Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 78 of 126
Found at i:23403288 original size:20 final size:20
Alignment explanation
Indices: 23403251--23403288 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
23403241 TTACTTAAAA
*
23403251 ATATTTAAAATTTATATTTC
1 ATATTTAAAATATATATTTC
23403271 ATATATTAAAATAT-TATT
1 ATAT-TTAAAATATATATT
23403289 AAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATTTAAAATATATATTTC
Found at i:23406515 original size:17 final size:18
Alignment explanation
Indices: 23406493--23406532 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
23406483 TCTTTGGCTC
23406493 ATAATTTTAT-AATATTT
1 ATAATTTTATAAATATTT
*
23406510 ATAA-TTTATAAATTTTT
1 ATAATTTTATAAATATTT
23406527 ATAATT
1 ATAATT
23406533 AAACAAAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 5 0.25
17 14 0.70
18 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATAATTTTATAAATATTT
Found at i:23411031 original size:19 final size:18
Alignment explanation
Indices: 23411004--23411043 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
23410994 CCACATTAGC
*
23411004 AAATGAATTTAAACTTAAA
1 AAATGAA-TTAAAATTAAA
*
23411023 AAATTAATTAAAATTAAA
1 AAATGAATTAAAATTAAA
23411041 AAA
1 AAA
23411044 AATTAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (18 bp):
AAATGAATTAAAATTAAA
Found at i:23411095 original size:10 final size:9
Alignment explanation
Indices: 23411065--23411099 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
23411055 TGGGACCCAC
*
23411065 AATTAAAAT
1 AATTAAAAA
23411074 AATTAAAAA
1 AATTAAAAA
23411083 AATTAAAACA
1 AATTAAAA-A
23411093 AATTAAA
1 AATTAAA
23411100 CACTAACAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (9 bp):
AATTAAAAA
Found at i:23417106 original size:125 final size:125
Alignment explanation
Indices: 23416884--23417134 Score: 502
Period size: 125 Copynumber: 2.0 Consensus size: 125
23416874 GAATTGCTGA
23416884 TACTATTTAACATGATCATTCTCTCTTAATCTTTGTGGAAAAGGTAAAGGTAAAGATATATCAGA
1 TACTATTTAACATGATCATTCTCTCTTAATCTTTGTGGAAAAGGTAAAGGTAAAGATATATCAGA
23416949 TTGCATCGACAATTTTGAGGGTCGAACATTAGGCATATGAGTGACAATTTGTGGAACTTC
66 TTGCATCGACAATTTTGAGGGTCGAACATTAGGCATATGAGTGACAATTTGTGGAACTTC
23417009 TACTATTTAACATGATCATTCTCTCTTAATCTTTGTGGAAAAGGTAAAGGTAAAGATATATCAGA
1 TACTATTTAACATGATCATTCTCTCTTAATCTTTGTGGAAAAGGTAAAGGTAAAGATATATCAGA
23417074 TTGCATCGACAATTTTGAGGGTCGAACATTAGGCATATGAGTGACAATTTGTGGAACTTC
66 TTGCATCGACAATTTTGAGGGTCGAACATTAGGCATATGAGTGACAATTTGTGGAACTTC
23417134 T
1 T
23417135 TTGTCTGGTA
Statistics
Matches: 126, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 126 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.34
Consensus pattern (125 bp):
TACTATTTAACATGATCATTCTCTCTTAATCTTTGTGGAAAAGGTAAAGGTAAAGATATATCAGA
TTGCATCGACAATTTTGAGGGTCGAACATTAGGCATATGAGTGACAATTTGTGGAACTTC
Found at i:23424778 original size:34 final size:34
Alignment explanation
Indices: 23424748--23424839 Score: 123
Period size: 34 Copynumber: 2.7 Consensus size: 34
23424738 GGAAATGCAT
*
23424748 TGACAATGCAAATG-GAATGATAATTAAAATGTAA
1 TGACAATGCAAATGTG-ATGACAATTAAAATGTAA
*
23424782 TGACAATGGAAATGTGATGACAATTAAAATGTAA
1 TGACAATGCAAATGTGATGACAATTAAAATGTAA
** *
23424816 TGACAATGGGAATTTGATGACAAT
1 TGACAATGCAAATGTGATGACAAT
23424840 GGGAATGTGA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
34 52 0.98
35 1 0.02
ACGTcount: A:0.46, C:0.07, G:0.21, T:0.27
Consensus pattern (34 bp):
TGACAATGCAAATGTGATGACAATTAAAATGTAA
Found at i:23424803 original size:51 final size:51
Alignment explanation
Indices: 23424728--23424855 Score: 132
Period size: 51 Copynumber: 2.5 Consensus size: 51
23424718 ATTAAATTAC
* * * *
23424728 AATGACAAATGGAAATG-CATTGACAATGCAAATGGAATGATAATTAAAATGT
1 AATGAC-AATGGAAATGTGA-TGACAATGAAAATGGAATGACAATGAAAATGT
* * ** *
23424780 AATGACAATGGAAATGTGATGACAATTAAAATGTAATGACAATGGGAATTT
1 AATGACAATGGAAATGTGATGACAATGAAAATGGAATGACAATGAAAATGT
* *
23424831 GATGACAATGGGAATGTGATGACAA
1 AATGACAATGGAAATGTGATGACAA
23424856 AAGAGATGAC
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
51 57 0.89
52 7 0.11
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.25
Consensus pattern (51 bp):
AATGACAATGGAAATGTGATGACAATGAAAATGGAATGACAATGAAAATGT
Found at i:23424835 original size:17 final size:17
Alignment explanation
Indices: 23424729--23424855 Score: 105
Period size: 17 Copynumber: 7.4 Consensus size: 17
23424719 TTAAATTACA
*
23424729 ATGACAAATGGAAATG-C
1 ATGAC-AATGGAAATGTG
*
23424746 ATTGACAATGCAAATG-G
1 A-TGACAATGGAAATGTG
* ** *
23424763 AATGATAATTAAAATGTA
1 -ATGACAATGGAAATGTG
23424781 ATGACAATGGAAATGTG
1 ATGACAATGGAAATGTG
** *
23424798 ATGACAATTAAAATGTA
1 ATGACAATGGAAATGTG
* *
23424815 ATGACAATGGGAATTTG
1 ATGACAATGGAAATGTG
*
23424832 ATGACAATGGGAATGTG
1 ATGACAATGGAAATGTG
23424849 ATGACAA
1 ATGACAA
23424856 AAGAGATGAC
Statistics
Matches: 88, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
17 83 0.94
18 5 0.06
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.25
Consensus pattern (17 bp):
ATGACAATGGAAATGTG
Found at i:23424847 original size:34 final size:34
Alignment explanation
Indices: 23424729--23424855 Score: 121
Period size: 34 Copynumber: 3.7 Consensus size: 34
23424719 TTAAATTACA
* * * *
23424729 ATGACAAATGGAAATGCATTGACAATGCAAATG-G
1 ATGAC-AATGAAAATGTAATGACAATGGAAATGTG
* *
23424763 AATGATAATTAAAATGTAATGACAATGGAAATGTG
1 -ATGACAATGAAAATGTAATGACAATGGAAATGTG
* * *
23424798 ATGACAATTAAAATGTAATGACAATGGGAATTTG
1 ATGACAATGAAAATGTAATGACAATGGAAATGTG
** *
23424832 ATGACAATGGGAATGTGATGACAA
1 ATGACAATGAAAATGTAATGACAA
23424856 AAGAGATGAC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
34 73 0.94
35 5 0.06
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.25
Consensus pattern (34 bp):
ATGACAATGAAAATGTAATGACAATGGAAATGTG
Found at i:23433072 original size:15 final size:16
Alignment explanation
Indices: 23433052--23433081 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
23433042 GTCATCATTC
23433052 TCTTCATCC-TCTCGT
1 TCTTCATCCTTCTCGT
23433067 TCTTCATCCTTCTCG
1 TCTTCATCCTTCTCG
23433082 GCATGATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.07, C:0.40, G:0.07, T:0.47
Consensus pattern (16 bp):
TCTTCATCCTTCTCGT
Found at i:23451082 original size:13 final size:13
Alignment explanation
Indices: 23451064--23451088 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23451054 TAAGTTAAAA
23451064 ATGCTAAAAATGC
1 ATGCTAAAAATGC
23451077 ATGCTAAAAATG
1 ATGCTAAAAATG
23451089 ATTAAATGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (13 bp):
ATGCTAAAAATGC
Found at i:23459438 original size:62 final size:62
Alignment explanation
Indices: 23459341--23459464 Score: 194
Period size: 62 Copynumber: 2.0 Consensus size: 62
23459331 GACCACAAGG
* *
23459341 TAAATGATAGATAAATTGTCGCTATAATTAAGTTCAATGAAATCTTACCAACCTCGACTTCC
1 TAAATGATAGATAAATTATCGCTACAATTAAGTTCAATGAAATCTTACCAACCTCGACTTCC
* * * *
23459403 TAAATGTTAGATAAATTATCGCTGCAATTAAGTTCAATGAAATCTTACCAACTTTGACTTCC
1 TAAATGATAGATAAATTATCGCTACAATTAAGTTCAATGAAATCTTACCAACCTCGACTTCC
23459465 CTATTATCAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (62 bp):
TAAATGATAGATAAATTATCGCTACAATTAAGTTCAATGAAATCTTACCAACCTCGACTTCC
Found at i:23465870 original size:17 final size:17
Alignment explanation
Indices: 23465850--23465889 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
23465840 TAGATGCAGA
*
23465850 GACAATAAAAATGTAGT
1 GACAATAAAAATGTAGG
23465867 GACAATAAAAATGTAGG
1 GACAATAAAAATGTAGG
23465884 GACAAT
1 GACAAT
23465890 TATACTACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (17 bp):
GACAATAAAAATGTAGG
Found at i:23475345 original size:22 final size:22
Alignment explanation
Indices: 23475320--23475362 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
23475310 ACTCTTAAGA
* *
23475320 TCTATAGTTTCACATTCACATT
1 TCTAAAGTTTCACAATCACATT
*
23475342 TCTAAAGTTTCAGAATCACAT
1 TCTAAAGTTTCACAATCACAT
23475363 CTAAAGAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.40
Consensus pattern (22 bp):
TCTAAAGTTTCACAATCACATT
Found at i:23475367 original size:20 final size:20
Alignment explanation
Indices: 23475319--23475368 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
23475309 TACTCTTAAG
* *
23475319 ATCTATAGTTTCACATTCAC
1 ATCTAAAGTTTCACAATCAC
*
23475339 ATTTCTAAAGTTTCAGAATCAC
1 A--TCTAAAGTTTCACAATCAC
23475361 ATCTAAAG
1 ATCTAAAG
23475369 AATCACTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 8 0.32
22 17 0.68
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (20 bp):
ATCTAAAGTTTCACAATCAC
Found at i:23476540 original size:24 final size:24
Alignment explanation
Indices: 23476508--23476563 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
23476498 TCCAATAATA
*
23476508 GCCACATAGTTATGCAG-AGAATCT
1 GCCACATAGTTATGCAGTA-AAACT
*
23476532 GCCACATAGTTTTGCAGTAAAACT
1 GCCACATAGTTATGCAGTAAAACT
23476556 GCCACATA
1 GCCACATA
23476564 TTTTCCAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 28 0.97
25 1 0.03
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (24 bp):
GCCACATAGTTATGCAGTAAAACT
Found at i:23476729 original size:46 final size:48
Alignment explanation
Indices: 23476651--23476779 Score: 131
Period size: 46 Copynumber: 2.8 Consensus size: 48
23476641 TTATCACTTA
* * *
23476651 TCACATTTTTAGCATTTTTCATTCTCACATATCACATGTTACA-G-TTT
1 TCACATTTTT-GCATATATCATGCTCACATATCACATGTTACACGATTT
* * * *
23476698 TCACATTTTTGCATGTGTAATGCTCACATATCAC--GTTTCACGATTT
1 TCACATTTTTGCATATATCATGCTCACATATCACATGTTACACGATTT
* * *
23476744 CCACAGTTTAGCATATATCATGCTCACATATCACAT
1 TCACATTTTTGCATATATCATGCTCACATATCACAT
23476780 ATCACGTAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
44 5 0.07
45 1 0.01
46 51 0.76
47 10 0.15
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.40
Consensus pattern (48 bp):
TCACATTTTTGCATATATCATGCTCACATATCACATGTTACACGATTT
Found at i:23483989 original size:79 final size:79
Alignment explanation
Indices: 23483840--23483993 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 79
23483830 ATAACTTACA
* * *
23483840 TTGTCAATTTAACTAACTAGAGTTGGGCTCACATTTGTGGTTTATCCGCAAGGCACTAGGTGTTA
1 TTGTCAATTTAACTAACTAGAGTCGGGCTCACATTTATGGTTTATCCGCAAGGCACTAGGTGCTA
*
23483905 GGATTTGACGAACG
66 AGATTTGACGAACG
* * * * * *
23483919 TTGTCAGTTTAACTGACTAGAGTCGGGCTCACATTTATTGTTTATTCGCTAA-GCATTGGGTGCT
1 TTGTCAATTTAACTAACTAGAGTCGGGCTCACATTTATGGTTTATCCGC-AAGGCACTAGGTGCT
23483983 AAGATTTGACG
65 AAGATTTGACG
23483994 GATATTGTTG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
79 62 0.97
80 2 0.03
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (79 bp):
TTGTCAATTTAACTAACTAGAGTCGGGCTCACATTTATGGTTTATCCGCAAGGCACTAGGTGCTA
AGATTTGACGAACG
Found at i:23486255 original size:18 final size:17
Alignment explanation
Indices: 23486215--23486256 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
23486205 AAAAGTGATT
23486215 AAAAAAGTAGAGAAAAA
1 AAAAAAGTAGAGAAAAA
23486232 ATAAAAA-TATGAGAAAAA
1 A-AAAAAGTA-GAGAAAAA
23486250 GAAAAAA
1 -AAAAAA
23486257 AATATTTCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.14
18 18 0.82
19 1 0.05
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (17 bp):
AAAAAAGTAGAGAAAAA
Found at i:23487254 original size:12 final size:12
Alignment explanation
Indices: 23487237--23487261 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23487227 TTGAGTTGGT
23487237 GGACTCAACTTG
1 GGACTCAACTTG
23487249 GGACTCAACTTG
1 GGACTCAACTTG
23487261 G
1 G
23487262 TATAAGTCGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (12 bp):
GGACTCAACTTG
Found at i:23498987 original size:79 final size:78
Alignment explanation
Indices: 23498856--23499079 Score: 243
Period size: 79 Copynumber: 2.8 Consensus size: 78
23498846 TGAATAACTT
* * * *
23498856 ACATTGTCAGTTTTACTAACTAGAGCTAGGCTCACATTTTCGGTTTATCCGCTAGGCACTGGGTG
1 ACATTGTCAG-TTTAATAACTAGAGCTGGGCTCACATTTACAGTTTATCCGCTAGGCACTGGGTG
* * *
23498921 TTAGGATTTGACGG
65 CTAAGATTTGACAG
* * *
23498935 ACATTGTCAGTTTAAATGACTAGAGCTGGGCTCACATTTGCAGTTTATCCGCTAAGCACTGGGTG
1 ACATTGTCAGTTT-AATAACTAGAGCTGGGCTCACATTTACAGTTTATCCGCTAGGCACTGGGTG
23499000 CTAAGATTTGACAG
65 CTAAGATTTGACAG
* * * * ** * *
23499014 ATACTGT-AGGTTAATCCAACTAGAGTTGGGCTCACAACTACTGTTTATCTGCTAGGCACTGGGT
1 ACATTGTCAGTTTAAT--AACTAGAGCTGGGCTCACATTTACAGTTTATCCGCTAGGCACTGGGT
23499078 GC
64 GC
23499080 CATAACTGTC
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
77 3 0.02
78 7 0.06
79 112 0.92
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (78 bp):
ACATTGTCAGTTTAATAACTAGAGCTGGGCTCACATTTACAGTTTATCCGCTAGGCACTGGGTGC
TAAGATTTGACAG
Found at i:23508985 original size:23 final size:23
Alignment explanation
Indices: 23508953--23509007 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
23508943 ATCAAGATCA
* *
23508953 CACCAAAGTGCCAGGAACAAGAG
1 CACCGAAGTGCAAGGAACAAGAG
* *
23508976 CATCGAAGTGCAAGTAACAAGAG
1 CACCGAAGTGCAAGGAACAAGAG
*
23508999 TACCGAAGT
1 CACCGAAGT
23509008 AAAAATAAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.42, C:0.22, G:0.25, T:0.11
Consensus pattern (23 bp):
CACCGAAGTGCAAGGAACAAGAG
Found at i:23527620 original size:29 final size:27
Alignment explanation
Indices: 23527575--23527653 Score: 69
Period size: 29 Copynumber: 3.0 Consensus size: 27
23527565 TTTTAAATCA
23527575 TTTTTATATTTTGAA-TTTTAAAGAATT
1 TTTTTATATTTTGAATTTTTAAA-AATT
*
23527602 TTTTTCATAATTTTTAATTTTTAAAAATT
1 TTTTT-AT-ATTTTGAATTTTTAAAAATT
* *
23527631 ATATT-T-TTTT--ATTTTTAAAAATT
1 TTTTTATATTTTGAATTTTTAAAAATT
23527654 ATATATTTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
23 13 0.28
25 4 0.09
27 6 0.13
28 2 0.04
29 14 0.30
30 7 0.15
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (27 bp):
TTTTTATATTTTGAATTTTTAAAAATT
Found at i:23527638 original size:23 final size:24
Alignment explanation
Indices: 23527611--23527665 Score: 94
Period size: 23 Copynumber: 2.3 Consensus size: 24
23527601 TTTTTTCATA
23527611 ATTTTTAATTTTTAAAAATTATAT
1 ATTTTTAATTTTTAAAAATTATAT
*
23527635 -TTTTTTATTTTTAAAAATTATAT
1 ATTTTTAATTTTTAAAAATTATAT
23527658 ATTTTTAA
1 ATTTTTAA
23527666 ATTATAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 22 0.79
24 6 0.21
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
ATTTTTAATTTTTAAAAATTATAT
Found at i:23527660 original size:17 final size:17
Alignment explanation
Indices: 23527640--23527679 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
23527630 TATATTTTTT
23527640 TATTTTTAAAAATTATA
1 TATTTTTAAAAATTATA
23527657 TATTTTT--AAATTATA
1 TATTTTTAAAAATTATA
23527672 -ATTTTTAA
1 TATTTTTAA
23527680 TTTTTATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 8 0.38
17 7 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TATTTTTAAAAATTATA
Found at i:23527681 original size:13 final size:15
Alignment explanation
Indices: 23527649--23527679 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
23527639 TTATTTTTAA
23527649 AAATTATATATTTTT
1 AAATTATATATTTTT
23527664 AAATTATA-ATTTTT
1 AAATTATATATTTTT
23527678 AA
1 AA
23527680 TTTTTATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AAATTATATATTTTT
Found at i:23532940 original size:158 final size:158
Alignment explanation
Indices: 23532647--23532943 Score: 405
Period size: 158 Copynumber: 1.9 Consensus size: 158
23532637 ACACGAACTG
* * * *
23532647 TGAAATGAGCCTGCTCACACGAGTTGTGGGTCTAGATGTTGAGCTACACGATGGTGCTCACACGA
1 TGAAATGAGCCTGCTCACACGAGCTGTGGGTCAAGATGTTGAGCTACACAATGCTGCTCACACGA
** * * * * *
23532712 GTTGTGGAGAATCCACAATAATTACCGGATCTCAGCCATCGGTAAGACATTTAAGACTAGCACCC
66 ACTATGGAGAATCCACAATAATTACCGGATCTCAGCCATCAGTAAGACATATAAGACCAACACCC
*
23532777 CTATAACCTGTAAGGTTCACATGAGCTA
131 ATATAACCTGTAAGGTTCACATGAGCTA
* *
23532805 TGAAATGGGCTTGCTCACACGAGCTGTGGGTCAAGATGTTGAGCTACACAATGCTGCTCACACGA
1 TGAAATGAGCCTGCTCACACGAGCTGTGGGTCAAGATGTTGAGCTACACAATGCTGCTCACACGA
** ** * * *
23532870 ACTATGGAGAATCCGTAATAATTGTCGGATCTCAGCCATCAGTAGGACATATAGGACCAACACTC
66 ACTATGGAGAATCCACAATAATTACCGGATCTCAGCCATCAGTAAGACATATAAGACCAACACCC
23532935 ATATAACCT
131 ATATAACCT
23532944 ATAATATTGA
Statistics
Matches: 118, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
158 118 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (158 bp):
TGAAATGAGCCTGCTCACACGAGCTGTGGGTCAAGATGTTGAGCTACACAATGCTGCTCACACGA
ACTATGGAGAATCCACAATAATTACCGGATCTCAGCCATCAGTAAGACATATAAGACCAACACCC
ATATAACCTGTAAGGTTCACATGAGCTA
Found at i:23535627 original size:25 final size:23
Alignment explanation
Indices: 23535595--23535640 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
23535585 GTTAGATCCA
23535595 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
23535620 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
23535641 TCCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:23537717 original size:15 final size:16
Alignment explanation
Indices: 23537699--23537728 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
23537689 GTGTATAATA
23537699 AAATAAAAAT-AAAAT
1 AAATAAAAATGAAAAT
23537714 AAATAAAAATGAAAA
1 AAATAAAAATGAAAA
23537729 ATGAAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (16 bp):
AAATAAAAATGAAAAT
Found at i:23543296 original size:13 final size:13
Alignment explanation
Indices: 23543278--23543335 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
23543268 AAAAGGGAAA
23543278 AAAAATAAAATAT
1 AAAAATAAAATAT
*
23543291 AAAAATTAAAT-T
1 AAAAATAAAATAT
*
23543303 AAAAATGCAAATAAT
1 AAAAAT-AAAAT-AT
23543318 AAAACA-AAAATA-
1 AAAA-ATAAAATAT
23543330 AAAAAT
1 AAAAAT
23543336 GGCTAAAGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
11 1 0.03
12 11 0.30
13 15 0.41
14 4 0.11
15 5 0.14
16 1 0.03
ACGTcount: A:0.74, C:0.03, G:0.02, T:0.21
Consensus pattern (13 bp):
AAAAATAAAATAT
Found at i:23544424 original size:25 final size:23
Alignment explanation
Indices: 23544396--23544441 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
23544386 GTTGGATCCA
23544396 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
23544421 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
23544442 CCTAATTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:23546029 original size:15 final size:15
Alignment explanation
Indices: 23546009--23546042 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
23545999 AATTTGAAAG
23546009 GGGCAAGAGCTTGCA
1 GGGCAAGAGCTTGCA
23546024 GGGCAAGAGCTTGCA
1 GGGCAAGAGCTTGCA
23546039 GGGC
1 GGGC
23546043 TAGGCCACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.21, G:0.44, T:0.12
Consensus pattern (15 bp):
GGGCAAGAGCTTGCA
Found at i:23548201 original size:14 final size:14
Alignment explanation
Indices: 23548182--23548208 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23548172 CAGGAAACTA
23548182 AAATTGAATGGATT
1 AAATTGAATGGATT
23548196 AAATTGAATGGAT
1 AAATTGAATGGAT
23548209 CTTTGAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (14 bp):
AAATTGAATGGATT
Found at i:23548571 original size:27 final size:27
Alignment explanation
Indices: 23548539--23548592 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
23548529 TAATCAGAAC
23548539 TAAAATGGTGTGAAATTAGAATTAAAT
1 TAAAATGGTGTGAAATTAGAATTAAAT
*
23548566 TAAAATGGTGTGCAATTAGAATTAAAT
1 TAAAATGGTGTGAAATTAGAATTAAAT
23548593 CAGAATTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.46, C:0.02, G:0.19, T:0.33
Consensus pattern (27 bp):
TAAAATGGTGTGAAATTAGAATTAAAT
Found at i:23548609 original size:16 final size:17
Alignment explanation
Indices: 23548579--23548639 Score: 51
Period size: 16 Copynumber: 3.8 Consensus size: 17
23548569 AATGGTGTGC
23548579 AATTAGAATTAAATCAG
1 AATTAGAATTAAATCAG
*
23548596 AATTA-AATTCAATC--
1 AATTAGAATTAAATCAG
*
23548610 AATTAAAATTGAAAT-AG
1 AATTAGAATT-AAATCAG
23548627 AGATTA-AATTAAA
1 A-ATTAGAATTAAA
23548640 AATATGAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 14 0.38
17 10 0.27
18 4 0.11
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (17 bp):
AATTAGAATTAAATCAG
Found at i:23549525 original size:17 final size:17
Alignment explanation
Indices: 23549489--23549527 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
23549479 AGTTAATTGA
*
23549489 ATAGAAAGGACTAAATT
1 ATAGAAAGGACTAAAGT
23549506 ATAGAAAGGA-TAAAAGT
1 ATAGAAAGGACT-AAAGT
23549523 ATAGA
1 ATAGA
23549528 TGTTTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.56, C:0.03, G:0.21, T:0.21
Consensus pattern (17 bp):
ATAGAAAGGACTAAAGT
Found at i:23552883 original size:19 final size:20
Alignment explanation
Indices: 23552854--23552893 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
23552844 GTTTTCAATG
23552854 TTTAGGGTTTTATTTATTTA
1 TTTAGGGTTTTATTTATTTA
23552874 TTTA-GGTTTTATTTATTTA
1 TTTAGGGTTTTATTTATTTA
23552893 T
1 T
23552894 AAAATATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (20 bp):
TTTAGGGTTTTATTTATTTA
Found at i:23559272 original size:16 final size:16
Alignment explanation
Indices: 23559251--23559281 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23559241 CTACGACAAG
23559251 TTATATTAATTTTATT
1 TTATATTAATTTTATT
*
23559267 TTATATTATTTTTAT
1 TTATATTAATTTTAT
23559282 GAGTTTTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATATTAATTTTATT
Found at i:23559926 original size:16 final size:17
Alignment explanation
Indices: 23559907--23559940 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
23559897 GTCAATATCA
23559907 TAATATTA-AAGTTTAT
1 TAATATTAGAAGTTTAT
*
23559923 TAATATTAGAATTTTAT
1 TAATATTAGAAGTTTAT
23559940 T
1 T
23559941 TATTGTGACG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (17 bp):
TAATATTAGAAGTTTAT
Found at i:23561299 original size:22 final size:25
Alignment explanation
Indices: 23561273--23561332 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 25
23561263 AAAAAATACT
23561273 TATATTTTTTATTTTAAT-A-TTTA
1 TATATTTTTTATTTTAATAATTTTA
* **
23561296 -ATATCTAATA-TTTAATAATTTTA
1 TATATTTTTTATTTTAATAATTTTA
23561319 TATATTTTTTATTT
1 TATATTTTTTATTT
23561333 ATTGAAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
21 6 0.22
22 8 0.30
23 4 0.15
24 7 0.26
25 2 0.07
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (25 bp):
TATATTTTTTATTTTAATAATTTTA
Found at i:23561331 original size:24 final size:24
Alignment explanation
Indices: 23561273--23561334 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
23561263 AAAAAATACT
23561273 TATATTTTTTATTT-TAATATTTA
1 TATATTTTTTATTTATAATATTTA
* **
23561296 -ATATCTAATATTTAATAAT-TTTA
1 TATATTTTTTATTT-ATAATATTTA
23561319 TATATTTTTTATTTAT
1 TATATTTTTTATTTAT
23561335 TGAAATTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
22 10 0.33
23 6 0.20
24 14 0.47
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (24 bp):
TATATTTTTTATTTATAATATTTA
Found at i:23563431 original size:15 final size:15
Alignment explanation
Indices: 23563376--23563433 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
23563366 TCATCCATGC
*
23563376 TCGCAACACGAG-GT
1 TCGCAACACCAGTGT
* *
23563390 TCGTAACATCAGTGT
1 TCGCAACACCAGTGT
* *
23563405 TCGCAGCTCCAGTGT
1 TCGCAACACCAGTGT
23563420 TCGCAACACCAGTG
1 TCGCAACACCAGTG
23563434 CTCGAATCTT
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
14 9 0.26
15 25 0.74
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (15 bp):
TCGCAACACCAGTGT
Found at i:23568438 original size:3 final size:3
Alignment explanation
Indices: 23568424--23568454 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
23568414 TTCAAATAGC
*
23568424 TCT TCT TTT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
23568455 TTTATATAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TCT
Found at i:23571456 original size:18 final size:19
Alignment explanation
Indices: 23571419--23571456 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
23571409 TTCTTCTTCA
*
23571419 CTTTCTTTCCCTTGTGCCT
1 CTTTCTTTCCCTTGTCCCT
*
23571438 CTTTCTTT-GCTTGTCCCT
1 CTTTCTTTCCCTTGTCCCT
23571456 C
1 C
23571457 GAACCAATCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.00, C:0.37, G:0.11, T:0.53
Consensus pattern (19 bp):
CTTTCTTTCCCTTGTCCCT
Found at i:23581731 original size:18 final size:18
Alignment explanation
Indices: 23581703--23581744 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
23581693 ATTGAATTTC
23581703 TTGGCTTGTGCTCGCATGA
1 TTGG-TTGTGCTCGCATGA
*
23581722 TTGGTTGTGCTCGCGTGA
1 TTGGTTGTGCTCGCATGA
23581740 TTGGT
1 TTGGT
23581745 CCTCTAGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.07, C:0.17, G:0.36, T:0.40
Consensus pattern (18 bp):
TTGGTTGTGCTCGCATGA
Found at i:23582294 original size:79 final size:79
Alignment explanation
Indices: 23582163--23582321 Score: 264
Period size: 79 Copynumber: 2.0 Consensus size: 79
23582153 CAACCAATAA
*
23582163 ACACATTAAGGATACAATAAGTCTTCATTAAGGAGAAATGTCATGCCTTTTCACCTACATCAAAT
1 ACACATTAAGGATACAATAAGTCTTCATTAAGGAGAAATGTCATGCCTTTTCAACTACATCAAAT
23582228 CCTAATAAAGAGAC
66 CCTAATAAAGAGAC
* * *
23582242 ACACATTAAGGATACAATAAGTCTTCTTTAAGGAGAAATGTCATGCCTTTTCAACTACATTAGAT
1 ACACATTAAGGATACAATAAGTCTTCATTAAGGAGAAATGTCATGCCTTTTCAACTACATCAAAT
* *
23582307 CTTAATGAAGAGAC
66 CCTAATAAAGAGAC
23582321 A
1 A
23582322 TAACTCATTG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
79 74 1.00
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (79 bp):
ACACATTAAGGATACAATAAGTCTTCATTAAGGAGAAATGTCATGCCTTTTCAACTACATCAAAT
CCTAATAAAGAGAC
Found at i:23583355 original size:26 final size:25
Alignment explanation
Indices: 23583325--23583384 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 25
23583315 ATTATATTAC
*
23583325 TTTTTAATATAACTACCATAATATA
1 TTTTTAATAGAACTACCATAATATA
* *
23583350 TATTTTTATAGAACTACCGTAATATA
1 T-TTTTAATAGAACTACCATAATATA
*
23583376 TTTTGAATA
1 TTTTTAATA
23583385 ACTAATTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 7 0.24
26 22 0.76
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (25 bp):
TTTTTAATAGAACTACCATAATATA
Found at i:23584003 original size:15 final size:15
Alignment explanation
Indices: 23583983--23584015 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
23583973 TTTTCCTATA
23583983 AATTCAAATCCAACC
1 AATTCAAATCCAACC
23583998 AATTCAAATCCAACC
1 AATTCAAATCCAACC
23584013 AAT
1 AAT
23584016 AACTTCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.21
Consensus pattern (15 bp):
AATTCAAATCCAACC
Found at i:23584022 original size:19 final size:17
Alignment explanation
Indices: 23583983--23584026 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 17
23583973 TTTTCCTATA
23583983 AATTCAAATCCAACC--
1 AATTCAAATCCAACCAT
23583998 AATTCAAATCCAACCAAT
1 AATTCAAATCCAACC-AT
23584016 AACTTCAAATC
1 AA-TTCAAATC
23584027 TAAAATGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 15 0.60
18 2 0.08
19 8 0.32
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.23
Consensus pattern (17 bp):
AATTCAAATCCAACCAT
Found at i:23584261 original size:21 final size:21
Alignment explanation
Indices: 23584229--23584285 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
23584219 GCTTCCCTTG
* *
23584229 CTGCTGTCTCCGCTTGCCTCG
1 CTGCTGCCTCCGCTTGCCTCA
* * *
23584250 TTGCTGCTTCCGCTTGTCTCA
1 CTGCTGCCTCCGCTTGCCTCA
23584271 CTGCTGCCTCCGCTT
1 CTGCTGCCTCCGCTT
23584286 TAAGTTGTAG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.02, C:0.40, G:0.21, T:0.37
Consensus pattern (21 bp):
CTGCTGCCTCCGCTTGCCTCA
Found at i:23589741 original size:8 final size:8
Alignment explanation
Indices: 23589728--23589821 Score: 74
Period size: 8 Copynumber: 11.8 Consensus size: 8
23589718 TTGTTTTTAT
23589728 TAATTAAA
1 TAATTAAA
23589736 TAATTAAA
1 TAATTAAA
*
23589744 T-ATTTAA
1 TAATTAAA
23589751 T--TTAATA
1 TAATTAA-A
23589758 TAATTAAA
1 TAATTAAA
23589766 TAATTAAA
1 TAATTAAA
*
23589774 T-ATT--T
1 TAATTAAA
23589779 TCAATTAAA
1 T-AATTAAA
23589788 TAATTAAA
1 TAATTAAA
23589796 TTAAATTAAA
1 -T-AATTAAA
23589806 TAATTATATA
1 TAATTA-A-A
23589816 TAATTA
1 TAATTA
23589822 TTTACGAAAA
Statistics
Matches: 71, Mismatches: 4, Indels: 20
0.75 0.04 0.21
Matches are distributed among these distances:
5 1 0.01
6 3 0.04
7 14 0.20
8 31 0.44
9 8 0.11
10 14 0.20
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (8 bp):
TAATTAAA
Found at i:23589762 original size:30 final size:30
Alignment explanation
Indices: 23589728--23589807 Score: 110
Period size: 30 Copynumber: 2.6 Consensus size: 30
23589718 TTGTTTTTAT
23589728 TAATTAAATAATTAAATA-TTT-AATTTAATA
1 TAATTAAATAATTAAATATTTTCAA-TTAA-A
23589758 TAATTAAATAATTAAATATTTTCAATTAAA
1 TAATTAAATAATTAAATATTTTCAATTAAA
23589788 TAATTAAATTAAATTAAATA
1 TAATTAAA-T-AATTAAATA
23589808 ATTATATATA
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
30 27 0.59
31 8 0.17
32 11 0.24
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (30 bp):
TAATTAAATAATTAAATATTTTCAATTAAA
Found at i:23589763 original size:22 final size:20
Alignment explanation
Indices: 23589726--23589801 Score: 71
Period size: 22 Copynumber: 3.5 Consensus size: 20
23589716 GGTTGTTTTT
23589726 ATTAATTAAATAATTAAATA
1 ATTAATTAAATAATTAAATA
*
23589746 TTTAATTTAATATAATTAAATA
1 ATTAA-TTAA-ATAATTAAATA
* **
23589768 ATTAAATATTTTCAATTAAATA
1 ATTAATTA-AAT-AATTAAATA
23589790 ATTAAATTAAAT
1 ATT-AATTAAAT
23589802 TAAATAATTA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
20 4 0.09
21 7 0.16
22 28 0.65
23 4 0.09
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTAATTAAATAATTAAATA
Found at i:23589905 original size:102 final size:98
Alignment explanation
Indices: 23589737--23589927 Score: 235
Period size: 102 Copynumber: 1.9 Consensus size: 98
23589727 TTAATTAAAT
* * * *
23589737 AATTAAATATTTAATTTAATATAATTAAATAATTAAATATTTTCAATTAAATAATTAAATTAAAT
1 AATTAAATAGTTAATTAAATATAATTAAATAATTAAATATTGT--ATT-AATAATTAAATCAAAT
23589802 TAAATAA-TTATATATAATTATTTACGAAAATATTTTA
63 TAAATAATTTA-ATAT-ATTATTTACGAAAATATTTTA
23589839 AATTAAATAGTTAATTAAATATAATTAAATAATTAATCGATATTGT-TT-ATAATTAAATACATA
1 AATTAAATAGTTAATTAAATATAATTAAATAATTAA---ATATTGTATTAATAATTAAAT-CA-A
23589902 ATTAAATAATTTAATATATTATTTAC
61 ATTAAATAATTTAATATATTATTTAC
23589928 TTTAATATAA
Statistics
Matches: 79, Mismatches: 4, Indels: 13
0.82 0.04 0.14
Matches are distributed among these distances:
100 10 0.13
101 10 0.13
102 50 0.63
103 3 0.04
105 6 0.08
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.45
Consensus pattern (98 bp):
AATTAAATAGTTAATTAAATATAATTAAATAATTAAATATTGTATTAATAATTAAATCAAATTAA
ATAATTTAATATATTATTTACGAAAATATTTTA
Found at i:23590032 original size:18 final size:18
Alignment explanation
Indices: 23590011--23590923 Score: 183
Period size: 18 Copynumber: 49.6 Consensus size: 18
23590001 AATTAACATG
23590011 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** * *
23590029 ATTATTTACTTTAAAATA
1 ATTAAATAATTTAATATA
* *
23590047 ATTAAATAATTAAATCTTTTA
1 ATTAAATAATTTAA---TATA
23590068 ACTTAAAT-ATTTAAT-TA
1 A-TTAAATAATTTAATATA
** *
23590085 A-TCGATACTGTT--TATA
1 ATTAAATAAT-TTAATATA
23590101 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** * *
23590119 ATTATTTACTTTAAAATA
1 ATTAAATAATTTAATATA
*
23590137 ATTAAATAATTAAATATTTTA
1 ATTAAATAATTTAATA---TA
23590158 ACTTAAAT-ATTTAAT-TA
1 A-TTAAATAATTTAATATA
** *
23590175 A-TCGATACTGTT--TATA
1 ATTAAATAAT-TTAATATA
* *
23590191 ATTAAATACATAAATAAACATA
1 ATTAAATA-AT---TTAATATA
*
23590213 ATTAAATAATTTTATATA
1 ATTAAATAATTTAATATA
** *
23590231 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
* *
23590249 ATTAAATAATTAAATCTTTTA
1 ATTAAATAATTTAA---TATA
*
23590270 ACTTAAAT-ATTTAAT-CA
1 A-TTAAATAATTTAATATA
** *
23590287 A-TCGATACTGTT--TATA
1 ATTAAATAAT-TTAATATA
* * *
23590303 ATTAATACATAATTAAACATG
1 ATT-A-A-ATAATTTAATATA
23590324 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** * *
23590342 ATTATTTACTTTAAAATA
1 ATTAAATAATTTAATATA
* * *
23590360 ATTAAATACTTAAATCTTTTA
1 ATTAAATAATTTAA---TATA
23590381 ACTTAAAT-ATTTAAT-TA
1 A-TTAAATAATTTAATATA
** *
23590398 A-TCGATACTGTT--TAT-
1 ATTAAATAAT-TTAATATA
* * *
23590413 A-TACATAATTAAACATA
1 ATTAAATAATTTAATATA
23590430 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** *
23590448 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
* *
23590466 ATTAAATAATTAAATCTTTTAA
1 ATTAAATAATTTAA---TAT-A
23590488 ATTAAAT-ATTTAAT-TA
1 ATTAAATAATTTAATATA
** *
23590504 A-TCGATACTGTT--TATA
1 ATTAAATAAT-TTAATATA
*
23590520 ATTAAATACATAATTAAACATA
1 ATTAAATA-AT--TT-AATATA
23590542 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** *
23590560 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
* *
23590578 ATTAAATAATTAAATCT-
1 ATTAAATAATTTAATATA
*
23590595 TTTAAATTAACTATTTAAT-TA
1 ATTAAA-T-A--ATTTAATATA
** * *
23590616 A-TCGATACTGTTTATAATTA
1 ATTAAATAAT-TTAAT-A-TA
* * * *
23590636 ACTACATAATTAAACATA
1 ATTAAATAATTTAATATA
*
23590654 ATTAAATAATTCAATATA
1 ATTAAATAATTTAATATA
** *
23590672 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
* *
23590690 ATTAAATAATTAAATCTTTTAA
1 ATTAAATAATTTAA---TAT-A
23590712 ATTAAAT-ATTTAAT-TA
1 ATTAAATAATTTAATATA
* * *
23590728 ATCGATACTATTTATAAT-TA
1 AT-TA-AATAATT-TAATATA
* * * * *
23590748 AATACATAATTAAACATG
1 ATTAAATAATTTAATATA
23590766 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** *
23590784 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
* *
23590802 ATTAAATAATTAAATCTTTTA
1 ATTAAATAATTTAA---TATA
23590823 ACTTAAAT-ATTTAAT-TA
1 A-TTAAATAATTTAATATA
** *
23590840 A-TCGATACTGTT--TATA
1 ATTAAATAAT-TTAATATA
* *
23590856 ATTAAATACATATTAAACATG
1 ATTAAATA-AT-TT-AATATA
23590877 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** *
23590895 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
23590913 ATTAAATAATT
1 ATTAAATAATT
23590924 AAATCTTTTA
Statistics
Matches: 624, Mismatches: 180, Indels: 182
0.63 0.18 0.18
Matches are distributed among these distances:
14 1 0.00
15 30 0.05
16 31 0.05
17 59 0.09
18 312 0.50
19 14 0.02
20 23 0.04
21 86 0.14
22 68 0.11
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAAATAATTTAATATA
Found at i:23590048 original size:110 final size:110
Alignment explanation
Indices: 23589897--23590108 Score: 372
Period size: 111 Copynumber: 1.9 Consensus size: 110
23589887 ATAATTAAAT
*
23589897 ACATAATTAAATAATTTAATATATTATTTACTTTAATATAATTAAATAATT-AATCTTTTAACTT
1 ACATAATTAAATAATTTAATATATTATTTACTTTAAAATAATTAAATAATTAAATCTTTTAACTT
*
23589961 AAATATTTAATTAACCGATACTGTTTATACTTAAATACATAATTA
66 AAATATTTAATTAACCGATACTGTTTATAATTAAATACATAATTA
*
23590006 ACATGATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTAAATCTTTTAACT
1 ACATAATTAAATAATTTAATAT-ATTATTTACTTTAAAATAATTAAATAATTAAATCTTTTAACT
*
23590071 TAAATATTTAATTAATCGATACTGTTTATAATTAAATA
65 TAAATATTTAATTAACCGATACTGTTTATAATTAAATA
23590109 ATTTAATATA
Statistics
Matches: 97, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
109 21 0.22
110 28 0.29
111 48 0.49
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (110 bp):
ACATAATTAAATAATTTAATATATTATTTACTTTAAAATAATTAAATAATTAAATCTTTTAACTT
AAATATTTAATTAACCGATACTGTTTATAATTAAATACATAATTA
Found at i:23590113 original size:90 final size:90
Alignment explanation
Indices: 23590011--23590198 Score: 367
Period size: 90 Copynumber: 2.1 Consensus size: 90
23590001 AATTAACATG
*
23590011 ATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTAAATCTTTTAACTTAAAT
1 ATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTAAATATTTTAACTTAAAT
23590076 ATTTAATTAATCGATACTGTTTATA
66 ATTTAATTAATCGATACTGTTTATA
23590101 ATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTAAATATTTTAACTTAAAT
1 ATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTAAATATTTTAACTTAAAT
23590166 ATTTAATTAATCGATACTGTTTATA
66 ATTTAATTAATCGATACTGTTTATA
23590191 ATTAAATA
1 ATTAAATA
23590199 CATAAATAAA
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 97 1.00
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (90 bp):
ATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTAAATATTTTAACTTAAAT
ATTTAATTAATCGATACTGTTTATA
Found at i:23590114 original size:46 final size:46
Alignment explanation
Indices: 23590052--23590198 Score: 176
Period size: 46 Copynumber: 3.2 Consensus size: 46
23590042 AAATAATTAA
*
23590052 ATAATTAAATCTTTTAACTTAAATATTTAATTAATCGATACTGTTT
1 ATAATTAAATATTTTAACTTAAATATTTAATTAATCGATACTGTTT
* * * * * **
23590098 ATAATTAAATAATTTAA-TATAATTATTTACTTTAA--AATAAT-TAA
1 ATAATTAAATATTTTAACT-TAAATATTTA-ATTAATCGATACTGTTT
23590142 ATAATTAAATATTTTAACTTAAATATTTAATTAATCGATACTGTTT
1 ATAATTAAATATTTTAACTTAAATATTTAATTAATCGATACTGTTT
23590188 ATAATTAAATA
1 ATAATTAAATA
23590199 CATAAATAAA
Statistics
Matches: 80, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
43 4 0.05
44 26 0.32
45 10 0.12
46 36 0.45
47 4 0.05
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (46 bp):
ATAATTAAATATTTTAACTTAAATATTTAATTAATCGATACTGTTT
Found at i:23590221 original size:112 final size:112
Alignment explanation
Indices: 23590098--23590999 Score: 1595
Period size: 112 Copynumber: 8.1 Consensus size: 112
23590088 GATACTGTTT
* *
23590098 ATAATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTAAATATTTTAACTTA
1 ATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
*
23590163 AATATTTAATTAATCGATACTGTTTATAATTAAATACATAAATAAAC
66 AATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAAC
*
23590210 ATAATTAAATAATTTTATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
1 ATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
*
23590275 AATATTTAATCAATCGATACTGTTTATAATT-AATACATAATTAAAC
66 AATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAAC
* * *
23590321 ATGATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATACTTAAATCTTTTAACTTA
1 ATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
23590386 AATATTTAATTAATCGATACTG-TT-T-A-T--ATACATAATTAAAC
66 AATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAAC
*
23590427 ATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAATTA
1 ATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
23590492 AATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAAC
66 AATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAAC
*
23590539 ATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAATTA
1 ATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
* *
23590604 ACTATTTAATTAATCGATACTGTTTATAATTAACTACATAATTAAAC
66 AATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAAC
* *
23590651 ATAATTAAATAATTCAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAATTA
1 ATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
*
23590716 AATATTTAATTAATCGATACTATTTATAATTAAATACATAATTAAAC
66 AATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAAC
*
23590763 ATGATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
1 ATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
23590828 AATATTTAATTAATCGATACTGTTTATAATTAAATACAT-ATTAAAC
66 AATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAAC
*
23590874 ATGATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
1 ATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
23590939 AATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAAC
66 AATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAAC
23590986 ATAATTAAATAATT
1 ATAATTAAATAATT
23591000 AAATCTTTTA
Statistics
Matches: 758, Mismatches: 25, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
106 97 0.13
107 3 0.00
108 2 0.00
109 2 0.00
110 3 0.00
111 207 0.27
112 444 0.59
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.44
Consensus pattern (112 bp):
ATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTA
AATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAAC
Found at i:23590256 original size:90 final size:88
Alignment explanation
Indices: 23590011--23590234 Score: 259
Period size: 90 Copynumber: 2.5 Consensus size: 88
23590001 AATTAACATG
* * ** * *
23590011 ATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTAAATCTTTTAACTTAAAT
1 ATTAAATAATTAAACATAATTAAATAATTTAAAATAATTAAATAATTAAA--TATTAACTTAAAT
23590076 ATTTAATTAATCGATACTGTTTATA
64 ATTTAATTAATCGATACTGTTTATA
* * ** *
23590101 ATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTAAATATTTTAACTTAAAT
1 ATTAAATAATTAAACATAATTAAATAATTTAAAATAATTAAATAATTAAATA--TTAACTTAAAT
23590166 ATTTAATTAATCGATACTGTTTATA
64 ATTTAATTAATCGATACTGTTTATA
* *
23590191 ATTAAATACATAAATAAACATAATTAAATAATTTTATATAATTA
1 ATTAAATA-AT---TAAACATAATTAAATAATTTAAAATAATTA
23590235 TTTACTTTAA
Statistics
Matches: 120, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
88 1 0.01
90 94 0.78
91 2 0.02
94 23 0.19
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (88 bp):
ATTAAATAATTAAACATAATTAAATAATTTAAAATAATTAAATAATTAAATATTAACTTAAATAT
TTAATTAATCGATACTGTTTATA
Found at i:23590764 original size:553 final size:528
Alignment explanation
Indices: 23589868--23590999 Score: 1761
Period size: 553 Copynumber: 2.1 Consensus size: 528
23589858 TATAATTAAA
* * *
23589868 TAATTAATCGATATTGTTTATA-A-TTAA--ATACATAATTAAATAATTTAATATATTATTTACT
1 TAATTAATCGATACTGTTTATATACATAATTAAACATAATTAAATAATTTAATATATTATTTACT
* *
23589929 TTAATATAATTAAATAATTAATCTTTTAACTTAAATATTTAATTAACCGATACTGTTTATACTTA
66 TTAATATAATTAAATAATTAATCTTTTAAATTAAATATTTAATTAACCGATACTGTTTATAATTA
*
23589994 AATACATAATTAACATGATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTA
131 AATACATAATTAACATAATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTA
*
23590059 AATCTTTTAACTTAAATATTTAATTAATCGATACTGTTTATAATTAAATAATTTAATATAATTAT
196 AATCTTTTAAATTAAATATTTAATTAATCGATACTGTTTATAATTAAATAATTTAATATAATTAT
* *
23590124 TTACTTTAAAATAATTAAATAATTAAATATTTTAACTTAAATATTTAATTAATCGATACTGTTTA
261 TTACTTTAAAATAATTAAATAATTAAATATTTTAAATTAAATATTTAATTAATCGATACTATTTA
*
23590189 TAATTAAATACATAAATAAACATAATTAAATAATTTTATATAATTATTTACTTTAATATAATTAA
326 TAATTAAATACATAAATAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAA
23590254 ATAATTAAATCTTTTAACTTAAATATTTAATCAATCGATACTGTTTATAATT-AATACATAATTA
391 ATAATTAAATCTTTTAACTTAAATATTTAATCAATCGATACTGTTTATAATTAAATACAT-ATTA
*
23590318 AACATGATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATACTTAAATCTTTTAAC
455 AACATGATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTAAATCTTTTAAC
23590383 TTAAATATT
520 TTAAATATT
23590392 TAATTAATCGATACTGTTTATATACATAATTAAACATAATTAAATAATTTAATATAATTATTTAC
1 TAATTAATCGATACTGTTTATATACATAATTAAACATAATTAAATAATTTAATAT-ATTATTTAC
*
23590457 TTTAATATAATTAAATAATTAAATCTTTTAAATTAAATATTTAATTAATCGATACTGTTTATAAT
65 TTTAATATAATTAAATAATT-AATCTTTTAAATTAAATATTTAATTAACCGATACTGTTTATAAT
*
23590522 TAAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAA
129 TAAATACATAATT-AACATAATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAA
*
23590587 TTAAATCTTTTAAATTAACTATTTAATTAATCGATACTGTTTATAATTAACTACATAATTAAACA
193 TTAAATCTTTTAAATTAAATATTTAATTAATCGATACTG-------TT---T--ATAATT----A
* *
23590652 TAATTAAATAATTCAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAATTAA
242 -AA-T-AAT--TT-AATATAATTATTTACTTTAAAATAATTAAATAATTAAATATTTTAAATTAA
* *
23590717 ATATTTAATTAATCGATACTATTTATAATTAAATACATAATTAAACATGATTAAATAATTTAATA
301 ATATTTAATTAATCGATACTATTTATAATTAAATACATAAATAAACATAATTAAATAATTTAATA
*
23590782 TAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAATCGATA
366 TAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATCAATCGATA
*
23590847 CTGTTTATAATTAAATACATATTAAACATGATTAAATAATTTAATATAATTATTTACTTTAATAT
431 CTGTTTATAATTAAATACATATTAAACATGATTAAATAATTTAATATAATTATTTACTTTAAAAT
23590912 AATTAAATAATTAAATCTTTTAACTTAAATATT
496 AATTAAATAATTAAATCTTTTAACTTAAATATT
23590945 TAATTAATCGATACTGTTTATAATTAAATACATAATTAAACATAATTAAATAATT
1 TAATTAATCGATACTG-TT-T-A-T--ATACATAATTAAACATAATTAAATAATT
23591000 AAATCTTTTA
Statistics
Matches: 552, Mismatches: 20, Indels: 37
0.91 0.03 0.06
Matches are distributed among these distances:
524 21 0.04
525 1 0.00
526 3 0.01
528 23 0.04
529 29 0.05
530 54 0.10
531 86 0.16
538 2 0.00
541 1 0.00
543 6 0.01
547 1 0.00
548 2 0.00
549 1 0.00
550 3 0.01
552 2 0.00
553 277 0.50
554 9 0.02
555 1 0.00
556 1 0.00
557 1 0.00
559 28 0.05
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (528 bp):
TAATTAATCGATACTGTTTATATACATAATTAAACATAATTAAATAATTTAATATATTATTTACT
TTAATATAATTAAATAATTAATCTTTTAAATTAAATATTTAATTAACCGATACTGTTTATAATTA
AATACATAATTAACATAATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTA
AATCTTTTAAATTAAATATTTAATTAATCGATACTGTTTATAATTAAATAATTTAATATAATTAT
TTACTTTAAAATAATTAAATAATTAAATATTTTAAATTAAATATTTAATTAATCGATACTATTTA
TAATTAAATACATAAATAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAA
ATAATTAAATCTTTTAACTTAAATATTTAATCAATCGATACTGTTTATAATTAAATACATATTAA
ACATGATTAAATAATTTAATATAATTATTTACTTTAAAATAATTAAATAATTAAATCTTTTAACT
TAAATATT
Found at i:23590948 original size:26 final size:26
Alignment explanation
Indices: 23590919--23591027 Score: 72
Period size: 32 Copynumber: 4.3 Consensus size: 26
23590909 TATAATTAAA
23590919 TAATTAAATCTTTTAACTTAAATATT
1 TAATTAAATCTTTTAACTTAAATATT
* **
23590945 TAATTAATCGATACTGTTTATAATTAAATACA
1 TAATTAA---AT-CT-TTTA-ACTTAAATATT
*
23590977 TAATTAAA-C--ATAA-TT-AA-A--
1 TAATTAAATCTTTTAACTTAAATATT
23590995 TAATTAAATCTTTTAACTTAAATATT
1 TAATTAAATCTTTTAACTTAAATATT
23591021 TAATTAA
1 TAATTAA
23591028 TTGATACTGT
Statistics
Matches: 64, Mismatches: 5, Indels: 28
0.66 0.05 0.29
Matches are distributed among these distances:
18 8 0.12
19 1 0.02
20 1 0.02
21 5 0.08
22 4 0.06
23 3 0.05
24 3 0.05
26 14 0.22
27 1 0.02
29 3 0.05
30 2 0.03
31 4 0.06
32 15 0.23
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (26 bp):
TAATTAAATCTTTTAACTTAAATATT
Found at i:23590993 original size:76 final size:76
Alignment explanation
Indices: 23590910--23591058 Score: 289
Period size: 76 Copynumber: 2.0 Consensus size: 76
23590900 TTACTTTAAT
23590910 ATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAATCGATACTGTTTATAATTAAATA
1 ATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAATCGATACTGTTTATAATTAAATA
23590975 CATAATTAAAC
66 CATAATTAAAC
*
23590986 ATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAATTGATACTGTTTATAATTAAATA
1 ATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAATCGATACTGTTTATAATTAAATA
23591051 CATAATTA
66 CATAATTA
23591059 TTTAATTATT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.44
Consensus pattern (76 bp):
ATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAATCGATACTGTTTATAATTAAATA
CATAATTAAAC
Found at i:23592672 original size:53 final size:51
Alignment explanation
Indices: 23592617--23592731 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 51
23592607 AATAGAAGCG
*
23592617 GGTTCTGAGGGTGAAGAGAGAACAGAGTGAGGGGAACAGAAGCGGGTTCT--
1 GGTTCTG-GGGTGAAGAGAGAACAGAGTGAGGGAAACAGAAGCGGGTTCTGC
* *
23592667 -G--C--GGGTGAAGAGGGAACGGAGTGAGGGAAACAGAAGCGGGTTCTGC
1 GGTTCTGGGGTGAAGAGAGAACAGAGTGAGGGAAACAGAAGCGGGTTCTGC
23592713 AGGTTCTGGGGGTGAAGAG
1 -GGTTCT-GGGGTGAAGAG
23592732 GGTTCTGGGG
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
44 39 0.74
47 1 0.02
48 1 0.02
49 1 0.02
50 1 0.02
53 10 0.19
ACGTcount: A:0.28, C:0.10, G:0.47, T:0.15
Consensus pattern (51 bp):
GGTTCTGGGGTGAAGAGAGAACAGAGTGAGGGAAACAGAAGCGGGTTCTGC
Found at i:23592712 original size:44 final size:44
Alignment explanation
Indices: 23592566--23592712 Score: 222
Period size: 44 Copynumber: 3.3 Consensus size: 44
23592556 GATCGGCTCG
* * * *
23592566 AGAAGCGGTTTTTGGGGGTGAAGAGGGAACGGAGTGAGGGGAAT
1 AGAAGCGGGTTCTGCGGGTGAAGAGGGAACGGAGTGAGGGGAAC
* * *
23592610 AGAAGCGGGTTCTGAGGGTGAAGAGAGAACAGAGTGAGGGGAAC
1 AGAAGCGGGTTCTGCGGGTGAAGAGGGAACGGAGTGAGGGGAAC
*
23592654 AGAAGCGGGTTCTGCGGGTGAAGAGGGAACGGAGTGAGGGAAAC
1 AGAAGCGGGTTCTGCGGGTGAAGAGGGAACGGAGTGAGGGGAAC
23592698 AGAAGCGGGTTCTGC
1 AGAAGCGGGTTCTGC
23592713 AGGTTCTGGG
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 93 1.00
ACGTcount: A:0.29, C:0.10, G:0.47, T:0.14
Consensus pattern (44 bp):
AGAAGCGGGTTCTGCGGGTGAAGAGGGAACGGAGTGAGGGGAAC
Found at i:23592735 original size:18 final size:18
Alignment explanation
Indices: 23592714--23592748 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23592704 GGGTTCTGCA
*
23592714 GGTTCTGGGGGTGAAGAG
1 GGTTCTGGGGGCGAAGAG
23592732 GGTTCTGGGGGCGAAGA
1 GGTTCTGGGGGCGAAGA
23592749 CAACTCTGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.09, G:0.54, T:0.20
Consensus pattern (18 bp):
GGTTCTGGGGGCGAAGAG
Found at i:23593955 original size:41 final size:41
Alignment explanation
Indices: 23593834--23594108 Score: 276
Period size: 41 Copynumber: 6.8 Consensus size: 41
23593824 TTTAAATAAA
** * *
23593834 TTAGCGGCGCTCATGGGAAAGCGCCACTAATG-CAC-ACCT
1 TTAGCGGCGCTTGTGGGAAAGCGCCGCTAATGACCCGACCT
* * * * *
23593873 TTAGCGGCGCTTATTAGAAAAGTGCCGCTAATGACCTGACCT
1 TTAGCGGCGCTT-GTGGGAAAGCGCCGCTAATGACCCGACCT
23593915 TTAGCGGCGCTTGTGGGAAAGCGCCGCTAATGACCCGACCT
1 TTAGCGGCGCTTGTGGGAAAGCGCCGCTAATGACCCGACCT
*
23593956 TTAGCGGCGCTTGTGGTG-AAGCGCCGCTAATGACCCCACCT
1 TTAGCGGCGCTTGTGG-GAAAGCGCCGCTAATGACCCGACCT
* * *
23593997 TTAGCGGTGCTTGTGGTG-AAGCGGCGCTAATGACCCGATCT
1 TTAGCGGCGCTTGTGG-GAAAGCGCCGCTAATGACCCGACCT
* * ***
23594038 TTAGCGGGGCTT-TGGGGAAGCGCCGCTAATG-CTTTACCT
1 TTAGCGGCGCTTGTGGGAAAGCGCCGCTAATGACCCGACCT
* * *
23594077 TTTGCGGCGCATT-AGGAAAAGCGCCGCTAATG
1 TTAGCGGCGC-TTGTGGGAAAGCGCCGCTAATG
23594109 CTTTACCTTT
Statistics
Matches: 201, Mismatches: 29, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
39 24 0.12
40 49 0.24
41 111 0.55
42 17 0.08
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (41 bp):
TTAGCGGCGCTTGTGGGAAAGCGCCGCTAATGACCCGACCT
Found at i:23596161 original size:36 final size:36
Alignment explanation
Indices: 23596121--23596191 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
23596111 TGTGAAAGTG
23596121 AATATGAGGGTATGTTATTT-ATGCCATGTAACAGTA
1 AATATGAGGGTATGTT-TTTCATGCCATGTAACAGTA
* *
23596157 AATATGTGGGTATGTTTTTCATGCCATGTGACAGT
1 AATATGAGGGTATGTTTTTCATGCCATGTAACAGT
23596192 GATTATATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 3 0.09
36 29 0.91
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (36 bp):
AATATGAGGGTATGTTTTTCATGCCATGTAACAGTA
Found at i:23599463 original size:109 final size:108
Alignment explanation
Indices: 23599266--23599464 Score: 301
Period size: 109 Copynumber: 1.8 Consensus size: 108
23599256 TTACTATGAT
** *
23599266 CCGTTGGTTAATCCAACTAGAGATGGGTTCACTATTTTTTTTGTCAATTAATCTGACTAGTGCTG
1 CCGTTGGTTAATCCAACTAGAGATGGGTTCACTATTTTTTTCATCAATTAACCTGACTAGTGCTG
* *
23599331 GGCACACCTTTGTCGGTTTATCCGACTATCGCTGGGCATAATA
66 GGCACACATTCGTCGGTTTATCCGACTATCGCTGGGCATAATA
* *
23599374 CCGTTGGTTAATCCAACTAGAGCTGGGCTT-ACTATTTTATTTCATCAGTTAACCTGACTAGTGC
1 CCGTTGGTTAATCCAACTAGAGATGGG-TTCACTATTTT-TTTCATCAATTAACCTGACTAGTGC
*
23599438 TGGGCATACATTCGTCGGTTTATCCGA
64 TGGGCACACATTCGTCGGTTTATCCGA
23599465 TTAGCACTGG
Statistics
Matches: 81, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
108 34 0.42
109 47 0.58
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (108 bp):
CCGTTGGTTAATCCAACTAGAGATGGGTTCACTATTTTTTTCATCAATTAACCTGACTAGTGCTG
GGCACACATTCGTCGGTTTATCCGACTATCGCTGGGCATAATA
Found at i:23601014 original size:70 final size:71
Alignment explanation
Indices: 23600900--23601042 Score: 270
Period size: 70 Copynumber: 2.0 Consensus size: 71
23600890 GTGAGCAAAC
23600900 TTCGTCCGTTTTTAGTAATTTTTATGTTTTTGAGTCCGTATTAGCTTAATTTAGCTAACCCAATG
1 TTCGTCCGTTTTTAGTAATTTTTATGTTTTTGAGTCCGTATTAGCTTAATTTAGCTAACCCAATG
23600965 ACTAAT
66 ACTAAT
*
23600971 TTCGTCCGTTTTTAGTAA-TTTTATGTTTTTGAGTCCGTATTAGCTTAATTTCGCTAACCCAATG
1 TTCGTCCGTTTTTAGTAATTTTTATGTTTTTGAGTCCGTATTAGCTTAATTTAGCTAACCCAATG
23601035 ACTAAT
66 ACTAAT
23601041 TT
1 TT
23601043 GTGAATCTGA
Statistics
Matches: 71, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
70 53 0.75
71 18 0.25
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.47
Consensus pattern (71 bp):
TTCGTCCGTTTTTAGTAATTTTTATGTTTTTGAGTCCGTATTAGCTTAATTTAGCTAACCCAATG
ACTAAT
Found at i:23601070 original size:70 final size:69
Alignment explanation
Indices: 23600926--23601070 Score: 168
Period size: 70 Copynumber: 2.1 Consensus size: 69
23600916 AATTTTTATG
* * * **
23600926 TTTTTGAGTCCGTATTAGCTTAATTTAGCTAACCCAATGACTAATTTCGTCCGTTTTTAGTAATT
1 TTTTTGAGTCCGTATTAGCTTAATTTAGCTAACCCAATGACTAATTTCGT-CGATCTGACAAATT
* *
23600991 TTATG
65 TAATA
*
23600996 TTTTTGAGTCCGTATTAGCTTAATTTCGCTAACCCAATGACTAATTT-GT-GAATCTGACAAATG
1 TTTTTGAGTCCGTATTAGCTTAATTTAGCTAACCCAATGACTAATTTCGTCG-ATCTGACAAAT-
23601059 TTAAATA
64 TT-AATA
23601066 TTTTT
1 TTTTT
23601071 CAATTGATTA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
67 1 0.02
68 6 0.09
69 4 0.06
70 53 0.83
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44
Consensus pattern (69 bp):
TTTTTGAGTCCGTATTAGCTTAATTTAGCTAACCCAATGACTAATTTCGTCGATCTGACAAATTT
AATA
Found at i:23601699 original size:26 final size:26
Alignment explanation
Indices: 23601670--23601773 Score: 102
Period size: 26 Copynumber: 4.0 Consensus size: 26
23601660 GCTAGAGTGT
*
23601670 AATTCTATCTGGGCTCGTATGAGCTA
1 AATTCTATCTGGGCTCGTAAGAGCTA
* * *
23601696 AATTCTATCTAGACTCATAAGAGCTA
1 AATTCTATCTGGGCTCGTAAGAGCTA
* * * *
23601722 ATTTCTGTTTGGGCTTGTAAGAGCTA
1 AATTCTATCTGGGCTCGTAAGAGCTA
* * *
23601748 AATTTTGTCTGTGCTCGTAA-AGCTA
1 AATTCTATCTGGGCTCGTAAGAGCTA
23601773 A
1 A
23601774 CCTCTATAAT
Statistics
Matches: 62, Mismatches: 16, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
25 6 0.10
26 56 0.90
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (26 bp):
AATTCTATCTGGGCTCGTAAGAGCTA
Found at i:23609518 original size:109 final size:109
Alignment explanation
Indices: 23609327--23609568 Score: 367
Period size: 109 Copynumber: 2.2 Consensus size: 109
23609317 ACTATGATCC
* * *
23609327 GTTGGTTAATCCAACTAGAGCTGGGCTCACTATTTTCTTTCGTCAGTTAATCTGACTAGTGCTGG
1 GTTGGTTAATCCAACTAGAGCTGGGCTCACTATTTTATCTCGTCAGTTAACCTGACTAGTGCTGG
* ** * *
23609392 GCACACCTTTGTTGGTTTATCCGACTAGCGTTGGGCGTAATATA
66 GCACACATTTGTTGGTTTATCCGACTAGCACTGGGCATAAAATA
* *
23609436 GTTGGTTAATCCAATTAGAGCTGGGCTCACTATTTTATCTCGTTAGTTAACCTGACTAGTGCTGG
1 GTTGGTTAATCCAACTAGAGCTGGGCTCACTATTTTATCTCGTCAGTTAACCTGACTAGTGCTGG
* * *
23609501 GCATACATTTGTTGGTTTATTCGACTAGCACTGGGCATAAAATC
66 GCACACATTTGTTGGTTTATCCGACTAGCACTGGGCATAAAATA
23609545 GTTGGTTAATCCAACTAGAGCTGG
1 GTTGGTTAATCCAACTAGAGCTGG
23609569 CCTTACTTTT
Statistics
Matches: 119, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
109 119 1.00
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (109 bp):
GTTGGTTAATCCAACTAGAGCTGGGCTCACTATTTTATCTCGTCAGTTAACCTGACTAGTGCTGG
GCACACATTTGTTGGTTTATCCGACTAGCACTGGGCATAAAATA
Found at i:23609562 original size:34 final size:34
Alignment explanation
Indices: 23609497--23609562 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 34
23609487 CTGACTAGTG
* * * * * *
23609497 CTGGGCATACATTTGTTGGTTTATTCGACTAGCA
1 CTGGGCATAAAATCGTTGGTTAATCCAACTAGCA
23609531 CTGGGCATAAAATCGTTGGTTAATCCAACTAG
1 CTGGGCATAAAATCGTTGGTTAATCCAACTAG
23609563 AGCTGGCCTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (34 bp):
CTGGGCATAAAATCGTTGGTTAATCCAACTAGCA
Found at i:23612880 original size:8 final size:9
Alignment explanation
Indices: 23612859--23612894 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
23612849 TTATTTAGAT
23612859 TTTTTAAAA
1 TTTTTAAAA
23612868 TTTTTAAAA
1 TTTTTAAAA
23612877 TTTTTAAAA
1 TTTTTAAAA
23612886 -TTTTAAAA
1 TTTTTAAAA
23612894 T
1 T
23612895 AATAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:23612880 original size:18 final size:17
Alignment explanation
Indices: 23612859--23612894 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
23612849 TTATTTAGAT
23612859 TTTTTAAAATTTTTAAAA
1 TTTTTAAAA-TTTTAAAA
23612877 TTTTTAAAATTTTAAAA
1 TTTTTAAAATTTTAAAA
23612894 T
1 T
23612895 AATAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTTAAAATTTTAAAA
Found at i:23613166 original size:18 final size:18
Alignment explanation
Indices: 23613134--23613168 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23613124 TACGCATTTT
**
23613134 GAACATAAACTATAAAAC
1 GAACATAAAAAATAAAAC
23613152 GAACATAAAAAATAAAA
1 GAACATAAAAAATAAAA
23613169 AAAAAATTGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.11, G:0.06, T:0.14
Consensus pattern (18 bp):
GAACATAAAAAATAAAAC
Found at i:23615509 original size:25 final size:26
Alignment explanation
Indices: 23615462--23615510 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
23615452 TCGATTTCTG
* * *
23615462 GTTTTTCAGATCTTATTTATTTAATT
1 GTTTTTCAGATATGATGTATTTAATT
23615488 GTTTTTCAGATATGATGT-TTTAA
1 GTTTTTCAGATATGATGTATTTAA
23615511 ATAAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 5 0.25
26 15 0.75
ACGTcount: A:0.24, C:0.06, G:0.12, T:0.57
Consensus pattern (26 bp):
GTTTTTCAGATATGATGTATTTAATT
Found at i:23615599 original size:50 final size:51
Alignment explanation
Indices: 23615476--23615601 Score: 131
Period size: 51 Copynumber: 2.6 Consensus size: 51
23615466 TTCAGATCTT
* *
23615476 ATTTATTTAA-TTG-TTT-TTCAGATAT-GATG-TTTTAAATAAATATAAAT
1 ATTTATTTAATTTGATTTGTTCAGATCTAG-TGTTTTTAAATAAATATAAAA
* * *
23615523 ATTTATTTAATTTGTTTTGTTTAGATCTAGTGTTTTTACATAAATATAAAA
1 ATTTATTTAATTTGATTTGTTCAGATCTAGTGTTTTTAAATAAATATAAAA
*
23615574 ATTTGTTT-ATATT-ATTTGTTCAGATCTA
1 ATTTATTTAAT-TTGATTTGTTCAGATCTA
23615602 ATATTTAATA
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
47 10 0.15
48 3 0.05
49 3 0.05
50 24 0.36
51 26 0.39
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.53
Consensus pattern (51 bp):
ATTTATTTAATTTGATTTGTTCAGATCTAGTGTTTTTAAATAAATATAAAA
Found at i:23616807 original size:221 final size:220
Alignment explanation
Indices: 23616425--23617779 Score: 1569
Period size: 221 Copynumber: 6.2 Consensus size: 220
23616415 CAATTATCAC
**
23616425 CTTTAACGGATGGAGGAAAAAAATGACAAACTA-TTTTTTATCTGAAAG--TTTTATTCATGACC
1 CTTTAACGGATGGAGG-AAAAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTC
* * *
23616487 AATTAGCATAAAACTATTTTTTTCTTGTTCAAGAAAAGACATTTAACCACAAGAGTTAAATGAGC
65 AATTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAGACATTTAACCACAAGAGTTAAATGAAC
* * * * *
23616552 TAATAAAGATAAGATTTCGATTCTCACCTTGATATAAAATAATTTAAAACTTGTGACCAGCATCT
130 TAATAAAGATAAGATTTCGATTCTCACATTAATATAGAGTAATTTAAAACTTGTGACCAACATCT
*
23616617 ACATTTTAATGGATGTATAGAATTTG
195 ACATCTTAATGGATGTATAGAATTTG
*
23616643 CTTTAACGGATGGAGGAAAAAATGACAAACTATTTCTTTATCTGAAAGTATTTTATTCATGGTCA
1 CTTTAACGGATGGAGGAAAAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCA
*
23616708 ATTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAAGACATTTAACCACGAA-AGTTAAATGAG
66 ATTAGCATAAAACTATTTTTTTCTTGTT-AAAAAAAAGACATTTAACCAC-AAGAGTTAAATGAA
* * * * *
23616772 CTAATAAAGATAAGATTTCGATTCTCATATTGATATAGACTAATTTAAAACTTGTGACCAACGTT
129 CTAATAAAGATAAGATTTCGATTCTCACATTAATATAGAGTAATTTAAAACTTGTGACCAACATC
*
23616837 TACATCTTAATGGATGTATAAAATTTG
194 TACATCTTAATGGATGTATAGAATTTG
* * ** * *
23616864 TTTTTAATGGATGGAATAAAAAACGACAAACTATTTTTTTATCTGAATGTATTTTATTCATGGTC
1 -CTTTAACGGATGGAGGAAAAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTC
* * * *
23616929 AATTAGCATAAAACTATTTTTATCTTGTTAAAAAAAAGTA-ATATAACCACGAGAGTTAAATGAG
65 AATTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAG-ACATTTAACCACAAGAGTTAAATGAA
* *
23616993 CTAATAAAGATAAGATTTCAATTCTCGCATTAATATAGAGTAATTTAAAACTTGTGACCAACATC
129 CTAATAAAGATAAGATTTCGATTCTCACATTAATATAGAGTAATTTAAAACTTGTGACCAACATC
* *
23617058 TACATCTTAATGGATATATAGAATTTA
194 TACATCTTAATGGATGTATAGAATTTG
* * * *
23617085 CTTTAACAGATGAAGGAAATTAATGACAAACTATTTTTTTATGTGAAAGTATTTTATTCATGGTC
1 CTTTAACGGATGGAGGAAA-AAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTC
* *
23617150 AATTAGCATAAAACAATTTTTTTTCTTGTTAAAAACAAAG--A-TAAACCACAAGAGTTAAATGA
65 AATTAGCATAAAACTA-TTTTTTTCTTGTTAAAAA-AAAGACATTTAACCACAAGAGTTAAATGA
* * **
23617212 ACTAATAAAAATAAGATTTCG------------ATATAGAGTAATTTAAAACTTGTGAGCAATGT
128 ACTAATAAAGATAAGATTTCGATTCTCACATTAATATAGAGTAATTTAAAACTTGTGACCAACAT
* *
23617265 TTTCATCTTAATGGATGTATAGAATTTG
193 CTACATCTTAATGGATGTATAGAATTTG
* * * * * *
23617293 GTTTAACAGATGGAGGAAAAAAATGACAAATTGTTTTTTTATTTGAAAATATTTTATTCAT-G--
1 CTTTAACGGATGGAGG-AAAAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTC
** ** * **
23617355 -ATTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAGACATTTAATTATGATAGTTAAAAAAAC
65 AATTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAGACATTTAACCACAAGAGTTAAATGAAC
* * * * * *
23617419 TAATAAAAATGAA-ATTTCAATTCTCGTC-TTAATATAAAGTAATTTAAAACTTGTGTCCAACGT
130 TAATAAAGAT-AAGATTTCGATTCTC-ACATTAATATAGAGTAATTTAAAACTTGTGACCAACAT
*
23617482 CTACATATTAATGGATGTATAGAATTTG
193 CTACATCTTAATGGATGTATAGAATTTG
* * * * * *
23617510 TTTTAACGGACGAAGGAAATAAATGACAAACTATTTTTTTATCTGAAGGTATATTATTCATGATC
1 CTTTAACGGATGGAGGAAA-AAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTC
* *
23617575 AATTAACATAAAACTATTTTTTTCTTGTTAAATAAAAA-ACATTTAACTACAAGAGTTAAATGAA
65 AATTAGCATAAAACTATTTTTTTCTTGTTAAA-AAAAAGACATTTAACCACAAGAGTTAAATGAA
* * * * * * ** *
23617639 TTAATAAAGATAAAATTTCGATTTTCGCCTTAATATAGAATAATTTAAAACTTGAAACCAGA-GT
129 CTAATAAAGATAAGATTTCGATTCTCACATTAATATAGAGTAATTTAAAACTTGTGACCA-ACAT
* * *
23617703 CTATATCTTAATAGATGTATTGAATTTG
193 CTACATCTTAATGGATGTATAGAATTTG
* * * *
23617731 CTTTGACAGATGGAGAAAAAAAATGACAAATTATTTTTTTTATCTGAAA
1 CTTTAACGGATGGAG-GAAAAAATGACAAACTA-TTTTTTTATCTGAAA
23617780 ATATGACATT
Statistics
Matches: 975, Mismatches: 123, Indels: 74
0.83 0.10 0.06
Matches are distributed among these distances:
202 4 0.00
203 18 0.02
204 15 0.02
205 30 0.03
206 2 0.00
207 1 0.00
208 103 0.11
209 3 0.00
216 3 0.00
217 116 0.12
218 30 0.03
220 94 0.10
221 424 0.43
222 128 0.13
223 4 0.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (220 bp):
CTTTAACGGATGGAGGAAAAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCA
ATTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAGACATTTAACCACAAGAGTTAAATGAACT
AATAAAGATAAGATTTCGATTCTCACATTAATATAGAGTAATTTAAAACTTGTGACCAACATCTA
CATCTTAATGGATGTATAGAATTTG
Found at i:23617597 original size:425 final size:429
Alignment explanation
Indices: 23616426--23617783 Score: 1591
Period size: 425 Copynumber: 3.1 Consensus size: 429
23616416 AATTATCACC
* *
23616426 TTTAACGGATGGAGGAAAAAAATGACAAACTATTTTTTATCTG-AAA-GTTTTATTCATGACCAA
1 TTTAACGGATGGAGGAAAAAAATGACAAACTTTTTTTTATCTGAAAATATTTTATTCATG---AA
* * *
23616489 TTAGCATAAAACTATTTTTTTCTTGTTCAAGAAAAGACATTTAACCACAAGAGTTAAATGAGCTA
63 TTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAGACATTTAACCACGAGAGTTAAATGAGCTA
* * * * *
23616554 ATAAAGATAAGATTTCGATTCTCACCTTGATATAAAATAATTTAAAACTTGTGACCAGCATCTAC
128 ATAAAGATAAGATTTCAATTCTC-GCTTAATATAAAGTAATTTAAAACTTGTGACCAACATCTAC
* * *
23616619 ATTTTAATGGATGTATAGAATTTGCTTTAACGGATGGAGGAAA-AAATGACAAACTATTTCTTTA
192 ATATTAATGGATGTATAGAATTTGCTTTAACGGATGAAGGAAATAAATGACAAACTATTTTTTTA
23616683 TCTGAAAGTATTTTATTCATGGTCAATTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAAGAC
257 TCTGAAAGTATTTTATTCATGGTCAATTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAAG--
*
23616748 ATTTAACCACGAA-AGTTAAATGAGCTAATAAAGATAAGATTTCGATTCTCATATTGATATAGAC
320 ATTTAACCAC-AAGAGTTAAATGAACTAATAAAGATAAGATTTCGA---TCATA-TG--A-AGA-
*
23616812 TAATTTAAAACTTGTGACCAACGTTTACATCTTAATGGATGTATAAAATTTGTT
376 TAATTTAAAACTTGTGACCAACGTTTACATCTTAATGGATGTATAAAATTTGTG
* * **
23616866 TTTAATGGATGGA--ATAAAAAACGACAAACTATTTTTTTATCTGAATGTATTTTATTCATGGTC
1 TTTAACGGATGGAGGA-AAAAAATGACAAACT-TTTTTTTATCTGAAAATATTTTATTCAT-G--
* *
23616929 AATTAGCATAAAACTATTTTTATCTTGTTAAAAAAAAGTA-ATATAACCACGAGAGTTAAATGAG
61 AATTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAG-ACATTTAACCACGAGAGTTAAATGAG
*
23616993 CTAATAAAGATAAGATTTCAATTCTCGCATTAATATAGAGTAATTTAAAACTTGTGACCAACATC
125 CTAATAAAGATAAGATTTCAATTCTCGC-TTAATATAAAGTAATTTAAAACTTGTGACCAACATC
* * * * *
23617058 TACATCTTAATGGATATATAGAATTTACTTTAACAGATGAAGGAAATTAATGACAAACTATTTTT
189 TACATATTAATGGATGTATAGAATTTGCTTTAACGGATGAAGGAAATAAATGACAAACTATTTTT
* * *
23617123 TTATGTGAAAGTATTTTATTCATGGTCAATTAGCATAAAACAATTTTTTTTCTTGTTAAAAACAA
254 TTATCTGAAAGTATTTTATTCATGGTCAATTAGCATAAAACTA-TTTTTTTCTTGTTAAAAAAAA
* *
23617188 AGA-TAAACCACAAGAGTTAAATGAACTAATAAAAATAAGATTTCGAT-ATA-G-AG-TAATTTA
318 AGATTTAACCACAAGAGTTAAATGAACTAATAAAGATAAGATTTCGATCATATGAAGATAATTTA
* * * *
23617248 AAACTTGTGAGCAATGTTTTCATCTTAATGGATGTATAGAATTTG-G
383 AAACTTGTGACCAACGTTTACATCTTAATGGATGTATAAAATTTGTG
* * *
23617294 TTTAACAGATGGAGGAAAAAAATGACAAATTGTTTTTTTATTTGAAAATATTTTATTCATG-ATT
1 TTTAACGGATGGAGGAAAAAAATGACAAACT-TTTTTTTATCTGAAAATATTTTATTCATGAATT
** * * ** *
23617358 AGCATAAAACTATTTTTTTCTTGTTAAAAAAAAGACATTTAATTATGATAGTTAAAAAAACTAAT
65 AGCATAAAACTATTTTTTTCTTGTTAAAAAAAAGACATTTAACCACGAGAGTTAAATGAGCTAAT
* * *
23617423 AAAAATGAA-ATTTCAATTCTCGTCTTAATATAAAGTAATTTAAAACTTGTGTCCAACGTCTACA
130 AAAGAT-AAGATTTCAATTCTCG-CTTAATATAAAGTAATTTAAAACTTGTGACCAACATCTACA
* *
23617487 TATTAATGGATGTATAGAATTTGTTTTAACGGACGAAGGAAATAAATGACAAACTATTTTTTTAT
193 TATTAATGGATGTATAGAATTTGCTTTAACGGATGAAGGAAATAAATGACAAACTATTTTTTTAT
* * * * *
23617552 CTGAAGGTATATTATTCATGATCAATTAACATAAAACTATTTTTTTCTTGTTAAATAAAAAACAT
258 CTGAAAGTATTTTATTCATGGTCAATTAGCATAAAACTATTTTTTTCTTGTTAAA-AAAAAAGAT
* * * *
23617617 TTAACTACAAGAGTTAAATGAATTAATAAAGATAAAATTTCGATTTTCGCCTTAAT-ATAGAATA
322 TTAACCACAAGAGTTAAATGAACTAATAAAGATAAGATTTCGA---T---CAT-ATGA-AG-ATA
** * * * ** *
23617681 ATTTAAAACTTGAAACCAGA-GTCTATATCTTAATAGATGTATTGAATTTG-C
378 ATTTAAAACTTGTGACCA-ACGTTTACATCTTAATGGATGTATAAAATTTGTG
* * * *
23617732 TTTGACAGATGGAGAAAAAAAATGACAAATTATTTTTTTTATCTGAAAATAT
1 TTTAACGGATGGAGGAAAAAAATGACAAA--CTTTTTTTTATCTGAAAATAT
23617784 GACATTTTAT
Statistics
Matches: 794, Mismatches: 91, Indels: 67
0.83 0.10 0.07
Matches are distributed among these distances:
424 17 0.02
425 209 0.26
426 41 0.05
428 12 0.02
429 87 0.11
430 1 0.00
431 2 0.00
433 1 0.00
434 1 0.00
435 1 0.00
436 2 0.00
437 3 0.00
438 71 0.09
439 33 0.04
440 26 0.03
441 39 0.05
442 167 0.21
443 59 0.07
444 22 0.03
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (429 bp):
TTTAACGGATGGAGGAAAAAAATGACAAACTTTTTTTTATCTGAAAATATTTTATTCATGAATTA
GCATAAAACTATTTTTTTCTTGTTAAAAAAAAGACATTTAACCACGAGAGTTAAATGAGCTAATA
AAGATAAGATTTCAATTCTCGCTTAATATAAAGTAATTTAAAACTTGTGACCAACATCTACATAT
TAATGGATGTATAGAATTTGCTTTAACGGATGAAGGAAATAAATGACAAACTATTTTTTTATCTG
AAAGTATTTTATTCATGGTCAATTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAAGATTTAA
CCACAAGAGTTAAATGAACTAATAAAGATAAGATTTCGATCATATGAAGATAATTTAAAACTTGT
GACCAACGTTTACATCTTAATGGATGTATAAAATTTGTG
Found at i:23620743 original size:16 final size:16
Alignment explanation
Indices: 23620722--23620765 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
23620712 AGTTGGGTCA
23620722 ATTTTGGGTTTAGATC
1 ATTTTGGGTTTAGATC
* * *
23620738 ATTTTGAGTTCATATC
1 ATTTTGGGTTTAGATC
*
23620754 ATTTAGGGTTTA
1 ATTTTGGGTTTA
23620766 AATATCAGTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.23, C:0.07, G:0.20, T:0.50
Consensus pattern (16 bp):
ATTTTGGGTTTAGATC
Found at i:23625698 original size:25 final size:27
Alignment explanation
Indices: 23625670--23625719 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
23625660 ATTAAGCATT
*
23625670 AAACAATA-ACTTAA-AACACTCATAA
1 AAACAACATACTTAATAACACTCATAA
*
23625695 AAACAACATATTTAATAACACTCAT
1 AAACAACATACTTAATAACACTCAT
23625720 GCACATGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 5 0.24
27 9 0.43
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (27 bp):
AAACAACATACTTAATAACACTCATAA
Found at i:23627452 original size:18 final size:19
Alignment explanation
Indices: 23627424--23627470 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
23627414 CTTTCTTCTC
23627424 TCTCGTTTTC-ATTTTCACTT
1 TCTC-TTTTCAATTTTCA-TT
*
23627444 TCT-TTTTCAATTTTGATT
1 TCTCTTTTCAATTTTCATT
23627462 TCTCTTTTC
1 TCTCTTTTC
23627471 TCAAATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 10 0.42
19 11 0.46
20 3 0.12
ACGTcount: A:0.11, C:0.21, G:0.04, T:0.64
Consensus pattern (19 bp):
TCTCTTTTCAATTTTCATT
Found at i:23631355 original size:216 final size:212
Alignment explanation
Indices: 23630938--23631991 Score: 1133
Period size: 216 Copynumber: 4.9 Consensus size: 212
23630928 GAAACCCTAA
* *
23630938 ATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGGAAAATGGCTTAAAGGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATGG-TT-AAGGAATGGAT
* * * * * ** *
23631003 AGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCATAAAAGTTTGATTAGTTTGTAAG
64 AGTCTTGAATACTCTCAGGATC-AAAGTTATAAAAGAACTCTTAAATGTTTGACAAGTTTGAAAG
* * * * **
23631068 TTCGTCCTAGAACCAATAGAGAAACAATTCTCATGTTAATAAGTTTTTAATTTGAAGACTAAAAG
128 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-TAAAAG
* *
23631133 TTGTTTACAAAATGACAAAGT
192 TTGTTTACAAAATGAAAAACT
* * * *
23631154 TTTTAGACCAAATGATGCGA-TTCCCAAGCATGGAAAGTTCAGAAAATTGGATTAAGGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAA-TGG-TTAAGGAATGGAT
* * * * * *
23631218 TGTCTTCAATACTCTCAGGATTCGAAGTTACAAAAGAACTCTTAAATGTTTGGCAAGTTCGAAAG
64 AGTCTTGAATACTCTCAGGA-TCAAAGTTATAAAAGAACTCTTAAATGTTTGACAAGTTTGAAAG
23631283 TTCGTCCAAGAACCAAGAGAGAAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATGAAAA
128 TTCGTCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAT-AAAA
23631348 GTTGTTTACAAAATGAAAAACT
191 GTTGTTTACAAAATGAAAAACT
*
23631370 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATGGCTCAAAGGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATGG-T-TAAGGAATGGAT
* * * * * * *
23631435 AGTCTTGAATACTTTAAGGATCAAAAGTTATAACAGAACT-TGTAAAAGTTTGGCTAGTTTGTAA
64 AGTCTTGAATACTCTCAGGATC-AAAGTTATAAAAGAACTCT-TAAATGTTTGACAAGTTTGAAA
* * * * *
23631499 GTTCGTCCTAGAACGAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGACCAACA
127 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-TAAAA
* *
23631564 GTTGTTTACAAAGTTAAAAACT
191 GTTGTTTACAAAATGAAAAACT
*** *
23631586 ATTTAGAATGAATGATGCGATTTCCCGAGCATGGAATGTTCGG-AAA--GTT---G---GG-TCG
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATGGTTAAGGAATGGATAG
* * * * * * * * * *
23631641 TCTTTAATGCTCTCAGAAATCGAAGTTATAAAAGAACTCGTAAATATTTGATAAGTTCGGAAGAT
66 TCTTGAATACTCTCAG-GATCAAAGTTATAAAAGAACTCTTAAATGTTTGACAAGTTTGAAAGTT
*
23631706 CGTCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGTT
130 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-TAAAAGTT
*
23631771 GTTTACAAAATGACAAACT
194 GTTTACAAAATGAAAAACT
* * * *
23631790 ATTTAGACCAAATGATGCAATTTCCCGAGAATGGAATGTTCGGAAAATTAGTTGAAGGAATGGGT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAA-TGGTT-AAGGAATGGAT
* * * * * * *
23631855 CGTCTTTAATACTCTCAAGAACCAAAGTTATAAAAGAACTTTTAAATTTTTGAAAAGTTTGAAAG
64 AGTCTTGAATACTCTC-AGGATCAAAGTTATAAAAGAACTCTTAAATGTTTGACAAGTTTGAAAG
* ** * * * * * *
23631920 TTCATCCAAGAACTGAGAGAGAAAAAATTCTCATGTAAATAAATTTTAAATTCAAACACCAAAAG
128 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-TAAAAG
23631985 TTGTTTA
192 TTGTTTA
23631992 ATTTTTCGAG
Statistics
Matches: 706, Mismatches: 108, Indels: 48
0.82 0.13 0.06
Matches are distributed among these distances:
204 159 0.23
205 8 0.01
208 4 0.01
212 2 0.00
213 1 0.00
215 107 0.15
216 321 0.45
217 104 0.15
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.29
Consensus pattern (212 bp):
ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATGGTTAAGGAATGGATAG
TCTTGAATACTCTCAGGATCAAAGTTATAAAAGAACTCTTAAATGTTTGACAAGTTTGAAAGTTC
GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATAAAAGTTGT
TTACAAAATGAAAAACT
Found at i:23632123 original size:184 final size:183
Alignment explanation
Indices: 23631815--23632175 Score: 501
Period size: 184 Copynumber: 2.0 Consensus size: 183
23631805 TGCAATTTCC
* * * *
23631815 CGAGAATGGAATGTTCGGAAAATTAGTTGAAGGAATGGGTCGTCTTTAATACTCTCAAGAACCAA
1 CGAGAATGGAATGTTCGGAAAATTAGTTGAAAGAATGGATCGTCTTGAATACTATCAAGAACCAA
* * *
23631880 AGTTATAAAAGAACTTTTAAATTTTTGAAAAGTTTGAAAGTTCATCCAAGAACTGAGAGAGAAAA
66 AGTTATAAAAAAACTTGTAAATTTTTGAAAAGTTAGAAAGTTCATCCAAGAACTGAGAGAGAAAA
* **
23631945 AATTCTCATGTAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTAATTTTT
131 AATTCCCACATAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTAATTTTT
* * * *
23631998 CGAGAATGGAATGTTC-GAAACATTGGTTGAAAGAATGGATTGTCTTGAATACTATCAGGAACCG
1 CGAGAATGGAATGTTCGGAAA-ATTAGTTGAAAGAATGGATCGTCTTGAATACTATCAAGAACCA
*
23632062 AAGTTATAAAAAAAACTTGTAAATTTTTGAAAAGTTCAG-AAGTTCGTCCAAGAACTGAGAGAGA
65 AAGTTAT-AAAAAAACTTGTAAATTTTTGAAAAGTT-AGAAAGTTCATCCAAGAACTGAGAGAGA
* * * * *
23632126 AACAATTCCCACATAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTA
128 AAAAATTCCCACATAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTA
23632176 CAAAATGACA
Statistics
Matches: 155, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
182 4 0.03
183 58 0.37
184 92 0.59
185 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (183 bp):
CGAGAATGGAATGTTCGGAAAATTAGTTGAAAGAATGGATCGTCTTGAATACTATCAAGAACCAA
AGTTATAAAAAAACTTGTAAATTTTTGAAAAGTTAGAAAGTTCATCCAAGAACTGAGAGAGAAAA
AATTCCCACATAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTAATTTTT
Found at i:23632398 original size:216 final size:214
Alignment explanation
Indices: 23631991--23635603 Score: 2782
Period size: 216 Copynumber: 16.9 Consensus size: 214
23631981 AAAGTTGTTT
* * * *
23631991 AATTTTTCGAGAATGGAATGTTC-GAAACATTGGTTGAAAGAATGGATTGTCTTGAATACTATCA
1 AATTTTTCGAGCATGGAATGTTCAGAAA-A-TGGATCAAAGAATGGATTGTCTTGAATACT-TTA
* * * * ** *
23632055 GGAACCGAAGTTATAAAAAAAACT-TGT-AAATTTTTGAAAAGTTCAG-AAGTTCGTCCAAGAAC
63 AGAACCAAAGTTATAAAAAGAACTCT-TAAAAGTTTT-ACTAGTTC-GTAAGTTAGTCCAAGAAC
** * *
23632117 TGAGAGAGAAACAATTCCCACATAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAAT
125 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAAT
23632182 GACAAACTATTTAAACCAAATGATGC
190 GACAAACTATTTAAACC-AATGATGC
*
23632208 AATTTTTCGAGCATGGAATGTTCAGAAAATGGCTCAAATGAATGGATTGTCTTGAATACTTTAAC
1 AATTTTTCGAGCATGGAATGTTCAGAAAATGGATCAAA-GAATGGATTGTCTTGAATACTTTAA-
* ** *
23632273 GAACCAAAGTTGT-AAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCGGAGAACCAAA
64 GAACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCCAAGAACCAAG
* * * *
23632337 AGAGAAATAATTCTCACGTAAATAAATTTTTACTTCAAAGACCAAAATTTGTTTACAAAATGACG
129 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACA
*
23632402 AACTATTTAGACCAATGATGC
194 AACTATTTAAACCAATGATGC
* * * *
23632423 GA-TTTCCGGAGCATGGAATGTTCAAAAAATGGATCAAAGGAATGGATAGTCTTGAATACTTTAA
1 AATTTTTC-GAGCATGGAATGTTCAGAAAATGGATCAAA-GAATGGATTGTCTTGAATACTTTAA
* * * * * *
23632487 GAAACCAAAGTTATAAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAATTTGTCCTAGAACCAA
64 G-AACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCCAAGAACCAA
* * *
23632552 GAGAGAAACAATTCTCACGTAATTAAGTTTTTAAATT-GAAGACCAAAAATTGTTTACAAAATGA
128 GAGAGAAACAATTCTCACGTAAATAAGTTTTT-AATTCAAAGACCAAAATTTGTTTACAAAATGA
* * * * *
23632616 -TAA-GA-TT--CCCGA-GAATGG
192 CAAACTATTTAAACCAATG-ATGC
* * * * * *
23632634 AA-TGTTC-AG-A--AAATTGGTC-G--AA--G------GAATGGATCGTCTTGAATACTCTCAG
1 AATTTTTCGAGCATGGAA-TGTTCAGAAAATGGATCAAAGAATGGATTGTCTTGAATACT-TTAA
* * * * ** * * * *
23632683 GAATCAAAGTTA-CAAAAGAACTCTTAAATGCTTGGCAAGTTTGGAAGTTCA-TCCAAAAAACCA
64 GAACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTT-AGTCC-AAGAACCA
* * * * * *
23632746 TGAGAGAAACAATTCTCATGTAAATAAGTTTTTGATTCAAAGACCAAAAGTTATTTAAAAAATGA
127 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA
* *
23632811 TAAACTATTTAGACCAAATGATGC
192 CAAACTATTTAAACC-AATGATGC
* * * *
23632835 AATTTCTT-GAGCATGGTATGTTCA-AAAATTGCA-CAAAGGAATGCATCG-CATTGAATACTTT
1 AATTT-TTCGAGCATGGAATGTTCAGAAAA-TGGATCAAA-GAATGGATTGTC-TTGAATACTTT
* * * * * *
23632896 AAGGAACCAAAGTTAT-AGAAGAACTCGTAATAGTTTGACTAGTTCGTAAGTTCGTCCAATAACC
62 AA-GAACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCCAAGAACC
* * *
23632960 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGAGCAAAAGTTGTTTACAAAATG
126 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATG
*
23633025 ACAAACTATTTAGACCAAATGATGC
191 ACAAACTATTTAAACC-AATGATGC
* * * * * *
23633050 AA-TTTCCTGAGCATGGAATGTTC-GAAAAAGTTATCGAAGGAATGGATCGTCTTGAATTCTCTT
1 AATTTTTC-GAGCATGGAATGTTCAGAAAATG-GATC-AAAGAATGGATTGTCTTGAATACT-TT
* * * ** * * * * * * * ** *
23633113 AGGAACTAAAGTTAT-AAGAGAACTAGTACATGTTTGACAAGTTTGAAAGTTCGTCTGAGAACTA
62 AAGAACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCCAAGAACCA
* * *
23633177 AGAGAGAAACAATTCTTACATAAATAAG-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
127 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA
* *
23633241 TAAACTATTGT-GACCAAATGATGC
192 CAAACTATT-TAAACC-AATGATGC
* * * * * *
23633265 GA-TTTTCGGAGCATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTAA
1 AATTTTTC-GAGCATGGAATGTTCAG-AAAATGGATC-AAAGAATGGATTGTCTTGAATACTTTA
* * * * * *
23633328 AGAAACCAAAGTTAT-AAGAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCTAGAACCA
63 AG-AACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCCAAGAACCA
* * * *
23633392 AGAGAGAAATAATTCTCACGTAATTAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATGA
127 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA
* * * * *
23633457 CAAAGTTTTTAGACAAAATGATAC
192 CAAACTATTTAAAC-CAATGATGC
* * * * * *
23633481 -A-TTTCCTGAGCATGAAATGTTCAGAAAATTGG-TCGAAGTAATAGATCGTCTTGAATACTCTC
1 AATTTTTC-GAGCATGGAATGTTCAGAAAA-TGGATCAAAG-AATGGATTGTCTTGAATACT-TT
* * * * * ** * * * * *
23633543 AGGAACCGAGGTTA-CAAAAGAACTCTTAAATGTTTGGCAAGTTTGGAAGTTTGTCCAAAAACCA
62 AAGAACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCCAAGAACCA
* * * * * *
23633607 TGAGAGAAATAATTCTCATGTAAATAAGTTTTTGATTCAAAGACCAAAAGTTATTTACAAAATGA
127 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA
* *
23633672 TAAACTATTTAGACCAAATGATGC
192 CAAACTATTTAAACC-AATGATGC
* * * * ** * *
23633696 GA-TTTCCTGAGCATGGAATGTTC-GAAAAATTGCA-CAAAGGAAT-GTTTCACCTTGAACACCT
1 AATTTTTC-GAGCATGGAATGTTCAG-AAAA-TGGATCAAA-GAATGGATT-GTCTTGAATACTT
* * * * * *
23633757 TAAGGAA-TAGAAGTTAT-AAAAGAACTCGTAATAGTTTGACTAGTTTGTAAGTTCGTCCAAGAA
61 TAA-GAACCA-AAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCCAAGAA
* **
23633820 CCAAGAGATAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAGAAAAATTTGTTTACAAAA
124 CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAA
*
23633885 TGACAAACTATTTAGACCAAATGATGC
189 TGACAAACTATTTAAACC-AATGATGC
* * * * * * *
23633912 GA-TTTTCGGAGCATGAAATGTTCAGAAATTGGCTCGAAGGAATGGATAGTCTTGAATAATTTAA
1 AATTTTTC-GAGCATGGAATGTTCAGAAAATGGATC-AAAGAATGGATTGTCTTGAATACTTTAA
* * * * *
23633976 GGAACCAAAGTTATAAAAGGAA-TCGTAAAAGTTTGACTAGTAT-ATAAGTTCA-TCCTAGAACC
64 -GAACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGT-TCGTAAGTT-AGTCCAAGAACC
* * * * * *
23634038 AAGAGAGAAACAATTCTCTCGTAATTAATTTTTTAATTCGAATACCAAAAGTTGTTTACAAAATG
126 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATG
* *
23634103 ACAGA-T-TTTAGACCAAATGATGC
191 ACAAACTATTTAAACC-AATGATGC
* ** ** * * * * *
23634126 GA-TTCCCGAATATGGAAAGTTCAGAAAATTGGATTAAGGAATGGATTATCTTGAATACTCTAAG
1 AATTTTTCGAGCATGGAATGTTCAGAAAA-TGGATCAAAGAATGGATTGTCTTGAATACTTTAA-
* * ** * * * * * *
23634190 GATTCC-AAGTTA-GAAAAGAACTCTTAAATA-TTTGGCAAGTTTGAAAGTTCGTCAAAGAGCCA
64 GA-ACCAAAGTTATAAAAAGAACTCTTAAA-AGTTTTACTAGTTCGTAAGTTAGTCCAAGAACCA
* * * * *
23634252 AAATAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACAAAATGA
127 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA
*
23634317 CAAACTATTTAGACCAAATGATGC
192 CAAACTATTTAAACC-AATGATGC
* * * *
23634341 TATTTCTCGAGCATGGAATGTTC-GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAA
1 AATTTTTCGAGCATGGAATGTTCAG-AAAATGGATCAAA-GAATGGATTGTCTTGAATACTTTAA
* * * * * *
23634405 GGAACCAAAGTTAT-AAAAGAACTCGTAAAAGTTTGAGTAGTTTGTAAGTTCGTCCTAA-AGCCA
64 -GAACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCC-AAGAACCA
* * *
23634468 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATAA
127 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA
* * *
23634533 CAAAGT-TTCTAGACCAAATGATAC
192 CAAACTATT-TAAACC-AATGATGC
* *** * * * ** * *
23634557 GA-TCCCCGAGCATGGAATGCTCGGAAAAGTTG-TCGCTAGAATGGATCGTCTTGAATACTCTCA
1 AATTTTTCGAGCATGGAATGTTCAGAAAA-TGGATC-AAAGAATGGATTGTCTTGAATACT-TTA
* * * * * ** * *
23634620 GGAACCGAAGTTA-CAAAAGTACTCTT-AATGTTTGGCAAGTTCAG-AAGTTCGTCCAAGAACCA
63 AGAACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTC-GTAAGTTAGTCCAAGAACCA
* * * *
23634682 AGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTATTTACAAAATGA
127 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA
* * *
23634747 TAAACTATTTAGACCAAATTATGC
192 CAAACTATTTAAACC-AATGATGC
* * * * * * * * *
23634771 GA--TTTCCAACATGAAATGTTC-GAGAAATTGCTCAAAAAAATGGATCGCCTTGAATACTTTAA
1 AATTTTTCGAGCATGGAATGTTCAGA-AAATGGATC-AAAGAATGGATTGTCTTGAATACTTTAA
* * * * * *
23634833 GGAACCGAAGTTAT-AAAAGAACAT-GTAATAGTTTGACTAGTGCGTAAGTT-GATCCGAGAACC
64 -GAACCAAAGTTATAAAAAGAAC-TCTTAAAAGTTTTACTAGTTCGTAAGTTAG-TCCAAGAACC
*
23634895 AAGAGAGAAACAATTCTCACGTAAA-AATTTTTTTAATTCAAAGACCAAAA-TTGTTTACAAAAT
126 AAGAGAGAAACAATTCTCACGTAAATAA-GTTTTTAATTCAAAGACCAAAATTTGTTTACAAAAT
*
23634958 GACAAACTATTTAGACCAAATGATGC
190 GACAAACTATTTAAACC-AATGATGC
* * * * * *
23634984 GATTTCTCGAGCATGGAATGTTC-GAAAATGGCTGAAAGGAATGGATAGTCTTGAATACTTCAAG
1 AATTTTTCGAGCATGGAATGTTCAGAAAATGGATCAAA-GAATGGATTGTCTTGAATACTTTAA-
* * * *
23635048 GAACCAAAGTTAT-AAAAGAACTCGTAATAGTTTGACTAGTTCGTAAGTTCGTCCAAGAACC-AG
64 GAACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCCAAGAACCAAG
** * *
23635111 AGA-AAACAATTCTCACGTAAATAAGTTTTTAATTCGTAGACCAAAAGTTGCTTACAAAATGACA
129 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACA
* * * * * *
23635175 AAATTTTTGATCGAATGATAC
194 AACTATTTAAACCAATGATGC
* * * * * * * *
23635196 GA-TTCTCGAGCATGAAAAGTTC-GAAAAGTTGATCGAAGGAATGGATCGTCTTGAATACTCTCA
1 AATTTTTCGAGCATGGAATGTTCAGAAAA-TGGATC-AAAGAATGGATTGTCTTGAATACT-TTA
* * * * * ** * * * *
23635259 GGAATCGAAGTTA-CAAAAGAACTCTTAAATGTTTGGCTAGTAT-GGATGTTCGTCCAAAAACCA
63 AGAACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGT-TCGTAAGTTAGTCCAAGAACCA
*
23635322 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTACTTCAAAGACCAAAATTTGTTTACAAAATGA
127 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA
*
23635387 CAAACTATTTAGACCAAATGATGC
192 CAAACTATTTAAACC-AATGATGC
* *** * * *
23635411 GATTTCAAGAACATGGAATGTT-TGAAAAATGGATCAAAGGAATGGATAGTCTTGAATACTTTAA
1 AATTTTTCGAGCATGGAATGTTCAG-AAAATGGATCAAA-GAATGGATTGTCTTGAATACTTTAA
* * * * * *
23635475 GAAACCAAAGTTAT-AAAAGAACTCATAAAAGTTTGACTAGTTTGTAAGTTTGTCCTAGAATCAA
64 G-AACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCCAAGAACCAA
* *
23635539 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAACTCAAAGACCAAAAGTTGTTTTACAAAATGA
128 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTG-TTTACAAAATGA
23635604 AAAAGTTATA
Statistics
Matches: 2805, Mismatches: 454, Indels: 274
0.79 0.13 0.08
Matches are distributed among these distances:
194 35 0.01
195 89 0.03
196 5 0.00
197 1 0.00
198 2 0.00
200 2 0.00
201 6 0.00
202 3 0.00
203 4 0.00
204 3 0.00
205 4 0.00
206 3 0.00
207 6 0.00
208 1 0.00
209 2 0.00
210 1 0.00
211 33 0.01
212 132 0.05
213 284 0.10
214 365 0.13
215 674 0.24
216 1042 0.37
217 104 0.04
218 4 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (214 bp):
AATTTTTCGAGCATGGAATGTTCAGAAAATGGATCAAAGAATGGATTGTCTTGAATACTTTAAGA
ACCAAAGTTATAAAAAGAACTCTTAAAAGTTTTACTAGTTCGTAAGTTAGTCCAAGAACCAAGAG
AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAA
CTATTTAAACCAATGATGC
Found at i:23632776 original size:195 final size:195
Alignment explanation
Indices: 23632426--23632813 Score: 467
Period size: 195 Copynumber: 2.0 Consensus size: 195
23632416 ATGATGCGAT
* * *
23632426 TTCCGGAGCATGGAATGTTCAAAAAATGGATCAAAGGAATGGATAGTCTTGAATACTTTAAGAAA
1 TTCCCGAGAATGGAATGTTCAAAAAATGGATCAAAGGAATGGATAGTCTTGAATACTCTAAGAAA
* * * ** * *
23632491 CCAAAGTTATAAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAATTTGTCCTAGAACCAAGAGA
66 CCAAAGTTATAAAAAGAACTCGTAAAAGCTTGACAAGTTTGGAAATTCATCCAAAAACCAAGAGA
* * * *
23632556 GAAACAATTCTCACGTAATTAAGTTTTTAAATT-GAAGACCAAAAATTGTTTACAAAATGATAAG
131 GAAACAATTCTCACGTAAATAAGTTTTT-AATTCAAAGACCAAAAATTATTTAAAAAATGATAAG
23632620 A
195 A
* * * * *
23632621 TTCCCGAGAATGGAATGTTCAGAAAATTGG-TCGAAGGAATGGATCGTCTTGAATACTCTCAGGA
1 TTCCCGAGAATGGAATGTTCA-AAAAATGGATCAAAGGAATGGATAGTCTTGAATACTCTAAGAA
* * * * * * *
23632685 ATCAAAGTTA-CAAAAGAACTCTTAAATGCTTGGCAAGTTTGGAAGTTCATCCAAAAAACCATGA
65 ACCAAAGTTATAAAAAGAACTCGTAAAAGCTTGACAAGTTTGGAAATTCATCC-AAAAACCAAGA
* * *
23632749 GAGAAACAATTCTCATGTAAATAAGTTTTTGATTCAAAGACCAAAAGTTATTTAAAAAATGATAA
129 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTATTTAAAAAATGATAA
23632814 ACTATTTAGA
Statistics
Matches: 161, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
194 35 0.22
195 119 0.74
196 7 0.04
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (195 bp):
TTCCCGAGAATGGAATGTTCAAAAAATGGATCAAAGGAATGGATAGTCTTGAATACTCTAAGAAA
CCAAAGTTATAAAAAGAACTCGTAAAAGCTTGACAAGTTTGGAAATTCATCCAAAAACCAAGAGA
GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTATTTAAAAAATGATAAGA
Found at i:23633413 original size:431 final size:431
Alignment explanation
Indices: 23632634--23635682 Score: 3445
Period size: 431 Copynumber: 7.1 Consensus size: 431
23632624 CCGAGAATGG
* * * *
23632634 AATGTTC-AGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCAAAGTTACAA
1 AATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTCTTAGGAACCAAAGTTATAA
* * * * * *
23632698 AAGAACTCTTAAATGCTTGGCAAGTTTGGAAGTTCATCCAAAAAACCATGAGAGAAACAATTCTC
65 AAGAACTCGTAAATGTTTGACTAGTTTGGAAGTTCGTCC-AAAAACCAAGAGAGAAACAATTCTC
* * * * *
23632763 ATGTAAATAAGTTTTTGATTCAAAGACCAAAAGTTATTTAAAAAATGATAAACTATTTAGACCAA
129 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * *
23632828 ATGATGCAATTTCTTGAGCATGGTATGTTC-AAAAATTGCACAAAGGAATGCATCG-CATTGAAT
194 ATGATGCGATTTC-CGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTC-TTGAAT
* * * * * *
23632891 ACTTTAAGGAACCAAAGTTATAGAAGAACTCGTAATAGTTTGACTAGTTCGTAAGTTCGTCCAAT
257 ACTTAAAGAAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCAAG
* *
23632956 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGAGCAAAAGTTGTTTACAA
322 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* *
23633021 AATGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCATGG
387 AATGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGA
* * *
23633066 AATGTTCGAAAAAGTT-ATCGAAGGAATGGATCGTCTTGAATTCTCTTAGGAACTAAAGTTATAA
1 AATGTTCGAAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATACTCTTAGGAACCAAAGTTATAA
* * * * * ** * * *
23633130 GAGAACTAGTACATGTTTGACAAGTTTGAAAGTTCGTCTGAGAACTAAGAGAGAAACAATTCTTA
65 AAGAACTCGTAAATGTTTGACTAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
* *
23633195 CATAAATAAG-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTGT-GACCAA
130 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT-TAGACCAA
* *
23633258 ATGATGCGATTTTCGGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
194 ATGATGCGA-TTTCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATA
* *
23633323 CTTAAAGAAACCAAAGTTATAAGAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCTAGA
258 CTTAAAGAAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCAAGA
* * *
23633388 ACCAAGAGAGAAATAATTCTCACGTAATTAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAA
323 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * *
23633453 ATGACAAAGTTTTTAGACAAAATGATAC-ATTTCCTGAGCATGA
388 ATGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGA
* * * * * * *
23633496 AATGTTC-AGAAAATTGGTCGAAGTAATAGATCGTCTTGAATACTCTCAGGAACCGAGGTTACAA
1 AATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTCTTAGGAACCAAAGTTATAA
* * * * * *
23633560 AAGAACTCTTAAATGTTTGGCAAGTTTGGAAGTTTGTCCAAAAACCATGAGAGAAATAATTCTCA
65 AAGAACTCGTAAATGTTTGACTAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
* * * *
23633625 TGTAAATAAGTTTTTGATTCAAAGACCAAAAGTTATTTACAAAATGATAAACTATTTAGACCAAA
130 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* ** ** *
23633690 TGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCACAAAGGAATGTTTCACCTTGAACAC
195 TGATGCGATTTCC-GAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATA-
* * *
23633755 CTTAAGGAATA--GAAGTTATAAAAGAACTCGTAATAGTTTGACTAGTTTGTAAGTTCGTCCAAG
258 CTTAAAGAA-ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCAAG
* ** *
23633818 AACCAAGAGATAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAGAAAAATTTGTTTACAA
322 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* *
23633883 AATGACAAACTATTTAGACCAAATGATGCGATTTTCGGAGCATGA
387 AATGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGA
* * *
23633928 AATGTTC-AGAAATTGGCTCGAAGGAATGGATAGTCTTGAATAAT-TTAAGGAACCAAAGTTATA
1 AATGTTCGAAAAATT-GCTCGAAGGAATGGATCGTCTTGAATACTCTT-AGGAACCAAAGTTATA
* * ** * * *
23633991 AAAGGAA-TCGTAAAAGTTTGACTAGTATATAAGTTCATCCTAGAACCAAGAGAGAAACAATTCT
64 AAA-GAACTCGTAAATGTTTGACTAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCT
* * * * * *
23634055 CTCGTAATTAATTTTTTAATTCGAATACCAAAAGTTGTTTACAAAATGACAGA-T-TTTAGACCA
128 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* ** * * * **
23634118 AATGATGCGATTCCCGAATATGGAAAGTTC-AGAAAATTGGAT-TAAGGAATGGATTATCTTGAA
193 AATGATGCGATTTCCGAGCATGGAATGTTCGA-AAAATT-GCTCAAAGGAATGGATCGTCTTGAA
* ** * * * * * *
23634181 TACTCTAAGGATTCC-AAGTTAGAAAAGAACTCTTAAATA-TTTGGCAAGTTTGAAAGTTCGTCA
256 TACT-TAAAGAAACCAAAGTTATAAAAGAACTCGTAAA-AGTTTGACTAGTTTGTAAGTTCGTCC
* * * * *
23634244 AAGAGCCAAAATAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTA
319 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* *
23634309 CAAAATGACAAACTATTTAGACCAAATGATGCTATTT-CTCGAGCATGG
384 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCT-GAGCATGA
* * *
23634357 AATGTTCGAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAA
1 AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTCTT-AGGAACCAAAGTTATAA
* * * * *
23634421 AAGAACTCGTAAAAGTTTGAGTAGTTTGTAAGTTCGTCCTAAAGCCAAGAGAGAAACAATTCTCA
65 AAGAACTCGTAAATGTTTGACTAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
* * *
23634486 CGTAAATAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATAACAAAGT-TTCTAGACCAA
130 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT-TAGACCAA
* ** * * **
23634550 ATGATACGATCCCCGAGCATGGAATGCTCGGAAAAGTTG-TCGCTA-GAATGGATCGTCTTGAAT
194 ATGATGCGATTTCCGAGCATGGAATGTTC-GAAAAATTGCTC-AAAGGAATGGATCGTCTTGAAT
* * * * * * * * * *
23634613 ACTCT-CAGGAACCGAAGTTACAAAAGTACTC-TTAATGTTTGGCAAGTTCAG-AAGTTCGTCCA
257 ACT-TAAAGAAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTT-TGTAAGTTCGTCCA
* * *
23634675 AGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTATTTAC
320 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * *
23634740 AAAATGATAAACTATTTAGACCAAATTATGCGATTTCC--AACATGA
385 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGA
* * ** * *
23634785 AATGTTCGAGAAATTGCTCAAAAAAATGGATCGCCTTGAATACT-TTAAGGAACCGAAGTTATAA
1 AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTCTT-AGGAACCAAAGTTATAA
** * * *
23634849 AAGAACAT-GT-AATAGTTTGACTAGTGCGTAAGTT-GATCCGAGAACCAAGAGAGAAACAATTC
65 AAGAAC-TCGTAAAT-GTTTGACTAGTTTGGAAGTTCG-TCCAAAAACCAAGAGAGAAACAATTC
*
23634911 TCACGTAAA-AATTTTTTTAATTCAAAGACCAAAA-TTGTTTACAAAATGACAAACTATTTAGAC
127 TCACGTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * *
23634974 CAAATGATGCGATTTCTCGAGCATGGAATGTTCG-AAAATGGCTGAAAGGAATGGATAGTCTTGA
191 CAAATGATGCGATTTC-CGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGA
* * * *
23635038 ATACTTCAAGGAACCAAAGTTATAAAAGAACTCGTAATAGTTTGACTAGTTCGTAAGTTCGTCCA
255 ATACTTAAAGAAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCA
** *
23635103 AGAACC-AGAGA-AAACAATTCTCACGTAAATAAGTTTTTAATTCGTAGACCAAAAGTTGCTTAC
320 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * * * *
23635166 AAAATGACAAAAT-TTTTGATCGAATGATACGA-TT-CTCGAGCATGA
385 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCT-GAGCATGA
* * * * * * *
23635211 AAAGTTCGAAAAGTTGATCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTACAAA
1 AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTCTTAGGAACCAAAGTTATAAA
* * * *
23635276 AGAACTCTTAAATGTTTGGCTAGTATGGATGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCAC
66 AGAACTCGTAAATGTTTGACTAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCAC
* *
23635341 GTAAATAAGTTTTTACTTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAAT
131 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * * *
23635406 GATGCGATTTCAAGAACATGGAATGTTTGAAAAATGGATCAAAGGAATGGATAGTCTTGAATACT
196 GATGCGATTTC-CGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACT
* * * * *
23635471 TTAAGAAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAAGTTTGTCCTAGAAT
260 TAAAGAAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCAAGAAC
*
23635536 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAACTCAAAGACCAAAAGTTGTTTTACAAAA
325 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG-TTTACAAAA
* * * *
23635601 TGAAAAAGT-TATAAGACTAAATGATGCGA-TT-CTCGAGCATTGA
389 TGACAAACTAT-TTAGACCAAATGATGCGATTTCCT-GAGCA-TGA
* * *
23635644 AAT-TTCGGAAAATTGGTC-AGAGGAATGGATCATCTTGAA
1 AATGTTCGAAAAATTGCTCGA-AGGAATGGATCGTCTTGAA
23635683 AGTTCGGAAG
Statistics
Matches: 2235, Mismatches: 319, Indels: 126
0.83 0.12 0.05
Matches are distributed among these distances:
423 1 0.00
424 2 0.00
425 15 0.01
426 197 0.09
427 158 0.07
428 283 0.13
429 343 0.15
430 395 0.18
431 530 0.24
432 298 0.13
433 13 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (431 bp):
AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTCTTAGGAACCAAAGTTATAAA
AGAACTCGTAAATGTTTGACTAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCAC
GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
GATGCGATTTCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTT
AAAGAAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCAAGAACC
AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
ACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGA
Found at i:23633463 original size:20 final size:20
Alignment explanation
Indices: 23633438--23633477 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
23633428 TCGAAGACCA
23633438 AAAGTTGTTT-ACAAAATGAC
1 AAAGTT-TTTAACAAAATGAC
23633458 AAAGTTTTTAGACAAAATGA
1 AAAGTTTTTA-ACAAAATGA
23633478 TACATTTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.17
20 6 0.33
21 9 0.50
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (20 bp):
AAAGTTTTTAACAAAATGAC
Found at i:23635670 original size:216 final size:214
Alignment explanation
Indices: 23632610--23635682 Score: 3323
Period size: 216 Copynumber: 14.3 Consensus size: 214
23632600 ATTGTTTACA
** * *
23632610 AAATGATAAGATTCCCGAGAATGGAATGTTCAGAAAATTGGTC-GAAGGAATGGATCGTCTTGAA
1 AAATGATGCGATTCTCGAGCATGGAATGTTC-GAAAATTGGTCAG-AGGAATGGATCGTCTTGAA
* * * * * * * * * * *
23632674 TACTCTCAGGAATCAAAGTTACAAAAGAACTCTTAAATGCTTGGCAAGTTTGGAAGTTCATCCAA
64 TACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCC-A
* * * * * *
23632739 AAAACCATGAGAGAAACAATTCTCATGTAAATAAGTTTTTGATTCAAAGACCAAAAGTTATTTAA
128 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
*
23632804 AAAATGATAAACTATTTAGACC
193 AAAATGACAAACTATTTAGACC
* * * * ** * *
23632826 AAATGATGCAATTTCTTGAGCATGGTATGTTCAAAAATTGCACAAAGGAATGCATCG-CATTGAA
1 AAATGATGCGA-TTCTCGAGCATGGAATGTTCGAAAATTGGTCAGAGGAATGGATCGTC-TTGAA
* * *
23632890 TACTTTAAGGAACCAAAGTTATAGAAGAACTCGTAATAGTTTGACTAGTTCGTAAGTTCGTCCAA
64 TACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCAA
* * *
23632955 TAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGAGCAAAAGTTGTTTACA
129 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
23633020 AAATGACAAACTATTTAGACC
194 AAATGACAAACTATTTAGACC
* *
23633041 AAATGATGCAATT-TCCTGAGCATGGAATGTTCGAAAAAGTT-ATC-GAAGGAATGGATCGTCTT
1 AAATGATGCGATTCT-C-GAGCATGGAATGTTCG-AAAA-TTGGTCAG-AGGAATGGATCGTCTT
* * * * * * * *
23633103 GAATTCTCTT-AGGAACTAAAGTTATAAGAGAACTAGTACATGTTTGACAAGTTTGAAAGTTCGT
61 GAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGT
** * * *
23633167 CTGAGAACTAAGAGAGAAACAATTCTTACATAAATAAG-TTTTAATTCAAAGACCAAAAGTTGTT
125 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
*
23633231 TACAAAATGATAAACTATTGT-GACC
190 TACAAAATGACAAACTATT-TAGACC
* *
23633256 AAATGATGCGATTTTCGGAGCATGGAATGTTCGAAAAATTGCTC-GAAGGAATGGATCGTCTTGA
1 AAATGATGCGATTCTC-GAGCATGGAATGTTCG-AAAATTGGTCAG-AGGAATGGATCGTCTTGA
* * * *
23633320 ATACTTAAAGAAACCAAAGTTATAAGAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCT
63 ATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCA
* * *
23633385 AGAACCAAGAGAGAAATAATTCTCACGTAATTAAGTTTTTAATTCGAAGACCAAAAGTTGTTTAC
128 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * *
23633450 AAAATGACAAAGTTTTTAGACA
193 AAAATGACAAACTATTTAGACC
* * * *
23633472 AAATGATAC-ATT-TCCTGAGCATGAAATGTTCAGAAAATTGGTC-GAAGTAATAGATCGTCTTG
1 AAATGATGCGATTCT-C-GAGCATGGAATGTTC-GAAAATTGGTCAG-AGGAATGGATCGTCTTG
* * * * * * * * * * *
23633534 AATACTCTCAGGAACCGAGGTTACAAAAGAACTCTTAAATGTTTGGCAAGTTTGGAAGTTTGTCC
62 AATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCC
* * * * * *
23633599 AAAAACCATGAGAGAAATAATTCTCATGTAAATAAGTTTTTGATTCAAAGACCAAAAGTTATTTA
127 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
*
23633664 CAAAATGATAAACTATTTAGACC
192 CAAAATGACAAACTATTTAGACC
** * ** **
23633687 AAATGATGCGATT-TCCTGAGCATGGAATGTTCGAAAAATTGCACAAAGGAATGTTTCACCTTGA
1 AAATGATGCGATTCT-C-GAGCATGGAATGTTCG-AAAATTGGTCAGAGGAATGGATCGTCTTGA
* * * *
23633751 ACACCTTAAGGAA-TAGAAGTTATAAAAGAACTCGTAATAGTTTGACTAGTTTGTAAGTTCGTCC
63 ATACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCC
* ** *
23633815 AAGAACCAAGAGATAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAGAAAAATTTGTTTA
127 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
23633880 CAAAATGACAAACTATTTAGACC
192 CAAAATGACAAACTATTTAGACC
* * *
23633903 AAATGATGCGATTTTCGGAGCATGAAATGTTC-AGAAATTGGCTC-GAAGGAATGGATAGTCTTG
1 AAATGATGCGATTCTC-GAGCATGGAATGTTCGA-AAATTGG-TCAG-AGGAATGGATCGTCTTG
* * * *
23633966 AATAATTTAAGGAACCAAAGTTATAAAAGGAA-TCGTAAAAGTTTGACTAGTATATAAGTTCATC
62 AATACTTTAAGGAACCAAAGTTATAAAA-GAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTC
* * * * * *
23634030 CTAGAACCAAGAGAGAAACAATTCTCTCGTAATTAATTTTTTAATTCGAATACCAAAAGTTGTTT
126 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
*
23634095 ACAAAATGACAGA-T-TTTAGACC
191 ACAAAATGACAAACTATTTAGACC
* ** * * **
23634117 AAATGATGCGATTCCCGAATATGGAAAGTTCAGAAAATTGGATTA-AGGAATGGATTATCTTGAA
1 AAATGATGCGATTCTCGAGCATGGAATGTTC-GAAAATTGG-TCAGAGGAATGGATCGTCTTGAA
* * * * * * * *
23634181 TACTCTAAGGATTCC-AAGTTAGAAAAGAACTCTTAAATA-TTTGGCAAGTTTGAAAGTTCGTCA
64 TACTTTAAGGA-ACCAAAGTTATAAAAGAACTCGTAAA-AGTTTGACTAGTTTGTAAGTTCGTCC
* * * * *
23634244 AAGAGCCAAAATAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTA
127 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
23634309 CAAAATGACAAACTATTTAGACC
192 CAAAATGACAAACTATTTAGACC
* * * *
23634332 AAATGATGCTATTTCTCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATAGTCTTGAA
1 AAATGATGCGA-TTCTCGAGCATGGAATGTTCGAAAATTGG-TCAGAGGAATGGATCGTCTTGAA
*
23634397 TACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAGTAGTTTGTAAGTTCGTCCTA
64 TACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCC-A
* *
23634462 A-AGCCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAAGTTGTTTAC
128 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* *
23634526 AAAATAACAAAGT-TTCTAGACC
193 AAAATGACAAACTATT-TAGACC
* * * *
23634548 AAATGATACGATCCCCGAGCATGGAATGCTCGGAAAAGTT-GTC-GCTA-GAATGGATCGTCTTG
1 AAATGATGCGATTCTCGAGCATGGAATGTTC-GAAAA-TTGGTCAG--AGGAATGGATCGTCTTG
* * * * * * * * * *
23634610 AATACTCTCAGGAACCGAAGTTACAAAAGTACTC-TTAATGTTTGGCAAGTTCAG-AAGTTCGTC
62 AATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTT-TGTAAGTTCGTC
* * *
23634673 CAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTATTT
126 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
*
23634738 ACAAAATGATAAACTATTTAGACC
191 ACAAAATGACAAACTATTTAGACC
* * * * * * ** *
23634762 AAATTATGCGATT-TCCAACATGAAATGTTCGAGAAATTGCTCAAAAAAATGGATCGCCTTGAAT
1 AAATGATGCGATTCTCGAGCATGGAATGTTCGA-AAATTGGTCAGAGGAATGGATCGTCTTGAAT
* * ** *
23634826 ACTTTAAGGAACCGAAGTTATAAAAGAACAT-GTAATAGTTTGACTAGTGCGTAAGTT-GATCCG
65 ACTTTAAGGAACCAAAGTTATAAAAGAAC-TCGTAAAAGTTTGACTAGTTTGTAAGTTCG-TCCA
*
23634889 AGAACCAAGAGAGAAACAATTCTCACGTAAA-AATTTTTTTAATTCAAAGACCAAAA-TTGTTTA
128 AGAACCAAGAGAGAAACAATTCTCACGTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTA
23634952 CAAAATGACAAACTATTTAGACC
192 CAAAATGACAAACTATTTAGACC
* * *
23634975 AAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAA-TGGCTGAAAGGAATGGATAGTCTTGAA
1 AAATGATGCGA-TTCTCGAGCATGGAATGTTCGAAAATTGG-TCAGAGGAATGGATCGTCTTGAA
* * *
23635039 TACTTCAAGGAACCAAAGTTATAAAAGAACTCGTAATAGTTTGACTAGTTCGTAAGTTCGTCCAA
64 TACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCAA
** *
23635104 GAACC-AGAGA-AAACAATTCTCACGTAAATAAGTTTTTAATTCGTAGACCAAAAGTTGCTTACA
129 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * *
23635167 AAATGACAAAAT-TTTTGATC
194 AAATGACAAACTATTTAGACC
* * * * *
23635187 GAATGATACGATTCTCGAGCATGAAAAGTTCGAAAAGTTGATC-GAAGGAATGGATCGTCTTGAA
1 AAATGATGCGATTCTCGAGCATGGAATGTTCGAAAA-TTGGTCAG-AGGAATGGATCGTCTTGAA
* * * * * * * * * * *
23635251 TACTCTCAGGAATCGAAGTTACAAAAGAACTCTTAAATGTTTGGCTAGTATGGATGTTCGTCCAA
64 TACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCAA
* * *
23635316 AAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTACTTCAAAGACCAAAATTTGTTTACA
129 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
23635381 AAATGACAAACTATTTAGACC
194 AAATGACAAACTATTTAGACC
* * * * *
23635402 AAATGATGCGATT-TCAAGAACATGGAATGTTTGAAAAATGGATCAAAGGAATGGATAGTCTTGA
1 AAATGATGCGATTCTC--GAGCATGGAATGTTCGAAAATTGG-TCAGAGGAATGGATCGTCTTGA
* * * *
23635466 ATACTTTAAGAAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAAGTTTGTCCT
63 ATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCA
* *
23635531 AGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAACTCAAAGACCAAAAGTTGTTTTA
128 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG-TTTA
* * * *
23635596 CAAAATGAAAAAGT-TATAAGACT
192 CAAAATGACAAACTAT-TTAGACC
* *
23635619 AAATGATGCGATTCTCGAGCATTGAAAT-TTCGGAAAATTGGTCAGAGGAATGGATCATCTTGAA
1 AAATGATGCGATTCTCGAGCA-TGGAATGTTC-GAAAATTGGTCAGAGGAATGGATCGTCTTGAA
23635683 AGTTCGGAAG
Statistics
Matches: 2386, Mismatches: 391, Indels: 160
0.81 0.13 0.05
Matches are distributed among these distances:
211 23 0.01
212 134 0.06
213 274 0.11
214 364 0.15
215 612 0.26
216 901 0.38
217 76 0.03
218 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (214 bp):
AAATGATGCGATTCTCGAGCATGGAATGTTCGAAAATTGGTCAGAGGAATGGATCGTCTTGAATA
CTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCAAGA
ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
ATGACAAACTATTTAGACC
Found at i:23637225 original size:216 final size:216
Alignment explanation
Indices: 23635690--23641489 Score: 6138
Period size: 215 Copynumber: 27.0 Consensus size: 216
23635680 GAAAGTTCGG
*
23635690 AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * *
23635755 AAGTTGTTTACAAAATGACAAACTACTTAAACCAAATGATGCGATTT-CC-AGCCTGGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * * * *
23635818 GAGAAATTGCTCAAAGGAATGGATCGCCTTGAATATTTTAACGAACCGAAGTTATAAAAGCACTC
131 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * *
23635883 -TAATAGTTTGACTAGTTCGT
196 ATAAAAGTTTGACAAGTTTGT
* * * *
23635903 ATGTTCATCTAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* *
23635968 AATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGTATGGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * *
23636033 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTCAAAGATCCAAAGTTATAAAAGAACTC
131 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * ** *
23636098 TTAAATGTTTTGGCAAGTACGG
196 ATAAAAG-TTTGACAAGTTTGT
* ** * * * *
23636120 ATGTTCGTGTAAAAACCATGAAAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
** * * * * *
23636185 AAGTAATTTAGAAAATGATAAACTATTTAGCCCAAATAATGCGATTTCCCGAGCATGGAGTGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * * *
23636250 GAAAAATTGCACAAAGGAATGGTTCA-CCTTTAATAGTTTAAGGAACCGAAGTTATAAAAGAACT
131 GAAAAATGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
*
23636314 CATAAAGGTTTGACAAGTTTAG-
195 CATAAAAGTTTGACAAGTTT-GT
* * * * *
23636336 AAGTTCGTCCAAGACCCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTTAATTAAAAGACAAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * *
23636399 AAGTT-TATTACAAAATGAAAAACTATTTAAACCAAATGATGCGTTTTCCCGAGCATGGAATGTT
66 AAGTTGT-TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * *
23636463 CAAAAAATTGG-TCGAAGGAGTGG-TAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
130 CGAAAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* *
23636526 TCATAAAAGTTTGACAAGTTCGA
194 TCATAAAAGTTTGACAAGTTTGT
* * **
23636549 AAGTTCGTCCAAGAACCCAGAGAGAAACAATTCTCATGTAAATAA--TTTTAATTCAAAGATGAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
23636612 AAGTTGTTTACAAAATGAAAAACTATTTAGAACAAATGTTGCGATTTCCTGAGCATGGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* *
23636677 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTCAAGGAACCAAAGTTATAAAAAAAACT
131 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTAT-AAAAGAACT
* * * *
23636742 CATAAAAATATGACTAGTTCGT
195 CATAAAAGTTTGACAAGTTTGT
* * *
23636764 AAGTTTGTCCAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * * * *
23636829 AAGTTGTTCACAAAATGACAAAGTTTTTAGACGAAATGATGTGA-TTCCCGAGCATTGAAAGTTT
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * * * ** * *
23636893 GAAAAATTGATCGAATGAAAGGATCGTCTTGAATACTTTCAGGATTCGAAGTTACAAAAGAACTC
131 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * *
23636958 TTAAATGTTTGGCAAGTTTGG
196 ATAAAAGTTTGACAAGTTTGT
* * * *
23636979 AAGTTCGTCCAAGAACCAATAGAGAAACAATTGTCACGTAAATAAGTTTTTAATTTAAAGACGAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * *
23637044 AAGTTGTTTACAAAATGTCAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATAGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* *
23637109 AAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTC
131 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* *
23637174 GTAAAAGTTTGACTAGTTTGT
196 ATAAAAGTTTGACAAGTTTGT
*
23637195 AAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCA
1 AAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *** * *
23637259 AAAGTCGTTTACAAAATTAAAAACTATTTAGAATGAATAATGTGATTTCCCGAGCATGGAATGTT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * * * * *
23637324 CTGAAAATTGG-TCGAAGGAATGGATTGTCTTTAATGCTCTCAA-AAACCGAAGTTATAAAAG-A
130 C-GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAA
* * * * *
23637386 CTTATAAATGTTGGACAAGTTCGA
193 CTCATAAAAGTTTGACAAGTTTGT
* *
23637410 AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
23637475 AAGTTGTTTACAAAATGACAAACTACTTAAACCAAATGATGCGATTTCCCAAGTATAGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * *
23637540 GAAAAATGGCTCAAAGGAATGGATTGTCTTGAATACTTCAAGGATCCAAAGTTATAAAAGGACAC
131 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * *
23637605 GTAATAGTTTGACTAGTTCGT
196 ATAAAAGTTTGACAAGTTTGT
* * *
23637626 ATGTTCGT-CATATAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
1 AAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * *
23637690 AAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGTATGGAATGTT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * *
23637755 CGGAAAATGACTCAAAGGAATGGATAGTCTTGAATACTTCAAGGAACCAAAGGTATAAAAGAGCT
130 CGAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
* **
23637820 CA-AAAAGTTTGACTAGTGCGT
195 CATAAAAGTTTGACAAGTTTGT
* * *
23637841 ATGTTCGTCCTAGAACC-A-AGAGAAACAATTCTTA-GATAAATAAGTTTTTAATT-AGAAGACC
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG-TAAATAAGTTTTTAATTCA-AAGACC
* * * ** *
23637902 AAAATTTGTTTACAAAATGAC--AGTTTTTAGA-CAGAATGATATGA-TTCCCGAGCATGGAAAG
64 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCA-AATGATGCGATTTCCCGAGCATGGAATG
* * * * *
23637963 TCCGAAAAATTGG-TCGAAGGAATGGATCGTCTTGAATACTCTCAA-GAACCAAAGTTACAAAAG
128 TTCGAAAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAG
* * * ***
23638026 AACTCTTAAATGTTTGGCAAG-TACA
191 AACTCATAAAAGTTTGACAAGTTTGT
* * * * ** *
23638051 AATGTTGGTCCAAAAACCATGA-AAAAATCAATTCTCACGTAAATAA-AATTTAATTCAGAGACC
1 AA-GTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
** * * * * * * *
23638114 AAAAGTAATTTAGAAAATGATAAAATATTTAG-CTAAAATAATGCGATTCCCCGAGCATGGAGTG
64 AAAAGTTGTTTACAAAATGACAAACTATTTAGAC-CAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * * **
23638178 TTCGAAAAATTGCACAAAGGAATGGTTCA-CCTTTAATAGTTTAAGGAACTGAAGTTATAAAAGA
128 TTCGAAAAATGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
23638242 ACTCATAAAAGTTTGACAAGTTTAG-
192 ACTCATAAAAGTTTGACAAGTTT-GT
* * * * *
23638267 AAGTTCGTCCAAGACCCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTTAATTAAAAGACGAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
*
23638330 AAGTT-TATTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
66 AAGTTGT-TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * ** ** * ** *
23638394 TGGAAAATTGCTTGAAGGAATTAATCGTGATGAATACTTTAAGGAACTGAAA-TTATAAAAGAAC
130 CGAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAAC-CAAAGTTATAAAAGAAC
* * *
23638458 TCATAAAAGCTTGACAAGTTCGG
194 TCATAAAAGTTTGACAAGTTTGT
* * *
23638481 AAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACAAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* ** *** *
23638546 AAGTTGTTTA-ATAAATGATAAACTATTTAGACCAAATGATTAGATTTCTTAAGCATTGAATGTT
66 AAGTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
*
23638610 CGAAAAATTGG-TCGAAGGAAT-GATAGTCTTGAATACTTTAAGGAACCAAAGTTAT-AAAGAAC
130 CGAAAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
*
23638672 TCATAAAATTTTGACAAGTTTAG-
194 TCATAAAAGTTTGACAAGTTT-GT
* * *
23638695 AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAT-AG-TTTTAATTCAAAGACGAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * ** * * **
23638758 AAGTTGATTAAAAAATGAAAAACTATTTAGAAAAAATGTTGTGATTTCCTAAGCATGGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * *
23638823 GGAAAATGGCTCAAAGGAATGGATAGTCTTGACTACTTCAAGGAACCAAAGTTATAAAAAAAACT
131 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTAT-AAAAGAACT
* *
23638888 CGTAAAAGTTTGACTAGTTTGT
195 CATAAAAGTTTGACAAGTTTGT
* * * * *
23638910 TAGTTTGTCCTAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * *
23638975 AAGTTGTTTACAAAAT-ACAAAGTTTTTAGACGAAATGATGTGA-TTCCCGAGCATTGAAAGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * * * * * *
23639038 GAAAAATTGG-TCGAACGAATGGATCGTCTTGAAAAGTCTCAA-GATCTAATGTTACAAAAGAAC
131 GAAAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAAC
* * * *
23639101 TCTTAATAGTATGACTAGTTTGT
194 TCATAAAAGTTTGACAAGTTTGT
** * *
23639124 AAGTTCGTCGGAGAAGCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
*** * * * * * *
23639189 TTTTTTTTTTATAAAATGACAAATTATTTAGACCAAATGATGCAATTTCCAGAGCATGGAATGCT
66 -AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * *
23639254 GGGAAAATGGCTCAAAGGAATGGATAGCCTTGAATACTTTAAGGAACCAAAGTTATAAATGAACT
130 CGAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
** *
23639319 TGTAAAAGTTTGACTAGTTTGT
195 CATAAAAGTTTGACAAGTTTGT
* * **
23639341 AAGTTCGTCCTATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTGAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * *
23639406 AAGTTGTTTACAAAAT-A-AAATTTTTTTTAGACAAAATGATGTGA-TTCCCGAGCATTGAAAGT
66 AAGTTGTTTACAAAATGACAAA--CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
** * * * ** * * *
23639468 TCGAAAAATTGG-TTGAACGAATGGATCA-TCTTGAATACTCTCAGGATTCGAAGTTACAAATGA
129 TCGAAAAA-TGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * *
23639531 ACTCTTAAATGTTTGGCAAGTTCAG-
192 ACTCATAAAAGTTTGACAAGTT-TGT
* * *
23639556 AAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACGAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* ** * **
23639621 AAGTTGCTTACAAAATGACAAACTATTTAGACCAAATGATATGATTTCTCGAGCATAAAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* *
23639686 G-AAAATGGCTCAAAGGAATGGATAGTCTTGAATGCTTTAAGGAACAAAAGTTATAAAAGAACTC
131 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * *
23639750 GTAAAACTTTGACTAGTTTGT
196 ATAAAAGTTTGACAAGTTTGT
* * **
23639771 AAGTTAGT-TATAGAACCAAGAGAGAAACAATTCTCATTTAAATAAGTTTTTAATTCAAAGACCA
1 AAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * ***
23639835 AAAGTCGTTTACATAATTAAAAACTATTTAGAATGAATGATGCGATTTCCCGAGCATGGAATGTT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-T
* * * * * * ** * **
23639900 TGGAAAATTGG-TCGAAGGAATGGATTGTCTT-AATGCTCTAAAAAATCGGAGTTATAAAAG-AC
129 TCGAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * *
23639962 AT-ATAAATGTTGGACAAGTTCGA
194 -TCATAAAAGTTTGACAAGTTTGT
* *
23639985 AAGTTCCTCCAAGAACCAAGAGAGGAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * *
23640050 AAGTTGTTTACAAAATGACAAACTACTTAAACCAAATGATGCGATTT-CC-AGCTTGGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* ** * * * *
23640113 GAGAAATTCCTCAAAGGAATGGATCGCCTTGAATACTTTAACGAACCGAAGTTATAAAATG-ACT
131 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA-GAACT
* * *
23640177 CGTAATAGTTTGACTAGTTTGT
195 CATAAAAGTTTGACAAGTTTGT
* * *
23640199 AAGTTCGTCCTAGAACC-A-AGAGAAACAATACTCACGTAAATAAGTTTTTAATTCGAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * *
23640262 AAGTTGTTTACAAAATGACAAAGTTTTTAGACCGAATGATACGA-TTCCCGAGCATGGAAAGTTT
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * *
23640326 GAAAAATTGG-TCGAAGGAATGGATCA-TTTTGAATACTCTCAA-GAACCGAAGTTACAAAAGAA
131 GAAAAA-TGGCTCAAAGGAATGGAT-AGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAA
* * * ***
23640388 CTCTTAAATGTTTGGCAAG-TACA
193 CTCATAAAAGTTTGACAAGTTTGT
* *
23640411 AATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACGA
1 AA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * *
23640476 AAAGTTGTTTACAAAATGACGAACTATTTAGACAAAATGATGCGATTTCCCAAACATAGAATGTT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* *
23640541 TGAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACT
130 CGAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
** *
23640606 TGTAAAAGTTTGACTAGTTTGT
195 CATAAAAGTTTGACAAGTTTGT
23640628 AAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
1 AAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * *** * *
23640692 AAAGTTGTTTACAAAATTAAAAACTATTTAGAATGAATGATGCGATTACCCGAGGATGGAATGTT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * * ** *
23640757 CGAAAAATTAG-TCGAAGGAATGGATTGTCTTTAATGCTCTCT-A--AACTGAAGTTCTAAAAG-
130 CGAAAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACT-T-TAAGGAACCAAAGTTATAAAAGA
* * * * *
23640817 ACTTATAAATGTTGGACAAGTTCGG
192 ACTCATAAAAGTTTGACAAGTTTGT
* * *
23640842 AAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* *
23640907 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATAGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* ** * * *
23640972 GAAAAATGGCTTAAACAAATGGACAGTCTTGAATACTTTAAGGAACAAAAGCTATAAAAGAACTC
131 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* **
23641037 GTAAAAGTTTGATTAGTTTGT
196 ATAAAAGTTTGACAAGTTTGT
23641058 AAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
1 AAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * ***
23641122 AAAGTCGTTTACAAAATTAAAAACAATTTAGAATGAATGATGCGATTT-CCGAGCATGGAATGTT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * ** * **
23641186 CGGAAAATTGG-TCGAAGGAATGGATTGTCTTTAAGGCTCTCAA--AAGCTGAAGTTATAAAAG-
130 C-GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAA-CCAAAGTTATAAAAGA
* * * *
23641247 ACTTATAAATGTTGGACAAGTTTGG
192 ACTCATAAAAGTTTGACAAGTTTGT
* *
23641272 AAGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
23641337 AAGTTGTTTACTAAATGACAAACTACTTAGACCAAATGATGCGGTTT-CC-AGCTTGGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * * * *
23641400 GAGAAATTGCTCAAAGGAATGGATCGCCATGAATACTTTAACGAACTAAAGTTATAAAAGGACTC
131 GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * *
23641465 GTAATAGTTTGACTAGTTCGT
196 ATAAAAGTTTGACAAGTTTGT
23641486 AAGT
1 AAGT
23641490 CCTTTCGAGA
Statistics
Matches: 4632, Mismatches: 825, Indels: 259
0.81 0.14 0.05
Matches are distributed among these distances:
210 69 0.01
211 57 0.01
212 246 0.05
213 561 0.12
214 934 0.20
215 1238 0.27
216 1098 0.24
217 427 0.09
218 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (216 bp):
AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
ATAAAAGTTTGACAAGTTTGT
Found at i:23641684 original size:181 final size:178
Alignment explanation
Indices: 23641343--23641685 Score: 454
Period size: 181 Copynumber: 1.9 Consensus size: 178
23641333 CCAAAAGTTG
* * * * * *
23641343 TTTACTAAATGACAAACTACTTAGACCAAATGATGCGGTTTCCAGCTTGGAATGTTCGAGAAATT
1 TTTACAAAATGACAAACTACTTAGACCAAATGATGCGATTTCCAGCATGGAATGCTCGAAAAATG
* * * *
23641408 GCTCAAAGGAATGGATCGCCATGAATACTTTAACGAACTAAAGTTATAAAAGGACTCGTAATAGT
66 GATCAAAGGAATGGATAGCCATGAATACTTTAACGAACCAAAGTTATAAAAGAACTCGTAATAGT
* *
23641473 TTGACTAGTTCGTAAGTCCTTTCGAGAACCAATAGAACTAATTTTTTT
131 TTGACTAGTTCGTAAGTCCGTCCGAGAACCAATAGAACTAATTTTTTT
* *
23641521 TTTACAAAATTACAAAACTATTTAGACCAAATGATGCGATTTCCAGGGCATGGAATGCTCGAAAA
1 TTTACAAAATGAC-AAACTACTTAGACCAAATGATGCGATTTCCA--GCATGGAATGCTCGAAAA
* * * *
23641586 ATGGATCAAAGGAATGTATAGCCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAA-
63 ATGGATCAAAGGAATGGATAGCCATGAATACTTTAACGAACCAAAGTTATAAAAGAACTCGTAAT
* * *
23641650 AGGTTTGACTAGTTTGTAAGTTCGTCCTAGAACCAA
128 A-GTTTGACTAGTTCGTAAGTCCGTCCGAGAACCAA
23641686 GAGAGAAACA
Statistics
Matches: 140, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
178 11 0.08
179 29 0.21
180 1 0.01
181 99 0.71
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.29
Consensus pattern (178 bp):
TTTACAAAATGACAAACTACTTAGACCAAATGATGCGATTTCCAGCATGGAATGCTCGAAAAATG
GATCAAAGGAATGGATAGCCATGAATACTTTAACGAACCAAAGTTATAAAAGAACTCGTAATAGT
TTGACTAGTTCGTAAGTCCGTCCGAGAACCAATAGAACTAATTTTTTT
Found at i:23642148 original size:216 final size:216
Alignment explanation
Indices: 23641521--23651199 Score: 9500
Period size: 216 Copynumber: 45.2 Consensus size: 216
23641511 TAATTTTTTT
* * * * *
23641521 TTTACAAAATTACAAAACTATTTAGACCAAATGATGCGATTTCCAGGGCATGGAATGCTCGAAAA
1 TTTACAAAATGAC-AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAA
* * * *
23641586 ATGGATCAAAGGAATGTATAGCCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAA
65 ATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * *
23641651 GGTTTGACTAGTTTGTAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTTT
130 AGTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* *
23641716 TTAATTCGAAGATCAAAAGTTG
195 TTAATTCAAAGACCAAAAGTTG
* * * * * *
23641738 TTTACAAAATGACAAAGTTTTTAGA-CAAATGATGTGA-TTCCCGAGCATTGAAAGTTTGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCAAAAA
* * * * * * ** * * *
23641801 TTGG-TCGAACGAATGGATCGTCTTGAATACTCTCAGGATTCGAAGTTACAAAAGAACTCTTAAA
65 ATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * * * * * * *
23641865 TGTTTG-CAAGTTCGAAAGTTCATC-TAAAAACCAACAGAGAAACAATTCTCACATAAATAAGTT
130 AGTTTGACTAGTTTGTAAGTTCGTCAT-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
**
23641928 TTTAATTCAAAGATGAAAAGTTG
194 TTTAATTCAAAGACCAAAAGTTG
* *
23641951 TTTACAAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCGAGCATAGAATGTTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* *
23642016 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGCAACAAAAGTTATAAAAGAACTCGTAAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* * *
23642081 GTTTGACTAGTTTGTAAGTTCATCATAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
23642146 TAATTCAAAGAGCAAAAGTTG
196 TAATTCAAAGACCAAAAGTTG
* * * * *** * * * **
23642167 TTTACAAAATTAAAAACTAGTAAGAATGAATGAAGCAATTTCCCGAGCGTGGAATGTTTGGAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCAAAAA
* * * * * * * * *
23642232 TTGG-TCGAAGAAATGGATCGTCTTTAATGA-TCTT-AGAAACTAATGTTATAAAAGAACTTGTA
65 ATGGCTCAAAGGAATGGATAGTCTTGAAT-ACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTA
* ** ** *
23642294 AATGTTTGAAAAGTAAGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
128 AAAGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* *
23642358 TTTTTAATTGAAAGACCAAAAGTTA
192 TTTTTAATTCAAAGACCAAAAGTTG
* * * *
23642383 TTTACAAAATGACAAACTATTTAGACCAAATGATACGATTT-CC-AGCTTGGAATGTTCGAGAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * * * * * *
23642446 TTGCTCAAAGAAATCGATCGCCTTGAATACTATAACGAACCGAAGTTATAAAAGGACTCGTAATA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* ** * *
23642511 GTTTGACTAGTTCGTAAGTTCGTCCGAGAACCAATAGAGAAATAATTCTCACGTAAATAAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *** *
23642576 TAATTAAAAGACTAATTTTTT
196 TAATTCAAAGACCAAAAGTTG
* * **
23642597 TTTACTAAATGACAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGCTT-GGAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCAAAAA
* * **
23642661 ATGGCTCAAAGGAATGGATAGCCTTGAATACTTTAAGGAACCAAAGTTATAAATGAACTTATAAA
65 ATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* *
23642726 AGTTTGACTAGTTTGTAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTTT
130 AGTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* *
23642791 TTAATTCGAAGACGAAAAGTTG
195 TTAATTCAAAGACCAAAAGTTG
* * * * * * *
23642813 TTTACAGAATGACAAAGTTTTTAGACGAAATGATGTGA-TTCCCGAGCATTGAAAAT-TTGAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA-TG-GAATGTTCAAAA
* * * * ** * ** * * *
23642876 ATTGG-TCGAACGAATGGATCGTCTTGAATACCCTCAGGATTCGAAGTTACAAAAGAACTCTTAA
64 AATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAA
* * * ** *
23642940 ATGTTTGGCAAGTCCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
129 AAGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
**
23643004 TTTTAATTCAAAGAAGAAAAGTTG
193 TTTTAATTCAAAGACCAAAAGTTG
* ** * *
23643028 TTTACAAAATGACAAACTATTTAGATCAAATGATGCGATTTCTTGAGCATAGAATGTTCGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
*
23643093 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* *
23643158 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCATGTAAATTAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
23643223 TAATTCAAACACCAAAACTCG
196 TAATTCAAAGACCAAAAGTTG
* * *** * * *
23643244 TTTACAAAATTAAAAACTATTTAGAATGAATTATGCGATTTCCCGAGCACGGAATATTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * * * *
23643309 TTGG-TCGAAGAAATGGATTGTCTTTAATGCTCTT-AGAAACCGAAGTTATAAAAGAACTTGTAA
66 -TGGCTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAA
* * ** * *
23643372 ATGTTTGACAAGTAAGGAAGTTCGTCCA-AGAACCAAGAGAGAAATAATTCTCACGTAAATAAGT
129 AAGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* *
23643436 TTTTAATTGAAAGACGAAAAGTT-
193 TTTTAATTCAAAGACCAAAAGTTG
* * * **
23643459 TATTACAAAATGAAAAACTATGTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGGAAA
1 T-TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAA
* * * *** *
23643524 ATTGCT-AGAAGGAATGGATCA-TCGTGAATGCTTTAAGGAATTGAAGTTATAAAAGAACTCATA
65 ATGGCTCA-AAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTA
* ** * *
23643587 AAAGCTTGAGAAGTTTGGAAGTTCGTC-TAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAG
128 AAAGTTTGACTAGTTTGTAAGTTCGTCAT-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* **
23643651 TTTTTAATTTAAAGATGAAAAGTTG
192 TTTTTAATTCAAAGACCAAAAGTTG
* * * * *
23643676 TTTA-ATAAAAGACAAACTATTTAGACCAAATGATTCGATTTCTCGGGCATTGAATGTTCAGAAA
1 TTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAA
* * * * *
23643740 ATTGG-TCGAAGGAAT-GATAGTCCTGAATACTTTGAGGAACCAAAGTTATAAAAGAACTCATAA
64 AATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAA
* *
23643803 AAGTTTGACAAGTTTAG-AAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCATGTAAAT-A-
129 AAGTTTGACTAGTTT-GTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
*
23643864 TTTTTAATTCAAAGACGAAAAGTTG
192 TTTTTAATTCAAAGACCAAAAGTTG
* * * * * * * **
23643889 ATTACAAAAAGAAAAACTATTTAGAACAAATGTTGCGATTTCCTGAGAATGGAATGTTCGGAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * *
23643954 TGGCTCAAAGGAATGGATAGTCTTGAATACTTCAGGGAACCAAAGTTATATAAAAAACTCGTTAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATA-AAAGAACTCG-TAA
* * * *
23644019 AA-TTTGACTACTTCGTAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
129 AAGTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
23644083 TTTAATTCAAAAATCAAAAGTTG
194 TTTAATTCAAAGACCAAAAGTTG
* * * * * * * *
23644106 TTTACAAAGTGACAAAGTTTTTAGACCGAATGTTACGA-TTCCCGAGCATTGAAAGTTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * * * * * *
23644170 TTGG-TCGAACGAATGGATCGTCTTGAATACTCTCAGGGACTAAAGTTACAAAAGAACTCTTAAT
66 -TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* ** * *
23644234 AGTATGACTAGTTCT-TAAGTTCGTCGGAGAACTAAGAGAGAAACAATTTTCACGTAAATAAGTT
130 AGTTTGACTAGTT-TGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * ** *
23644298 TTTAATTCAAAGGCGAATTATTTTT
194 TTTAATTCAAAGACCAA--AAGTTG
* * * * *
23644323 TTTACAAAATGACAAACTATTTAGACCAAATAACGCGATTTCCAGAGCATGGAATGCT-AGGAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAA
* *
23644387 ATGGCTCAAAGGAATGGATAGCCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAA
65 ATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * * * *
23644452 AGTTTGACCAGTTTGTAAGTTCGTCCTAGAACGAAGGGAGAAACAATTCTCACGTGAATAAGTTT
130 AGTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
*
23644517 TTAATTCGAAA-ACCAAGAGTTG
195 TTAATTC-AAAGACCAAAAGTTG
* * * *
23644539 TTTACAAAATGAAAAACTATTTAGAACAAATGTTGCGATTTCCTGAGCATGGAATGTTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * *
23644604 TGGCTCAAAGGAATGGACAGTCTTGAATACTTCAAGGAACCAAAGTTATAAAAAAACTCGTAAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
23644669 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
23644734 TAATTCAAACACCAAAACTCG
196 TAATTCAAAGACCAAAAGTTG
* * *** * *
23644755 TTTACAAAATTAAAAACTATTTAGAATGAATTATGCGATTTCCCGAGCACGGAATGTTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * * * * * *
23644820 TTGG-TCGAAGAAATGGATTGTCTTTAATGCTCTCAGAAACCGAAGTTATAAAAGAACTTGTAAA
66 -TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * ** * *
23644884 TGTTTGACAAGTAAGGAAGTTCGTCCA-AGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTT
130 AGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
23644948 TTTAATTGAAAGACGAAAAGTTA
194 TTTAATTCAAAGACCAAAAGTTG
* * * * * * *
23644971 TTTACGAAATGGCAAACTA-TTAGACCAAATGATACGATTT-CC-AGCTTGGAATATTCGAGAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * ** * *
23645033 TTGCTCAAAGGAATGGATCGCCTTGAATACTTTAATGAACCGAAGTTATAAAAGGGCTCATAATA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* ** * *
23645098 GTTTGACTAGTTCGTAAGTTCGTCCGAGAACCAATAGAGAAACAATTCTCACGGAAATAAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* *
23645163 TAATTCAAATACCAAAATTTG
196 TAATTCAAAGACCAAAAGTTG
* * * **
23645184 TTTATAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTTGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * * * **
23645249 TGGCAT-AAAGGAATGGATCA-CCTTTAATAGTTTAAGGATCCGAAGTTATAAAGGAGCTTATAA
66 TGGC-TCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAA
* * * * *
23645312 AAGTTTTACAAGTTTAG-AAGTTCGTCCA-AGAACCAAGAGAGAAACAATTGTCATGTAAA-CA-
129 AAGTTTGACTAGTTT-GTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* *
23645373 TTTTTAATTGAAAGACGAAAAGTT-
192 TTTTTAATTCAAAGACCAAAAGTTG
* * ***
23645397 TATTACAAAATGA-AAATCTATTTAGACCAAATGATGCGATTTCTCAAGCATGGAATGTTTGGAA
1 T-TTACAAAATGACAAA-CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAA
* ** * * * * *
23645461 AATTGCTTGAAGGAATGGATCGTCGTGAATACTTTAACGAACTGAAA-TTATAAAAGAACTCATA
64 AATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAAC-CAAAGTTATAAAAGAACTCGTA
* * * * * * *
23645525 AAAGCTTGACAAGTTCAG-ATGTTTGTCCTAGAACCAAGAGAGAAACAATTCTCACGTGAATAAG
128 AAAGTTTGACTAGTT-TGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
*
23645589 TTTTTAATTCGAAGACCAAAAGTTG
192 TTTTTAATTCAAAGACCAAAAGTTG
* * * * * * *
23645614 TTTACAAAATGACAAAGTTTTTAGACGAAATGATGTGA-TTCCGGAGCATTGAAAGTTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * ** * * *
23645678 TTGG-TCGAACGAATGGATCA-TCTTGAATACTCTAAGGATTCGAAGTTACAAAAGAACTCTTAA
66 -TGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAA
* * * * *
23645741 ATGTTTGACAAGTTCGAAAGTTCGTC-TAAGAACCAAGAGAGAAACAATTGTCACGTAAATAAGT
129 AAGTTTGACTAGTTTGTAAGTTCGTCAT-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
*
23645805 TTTTAATTCAAAGACGAAAAGTTG
193 TTTTAATTCAAAGACCAAAAGTTG
* *
23645829 TTTACAAAATGACGAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGTTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * *
23645894 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGCAACAAAAGTTACAAAAGAACTCGTAAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* * * * * * *
23645959 GTTAGACTAGTTTGTAAGTTCATCCTAGAACAAAGAGAGAAACTATTATTACGTAAATAAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
23646024 TAATTCAAAGACCAAAAGTTG
196 TAATTCAAAGACCAAAAGTTG
* * *** **
23646045 TTTACAAAATTAAAAACTATTTAGAATGAATGATGCGATTTTTCGAGCATGGAATGTTCGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAA
* ** * * * * * ** *
23646110 ATGG-TCGAATAAATGGATCGTCTTCAATGA-TCTCAGAAACTGAAGTTGTAAAAGAACTCGTAA
65 ATGGCTCAAAGGAATGGATAGTCTTGAAT-ACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAA
* * * ** * *
23646173 ATGTTTAACAAGTAAGGAAGTTCGTCCA-AGAACCAAGAGAGAAA-AATTCTCACGTAAATAACT
129 AAGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
*
23646236 TTTTAATT-AAAGACGAAAAGTTG
193 TTTTAATTCAAAGACCAAAAGTTG
* * *
23646259 TTTA-ATAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATTGAATGATCGAAAA
1 TTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAA
* * *
23646323 ATGGCTCAAAGGAATGGGTAGTCTTGAATACTTTAAGGAACCAAAGTTATAAATGAACTTGTAAA
65 ATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * * *
23646388 AGTTTGACTAGCTTGTAAGTTCGACCTAGAACCAAGAGAGAAACAAATTCTCACGTGAATAAGTT
130 AGTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAAC-AATTCTCACGTAAATAAGTT
*
23646453 TTTAATTCAATGACCAAAAGTTG
194 TTTAATTCAAAGACCAAAAGTTG
* * * ** * *
23646476 TTTACAAAATGACAAAGTTTTTAGACAAAATGATATGA--TCCCGAGCATTGAAAGTTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * ** * * *
23646539 TTGG-TCGAACGAATGGATCGTCTTGAATACTCTCAGGATTCGAAGTTACAAAAGAACTCTTAAA
66 -TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * * * *
23646603 TGTTTGACAAGTTCGGAAGTTCGTC-TAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
130 AGTTTGACTAGTTTGTAAGTTCGTCAT-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
23646667 TTTAATTCAAAGACGAAAAGTTG
194 TTTAATTCAAAGACCAAAAGTTG
* * *
23646690 TTTACAAAATGACGAACTATTTAGACCAAATGATGCGATTTCCAGAGCATAGAATGTTCAGAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAA
* *
23646755 ACGGCTCAAAGGAATGGATAGTCTTGAATACTTT-----ACAAAAGTTATAAAAGAACTCGTAAA
65 ATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * * * * * *
23646815 AGTTTGACTAGTTTGTAAGTTCATCCTAGAACAAAGAGAGAAACAATTATCACATTAATAAATTT
130 AGTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* *
23646880 TCAATTCTAAGACCAAAAGTTG
195 TTAATTCAAAGACCAAAAGTTG
* * ***
23646902 TTTACAAAATTAAAAACTATTTAGAATGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAA
* * ** * * * * * * *
23646967 TTGGC-CGAATAAATGGATCGTCTTTAATTA-TCTCAGAAACTAAAGTTATAAAAGAACTTGTAA
65 ATGGCTCAAAGGAATGGATAGTCTTGAA-TACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAA
* * ** * * *
23647030 ATGTTTGACAAGTAAGGAAGTTTGTCCA-AGAACCAAGAGAGAAAGAATTCTCACGTAAATAAGT
129 AAGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
*
23647094 TTTTAATTCAAAGACCAAAAGTTA
193 TTTTAATTCAAAGACCAAAAGTTG
* * * * *
23647118 TTTACAAAATAATAAACTATTTAGACCAAATGATGCGATTT-CC-AGCTTGGAATGTTCGAGAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * ** * * * *
23647181 TTGCACAAAGGAGTGGATCGCCTTGAATACTTTAACAAACCGAAGTTATACATGAACTTGTAAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* * * * * * *
23647246 GTTTGACTAGTTTGTAAATTCATCCTAGAACCAAGAGAGAATCAATTCTCACTTGAATAGGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
23647311 TAATTCAAAGACCCAAAGTTG
196 TAATTCAAAGACCAAAAGTTG
** * * ** * * * *
23647332 TTTATGAAATGAC--AGTTTTTAGATGAAATGATGTGA-TTCCCGAGCATTGAAAGTTTGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCAAAAA
* * ** * * ** * * *
23647394 TTGG-TCGAACAAATGGATCGTCTTGAATACTCTAAGGATTCGAAGTTACAAAAGAACTCTTAAA
65 ATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * * * *
23647458 TGTTTCG-CAAGTTTGGAAGTTCGTCCA-AGAACCAAGAGAGAAATAATTCTCATGTAAATAAGT
130 AGTTT-GACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
*
23647521 TTTTAATTCAAAGACGAAAAGTTG
193 TTTTAATTCAAAGACCAAAAGTTG
* * * * ***
23647545 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAACATAGAATATTTGGAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
*
23647610 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* *
23647675 GTTTGACTAGCTTGTAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
23647740 TAATTCAAAGACCAAAAGTTG
196 TAATTCAAAGACCAAAAGTTG
* * *** *
23647761 TTTACAAAATTAAAAACTATTTAGAATGAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCAAAAA
* * * * * * * * *
23647826 TTGG-TCGAAGAAATGGATCGTCTTTAATGCTCTCAA-AAACCAAAGTTATAAAAGAACTTG-AA
65 ATGGCTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAA
* * ** * * * *
23647888 ATGTTTGACAAGTAAGGAAGTTTGTCCA-AGAACCAAAAGAGAAACAATTCTCACATAAATAAGT
129 AAGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* *
23647952 TTTTAATTGAAAGACCAAAAGTTA
193 TTTTAATTCAAAGACCAAAAGTTG
* * * * *
23647976 TTTACAAAATGACATACTATTTAGACCAAATGATGCGATTT-TC-AGCTTGGAATGTTCGAGAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
** * * * * * *
23648039 TTACGCAAAGGAATGGATCA-CCTTGAATACTTTAACGAACCGAAGTTATAAAAGGACTCGTAAT
66 TGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * * *
23648103 AGTTTGACTAGTTCGTAAGTTCGTCCA-AGAACCAATAGAGAAACAATTCTCATGTAAATAA-AT
130 AGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
23648166 TTTAATTCAAAGACCAAAATTTG
194 TTTAATTCAAAGACCAAAAGTTG
* * **
23648189 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCTAGTATGGAATGTTCGGAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* *
23648254 TGGCTCAAAGGAATGGATAGTCTTGAATACTTCAAGGAACCAAAGTTGTAAAAGAACTCGTAAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* *
23648319 GTTTGACTAGTTCGTAAGTTCGTCCTAGAACC-A-AGAGAAACAATTCTCACGTAAATAAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
23648382 TAATTCGAAGACCAAAAGTTG
196 TAATTCAAAGACCAAAAGTTG
* * * ** * * *
23648403 TTTAC--AA--ACAAAGTTTTTAAACTGAATGATACGA-TTCCCGAGCATGGAAAGTTCGGAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAA
* * * * * * * *
23648463 TTGG-TCGAAGGAATGGATCGTCTTGAATACTCTCAA-GAAACGAAGTTACAAAAGAACTCTTAA
65 ATGGCTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAA
* * * ** * * * * * * * *
23648526 ATGTTTGGCAAGTACGGATGTTCGTCCA-AAAACCATGAAAGAAACAATTCTCATGAAAAGAAGT
129 AAGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
**
23648590 TTTTAATTCAAAGACCAAAAGTAA
193 TTTTAATTCAAAGACCAAAAGTTG
* * * * * * * *
23648614 TTTAGAAAATGATAAACTATTTAGCCCAAATAATGCGATTTCCCAAGCGTGGAGTGTTCGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * * * * *
23648679 TTGCACAAAGGAATGGTTCA-CCTTTAATAGTTTAAGGAACCGAAGTTATAAAAAAACTCATAAA
66 TGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * * * *
23648743 AGTTTGACAAGTTTAG-AAGTTTGTCCA-AGACCCAAGAGAGAAACAATTGTCATGTAAAT-A-T
130 AGTTTGACTAGTTT-GTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
*
23648804 TTTTAATT-AAAGGACGAAAAGTT-
193 TTTTAATTCAAA-GACCAAAAGTTG
* * *
23648827 TATTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTT-AGGAA
1 T-TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAA
* ** * * * *
23648891 AATTGCTTGAAGGAATGGATCGTCGTGAATACTTTAAGGAACTGAAA-TTATAAAAGAACTCATA
64 AATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAAC-CAAAGTTATAAAAGAACTCGTA
* * * * * * *
23648955 AAAGCTTGACAAGTTCGGAAGTTCGTCCA-AAAACCAAAAGAGAAACAAATTCTCACGTGAATAA
128 AAAGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAAC-AATTCTCACGTAAATAA
*
23649019 GTTTTTAATTCAATGACCAAAAGTTG
191 GTTTTTAATTCAAAGACCAAAAGTTG
* * * * * *
23649045 TTTACAAAATGACAAAGTTTTTAGACGAAATGATGTGA--TCCCGAGCATTGAAAGTTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * ** * ** * * *
23649108 TTGG-TCGAACGAATGGATTTTCTTGAATACTCTT-ACGATTCGAAGTTACAAAAGAACTCTTAA
66 -TGGCTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAA
* * * * * *
23649171 ATGTTTGACAAGTTCGGAAGCTCGTC-----ACCAAGAGAGAAACAATTCTCACATAAATAAGTT
129 AAGTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
23649231 TTTAATTCAAAGACGAAAAGTTG
194 TTTAATTCAAAGACCAAAAGTTG
* * *
23649254 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATAGAATGTTCAGAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* *
23649319 TGGGTCAAAGGAAT--A-A-----G-------T-A-GAA-AAAAGTTATAAAAGAACTCGTAAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* * * *
23649366 GTTTGACTAGTTTGTAAGTTCGTCCTAGAACAAAGAGAGAAACAATTATCACATAAATAAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
23649431 TAATTCAAAGACCAAAAGTTG
196 TAATTCAAAGACCAAAAGTTG
* * *** * * *
23649452 TTTACAAAATTAAAAACTATTTAGAATGAATGTTGTGA-TTCCCGAGCATGGAATGTTTAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * * ** * *
23649516 TTGG-TCGAAGAAATGGATCA-TCTTTAATGA-TCTCAGAAACTGAAGTTATAAAATAACTTGTA
66 -TGGCTCAAAGGAATGGAT-AGTCTTGAAT-ACTTTAAGGAACCAAAGTTATAAAAGAACTCGTA
* * ** * * *
23649578 AATGTTTGACAAGTAAGGAAGTTCGTCCA-AGAACCAAGAGAAAAACAATTCTGACGTAAATAAG
128 AAAGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
*
23649642 TTTTTAATTCAAAGACCAAAAGTTA
192 TTTTTAATTCAAAGACCAAAAGTTG
* * ** *
23649667 TTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTT-CC-AGCTTGGAATGTTTGAGAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * * * * * *
23649730 TTGCTCAAAGGAATGGATTGCCTTTAATACTTTAATGAATCGAAGTTATCAAAGGACTCGTAATA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* * *
23649795 GTTTGACTAGTTCGTAAGTTCGTC-TGAGAACCAATAGAGAAACAATTCTCACTTAAATAAGTTT
131 GTTTGACTAGTTTGTAAGTTCGTCAT-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
23649859 TTAATTCAAAG-TC-TAATTTT
195 TTAATTCAAAGACCAAAAGTTG
* * *
23649879 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGCTCGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * *
23649944 TGGCTCAAAGGAATGAATAGCCTTGAATACTTTAAGGAACCAAAGTTATAAATGAACTTGTAAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* *
23650009 GTTTGACTAGTTTGTAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
23650074 TAATTCAAAGACCAAAAGTTG
196 TAATTCAAAGACCAAAAGTTG
* * * * * * * * *
23650095 TTTAC-AAATGAC--AGTTTTTTGACGAAATAATGTGA-TTCCCAAGCATTGAAAGTTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* ** * * ** * * *
23650156 TTGG-TCGAACAAATGGATTGTCTTGAATAC-TCACAGGATTCGAAGTTACAAAAGAACTCTTAA
66 -TGGCTCAAAGGAATGGATAGTCTTGAATACTTTA-AGGAACCAAAGTTATAAAAGAACTCGTAA
* * * * *
23650219 ATGTTTGGC-ATGTTCAG-AAGTTCATCCA-AGAGCCAAGAGAGAAACAATTCTCACGTAAATAA
129 AAGTTTGACTA-GTT-TGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
*
23650281 GTTTTTAATTCAAAGACGAAAAGTTG
191 GTTTTTAATTCAAAGACCAAAAGTTG
* ** * * * *
23650307 TTTACAGAATGACAAACTATTTAGA-CAAATGATGTTATTTCCCGAACTTAGAATGTTCGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * *
23650371 TGACTTAAAGGAATGGATAGTCTTGAATACTTTAAGCAACAAAAGTTATAAAAGAACTCGTAAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* *
23650436 GTTTGACTAGTTTGTAAGTTCGTCCTAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
23650501 TAATTCAAAGACCAAAAGTTG
196 TAATTCAAAGACCAAAAGTTG
* * *** *
23650522 TTTACAAAATTAAAAACTATTTAGAATGAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAT
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * * * * *
23650587 TGG-TCGAAGAAATGGATCGTCTTTAATGCTCTCAA-AAACAAAAGTTATAAAAGAACTTGTAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * ** * * * *
23650650 TGTTTGACAAGTAAGGAGGTTTGTCCA-AGAACCAAGAGAGAAACAATTCTGACGTAAATAAGTT
130 AGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
23650714 TTTAATAGAAAAACCAAAAGTTA
194 TTTAATTCAAAGACCAAAAGTTG
* * ***
23650737 TTTACAAAATGACAAACTATTTAGACCAAATGATACGATTT-CC-AGCTTGGAATGTTCGGGAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * * * * *
23650800 TTG-TGCAAAGGAATGGATCGCCTTGAATACTTTAAGGAATCGAAGTTATAAATGGACTCGTAAT
66 TGGCT-CAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* ** *
23650864 AGTTTGACTAGTTCGTAAGTTCGTCCGAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTT
130 AGTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
*
23650929 TTAATTCAAAGACCAAAAATTTG
195 TTAATTCAAAGACC-AAAAGTTG
* * * * **
23650952 TTTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCCCTAGTATGGAATGTTCGGAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * *
23651017 TGGCTCAAAGGAATGGATAGGCTTGAATACTTCAAGGAACAAAAGTTGTAAAACAACTCGTAAAA
66 TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
** * *
23651082 GTTTGACTAGTTCATAAGTTCGTCCTAGAA-CAA-AAAGAAACAATTCTCACGTAAATAAGTTTT
131 GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
23651145 TAATTCAAAGACCAAAAGTTG
196 TAATTCAAAGACCAAAAGTTG
* * * *
23651166 TTTACGAAATGACAAAGTTTTTAGACCGAATGAT
1 TTTACAAAATGACAAACTATTTAGACCAAATGAT
23651200 ACTTATACAA
Statistics
Matches: 7732, Mismatches: 1490, Indels: 483
0.80 0.15 0.05
Matches are distributed among these distances:
193 40 0.01
194 2 0.00
195 2 0.00
197 30 0.00
198 88 0.01
199 1 0.00
201 1 0.00
203 1 0.00
209 162 0.02
210 49 0.01
211 101 0.01
212 378 0.05
213 686 0.09
214 1498 0.19
215 1723 0.22
216 2435 0.31
217 395 0.05
218 137 0.02
219 3 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (216 bp):
TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAA
TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
GTTTGACTAGTTTGTAAGTTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
TAATTCAAAGACCAAAAGTTG
Found at i:23644273 original size:645 final size:646
Alignment explanation
Indices: 23641521--23651199 Score: 9858
Period size: 645 Copynumber: 15.1 Consensus size: 646
23641511 TAATTTTTTT
* * * * *
23641521 TTTACAAAATTACAAAACTATTTAGACCAAATGATGCGATTTCCAGGGCATGGAATGCTCGAAAA
1 TTTACAAAATGAC-AAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA
* * * * * *
23641586 A-TGGATCAAAGGAATGTATAGCCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-TGTA
65 ATTGG-TCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACTAAAGTTATAAAAGAACTCT-TA
* * *
23641649 AAGGTTTGACTAGTTTGTAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGT
128 AA-GTTTGACAAGTTTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
23641714 TTTTAATTCGAAGATCAAAAGTTGTTTACAAAATGACAAAGTTTTTAGA-CAAATGATGTGA-TT
191 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * * * **
23641777 CCCGAGCATTGAAAGTT-TGAAAAATTGGTCGAACGAATGGATCGTCTTGAATACTCTCAGGATT
256 CCCGAGCATTGAATGTTCAG-AAAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAAC
* * * * * * * * *
23641841 CGAAGTTACAAAAGAACTCTTAAATGTTTG-CAAGTTCGAAAGTTCATCTAAAAACCAACAGAGA
320 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGA
* **
23641905 AACAATTCTCACATAAATAAGTTTTTAATTCAAAGATGAAAAGTTGTTTACAAAATGACAAACTA
385 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * *
23641970 TTTAGACCAAATGACGCGATTTCCCGAGCATAGAATGTTCAAAAAATGGCTCAAAGGAATGGATA
450 TTTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATA
* * *
23642035 GTCTTGAATACTTTAAGCAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGT
515 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGT
* * * * *
23642100 TCATCATAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGAGCAAAAGT
580 TCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
23642165 TG
645 TG
* * * * ** * * * * *
23642167 TTTACAAAATTAAAAACTAGTAAGAATGAATGAAGCAATTTCCCGAGCGTGGAATGTTTGGAAAA
1 TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
* * * * *
23642232 TTGGTCGAAGAAATGGATCGTCTTTAATGA-TCTTAGAAACTAATGTTATAAAAGAACT-TGTAA
66 TTGGTCGAAGGAATGGATCGTCTTGAAT-ACTCTAAGGAACTAAAGTTATAAAAGAACTCT-TAA
* **
23642295 ATGTTTGAAAAGTAAGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
129 A-GTTTGACAAGT-TTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
23642360 TTTAATTGAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTAGACCAAATGATACGATTT-
192 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * * * *
23642424 CC-AGC-TTGGAATGTTC-GAGAAATTGCTCAAAGAAATCGATCGCCTTGAATACTATAACGAAC
257 CCGAGCATT-GAATGTTCAGA-AAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAAC
* * * * * *
23642486 CGAAGTTATAAAAGGACTCGTAATAGTTTGACTAGTTCGTAAGTTCGTCCGAGAACCAATAGAGA
320 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGA
* * * *** * *
23642551 AATAATTCTCACGTAAATAAGTTTTTAATTAAAAGACTAATTTTTTTTTACTAAATGACAAACTA
385 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * *
23642616 TTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGCTT-GGAAAATGGCTCAAAGGAATGGAT
450 TTTAGAACAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATGGCTCAAAGGAATGGAT
* * ** *
23642680 AGCCTTGAATACTTTAAGGAACCAAAGTTATAAATGAACTTATAAAAGTTTGACTAGTTTGTAAG
514 AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAG
* * *
23642745 TTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTTTTTAATTCGAAGACGAAAAG
579 TTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
23642810 TTG
644 TTG
* * * * * ** *
23642813 TTTACAGAATGACAAAGTTTTTAGA-CGAAATGATGTGA-TTCCCGAGCATTGAAAATTTGAAAA
1 TTTACAAAATGACAAACTATTTAGACCG-AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA
* * * * * *
23642876 ATTGGTCGAACGAATGGATCGTCTTGAATACCCTCAGG-ATTCGAAGTTACAAAAGAACTCTTAA
65 ATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACT-AAAGTTATAAAAGAACTCTTAA
* **
23642940 ATGTTTGGCAAGTCCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
129 A-GTTTGACAAGT-TTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** *
23643005 TTTAATTCAAAGAAGAAAAGTTGTTTACAAAATGACAAACTATTTAGATCAAATGATGCGATTTC
192 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
** * * *
23643070 TTGAGCATAGAATGTTC-GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACA
257 CCGAGCATTGAATGTTCAGAAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACC
* *
23643134 AAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGT-CATAGAACCAAGAGAGA
321 AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCA-AGAACCAAGAGAGA
* * * * * * *
23643198 AACAATTCTCATGTAAATTAGTTTTTAATTCAAACACCAAAACTCGTTTACAAAATTAAAAACTA
385 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
** * * * * * *
23643263 TTTAGAATGAATTATGCGATTTCCCGAGCACGGAATATTCAAAAAATTGG-TCGAAGAAATGGAT
450 TTTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TGGCTCAAAGGAATGGAT
* * * * * * * * ** *
23643327 TGTCTTTAATGCTCTT-AGAAACCGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTAAGGAA
514 AGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAA
* * * *
23643391 GTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTGAAAGACGAAAA
578 GTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
23643456 GTT-
643 GTTG
* * * * *
23643459 TATTACAAAATGAAAAACTATGTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGGAAA
1 T-TTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA
* * * * * * * * *
23643524 ATTGCTAGAAGGAATGGATCATCGTGAATGCTTTAAGGAATTGAAGTTATAAAAGAACTCATAAA
65 ATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACTAAAGTTATAAAAGAACTC-TTAA
* * * *
23643589 AGCTTGAGAAGTTTGGAAGTTCGTCTAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
129 AGTTTGACAAGTTT-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* ** * *
23643654 TTAATTTAAAGATGAAAAGTTGTTTA-ATAAAAGACAAACTATTTAGACCAAATGATTCGATTTC
193 TTAATTCAAAGACCAAAAGTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * *
23643718 TCGGGCATTGAATGTTCAGAAAATTGGTCGAAGGAAT-GATAGTCCTGAATACTTTGAGGAACCA
257 CCGAGCATTGAATGTTCAGAAAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCA
* *
23643782 AAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTAG-AAGTTCGTCCAAGAACCAAGAGAGAA
322 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* * * * *
23643846 ACAATTCTCATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACAAAAAGAAAAACTAT
386 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * *
23643909 TTAGAACAAATGTTGCGATTTCCTGAGAATGGAATGTTCGGAAAATGGCTCAAAGGAATGGATAG
451 TTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATAG
* * * *
23643974 TCTTGAATACTTCAGGGAACCAAAGTTATATAAAAAACTCGTTAAAA-TTTGACTACTTCGTAAG
516 TCTTGAATACTTTAAGGAACCAAAGTTATA-AAAGAACTCG-TAAAAGTTTGACTAGTTCGTAAG
* * *
23644038 TTCGTCCTAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAATTCAAAAATCAAAAG
579 TTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
23644103 TTG
644 TTG
* * * * * * * *
23644106 TTTACAAAGTGACAAAGTTTTTAGACCGAATGTTACGA-TTCCCGAGCATTGAAAGTTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
* * * *
23644170 TTGGTCGAACGAATGGATCGTCTTGAATACTCTCAGGGACTAAAGTTACAAAAGAACTCTTAATA
66 TTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACTAAAGTTATAAAAGAACTCTTAA-A
* * * ** * *
23644235 GTATGACTAGTTCTTAAGTTCGTCGGAGAACTAAGAGAGAAACAATTTTCACGTAAATAAGTTTT
130 GTTTGACAAGTT-TGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * ** * * *
23644300 TAATTCAAAGGCGAATTATTTTTTTTACAAAATGACAAACTATTTAGACCAAATAACGCGATTTC
194 TAATTCAAAGACCAA--AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * *
23644365 CAGAGCATGGAATGCT-AGGAAAA-TGGCTCAAAGGAATGGATAGCCTTGAATACTTTAAGGAAC
257 CCGAGCATTGAATGTTCA-GAAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAAC
* * * * * *
23644428 CAAAGTTATAAAAGAACTTGTAAAAGTTTGACCAGTTTGTAAGTTCGTCCTAGAACGAAGGGAGA
320 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGA
* * *
23644493 AACAATTCTCACGTGAATAAGTTTTTAATTCGAAA-ACCAAGAGTTGTTTACAAAATGAAAAACT
385 AACAATTCTCACGTAAATAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * *
23644557 ATTTAGAACAAATGTTGCGATTTCCTGAGCATGGAATGTTCAAAAAATGGCTCAAAGGAATGGAC
449 ATTTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGAT
* * *
23644622 AGTCTTGAATACTTCAAGGAACCAAAGTTATAAAAAAACTCGTAAAAGTTTGACTAGTTTGTAAG
514 AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAG
* * *
23644687 TTCGTCATAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAAC
579 TTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
*
23644752 TCG
644 TTG
* * ** * * *
23644755 TTTACAAAATTAAAAACTATTTAGAATGAATTATGCGATTTCCCGAGCACGGAATGTTCAAAAAA
1 TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
* * * * * * **
23644820 TTGGTCGAAGAAATGGATTGTCTTTAATGCTCTCAGAAACCGAAGTTATAAAAGAACT-TGTAAA
66 TTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACTAAAGTTATAAAAGAACTCT-TAAA
** *
23644884 TGTTTGACAAGTAAGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTT
130 -GTTTGACAAGT-TTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * * *
23644949 TTAATTGAAAGACGAAAAGTTATTTACGAAATGGCAAACTA-TTAGACCAAATGATACGATTT-C
193 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * *
23645012 C-AGC-TTGGAATATTC-GAGAAATTGCTCAAAGGAATGGATCGCCTTGAATACTTTAATGAACC
258 CGAGCATT-GAATGTTCAGA-AAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACC
* ** * * * * *
23645074 GAAGTTATAAAAGGGCTCATAATAGTTTGACTAGTTCGTAAGTTCGTCCGAGAACCAATAGAGAA
321 AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* * * *
23645139 ACAATTCTCACGGAAATAAGTTTTTAATTCAAATACCAAAATTTGTTTATAAAATGACAAACTAT
386 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * *
23645204 TTAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTTGAAAAATGGCAT-AAAGGAATGGATC
451 TTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGC-TCAAAGGAATGGAT-
* * * * * * * ** * * *
23645268 A-CCTTTAATAGTTTAAGGATCCGAAGTTATAAAGGAGCTTATAAAAGTTTTACAAGTTTAG-AA
514 AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAG-TTCGTAA
* * * * * *
23645331 GTTCGTCCAAGAACCAAGAGAGAAACAATTGTCATGTAAA-CA-TTTTTAATTGAAAGACGAAAA
578 GTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
23645394 GTT-
643 GTTG
* * * * *
23645397 TATTACAAAATGA-AAATCTATTTAGACCAAATGATGCGATTTCTCAAGCATGGAATGTTTGGAA
1 T-TTACAAAATGACAAA-CTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAA
* * * * * *
23645461 AATTGCTTGAAGGAATGGATCGTCGTGAATACTTTAACGAACTGAAA-TTATAAAAGAACTCATA
64 AATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACT-AAAGTTATAAAAGAACTC-TT
* * * * * *
23645525 AAAGCTTGACAAGTTCAGATGTTTGTCCTAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGT
127 AAAGTTTGACAAGTT-TGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
23645590 TTTTAATTCGAAGACCAAAAGTTGTTTACAAAATGACAAAGTTTTTAGACGAAATGATGTGA-TT
191 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * * **
23645654 CCGGAGCATTGAAAGTTCAAAAAATTGGTCGAACGAATGGATCA-TCTTGAATACTCTAAGGATT
256 CCCGAGCATTGAATGTTCAGAAAATTGGTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAAC
* * * * * *
23645718 CGAAGTTACAAAAGAACTCTTAAATGTTTGACAAGTTCGAAAGTTCGTCTAAGAACCAAGAGAGA
320 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGA
* * *
23645783 AACAATTGTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACAAAATGACGAACTA
385 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * *
23645848 TTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGTTCAAAAAATGGCTCAAAGGAATGGATA
450 TTTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATA
* * * * *
23645913 GTCTTGAATACTTTAAGCAACAAAAGTTACAAAAGAACTCGTAAAAGTTAGACTAGTTTGTAAGT
515 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGT
* * * * *
23645978 TCATCCTAGAACAAAGAGAGAAACTATTATTACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
580 TCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
23646043 TG
645 TG
* * ** **
23646045 TTTACAAAATTAAAAACTATTTAGAATGAATGATGCGATTTTTCGAGCATGGAATGTTCGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
* ** * * * * * *
23646110 ATGGTCGAATAAATGGATCGTCTTCAATGA-TCTCAGAAACTGAAGTTGTAAAAGAACTCGTAAA
66 TTGGTCGAAGGAATGGATCGTCTTGAAT-ACTCTAAGGAACTAAAGTTATAAAAGAACTCTTAAA
* ** *
23646174 TGTTTAACAAGTAAGGAAGTTCGTCCAAGAACCAAGAGAGAAA-AATTCTCACGTAAATAACTTT
130 -GTTTGACAAGT-TTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
*
23646238 TTAATT-AAAGACGAAAAGTTGTTTA-ATAAATGACAAACTATTTAGACCAAATGATGCGATTTC
193 TTAATTCAAAGACCAAAAGTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * *
23646301 CCGAGCATTGAATGATC-GAAAAATGGCTCAAAGGAATGGGTAGTCTTGAATACTTTAAGGAACC
257 CCGAGCATTGAATGTTCAGAAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACC
* * * * *
23646365 AAAGTTATAAATGAACTTGTAAAAGTTTGACTAGCTT-GTAAGTTCGACCTAGAACCAAGAGAGA
321 AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGTAAGTTCGTCCAAGAACCAAGAGAGA
* * *
23646429 AACAAATTCTCACGTGAATAAGTTTTTAATTCAATGACCAAAAGTTGTTTACAAAATGACAAAGT
385 AAC-AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* ** * * * * *
23646494 TTTTAG-ACAAAATGATATGA--TCCCGAGCATTGAAAGTTCAAAAAATTGG-TCGAACGAATGG
449 ATTTAGAAC-AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TGGCTCAAAGGAATGG
* * * ** * * * * * *
23646555 ATCGTCTTGAATACTCTCAGGATTCGAAGTTACAAAAGAACTCTTAAATGTTTGACAAGTTCGGA
512 ATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTA
* *
23646620 AGTTCGT-CTAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTTTTTAATTCAAAGACGAA
577 AGTTCGTCCT-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
23646684 AAGTTG
641 AAGTTG
* * * *
23646690 TTTACAAAATGACGAACTATTTAGACCAAATGATGCGATTTCCAGAGCATAGAATGTTCAGAAAA
1 TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAA
* * * * * *
23646755 A-CGGCTCAAAGGAATGGATAGTCTTGAATACT-T----TACAAAAGTTATAAAAGAACTCGTAA
65 ATTGG-TCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACTAAAGTTATAAAAGAACTC-TTA
* * * * * * * *
23646814 AAGTTTGACTAGTTTGTAAGTTCATCCTAGAACAAAGAGAGAAACAATTATCACATTAATAAATT
128 AAGTTTGACAAGTTTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * ***
23646879 TTCAATTCTAAGACCAAAAGTTGTTTACAAAATTAAAAACTATTTAGAATGAATGATGCGATTTC
192 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * ** * * * * *
23646944 CCGAGCATGGAATGTTC-GAAAAATTGGCCGAATAAATGGATCGTCTTTAATTA-TCTCAGAAAC
257 CCGAGCATTGAATGTTCAG-AAAATTGGTCAAAGGAATGGATAGTCTTGAA-TACTTTAAGGAAC
* * * ** * *
23647007 TAAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTAAGGAAGTTTGTCCAAGAACCAAGAGAGA
320 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGA
* * * *
23647072 AAGAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATAATAAACTA
385 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * * * * *
23647137 TTTAGACCAAATGATGCGATTT-CC-AGCTTGGAATGTTCGAGAAATTGCACAAAGGAGTGGATC
450 TTTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATA
* ** * * * * * *
23647200 GCCTTGAATACTTTAACAAACCGAAGTTATACATGAACTTGTAAAAGTTTGACTAGTTTGTAAAT
515 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGT
* * * * * *
23647265 TCATCCTAGAACCAAGAGAGAATCAATTCTCACTTGAATAGGTTTTTAATTCAAAGACCCAAAGT
580 TCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
23647330 TG
645 TG
** * * * * * * *
23647332 TTTATGAAATGAC--AGTTTTTAGA-TGAAATGATGTGA-TTCCCGAGCATTGAAAGTTTGAAAA
1 TTTACAAAATGACAAACTATTTAGACCG-AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA
** * * *
23647393 ATTGGTCGAACAAATGGATCGTCTTGAATACTCTAAGG-ATTCGAAGTTACAAAAGAACTCTTAA
65 ATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACT-AAAGTTATAAAAGAACTCTTAA
* *
23647457 ATGTTTCG-CAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGTAAATAAGT
129 A-GTTT-GACAAGTTT-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
*
23647521 TTTTAATTCAAAGACGAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
191 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * **
23647586 CCCAAACATAGAATATTTGGAAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAAC
256 CCCGAGCATTGAATGTTCAGAAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAAC
* * *
23647650 AAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGCTT-GTAAGTTCGTCCTAGAACCAAGAGAG
320 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGTAAGTTCGTCCAAGAACCAAGAGAG
* *
23647714 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTAAAAACT
384 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
** * * *
23647779 ATTTAGAATGAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTGG-TCGAAGAAATGGA
449 ATTTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TGGCTCAAAGGAATGGA
* * * * * * * * ** *
23647843 TCGTCTTTAATGCTCTCAA-AAACCAAAGTTATAAAAGAACTTG-AAATGTTTGACAAGTAAGGA
513 TAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTA
* * * * *
23647906 AGTTTGTCCAAGAACCAAAAGAGAAACAATTCTCACATAAATAAGTTTTTAATTGAAAGACCAAA
577 AGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
*
23647971 AGTTA
642 AGTTG
* * * * *
23647976 TTTACAAAATGACATACTATTTAGACCAAATGATGCGATTT-TC-AGCTTGGAATGTTCGAGAAA
1 TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
* * ** * * ** * *
23648039 TTACG-CAAAGGAATGGATCACCTTGAATACTTTAACGAACCGAAGTTATAAAAGGACTCGTAAT
66 TT-GGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACTAAAGTTATAAAAGAACTCTTAA-
* * * * *
23648103 AGTTTGACTAGTTCGTAAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCATGTAAATAA-ATT
129 AGTTTGACAAGTTTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
*
23648167 TTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
193 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * *
23648232 CTAGTATGGAATGTTCGGAAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACTTCAAGGAACCA
258 CGAGCATTGAATGTTCAGAAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCA
* * *
23648296 AAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCGTCCTAGAACC-A-AGAGAAA
322 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAA
* * *
23648359 CAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAAGTTGTTTAC--AA--ACAAAGTTTT
387 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * * * * *
23648420 TA-AACTGAATGATACGA-TTCCCGAGCATGGAAAGTTCGGAAAATTGG-TCGAAGGAATGGATC
452 TAGAAC-AAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATGGCTCAAAGGAATGGATA
* * * * * * * * * * *
23648482 GTCTTGAATACTCTCAA-GAAACGAAGTTACAAAAGAACTCTTAAATGTTTGGCAAGTACGGATG
515 GTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAG
* * * * * * *
23648546 TTCGTCCAAAAACCATGAAAGAAACAATTCTCATGAAAAGAAGTTTTTAATTCAAAGACCAAAAG
579 TTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
**
23648611 TAA
644 TTG
* * * * * * * *
23648614 TTTAGAAAATGATAAACTATTTAGCCCAAATAATGCGATTTCCCAAGCGTGGAGTGTTCGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
** * * ** * * * ** * *
23648679 TTGCACAAAGGAATGGTTCACCTTTAATAGTTTAAGGAACCGAAGTTATAAAAAAACTCATAAAA
66 TTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACTAAAGTTATAAAAGAACTC-TTAAA
* * * *
23648744 GTTTGACAAGTTTAGAAGTTTGTCCAAGACCCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTT
130 GTTTGACAAGTTT-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
23648807 TAATT-AAAGGACGAAAAGTT-TATTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTC
194 TAATTCAAA-GACCAAAAGTTGT-TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * ** * *
23648870 CCGAGCATGGAATGTT-AGGAAAATTGCTTGAAGGAATGGATCGTCGTGAATACTTTAAGGAACT
257 CCGAGCATTGAATGTTCA-GAAAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAAC-
* * * * * *
23648934 GAAA-TTATAAAAGAACTCATAAAAGCTTGACAAGTTCGGAAGTTCGTCCAAAAACCAAAAGAGA
320 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGA
* * *
23648998 AACAAATTCTCACGTGAATAAGTTTTTAATTCAATGACCAAAAGTTGTTTACAAAATGACAAAGT
385 AAC-AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * * * * *
23649063 TTTTAG-ACGAAATGATGTGA--TCCCGAGCATTGAAAGTTCAAAAAATTGG-TCGAACGAATGG
449 ATTTAGAAC-AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TGGCTCAAAGGAATGG
** * ** * * * * * *
23649124 ATTTTCTTGAATACTCTT-ACGATTCGAAGTTACAAAAGAACTCTTAAATGTTTGACAAGTTCGG
512 ATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGT
* * *
23649188 AAGCTCGT-C----ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACGAA
576 AAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
23649248 AAGTTG
641 AAGTTG
* * *
23649254 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATAGAATGTTC-AGAAA
1 TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAA
* ** * *
23649318 ATGGGTC-----AA---A--G----GAATA-AGT-A-GAA-AAAAGTTATAAAAGAACTCGTAAA
65 ATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACTAAAGTTATAAAAGAACTC-TTAA
* * * * *
23649365 AGTTTGACTAGTTTGTAAGTTCGTCCTAGAACAAAGAGAGAAACAATTATCACATAAATAAGTTT
129 AGTTTGACAAGTTTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *** * *
23649430 TTAATTCAAAGACCAAAAGTTGTTTACAAAATTAAAAACTATTTAGAATGAATGTTGTGA-TTCC
193 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * * * * * * *
23649494 CGAGCATGGAATGTTTAAAAAATTGGTCGAAGAAATGGATCA-TCTTTAATGA-TCTCAGAAACT
258 CGAGCATTGAATGTTCAGAAAATTGGTCAAAGGAATGGAT-AGTCTTGAAT-ACTTTAAGGAACC
* * * * ** * *
23649557 GAAGTTATAAAATAACTTGTAAATGTTTGACAAGTAAGGAAGTTCGTCCAAGAACCAAGAGAAAA
321 AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* *
23649622 ACAATTCTGACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTAT
386 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * * * * *
23649687 TTAGACCAAATGATGCAATTT-CC-AGCTTGGAATGTTTGAGAAATTGCTCAAAGGAATGGATTG
451 TTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATAG
* * * * * * * *
23649750 CCTTTAATACTTTAATGAATCGAAGTTATCAAAGGACTCGTAATAGTTTGACTAGTTCGTAAGTT
516 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTT
* * * * *
23649815 CGT-CTGAGAACCAATAGAGAAACAATTCTCACTTAAATAAGTTTTTAATTCAAAG-TC-TAATT
581 CGTCCT-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
*
23649877 TT
645 TG
* * *
23649879 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGCTCGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
* * * * * * *
23649944 -TGGCTCAAAGGAATGAATAGCCTTGAATACTTTAAGGAACCAAAGTTATAAATGAACT-TGTAA
66 TTGG-TCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACTAAAGTTATAAAAGAACTCT-T-A
* * *
23650007 AAGTTTGACTAGTTTGTAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTT
128 AAGTTTGACAAGTTTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
23650072 TTTAATTCAAAGACCAAAAGTTGTTTAC-AAATGAC--AGTTTTTTGACGAAATAATGTGA-TTC
192 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * ** * * **
23650133 CCAAGCATTGAAAGTTCAAAAAATTGGTCGAACAAATGGATTGTCTTGAATAC-TCACAGGATTC
257 CCGAGCATTGAATGTTCAGAAAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTA-AGGAACC
* * * * * * * *
23650197 GAAGTTACAAAAGAACTCTTAAATGTTTGGCATGTTCAG-AAGTTCATCCAAGAGCCAAGAGAGA
321 AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GTAAGTTCGTCCAAGAACCAAGAGAGA
* *
23650261 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACAGAATGACAAACTA
385 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
** * * * * *
23650326 TTTAG-ACAAATGATGTTATTTCCCGAACTTAGAATGTTCGAAAAATGACTTAAAGGAATGGATA
450 TTTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATA
* * *
23650390 GTCTTGAATACTTTAAGCAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGT
515 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGT
*
23650455 TCGTCCTAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
580 TCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
23650520 TG
645 TG
* * **
23650522 TTTACAAAATTAAAAACTATTTAGAATGAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAA
1 TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
* * * * *
23650586 TTGGTCGAAGAAATGGATCGTCTTTAATGCTCTCAA-AAACAAAAGTTATAAAAGAACT-TGTAA
66 TTGGTCGAAGGAATGGATCGTCTTGAATACTCT-AAGGAACTAAAGTTATAAAAGAACTCT-TAA
** * * *
23650649 ATGTTTGACAAGTAAGGAGGTTTGTCCAAGAACCAAGAGAGAAACAATTCTGACGTAAATAAGTT
129 A-GTTTGACAAGT-TTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * * *
23650714 TTTAATAGAAAAACCAAAAGTTATTTACAAAATGACAAACTATTTAGACCAAATGATACGATTT-
192 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * *
23650778 CC-AGC-TTGGAATGTTCGGGAAATT-GTGCAAAGGAATGGATCGCCTTGAATACTTTAAGGAAT
257 CCGAGCATT-GAATGTTCAGAAAATTGGT-CAAAGGAATGGATAGTCTTGAATACTTTAAGGAAC
* * * * * * *
23650840 CGAAGTTATAAATGGACTCGTAATAGTTTGACTAGTTCGTAAGTTCGTCCGAGAACCAATAGAGA
320 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGA
*
23650905 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTTGTTTACAAAATGACAAACT
385 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACT
* * * * * *
23650970 ATTTAGACCAAATAATGCAATTTCCCTAGTATGGAATGTTCGGAAAATGGCTCAAAGGAATGGAT
449 ATTTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGAT
* * * * * *
23651035 AGGCTTGAATACTTCAAGGAACAAAAGTTGTAAAACAACTCGTAAAAGTTTGACTAGTTCATAAG
514 AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAG
*
23651100 TTCGTCCTAGAA-CAA-AAAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
579 TTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
23651163 TTG
644 TTG
* * *
23651166 TTTACGAAATGACAAAGTTTTTAGACCGAATGAT
1 TTTACAAAATGACAAACTATTTAGACCGAATGAT
23651200 ACTTATACAA
Statistics
Matches: 7516, Mismatches: 1290, Indels: 456
0.81 0.14 0.05
Matches are distributed among these distances:
621 5 0.00
622 221 0.03
623 111 0.01
624 55 0.01
625 70 0.01
626 5 0.00
627 44 0.01
630 2 0.00
633 1 0.00
635 3 0.00
637 70 0.01
638 169 0.02
639 192 0.03
640 433 0.06
641 205 0.03
642 486 0.06
643 828 0.11
644 535 0.07
645 1821 0.24
646 773 0.10
647 747 0.10
648 336 0.04
649 133 0.02
650 268 0.04
651 3 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (646 bp):
TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
TTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACTAAAGTTATAAAAGAACTCTTAAAG
TTTGACAAGTTTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
ATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA
GCATTGAATGTTCAGAAAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGT
TATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
ACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATAGTCTTG
AATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCGTCC
TAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
Found at i:23646494 original size:20 final size:20
Alignment explanation
Indices: 23646469--23646508 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
23646459 TCAATGACCA
23646469 AAAGTTGTTT-ACAAAATGAC
1 AAAGTT-TTTAACAAAATGAC
23646489 AAAGTTTTTAGACAAAATGA
1 AAAGTTTTTA-ACAAAATGA
23646509 TATGATCCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.17
20 6 0.33
21 9 0.50
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (20 bp):
AAAGTTTTTAACAAAATGAC
Found at i:23651201 original size:429 final size:428
Alignment explanation
Indices: 23649341--23651199 Score: 2029
Period size: 429 Copynumber: 4.3 Consensus size: 428
23649331 ATAAGTAGAA
**
23649341 AAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCTAGAACAAAGAGAGA
1 AAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCATAAGTTCGTCCTAGAAC-AAGAGAGA
* * * *
23649406 AACAATTATCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTAAAAACTA
65 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
*** * * * ** * * *
23649471 TTTAGAATGAATGTTGTGATTCCCGAGCATGGAATGTTTAAAAAATTGGTCGAAGAAATGGATCA
130 TTTAGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGAT-A
* * * * * ** * * * ** *
23649536 -TCTTTAATGA-TCTCAGAAACTGAAGTTATAAAAT-AACTTGTAAATGTTTGACAAGTAAGGAA
194 GCCTTGAAT-ACTTTAAGGAACAAAAGTTAT-AAATGAACTCGTAAAAGTTTGACTAGTTTGTAA
* * *
23649598 GTTCGTCCAAGAACCAAGAGAAAAACAATTCTGACGTAAATAAGTTTTTAATTCAAAGACCAAAA
257 GTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * *
23649663 GTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTT-CCAGCTTGGAATGTTTGAG
322 GTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCCCAGCATGGAATG-TTCAA
* * * * * *
23649727 AAATTGCTCAAAGGAATGGATTGCCTTTAATACTTTAATGAATC
386 AAATTGGTCAAAGAAATGGATTGTCTTGAATACTTCAAGGAA-C
* * * * * *
23649771 -GAAGTTATCAAAGGACTCGTAATAGTTTGACTAGTTCGTAAGTTCGT-CTGAGAACCAATAGAG
1 AAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCATAAGTTCGTCCT-AGAA-CAAGAGAG
* * * * *
23649834 AAACAATTCTCACTTAAATAAGTTTTTAATTCAAAG-TC-TAATTTTTTTACAAAATGACAAACT
64 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * *
23649897 ATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGCTCGAAAAATGGCTCAAAGGAATGAAT
129 ATTTAGACCAAATGATGCGATTTCC-GAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGAT
* *
23649962 AGCCTTGAATACTTTAAGGAACCAAAGTTATAAATGAACTTGTAAAAGTTTGACTAGTTTGTAAG
193 AGCCTTGAATACTTTAAGGAACAAAAGTTATAAATGAACTCGTAAAAGTTTGACTAGTTTGTAAG
*
23650027 TTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTTTTTAATTCAAAGACCAAAAG
258 TTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * ** * *
23650092 TTGTTTAC-AAATGAC--AGTTTTTTGACGAAATAATGTGA-TTCCCAAGCATTGAAAGTTCAAA
323 TTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCCC-AGCATGGAATGTTC-AA
* * *
23650153 AAATTGGTCGAACAAATGGATTGTCTTGAATAC-TCACAGGATTC
386 AAATTGGTCAAAGAAATGGATTGTCTTGAATACTTCA-AGGA-AC
* * * * * * * * *
23650197 -GAAGTTACAAAAGAACTCTTAAATGTTTGGC-ATGTTCAGAAGTTCATCCAAGAGCCAAGAGAG
1 AAAAGTTATAAAAGAACTCGTAAAAGTTTGACTA-GTTCATAAGTTCGTCCTAGA-ACAAGAGAG
* *
23650260 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACAGAATGACAAACT
64 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
** * * * *
23650325 ATTTAGA-CAAATGATGTTATTTCCCGAACTTAGAATGTTCGAAAAA-TGACTTAAAGGAATGGA
129 ATTTAGACCAAATGATGCGATTT-CCGAGCATGGAATGTTCGAAAAATTG-CTCAAAGGAATGGA
* * *
23650388 TAGTCTTGAATACTTTAAGCAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAA
192 TAGCCTTGAATACTTTAAGGAACAAAAGTTATAAATGAACTCGTAAAAGTTTGACTAGTTTGTAA
*
23650453 GTTCGTCCTAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
257 GTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * *** * *
23650518 GTTGTTTACAAAATTAAAAACTATTTAGAATGAATGATGCGATTTCCCGAGCATGGAATGTTCAA
322 GTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCCC-AGCATGGAATGTTCAA
* * * * *
23650583 AAATTGGTCGAAGAAATGGATCGTCTTTAATGCTCTCAA-AAAC
386 AAATTGGTCAAAGAAATGGATTGTCTTGAATACT-TCAAGGAAC
* * * * * * * *
23650626 AAAAGTTATAAAAGAACTTGTAAATGTTTGACAAG-TAAGGAGGTTTGTCCAAGAACCAAGAGAG
1 AAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCA-TAAGTTCGTCCTAGAA-CAAGAGAG
* ** * *
23650690 AAACAATTCTGACGTAAATAAGTTTTTAATAGAAAAACCAAAAGTTATTTACAAAATGACAAACT
64 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * **
23650755 ATTTAGACCAAATGATACGATTTCC-AGCTTGGAATGTTCGGGAAATTG-TGCAAAGGAATGGAT
129 ATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGAAAAATTGCT-CAAAGGAATGGAT
* * * * *
23650818 CGCCTTGAATACTTTAAGGAATC-GAAGTTATAAATGGACTCGTAATAGTTTGACTAGTTCGTAA
193 AGCCTTGAATACTTTAAGGAA-CAAAAGTTATAAATGAACTCGTAAAAGTTTGACTAGTTTGTAA
* *
23650882 GTTCGTCCGAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
257 GTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAA
* *
23650947 ATTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCCCTAGTATGGAATGTTCG
321 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCCC-AGCATGGAATGTTC-
* * * *
23651012 GAAAA-TGGCTCAAAGGAATGGATAGGCTTGAATACTTCAAGGAAC
384 AAAAATTGG-TCAAAGAAATGGATTGTCTTGAATACTTCAAGGAAC
* * *
23651057 AAAAGTTGTAAAACAACTCGTAAAAGTTTGACTAGTTCATAAGTTCGTCCTAGAACAA-AAAGAA
1 AAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCATAAGTTCGTCCTAGAACAAGAGAGAA
* * *
23651121 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACGAAATGACAAAGTTT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
*
23651186 TTAGACCGAATGAT
131 TTAGACCAAATGAT
23651200 ACTTATACAA
Statistics
Matches: 1197, Mismatches: 195, Indels: 75
0.82 0.13 0.05
Matches are distributed among these distances:
424 2 0.00
425 23 0.02
426 121 0.10
427 227 0.19
428 182 0.15
429 304 0.25
430 232 0.19
431 101 0.08
432 5 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (428 bp):
AAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCATAAGTTCGTCCTAGAACAAGAGAGAA
ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
TTAGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATAGC
CTTGAATACTTTAAGGAACAAAAGTTATAAATGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTC
GTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
TTTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCCCAGCATGGAATGTTCAAAAATT
GGTCAAAGAAATGGATTGTCTTGAATACTTCAAGGAAC
Found at i:23651880 original size:10 final size:10
Alignment explanation
Indices: 23651865--23651889 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23651855 TAAGGAGTTG
23651865 ATGGAGCTGA
1 ATGGAGCTGA
23651875 ATGGAGCTGA
1 ATGGAGCTGA
23651885 ATGGA
1 ATGGA
23651890 CTAGGCTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.08, G:0.40, T:0.20
Consensus pattern (10 bp):
ATGGAGCTGA
Found at i:23658804 original size:216 final size:215
Alignment explanation
Indices: 23658389--23661659 Score: 2991
Period size: 216 Copynumber: 15.3 Consensus size: 215
23658379 CATGTGTTCA
* * *
23658389 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAATTATTTAGA
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * *
23658454 CCAAATGATGTGATTTCCAAGCATGAAATGTTAGG-AAATTGCTC-AATGGAATGGATTGTCTTG
66 CCAAATGATGCGATTTCCGAGCATGGAATGTTCGGAAAATTGCTCGAA-GGAATAGATCGTCTTG
* * * *
23658517 AATACTTTAAAGAA-CTAGAGTTATGAACA-AACTCGTAAAAGTTTGACAAGTTCGAAAGCTCGA
130 AATACTTTAAGGAACCGA-AGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGA
*
23658580 CCAAGAACCAAGAGAGAAACAAT
193 CTAAGAACCAAGAGAGAAACAAT
* * * *
23658603 TCTCACATAAATAAGTTTTTGATTCAAAGACCAAAAGTTGTTTTCAAAATAAAAAACTATTTAGA
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * *
23658668 CCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGTTCGAAGAAATTGATCGTCTTG
66 CCAAATGATGCGATTTC-CGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATAGATCGTCTTG
*
23658733 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAGAGTTCGACT
130 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGACT
23658798 AAGAACCAAGAGAGAAACAAT
195 AAGAACCAAGAGAGAAACAAT
* ** * *
23658819 ACTCACATAAATAAGTTTTTAATTCAAAGATTAAAATTTGTTTACAAAATGACAAACTATTTAGG
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* ** *
23658884 CCAAATGATGCGATTTCCCGATCATGGAATGTTCATAAAATTGGTCGAAGGAATAGATCGTCTTG
66 CCAAATGATGCGATTT-CCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATAGATCGTCTTG
* * * * * * *
23658949 AATACTCTCAGGAGCGGAAGTTATAAAAGAACTCATAAATGTTTGACAAGTTCGAAAGTTC-ATT
130 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGACT
23659013 CAAGAACC-A-AGAG--A-AAT
195 -AAGAACCAAGAGAGAAACAAT
* * *
23659030 TCTCACGTAAATAAG---TT-ATT----------AATTTGTTTACAAAATGA-AAAATCA-TTAG
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT-ATTTAG
* * * * * * * *
23659079 ACCAAATTATGCAATTTCCCATGCATGGAATG-TCTAGAAAATTGCTCGAAGTAGTGGATCATCT
65 ACCAAATGATGCGATTTCCGA-GCATGGAATGTTC-GGAAAATTGCTCGAAGGAATAGATCGTCT
*** * * *
23659143 TGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCGTAAAAGTGTGAGAAGTTCGGAAGTTCGT
128 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCG-
* *
23659208 GC-AAGAA-GAAGAGAGAAACAAT
192 ACTAAGAACCAAGAGAGAAACAAT
* * * * * *
23659230 TCTCACGTAAATAAGTTTTTAATT-ATAAAACCAAAATTTGTTTACAAAATTAAAAATTATTTAG
1 TCTCACATAAATAAGTTTTTAATTCA-AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
* * * * * * *
23659294 ATCAAATGATGCGATTTTCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGCAATGGACCATCTT
65 ACCAAATGATGCGA-TTTCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATAGATCGTCTT
* * * * * * * * * * *
23659359 TAATACTGTAATGAACCGAATTTATAAATGATCTAGTAAAATTTTGACAAGTTTGGAAGTTCGTC
129 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGAC
* *
23659424 AAAGAGA--AAGAGAGAAACATT
194 TAAGA-ACCAAGAGAGAAACAAT
* * * * **
23659445 TCTTACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTATTTACAAAATGACAAACTATTTATC
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * * * *
23659510 CCAAATGATGCGATTTCCAAAGCATGAAATGTTCAGAAAATTACTTGAAGGAATGGATCGTATTA
66 CCAAATGATGCGATTTCC-GAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATAGATCGTCTTG
* * * * *
23659575 AATATTTTAAGGAATCGGAGTTATAAACA-AACTCATAAAAGTTTGACAAGTTCAAAAGTTCGAC
130 AATACTTTAAGGAACCGAAGTTATAAA-AGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGAC
*
23659639 CAAGAACCAAGAGAGAAACAAT
194 TAAGAACCAAGAGAGAAACAAT
** *
23659661 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA-AAACTACTTAGA
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* ** * *
23659725 CC-AATGATGCGATTTCCCGAGCATGGAATGTTC-GAAATTTTTTTTGAAGGAATGGATCGTCTT
66 CCAAATGATGCGATTT-CCGAGCATGGAATGTTCGGAAA-ATTGCTCGAAGGAATAGATCGTCTT
* *
23659788 GAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGAC
129 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGAC
* * *
23659853 CAAGAACCAAGAGAGAAATTATTGT
194 TAAGAACCAAGAGAGAAA-CA--AT
* * * * * ** *
23659878 TATTACGTAAATAAGTTTTCAATTCAATGACCAAAAGTTGTTTGTAAAATGACAAACTTTTTAGA
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * ** * * * *
23659943 CCAAATGATGTGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTAAAATGAATGGATCATTTTG
66 CCAAATGATGCGATTT-CCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATAGATCGTCTTG
* * * * * *
23660008 AATAC-TTAGAAGAACCAAAGTTACAAAAGAACTCGTAAAAGTTTGACAAGTT-AAGAAGTTAGG
130 AATACTTTA-AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGA
* * * *
23660071 CCATGGACCAAGAGAGAAATAAT
193 CTAAGAACCAAGAGAGAAACAAT
* * * *
23660094 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTGCAAAATGACATACTATTTAGA
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * *
23660159 CCAAATGATACGATTTCCCGAGCATGGAATGCTT-GGGAAATTGCTCGAAGGAATGGATCGTCTT
66 CCAAATGATGCGATTT-CCGAGCATGGAATG-TTCGGAAAATTGCTCGAAGGAATAGATCGTCTT
* ** * * *
23660223 AAATACTTTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTC
129 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGAC
* * *
23660288 AAAGAA-AAAGAGAGAAACACT
194 TAAGAACCAAGAGAGAAACAAT
* * * * *
23660309 TCTTACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATTACAAACTATTTAGA
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
** * * * ** * *
23660374 CCAAACAATACGATTTCCTAAGCATGAAATGTTCAAAAAATTGCTCGAAGGAGTGGATCGTCTTG
66 CCAAATGATGCGATTTCC-GAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATAGATCGTCTTG
* * * * ** * * * **
23660439 AATGCTTTGAGGGACAGAAGTTATAACTGAACTCGTAAAAGTTTGACAAGTTTGGAATTTCGAAA
130 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGACT
23660504 AAGAACCAAGAGAGAAACAAT
195 AAGAACCAAGAGAGAAACAAT
* * * * * *
23660525 TCTCACGTAAATAAGTTTTTAATTCAAATATCAAAAGTTGCTTA-AAAATGAAAAACTATTTATA
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* *
23660589 CCAAATGATGCGATTTCCCAAGCATGGAATGCTT-GGAAAATTGCTCGAAGGAATGGATCGTCTT
66 CCAAATGATGCGATTT-CCGAGCATGGAATG-TTCGGAAAATTGCTCGAAGGAATAGATCGTCTT
* * * * *
23660653 GAATACTTT-ATGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTT-AAGAAGTTAGG
129 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGA
* * *
23660716 CCAAGGAGCAAGAGAGAAACAAT
193 CTAAGAACCAAGAGAGAAACAAT
** * * * *
23660739 TCTCAGGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTCGTTTACAAAGTTGA-AAACCATTTAT
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA-ATGACAAACTA-TT-T
* ** * * * * *
23660803 AGACTC-AATGATGTC-ATTTCCTGAGAATGGAATGTTCATAAAATTGGTCGATGAAATGGATCA
63 AGAC-CAAATGATG-CGATTTCC-GAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATAGATCG
* * *** * * *
23660866 TCTTGAATACTCTCAGGAGTGGTAGTTATAAAAGTACTCGTAAATGTTTGACAAGTTCGAAAGTT
125 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTT
*
23660931 C-ATTCAAGAA-CAA-AGAG--A-AAT
190 CGACT-AAGAACCAAGAGAGAAACAAT
* * * * * *
23660952 TCTCACGTAAATATGTTATTAATTTAAAGGCAAAAAGTTGTTTACAAAAT-AGCAAACTATTTAG
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA-CAAACTATTTAG
* * ** * * * * *
23661016 ACCAAATTATGCGATTTCCCATGCAAAGAATGTTCGAAAAATTGCTCAAAGAAATGGATTGTCTT
65 ACCAAATGATGCGATTTCCGA-GCATGGAATGTTCGGAAAATTGCTCGAAGGAATAGATCGTCTT
* * ** * * *
23661081 GAATACTTTATGGAATCGAAGTTATAAAAGAACTTATAAAATTTTGACAAGTT-AAGAAGTTAG-
129 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGA
* * * *
23661144 GTCAAGGAGCAAGAGACAAACAAT
193 CT-AAGAACCAAGAGAGAAACAAT
* * * *
23661168 TCTCACGT--A-AAGTTTTTAATTCAAAGACGAAAAGTTGTTTACAAAGTGA-AAACCAATTTAG
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA-CTATTTAG
* ** * * * *
23661229 ACTC-AATGATGTGATTTCCCGAGCATGGAATGTTCATAAACTTGGTCGAAGGAATGGATCATCT
65 AC-CAAATGATGCGATTT-CCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATAGATCGTCT
* * * * *
23661293 TGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACATGTTCGAAAGTTCGT
128 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGA
23661358 CTAAGAACC-A-AGAG--A-AAT
193 CTAAGAACCAAGAGAGAAACAAT
* * * * * * * * *
23661376 TCGCACGTAAATAGGTTATTAGTTTAAAGACAAAAAGTTGTTTGCAAAATGGCAAACTATTTAGA
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * *
23661441 CCAAATTAGGCTATTTCCCGTGCATGGAATG-TCTGGAAAATTGCTCGAA-G----GATCGTTTT
66 CCAAATGATGCGATTT-CCGAGCATGGAATGTTC-GGAAAATTGCTCGAAGGAATAGATCGTCTT
* ** * * *
23661500 GAATACTTTAATGAATGGAAGTTATAAAAGAACTCATAAAAGCTTGACAAGTTC-AGAAGTTCGG
129 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGA
* * *
23661564 CCATGAACGAAGAGAGAAACAAT
193 CTAAGAACCAAGAGAGAAACAAT
* * *
23661587 TATCAC-TTAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGA
1 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
23661651 CCAAATGAT
66 CCAAATGAT
23661660 TGCTCAAAAT
Statistics
Matches: 2521, Mismatches: 433, Indels: 210
0.80 0.14 0.07
Matches are distributed among these distances:
195 5 0.00
196 112 0.04
197 23 0.01
199 1 0.00
200 18 0.01
203 2 0.00
204 3 0.00
205 1 0.00
206 65 0.03
207 4 0.00
208 16 0.01
209 1 0.00
210 66 0.03
211 205 0.08
212 14 0.01
213 196 0.08
214 334 0.13
215 575 0.23
216 581 0.23
217 116 0.05
218 63 0.02
219 117 0.05
220 3 0.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (215 bp):
TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
CCAAATGATGCGATTTCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATAGATCGTCTTGA
ATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGACTA
AGAACCAAGAGAGAAACAAT
Found at i:23659421 original size:215 final size:215
Alignment explanation
Indices: 23659053--23661659 Score: 2490
Period size: 215 Copynumber: 12.2 Consensus size: 215
23659043 AGTTATTAAT
* * * *
23659053 TTGTTTACAAAATGAAAAA-TCA-TTAGACCAAATTATGCAATTTCCCA-TGCATGGAATG-TCT
1 TTGTTTACAAAATGAAAAACT-ATTTAGACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCG
* * * ***
23659114 AGAAAATTGCTCGAAGTAGTGGATCATCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTC
64 A-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * *
23659179 GTAAAAGTGTGAGAAGTTCGGAAGTTCGTGCAAGAAGAAGAGAGAAACAATTCTCACGTAAATAA
128 GTAAAAGTTTGACAAGTTCGGAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACGTAAATAA
* *
23659244 GTTTTTAATT-ATAAAACCAAAAT
193 GTTTTTAATTCA-AAGACCAAAAG
* * * *
23659267 TTGTTTACAAAATTAAAAATTATTTAGATCAAATGATGCGATTTTCAGAGCATGGAATGTTCGAA
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAA
* * * * * * * * * *
23659332 AAATTGCTCGAAGCAATGGACCATCTTTAATACTGTAATGAACCGAATTTATAAATGATCTAGTA
66 AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
* * * *
23659397 AAATTTTGACAAGTTTGGAAGTTCGT-CAAAGAGA-AAGAGAGAAACATTTCTTACGTAAATAAG
131 AAAGTTTGACAAGTTCGGAAGTTCGTGC-AAGA-ACAAGAGAGAAACAATTCTCACGTAAATAAG
*
23659460 TTTTTAATTCAAAGACCAAAAT
194 TTTTTAATTCAAAGACCAAAAG
* * ** * *
23659482 TTATTTACAAAATGACAAACTATTTATCCCAAATGATGCGATTTCCAAAGCATGAAATGTTC-AG
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGA-
* * * * * * * *
23659546 AAAATTACTTGAAGGAATGGATCGTATTAAATATTTTAAGGAATCGGAGTTATAAACA-AACTCA
65 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA-AGAACTCG
** ** *
23659610 TAAAAGTTTGACAAGTTCAAAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAA
129 TAAAAGTTTGACAAGTTCGGAAGTTCGTGCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAA
23659675 GTTTTTAATTCAAAGACCAAAAG
193 GTTTTTAATTCAAAGACCAAAAG
* *
23659698 TTGTTTACAAAATG-AAAACTACTTAGACC-AATGATGCGATTTCCCGAGCATGGAATGTTCGAA
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAA
** ** * *
23659761 ATTTTTTTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTA
66 AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
** * * * *
23659826 AAAGTTTGACAAGTTCGGAAGTTCGACCAAGAACCAAGAGAGAAATTATTGTTATTACGTAAATA
131 AAAGTTTGACAAGTTCGGAAGTTCGTGCAAGAA-CAAGAGAGAAA-CA--ATTCTCACGTAAATA
* *
23659891 AGTTTTCAATTCAATGACCAAAAG
192 AGTTTTTAATTCAAAGACCAAAAG
** * * *
23659915 TTGTTTGTAAAATGACAAACTTTTTAGACCAAATGATGTGATTTCCCA-AGCATGGAATGTTCGA
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCGA
** * * * * * *
23659979 AAAATTGCTAAAATGAATGGATCATTTTGAATAC-TTAGAAGAACCAAAGTTACAAAAGAACTCG
65 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA-AGGAACCGAAGTTATAAAAGAACTCG
** * * * *
23660043 TAAAAGTTTGACAAGTTAAGAAGTTAG-GCCATGGACCAAGAGAGAAATAATTCTCACGTAAATA
129 TAAAAGTTTGACAAGTTCGGAAGTTCGTG-CA-AGAACAAGAGAGAAACAATTCTCACGTAAATA
*
23660107 AGTTTTTAATTCAAAGACCAAAAA
192 AGTTTTTAATTCAAAGACCAAAAG
* * * * * *
23660131 TTGTTTGCAAAATGACATACTATTTAGACCAAATGATACGATTTCCCGAGCATGGAATGCTT-GG
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATG-TTCGA
* * **
23660195 GAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACTAAAGTTATAAAAGAACTCGT
65 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * *
23660260 AAAAGTTTGACAAGTTTGGAAGTTCGT-CAAAGAAAAAGAGAGAAACACTTCTTACGTAAATAAG
130 AAAAGTTTGACAAGTTCGGAAGTTCGTGC-AAGAACAAGAGAGAAACAATTCTCACGTAAATAAG
* *
23660324 ATTTTAATTCAAAGACCAAAAC
194 TTTTTAATTCAAAGACCAAAAG
* * ** * * *
23660346 TTGTTTACAAAATTACAAACTATTTAGACCAAACAATACGATTTCCTA-AGCATGAAATGTTCAA
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCC-AGAGCATGGAATGTTCGA
* * * * * **
23660410 AAAATTGCTCGAAGGAGTGGATCGTCTTGAATGCTTTGAGGGACAGAAGTTATAACTGAACTCGT
65 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * ***
23660475 AAAAGTTTGACAAGTTTGGAATTTCGAAAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
130 AAAAGTTTGACAAGTTCGGAAGTTCGTGCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAG
* *
23660540 TTTTTAATTCAAATATCAAAAG
194 TTTTTAATTCAAAGACCAAAAG
* *
23660562 TTGCTTA-AAAATGAAAAACTATTTATACCAAATGATGCGATTTCCCA-AGCATGGAATGCTT-G
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTT-CCAGAGCATGGAATG-TTCG
* * *
23660624 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT-ATGAACCGAAGTTATAAAAGAACTCA
64 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
** * * * *
23660688 TAAAAGTTTGACAAGTTAAGAAGTTAG-GCCAAGGAGCAAGAGAGAAACAATTCTCAGGTAAAAA
129 TAAAAGTTTGACAAGTTCGGAAGTTCGTG-CAA-GAACAAGAGAGAAACAATTCTCACGTAAATA
23660752 AGTTTTTAATTCAAAGACCAAAAG
192 AGTTTTTAATTCAAAGACCAAAAG
* * * * *
23660776 TCGTTTACAAAGTTG-AAAACCATTTATAGACTC-AATGATGTC-ATTTCCTGAGAATGGAATGT
1 TTGTTTACAAA-ATGAAAAACTA-TT-TAGAC-CAAATGATG-CGATTTCCAGAGCATGGAATGT
* * * * * * *** * *
23660838 TC-ATAAAATTGGTCGATGAAATGGATCATCTTGAATACTCTCAGGAGTGGTAGTTATAAAAGTA
61 TCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
* * * *
23660902 CTCGTAAATGTTTGACAAGTTCGAAAGTTCATTCAAGAACAA-AGAG--A-AATTCTCACGTAAA
125 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACGTAAA
* * * * *
23660963 TATGTTATTAATTTAAAGGCAAAAAG
190 TAAGTTTTTAATTCAAAGACCAAAAG
* * * **
23660989 TTGTTTACAAAAT-AGCAAACTATTTAGACCAAATTATGCGATTTCCCA-TGCAAAGAATGTTCG
1 TTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCG
* * * * * **
23661052 AAAAATTGCTCAAAGAAATGGATTGTCTTGAATACTTTATGGAATCGAAGTTATAAAAGAACTTA
64 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* ** * * *
23661117 TAAAATTTTGACAAGTTAAGAAGTTAG-GTCAAGGAGCAAGAGACAAACAATTCTCACGT--A-A
129 TAAAAGTTTGACAAGTTCGGAAGTTCGTG-CAA-GAACAAGAGAGAAACAATTCTCACGTAAATA
*
23661178 AGTTTTTAATTCAAAGACGAAAAG
192 AGTTTTTAATTCAAAGACCAAAAG
* * * * *
23661202 TTGTTTACAAAGTGAAAACCAATTTAGACTC-AATGATGTGATTTCCCGAGCATGGAATGTTC-A
1 TTGTTTACAAAATGAAAAACTATTTAGAC-CAAATGATGCGATTTCCAGAGCATGGAATGTTCGA
* * * * *
23661265 TAAACTTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCG
65 -AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * * * * *
23661330 TAAATGTTTGACATGTTCGAAAGTTCGT-CTAAGAACCA-AGAG--A-AATTCGCACGTAAATAG
129 TAAAAGTTTGACAAGTTCGGAAGTTCGTGC-AAGAACAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
23661390 GTTATTAGTTTAAAGACAAAAAG
193 GTTTTTAATTCAAAGACCAAAAG
* ** * * * * * *
23661413 TTGTTTGCAAAATGGCAAACTATTTAGACCAAATTAGGCTATTTCCCGTGCATGGAATG-TCTGG
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTC-GA
* * ** *
23661477 AAAATTGCTC----GAA-GGATCGTTTTGAATACTTTAATGAATGGAAGTTATAAAAGAACTCAT
65 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * * *
23661537 AAAAGCTTGACAAGTTCAGAAGTTCG-GCCATGAACGAAGAGAGAAACAATTATCAC-TTAATAA
130 AAAAGTTTGACAAGTTCGGAAGTTCGTG-CAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAA
23661600 GTTTTTAATTCAAAGACCAAAAG
193 GTTTTTAATTCAAAGACCAAAAG
* *
23661623 TTGTTTAAAAAATGACAAACTATTTAGACCAAATGAT
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGAT
23661660 TGCTCAAAAT
Statistics
Matches: 1954, Mismatches: 361, Indels: 160
0.79 0.15 0.06
Matches are distributed among these distances:
206 65 0.03
207 5 0.00
208 14 0.01
209 1 0.00
210 63 0.03
211 182 0.09
212 19 0.01
213 191 0.10
214 252 0.13
215 567 0.29
216 303 0.16
217 112 0.06
218 62 0.03
219 114 0.06
220 4 0.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (215 bp):
TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAA
AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
AAAGTTTGACAAGTTCGGAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
TTTAATTCAAAGACCAAAAG
Found at i:23662024 original size:215 final size:215
Alignment explanation
Indices: 23661667--23666050 Score: 4056
Period size: 215 Copynumber: 20.5 Consensus size: 215
23661657 GATTGCTCAA
* * * *
23661667 AATGGATTGTCTTGAATAC-TTAGAAGAACCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAG
1 AATGGATCGTCTTGAATACTTTA-AGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * *
23661731 TTAAGAAGTTACG-CCAAGGACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA-A
65 TT-CGAAGTT-CGTGCAA-GAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATA
* * * *
23661794 AGA-CAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATTATGCAATTTCCCATGCATGG
127 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
*
23661858 AATGTTTGGAAAATTGCTCGAA-G
192 AATGTTCGGAAAATTGCTCGAAGG
* * * *
23661881 AACTGGATCATCTGGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTGTGAGAAG
1 AA-TGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* *
23661946 TTCGACAGTTCGTGCAAGAACAAGAGAGAATCAATTTTCACGTAAATAAGTTTTTAATT-ATAAG
65 TTCGA-AGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAAG
* * *
23662010 ACCAAAATTTGTTTACAAAATGACAAATTATTTAGATCAAATGATGCGATTT--C-AGCATGGAA
129 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
*
23662072 TGTTCGGAAAATTGCTTGAAGG
194 TGTTCGGAAAATTGCTCGAAGG
* *
23662094 AATGGATCGTCTTGAATAC-TTAGAAGAATCGAAGTTATAAAAGAACTCGTAGAAGTTTGACAAG
1 AATGGATCGTCTTGAATACTTTA-AGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * *
23662158 TTTGGAAGTTCGT-CAATGAACAAGAGAGAAACAACTCTTACGTAAATAAATTTTTAATTCA-AA
65 -TTCGAAGTTCGTGCAA-GAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAA
* * * * ** *
23662221 GACAAAAAGTTGTTTACAAAATGGCAAACTATGTAGACCAAATTATGAAATTTCCCATGCATGGA
128 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
*
23662286 ATG-TCTGGAAAATTGCTCGAAGT
193 ATGTTC-GGAAAATTGCTCGAAGG
* * * * * *
23662309 AGTGGATCATCTTGAATACGTTAAGGAATCGAAGATATAAAAGAACTCGTAAAAGTGTGAGAAGT
1 AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * *
23662374 TCGGAAGTTCATGCAAGAATAAGAGAGAAATAATTTTCACGTAAATAAGTTTTT-A---AT--GA
66 TC-GAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAAGA
** *
23662433 CCAAATTTTGTTTACAAAATGACAAA-TCATTTAGATCAAATGATGCGATTT-CCAGAGCATGGA
130 CCAAAAGTTGTTTACAAAATGACAAACT-ATTTAGACCAAATGATGCGATTTCCCA-AGCATGGA
* **
23662496 ATGTTCAGAAAATTGCTCGAAAA
193 ATGTTCGGAAAATTGCTCGAAGG
** * * * * *
23662519 AATGGATCGTCTTGAATACTTTAATAAACCGAAGGTATAAAAGAACTAGTAAAATTTTAACAAGT
1 AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * *
23662584 TTGAAAGTTC-TTCAAAGAACAAGAGAGAAACATTTCAT-ATGTAAATAAG-TTTTAATTCA-AA
66 TCG-AAGTTCGTGC-AAGAACAAGAGAGAAACAATTC-TCACGTAAATAAGTTTTTAATTCATAA
* * * *
23662645 GACCAAAAGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCAAACCATGAA
128 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
**
23662710 ATGTTTAGAAAATTGCTCGAAGG
193 ATGTTCGGAAAATTGCTCGAAGG
* * *
23662733 AATGGATCTTCTTGAATACTTTAAGGAA-CAAAAGTTATAAACA-AAGTCGTAAAAGTTTGACAA
1 AATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAA-AGAACTCGTAAAAGTTTGACAA
* * * * *
23662796 GATCGGAAGTT--TGACGAATAACTAAGAGAGAATCAATTCTAACTTAAATAAGTTTTTAATT-A
64 GTTC-GAAGTTCGTG-C-AAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * *
23662858 AAAGA-CAAAATGTAGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
125 TAAGACCAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCA
* *
23662922 TGGAATGTTC-AAAAATTGTTCGAAGG
189 TGGAATGTTCGGAAAATTGCTCGAAGG
* * * *
23662948 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTGTAAAAGAACTCGTAAAAGTTTTACATGT
1 AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
**
23663013 TCGGAAGTTCG-GCCAAGAACCAAGAGAGAAACAATAGTCACGTAAATAAGTTTTTAATTCA-AA
66 TC-GAAGTTCGTG-CAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAA
* * * * *
23663076 GACAAAAAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATGATGCGATTTCCCGATCATGTA
128 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
** * * **
23663141 ATGTTC---TCA-CG-T-AAATA
193 ATGTTCGGAAAATTGCTCGAAGG
*** ** ** * *** * * * * * ** * *
23663158 AATTTTTAAT-TCAAAAACCAAAAGTTATTTACAAAGTCA-AAAACTATTTAGACTCAAAGATTT
1 AATGGATCGTCTTGAATACTTTAAG-GA-AT-CGAAGTTATAAAA-GAACTCG--TAAAAG-TTT
* * * * ** ** ** **** *
23663221 GATTTCTCGAGCATGGAATGTTCATAAAATTGGTCTTGAACTCGATGATGTGATT-TCATGTAAA
59 GA-----CAAG-TTCGAA-GTTCGTGCAA--GAAC---AA-GAGA-GAAACAATTCTCACGTAAA
** * * *
23663285 TATTTTTTTAATTCA-AAGACTAAATGTTGTTTACAAAATGACATACTATTTAGACCAAATGATG
110 TAAGTTTTTAATTCATAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
**
23663349 CGATTTCCCAAGCATGGAATGTTCGGAAAATTGCTCGAAAA
175 CGATTTCCCAAGCATGGAATGTTCGGAAAATTGCTCGAAGG
* * *
23663390 AATGGATCGTCTTGAATACTTTAAGGAA-CGAAAGTTATAAAAGAACTCATACAAGTTTGACATG
1 AATGGATCGTCTTGAATACTTTAAGGAATCG-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * *
23663454 TTTTGAAGTTCGT-CAAAGAACAAGAGAGAAATAATTCTTACATAAATAAGTTTTTAATT-ATAA
65 -TTCGAAGTTCGTGC-AAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAA
* * * **
23663517 GACCAAAAGTTGTTTACAAAATGTCAAAATATTTAGACCAAATGATGCGATTACCTGAGCATGGA
128 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* *
23663582 ATGTTCGGAAAACTGCTCGAAGA
193 ATGTTCGGAAAATTGCTCGAAGG
* * * * * *
23663605 AATGGATTGTATTGAAAACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGT
1 AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * * *
23663670 TAAGAAGTTAG-GCCGAGGATCAAGAGAGAAACAATTCGCACGTAAATAAGTTTTTAATTCAT-A
66 T-CGAAGTTCGTG-C-AAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAA
* * * * *
23663733 GACCAAAAGTTATTTATAAAATGACAAACTATTTAGACCAAATGATGCCATTTCCCGAGCAAGGA
128 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
*
23663798 ATGCTCGGAAAATTGCTCGAAGG
193 ATGTTCGGAAAATTGCTCGAAGG
* * *
23663821 AATGGATCATCTTGAATACTTTAAGGAA-CAAAAGTTATAAAAGAACTCGTAAATGTTTGACAAG
1 AATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * * *
23663885 TTCGAAGTTCAT-CTAAGAACCA-AGAG--A-AATTCTCACATAAATGAGTTATTAATTTA-AAG
65 TTCGAAGTTCGTGC-AAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAAG
* * * ** * ***
23663944 ACAAAAAGTT-TTGTACAAAATGGA-AAACCATTTAGACCAAATTATTTGATTTGCTGTGCATGG
129 ACCAAAAGTTGTT-TACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
* *
23664007 AATGTTTGGAAAATTACTCGAAGG
192 AATGTTCGGAAAATTGCTCGAAGG
* * * * * *
23664031 ACTGGATCATCTAGAATACTTTAAGGAATCGAAGTTATAAAAGAACTAGTAAAAGTGTGAGAAGT
1 AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
**
23664096 TCAGAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCATATAAATAAGTTTTTAATT-ATAAGA
66 TC-GAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAAGA
* * *
23664160 CCAAAATTTGTTTACAAAATGACAAATTATTTAGATCAAATGATGCGATTT-CCAGAGCATGGAA
130 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCA-AGCATGGAA
**
23664224 TGTTCAAAAAATTGCTCGAAGG
194 TGTTCGGAAAATTGCTCGAAGG
* * * *
23664246 AATGGATCGT-TTGAATACTTTAATGAATCGAAGTTATAAAAGAACTAGTAAAATTTTAACAAGT
1 AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-
* * *
23664310 TTGGAAGTTCGT-CAAAGAACAAGAGAGAAACATTTCTTACGTAAATAAGTTTTTAATTCA-AAG
65 TTCGAAGTTCGTGC-AAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAAG
* * * * ** *
23664373 ACCAAAAGTTATTTACAAAATGACAAACTATTTAGCCCAAATAATACGATTTCTAAAGCATGAAA
129 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
* *
23664438 TGTTCGAAAAATTACTCGAAGG
194 TGTTCGGAAAATTGCTCGAAGG
** * * * *
23664460 AACAGATCGTCTTGAATGCTTTAAGGAACCGGAGTTATAAACA-AACTCATAAAAGTTTGACAAG
1 AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAA-AGAACTCGTAAAAGTTTGACAAG
* ** * * *
23664524 ATCGGAAGTTCGACCAAGAACCAAGTGAGAAACAATTCTCATGTAAATAAGTTTTTAATTTA-AA
65 TTC-GAAGTTCGTGCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAA
* * * * * *
23664588 GACCAAAAATTATTTACAAATTGA-AAACTATTTAGAGCAAATGATACGATTTCCCGAGCATGGA
128 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
23664652 ATGTTCGGAAAATTGCTCGAAGG
193 ATGTTCGGAAAATTGCTCGAAGG
* * * * * *
23664675 AATGGATCTTCTTGAATACTTTAAGGAA-CATAAGTTATAAATGAACTTGTGAAAGTTTGACTAG
1 AATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * *
23664739 TTCGGAAGTTCG-GCCATGAACCAAGAGAGAAATAATACTCACATAAATAAGTTTTTAATTCA-A
65 TTC-GAAGTTCGTG-CAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATA
* * * * * *
23664802 ATACCAAAAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATGATGCGATTTCTCGATCATGT
127 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
* * *
23664867 AATGTTCAGAAAATTGCTTGAATG
192 AATGTTCGGAAAATTGCTCGAAGG
* * * *
23664891 AATGGATCGTATTGAATAATTTAAGGAA-CCAACGTAATAAAAGAACTCGTAAAAGTTTGACAAG
1 AATGGATCGTCTTGAATACTTTAAGGAATCGAA-GTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * ** * ** *
23664955 TTAGTA-TTTTTGGCCGAGAACCAAGAGCTAAACAATTCTCACGTAAATAAGTTTTTAATTCA-G
65 TTCGAAGTTCGT-G-CAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATA
* * **
23665018 AGTCCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTACCTGAGCATGG
127 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
* *
23665083 GATGTTCGGAAAATTACTCGAAGG
192 AATGTTCGGAAAATTGCTCGAAGG
* * * * *
23665107 AATGGATTGTATTGAAAACTTTAAGGAACCAAAGTTAT-AAAGAACT--T----GTTTGACAAGT
1 AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* *
23665165 TAAGAAGTTAG-GTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA-A
66 T-CGAAGTTCGTG-C-AAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATA
* * *
23665228 AGACCAAAAGTTGTTTACAAAATGACAAACTATATAGACCAAATGATGCGATCTCCCAAGCAAGG
127 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
* **
23665293 ATTGTTCAAAAAATTGCTCGAAGG
192 AATGTTCGGAAAATTGCTCGAAGG
23665317 AATGGATCGTCTTGAATACTTTAAGGAA-CTGAAGTTATAAAAGAACTCGTAAATA-TTTGACAA
1 AATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCGTAAA-AGTTTGACAA
* * * * * * * *
23665380 GTTCAAAAGTTCATCCATA-AACCA-AGTG--A-AATTCTCACGTAAACAAGTTATTAATTTA-A
64 GTTC-GAAGTTCGTGCA-AGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATA
* * * * **
23665439 AGACAAAAAGTTGTTTACAAAATGGCAAACTATTTTGACCAAATTATGCGATTTCCCGCGCATGG
127 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
**
23665504 AATG-TCTGGAAAATTGCTTAAAGG
192 AATGTTC-GGAAAATTGCTCGAAGG
* * * * * * *
23665528 ACTGGATCATCTTGAATACTTTAAGGACTCAAAGGTATAAAAGAACTCGTAAAAGTGTGAGAAGT
1 AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * *
23665593 TCAAAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCATGTAAGTAAATTTTTAATT-ATAAGA
66 TC-GAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAAGA
* * * *
23665657 CCAAAATTTGTTCACAAAATGACAAATTATTTAGACCAAATGATGCGATTT-CCAGAGAATGGAA
130 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCA-AGCATGGAA
* * *
23665721 TGTTCGAAAAATTGTTCAAAGG
194 TGTTCGGAAAATTGCTCGAAGG
* * * * ** *
23665743 AATGGATCATCTTGAATACTTTAATGAACCGAAGTTATGAAAGAACTAATAAAATTTTGACAAGT
1 AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* *
23665808 TCAGAAGTTCGT-CAAAGAACAAGAGAGAAACATTTCTTACGTAAATAAGTTTTTAATT--TAAG
66 TC-GAAGTTCGTGC-AAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAAG
* * * ** *
23665870 AACCAAAAGTTGTTTA-AAAATGACTAACAATTTAGACCAAATGATGTGATTTTTC--G-A--GC
129 -ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
*
23665929 A---T-GG--AA-TGCTCGAAGA
193 ATGTTCGGAAAATTGCTCGAAGG
* * * *
23665945 AATGGATCGTC-TCAATTACTTTAAGGAACCAAAGTTATAAATGAACTCGTAAAAGTTTGACAAG
1 AATGGATCGTCTTGAA-TACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * *
23666009 TTCGGAAGTTTG-GCCATGAACCAAGAGTGAAACAATTCTCAC
65 TTC-GAAGTTCGTG-CAAGAA-CAAGAGAGAAACAATTCTCAC
23666051 TTAATTAGTT
Statistics
Matches: 3418, Mismatches: 598, Indels: 319
0.79 0.14 0.07
Matches are distributed among these distances:
201 3 0.00
202 72 0.02
203 21 0.01
205 1 0.00
206 1 0.00
209 38 0.01
210 474 0.14
211 215 0.06
212 188 0.06
213 21 0.01
214 445 0.13
215 1163 0.34
216 588 0.17
217 23 0.01
219 2 0.00
220 5 0.00
221 14 0.00
222 7 0.00
223 1 0.00
225 2 0.00
226 89 0.03
227 9 0.00
228 4 0.00
229 2 0.00
230 8 0.00
231 5 0.00
232 9 0.00
233 8 0.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.29
Consensus pattern (215 bp):
AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
TCGAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATAAGAC
CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATG
TTCGGAAAATTGCTCGAAGG
Found at i:23663225 original size:97 final size:97
Alignment explanation
Indices: 23663050--23663243 Score: 255
Period size: 97 Copynumber: 2.0 Consensus size: 97
23663040 GAAACAATAG
* * * * * *
23663050 TCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTAGGCC
1 TCACGTAAATAAATTTTTAATTCAAAAACAAAAAGTTATTTACAAAATCAAAAACTATTTAGACC
* *
23663115 AAATGATGCGATTTCCCGATCATGTAATGTTC
66 AAATGATGCGATTTCCCGAGCATGGAATGTTC
* *
23663147 TCACGTAAATAAATTTTTAATTCAAAAACCAAAAGTTATTTACAAAGTCAAAAACTATTTAGACT
1 TCACGTAAATAAATTTTTAATTCAAAAACAAAAAGTTATTTACAAAATCAAAAACTATTTAGAC-
** *
23663212 CAAA-GATTTGATTTCTCGAGCATGGAATGTTC
65 CAAATGATGCGATTTCCCGAGCATGGAATGTTC
23663244 ATAAAATTGG
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
97 79 0.95
98 4 0.05
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (97 bp):
TCACGTAAATAAATTTTTAATTCAAAAACAAAAAGTTATTTACAAAATCAAAAACTATTTAGACC
AAATGATGCGATTTCCCGAGCATGGAATGTTC
Found at i:23664339 original size:426 final size:428
Alignment explanation
Indices: 23661667--23666050 Score: 4219
Period size: 426 Copynumber: 10.2 Consensus size: 428
23661657 GATTGCTCAA
* * *
23661667 AATGGATTGTCTTGAATAC-TTAGAAGAACCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAG
1 AATGGATCGTCTTGAATACTTTA-AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
** * * * *
23661731 TTAAGAAGTTACGCCAAGGACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
65 TTTGGAAGTT-CGTCAAAGAACAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * *
23661796 A-CAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATTATGCAATTTCCCATGCATGGAA
128 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
* *
23661860 TGTTTGGAAAATTGCTCGAA-GAACTGGATCATCTGGAATACTTTAAGGAATCGAAGTTATAAAA
193 TGTTCGGAAAATTGCTCGAAGGAA-TGGATCATCTTGAATACTTTAAGGAA-CGAAGTTATAAAA
* * * *
23661924 GAACTCGTAAAAGTGTGAGAAGTTC-GACAGTTCGTGCAAGAACAAGAGAGAATCAATTTTCACG
256 GAACTCGTAAAAGTTTGACAAGTTCAGA-AGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACG
* *
23661988 TAAATAAGTTTTTAATTATAAGACCAAAATTTGTTTACAAAATGACAAATTATTTAGATCAAATG
320 TAAATAAGTTTTTAATTATAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATG
*
23662053 ATGCGATTT--C-AGCATGGAATGTTCGGAAAATTGCTTGAAGG
385 ATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
* * *
23662094 AATGGATCGTCTTGAATAC-TTAGAAGAATCGAAGTTATAAAAGAACTCGTAGAAGTTTGACAAG
1 AATGGATCGTCTTGAATACTTTA-AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * *
23662158 TTTGGAAGTTCGTCAATGAACAAGAGAGAAACAACTCTTACGTAAATAAATTTTTAATTCAAAGA
65 TTTGGAAGTTCGTCAAAGAACAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * ** *
23662223 CAAAAAGTTGTTTACAAAATGGCAAACTATGTAGACCAAATTATGAAATTTCCCATGCATGGAAT
129 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAAT
* * * *
23662288 G-TCTGGAAAATTGCTCGAAGTAGTGGATCATCTTGAATACGTTAAGGAATCGAAGATATAAAAG
194 GTTC-GGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA-CGAAGTTATAAAAG
* * * * * * *
23662352 AACTCGTAAAAGTGTGAGAAGTTCGGAAGTTCATGCAAGAATAAGAGAGAAATAATTTTCACGTA
257 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACGTA
* *
23662417 AATAAGTTTTT-A--AT--GACCAAATTTTGTTTACAAAATGACAAA-TCATTTAGATCAAATGA
322 AATAAGTTTTTAATTATAAGACCAAAATTTGTTTACAAAATGACAAACT-ATTTAGACCAAATGA
* * **
23662476 TGCGATTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAAA
386 TGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
** * * * *
23662519 AATGGATCGTCTTGAATACTTTAATAAACCGAAGGTATAAAAGAACTAGTAAAATTTTAACAAGT
1 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * *
23662584 TTGAAAGTTCTTCAAAGAACAAGAGAGAAACATTTCAT-ATGTAAATAAG-TTTTAATTCAAAGA
66 TTGGAAGTTCGTCAAAGAACAAGAGAG-AACAATTC-TCACGTAAATAAGTTTTTAATTCAAAGA
* * * *
23662647 CCAAAAGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCAAACCATGAAAT
129 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAAT
** * *
23662712 GTTTAGAAAATTGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACAAAAGTTATAAACA-
194 GTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC-GAAGTTATAAA-AG
* * * * * *
23662776 AAGTCGTAAAAGTTTGACAAGATCGGAAGTT--TGACGAATAACTAAGAGAGAATCAATTCTAAC
257 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTG-C-AAGAAC-AAGAGAGAAACAATTCTCAC
* * * *
23662839 TTAAATAAGTTTTTAATTAAAAGA-CAAAATGTAGTTTACAAAATGAAAAACTATTTAGACCAAA
319 GTAAATAAGTTTTTAATTATAAGACCAAAAT-TTGTTTACAAAATGACAAACTATTTAGACCAAA
* *
23662903 TGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGTTCGAAGG
383 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
* * *
23662948 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTGTAAAAGAACTCGTAAAAGTTTTACATGT
1 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * **
23663013 TCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATAGTCACGTAAATAAGTTTTTAATTCAAAGA
66 TTGGAAGTTCGTCAAAGAA-CAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * *
23663078 CAAAAAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATGATGCGATTTCCCGATCATGTAAT
129 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAAT
** * * ** *** * ** * *** * * * *
23663143 GTTC---TCA-CG-T-AAATAAATTTTTAAT-TCAAAAACCAAAAGTTATTTACAAAGTCAAAAA
194 GTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAG-GA---ACGAAGTTATAAA
* * * * ** *
23663201 CTATTTAGACTC--AAAGATTTGATTTCTCGAGCATGGAATGTTCATAAAATTGGT-CTTGAACT
255 --A--GA-ACTCGTAAA-A---G--TT-T-GA-C----AA-GTTCA-GAAGTTCGTGCAAGAACA
* * **** * ** *
23663263 CGA-TGATGTGATT-TCATGTAAATATTTTTTTAATTCA-AAGA-CTAAATGTTGTTTACAAAAT
300 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT-ATAAGACCAAAAT-TTGTTTACAAAAT
* * *
23663324 GACATACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGGAAAATTGCTCGAAA
363 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
*
23663389 A
428 G
* * *
23663390 AATGGATCGTCTTGAATACTTTAAGGAA-CGAAAGTTATAAAAGAACTCATACAAGTTTGACATG
1 AATGGATCGTCTTGAATACTTTAAGGAACCG-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * *
23663454 TTTTGAAGTTCGTCAAAGAACAAGAGAGAAATAATTCTTACATAAATAAGTTTTTAATT-ATAAG
65 TTTGGAAGTTCGTCAAAGAACAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTAATTCA-AAG
* * * **
23663518 ACCAAAAGTTGTTTACAAAATGTCAAAATATTTAGACCAAATGATGCGATTACCTGAGCATGGAA
128 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
* * ** * * *
23663583 TGTTCGGAAAACTGCTCGAAGAAATGGATTGTATTGAAAACTTTAAGGAACCAAAGTTATAAAAG
193 TGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA-CGAAGTTATAAAAG
* * * * * *
23663648 AACTTGTAAAAGTTTGACAAGTTAAGAAGTTAG-GCCGAGGATCAAGAGAGAAACAATTCGCACG
257 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTG-C-AAGAACAAGAGAGAAACAATTCTCACG
* * *
23663712 TAAATAAGTTTTTAATTCAT-AGACCAAAAGTTATTTATAAAATGACAAACTATTTAGACCAAAT
320 TAAATAAGTTTTTAATT-ATAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * *
23663776 GATGCCATTTCCCGAGCAAGGAATGCTCGGAAAATTGCTCGAAGG
384 GATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
* ** *
23663821 AATGGATCATCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAATGTTTGACAAG-
1 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * * * * * * *
23663885 TTCGAAGTTCATCTAAGAACCA-AGAG-A-AATTCTCACATAAATGAGTTATTAATTTAAAGACA
66 TTGGAAGTTCGTCAAAGAACAAGAGAGAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * ** * ***
23663947 AAAAGTT-TTGTACAAAATGGA-AAACCATTTAGACCAAATTATTTGATTTGCTGTGCATGGAAT
131 AAAAGTTGTT-TACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAAT
* * * *
23664010 GTTTGGAAAATTACTCGAAGGACTGGATCATCTAGAATACTTTAAGGAATCGAAGTTATAAAAGA
194 GTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA-CGAAGTTATAAAAGA
* * * **
23664075 ACTAGTAAAAGTGTGAGAAGTTCAGAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCATATAA
258 ACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACGTAA
* *
23664140 ATAAGTTTTTAATTATAAGACCAAAATTTGTTTACAAAATGACAAATTATTTAGATCAAATGATG
323 ATAAGTTTTTAATTATAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* **
23664205 CGATTTCCAGAGCATGGAATGTTCAAAAAATTGCTCGAAGG
388 CGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
* * * * *
23664246 AATGGATCGT-TTGAATACTTTAATGAATCGAAGTTATAAAAGAACTAGTAAAATTTTAACAAGT
1 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* *
23664310 TTGGAAGTTCGTCAAAGAACAAGAGAGAAACATTTCTTACGTAAATAAGTTTTTAATTCAAAGAC
66 TTGGAAGTTCGTCAAAGAACAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * ** *
23664375 CAAAAGTTATTTACAAAATGACAAACTATTTAGCCCAAATAATACGATTTCTAAAGCATGAAATG
130 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATG
* * ** * * *
23664440 TTCGAAAAATTACTCGAAGGAACAGATCGTCTTGAATGCTTTAAGGAACCGGAGTTATAAACA-A
195 TTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA-CGAAGTTATAAA-AGA
* * * ** * *
23664504 ACTCATAAAAGTTTGACAAGATCGGAAGTTCGACCAAGAACCAAGTGAGAAACAATTCTCATGTA
258 ACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTGCAAGAA-CAAGAGAGAAACAATTCTCACGTA
* * * *
23664569 AATAAGTTTTTAATT-TAAAGACCAAAAATTATTTACAAATTGA-AAACTATTTAGAGCAAATGA
322 AATAAGTTTTTAATTAT-AAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
*
23664632 TACGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
386 TGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
* ** * * * *
23664675 AATGGATCTTCTTGAATACTTTAAGGAACATAAGTTATAAATGAACTTGTGAAAGTTTGACTAGT
1 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * * * * * *
23664740 TCGGAAGTTCGGCCATGAACCAAGAGAGAAATAATACTCACATAAATAAGTTTTTAATTCAAATA
66 TTGGAAGTTCGTCAAAGAA-CAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * *
23664805 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATGATGCGATTTCTCGATCATGTAAT
129 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAAT
* * * * * * * *
23664870 GTTCAGAAAATTGCTTGAATGAATGGATCGTATTGAATAATTTAAGGAACCAACGTAATAAAAGA
194 GTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACGAA-GTTATAAAAGA
* ** * **
23664935 ACTCGTAAAAGTTTGACAAGTT-AGTA-TTTTTGGCCGAGAACCAAGAGCTAAACAATTCTCACG
258 ACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGT-G-CAAGAA-CAAGAGAGAAACAATTCTCACG
* * *
23664998 TAAATAAGTTTTTAATTCA-GAGTCCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
320 TAAATAAGTTTTTAATT-ATAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * *
23665062 GATGCGATTACCTGAGCATGGGATGTTCGGAAAATTACTCGAAGG
384 GATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
* * * *
23665107 AATGGATTGTATTGAAAACTTTAAGGAACCAAAGTTAT-AAAGAACT--T----GTTTGACAAGT
1 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
** * *
23665165 TAAGAAGTTAGGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
66 TTGGAAGTT-CGTCAAAGAA-CAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * *
23665230 ACCAAAAGTTGTTTACAAAATGACAAACTATATAGACCAAATGATGCGATCTCCCAAGCAAGGAT
128 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
** *
23665295 TGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAG
193 TGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC-GAAGTTATAAAAG
* * * * *
23665360 AACTCGTAAATA-TTTGACAAGTTCAAAAGTTCATCCATA-AACCA-AGTG--A-AATTCTCACG
257 AACTCGTAAA-AGTTTGACAAGTTCAGAAGTTCGTGCA-AGAACAAGAGAGAAACAATTCTCACG
* * * * * *
23665419 TAAACAAGTTATTAATT-TAAAGACAAAAAGTTGTTTACAAAATGGCAAACTATTTTGACCAAAT
320 TAAATAAGTTTTTAATTAT-AAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * **
23665483 TATGCGATTTCCCGCGCATGGAATG-TCTGGAAAATTGCTTAAAGG
384 GATGCGATTTCCCGAGCATGGAATGTTC-GGAAAATTGCTCGAAGG
* * * * * *
23665528 ACTGGATCATCTTGAATACTTTAAGG-ACTCAAAGGTATAAAAGAACTCGTAAAAGTGTGAGAAG
1 AATGGATCGTCTTGAATACTTTAAGGAAC-CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
*** * * *
23665592 TTCAAAAGTTCGTGC-AAGAACAAGAGAGAAACAATTCTCATGTAAGTAAATTTTTAATT-ATAA
65 TTTGGAAGTTCGT-CAAAGAACAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTAATTCA-AA
* * * *
23665655 GACCAAAATTTGTTCACAAAATGACAAATTATTTAGACCAAATGATGCGATTT-CCAGAGAATGG
127 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCA-AGCATGG
* * * * *
23665719 AATGTTCGAAAAATTGTTCAAAGGAATGGATCATCTTGAATACTTTAATGAACCGAAGTTATGAA
191 AATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA-CGAAGTTATAAA
** * * *
23665784 AGAACTAATAAAATTTTGACAAGTTCAGAAGTTCGT-CAAAGAACAAGAGAGAAACATTTCTTAC
255 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTGC-AAGAACAAGAGAGAAACAATTCTCAC
* * *
23665848 GTAAATAAGTTTTTAATT-TAAGAACCAAAAGTTGTTTA-AAAATGACTAACAATTTAGACCAAA
319 GTAAATAAGTTTTTAATTATAAG-ACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAA
* ** *
23665911 TGATGTGATTTTTCGAGC-----A---T-GG--AA-TGCTCGAAGA
383 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
* * *
23665945 AATGGATCGTC-TCAATTACTTTAAGGAACCAAAGTTATAAATGAACTCGTAAAAGTTTGACAAG
1 AATGGATCGTCTTGAA-TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * * *
23666009 TTCGGAAGTTTGGCCATGAACCAAGAGTGAAACAATTCTCAC
65 TTTGGAAGTTCGTCAAAGAA-CAAGAGAG-AACAATTCTCAC
23666051 TTAATTAGTT
Statistics
Matches: 3286, Mismatches: 540, Indels: 271
0.80 0.13 0.07
Matches are distributed among these distances:
416 4 0.00
417 70 0.02
418 23 0.01
420 6 0.00
421 129 0.04
422 62 0.02
423 2 0.00
424 210 0.06
425 331 0.10
426 583 0.18
427 286 0.09
428 36 0.01
429 367 0.11
430 273 0.08
431 459 0.14
432 96 0.03
433 1 0.00
434 3 0.00
435 1 0.00
436 4 0.00
437 1 0.00
438 3 0.00
439 1 0.00
440 4 0.00
441 188 0.06
442 94 0.03
443 5 0.00
444 8 0.00
445 16 0.00
446 1 0.00
447 10 0.00
448 9 0.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.29
Consensus pattern (428 bp):
AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
TTGGAAGTTCGTCAAAGAACAAGAGAGAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGT
TCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACGAAGTTATAAAAGAACT
CGTAAAAGTTTGACAAGTTCAGAAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTTAATTATAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
TTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
Found at i:23666521 original size:216 final size:216
Alignment explanation
Indices: 23666060--23670221 Score: 3740
Period size: 216 Copynumber: 19.4 Consensus size: 216
23666050 CTTAATTAGT
* * * * * * * **
23666060 TTTCC-GAGCATGGAAAGTTCAAAAAATTTCTCAAATGAATGGATCGTCTAGAATACTTAAAATA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * * * *
23666124 ATCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTAAAAAGTTAGGCCAAGGACCAAGAGA
66 ACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGAGA
* * ** * * *
23666189 GAAACAATTCTCACGTACAGAAGTTTTTAATTCAAAGAAAAAAAGATGTTTACAAAATGATATAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
23666254 TATTTAGACCAAATGATGCGA
196 TATTTAGACCAAATGATGCGA
* * *
23666275 TTTCCTGAGCATGGAATGTT-TGCAAAATTGCTCGAAGGAAT-GACTCATCTTGAATACTTTAAG
1 TTTCCAGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGA-TCGTCTTGAATACTTTAAG
* * * * *
23666338 CAACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGGAGC-A-A
64 GAACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGA
* ** * * * *
23666401 GAGAAATAATTCTCGTGTAAA-AATTTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATCACA
129 GAGAAACAATTCTCACGTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAA
* *
23666465 AACTACTTAGACCAAATGATGCGT
193 AACTATTTAGACCAAATGATGCGA
* * * * * *
23666489 TTTCCAAAAAGCATGAAATGTTCAGCAAATTGCTCGAAGGATTCGATTGTCTTGAATACTTTAAG
1 TTTCC--AGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * *
23666554 GAACCGAGGTTAT-AAACAAACTCGTAAAA-TTTTACAAGATCAA-AAATTCGACCAAGAACCAA
64 GAACCGAAGTTATAAAAC-AACTCGTAAAAGTTTGACAAG-TTAAGAAGTTCGACCAAGAACCAA
*
23666616 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGAA
127 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAA
* *
23666681 AAATTATTTAGACCAAATGATGTGA
192 AAACTATTTAGACCAAATGATGCGA
* * *
23666706 TTTCCAAAGCATGAAATGTTC-GAAAAATTGCTCGATGGAATGGATCGTCTTGAATACTTTAAGG
1 TTTCCAGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * ** *
23666770 AACCAAAGTTA-CAAACAAACTCGTAAAAGTTTGACAAGTTTGGAAGCTCGACCAAGAACCAAGA
65 AACCGAAGTTATAAAAC-AACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGA
* *
23666834 GAGAAACAATTCTCACGTAAATAAGTTTTTGATTCAAAGACCAAAAGTTGTTTACAAAATAAAAA
129 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
23666899 ACTATTTAGACCAAATGATGCGA
194 ACTATTTAGACCAAATGATGCGA
* *
23666922 TTTCCAGAGCATGGAATGTTCAGAAAATTGTTCGAAGAAATGGATCGTCTTGAATACTTTAAGGA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * *
23666987 ACCGAAGTTATAAAAGAACTCGTAAAAGTGTGACAAGTTCAGGAGTTCGACTAAGAACCAAGAGA
66 ACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGAGA
* * * * ** * *
23667052 GAAACAATACTGATGTAAATAAGTTTTCAATTCAAAGATTAAAATTTGTTTACAAAATGACAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
*
23667117 TATTTAGGCCAAATGATGCGA
196 TATTTAGACCAAATGATGCGA
** * * *
23667138 TTTCTC-GATTATGGAATGTTCATAAAATTGGTCGAAGGAATAGATC-TCTTGAATACTCTT-AG
1 TTTC-CAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT-TTAAG
* * * * *
23667200 G-AGCGAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTT-CGAAAGTTC-ATTCAAGAACC-
64 GAACCG-AAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAG-AAGTTCGA-CCAAGAACCA
* *
23667261 A-AGAG--A-AATTCTCACGTAAATAAG---TT-ATT----------AATTTGTTTACAAATTGA
126 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* *
23667308 AAAATTATTTAGATCAAATGATGCGA
191 AAAACTATTTAGACCAAATGATGCGA
* * * * *
23667334 TTTCTAGAGCATGGAATG-TCTGGAAATTGCTCGAAGGACTGGATCATCTTGAATACTTTAAGGA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** * * ** * * ** **
23667398 GTCGAAGTTATAAAAGAACTCATAAAAGTGCGAGATGTTCTGAAGTTCGTGCAAGAA-CAAGAGA
66 ACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGAGA
* * * *
23667462 GAAACAATTCTCACCTAAATAAGTTTTTAATT-ATAAAACCAAAATTTTTTTACAAAATGAAAAA
131 GAAACAATTCTCACGTAAATAAGTTTTTAATTCA-AAGACCAAAAGTTGTTTACAAAATGAAAAA
* * * *
23667526 TTATTTAGATCAAATAATGTGA
195 CTATTTAGACCAAATGATGCGA
* ** * * * *
23667548 TTTTCAGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGACCATCTTGAATACTGTAATGA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* ** * * * ** * *
23667613 ACCGAATTTATAAATGATCTAGTAAAATTTTGACAAGTTTGGAAGTTCGTCAAAGAA-CAAGAGA
66 ACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGAGA
* * * *
23667677 GAAACATTTCTTACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
*
23667742 TATTTAGACCAAATGATGCAA
196 TATTTAGACCAAATGATGCGA
* * * * * *
23667763 TTTCCAAACCATGAAATGTTC-GAAAAATTGCTCGAAGTAATGGATCATCTTTAATACTTTAAGG
1 TTTCCAGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
23667827 AACCGGAGTTAT-AAACAAACTCGTAAAAGTTTGACAAGATCAGAAGTTCGACCAAGAACCAAGA
65 AACCGAAGTTATAAAAC-AACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGA
* * * * *
23667891 GAGAATCAGTTCTCATGTAAATAAGTTTTTAATTTAAAGACCAAAAGTAGTTTACAAAATGAAAA
129 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
* *
23667956 GCTATTTAGACCAAATGATGCAA
194 ACTATTTAGACCAAATGATGCGA
** * * * * * * *
23667979 TTTCTTGAGAAGGGTATGTTCGGAAAATTGTTCGAAAGAATGGATCATCTTGAATACTTTAAGGA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * *
23668044 ACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACATA-TT-CGAAAGATCGGCCAAGAACCAAGA
66 ACCGAAGTTATAAAACAACTCGTAAAAGTTTGACA-AGTTAAG-AAGTTCGACCAAGAACCAAGA
** * * *
23668107 GAGAAACAATAGTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAGATGACAA
129 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
* * *
23668172 AGTATTTAGGCCAAATGCTGCGA
194 ACTATTTAGACCAAATGATGCGA
* * * * * * ** ** * **
23668195 TTTCCTGATCATGTAATGTTCTCACATAAATAAGTTTTTAATTCAA-AGA-C--C-AAAAGTTA-
1 TTTCCAGAGCATGGAATG-T-TCAGA-AAAT-TG-CTCGAA-GGAATGGATCGTCTTGAA--TAC
** * * ** * ***
23668254 TTTACA--AAGTCAAAAACTATTTAGACTCAA-T-GATTTGATTTTTTGAGCACGGAATGTTTTT
58 TTTA-AGGAA--C-CGAAGT-TATA-AAACAACTCG---TAAAAGTTT--G-AC--AA-G---TT
* * ** * **** * *
23668315 AA-AA-TTTG-TCTTGAACTC--GA-TGATGTGA-TATCACGTAAATATA-TTTTTAATTTAAAG
105 AAGAAGTTCGACCAAGAAC-CAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAG
* * * * *
23668372 AGCAAATGTTGTTTACAAAATGACATACTATTTAGACCAAATGATGCAA
168 ACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * *
23668421 TTTCCCGAGCATGGAATGTTCGGAAAATTGCTAGAAGAAATGGATCGTCTTGAATACTTTAAGGA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * ** * *
23668486 A-CGAAAGTTATAAAATAACTCGTAAAAGTTTGACATGTTTTGAAGTTCGTCAAAGAA-CAAGAG
66 ACCG-AAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGAG
* * * * *
23668549 AGAAATAATTCTTACGTAAATAAGTTTTTAATTCAAAGATCAAAAGTTATTTACAAAATGACAAA
130 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
23668614 CTATTTAGACCAAATGATGCGA
195 CTATTTAGACCAAATGATGCGA
* * * * * * *
23668636 TTTCCAAAGCATGAAATGTTCGGAAAATTGCTAGAAGGAATGAATCGTTTTAAATACTTTAAGGA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * **
23668701 ACCTG-AGTTAT-AAACAAACTCGTAAAAGTTTAACAAGATCGGAAGTTCGACCAAGAACCAAGA
66 ACC-GAAGTTATAAAAC-AACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGA
*
23668764 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTGCAAAATGAAAA
129 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
23668829 ACTATTTAGACCAAATGATGCGA
194 ACTATTTAGACCAAATGATGCGA
* * * * * *
23668852 TTTCCCGAGCATGGAATGCTCGGAAAATTGTTCGAAGGAATGGAACGTCTTGAATACTGTAAGGA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* ** * * * * *
23668917 ACCGAAGATATAAAAGTACTTGTAAAAGTTTGACAAGTTCTA-ATGTTTGGCCAAGAACCAAGAG
66 ACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTT-AAGAAGTTCGACCAAGAACCAAGAG
* * * *
23668981 AGAAACAATACTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAAAATGACAAA
130 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
*
23669046 CTATTTAGGCCAAATGATGCGA
195 CTATTTAGACCAAATGATGCGA
* * * * * *
23669068 TTTCTC-GATCATGTAATATTCAAAAAATTGCTCGAATGAATGGATCGTATTGAATACTTTAAGG
1 TTTC-CAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * ** * * *
23669132 AACCGAAGTAATAAAAGAACTCATAAAAGTTTGACAAGTTCAGATTTTTGGCCAGGAACCAAGAG
65 AACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGAG
* * * * * * *
23669197 ATAAACAATTATCACATAAATAAGTTCTTAATTCAAAGTCCAAAAGTTCTTTACAAAAAGAAAAA
130 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
23669262 CTATTTAGACCAAATGATGCGA
195 CTATTTAGACCAAATGATGCGA
* *
23669284 TTTCCTAG-GCAAGGATTGTTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
1 TTTCC-AGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * ** * * *
23669347 GAACCGAAGTTATAAAAGAACTCGTAAATGTTTGATACGTTCGGAAGTTTGTCCATGAACC-A-A
64 GAACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGA
* * * **
23669410 GAG--A-AATTCTCACGTAAATAAGTTATTAATTTAAAGACAAAAAGTTGTTTACAAAATGGCAA
129 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
* * *
23669472 ACTATTTAGACCAAATTATACAA
194 ACTATTTAGACCAAATGATGCGA
* * * * *
23669495 TTTCCCGTGCATGGAATG-TCTGGAAAATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGG
1 TTTCCAGAGCATGGAATGTTC-AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * ** * * **
23669559 AATCAAAGTTATAAATGAAGTCGTAAAAG--T-----G-TGAGAAGTTCGTGCAAGAA-CAAGAG
65 AACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGAG
* * * *
23669615 AGAAACGATTCTCACGTAAATAAGTTTTTAATT-ATTAGACCAAAATTTGTTTACAAAATGACAA
130 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCA-AAGACCAAAAGTTGTTTACAAAATGAAAA
* *
23669679 ATTATTTAGATCAAATGATGCGA
194 ACTATTTAGACCAAATGATGCGA
* *
23669702 TTTCCAGAGCATGGAATGTTC-GAAAACTTGCTTGAAGGAATGGATCGTCTTGAATACTTTAATG
1 TTTCCAGAGCATGGAATGTTCAGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * ** * * * * **
23669766 AACCGAAGTTGTGAAAGAACTAATAAAATTTTGACAAGTTCAGAAGTTCG-TCAAAAAATAAGAG
65 AACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGAG
* * * * * **
23669830 AGAAACATTTCTTACGTACATAAGTTTTTAATTTAAAAACCAAAAGTTGTTTACAAAATGACTAA
130 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
* * * *
23669895 CAACTTAGATCAAATGATGTGA
195 CTATTTAGACCAAATGATGCGA
* * * *
23669917 TTTCTC-GAGCATGGAATGCTC-GAAAAATTGCTCGATGGAATGGATCGTCTTGATTAATTTAAG
1 TTTC-CAGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * *
23669980 GAACCAAAGTTATAAAAAAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCATGAACCAAGA
64 GAACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGA
* * * * *
23670045 GAGAAACAATTCTCAC-TTAATAAGTTCTTAATGCAAAAACCAAAAGTTGTTTACAAAATGATAA
129 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
* *
23670109 ACTATTTAGACCATATGATGAGA
194 ACTATTTAGACCAAATGATGCGA
* * * ** * * * * *
23670132 TTTCCCG-CCTATGGAAAGTTTGGAAAATTTCTCAAATGAATGGATCATCTTGAATAC-TTAGAA
1 TTTCCAGAGC-ATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA-AG
* * *
23670195 GAATCGAAGTTGTAAAAGAACTCGTAA
64 GAACCGAAGTTATAAAACAACTCGTAA
23670222 TATTTCTCTT
Statistics
Matches: 3241, Mismatches: 559, Indels: 294
0.79 0.14 0.07
Matches are distributed among these distances:
195 24 0.01
196 109 0.03
197 7 0.00
199 1 0.00
200 17 0.01
202 1 0.00
203 17 0.01
204 8 0.00
206 10 0.00
207 138 0.04
208 2 0.00
209 2 0.00
210 20 0.01
211 148 0.05
212 5 0.00
213 12 0.00
214 166 0.05
215 900 0.28
216 1358 0.42
217 104 0.03
218 10 0.00
219 13 0.00
220 12 0.00
221 19 0.01
222 11 0.00
223 12 0.00
224 8 0.00
225 6 0.00
226 81 0.02
227 5 0.00
228 3 0.00
229 5 0.00
230 3 0.00
231 2 0.00
232 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
ACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCGACCAAGAACCAAGAGA
GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
TATTTAGACCAAATGATGCGA
Found at i:23666983 original size:431 final size:431
Alignment explanation
Indices: 23666060--23670221 Score: 4032
Period size: 431 Copynumber: 9.7 Consensus size: 431
23666050 CTTAATTAGT
* * * * * * * **
23666060 TTTCC-GAGCATGGAAAGTTCAAAAAATTTCTCAAATGAATGGATCGTCTAGAATACTTAAAATA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * * * *
23666124 ATCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTAAAAAGTTAGGCCAAGGACCAAGAGA
66 ACCGAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGAGA
* * ** * * *
23666189 GAAACAATTCTCACGTACAGAAGTTTTTAATTCAAAGAAAAAAAGATGTTTACAAAATGATATAC
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
* * *
23666254 TATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTTGCAAAATTGCTCGAAGGAAT-GA
195 TATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * **
23666318 CTCATCTTGAATACTTTAAGCAACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTAAGA
260 -TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * * * ** *
23666383 AGTTAGGCCAAGGAGC-A-AGAGAAATAATTCTCGTGTAAA-AATTTTTTTAATTCAAAGACCAA
324 AGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA-GTTTTTAATTCAAAGACCAA
* * * *
23666445 AAGTTGTTTAGAAAATCACAAACTACTTAGACCAAATGATGCGT
388 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * * *
23666489 TTTCCAAAAAGCATGAAATGTTCAGCAAATTGCTCGAAGGATTCGATTGTCTTGAATACTTTAAG
1 TTTCC--AGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * *
23666554 GAACCGAGGTTATAAACAAACTCGTAAAA-TTTTACAAGATCAAAAATTCGACCAAGAACCAAGA
64 GAACCGAAGTTATAAA-AAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGA
*
23666618 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGAAAA
128 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
* * * * *
23666683 ATTATTTAGACCAAATGATGTGATTTCCAAAGCATGAAATGTTCGAAAAATTGCTCGATGGAATG
193 ACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * *
23666748 GATCGTCTTGAATACTTTAAGGAACCAAAGTTACAAACA-AACTCGTAAAAGTTTGACAAGTTTG
258 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA-AGAACTCGTAAAAGTTTGACAAGTTCG
* * *
23666812 GAAGCTCGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGATTCAAAGACCA
322 GAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* *
23666877 AAAGTTGTTTACAAAATAAAAAACTATTTAGACCAAATGATGCGA
387 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
23666922 TTTCCAGAGCATGGAATGTTCAGAAAATTGTTCGAAGAAATGGATCGTCTTGAATACTTTAAGGA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * *
23666987 ACCGAAGTTATAAAAGAACTCGTAAAAGTGTGACAAGTTCAGGAGTTCGACTAAGAACCAAGAGA
66 ACCGAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGAGA
* * * * ** * *
23667052 GAAACAATACTGATGTAAATAAGTTTTCAATTCAAAGATTAAAATTTGTTTACAAAATGACAAAC
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
* ** * *
23667117 TATTTAGGCCAAATGATGCGATTTCTC-GATTATGGAATGTTC-ATAAAATTGGTCGAAGGAATA
195 TATTTAGACCAAATGATGCGATTTC-CAGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATG
* *
23667180 GATC-TCTTGAATACTCTT-AGG-AGCGAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTC
258 GATCGTCTTGAATACT-TTAAGGAACCG-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* ***
23667242 GAAAGTTCATTCAAGAACC-A-AGAG--A-AATTCTCACGTAAATAAG---TT-ATT--------
321 GGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * *
23667290 --AATTTGTTTACAAATTGAAAAATTATTTAGATCAAATGATGCGA
386 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * *
23667334 TTTCTAGAGCATGGAATG-TCTGGAAATTGCTCGAAGGACTGGATCATCTTGAATACTTTAAGGA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** * ** * * * **
23667398 GTCGAAGTTATAAAAGAACTCATAAAAGTGCGAGATGTTCTGAAGTTCGTGCAAGAA-CAAGAGA
66 ACCGAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGAGA
* * * *
23667462 GAAACAATTCTCACCTAAATAAGTTTTTAATT-ATAAAACCAAAATTTTTTTACAAAATGAAAAA
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCA-AAGACCAAAAGTTGTTTACAAAATGAAAAA
* * * * * * *
23667526 TTATTTAGATCAAATAATGTGATTTTCAGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGG
194 CTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * * * * * * * * *
23667591 ACCATCTTGAATACTGTAATGAACCGAATTTATAAATGATCTAGTAAAATTTTGACAAGTTTGGA
259 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * * *
23667656 AGTTCGTCAAAGAA-CAAGAGAGAAACATTTCTTACGTAAATAAGTTTTTAATTCAAAGACCAAA
324 AGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* *
23667720 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCAA
389 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * * *
23667763 TTTCCAAACCATGAAATGTTC-GAAAAATTGCTCGAAGTAATGGATCATCTTTAATACTTTAAGG
1 TTTCCAGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* *
23667827 AACCGGAGTTATAAACAAACTCGTAAAAGTTTGACAAGATCAGAAGTTCGACCAAGAACCAAGAG
65 AACCGAAGTTATAAA-AAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGAG
* * * * * *
23667892 AGAATCAGTTCTCATGTAAATAAGTTTTTAATTTAAAGACCAAAAGTAGTTTACAAAATGAAAAG
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
* ** * * * * * *
23667957 CTATTTAGACCAAATGATGCAATTTCTTGAGAAGGGTATGTTCGGAAAATTGTTCGAAAGAATGG
194 CTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * *
23668022 ATCATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACATA-TTCGA
259 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA-AGTTCGG
* ** *
23668086 AAGATCGGCCAAGAACCAAGAGAGAAACAATAGTCACGTAAATAAGTTTTTAATTCAAAGACAAA
323 AAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
23668151 AAGTTGTTTACAAGATGACAAAGTATTTAGGCCAAATGCTGCGA
388 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * * * * * *
23668195 TTTCCTGATCATGTAATGTTC-------T-CAC-ATA--AAT--A-AGT-TT--TTAATTCAAAG
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGG
* * * * * * * ** *
23668243 -ACCAAAAGTTATTTACAAAGTC-AAAAACTATTTAGACTCAATGATT-TGATTTTTTGAGCACG
65 AACC-GAAGTTA-TAAAAAACTCGTAAAA--GTTT-GA--CAA-G-TTCAGA-AGTTCGA-C-C-
**** * * * * *
23668305 GAATGTTTTTAAAATTTGTCTTGAACTCGATGATGTGATATCACGTAAATATA-TTTTTAATTTA
117 -AA-G-AACCAAGA---G---AGAA-AC-A--A--T--TCTCACGTAAATA-AGTTTTTAATTCA
* * * * * *
23668369 AAGAGCAAATGTTGTTTACAAAATGACATACTATTTAGACCAAATGATGCAATTTCCCGAGCATG
164 AAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATG
* * *
23668434 GAATGTTCGGAAAATTGCTAGAAGAAATGGATCGTCTTGAATACTTTAAGGAA-CGAAAGTTATA
229 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG-AAGTTATA
* * ** * * * *
23668498 AAATAACTCGTAAAAGTTTGACATGTTTTGAAGTTCGTCAAAGAA-CAAGAGAGAAATAATTCTT
293 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTC
* *
23668562 ACGTAAATAAGTTTTTAATTCAAAGATCAAAAGTTATTTACAAAATGACAAACTATTTAGACCAA
358 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
23668627 ATGATGCGA
423 ATGATGCGA
* * * * * * *
23668636 TTTCCAAAGCATGAAATGTTCGGAAAATTGCTAGAAGGAATGAATCGTTTTAAATACTTTAAGGA
1 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * *
23668701 ACCTG-AGTTATAAACAAACTCGTAAAAGTTTAACAAGATCGGAAGTTCGACCAAGAACCAAGAG
66 ACC-GAAGTTATAAA-AAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGAG
*
23668765 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTGCAAAATGAAAAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
* * * *
23668830 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGCTCGGAAAATTGTTCGAAGGAATGG
194 CTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * * * * *
23668895 AACGTCTTGAATACTGTAAGGAACCGAAGATATAAAAGTACTTGTAAAAGTTTGACAAGTTC-TA
259 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * *
23668959 ATGTTTGGCCAAGAACCAAGAGAGAAACAATACTCACATAAATAAGTTTTTAATTCAAAGACCAA
324 A-GTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* *
23669024 AAGTTTTTTACAAAATGACAAACTATTTAGGCCAAATGATGCGA
388 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * * *
23669068 TTTCTC-GATCATGTAATATTCAAAAAATTGCTCGAATGAATGGATCGTATTGAATACTTTAAGG
1 TTTC-CAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * ** * * *
23669132 AACCGAAGTAATAAAAGAACTCATAAAAGTTTGACAAGTTCAGATTTTTGGCCAGGAACCAAGAG
65 AACCGAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGAG
* * * * * * *
23669197 ATAAACAATTATCACATAAATAAGTTCTTAATTCAAAGTCCAAAAGTTCTTTACAAAAAGAAAAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
* *
23669262 CTATTTAGACCAAATGATGCGATTTCCTAG-GCAAGGATTGTTCGAAAAATTGCTCGAAGGAATG
194 CTATTTAGACCAAATGATGCGATTTCC-AGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * *
23669326 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGATACGTTCGG
258 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* * * * * *
23669391 AAGTTTGTCCATGAACC-A-AGAG--A-AATTCTCACGTAAATAAGTTATTAATTTAAAGACAAA
323 AAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
23669451 AAGTTGTTTACAAAATGGCAAACTATTTAGACCAAATTATACAA
388 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * *
23669495 TTTCCCGTGCATGGAATG-TCTGGAAAATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGG
1 TTTCCAGAGCATGGAATGTTC-AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * * *
23669559 AATCAAAGTTATAAATGAAGTCGTAAAAGTGTGAGAAGTTC----G-T-G--CAAGAA-CAAGAG
65 AACCGAAGTTATAAA-AAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGAG
* * * *
23669615 AGAAACGATTCTCACGTAAATAAGTTTTTAATT-ATTAGACCAAAATTTGTTTACAAAATGACAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCA-AAGACCAAAAGTTGTTTACAAAATGAAAA
* * * *
23669679 ATTATTTAGATCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAACTTGCTTGAAGGAATG
193 ACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * ** * *
23669744 GATCGTCTTGAATACTTTAATGAACCGAAGTTGTGAAAGAACTAATAAAATTTTGACAAGTTCAG
258 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* * ** * * * * *
23669809 AAGTTC-GTCAAAAAATAAGAGAGAAACATTTCTTACGTACATAAGTTTTTAATTTAAAAACCAA
323 AAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
23669873 AAGTTGTTTACAAAATGACTAACAACTTAGATCAAATGATGTGA
388 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * *
23669917 TTTCTC-GAGCATGGAATGCTC-GAAAAATTGCTCGATGGAATGGATCGTCTTGATTAATTTAAG
1 TTTC-CAGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * *
23669980 GAACCAAAGTTATAAAAAAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCATGAACCAAGA
64 GAACCGAAGTTAT-AAAAAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGA
* * * * *
23670045 GAGAAACAATTCTCAC-TTAATAAGTTCTTAATGCAAAAACCAAAAGTTGTTTACAAAATGATAA
128 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
* * * * * * * * * *
23670109 ACTATTTAGACCATATGATGAGATTTCCCG-CCTATGGAAAGTTTGGAAAATTTCTCAAATGAAT
193 ACTATTTAGACCAAATGATGCGATTTCCAGAGC-ATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * *
23670173 GGATCATCTTGAATAC-TTAGAAGAATCGAAGTTGTAAAAGAACTCGTAA
257 GGATCGTCTTGAATACTTTA-AGGAACCGAAGTTATAAAAGAACTCGTAA
23670222 TATTTCTCTT
Statistics
Matches: 3055, Mismatches: 540, Indels: 275
0.79 0.14 0.07
Matches are distributed among these distances:
409 2 0.00
410 113 0.04
411 142 0.05
412 63 0.02
414 1 0.00
415 23 0.01
416 17 0.01
417 12 0.00
418 180 0.06
419 13 0.00
420 4 0.00
421 6 0.00
422 161 0.05
423 10 0.00
424 4 0.00
425 1 0.00
426 24 0.01
427 154 0.05
428 5 0.00
429 65 0.02
430 226 0.07
431 712 0.23
432 683 0.22
433 88 0.03
434 5 0.00
435 3 0.00
436 1 0.00
437 1 0.00
438 1 0.00
439 3 0.00
440 1 0.00
441 100 0.03
442 169 0.06
443 1 0.00
445 3 0.00
446 1 0.00
447 2 0.00
448 1 0.00
449 3 0.00
450 2 0.00
451 8 0.00
452 3 0.00
453 4 0.00
454 2 0.00
455 3 0.00
456 5 0.00
457 17 0.01
458 7 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (431 bp):
TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
ACCGAAGTTATAAAAAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGAGAG
AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACT
ATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
TTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
Found at i:23667455 original size:196 final size:199
Alignment explanation
Indices: 23666881--23667493 Score: 550
Period size: 196 Copynumber: 3.0 Consensus size: 199
23666871 AGACCAAAAG
* * *
23666881 TTGTTTACAAAATAAAAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCAGA
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCTAGAGCATGGAATGTTCATA
* * * * *
23666946 AAATTGTTCGAAGAAATGGATCGTCTTGAATACT-TTAAGGAACCG-AAGTTATAAAAGAACTCG
66 AAATTGCTCGAAGGAATAGATC-TCTTGAATACTCTT-AGG-AGCGAAAGTTATAAAAGAACTCA
* * * * **
23667009 TAAAAGTGTGACAAGTTC-AGGAGTTC--GACTAAGAACCAAGAGAGAAACAATACTGATGTAAA
128 TAAAAGTGCGACAAGTTCGA-AAGTTCATG-C-AAGAA-CAAGAGAG-AACAATTCTCACCTAAA
23667071 TAAGTTTTCAATTCAAAGATTAAAAT
188 TAAG-------TT-----ATT--AAT
* * * **
23667097 TTGTTTACAAAATGACAAACTATTTAGGCCAAATGATGCGATTTCTCGATTATGGAATGTTCATA
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCTAGAGCATGGAATGTTCATA
* *
23667162 AAATTGGTCGAAGGAATAGATCTCTTGAATACTCTTAGGAGCGAAAGTTATAAAAGAACTCGTAA
66 AAATTGCTCGAAGGAATAGATCTCTTGAATACTCTTAGGAGCGAAAGTTATAAAAGAACTCATAA
* ** * * *
23667227 ATGTTTGACAAGTTCGAAAGTTCATTCAAGAACCA-AGAG-A-AATTCTCACGTAAATAAGTTAT
131 AAGTGCGACAAGTTCGAAAGTTCATGCAAGAACAAGAGAGAACAATTCTCACCTAAATAAGTTAT
23667289 TAAT
196 TAAT
* * *
23667293 TTGTTTACAAATTGAAAAATTATTTAGATCAAATGATGCGATTTCTAGAGCATGGAATG-TC-TG
1 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCTAGAGCATGGAATGTTCAT-
* * *
23667356 GAAATTGCTCGAAGGACTGGATCATCTTGAATACT-TTAAGGAGTCG-AAGTTATAAAAGAACTC
65 AAAATTGCTCGAAGGAATAGATC-TCTTGAATACTCTT-AGGAG-CGAAAGTTATAAAAGAACTC
* * *
23667419 ATAAAAGTGCGAGATGTTCTG-AAGTTCGTGCAAGAACAAGAGAGAAACAATTCTCACCTAAATA
127 ATAAAAGTGCGACAAGTTC-GAAAGTTCATGCAAGAACAAGAGAG-AACAATTCTCACCTAAATA
*
23667483 AGTTTTTAAT
190 AGTTATTAAT
23667493 T
1 T
23667494 ATAAAACCAA
Statistics
Matches: 340, Mismatches: 43, Indels: 44
0.80 0.10 0.10
Matches are distributed among these distances:
194 1 0.00
195 23 0.07
196 115 0.34
197 7 0.02
198 3 0.01
199 1 0.00
200 25 0.07
203 2 0.01
210 15 0.04
211 1 0.00
213 4 0.01
214 5 0.01
215 58 0.17
216 80 0.24
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (199 bp):
TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCTAGAGCATGGAATGTTCATA
AAATTGCTCGAAGGAATAGATCTCTTGAATACTCTTAGGAGCGAAAGTTATAAAAGAACTCATAA
AAGTGCGACAAGTTCGAAAGTTCATGCAAGAACAAGAGAGAACAATTCTCACCTAAATAAGTTAT
TAAT
Found at i:23668310 original size:97 final size:97
Alignment explanation
Indices: 23668119--23668311 Score: 219
Period size: 97 Copynumber: 2.0 Consensus size: 97
23668109 GAAACAATAG
* * * * * *
23668119 TCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAGATGACAAAGTATTTAGGCC
1 TCACATAAATAAGTTTTTAATTCAAAGACAAAAAGTTATTTACAAGATCAAAAACTATTTAGACC
* * * *
23668184 AAATGCTGCGATTTCCTGATCATGTAATGTTC
66 AAATGATGCGATTTCCTGAGCACGGAATGTTC
*
23668216 TCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAA-AGTCAAAAACTATTTAGAC
1 TCACATAAATAAGTTTTTAATTCAAAGACAAAAAGTTATTTACAAGA-TCAAAAACTATTTAGAC
** **
23668280 TC-AATGATTTGATTTTTTGAGCACGGAATGTT
65 -CAAATGATGCGATTTCCTGAGCACGGAATGTT
23668312 TTTAAAATTT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
96 1 0.01
97 77 0.97
98 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (97 bp):
TCACATAAATAAGTTTTTAATTCAAAGACAAAAAGTTATTTACAAGATCAAAAACTATTTAGACC
AAATGATGCGATTTCCTGAGCACGGAATGTTC
Found at i:23670631 original size:25 final size:25
Alignment explanation
Indices: 23670603--23670653 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
23670593 TTGGGAACCA
23670603 AAGGATCTTCATCCACACGAGGGAC
1 AAGGATCTTCATCCACACGAGGGAC
23670628 AAGGATCTTCATCCACACGAGGGAC
1 AAGGATCTTCATCCACACGAGGGAC
23670653 A
1 A
23670654 CGTCTAGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.27, G:0.24, T:0.16
Consensus pattern (25 bp):
AAGGATCTTCATCCACACGAGGGAC
Found at i:23671490 original size:18 final size:19
Alignment explanation
Indices: 23671459--23671494 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
23671449 GAATATTTTT
*
23671459 TATTTTTTTATTTTTCTCA
1 TATTTTTCTATTTTTCTCA
23671478 TATTTTTCT-TTTTTCTC
1 TATTTTTCTATTTTTCTC
23671495 TACTTTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (19 bp):
TATTTTTCTATTTTTCTCA
Found at i:23677766 original size:10 final size:10
Alignment explanation
Indices: 23677753--23677782 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
23677743 AGCCTAGTCT
23677753 ATTCAGCTCC
1 ATTCAGCTCC
23677763 ATTCAGCTCC
1 ATTCAGCTCC
23677773 ATTCAGCTCC
1 ATTCAGCTCC
23677783 TTACTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.40, G:0.10, T:0.30
Consensus pattern (10 bp):
ATTCAGCTCC
Found at i:23678842 original size:39 final size:39
Alignment explanation
Indices: 23678796--23678894 Score: 171
Period size: 39 Copynumber: 2.5 Consensus size: 39
23678786 TTAAATAGGG
23678796 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
*
23678835 TTTTAATGTGTCTTATTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
* *
23678874 TTTTAAGGTGTCTAAGTTTGA
1 TTTTAATGTGTCTTAGTTTGA
23678895 GACAAATTAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.25, C:0.05, G:0.16, T:0.54
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
Found at i:23680584 original size:39 final size:39
Alignment explanation
Indices: 23680538--23680634 Score: 158
Period size: 39 Copynumber: 2.5 Consensus size: 39
23680528 TTAAATAGGG
23680538 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
*
23680577 TTTTAATGTGTCTTATTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
* * *
23680616 TTTCAAGGTGTCTAAGTTT
1 TTTTAATGTGTCTTAGTTT
23680635 AAGACAAATT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.25, C:0.06, G:0.15, T:0.54
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
Found at i:23680718 original size:32 final size:32
Alignment explanation
Indices: 23680682--23680744 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
23680672 AGCTGAAATT
* * *
23680682 AATTAGCTGATTAATGTGTTTTAGGTACATGG
1 AATTAGCTGATTAATATATTTCAGGTACATGG
*
23680714 AATTAGTTGATTAATATATTTCAGGTACATG
1 AATTAGCTGATTAATATATTTCAGGTACATG
23680745 AATGGATGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.41
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAGGTACATGG
Found at i:23682151 original size:39 final size:39
Alignment explanation
Indices: 23682067--23682151 Score: 118
Period size: 39 Copynumber: 2.2 Consensus size: 39
23682057 GATAGGGTTT
* *
23682067 AGTTTGATACATATTTAATAGTTCGTTTTAATGTGTCTT
1 AGTTTGATACATATTTAATAGTTCGTTTTAAGGTGTCTA
* *
23682106 ATTTTGATACATATTTTATAGTT-GTTTTTAAGGTGTCTA
1 AGTTTGATACATATTTAATAGTTCG-TTTTAAGGTGTCTA
23682145 AGTTTGA
1 AGTTTGA
23682152 GACAAATTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 1 0.03
39 39 0.98
ACGTcount: A:0.26, C:0.06, G:0.16, T:0.52
Consensus pattern (39 bp):
AGTTTGATACATATTTAATAGTTCGTTTTAAGGTGTCTA
Found at i:23682233 original size:32 final size:32
Alignment explanation
Indices: 23682197--23682259 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
23682187 AGCTGAAATT
* *
23682197 AATTAGCTAATTAATGTGTGTCAGGTACATGC
1 AATTAGCTAATTAATATATGTCAGGTACATGC
* *
23682229 AATTAGCTGATTAATATATTTCAGGTACATG
1 AATTAGCTAATTAATATATGTCAGGTACATG
23682260 TATGGATGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (32 bp):
AATTAGCTAATTAATATATGTCAGGTACATGC
Found at i:23684978 original size:215 final size:216
Alignment explanation
Indices: 23683853--23685186 Score: 1778
Period size: 216 Copynumber: 6.2 Consensus size: 216
23683843 TCTCGTATCA
* * ** *
23683853 TTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGAATTGTTTCTCTCTTGGTCCCCGGCCTAA
1 TTTGGTCTTTGAATTAAAAACTTATTTACGT--GAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA
* * * * * *
23683918 CTTCTTAACTTGTCAAACATTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTTTTCAATACG
64 CTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * *
23683983 ATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGGGTAATCGCATCATTTGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
*
23684048 AGTTTGTCATTCTGTAAACAACT
194 AGTTTGTCATTTTGTAAACAACT
* * **
23684071 TTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAAAA
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * * * *
23684136 TCCGAACTTGTCAAACTTTTACAAGTTCTTTTATTACTTTGGTTCCTTAAAGTATTCAATACGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * * * * * **
23684201 CCATTCATTCGAGCAATTCTCCGAACATTCCAAGATTGAAAAATCGCATCATTTGACCTAAATAG
131 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
*
23684266 TTTGTTATTTTGTAAACAACT
196 TTTGTCATTTTGTAAACAACT
* * *
23684287 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTATTGGCCGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * * * *
23684352 TCTTAACTTGTTAAACTTTTACGAGTTCTTTTACAACTTCAGTT-CTTCTAAGTATTCAAGACGA
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACGA
* * *
23684416 TCCATTCCTTTGAGCAACTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
*
23684481 GTTTATCATTTTGTAAACAACT
195 GTTTGTCATTTTGTAAACAACT
* *
23684503 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TCTTTGTCCTAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGCCGAAC
* * * *
23684567 TTCTTAACTTGTCAAACTTTTACGAGTTCTTTTACACCTTCGGTT-CTTCTAAGTATTCAAGACG
65 TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACG
* ** * *
23684631 --GCA-T--TT-GAGCAATTTTCCAAACTTTGCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
*
23684690 AGTTTGTTATTTTGTAAACAA-T
194 AGTTTGTCATTTTGTAAACAACT
* * *
23684712 TTGTGGTCTTTGAATTAAAAAGTTA-TTAAGTGAGAATTGTTTCTATCTTGGTTCTTGGCCGAAC
1 TT-TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC
* *
23684776 TT-TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAATATTCAAGACG
65 TTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * *
23684840 ATCCATTCCTTCGAGCAATTTTTTAAACATTCCATGATCGAAAAATCGCATCATTTGGCCTAAAT
129 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
23684905 AGTTTGTCATTTTGTAAACAAC-
194 AGTTTGTCATTTTGTAAACAACT
* * * * *
23684927 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGTATTATTTCTCTCTTGGTTATTGGTCGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
*
23684992 TCTGAACTTGTCAAACTTTTAGGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * *
23685057 CCATTCCTTCGAACAATTTTTTGAACATTCCATGCTCGGGAAATCGCATGATTTGGTCTAAATAG
131 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
23685122 TTTGTCATTTTGTAAACAACT
196 TTTGTCATTTTGTAAACAACT
* *
23685143 TTTGG-CTTTTGAATTAAAAACTTTTTTACGTGATAATTGTTTCT
1 TTTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
23685187 GATGTGAGCA
Statistics
Matches: 981, Mismatches: 118, Indels: 36
0.86 0.10 0.03
Matches are distributed among these distances:
208 1 0.00
209 87 0.09
210 92 0.09
211 4 0.00
212 1 0.00
213 1 0.00
214 24 0.02
215 245 0.25
216 497 0.51
218 29 0.03
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (216 bp):
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAACAACT
Found at i:23685340 original size:17 final size:17
Alignment explanation
Indices: 23685320--23685352 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
23685310 TTTAAGGACT
23685320 TTTTAATTTTA-TTTAAC
1 TTTT-ATTTTAGTTTAAC
23685337 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
23685353 TAAGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAC
Found at i:23685641 original size:50 final size:52
Alignment explanation
Indices: 23685587--23685702 Score: 121
Period size: 50 Copynumber: 2.3 Consensus size: 52
23685577 TAAATAATGA
* *
23685587 CATGCGTTAAGTAACTTACATGTTAGTTAAA-TATGCATCA-TAAATCCTAT
1 CATGCATTAAGTAACTCACATGTTAGTTAAAGTATGCATCATTAAATCCTAT
** * * * *
23685637 CATGCATTTTGTAACTCCCATTTTAGTTAAAGTTTGCATCATTAAAT-CAAGT
1 CATGCATTAAGTAACTCACATGTTAGTTAAAGTATGCATCATTAAATCCTA-T
*
23685689 CATGCATTTAGTAA
1 CATGCATTAAGTAA
23685703 TCCATTAGTT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
50 25 0.46
51 10 0.19
52 19 0.35
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (52 bp):
CATGCATTAAGTAACTCACATGTTAGTTAAAGTATGCATCATTAAATCCTAT
Found at i:23688064 original size:216 final size:216
Alignment explanation
Indices: 23686857--23689354 Score: 2555
Period size: 215 Copynumber: 11.7 Consensus size: 216
23686847 CTAACTTCTT
* * * *
23686857 AAACTTTTACGAGTTCTTTTACAACTTCGATT-CTTCTAAGTATTCAAGACGATCCATTCCTTT-
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACTATCCATTCCTTTG
* * *
23686920 -G--A----TC-AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAATTTTTCATTTT
65 AGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
23686977 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTA-TTAAGTGAGAATTGTCTCTCTCTTGGTTCT
130 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* *
23687041 TGG-CTGAACTTTTGAACTTGCC
195 TGGTC-GAACTTCTGAACTTGTC
* * * *
23687063 AAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAATATTCAAGACGATCCATTCCTTTGA
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTTGA
* * **** * *
23687128 GCAATTTTT-TAA-A---CATGATTAAAAAATTGCATCATTTGGCCTAAATAGTTTGTCATTTTG
66 GCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
23687188 TAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGTATTGTTTCCCTCTTGGTTATT
131 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
** *
23687253 GGTCGAACTTCCAAACTTGTT
196 GGTCGAACTTCTGAACTTGTC
*
23687274 AAACTTTTACGAGTTATTTTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACTATCCATTCCTT
1 AAACTTTTACGAG---TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACTATCCATTCCTT
* * * *
23687339 CGAACAATTTTTCGAACATTCTATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
63 TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * *
23687404 TTGTAAACAAGTTTTGGTTTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGG-T
128 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * *
23687468 CTTTGTCCTAACTTTTTAACTTGTC
193 CTTGGT-CGAACTTCTGAACTTGTC
* * * * *
23687493 AAACTTTTACGAGTTTTTTTACAAATTCGG-TCCTTCTAAGTATCCAAGACCT-TCCATTCCTTT
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGA-CTATCCATTCCTTT
* * * * * *
23687556 AAGCAACTTTCCG---A----A--CTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTC
64 GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
23687612 TGTAAACAACTTGTGGTCTTTGAATTAAAAACTTA-TTAAGTGAGAATTGTTTCTCTCTTGGTTC
129 TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* *
23687676 TTGGCCTAACTT-TCGAACTTGTC
194 TTGGTCGAACTTCT-GAACTTGTC
* * * *
23687699 AAAC--TT-----TTCTTTTATAACTTTGGTTCCATAAAATATTCAAGA-TGATCCATTCCGTTG
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACT-ATCCATTCCTTTG
* * * ** * *
23687756 AGCAATTTTTTGAACATTTCATGATCGAAAAATCGCACCATTT-GCCTAAATAGTTTGTCATTTT
65 AGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * *
23687820 GTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGA-ATATTATTCCTCTCTTGGTTA
130 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA-ATTGTTTCTCTCTTGGTTC
*
23687884 TTGGTCGAACTTCTGTACTTGTC
194 TTGGTCGAACTTCTGAACTTGTC
* * *
23687907 AAACTTTTACGAGTTCTTTTATAATTTCGGTTCCTTAAAGTGTTGAAGACTATCCATTCCTTTGA
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTTGA
*
23687972 ACAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
66 GCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * *
23688037 TAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTATGTGAAAATTG-TT-TCTCTTGG-TCTT
131 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
23688099 TGTCCTAACTTGTTAACTTGTC
196 GGT-CGAACTTCTGAACTTGTC
* * * * *
23688121 AAACTTTTACGAGTTCTTTTACAACTTCGATT-CTTCTAAGTATTCAAGA-TGGTCCATTCATTT
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACT-ATCCATTCCTTT
* * * * * *
23688184 GAGTAATTTTTCTGAACTTTTCATGCTCGGGAAATCGCATCATTTCGTAC-AAAAAGTTTGTTAT
64 GAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTAAATAGTTTGTCAT
* * * * *
23688248 TTTGTAAACAAGTTGTGGTCTTTGAATTAAAAAATTA-TTAAGTGAGAATTGTTTCTTTCTTGGT
127 TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* *
23688312 TATTGGCCGAACTT-TCGAACTTGTC
192 TCTTGGTCGAACTTCT-GAACTTGTC
* * * * * *
23688337 AAACTTTTATGAGTTTTTTTATAACTTTGGTTCCTTAAACTAATCAAGACGATCCATTCCTTCT-
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACTATCCATTCCTT-TG
* * * * * *
23688401 TGTAATTTTTC-AATCACTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATTGTTAGTCATTT
65 AGCAATTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
23688465 TGTAAACAACTTTTGGGT-TTTGAATTAAAAACTTATTTACGTAAGAATTTTTTCTCTCTT-GTT
129 TGTAAACAACTTTT-GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* *
23688528 CTTGGACGAACTTCCGAACTTGTC
193 CTTGGTCGAACTTCTGAACTTGTC
* * * * *
23688552 AAAATTTTACTAGTTCTTTTATAACTTTGGTTCATTAAAGTATTCAAGA-TGATCCATTTCTTTT
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACT-ATCCA-TTCCTTT
* * ** *
23688616 GAGCAA-TTTTCTGAGCATTCCTTGCTCTAGAAATCACATCATTTTGGTCTAAATAGTTTGTCAT
64 GAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCAT
* *
23688680 TTTGTAAACAAATTTTTGTCTTAT-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-G
127 TTTGTAAACAACTTTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
** * * *
23688743 TTCTTGCACAAACTTCCGAACTTCTC
191 TTCTTGGTCGAACTTCTGAACTTGTC
* * * * * *
23688769 ACACTTTTACGAGTTCTTTTATAACTT-GAATTCCTTAAAGTTTTCAAGACGATCCAATCCTTCG
1 AAACTTTTACGAGTTCTTTTATAACTTCG-GTTCCTTAAAGTATTCAAGACTATCCATTCCTTTG
* * * * * * * * *
23688833 AGCAA-TTTTCCAGACATTCCATGCACAGGAAATCACATAATTTGCTTTAAATACTTTGCCATTT
65 AGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * *
23688897 TGTAAACAACTTTTTGTCTTTAAATTAATAACTTATTTATGTGAGAA---TTTC-C-CTTGGTTC
129 TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
*
23688957 TTGGAT-GAACTTCCGAACTTGTC
194 TTGG-TCGAACTTCTGAACTTGTC
* * * * *
23688980 AAACATTTACGAGTTCTTTTATAGCTTCGATTCC-TAGGAGTATTCAAGACGATCCATTCCTTTG
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACTATCCATTCCTTTG
* * * * *
23689044 ACCAATTTTAT-GAACATTCCATGCTCAGGAAATCACATCA-TTGAGTCTAAATAGCTTTTTCAC
65 AGCAATTTT-TCGAACATTCCATGCTCGGGAAATCGCATCATTTG-GTCTAAATAG-TTTGTCAT
* *
23689107 TTTGTAAACAACTTTTTAGTCTTTGAATTCAAAACTT-TTTACGTGAGAATTGTTTCTCTCTTGG
127 TTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
* *
23689171 TTTTTGGTCGAACTTCCGAACTTGTC
191 TTCTTGGTCGAACTTCTGAACTTGTC
* *
23689197 AAAC-TTTACGAGTT-TGTTTATAACTTCAGTTCCTTAAAGTATTCAAGACTATCCATTCCTTCG
1 AAACTTTTACGAGTTCT-TTTATAACTTCGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTTG
** * * * ** * *
23689260 AGCAATTTGCCAAACTTTTCATGCTTTGGAAATCACATCATTTGGTATAAATAGTTTGTCATTTT
65 AGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
23689325 GTAAACAACTTTTGGTCATTAAATTAAAAA
130 GTAAACAACTTTTGGTCTTTGAATTAAAAA
23689355 ATTTTGATAC
Statistics
Matches: 1910, Mismatches: 284, Indels: 188
0.80 0.12 0.08
Matches are distributed among these distances:
197 1 0.00
199 42 0.02
200 4 0.00
202 1 0.00
204 2 0.00
205 1 0.00
206 98 0.05
207 129 0.07
208 62 0.03
209 2 0.00
210 82 0.04
211 163 0.09
212 38 0.02
213 32 0.02
214 172 0.09
215 395 0.21
216 368 0.19
217 192 0.10
218 6 0.00
219 120 0.06
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (216 bp):
AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTTGA
GCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
GGTCGAACTTCTGAACTTGTC
Found at i:23692161 original size:17 final size:17
Alignment explanation
Indices: 23692130--23692162 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
23692120 GCAAACACTA
23692130 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
23692147 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
23692163 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Done.