATGTAACTCTC
1 ATGTTAGTTAAAGTTTCATCATTAAATTAAGTCATGCATTATGTAACTCTC
* *
20598474 ATGTTAGTTAAAGTTTCATCATTAAATAAAGTCATGCATTATGTAACTCTT
1 ATGTTAGTTAAAGTTTCATCATTAAATTAAGTCATGCATTATGTAACTCTC
* *
20598525 ATGTTAGTTAAAGTTTGCATCA-TAAATTAAGTCACGCATTAAGTAACTC
1 ATGTTAGTTAAAGTTT-CATCATTAAATTAAGTCATGCATTATGTAACTC
20598574 ATTTGTTGAA
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
49 8 0.09
50 3 0.03
51 73 0.82
52 5 0.06
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (51 bp):
ATGTTAGTTAAAGTTTCATCATTAAATTAAGTCATGCATTATGTAACTCTC
Found at i:20609965 original size:27 final size:27
Alignment explanation
Indices: 20609923--20609992 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
20609913 CGCTAGAAAG
*
20609923 TGGAAACCTTTGTGGCTATCTTTAAAA
1 TGGAAACCTTTGTGGCAATCTTTAAAA
* * *
20609950 TGGAAACCTTTATGGCAATTTTTGAAA
1 TGGAAACCTTTGTGGCAATCTTTAAAA
20609977 TGGAAACCTTTGTGGC
1 TGGAAACCTTTGTGGC
20609993 GCAATCTGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (27 bp):
TGGAAACCTTTGTGGCAATCTTTAAAA
Found at i:20610002 original size:27 final size:27
Alignment explanation
Indices: 20609975--20610072 Score: 87
Period size: 27 Copynumber: 3.6 Consensus size: 27
20609965 CAATTTTTGA
20609975 AATGGAAA-CCTTTGTGGCGCAATCTG
1 AATGGAAAGCCTTTGTGGCGCAATCTG
*
20610001 AAT-GAAGAGCCTTTGTGGCG-ATTCATGG
1 AATGGAA-AGCCTTTGTGGCGCAATC-T-G
* *
20610029 AA-GGAAATGTCTTTGTGGCACAATCTG
1 AATGGAAA-GCCTTTGTGGCGCAATCTG
* *
20610056 AATGGAACGCCTCTGTG
1 AATGGAAAGCCTTTGTG
20610073 ACGATCTATG
Statistics
Matches: 57, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
25 3 0.05
26 7 0.12
27 23 0.40
28 21 0.37
29 3 0.05
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (27 bp):
AATGGAAAGCCTTTGTGGCGCAATCTG
Found at i:20610062 original size:28 final size:27
Alignment explanation
Indices: 20609975--20610062 Score: 69
Period size: 28 Copynumber: 3.3 Consensus size: 27
20609965 CAATTTTTGA
20609975 AATGGAA-A-CCTTTGTGGCGCAATCTG
1 AATGGAAGAGCCTTTGTGGC-CAATCTG
* *
20610001 AAT-GAAGAGCCTTTGTGGCGATTCATGG
1 AATGGAAGAGCCTTTGTGGCCAATC-T-G
*
20610029 AA-GGAA-ATGTCTTTGTGGCACAATCTG
1 AATGGAAGA-GCCTTTGTGGC-CAATCTG
20610056 AATGGAA
1 AATGGAA
20610063 CGCCTCTGTG
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
25 3 0.06
26 7 0.14
27 15 0.31
28 21 0.43
29 3 0.06
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (27 bp):
AATGGAAGAGCCTTTGTGGCCAATCTG
Found at i:20610098 original size:55 final size:55
Alignment explanation
Indices: 20609973--20610102 Score: 142
Period size: 55 Copynumber: 2.4 Consensus size: 55
20609963 GGCAATTTTT
* * *
20609973 GAAATGGAA-ACCTTTGTGGCGCAATCTGAATGAAGAGCCTTTGTGGCGATTCATG
1 GAAA-GGAATACCTTTGTGGCACAATCTGAATGAAGAGCCTCTGTGACGATTCATG
** *
20610028 G-AAGGAAATGTCTTTGTGGCACAATCTGAATGGAA-CGCCTCTGTGACGA-TCTATG
1 GAAAGG-AATACCTTTGTGGCACAATCTGAAT-GAAGAGCCTCTGTGACGATTC-ATG
20610083 GAAAGGAATACCTTTGTGGC
1 GAAAGGAATACCTTTGTGGC
20610103 TTACTCTAAG
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
53 2 0.03
54 6 0.10
55 47 0.76
56 7 0.11
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (55 bp):
GAAAGGAATACCTTTGTGGCACAATCTGAATGAAGAGCCTCTGTGACGATTCATG
Found at i:20610198 original size:27 final size:27
Alignment explanation
Indices: 20610174--20610312 Score: 104
Period size: 27 Copynumber: 5.1 Consensus size: 27
20610164 GAATGAAATT
* *
20610174 CCTTTGTGGCGTAGTAAGAAAGAAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAAG
* * * * * *
20610201 CCTCTATGGCG-ATTCTTGAATGAAATG
1 CCTTTGTGGCGTAAT-ATGAAAGAAAAG
20610228 CCTTTGTGGCGTAATATGAAAGAAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAAG
*
20610255 CCTTTGTGGCGT-ATCATGAAA-ATAAGTG
1 CCTTTGTGGCGTAAT-ATGAAAGA-AA-AG
* * * *
20610283 CCTTTATGGCATAGTGTGAAAGAAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAAG
20610310 CCT
1 CCT
20610313 ATATGGTGAG
Statistics
Matches: 86, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
26 5 0.06
27 59 0.69
28 20 0.23
29 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (27 bp):
CCTTTGTGGCGTAATATGAAAGAAAAG
Found at i:20610265 original size:54 final size:54
Alignment explanation
Indices: 20610141--20610265 Score: 178
Period size: 54 Copynumber: 2.3 Consensus size: 54
20610131 CTATCTAAAG
* * * *
20610141 GAAAAGCCTTTATGACAATTCTCGAATGAAATTCCTTTGTGGCGTAGTAAGAAA
1 GAAAAGCCTTTATGGCGATTCTCGAATGAAATGCCTTTGTGGCGTAATAAGAAA
* * *
20610195 GAAAAGCCTCTATGGCGATTCTTGAATGAAATGCCTTTGTGGCGTAATATGAAA
1 GAAAAGCCTTTATGGCGATTCTCGAATGAAATGCCTTTGTGGCGTAATAAGAAA
*
20610249 GAAAAGCCTTTGTGGCG
1 GAAAAGCCTTTATGGCG
20610266 TATCATGAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (54 bp):
GAAAAGCCTTTATGGCGATTCTCGAATGAAATGCCTTTGTGGCGTAATAAGAAA
Found at i:20611635 original size:40 final size:41
Alignment explanation
Indices: 20611576--20611693 Score: 161
Period size: 40 Copynumber: 2.9 Consensus size: 41
20611566 ACTGGGATAA
20611576 AATTTCAAGCTACGGCTTAGCAAGCTTTGAGCCGGTGTA-T
1 AATTTCAAGCTACGGCTTAGCAAGCTTTGAGCCGGTGTACT
* *
20611616 AATTTCAAGCTACGACTTAGCAAGCTTTGAGCCAGTG-ACT
1 AATTTCAAGCTACGGCTTAGCAAGCTTTGAGCCGGTGTACT
** *
20611656 AAACTCAAGCTACGGCTTAGC-AGGTTATGAGCCGGTGT
1 AATTTCAAGCTACGGCTTAGCAAGCTT-TGAGCCGGTGT
20611694 TGAAATTCAA
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
39 5 0.07
40 63 0.93
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (41 bp):
AATTTCAAGCTACGGCTTAGCAAGCTTTGAGCCGGTGTACT
Found at i:20614701 original size:20 final size:20
Alignment explanation
Indices: 20614624--20614703 Score: 64
Period size: 20 Copynumber: 4.2 Consensus size: 20
20614614 AAAATAAAAA
*
20614624 AAAAAATTTATAAAATATTA-
1 AAAAAACTTAT-AAATATTAT
*
20614644 AAAAATA-TTA-AAAT-TGAT
1 AAAAA-ACTTATAAATATTAT
*
20614662 -AAAAACTTATAAA-AGATAT
1 AAAAAACTTATAAATA-TTAT
20614681 AAAAAACTTATAAATATTAT
1 AAAAAACTTATAAATATTAT
20614701 AAA
1 AAA
20614704 TATCTAATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 16
0.71 0.06 0.24
Matches are distributed among these distances:
16 1 0.02
17 9 0.19
18 7 0.15
19 2 0.04
20 27 0.56
21 2 0.04
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (20 bp):
AAAAAACTTATAAATATTAT
Found at i:20614801 original size:21 final size:20
Alignment explanation
Indices: 20614758--20614803 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
20614748 GAACATATTT
20614758 AAAATATTTAAAATTTTATA
1 AAAATATTTAAAATTTTATA
* *
20614778 AAAATATATTATAATTCT-TA
1 AAAATAT-TTAAAATTTTATA
20614798 AAAATA
1 AAAATA
20614804 ATAAAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAATATTTAAAATTTTATA
Found at i:20614812 original size:41 final size:41
Alignment explanation
Indices: 20614767--20614850 Score: 96
Period size: 41 Copynumber: 2.0 Consensus size: 41
20614757 TAAAATATTT
* * * * * *
20614767 AAAATTTTATAAAAATATATTATAATTCTTAAAAATAATAA
1 AAAATTGTAAAAAAAAATATAAAAATTATTAAAAATAATAA
* *
20614808 AAAATTGTAAAAAAAAATATAAAAATTATTAAACATATTAA
1 AAAATTGTAAAAAAAAATATAAAAATTATTAAAAATAATAA
20614849 AA
1 AA
20614851 TTGATATAAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.33
Consensus pattern (41 bp):
AAAATTGTAAAAAAAAATATAAAAATTATTAAAAATAATAA
Found at i:20615660 original size:19 final size:16
Alignment explanation
Indices: 20615613--20615656 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 16
20615603 ATGTAGCAAA
20615613 AAAAATTATAAAAGAT
1 AAAAATTATAAAAGAT
*
20615629 AAAAATAAATAAAAGTTAT
1 AAAAAT-TATAAAAG--AT
20615648 AAAAATTAT
1 AAAAATTAT
20615657 TAAATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 6 0.26
17 7 0.30
18 2 0.09
19 8 0.35
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (16 bp):
AAAAATTATAAAAGAT
Found at i:20615676 original size:27 final size:27
Alignment explanation
Indices: 20615646--20615713 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
20615636 AATAAAAGTT
*
20615646 ATAAAAATTATTAAATTTTAATAAAAA
1 ATAAAAATTATTAAAATTTAATAAAAA
*
20615673 ATAAAAA-TATTTAAAATTTATTAAAAA
1 ATAAAAATTA-TTAAAATTTAATAAAAA
* *
20615700 TTAGAAAATAATTA
1 ATA-AAAATTATTA
20615714 TAAAATTCGT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
26 2 0.06
27 24 0.71
28 7 0.21
29 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (27 bp):
ATAAAAATTATTAAAATTTAATAAAAA
Found at i:20617372 original size:30 final size:30
Alignment explanation
Indices: 20617336--20617449 Score: 131
Period size: 30 Copynumber: 3.8 Consensus size: 30
20617326 TTTTAAAAAA
* * *
20617336 TTTTTAACCCCCAAACTTTTTAATAATTGT
1 TTTTTAACCCCCAAACTTTCTAAAAATTAT
* *
20617366 TTTTTAACCCCTAAACTATCTAAAAATTAT
1 TTTTTAACCCCCAAACTTTCTAAAAATTAT
* * *
20617396 GTTTTAA-CCTCAAACTTTCCAAAAATTAT
1 TTTTTAACCCCCAAACTTTCTAAAAATTAT
* *
20617425 TTTTTAACCCCTAAACTTTCCAAAA
1 TTTTTAACCCCCAAACTTTCTAAAA
20617450 TTTGAATTTG
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
29 24 0.34
30 46 0.66
ACGTcount: A:0.36, C:0.22, G:0.02, T:0.40
Consensus pattern (30 bp):
TTTTTAACCCCCAAACTTTCTAAAAATTAT
Found at i:20617463 original size:29 final size:29
Alignment explanation
Indices: 20617431--20617609 Score: 123
Period size: 30 Copynumber: 6.1 Consensus size: 29
20617421 TTATTTTTTA
20617431 ACCCCTAAACTTTCCAAAATTTGAATTTG
1 ACCCCTAAACTTTCCAAAATTTGAATTTG
* ** **
20617460 ACCCTTAAACTTTTTAAAAATTCAAATTTG
1 ACCCCTAAAC-TTTCCAAAATTTGAATTTG
*
20617490 A-CCCTCGAACTTTCCAAAAATTTGAATTTG
1 ACCCCT-AAACTTTCC-AAAATTTGAATTTG
* *
20617520 A-CCCTGAACTTTCTAAAAATTCTG-ATTTG
1 ACCCCTAAACTTTC-CAAAATT-TGAATTTG
* * * **
20617549 ACTCTTGAACTTTTTAAAATTATG-ATTTG
1 ACCCCTAAACTTTCCAAAATT-TGAATTTG
** *
20617578 ACCTTTAAACTTTCCAAAAATTTAAATTTG
1 ACCCCTAAACTTTCC-AAAATTTGAATTTG
20617608 AC
1 AC
20617610 TCTGTTTTAA
Statistics
Matches: 119, Mismatches: 23, Indels: 15
0.76 0.15 0.10
Matches are distributed among these distances:
29 59 0.50
30 60 0.50
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (29 bp):
ACCCCTAAACTTTCCAAAATTTGAATTTG
Found at i:20617470 original size:59 final size:59
Alignment explanation
Indices: 20617368--20617599 Score: 170
Period size: 59 Copynumber: 3.9 Consensus size: 59
20617358 ATAATTGTTT
* * * * * *
20617368 TTTAACCCCTAAACTATCTAAAAATTATG-TTTTAACCTCAAACTTTCCAAAAATTATTT
1 TTTAACCCCTAAACTTTC-CAAAATTATGATTTGACCCTTAAACTTTCCAAAAATTATTA
** *
20617427 TTTAACCCCTAAACTTTCCAAAATT-TGAATTTGACCCTTAAACTTTTTAAAAATTCA-AA
1 TTTAACCCCTAAACTTTCCAAAATTATG-ATTTGACCCTTAAACTTTCCAAAAATT-ATTA
* * * * * *
20617486 TTTGA-CCCTCGAACTTTCCAAAAATT-TGAATTTGACCC-TGAACTTTCTAAAAATTCTGA
1 TTTAACCCCT-AAACTTTCC-AAAATTATG-ATTTGACCCTTAAACTTTCCAAAAATTATTA
* * * * ** *
20617545 TTTGACTCTTGAACTTTTTAAAATTATGATTTGACCTTTAAACTTTCCAAAAATT
1 TTTAACCCCTAAACTTTCCAAAATTATGATTTGACCCTTAAACTTTCCAAAAATT
20617600 TAAATTTGAC
Statistics
Matches: 142, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
57 2 0.01
58 24 0.17
59 95 0.67
60 21 0.15
ACGTcount: A:0.36, C:0.19, G:0.06, T:0.39
Consensus pattern (59 bp):
TTTAACCCCTAAACTTTCCAAAATTATGATTTGACCCTTAAACTTTCCAAAAATTATTA
Found at i:20617488 original size:30 final size:30
Alignment explanation
Indices: 20617454--20617609 Score: 147
Period size: 30 Copynumber: 5.3 Consensus size: 30
20617444 CCAAAATTTG
* *
20617454 AATTTGACCCTTAAACTTTTTAAAAATTCA
1 AATTTGACCCTTGAACTTTCTAAAAATTCA
* * **
20617484 AATTTGACCCTCGAACTTTCCAAAAATTTG
1 AATTTGACCCTTGAACTTTCTAAAAATTCA
*
20617514 AATTTGACCC-TGAACTTTCTAAAAATTCT
1 AATTTGACCCTTGAACTTTCTAAAAATTCA
* * *
20617543 GATTTGACTCTTGAACTTT-TTAAAATT-A
1 AATTTGACCCTTGAACTTTCTAAAAATTCA
* * * * *
20617571 TGATTTGACCTTTAAACTTTCCAAAAATTTA
1 -AATTTGACCCTTGAACTTTCTAAAAATTCA
20617602 AATTTGAC
1 AATTTGAC
20617610 TCTGTTTTAA
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
29 46 0.45
30 55 0.54
31 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.08, T:0.40
Consensus pattern (30 bp):
AATTTGACCCTTGAACTTTCTAAAAATTCA
Found at i:20617607 original size:59 final size:59
Alignment explanation
Indices: 20617438--20617612 Score: 196
Period size: 59 Copynumber: 3.0 Consensus size: 59
20617428 TTAACCCCTA
* * *
20617438 AACTTTCC-AAAATTTGAATTTGACCCTTAAACTTTTTAAAAATTCAAATTTGACCCTCG
1 AACTTTCCAAAAATTTGAATTTGA-CCTTAAACTTTCTAAAAATTTAAATTTGACTCTCG
* * * *
20617497 AACTTTCCAAAAATTTGAATTTGACCCTGAACTTTCTAAAAATTCT-GATTTGACTCTTG
1 AACTTTCCAAAAATTTGAATTTGACCTTAAACTTTCTAAAAATT-TAAATTTGACTCTCG
** *
20617556 AACTTT-TTAAAATTATG-ATTTGACCTTTAAACTTTCCAAAAATTTAAATTTGACTCT
1 AACTTTCCAAAAATT-TGAATTTGACC-TTAAACTTTCTAAAAATTTAAATTTGACTCT
20617613 GTTTTAATGT
Statistics
Matches: 98, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
58 15 0.15
59 68 0.69
60 15 0.15
ACGTcount: A:0.35, C:0.18, G:0.07, T:0.40
Consensus pattern (59 bp):
AACTTTCCAAAAATTTGAATTTGACCTTAAACTTTCTAAAAATTTAAATTTGACTCTCG
Found at i:20617803 original size:18 final size:18
Alignment explanation
Indices: 20617782--20617817 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
20617772 TTTATTATTT
20617782 TATTGTATTTTATGTATA
1 TATTGTATTTTATGTATA
*
20617800 TATTGTATTTTATTTATA
1 TATTGTATTTTATGTATA
20617818 CTTGTAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (18 bp):
TATTGTATTTTATGTATA
Found at i:20626126 original size:16 final size:16
Alignment explanation
Indices: 20626105--20626153 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 16
20626095 GGTGGGATGA
20626105 AAATAAATTTTTAATT
1 AAATAAATTTTTAATT
20626121 AAATAAA--TTTAATT
1 AAATAAATTTTTAATT
* *
20626135 AATTGAAATTTTAAATT
1 AAAT-AAATTTTTAATT
20626152 AA
1 AA
20626154 TTACAACTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
14 10 0.36
15 3 0.11
16 7 0.25
17 8 0.29
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
AAATAAATTTTTAATT
Found at i:20634669 original size:58 final size:58
Alignment explanation
Indices: 20634605--20634719 Score: 176
Period size: 58 Copynumber: 2.0 Consensus size: 58
20634595 AAAAGAGTTG
*
20634605 TTTATGAGTATTATTTAGGAATAAAATTATATTTGGATTTAAAAATATTTGGGTTTAT
1 TTTATGAGTATTATTTAAGAATAAAATTATATTTGGATTTAAAAATATTTGGGTTTAT
* * * * *
20634663 TTTATGAGTGTTTTTTAATAATGAAATTATATTTGGGTTTAAAAATATTTGGGTTTA
1 TTTATGAGTATTATTTAAGAATAAAATTATATTTGGATTTAAAAATATTTGGGTTTA
20634720 GTTTGTTGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.50
Consensus pattern (58 bp):
TTTATGAGTATTATTTAAGAATAAAATTATATTTGGATTTAAAAATATTTGGGTTTAT
Found at i:20634737 original size:58 final size:58
Alignment explanation
Indices: 20634628--20634738 Score: 163
Period size: 58 Copynumber: 1.9 Consensus size: 58
20634618 TTTAGGAATA
**
20634628 AAATTATATTTGGATTTAAAAATATTTGGGTTTATTTTATGAGTGTTTTTTAATAATG
1 AAATTATATTTGGATTTAAAAATATTTGGGTTTATTTTATGAGTGCGTTTTAATAATG
*
20634686 AAATTATATTTGGGTTTAAAAATATTTGGGTTTAGTTTGT-TGA-TGCGTTTTAA
1 AAATTATATTTGGATTTAAAAATATTTGGGTTTA-TTT-TATGAGTGCGTTTTAA
20634739 ATATTAGGGA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
58 41 0.85
59 6 0.12
60 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.18, T:0.50
Consensus pattern (58 bp):
AAATTATATTTGGATTTAAAAATATTTGGGTTTATTTTATGAGTGCGTTTTAATAATG
Found at i:20637143 original size:17 final size:17
Alignment explanation
Indices: 20637108--20637150 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
20637098 CTCCATTGAC
* *
20637108 CTTTAACCTTCCATCTT
1 CTTTAACTTTCCATATT
*
20637125 CTTTAACTTTTCATATT
1 CTTTAACTTTCCATATT
20637142 CTTGTAACT
1 CTT-TAACT
20637151 ACTTTTTCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.21, C:0.26, G:0.02, T:0.51
Consensus pattern (17 bp):
CTTTAACTTTCCATATT
Found at i:20638180 original size:15 final size:15
Alignment explanation
Indices: 20638162--20638192 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
20638152 TTAGCATTGC
20638162 TTTTGAAAAGTGTGG
1 TTTTGAAAAGTGTGG
20638177 TTTTGAAAAGTGTGG
1 TTTTGAAAAGTGTGG
20638192 T
1 T
20638193 GCAAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (15 bp):
TTTTGAAAAGTGTGG
Found at i:20640574 original size:72 final size:72
Alignment explanation
Indices: 20640222--20640545 Score: 499
Period size: 72 Copynumber: 4.5 Consensus size: 72
20640212 AACAAATTTT
* * * *
20640222 ATATCCAA-AATCAAATATAAACAACTATTGATAAAACTAAAATACACATAAATAAGTAGAACAT
1 ATATCCAAGAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACAT
20640286 AAATTCA
66 AAATTCA
* * * *
20640293 ATATCCAA-AAGCCAAACATAAACAGCTATTAATAAAACTAGATTGCACATAAATAAGTAGGACA
1 ATATCCAAGAA-CCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACA
20640357 TAAATTCA
65 TAAATTCA
* * *
20640365 ATATTCAAGAACCAAACATAAGCAACTATTGATAAAATTAGATTACACATAAATAAGTAGAACAT
1 ATATCCAAGAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACAT
20640430 AAATTCA
66 AAATTCA
*
20640437 ATATCCAAGAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
1 ATATCCAAGAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACAT
20640502 AAATTCA
66 AAATTCA
* *
20640509 ATATCCAAAAATCAAACATAAACAACTATTGATAAAA
1 ATATCCAAGAACCAAACATAAACAACTATTGATAAAA
20640546 GTAGTTTAGC
Statistics
Matches: 230, Mismatches: 21, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
71 10 0.04
72 218 0.95
73 2 0.01
ACGTcount: A:0.55, C:0.15, G:0.06, T:0.23
Consensus pattern (72 bp):
ATATCCAAGAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACAT
AAATTCA
Found at i:20641007 original size:18 final size:18
Alignment explanation
Indices: 20640984--20641031 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
20640974 TCCATCAATA
* *
20640984 TTAACATCATTTGAAGTG
1 TTAACATCATTTAAAATG
20641002 TTAACATCATTTAAAATG
1 TTAACATCATTTAAAATG
20641020 TTAACATCATTT
1 TTAACATCATTT
20641032 CCTGCATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (18 bp):
TTAACATCATTTAAAATG
Found at i:20646305 original size:15 final size:15
Alignment explanation
Indices: 20646285--20646319 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
20646275 GAATCGTGCT
20646285 AATAACGTATTATAA
1 AATAACGTATTATAA
20646300 AATAACGTATTATAA
1 AATAACGTATTATAA
20646315 AATAA
1 AATAA
20646320 ATTTAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (15 bp):
AATAACGTATTATAA
Found at i:20651330 original size:22 final size:21
Alignment explanation
Indices: 20651287--20651341 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
20651277 GTATTTGTTT
* *
20651287 ATTTTTTAA-ATTTTTTATAA
1 ATTTTTAAACATTTTTAATAA
20651307 ATTTTTAAACATTTTTAATAAA
1 ATTTTTAAACATTTTTAAT-AA
20651329 ATTTTTAAACATT
1 ATTTTTAAACATT
20651342 GTCATATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 8 0.26
21 8 0.26
22 15 0.48
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTTTTAAACATTTTTAATAA
Found at i:20652646 original size:23 final size:22
Alignment explanation
Indices: 20652594--20652647 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
20652584 TGATAAAATA
*
20652594 TATTTTTTATAATTAATATACT
1 TATTTTTTATAAGTAATATACT
*
20652616 TAAATTTTTATTAAGTAATA-ACT
1 T-ATTTTTTA-TAAGTAATATACT
20652639 CTATTTTTT
1 -TATTTTTT
20652648 TGTAAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 1 0.04
23 16 0.62
24 9 0.35
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (22 bp):
TATTTTTTATAAGTAATATACT
Found at i:20654180 original size:8 final size:8
Alignment explanation
Indices: 20654158--20654186 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
20654148 TATATTATTT
20654158 TAATTTAA
1 TAATTTAA
20654166 T-ATTTAA
1 TAATTTAA
20654173 TAATTTAA
1 TAATTTAA
20654181 TAATTT
1 TAATTT
20654187 TTATTTATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (8 bp):
TAATTTAA
Found at i:20654635 original size:24 final size:24
Alignment explanation
Indices: 20654603--20654651 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
20654593 CAAGTTCCAT
20654603 TATTAATTTAATTTA-CTTTTTTA
1 TATTAATTTAATTTATCTTTTTTA
*
20654626 TATTGAATTTAATTTATGTTTTTTA
1 TATT-AATTTAATTTATCTTTTTTA
20654651 T
1 T
20654652 GTGTATTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.17
24 11 0.48
25 8 0.35
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (24 bp):
TATTAATTTAATTTATCTTTTTTA
Found at i:20656317 original size:29 final size:30
Alignment explanation
Indices: 20656262--20656330 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 30
20656252 ATTTTAAAGT
20656262 AAAA-ATAAAATTATACTTTAATTCTTTTA
1 AAAATATAAAATTATACTTTAATTCTTTTA
*
20656291 AAAATATAAAATTTTGA-TTTAA-TCTTTTA
1 AAAATATAAAATTAT-ACTTTAATTCTTTTA
*
20656320 AATATTATAAA
1 AA-AATATAAA
20656331 GATATAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 13 0.37
30 21 0.60
31 1 0.03
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (30 bp):
AAAATATAAAATTATACTTTAATTCTTTTA
Found at i:20658356 original size:13 final size:12
Alignment explanation
Indices: 20658325--20658360 Score: 56
Period size: 11 Copynumber: 3.0 Consensus size: 12
20658315 ATAATAATGT
20658325 ATAAAAAAGAAA
1 ATAAAAAAGAAA
20658337 A-AAAAAAGAAA
1 ATAAAAAAGAAA
20658348 ATAATAAAAGAAA
1 ATAA-AAAAGAAA
20658361 CAGATGAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 11 0.50
12 3 0.14
13 8 0.36
ACGTcount: A:0.83, C:0.00, G:0.08, T:0.08
Consensus pattern (12 bp):
ATAAAAAAGAAA
Found at i:20669608 original size:21 final size:19
Alignment explanation
Indices: 20669572--20669614 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
20669562 ATCATTATAT
*
20669572 AAATATTAAAATATTTAATA
1 AAATATTAAAAAATTTAA-A
20669592 AAATATATAAAAAATTTAAA
1 AAATAT-TAAAAAATTTAAA
20669612 AAA
1 AAA
20669615 CAATATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAATATTAAAAAATTTAAA
Done.