Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 80 of 126
Found at i:24232498 original size:86 final size:86
Alignment explanation
Indices: 24232353--24232540 Score: 322
Period size: 86 Copynumber: 2.2 Consensus size: 86
24232343 GGTCGAAGCA
24232353 ATGAGACACGGAGAAGTGGACCAAATTCGTCTTCCTGAGAAGATCCAGAGAAGCGAATTAAAACA
1 ATGAGACACGGAGAAGTGGACCAAATTCGTCTTCCTGAGAAGATCCAGAGAAGCGAATTAAAACA
24232418 ACCGAGGCGATCATCTTCCTG
66 ACCGAGGCGATCATCTTCCTG
* *
24232439 ATGAGACACGGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCTAATTAAAACA
1 ATGAGACACGGAGAAGTGGACCAAATTCGTCTTCCTGAGAAGATCCAGAGAAGCGAATTAAAACA
* *
24232504 ATCGAGGCGGTCATCTTCCTG
66 ACCGAGGCGATCATCTTCCTG
* *
24232525 ATGAGATACAGAGAAG
1 ATGAGACACGGAGAAG
24232541 AACACCAACT
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 96 1.00
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (86 bp):
ATGAGACACGGAGAAGTGGACCAAATTCGTCTTCCTGAGAAGATCCAGAGAAGCGAATTAAAACA
ACCGAGGCGATCATCTTCCTG
Found at i:24232679 original size:200 final size:200
Alignment explanation
Indices: 24232432--24233148 Score: 1085
Period size: 200 Copynumber: 3.6 Consensus size: 200
24232422 AGGCGATCAT
* *
24232432 CTTCCTGATGAGACACGGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCTAAT
1 CTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAAT
* *
24232497 TAAAACAATCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAACACCAACTCAGCGCTCAAC
66 TAAAACAATCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAAC
* * *
24232562 ACCAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAAGTCGAAGCAATAAAAAG
131 GCGAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAG
24232627 GTTAG
196 GTTAG
* * *
24232632 CTTCCTGATGAGACACAGAGAAGTGGACCAGATTCATCTTTCTGAGGAGATCCAGAGAAGCGAAT
1 CTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAAT
* * * * * * * *
24232697 GAAAACAAGCGAGACGGTCATCTTCCTGATGAGATACAGAAAAGAATACGAACTCAATGCTTAAT
66 TAAAACAATCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAAC
* *
24232762 GCGAGCAAATCTTTGAACCCAGCTTCCTGATGAGACACTGAGAAGTAGGTCGAAGCAATAAAAAG
131 GCGAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAG
24232827 GTTAG
196 GTTAG
* *
24232832 CTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCTTGAGGAGATCCAAAGAAGCGAAT
1 CTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAAT
* * * * *
24232897 TGAAACAAACGAGGCGATCATCTTCCTGATGAGATATAGAGAATAATACCAACTCAACGCTCAAC
66 TAAAACAATCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAAC
* *
24232962 GCGAGCAGATCTTCGAACCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAAAG
131 GCGAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAG
24233027 GTTAG
196 GTTAG
*
24233032 CTTCTTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAAT
1 CTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAAT
* * * * * *
24233097 TAAAACAGAT-GATTGCAGTCATTTTCCTGATGAGACACAGGGAAGAAGACCA
66 TAAAACA-ATCGA-GGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCA
24233149 GGTCAATGAA
Statistics
Matches: 460, Mismatches: 55, Indels: 3
0.89 0.11 0.01
Matches are distributed among these distances:
200 429 0.93
201 31 0.07
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (200 bp):
CTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAAT
TAAAACAATCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAAC
GCGAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAG
GTTAG
Found at i:24233552 original size:17 final size:18
Alignment explanation
Indices: 24233515--24233557 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
24233505 ATTTGGTTTC
* *
24233515 AAATTTATTTCTAAGTTT
1 AAATTTAATTCTAAATTT
24233533 AAATTTAATT-TAAATTT
1 AAATTTAATTCTAAATTT
24233550 AAATTTAA
1 AAATTTAA
24233558 ATTTGTTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
AAATTTAATTCTAAATTT
Found at i:24233556 original size:23 final size:23
Alignment explanation
Indices: 24233530--24233579 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
24233520 TATTTCTAAG
24233530 TTTAAATTTAATT-TAAATTTAAA
1 TTTAAATTT-ATTCTAAATTTAAA
* *
24233553 TTTAAATTTGTTCTAAGTTTAAA
1 TTTAAATTTATTCTAAATTTAAA
24233576 TTTA
1 TTTA
24233580 GCTTAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 2 0.08
23 22 0.92
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (23 bp):
TTTAAATTTATTCTAAATTTAAA
Found at i:24233579 original size:6 final size:6
Alignment explanation
Indices: 24233530--24233561 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
24233520 TATTTCTAAG
24233530 TTTAAA TTT-AA TTTAAA TTTAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT
24233562 GTTCTAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:24234330 original size:18 final size:19
Alignment explanation
Indices: 24234309--24234354 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
24234299 ATAATAATAA
24234309 TAATAATAAT-AATGTTTT
1 TAATAATAATAAATGTTTT
24234327 TAATAATAATAAATGTTTT
1 TAATAATAATAAATGTTTT
24234346 TAATAATAA
1 TAATAATAA
24234355 AGTAATAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 10 0.37
19 17 0.63
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (19 bp):
TAATAATAATAAATGTTTT
Found at i:24234335 original size:24 final size:24
Alignment explanation
Indices: 24234303--24234380 Score: 78
Period size: 21 Copynumber: 3.5 Consensus size: 24
24234293 TCAATAATAA
24234303 TAATAATAATAATAATAATG-TTT
1 TAATAATAATAATAATAATGTTTT
24234326 T--TAATAATAAT-A-AATGTTTT
1 TAATAATAATAATAATAATGTTTT
* *
24234346 TAATAATAA-AGTAATAATGATATT
1 TAATAATAATAATAATAATG-TTTT
*
24234370 TATTAATAATA
1 TAATAATAATA
24234381 TAAAAAAAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
19 4 0.09
20 5 0.11
21 12 0.27
22 7 0.16
23 5 0.11
24 11 0.24
25 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (24 bp):
TAATAATAATAATAATAATGTTTT
Found at i:24234338 original size:3 final size:3
Alignment explanation
Indices: 24234295--24234321 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
24234285 AAACAGCATC
24234295 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
24234322 GTTTTTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:24235458 original size:29 final size:29
Alignment explanation
Indices: 24235425--24235707 Score: 150
Period size: 29 Copynumber: 9.7 Consensus size: 29
24235415 AAAATTTTAG
*
24235425 AAAATTA-TATTTTAACCCCGAAAC-TTCCA
1 AAAATTACCATTTT-ACCCC-AAACTTTCCA
24235454 AAAATTACCATTTTACCCCAAACTTTCC-
1 AAAATTACCATTTTACCCCAAACTTTCCA
* * *
24235482 AAAA-TCCCATTTTTAACCTC-GA-TTTCACCA
1 AAAATTACCA-TTTT-ACCCCAAACTTT--CCA
* *
24235512 AAAATTACTATTTTACCCCCAAACTTT-CT
1 AAAATTACCATTTTA-CCCCAAACTTTCCA
24235541 AAAATT-CCATTTTTAACCCC-AA-TTTCACCA
1 AAAATTACCA-TTTT-ACCCCAAACTTT--CCA
*
24235571 AAAATTACCATTTTACCCTCAAGCTTTCC-
1 AAAATTACCATTTTACCC-CAAACTTTCCA
* *
24235600 AAAATT-CTATTTTAACCTC-AA-TTTCACCA
1 AAAATTACCATTTT-ACCCCAAACTTT--CCA
* *
24235629 AAAAATACCATTTTACCCCCAAACCTTCC-
1 AAAATTACCATTTTA-CCCCAAACTTTCCA
* *
24235658 AAAATTTCCATTTTTAACCCC-GA-TTTCACCA
1 AAAATTACCA-TTTT-ACCCCAAACTTT--CCA
24235689 AAAATTACCATTTTACCCC
1 AAAATTACCATTTTACCCC
24235708 CGAACCTTCT
Statistics
Matches: 197, Mismatches: 24, Indels: 66
0.69 0.08 0.23
Matches are distributed among these distances:
26 3 0.02
27 11 0.06
28 28 0.14
29 71 0.36
30 56 0.28
31 20 0.10
32 8 0.04
ACGTcount: A:0.36, C:0.30, G:0.01, T:0.33
Consensus pattern (29 bp):
AAAATTACCATTTTACCCCAAACTTTCCA
Found at i:24235557 original size:59 final size:59
Alignment explanation
Indices: 24235451--24235735 Score: 396
Period size: 59 Copynumber: 4.9 Consensus size: 59
24235441 CCCGAAACTT
* * *
24235451 CCAAAAATTACCATTTTA-CCCCAAACTTTCCAAAATCCCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
* *
24235509 CCAAAAATTACTATTTTACCCCCAAACTTTCTAAAATTCCATTTTTAACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
* * * *
24235568 CCAAAAATTACCATTTTACCCTCAAGCTTTCCAAAATTCTA-TTTTAACCTCAATTTCA
1 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
* * *
24235626 CCAAAAAATACCATTTTACCCCCAAACCTTCCAAAATTTCCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAA-TTCCATTTTTAACCCCAATTTCA
* * * *
24235686 CCAAAAATTACCATTTTACCCCCGAACCTTCTAAAATCCCA-TTTTAACCC
1 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCC
24235736 TAAATTTTCT
Statistics
Matches: 202, Mismatches: 22, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
58 74 0.37
59 80 0.40
60 48 0.24
ACGTcount: A:0.35, C:0.31, G:0.01, T:0.33
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
Found at i:24258097 original size:20 final size:20
Alignment explanation
Indices: 24258050--24258090 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
24258040 GCCATCTATT
*
24258050 GAAGAAGCTCCTACTTTGGA
1 GAAGAAGCTCCTACTTTAGA
24258070 GAAGAAGCTCCTACTTTAGA
1 GAAGAAGCTCCTACTTTAGA
24258090 G
1 G
24258091 TTGAAGCCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (20 bp):
GAAGAAGCTCCTACTTTAGA
Found at i:24261654 original size:26 final size:26
Alignment explanation
Indices: 24261606--24261656 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
24261596 CCCAAGAATC
*
24261606 TCGCGGCATGAACATGTATAGAATTA
1 TCGCGGCATGAACATGTACAGAATTA
* * *
24261632 TCGCTGCATGAACGTGTCCAGAATT
1 TCGCGGCATGAACATGTACAGAATT
24261657 GGGCCCAGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
TCGCGGCATGAACATGTACAGAATTA
Found at i:24270468 original size:199 final size:200
Alignment explanation
Indices: 24270108--24270468 Score: 537
Period size: 199 Copynumber: 1.8 Consensus size: 200
24270098 TCTATTTACT
*
24270108 CTTAAATTTGTCATGTTTTGGTACTGATGTCGCTGTATAAGTAATTTCAGATTGCGTCCAAGATT
1 CTTAAATTTGTCATGTTTTGGTACTGATGTCGCTGCATAAGTAATTTCAGATTGCGTCCAAGATT
* * * * * * * * * *
24270173 GTTGTCGCATCTGACAGTTGTTCGGATAAGAACAGAAATGTGTGAGTTGTCCAGTTTGGTATAGC
66 GTCGCCGCATCTGACAGCTGTCCAGATAAGAACAGAAATGTGTGAGCTGTCCAATCTAGTATAAC
**
24270238 CAACTTGTACGACCAGTGACAGCTTGATTCTGATGAAAGGACACCTATACAAGGATAACTTGTAC
131 CAACTTGTACGACCAAAGACAGCTTGATTCTGATGAAAGGACACCTATACAAGGATAACTTGTAC
24270303 ATACC
196 ATACC
* * *
24270308 CTTAATTTTGTCATGTTTTGGTATTGATGTCGCTGCATAAGTAATTTCAGATTGCGTCCAGGATT
1 CTTAAATTTGTCATGTTTTGGTACTGATGTCGCTGCATAAGTAATTTCAGATTGCGTCCAAGATT
* *
24270373 -TCGCCAG-ATCTGATAGCTGTCCAGATAAGAATAGAAATGTGTGAGCTGTCCAATCTAGTATAA
66 GTCGCC-GCATCTGACAGCTGTCCAGATAAGAACAGAAATGTGTGAGCTGTCCAATCTAGTATAA
24270436 CCAACTTGTACGACCAAAGACAGCTTGATTCTG
130 CCAACTTGTACGACCAAAGACAGCTTGATTCTG
24270469 CAGAAAAATA
Statistics
Matches: 142, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
199 80 0.56
200 62 0.44
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (200 bp):
CTTAAATTTGTCATGTTTTGGTACTGATGTCGCTGCATAAGTAATTTCAGATTGCGTCCAAGATT
GTCGCCGCATCTGACAGCTGTCCAGATAAGAACAGAAATGTGTGAGCTGTCCAATCTAGTATAAC
CAACTTGTACGACCAAAGACAGCTTGATTCTGATGAAAGGACACCTATACAAGGATAACTTGTAC
ATACC
Found at i:24285872 original size:15 final size:14
Alignment explanation
Indices: 24285841--24285880 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
24285831 GTGCTTAAAA
24285841 AAAAGAAAAATGTT
1 AAAAGAAAAATGTT
* *
24285855 AAAAGAAAAGTTTGT
1 AAAAGAAAAATGT-T
24285870 AAAAGAAAAAT
1 AAAAGAAAAAT
24285881 ATTTTTTAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.20
Consensus pattern (14 bp):
AAAAGAAAAATGTT
Found at i:24288451 original size:560 final size:560
Alignment explanation
Indices: 24287390--24288484 Score: 2100
Period size: 560 Copynumber: 2.0 Consensus size: 560
24287380 CTTGAAAAGG
24287390 ACCATCGTCTTGTCGTAACAACTTGGATCTTTTTTGAGCTGGAACTCTTTCTTTTTGCATGTGAC
1 ACCATCGTCTTGTCGTAACAACTTGGATCTTTTTTGAGCTGGAACTCTTTCTTTTTGCATGTGAC
* *
24287455 GCCATACCCAATCTCCGGGTTCAAAGACTACTCGTTTACATCCTTGTTGGCTTTACTTGCATACT
66 ACCATAACCAATCTCCGGGTTCAAAGACTACTCGTTTACATCCTTGTTGGCTTTACTTGCATACT
24287520 GCTTGATCCTCTCCTTAATGTTCTCCCTTACTTTTTGGTGTAGATCTTTCACGAATTTAGCCTTC
131 GCTTGATCCTCTCCTTAATGTTCTCCCTTACTTTTTGGTGTAGATCTTTCACGAATTTAGCCTTC
24287585 TTCTTGCCATCTACATGCACAAGTTGATTAGAAGGTAAGGGAATTAAATCTAAAGAGTTAAAGGA
196 TTCTTGCCATCTACATGCACAAGTTGATTAGAAGGTAAGGGAATTAAATCTAAAGAGTTAAAGGA
*
24287650 TTAAAACCGTAAATAAAATCAAATGGTGAATGCTTGGTGGCCAAATGTACAGAACGGTTGTAAGC
261 TTAAAACCGTAAATAAAATCAAATGGTGAATGCTTGGTGGCCAAATGTACAGAACAGTTGTAAGC
24287715 AAACTTGATGTGTGGCAAGCATTCTTCCCATGTTTTCAAATTCTTTCGAATGACTGCTCTTAACA
326 AAACTTGATGTGTGGCAAGCATTCTTCCCATGTTTTCAAATTCTTTCGAATGACTGCTCTTAACA
24287780 AAGTAGAGAGTACTTGATTCACAACTTCAGTTTGGCCATCAGTTTGTGGGTGGCATGTCGTAGAA
391 AAGTAGAGAGTACTTGATTCACAACTTCAGTTTGGCCATCAGTTTGTGGGTGGCATGTCGTAGAA
*
24287845 AACAGTAACTTAGTACCAAGTTTGCTCCATAAGGTCCTCCAAAAGTGGCTAAGAAATTTAGCATC
456 AACAGTAACTTAGTACCAAGTTTGCTCCATAAGGTCCTCCAAAAGTGGCTAAGAAACTTAGCATC
*
24287910 GCGATCGGATACAATTGTTCATAGAAAATAGTAACTTAGT
521 ACGATCGGATACAATTGTTCATAGAAAATAGTAACTTAGT
24287950 ACCATCGTCTTGTCGTAACAACTTGGATCTTTTTTGAGCTGGAACTCTTTCTTTTTGCATGTGAC
1 ACCATCGTCTTGTCGTAACAACTTGGATCTTTTTTGAGCTGGAACTCTTTCTTTTTGCATGTGAC
24288015 ACCATAACCAATCTCCGGGTTCAAAGACTACTCGTTTACATCCTTGTTGGCTTTACTTGCATACT
66 ACCATAACCAATCTCCGGGTTCAAAGACTACTCGTTTACATCCTTGTTGGCTTTACTTGCATACT
*
24288080 GCTTGGTCCTCTCCTTAATGTTCTCCCTTACTTTTTGGTGTAGATCTTTCACGAATTTAGCCTTC
131 GCTTGATCCTCTCCTTAATGTTCTCCCTTACTTTTTGGTGTAGATCTTTCACGAATTTAGCCTTC
24288145 TTCTTGCCATCTACATGCACAAGTTGATTAGAAGGTAAGGGAATTAAATCTAAAGAGTTAAAGGA
196 TTCTTGCCATCTACATGCACAAGTTGATTAGAAGGTAAGGGAATTAAATCTAAAGAGTTAAAGGA
*
24288210 TTAAAACCGTAAATAAAATCAAATGGTGAATGCTTGGTGGCCGAATGTACAGAACAGTTGTAAGC
261 TTAAAACCGTAAATAAAATCAAATGGTGAATGCTTGGTGGCCAAATGTACAGAACAGTTGTAAGC
24288275 AAACTTGATGTGTGGCAAGCATTCTTCCCATGTTTTCAAATTCTTTCGAATGACTGCTCTTAACA
326 AAACTTGATGTGTGGCAAGCATTCTTCCCATGTTTTCAAATTCTTTCGAATGACTGCTCTTAACA
*
24288340 AGGTAGAGAGTACTTGATTCACAACTTCAGTTTGGCCATCAGTTTGTGGGTGGCATGTCGTAGAA
391 AAGTAGAGAGTACTTGATTCACAACTTCAGTTTGGCCATCAGTTTGTGGGTGGCATGTCGTAGAA
* *
24288405 AACAGTAACTTAGTACCAAGTTTGCTCTATAAGGTCCTCTAAAAGTGGCTAAGAAACTTAGCATC
456 AACAGTAACTTAGTACCAAGTTTGCTCCATAAGGTCCTCCAAAAGTGGCTAAGAAACTTAGCATC
24288470 ACGATCGGATACAAT
521 ACGATCGGATACAAT
24288485 CCTAGTACTC
Statistics
Matches: 525, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
560 525 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (560 bp):
ACCATCGTCTTGTCGTAACAACTTGGATCTTTTTTGAGCTGGAACTCTTTCTTTTTGCATGTGAC
ACCATAACCAATCTCCGGGTTCAAAGACTACTCGTTTACATCCTTGTTGGCTTTACTTGCATACT
GCTTGATCCTCTCCTTAATGTTCTCCCTTACTTTTTGGTGTAGATCTTTCACGAATTTAGCCTTC
TTCTTGCCATCTACATGCACAAGTTGATTAGAAGGTAAGGGAATTAAATCTAAAGAGTTAAAGGA
TTAAAACCGTAAATAAAATCAAATGGTGAATGCTTGGTGGCCAAATGTACAGAACAGTTGTAAGC
AAACTTGATGTGTGGCAAGCATTCTTCCCATGTTTTCAAATTCTTTCGAATGACTGCTCTTAACA
AAGTAGAGAGTACTTGATTCACAACTTCAGTTTGGCCATCAGTTTGTGGGTGGCATGTCGTAGAA
AACAGTAACTTAGTACCAAGTTTGCTCCATAAGGTCCTCCAAAAGTGGCTAAGAAACTTAGCATC
ACGATCGGATACAATTGTTCATAGAAAATAGTAACTTAGT
Found at i:24324387 original size:104 final size:99
Alignment explanation
Indices: 24324264--24324450 Score: 277
Period size: 104 Copynumber: 1.8 Consensus size: 99
24324254 TCAGATATAA
* * *
24324264 TTTTTTTTATTTTGGGACACTGATTGTCGACA-TCAATTTTATCAAATTTTAAAAAAATATATTG
1 TTTTTTTTATTTTGAGACACTGATGGTCGACACT-AACTTTATCAAA-TTT-AAAAAAT-TATT-
24324328 TTTTTATTTTGGGACACTGATGGCCAGTACCAATTAAAT
61 TTTTTATTTTGGGACACTGATGGCCAGTACCAATTAAAT
*
24324367 TTTTATTTTATTTTGAGACACTGATGGTTGACACTAACTTTATCAAATTTAAAAAATTATTTTTT
1 TTTT-TTTTATTTTGAGACACTGATGGTCGACACTAACTTTATCAAATTTAAAAAATTATTTTTT
24324432 TATTTTGGGACACTGATGG
65 TATTTTGGGACACTGATGG
24324451 TCGACACCAA
Statistics
Matches: 78, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
100 23 0.29
101 4 0.05
102 7 0.09
103 7 0.09
104 36 0.46
105 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (99 bp):
TTTTTTTTATTTTGAGACACTGATGGTCGACACTAACTTTATCAAATTTAAAAAATTATTTTTTT
ATTTTGGGACACTGATGGCCAGTACCAATTAAAT
Found at i:24324438 original size:57 final size:58
Alignment explanation
Indices: 24324363--24324512 Score: 187
Period size: 57 Copynumber: 2.6 Consensus size: 58
24324353 AGTACCAATT
* * * *
24324363 AAATT-TTTATTTTATTTTGAGACACTGATGGTTGACACTAACTTTATCAAAT-TTAAA
1 AAATTATTT-TTTTATTTTGGGACACTGATGGTCGACACCAACTTTATCAAATATGAAA
*
24324420 AAATTATTTTTTTATTTTGGGACACTGATGGTCGACACCAACTTTATCAGATATGAAA
1 AAATTATTTTTTTATTTTGGGACACTGATGGTCGACACCAACTTTATCAAATATGAAA
** *
24324478 AGTTTATTTTTTTTGGTTTTGGGACACTGATGGTC
1 AAATTA-TTTTTTT-ATTTTGGGACACTGATGGTC
24324513 AGTTGACCGC
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
57 44 0.54
58 11 0.14
59 7 0.09
60 19 0.23
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.43
Consensus pattern (58 bp):
AAATTATTTTTTTATTTTGGGACACTGATGGTCGACACCAACTTTATCAAATATGAAA
Found at i:24324731 original size:33 final size:31
Alignment explanation
Indices: 24324688--24324753 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
24324678 ATTAGTAATC
24324688 TTTTTAGGGTTTATAATATGAAAGAAAAATAAAA
1 TTTTTAGGGTTT-TAA-ATGAAAG-AAAATAAAA
* *
24324722 TTTTT-GGGTTTTAAATTAAAGAACATAAAA
1 TTTTTAGGGTTTTAAATGAAAGAAAATAAAA
24324752 TT
1 TT
24324754 AAAGAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 10 0.33
31 6 0.20
32 3 0.10
33 6 0.20
34 5 0.17
ACGTcount: A:0.45, C:0.02, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTTTAGGGTTTTAAATGAAAGAAAATAAAA
Found at i:24325663 original size:69 final size:69
Alignment explanation
Indices: 24325574--24325730 Score: 197
Period size: 69 Copynumber: 2.3 Consensus size: 69
24325564 CCCTGTCATG
* * * * * *
24325574 ACGTAAAACACAGTCCACTCCTTAGTGTGTTTTCCAAGCGTTGTCGCAACATATAAGAGCTGTGT
1 ACGTAAAAGACACTCTACTCCTTAGTGTGTTTTCCAAGCGTTGTCGCAACACACAAGAGCCGTGT
*
24325639 CTCA
66 CGCA
* * * *
24325643 ACGTAGAAGACACTCTACTCCTTAGTGTGTTTTCCAGGCGTTGTCGCGACACACAGGAGCCGTGT
1 ACGTAAAAGACACTCTACTCCTTAGTGTGTTTTCCAAGCGTTGTCGCAACACACAAGAGCCGTGT
24325708 CGCA
66 CGCA
* *
24325712 ACGTAAAAGATAGTCTACT
1 ACGTAAAAGACACTCTACT
24325731 GTAGCCCCCT
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
69 74 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (69 bp):
ACGTAAAAGACACTCTACTCCTTAGTGTGTTTTCCAAGCGTTGTCGCAACACACAAGAGCCGTGT
CGCA
Found at i:24327158 original size:21 final size:21
Alignment explanation
Indices: 24327132--24327183 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
24327122 TGACTTGGTT
24327132 TGGGTTTGGTCTTGGTTCAAA
1 TGGGTTTGGTCTTGGTTCAAA
* **
24327153 TGGGTTTGGACTTGGTTCTCA
1 TGGGTTTGGTCTTGGTTCAAA
24327174 TGGGTTTGGT
1 TGGGTTTGGT
24327184 TCACTTTGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.10, C:0.10, G:0.37, T:0.44
Consensus pattern (21 bp):
TGGGTTTGGTCTTGGTTCAAA
Found at i:24333191 original size:7 final size:7
Alignment explanation
Indices: 24333156--24333215 Score: 59
Period size: 7 Copynumber: 8.7 Consensus size: 7
24333146 AAGTCAATGA
24333156 TCAA-AG
1 TCAACAG
24333162 TCAACAG
1 TCAACAG
* *
24333169 TTAACGG
1 TCAACAG
*
24333176 TCACCAG
1 TCAACAG
*
24333183 TCAATAG
1 TCAACAG
*
24333190 TCAACGG
1 TCAACAG
24333197 TCAACAG
1 TCAACAG
*
24333204 TCAACGG
1 TCAACAG
24333211 TCAAC
1 TCAAC
24333216 GATCAACGGC
Statistics
Matches: 42, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
6 4 0.10
7 38 0.90
ACGTcount: A:0.37, C:0.27, G:0.18, T:0.18
Consensus pattern (7 bp):
TCAACAG
Found at i:24333216 original size:7 final size:7
Alignment explanation
Indices: 24333161--24333224 Score: 56
Period size: 7 Copynumber: 9.1 Consensus size: 7
24333151 AATGATCAAA
*
24333161 GTCAACA
1 GTCAACG
*
24333168 GTTAACG
1 GTCAACG
* *
24333175 GTCACCA
1 GTCAACG
**
24333182 GTCAATA
1 GTCAACG
24333189 GTCAACG
1 GTCAACG
*
24333196 GTCAACA
1 GTCAACG
24333203 GTCAACG
1 GTCAACG
24333210 GTCAACG
1 GTCAACG
*
24333217 ATCAACG
1 GTCAACG
24333224 G
1 G
24333225 CCGATCAAAG
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
7 44 1.00
ACGTcount: A:0.34, C:0.27, G:0.22, T:0.17
Consensus pattern (7 bp):
GTCAACG
Found at i:24333221 original size:21 final size:21
Alignment explanation
Indices: 24333147--24333222 Score: 82
Period size: 21 Copynumber: 3.7 Consensus size: 21
24333137 TTTTCAAAAA
*
24333147 AGTCAATGATCAA-AGTCAAC
1 AGTCAACGATCAACAGTCAAC
* * * *
24333167 AGTTAACGGTCACCAGTCAAT
1 AGTCAACGATCAACAGTCAAC
*
24333188 AGTCAACGGTCAACAGTCAAC
1 AGTCAACGATCAACAGTCAAC
*
24333209 GGTCAACGATCAAC
1 AGTCAACGATCAAC
24333223 GGCCGATCAA
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
20 9 0.20
21 36 0.80
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.18
Consensus pattern (21 bp):
AGTCAACGATCAACAGTCAAC
Found at i:24333243 original size:22 final size:22
Alignment explanation
Indices: 24333218--24333266 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
24333208 CGGTCAACGA
*
24333218 TCAACGGCCGATCAAAGGTTGG
1 TCAACGGCCGATCAAAGGTCGG
* * *
24333240 TCAATGGCTGATCAACGGTCGG
1 TCAACGGCCGATCAAAGGTCGG
24333262 TCAAC
1 TCAAC
24333267 AGTTTAACTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (22 bp):
TCAACGGCCGATCAAAGGTCGG
Found at i:24333307 original size:21 final size:21
Alignment explanation
Indices: 24333281--24333332 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
24333271 TAACTTGGTT
24333281 TGGGTTTGGTCTTGGTTCAAA
1 TGGGTTTGGTCTTGGTTCAAA
* **
24333302 TGGGTTTGGACTTGGTTCTCA
1 TGGGTTTGGTCTTGGTTCAAA
24333323 TGGGTTTGGT
1 TGGGTTTGGT
24333333 TCACTTTGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.10, C:0.10, G:0.37, T:0.44
Consensus pattern (21 bp):
TGGGTTTGGTCTTGGTTCAAA
Found at i:24334233 original size:8 final size:9
Alignment explanation
Indices: 24334211--24334235 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
24334201 TAAAAAGAAT
24334211 CTTTTTACA
1 CTTTTTACA
24334220 CTTTTTACA
1 CTTTTTACA
24334229 CTTTTTA
1 CTTTTTA
24334236 TTTATCATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60
Consensus pattern (9 bp):
CTTTTTACA
Found at i:24341284 original size:25 final size:25
Alignment explanation
Indices: 24341244--24341304 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
24341234 ACACGAAAAA
* *
24341244 TCAATTTATA-CCTTCTCAACTTCT
1 TCAATTTATATTCTTCTAAACTTCT
* *
24341268 TTAATTTCTATTCTTCTAAACTTCT
1 TCAATTTATATTCTTCTAAACTTCT
24341293 TCAATTTATATT
1 TCAATTTATATT
24341305 GCTGCAACTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 8 0.27
25 22 0.73
ACGTcount: A:0.26, C:0.21, G:0.00, T:0.52
Consensus pattern (25 bp):
TCAATTTATATTCTTCTAAACTTCT
Found at i:24344827 original size:17 final size:17
Alignment explanation
Indices: 24344801--24344833 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24344791 AAGTAGTTAC
*
24344801 AAGAATATGAAAGGTTG
1 AAGAAGATGAAAGGTTG
24344818 AAGAAGATGAAAGGTT
1 AAGAAGATGAAAGGTT
24344834 AAAGGTCAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.21
Consensus pattern (17 bp):
AAGAAGATGAAAGGTTG
Found at i:24350284 original size:2 final size:2
Alignment explanation
Indices: 24350277--24350321 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
24350267 ATTCATAACA
24350277 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24350319 AT A
1 AT A
24350322 AAAAGATGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:24351598 original size:62 final size:62
Alignment explanation
Indices: 24351456--24351633 Score: 250
Period size: 62 Copynumber: 2.8 Consensus size: 62
24351446 ACGCTAGAAG
* * * * * * *
24351456 GCAATTTAAAGGGACCAAAGATGAAGTTAAACC-AACGCTGGAAAGCGATTAAAATAAAGCAAAA
1 GCAATTTAAAGGGGCCAAAGATGAAATTAAACCAAAAG-T--AAAAC-AATAGAATAAAACAAAA
24351520 A
62 A
24351521 GCAATTTAAAGGGGCCAAAGATGAAATTAAACCAAAAGTAAAACAATAGAATAAAACAAAAA
1 GCAATTTAAAGGGGCCAAAGATGAAATTAAACCAAAAGTAAAACAATAGAATAAAACAAAAA
24351583 GCAATTTAAAGGGGCCAAAGATGAAATTAAACCAAAAGTAAAACAATAGAA
1 GCAATTTAAAGGGGCCAAAGATGAAATTAAACCAAAAGTAAAACAATAGAA
24351634 GGAGGGCTTG
Statistics
Matches: 105, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
62 66 0.63
63 4 0.04
65 32 0.30
66 3 0.03
ACGTcount: A:0.55, C:0.12, G:0.17, T:0.15
Consensus pattern (62 bp):
GCAATTTAAAGGGGCCAAAGATGAAATTAAACCAAAAGTAAAACAATAGAATAAAACAAAAA
Found at i:24353942 original size:18 final size:18
Alignment explanation
Indices: 24353919--24353957 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
24353909 TATTATTAAG
24353919 GTTCACAC-AATAACATAA
1 GTTCACACAAAT-ACATAA
*
24353937 GTTCACATAAATACATAA
1 GTTCACACAAATACATAA
24353955 GTT
1 GTT
24353958 TGCATAACGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.28
Consensus pattern (18 bp):
GTTCACACAAATACATAA
Found at i:24354761 original size:6 final size:6
Alignment explanation
Indices: 24354750--24354778 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
24354740 ATGTCTTATG
24354750 CTTGTT CTTGTT CTTGTT CTTGTT CTTGT
1 CTTGTT CTTGTT CTTGTT CTTGTT CTTGT
24354779 ATTTACACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.17, G:0.17, T:0.66
Consensus pattern (6 bp):
CTTGTT
Found at i:24367163 original size:282 final size:282
Alignment explanation
Indices: 24366553--24367951 Score: 2395
Period size: 282 Copynumber: 5.0 Consensus size: 282
24366543 TCGAGTTTTA
* * * *
24366553 GATGACTTTTTTCACTAACTTCTTGTTGGG-TAGGTGCCAACCTTTGTGTGTAAGTTAGTGTAGC
1 GATGACTTTCTTCACCAACTTCTTGTTGGGCT-GGTGCCAACCTTTGTGTGGAAGTTGGTGTAGC
* *
24366617 CGTCAAATCTCGTGATTTTCTCTTCCCCTATTTTAGTTATTTAGCACGAAGCTCCCTATATTGTT
65 CGTCAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAGCTCCCCATATTGTT
*
24366682 GGAAGAGGGTGTCACCAATGACACTCCTTGATGACTTCAATGTTTGCTTT-TAGATGTCTTAGGC
130 GGAAGAGGGTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGC
* *
24366746 ACTCCTACCCATCTACATAAAGCCATGACTAAGTGAGAAAGAATATCCCTACCTTTTGGCTTCCC
195 ACTCCTACCCATATACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCC
24366811 ACATATCGAATCATATTTTGGTG
260 ACATATCGAATCATATTTTGGTG
* *
24366834 GATGACTTTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACCTTTGTGTGGAAGTTAGTGTAGTC
1 GATGACTTTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACCTTTGTGTGGAAGTTGGTGTAGCC
* *
24366899 GTAAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAGCTCCTCATATTGTTG
66 GTCAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAGCTCCCCATATTGTTG
24366964 GAAGAGGGTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGCA
131 GAAGAGGGTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGCA
* * *
24367029 CTCCAACCCATATACATAAAGCTATGACTAAGTGAGAAAGAATATTCCCACCTTTTGGCTTCCCA
196 CTCCTACCCATATACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCA
24367094 CATATCGAATCATATTTTGGTG
261 CATATCGAATCATATTTTGGTG
*
24367116 GATGACTTTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACCTTTGTGTGAAAGTTGGTGTAGCC
1 GATGACTTTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACCTTTGTGTGGAAGTTGGTGTAGCC
* ** * *
24367181 GTCAAATCTCGTGA---T-T-TT---CTCTTTTAGTTACTTAAAACGAAGCTCCCCTTATTATTG
66 GTCAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAGCTCCCCATATTGTTG
24367238 GAAGAGGGTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGCA
131 GAAGAGGGTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGCA
24367303 CTCCTACCCATATACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCA
196 CTCCTACCCATATACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCA
*
24367368 CATATCGAATCATATTTTGATG
261 CATATCGAATCATATTTTGGTG
* *
24367390 GATGACTCTCTTCACCAACTTCTTGTTGGGTTGGTGCCAACCTTTGTGTGGAAGTTGGTGTAGCC
1 GATGACTTTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACCTTTGTGTGGAAGTTGGTGTAGCC
24367455 GTCAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAGCTCCCCATATTGTTG
66 GTCAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAGCTCCCCATATTGTTG
* *
24367520 GAAGAGGGTGTCTCCAATGACACTCCTTGACGACTGCAATGTTTGCTTTGTAGATGTCTTAGGCA
131 GAAGAGGGTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGCA
*
24367585 CTCCTACCCATATACATAAAGCCATGACTAAGTGTGAAAGAATATCCCCACCTTTTGGCTTCCCA
196 CTCCTACCCATATACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCA
*
24367650 CATATCGAATCATATTTTGATG
261 CATATCGAATCATATTTTGGTG
* *
24367672 GATGACTCTCTTCACCAACTTCTTGTTGGGTTGGTGCCAACCTTTGTGTGGAAGTTGGTGTAGCC
1 GATGACTTTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACCTTTGTGTGGAAGTTGGTGTAGCC
24367737 GTCAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAGCTCCCCATATTGTTG
66 GTCAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAGCTCCCCATATTGTTG
* *
24367802 GAAGAGGGTGTCTCCAATGACACTCCTTGACGACTGCAATGTTTGCTTTGTAGATGTCTTAGGCA
131 GAAGAGGGTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGCA
* * *
24367867 CTCCTACCCATCTACATAAAGCTACGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCA
196 CTCCTACCCATATACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCA
24367932 CATATCGAATCATATTTTGG
261 CATATCGAATCATATTTTGG
24367952 AGTATCTACT
Statistics
Matches: 1064, Mismatches: 44, Indels: 19
0.94 0.04 0.02
Matches are distributed among these distances:
274 257 0.24
277 3 0.00
278 2 0.00
279 3 0.00
281 168 0.16
282 631 0.59
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (282 bp):
GATGACTTTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACCTTTGTGTGGAAGTTGGTGTAGCC
GTCAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAGCTCCCCATATTGTTG
GAAGAGGGTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGCA
CTCCTACCCATATACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCA
CATATCGAATCATATTTTGGTG
Found at i:24367614 original size:556 final size:556
Alignment explanation
Indices: 24366553--24367950 Score: 2325
Period size: 556 Copynumber: 2.5 Consensus size: 556
24366543 TCGAGTTTTA
* * * *
24366553 GATGACTTTTTTCACTAACTTCTTGTTGGGTAGGTGCCAACCTTTGTGTGTAAGTTAGTGTAGCC
1 GATGACTTTCTTCACCAACTTCTTGTTGGGT-GGTGCCAACCTTTGTGTGAAAGTTGGTGTAGCC
24366618 GTCAAATCTCGTGATTTTCTCTTCCCCTATTTTAGTTATTTAGCACGAAGCT-CCCTATATTGTT
65 GTCAAATCTCGTGATTTT-TC-T---C--TTTTAGTTATTTAGCACGAAGCTCCCCT-TATTGTT
*
24366682 GGAAGAGGGTGTCACCAATGACACTCCTTGATGACTTCAATGTTTGCTTT-TAGATGTCTTAGGC
122 GGAAGAGGGTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGC
*
24366746 ACTCCTACCCATCTACATAAAGCCATGACTAAGTGAGAAAGAATATCCCTACCTTTTGGCTTCCC
187 ACTCCTACCCATCTACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCC
* *
24366811 ACATATCGAATCATATTTTGGTGGATGACTTTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACC
252 ACATATCGAATCATATTTTGATGGATGACTCTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACC
*
24366876 TTTGTGTGGAAGTTAGTGTAGTCGTAAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTA
317 TTTGTGTGGAAGTTAGTGTAGCCGTAAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTA
* *
24366941 GCACGAAGCTCCTCATATTGTTGGAAGAGGGTGTCACCAATGACACTCCTTGACGACTTCAATGT
382 GCACGAAGCTCCCCATATTGTTGGAAGAGGGTGTCACCAATGACACTCCTTGACGACTGCAATGT
*
24367006 TTGCTTTGTAGATGTCTTAGGCACTCCAACCCATATACATAAAGCTATGACTAAGTGAGAAAGAA
447 TTGCTTTGTAGATGTCTTAGGCACTCCAACCCATATACATAAAGCCATGACTAAGTGAGAAAGAA
* *
24367071 TATTCCCACCTTTTGGCTTCCCACATATCGAATCATATTTTGGTG
512 TATCCCCACCTTTTGGCTTCCCACATATCGAATCATATTTTGATG
24367116 GATGACTTTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACCTTTGTGTGAAAGTTGGTGTAGCC
1 GATGACTTTCTTCACCAACTTCTTGTTGGG-TGGTGCCAACCTTTGTGTGAAAGTTGGTGTAGCC
* ** *
24367181 GTCAAATCTCGTGA-TTTTCTCTTTTAGTTACTTAAAACGAAGCTCCCCTTATTATTGGAAGAGG
65 GTCAAATCTCGTGATTTTTCTCTTTTAGTTATTTAGCACGAAGCTCCCCTTATTGTTGGAAGAGG
24367245 GTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGCACTCCTAC
130 GTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGCACTCCTAC
*
24367310 CCATATACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCACATATCG
195 CCATCTACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCACATATCG
*
24367375 AATCATATTTTGATGGATGACTCTCTTCACCAACTTCTTGTTGGGTTGGTGCCAACCTTTGTGTG
260 AATCATATTTTGATGGATGACTCTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACCTTTGTGTG
* *
24367440 GAAGTTGGTGTAGCCGTCAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAG
325 GAAGTTAGTGTAGCCGTAAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAG
*
24367505 CTCCCCATATTGTTGGAAGAGGGTGTCTCCAATGACACTCCTTGACGACTGCAATGTTTGCTTTG
390 CTCCCCATATTGTTGGAAGAGGGTGTCACCAATGACACTCCTTGACGACTGCAATGTTTGCTTTG
* *
24367570 TAGATGTCTTAGGCACTCCTACCCATATACATAAAGCCATGACTAAGTGTGAAAGAATATCCCCA
455 TAGATGTCTTAGGCACTCCAACCCATATACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCA
24367635 CCTTTTGGCTTCCCACATATCGAATCATATTTTGATG
520 CCTTTTGGCTTCCCACATATCGAATCATATTTTGATG
* *
24367672 GATGACTCTCTTCACCAACTTCTTGTTGGGTTGGTGCCAACCTTTGTGTGGAAGTTGGTGTAGCC
1 GATGACTTTCTTCACCAACTTCTTGTTGGG-TGGTGCCAACCTTTGTGTGAAAGTTGGTGTAGCC
*
24367737 GTCAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAGCTCCCCATATTGTTG
65 GTCAAATCTCGTGA--TT-T-TT---CTCTTTTAGTTATTTAGCACGAAGCTCCCCTTATTGTTG
* *
24367802 GAAGAGGGTGTCTCCAATGACACTCCTTGACGACTGCAATGTTTGCTTTGTAGATGTCTTAGGCA
123 GAAGAGGGTGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGCA
* *
24367867 CTCCTACCCATCTACATAAAGCTACGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCA
188 CTCCTACCCATCTACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCA
24367932 CATATCGAATCATATTTTG
253 CATATCGAATCATATTTTG
24367951 GAGTATCTAC
Statistics
Matches: 786, Mismatches: 38, Indels: 21
0.93 0.04 0.02
Matches are distributed among these distances:
555 75 0.10
556 448 0.57
557 1 0.00
559 1 0.00
560 2 0.00
561 4 0.01
562 3 0.00
563 73 0.09
564 179 0.23
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (556 bp):
GATGACTTTCTTCACCAACTTCTTGTTGGGTGGTGCCAACCTTTGTGTGAAAGTTGGTGTAGCCG
TCAAATCTCGTGATTTTTCTCTTTTAGTTATTTAGCACGAAGCTCCCCTTATTGTTGGAAGAGGG
TGTCACCAATGACACTCCTTGACGACTTCAATGTTTGCTTTGTAGATGTCTTAGGCACTCCTACC
CATCTACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCACCTTTTGGCTTCCCACATATCGA
ATCATATTTTGATGGATGACTCTCTTCACCAACTTCTTGTTGGGCTGGTGCCAACCTTTGTGTGG
AAGTTAGTGTAGCCGTAAAATCTCGTGATTTTCTCTTCCCCTCTTTTAGTTATTTAGCACGAAGC
TCCCCATATTGTTGGAAGAGGGTGTCACCAATGACACTCCTTGACGACTGCAATGTTTGCTTTGT
AGATGTCTTAGGCACTCCAACCCATATACATAAAGCCATGACTAAGTGAGAAAGAATATCCCCAC
CTTTTGGCTTCCCACATATCGAATCATATTTTGATG
Found at i:24368932 original size:62 final size:62
Alignment explanation
Indices: 24368853--24368977 Score: 205
Period size: 62 Copynumber: 2.0 Consensus size: 62
24368843 AATTGTGCCT
24368853 AAATATGTCACCACATGAATACTTCCAGATTGCAACAAGGACTTTACGCTGCTAACATATCC
1 AAATATGTCACCACATGAATACTTCCAGATTGCAACAAGGACTTTACGCTGCTAACATATCC
* * * * *
24368915 AAATATGTCACCGCATGACTACTTCTAGATTGCAACAGGGACTTTATGCTGCTAACATATCC
1 AAATATGTCACCACATGAATACTTCCAGATTGCAACAAGGACTTTACGCTGCTAACATATCC
24368977 A
1 A
24368978 GAAGCACCAA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (62 bp):
AAATATGTCACCACATGAATACTTCCAGATTGCAACAAGGACTTTACGCTGCTAACATATCC
Found at i:24371590 original size:18 final size:18
Alignment explanation
Indices: 24371557--24371591 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24371547 TCACATTTTG
**
24371557 ATCAGATGCAGTCACATA
1 ATCAGATGCAAACACATA
24371575 ATCAGATGCAAACACAT
1 ATCAGATGCAAACACAT
24371592 GCTCGAATGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.23, G:0.14, T:0.20
Consensus pattern (18 bp):
ATCAGATGCAAACACATA
Found at i:24377194 original size:18 final size:17
Alignment explanation
Indices: 24377167--24377200 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
24377157 ACCATCGAAG
*
24377167 AAAGAGAAAGGCAAGGC
1 AAAGAGAAAGACAAGGC
24377184 AAAGAAGAAAGACAAGG
1 AAAG-AGAAAGACAAGG
24377201 AATCCCATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.59, C:0.09, G:0.32, T:0.00
Consensus pattern (17 bp):
AAAGAGAAAGACAAGGC
Found at i:24379925 original size:123 final size:123
Alignment explanation
Indices: 24379704--24380059 Score: 561
Period size: 123 Copynumber: 2.9 Consensus size: 123
24379694 CTTTTTATTC
*
24379704 TAATATCTCATATTAAAATGGAAATATATAT-CTTTAGAGAAATATATGGAAGGTTTATTAAAAC
1 TAATATCTCATATTAAAAT-GAAA-ATAT-TCCTTTAAAGAAATATATGGAAGGTTTATTAAAAC
24379768 ATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCAATTTCCTTTTATA
63 ATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCAATTTCCTTTTATA
* *
24379829 TAATATCTCATATTAAAATGAAAATATTCCTTTAAAGGAATATATGGAAGGTTTATTAAAACATA
1 TAATATCTCATATTAAAATGAAAATATTCCTTTAAAGAAATATATGGAAGGTTTATTAAAACATT
* * *
24379894 ATATCTTTTTCAAAAGGAAATTAACTTCCATGTTTTTAATATTCAATTTCCTTTTATA
66 ATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCAATTTCCTTTTATA
* * * * *
24379952 TAATTTTTAATATTAAAATGGAAATATTCCTTTAAAAAAATATATGGAAGGTTTATTAAAACATT
1 TAATATCTCATATTAAAATGAAAATATTCCTTTAAAGAAATATATGGAAGGTTTATTAAAACATT
* *
24380017 ATATCCTTTCCAAAATGATATTAACTTCCATGCTTTTAATATT
66 ATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATT
24380060 TAACGAAATC
Statistics
Matches: 212, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
122 1 0.00
123 188 0.89
124 4 0.02
125 19 0.09
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (123 bp):
TAATATCTCATATTAAAATGAAAATATTCCTTTAAAGAAATATATGGAAGGTTTATTAAAACATT
ATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCAATTTCCTTTTATA
Found at i:24380198 original size:106 final size:107
Alignment explanation
Indices: 24379989--24380209 Score: 311
Period size: 106 Copynumber: 2.1 Consensus size: 107
24379979 TCCTTTAAAA
*
24379989 AAATATATGGAAGGTTTATTAAAACATTATATCCTTTCCAAAATGATATTAACTTCCATGCTTTT
1 AAAT-TATGGAAGGTTTATTAAAACATTATATCCTTTCCAAAATGATATTAACTTCCATGATTTT
*
24380054 AATATTTAACGAAATCATTATAATTAATAATGATAATTACATT
65 AATATTTAACGAAATAATTATAATTAATAATGATAATTACATT
* * * *
24380097 AAATTATGGAAGGTTTATTTAAACATTATATCCTTTCCCAAA-GATTATTAATTTCTAT-ATTTT
1 AAATTATGGAAGGTTTATTAAAACATTATATCCTTTCCAAAATGA-TATTAACTTCCATGATTTT
* * * *
24380160 AATATTTAATGAAATAATTATACTTAATAATTATAATTACGTT
65 AATATTTAACGAAATAATTATAATTAATAATGATAATTACATT
*
24380203 GAATTAT
1 AAATTAT
24380210 ATTCAGTAAA
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
106 50 0.50
107 47 0.47
108 4 0.04
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.43
Consensus pattern (107 bp):
AAATTATGGAAGGTTTATTAAAACATTATATCCTTTCCAAAATGATATTAACTTCCATGATTTTA
ATATTTAACGAAATAATTATAATTAATAATGATAATTACATT
Found at i:24412757 original size:23 final size:22
Alignment explanation
Indices: 24412721--24412764 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
24412711 TTAATATTTC
*
24412721 ATTAAATAATTTGGGTTGAATTA
1 ATTAAATAAATTGGGTT-AATTA
*
24412744 ATTAATTAAATTGGGTTAATT
1 ATTAAATAAATTGGGTTAATT
24412765 TTATTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (22 bp):
ATTAAATAAATTGGGTTAATTA
Found at i:24417432 original size:17 final size:17
Alignment explanation
Indices: 24417409--24417459 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
24417399 CCAATGCACT
*
24417409 AAAATACAATAAAAATG
1 AAAATACAATAACAATG
* *
24417426 GAAATACAATGACAATG
1 AAAATACAATAACAATG
*
24417443 AAAATGCAATAACAATG
1 AAAATACAATAACAATG
24417460 CTTACTAACA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.61, C:0.10, G:0.12, T:0.18
Consensus pattern (17 bp):
AAAATACAATAACAATG
Found at i:24417457 original size:23 final size:23
Alignment explanation
Indices: 24417401--24417459 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
24417391 CATTGTCCCC
*
24417401 AATGCACTAA-AAT-ACAATAAA
1 AATGCAATAACAATGACAATAAA
* *
24417422 AATGGAA-ATACAATGACAATGAA
1 AATGCAATA-ACAATGACAATAAA
24417445 AATGCAATAACAATG
1 AATGCAATAACAATG
24417460 CTTACTAACA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
20 1 0.03
21 6 0.20
22 3 0.10
23 19 0.63
24 1 0.03
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (23 bp):
AATGCAATAACAATGACAATAAA
Found at i:24419742 original size:11 final size:11
Alignment explanation
Indices: 24419721--24419752 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
24419711 AAACTTAAAC
24419721 AAAAGTAAAAAT
1 AAAA-TAAAAAT
24419733 AAAATAAAAAT
1 AAAATAAAAAT
24419744 AAAATAAAA
1 AAAATAAAA
24419753 TTACGTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:24433403 original size:16 final size:16
Alignment explanation
Indices: 24433378--24433415 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
24433368 TACCCATTAA
*
24433378 AATA-TTATAACTTAT
1 AATACTTATAACTCAT
24433393 AATACTTATAACTCAT
1 AATACTTATAACTCAT
24433409 AATACTT
1 AATACTT
24433416 TTGAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (16 bp):
AATACTTATAACTCAT
Found at i:24445128 original size:21 final size:21
Alignment explanation
Indices: 24445096--24445155 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
24445086 AATAGTGCAA
* *
24445096 ACTTCTACCGATACATGTGAC
1 ACTTCTATCGATACAAGTGAC
*
24445117 AGTTCTATCGATACAAGTGAC
1 ACTTCTATCGATACAAGTGAC
* *
24445138 TCTTCTATCGAAACAAGT
1 ACTTCTATCGATACAAGT
24445156 CTTACTTCTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (21 bp):
ACTTCTATCGATACAAGTGAC
Found at i:24445960 original size:61 final size:61
Alignment explanation
Indices: 24445849--24446125 Score: 387
Period size: 61 Copynumber: 4.6 Consensus size: 61
24445839 TTCGCGTTTG
* * * * * *
24445849 ATACTCACGATGACATAGAGTCATCGGAC-CTATAATCCATAATAGGATTCATTTCATTTA
1 ATACTCACGATAACACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
**
24445909 ATACTCATAATGAA-ACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
1 ATACTCACGAT-AACACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
* ** *
24445970 ATTCTCACGATAACACAAAGTCATTAGACCTTTTAATCCGTAATAGGATTCATTTCATTTA
1 ATACTCACGATAACACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
* *
24446031 ATACTCATGATGACACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
1 ATACTCACGATAACACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
* *
24446092 ATACTCACGATAACATAAAGTCATCGGACCTTTT
1 ATACTCACGATAACACAAAGTCATCGGACATTTT
24446126 TGCATTTACG
Statistics
Matches: 190, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
60 24 0.13
61 166 0.87
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (61 bp):
ATACTCACGATAACACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
Found at i:24446026 original size:122 final size:122
Alignment explanation
Indices: 24445849--24446125 Score: 439
Period size: 122 Copynumber: 2.3 Consensus size: 122
24445839 TTCGCGTTTG
* * * * *
24445849 ATACTCACGATGACATAGAGTCATCGGACC-TATAATCCATAATAGGATTCATTTCATTTAATAC
1 ATACTCACGATAACACAAAGTCATCAGACCTTTTAATCCATAATAGGATTCATTTCATTTAATAC
24445913 TCATAATGAAACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
66 TCATAATGAAACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
* * *
24445970 ATTCTCACGATAACACAAAGTCATTAGACCTTTTAATCCGTAATAGGATTCATTTCATTTAATAC
1 ATACTCACGATAACACAAAGTCATCAGACCTTTTAATCCATAATAGGATTCATTTCATTTAATAC
* *
24446035 TCATGATGACACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
66 TCATAATGAAACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
* *
24446092 ATACTCACGATAACATAAAGTCATCGGACCTTTT
1 ATACTCACGATAACACAAAGTCATCAGACCTTTT
24446126 TGCATTTACG
Statistics
Matches: 141, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
121 24 0.17
122 117 0.83
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (122 bp):
ATACTCACGATAACACAAAGTCATCAGACCTTTTAATCCATAATAGGATTCATTTCATTTAATAC
TCATAATGAAACAAAGTCATCGGACATTTTAATCCGTAATAGGATTCATTTCATTTA
Found at i:24446488 original size:19 final size:18
Alignment explanation
Indices: 24446447--24446484 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
24446437 CCTAAAATTT
24446447 TCTTTTTATTCAATCTAG
1 TCTTTTTATTCAATCTAG
24446465 TCTTTTTATTCAATCTAG
1 TCTTTTTATTCAATCTAG
24446483 TC
1 TC
24446485 CTTTCAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.18, G:0.05, T:0.55
Consensus pattern (18 bp):
TCTTTTTATTCAATCTAG
Found at i:24450588 original size:17 final size:17
Alignment explanation
Indices: 24450553--24450591 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
24450543 ATTATCATCA
*
24450553 CATTTTAATTATCCCTG
1 CATTTTAATTATCCATG
* *
24450570 CATTTTATTTATCGATG
1 CATTTTAATTATCCATG
24450587 CATTT
1 CATTT
24450592 GCATTGTAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.23, C:0.18, G:0.08, T:0.51
Consensus pattern (17 bp):
CATTTTAATTATCCATG
Found at i:24455482 original size:59 final size:60
Alignment explanation
Indices: 24455370--24455484 Score: 162
Period size: 60 Copynumber: 1.9 Consensus size: 60
24455360 ACTGATTATC
* * * *
24455370 TTAATATTAAATTAAATTTAATGTTTATTGTAGATAAATATTTTATTATTTTAATAAGAT
1 TTAATATTAAATTAAATCTAATATTTATTGTAGATAAATATTATATTAATTTAATAAGAT
*
24455430 TTAATATTAAATTTAATCTAATATTTATCT-T-GATAAATATTATATTAATTTAATA
1 TTAATATTAAATTAAATCTAATATTTAT-TGTAGATAAATATTATATTAATTTAATA
24455485 TTAAAGTGAT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 22 0.45
60 26 0.53
61 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (60 bp):
TTAATATTAAATTAAATCTAATATTTATTGTAGATAAATATTATATTAATTTAATAAGAT
Found at i:24455628 original size:25 final size:25
Alignment explanation
Indices: 24455596--24455644 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
24455586 TATAGAGAGA
*
24455596 AAATTCTCTAAAGAGATTTTTCTAG
1 AAATTCTCTAAAGAAATTTTTCTAG
*
24455621 AAATTCTCTAGAGAAATTTTTCTA
1 AAATTCTCTAAAGAAATTTTTCTA
24455645 ATTTACAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (25 bp):
AAATTCTCTAAAGAAATTTTTCTAG
Found at i:24463243 original size:27 final size:27
Alignment explanation
Indices: 24463152--24463255 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
24463142 TGAGGAGTAA
* * *
24463152 TCTGATTCTTGCTCGAAAGTGCGTTAT
1 TCTGATTCTGGCTCGAAAGAGCATTAT
* *
24463179 TCTGATTCTGACTCGAAAGAGCCTTAT
1 TCTGATTCTGGCTCGAAAGAGCATTAT
* *
24463206 TCCGATTCTGGCTCGAAAGAACATTAT
1 TCTGATTCTGGCTCGAAAGAGCATTAT
*
24463233 TCTGATTCTGGGCTCGTAAGAGC
1 TCTGATTCT-GGCTCGAAAGAGC
24463256 TAACCATTCT
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
27 54 0.83
28 11 0.17
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (27 bp):
TCTGATTCTGGCTCGAAAGAGCATTAT
Found at i:24463390 original size:24 final size:24
Alignment explanation
Indices: 24463237--24463389 Score: 229
Period size: 24 Copynumber: 6.4 Consensus size: 24
24463227 CATTATTCTG
24463237 ATTCTGGGCTCGTAAGAGCTAACC
1 ATTCTGGGCTCGTAAGAGCTAACC
** *
24463261 ATTCTGGGCTAATAAGAGCTAGCC
1 ATTCTGGGCTCGTAAGAGCTAACC
24463285 ATTCTGGGCTCGTAAGAGCTAACC
1 ATTCTGGGCTCGTAAGAGCTAACC
*
24463309 ATTCTAGGCTCGTAAGAGCTAACC
1 ATTCTGGGCTCGTAAGAGCTAACC
*
24463333 ATTTTGGGCTCGTAAGAGCTAA-C
1 ATTCTGGGCTCGTAAGAGCTAACC
*
24463356 ATTCTGGGCTTGTAAGAGCTAACC
1 ATTCTGGGCTCGTAAGAGCTAACC
24463380 -TATCTGGGCT
1 AT-TCTGGGCT
24463390 TTGTAAGCTT
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
23 22 0.19
24 94 0.81
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (24 bp):
ATTCTGGGCTCGTAAGAGCTAACC
Found at i:24473349 original size:24 final size:23
Alignment explanation
Indices: 24473306--24473350 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
24473296 TGTCCATTCC
24473306 CTCTCACCTCCTTATTTCTCCTT
1 CTCTCACCTCCTTATTTCTCCTT
*
24473329 CTCTTACCTTCCTT-TTCTCTCC
1 CTCTCACC-TCCTTATT-TCTCC
24473351 ACTTAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.07, C:0.44, G:0.00, T:0.49
Consensus pattern (23 bp):
CTCTCACCTCCTTATTTCTCCTT
Found at i:24475674 original size:37 final size:37
Alignment explanation
Indices: 24475633--24475717 Score: 98
Period size: 37 Copynumber: 2.3 Consensus size: 37
24475623 GGACATGTTC
* * *
24475633 ATGCAGCGACATTTCTGGGTGCAATTAAAGAATACTT
1 ATGCAGCGACAATCCTGGATGCAATTAAAGAATACTT
* * * *
24475670 ATGCAGTGATAATCCTGGATGCAATTGAAGAATATTT
1 ATGCAGCGACAATCCTGGATGCAATTAAAGAATACTT
*
24475707 ATGTAGCGACA
1 ATGCAGCGACA
24475718 GTCTTGGGTG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (37 bp):
ATGCAGCGACAATCCTGGATGCAATTAAAGAATACTT
Found at i:24475783 original size:37 final size:37
Alignment explanation
Indices: 24475714--24475784 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
24475704 TTTATGTAGC
* *
24475714 GACAGTCTTGGGTGCATTTTGGAAATATTCATGCGAT
1 GACAGTCTTGGGTGCAATTTGGAAATACTCATGCGAT
* *
24475751 GACAGTTTTGGGTGCAATTT-GAAAGTGCTCATGC
1 GACAGTCTTGGGTGCAATTTGGAAA-TACTCATGC
24475785 AGCAACAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 4 0.14
37 25 0.86
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (37 bp):
GACAGTCTTGGGTGCAATTTGGAAATACTCATGCGAT
Found at i:24480627 original size:26 final size:26
Alignment explanation
Indices: 24480591--24480642 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24480581 ATGCGTAGGA
* *
24480591 TAGTTGCATTCGTGCGGTTTCAACTG
1 TAGTTACATTCGTGCGATTTCAACTG
24480617 TAGTTACATTCGTGCGATTTCAACTG
1 TAGTTACATTCGTGCGATTTCAACTG
24480643 CCTCGAGGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (26 bp):
TAGTTACATTCGTGCGATTTCAACTG
Found at i:24482907 original size:41 final size:41
Alignment explanation
Indices: 24482755--24482927 Score: 226
Period size: 41 Copynumber: 4.2 Consensus size: 41
24482745 ACTGTAAGTA
* *
24482755 TAAAGGAAGACTCATGTCTCGGGAAGAGCATGAGATTATAT
1 TAAAGGAAGACTCATGACTCGGGATGAGCATGAGATTATAT
*
24482796 TAAAGGAAGACTCAT-ATCTCGGGATGAGCATGAGATTGTAT
1 TAAAGGAAGACTCATGA-CTCGGGATGAGCATGAGATTATAT
*
24482837 TAAAGGAAGACTCGTGACTCGGGATGAGCATGAGATTATATT
1 TAAAGGAAGACTCATGACTCGGGATGAGCATGAGATTATA-T
* * * *
24482879 TAAAGGAAGACTTATGACTCGGTA-GAGCATAAGATTGT-T
1 TAAAGGAAGACTCATGACTCGGGATGAGCATGAGATTATAT
24482918 TAAGAGGAAG
1 TAA-AGGAAG
24482928 GTCTATGACT
Statistics
Matches: 118, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
39 4 0.03
40 6 0.05
41 85 0.72
42 23 0.19
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.25
Consensus pattern (41 bp):
TAAAGGAAGACTCATGACTCGGGATGAGCATGAGATTATAT
Found at i:24487450 original size:23 final size:24
Alignment explanation
Indices: 24487407--24487452 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
24487397 TTTCCTAAGT
24487407 GGAGAGAAAAGGAAGGTGAGAGGA
1 GGAGAGAAAAGGAAGGTGAGAGGA
24487431 GGAGA-AATAAGG-AGGTGAGAGG
1 GGAGAGAA-AAGGAAGGTGAGAGG
24487453 GAATGAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.43, C:0.00, G:0.50, T:0.07
Consensus pattern (24 bp):
GGAGAGAAAAGGAAGGTGAGAGGA
Found at i:24487463 original size:23 final size:24
Alignment explanation
Indices: 24487409--24487463 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
24487399 TCCTAAGTGG
* *
24487409 AGAGAAAAGGAAGGTGAGAGGAGG
1 AGAGATAAGGAAGGTGAGAGGAGA
*
24487433 AGAAATAAGG-AGGTGAGAGG-GA
1 AGAGATAAGGAAGGTGAGAGGAGA
24487455 ATGAGATAA
1 A-GAGATAA
24487464 AGGGGAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 2 0.08
23 16 0.62
24 8 0.31
ACGTcount: A:0.47, C:0.00, G:0.44, T:0.09
Consensus pattern (24 bp):
AGAGATAAGGAAGGTGAGAGGAGA
Found at i:24497244 original size:22 final size:22
Alignment explanation
Indices: 24497194--24497272 Score: 113
Period size: 23 Copynumber: 3.5 Consensus size: 22
24497184 CTGGGGAAAT
*
24497194 AGTAAGCACACACAGTGCAATCC
1 AGTAGGCACACACAGTGCAAT-C
24497217 AGTAGGCACACACAGTGCAATC
1 AGTAGGCACACACAGTGCAATC
* *
24497239 AGTAGGCACACATAGCGCAAATC
1 AGTAGGCACACACAGTGC-AATC
24497262 AGTAGGCACAC
1 AGTAGGCACAC
24497273 GAAATACGAA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
22 17 0.33
23 35 0.67
ACGTcount: A:0.38, C:0.28, G:0.22, T:0.13
Consensus pattern (22 bp):
AGTAGGCACACACAGTGCAATC
Found at i:24502125 original size:17 final size:17
Alignment explanation
Indices: 24502105--24502143 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
24502095 ACTACAATGC
*
24502105 AAATGCGTCGACAAATA
1 AAATGCATCGACAAATA
* *
24502122 AAATGCATGGACAATTA
1 AAATGCATCGACAAATA
24502139 AAATG
1 AAATG
24502144 TAATGACAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.21
Consensus pattern (17 bp):
AAATGCATCGACAAATA
Found at i:24519589 original size:14 final size:13
Alignment explanation
Indices: 24519572--24519616 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
24519562 TAGATACAAT
24519572 TTTATTTTATTTTA
1 TTTATTTT-TTTTA
*
24519586 TTTATTTTTTTCA
1 TTTATTTTTTTTA
*
24519599 TTTCATTTTCTTTA
1 TTT-ATTTTTTTTA
24519613 TTTA
1 TTTA
24519617 ATTAATTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 8 0.30
14 19 0.70
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTTTTTA
Found at i:24519606 original size:23 final size:22
Alignment explanation
Indices: 24519571--24519615 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
24519561 ATAGATACAA
*
24519571 TTTTATTTTATTTTATTTATTT
1 TTTTATTTCATTTTATTTATTT
*
24519593 TTTTCATTTCATTTTCTTTATTT
1 TTTT-ATTTCATTTTATTTATTT
24519616 AATTAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTTATTTCATTTTATTTATTT
Found at i:24519624 original size:23 final size:23
Alignment explanation
Indices: 24519575--24519624 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
24519565 ATACAATTTT
* ** *
24519575 ATTTTATTTTATTTATTTTTTTC
1 ATTTCATTTTATTTATTTAATTA
*
24519598 ATTTCATTTTCTTTATTTAATTA
1 ATTTCATTTTATTTATTTAATTA
24519621 ATTT
1 ATTT
24519625 TGGTTTATGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (23 bp):
ATTTCATTTTATTTATTTAATTA
Found at i:24528228 original size:17 final size:16
Alignment explanation
Indices: 24528208--24528265 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 16
24528198 TAATTGTCCC
24528208 TGCATTATTAATGTCAT
1 TGCATT-TTAATGTCAT
* *
24528225 TGCATTTTTATTGTCAA
1 TGCA-TTTTAATGTCAT
24528242 TGCA-TTTACATTGTCAT
1 TGCATTTTA-A-TGTCAT
24528259 TGCATTT
1 TGCATTT
24528266 CCATATATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
15 4 0.12
17 25 0.76
18 4 0.12
ACGTcount: A:0.24, C:0.14, G:0.12, T:0.50
Consensus pattern (16 bp):
TGCATTTTAATGTCAT
Found at i:24540303 original size:67 final size:67
Alignment explanation
Indices: 24540224--24540360 Score: 265
Period size: 67 Copynumber: 2.0 Consensus size: 67
24540214 TGAATCTCCT
24540224 AATTTTTGATGTGTTTCTTGATGGATCAAGGTAGGAGAACGTCCCTCTTGAAGCAATTTTAACTT
1 AATTTTTGATGTGTTTCTTGATGGATCAAGGTAGGAGAACGTCCCTCTTGAAGCAATTTTAACTT
24540289 AG
66 AG
*
24540291 AATTTTTTATGTGTTTCTTGATGGATCAAGGTAGGAGAACGTCCCTCTTGAAGCAATTTTAACTT
1 AATTTTTGATGTGTTTCTTGATGGATCAAGGTAGGAGAACGTCCCTCTTGAAGCAATTTTAACTT
24540356 AG
66 AG
24540358 AAT
1 AAT
24540361 GAAAATCAAC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (67 bp):
AATTTTTGATGTGTTTCTTGATGGATCAAGGTAGGAGAACGTCCCTCTTGAAGCAATTTTAACTT
AG
Found at i:24542796 original size:31 final size:31
Alignment explanation
Indices: 24542761--24542822 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
24542751 TTTCGATGTT
24542761 AACTAACGGTTTGTCACTCTGGTCATCACTC
1 AACTAACGGTTTGTCACTCTGGTCATCACTC
24542792 AACTAACGGTTTGTCACTCTGGTCATCACTC
1 AACTAACGGTTTGTCACTCTGGTCATCACTC
24542823 TCTTTTCCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (31 bp):
AACTAACGGTTTGTCACTCTGGTCATCACTC
Found at i:24545394 original size:18 final size:18
Alignment explanation
Indices: 24545368--24545419 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
24545358 TTTGTATAGG
* *
24545368 TTTCTTTTTGTTTTTCAT
1 TTTCATTTTCTTTTTCAT
* **
24545386 TTTCATTTTCTTCTTGTT
1 TTTCATTTTCTTTTTCAT
24545404 TTTCATTTTCTTTTTC
1 TTTCATTTTCTTTTTC
24545420 CTCTAGAGAA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.06, C:0.15, G:0.04, T:0.75
Consensus pattern (18 bp):
TTTCATTTTCTTTTTCAT
Found at i:24545395 original size:24 final size:24
Alignment explanation
Indices: 24545368--24545419 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
24545358 TTTGTATAGG
*
24545368 TTTCTTTTTGTTTTTCATTTTCAT
1 TTTCTTCTTGTTTTTCATTTTCAT
*
24545392 TTTCTTCTTGTTTTTCATTTTCTT
1 TTTCTTCTTGTTTTTCATTTTCAT
24545416 TTTC
1 TTTC
24545420 CTCTAGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.06, C:0.15, G:0.04, T:0.75
Consensus pattern (24 bp):
TTTCTTCTTGTTTTTCATTTTCAT
Found at i:24549558 original size:17 final size:17
Alignment explanation
Indices: 24549529--24549561 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
24549519 CATTGAACTC
24549529 AACTTCAGCTCATTTTT
1 AACTTCAGCTCATTTTT
24549546 AACTT-AGCATCATTTT
1 AACTTCAGC-TCATTTT
24549562 GCTGGAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.27, C:0.21, G:0.06, T:0.45
Consensus pattern (17 bp):
AACTTCAGCTCATTTTT
Found at i:24549774 original size:39 final size:39
Alignment explanation
Indices: 24549656--24549754 Score: 171
Period size: 39 Copynumber: 2.5 Consensus size: 39
24549646 TTAAATAGGG
24549656 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
*
24549695 TTTTAATGTGTCTTATTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
* *
24549734 TTTTAAGGTGTCTAAGTTTGA
1 TTTTAATGTGTCTTAGTTTGA
24549755 GACAAATTAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.25, C:0.05, G:0.16, T:0.54
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
Found at i:24556725 original size:17 final size:17
Alignment explanation
Indices: 24556688--24556725 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
24556678 TTTTTTATTT
*
24556688 TTTTCTTTTTCTCGTAT
1 TTTTCTTTTTCTCGTAC
24556705 TTTTCTTTTTTCTC-TAC
1 TTTTC-TTTTTCTCGTAC
24556722 TTTT
1 TTTT
24556726 TTAATCACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTTCTTTTTCTCGTAC
Found at i:24557763 original size:5 final size:5
Alignment explanation
Indices: 24557753--24557778 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
24557743 CATGACAACT
24557753 AATAA AATAA AATAA AATAA AATAA A
1 AATAA AATAA AATAA AATAA AATAA A
24557779 TTAAGTGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:24558728 original size:48 final size:48
Alignment explanation
Indices: 24558672--24558802 Score: 181
Period size: 48 Copynumber: 2.7 Consensus size: 48
24558662 CATGGCATTT
* * *
24558672 AACAAAGATGAATTTAACAAACAAAACAGTTAATAATGCAGATTACTA
1 AACAAAGATGCATTTAACAAAAAAAACACTTAATAATGCAGATTACTA
* * * *
24558720 AACAAAGATGCATTTAACAAATAAAACACTTAATGATGCATATTATTA
1 AACAAAGATGCATTTAACAAAAAAAACACTTAATAATGCAGATTACTA
*
24558768 AACAAATATGCATTTAACAAAAAAAAACACTTAAT
1 AACAAAGATGCATTTAAC-AAAAAAAACACTTAAT
24558803 GAAGCATAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
48 59 0.80
49 15 0.20
ACGTcount: A:0.54, C:0.13, G:0.08, T:0.25
Consensus pattern (48 bp):
AACAAAGATGCATTTAACAAAAAAAACACTTAATAATGCAGATTACTA
Found at i:24559515 original size:189 final size:192
Alignment explanation
Indices: 24559177--24559563 Score: 465
Period size: 189 Copynumber: 2.0 Consensus size: 192
24559167 CAAAGACCAA
* * *
24559177 AAGTTGTATACAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCAAGCAAGGATTGTTC
1 AAGTTGTATACAAAATGACAAACTATATACACCAAATGATGCGATTTACCAAGCAAGGAATGTTC
* * *
24559242 AAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTC
66 AAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTAAAGGAACCGAAGTTAAAAAAGAACTC
* * * * * *
24559307 GTAAATGTTTGACAAGTTCGAAAGTTCATCCATGAACCA-AGAG-A-AATTCTCACGTAAAT
131 ATAAAAGTGTGACAAGTTCGAAAGTTCATCCAAGAACAAGAGAGAACAATTCACACGTAAAT
* * * * ** * *
24559366 AAGTTGTCTACAAAATGTCAAACTATTTACACCAAATTATGCGATTTACCGTGCATGGAATGTTT
1 AAGTTGTATACAAAATGACAAACTATATACACCAAATGATGCGATTTACCAAGCAAGGAATGTTC
** * ** * *
24559431 GGAAAATTGCTCAAAGGACTGGATCATCTTGAATACTTAAAGGAATTGAAGTTATAAATGAACTC
66 AAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTAAAGGAACCGAAGTTAAAAAAGAACTC
* * * *
24559496 ATAAAAGTGTGAGAAGTTCGGAAGTTCGTGCAAGAACAAGAGAGAAACAATTCACACGTAAAT
131 ATAAAAGTGTGACAAGTTCGAAAGTTCATCCAAGAACAAGAGAG-AACAATTCACACGTAAAT
24559559 AAGTT
1 AAGTT
24559564 TTTAATCATA
Statistics
Matches: 163, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
189 139 0.85
190 4 0.02
192 1 0.01
193 19 0.12
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (192 bp):
AAGTTGTATACAAAATGACAAACTATATACACCAAATGATGCGATTTACCAAGCAAGGAATGTTC
AAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTAAAGGAACCGAAGTTAAAAAAGAACTC
ATAAAAGTGTGACAAGTTCGAAAGTTCATCCAAGAACAAGAGAGAACAATTCACACGTAAAT
Found at i:24561634 original size:216 final size:216
Alignment explanation
Indices: 24559366--24563905 Score: 5102
Period size: 216 Copynumber: 21.1 Consensus size: 216
24559356 TCACGTAAAT
* * * * * * *
24559366 AAGTTGTCTACAAAATGTCAAACTATTTACACCAAATTATGCGATTTACCGTGCATGGAATGTTT
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * ** *
24559431 GGAAAATTGCTCAAAGGACTGGATCATCTTGAATACTTAAAGGAATTGAAGTTATAAATGAACTC
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * ** *
24559496 ATAAAAGTGTGAGAAGTTCGGAAGTTCGTG-CAAGAA-CAAGAGAGAAACAATTCACACGTAAAT
131 GTAAAAGTTTGACAAGTTAAGAAGTTCG-GCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
*
24559559 AAGTTTTTAA-TCATAAGACAAA
195 AAGTTTTTAATTCA-AAGACCAA
* * * * * * *
24559581 AATTTGTTTA-TAAATGACAAATTATTAAGACCAAATGATGCGAATTCCAGAGCTTGGAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * **
24559645 -AAATAGTTGCTCGAAGGAATGGATCGTCTTGAGTACTTTAATAAACCGAAGTTATAAAAGAA-T
66 GAAA-AATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
** * * * * * * * * *
24559708 AAATAAAACTTTAAAAAGTTCAGAAGTTC-GTCAA-AAACAAGAGCGAAACATTTCTTACGTAAA
130 -CGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * * *
24559771 CAAGTTTTAAATTTAAAAACCAA
194 TAAGTTTTTAATTCAAAGACCAA
* * * * * * *
24559794 AATTTGTTTACAACATGACTAACAATTTAGACCAAATGATGTGATTTTCCAAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * *
24559859 GAAAAATTGCTCGAAGGAATGGATCGTCTTGATTACTTCAAGGAACCAAAGTTATAAAAGAACTC
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * *
24559924 GTAAAAGTTTTACTAGTT-CGAAAGTTCGGCCATGAACCAAGAGAGAAACGATTCTCAC-TTAAT
131 GTAAAAGTTTGACAAGTTAAG-AAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
*
24559987 AAGTTTTTCATTCAAAGACCAA
195 AAGTTTTTAATTCAAAGACCAA
* * * * * * *
24560009 AAGTTGTTTACAAAATGATAAACTATTTAGACCAAAAGATGTGATTTCACGAACATGCAAAGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * ** *
24560074 GAAAACTTGCTCAAATGAATGGATCGTCTTGAATAC-TTAGAAGAACTAAAGTTGTAAAAGAACT
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA-AGGAACCGAAGTTATAAAAGAACT
* * * * *
24560138 CGTAAAAGTTTAACAAG-TAAGAAGTTTGGTCAATCCATTGACCAAGAGAGAAACAATTCTCGCG
130 CGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAA--GA---ACCAAGAGAGAAACAATTCTCACG
*
24560202 TAAAAAAGTTTTTAATTCAAAGACCAA
190 TAAATAAGTTTTTAATTCAAAGACCAA
* * *
24560229 AAGATGTTTACAAAATGACATACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * *
24560294 GAAAAATTGCTTGAAGAAATGGATCGTCTTGAATGCTTTAAGGAACAGAAGTTATAAAAGAACTC
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * * *
24560359 GCAAAAGTTTGAAAACTTAAGAAGTTAGGCCAAGGAGCAAGAGAGAAACAATTCTCACGTAAAAA
131 GTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
**
24560424 AAATTTTAATTCAAAGACC-A
196 AGTTTTTAATTCAAAGACCAA
* * ** *
24560444 AAGTTGTTTACAACATCACAAACTATTTAGACCAAATGATGC---TTCCAAAGCATGAAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
** * * *
24560506 GGCAAATAGGTCGAAGGAATGAATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAACA-AACT
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA-AGAACT
* * * * * *
24560570 CATAAAAGTTTGACAAGAT-CGAAAGTTCGACCAAGAACCAAGAGAAAAACAATTCTTACGTAAA
130 CGTAAAAGTTTGACAAGTTAAG-AAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
24560634 TAAGTTTTTAATTCAAAGACCAA
194 TAAGTTTTTAATTCAAAGACCAA
* * * ** *
24560657 AAGTTATTTACAATATGACAAACTATTTAGACCAAATGATGCAATTTCCAAAGCATGAAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * *
24560722 -AAAAATTGCTTGAAGGAATGGATTGTCTTGAATACTTTAAGGAACCGGAGTTGTAAACA-AACT
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA-AGAACT
* ** * *
24560785 TGTAAAAGTTTGACAAGTTCGGAAGTTCTGCCAAGAACCAAGAGAG-AACAATTCTCACTTAAAT
130 CGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
24560849 AAGTTTTTAATTCAAAGACCAA
195 AAGTTTTTAATTCAAAGACCAA
* * *
24560871 AAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTCCCGAGCTTGGAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * **
24560936 GGAAAATTGTTTGAAGGAATGGATCGTCTTGAATACCTTAAGCAACTAAAGTTATAAAAGAACTC
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * *
24561001 GTAAAAGTTTGACAAGTT-CGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATACTCACATAAAT
131 GTAAAAGTTTGACAAGTTAAG-AAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
24561065 AAG-TTTTAATTCAAAGACCAA
195 AAGTTTTTAATTCAAAGACCAA
* * * *
24561086 AAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATGATGTGATTTCCCGATCATGTAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * *
24561151 GAAAAAATTGCTCGAATGAATGGATC-TATTGAATACTTTAAGGAACCGAAGTAATAAAAGAACT
66 G-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * * *
24561215 CGTAAAAGTTAGACAAGTT-CGAACTTTTGGCCAA-AAACAAGAAAGAAACAATTCTCACGTAAA
130 CGTAAAAGTTTGACAAGTTAAGAA-GTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * *
24561278 TAAGTTTTTAATTCAATGTCCGA
194 TAAGTTTTTAATTCAAAGACCAA
* * * *
24561301 AAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGTGATTACCCGTGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * *
24561366 GAAAAATTACTCGAAGGAATGGATCG-CATTGAAAACTTTAAGGAATCAAAGTTATAAAAGAACT
66 GAAAAATTGCTCGAAGGAATGGATCGTC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * * *
24561430 TGTAAAAGTTTGACAAGTTATGAAGTTAGACCAAGGACAAAGAGAGAAACAATTCTCACGTAAAT
130 CGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
24561495 AAGTTTTTAATTCAAAGACCAA
195 AAGTTTTTAATTCAAAGACCAA
* * * * * *
24561517 AAGTT-TTATACAAAATGACAAATTATATAAACCAAATGATGCGATTTCCCGAGTAAGGATTGTT
1 AAGTTGTT-TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * *
24561581 CGAAAAATTGCTCGAAGGAATGGATCATCTTAAATACTTTAAGGAACCAAAGTTAAAAAAGAACT
65 CGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * ** * *
24561646 CTTAAATGTTTGACAAGTT-TGAAAGTTCATCCATGAACC-A-AGAG--A-AGTTCTCACGTAAA
130 CGTAAAAGTTTGACAAGTTAAG-AAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * *
24561705 TAAGTTATTAATTTAAAGACAAA
194 TAAGTTTTTAATTCAAAGACCAA
* * * *
24561728 AAGTTGTTTACAAAATGTCAAACTATTTAAACCAAATTATGCGATTTCCCGTGCATGGAATG-TC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * **
24561792 TGGAAAATTGCTCGAAGGACTGTATCATCTTGAATA-TTGTAAGGAATTGAAGTTAT-AAAGAAC
66 -GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT-TAAGGAACCGAAGTTATAAAAGAAC
* ** ** * *
24561855 TCGTAAAAGTGTGACAAGTTTGGAAGTTCATCCAAGAA-CAAGAGAGAAACAATTCACACATAAA
129 TCGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
*
24561919 TAAGTTTTTAATT-ATAAG-GCAGA
194 TAAGTTTTTAATTCA-AAGACCA-A
* * *
24561942 AA-TTAGTTTACAAAATGACAAATTATTAAGACCAAATGATGCGATTTCCAGAGCATGGAATGTT
1 AAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * ** * *
24562006 CGAATAATTGCTTGAAGGAATGGATCGCCTTGAATACTTTAATAAATCGAAGTTATAAAAGAACG
65 CGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
** * * * * * *
24562071 AATAAAACTTTGACAAGTTGAGAAGTTCGTCAAAGAA-CAAGAGAGAAACATTTCTTACGTAAAT
130 CGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
**
24562135 AAGTTTTTAATT-TTAGAACCAA
195 AAGTTTTTAATTCAAAG-ACCAA
* * ** * * *
24562157 AATTTATTTACAAAATGAGTAACAATTTAGACCAAATGATGTGATTTTCCGAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * *
24562222 AAAAAATTGCTCGAAGGACTGGATCGTCTTGATTACTTCAAGGAACCAAAGTTATAAAAGAACTC
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * *
24562287 GTAAAAGTTTGACAAGTT-CGAAAGTTCGACCATGAACTAAGAGAGAAACAATTCTCAC-TTAAT
131 GTAAAAGTTTGACAAGTTAAG-AAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
24562350 AAGTTTTTTAATTCAAAGACCAA
195 AAG-TTTTTAATTCAAAGACCAA
* * * * *
24562373 AAGTTGTTTACAAAATGACAAATTGTTTAGACCAAATGATGCGATTTCCTGAACATGGAAAGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * *
24562438 AAAAAATTGCTCAAATGAATGGATTGTCTTAAATAC-TTAGAAGAACCGAAGTTATAAAAGAACT
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA-AGGAACCGAAGTTATAAAAGAACT
* * * *
24562502 CATAAAAGTTTAACAAGTTAAGAAGTTTGGCCATCG-ACCAAGAGAGAAACAATTCTCACGTAAA
130 CGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAA
* *
24562566 AAAGTTTTAAATTCAAAGACCAA
194 TAAGTTTTTAATTCAAAGACCAA
* * *
24562589 AAGATGTTTACAAAATGACATACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * *
24562654 AAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACAC
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * * *
24562719 GTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGGAGCGAGAGAGAAACAATTCTTACTTAAAAA
131 GTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
*
24562784 ATTTTTTAATTCAAAGACCAA
196 AGTTTTTAATTCAAAGACCAA
* * * ** * *
24562805 AACTTGTTTACAAAATCACAAACTATTTAGACCAAATGATGCAATTTCCAAAGCATGAAATGATC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
** * *
24562870 GGCAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACAGAAGTTATAAACA-AACT
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA-AGAACT
* * * * *
24562934 CGTAAAAGATTGACAAGATCAGAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACTTAAAT
130 CGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
24562999 AAGTTTTTAATTCAAAGACCAA
195 AAGTTTTTAATTCAAAGACCAA
* *
24563021 AAGTTGTTTACAAAATGGA-AAACTATTTAGACCAAATGATGCGATTTCCTGAGCTTGGAATGTT
1 AAGTTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * *
24563085 CGAAAAATTGTTCGAAGGAAGGGATCGTCTTGAATACTTTAAGGAACTGAAGTTAT-AAAGAACT
65 CGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
** * *
24563149 CGTAAAAGTTTGACAAGTTTGGAAGTTCGGCCAAGAACCAAGAGAGAAAACAATACTCACATAAA
130 CGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAA
24563214 TAAGTTTTTAATTCAAAGA-C--
194 TAAGTTTTTAATTCAAAGACCAA
* * * * *
24563234 AAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATTATGCGATTTCCCAATCATGTAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * *
24563299 GAAAAAATTGCTCGAATGAATGGATC-TATTGAATACTTTAAGGAACCGAAGTAATAAAAGAACT
66 G-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* ** * * *
24563363 CGTAAAAGTTTGACAAGTTCAGACTTTTGGCCAAAAACCAAGAAAGAAACAATTCTCACGTAAAT
130 CGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * *
24563428 AAGTTTTTAATACAAAGTCCGA
195 AAGTTTTTAATTCAAAGACCAA
* * * *
24563450 AAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGTGATTACCCGTGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * *
24563515 TG-AAAATTACTCGAAGGAATAGATTG-CATTGAAAACTTTAAGGAACCGAAGTTACAAAAGAAC
66 -GAAAAATTGCTCGAAGGAATGGATCGTC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
* * ** * *
24563578 TTGTAAAAGTTTGACAAGTTAAGAAGTTAGATCAAGGACCAAGAGAGAAACAATTCTCACATAAA
129 TCGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
*
24563643 TAAGTTTTCAATTCAAAGACCAA
194 TAAGTTTTTAATTCAAAGACCAA
* * *
24563666 AAGTTGTATACAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCA-AGAATTGTT
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA-TGTT
*
24563730 C-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT
65 CGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * ** ** *
24563794 CGTCAATGTTTGACTAGTTCGGAAGTTCATCCATGAACC-A-AGAG--A-AATTCTCACGTAAAT
130 CGTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * *
24563854 AAGTTATTAATTTAAAAGACAAA
195 AAGTTTTTAA-TTCAAAGACCAA
*
24563877 AAGTTGTTTACAAAATGTCAAACTATTTA
1 AAGTTGTTTACAAAATGACAAACTATTTA
24563906 TGATACGAAA
Statistics
Matches: 3654, Mismatches: 584, Indels: 178
0.83 0.13 0.04
Matches are distributed among these distances:
209 1 0.00
210 65 0.02
211 171 0.05
212 146 0.04
213 219 0.06
214 588 0.16
215 1024 0.28
216 1241 0.34
217 17 0.00
219 21 0.01
220 144 0.04
221 17 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (216 bp):
AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
GTAAAAGTTTGACAAGTTAAGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTTAATTCAAAGACCAA
Found at i:24563586 original size:645 final size:644
Alignment explanation
Indices: 24559366--24563905 Score: 5065
Period size: 645 Copynumber: 7.0 Consensus size: 644
24559356 TCACGTAAAT
* * * * * ** *
24559366 AAGTTGTCTACAAAATGTCAAACTATTTACACCAAATTATGCGATTTACCGTGCATGGAATGTTT
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * * * * ** *
24559431 GGAAAATTGCTCAAAGGACTGGATCATCTTGAATACTTAAAGGAATTGAAGTTATAAATGAACTC
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * *
24559496 ATAAAAGTGTGAGAAGTTCGGAAGTTCGTG-CAAGAA-CAAGAGAGAAACAATTCACACGTAAAT
131 GTAAAAGTTTGACAAGTTCAGAAGTTTG-GCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * *
24559559 AAGTTTTTAA-TCATAAGACAAAAATTTGTTTA-TAAATGACAAATTATTAAGACCAAATGATGC
195 AAGTTTTTAATTCA-AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * *
24559622 GAATTCCAGAGCTTGGAATGTTC-AAATAGTTGCTCGAAGGAATGGATCGTCTTGAGTACTTTAA
259 GATTTCCCGAGCATGGAATGTTCGAAA-A-TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
** ** * * * * *
24559686 TAAACCGAAGTTATAAAAGAA-TAAATAAAACTTTAAAAAGTTCAGAAGTTCG-TCAA-AAACAA
322 GGAACCGAAGTTATAAAAGAACT-CGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAA
* * * * * * * * *
24559748 GAGCGAAACATTTCTTACGTAAACAAGTTTTAAATTTAAAAACCAAAATTTGTTTACAACATGAC
386 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
* * * * *
24559813 TAACAATTTAGACCAAATGATGTGATTTTCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
451 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * *
24559878 TGGATCGTCTTGATTACTTCAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACTAGTTC
516 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTC
* * * * *
24559943 GAAAGTTCGGCCATGAACCAAGAGAGAAACGATTCTCAC-TTAATAAGTTTTTCATTCAAAGACC
580 GGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-C
24560007 AA
644 -A
* * * * * *
24560009 AAGTTGTTTACAAAATGATAAACTATTTAGACCAAAAGATGTGATTTCACGAA-CATGCAAAGTT
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CCAAGCATGGAATGTT
* * * * ** *
24560073 CGAAAACTTGCTCAAATGAATGGATCGTCTTGAATAC-TTAGAAGAACTAAAGTTGTAAAAGAAC
65 CGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA-AGGAACCGAAGTTATAAAAGAAC
* * * * *
24560137 TCGTAAAAGTTTAACAAG-TAAGAAGTTTGGTCAATCCATTGACCAAGAGAGAAACAATTCTCGC
129 TCGTAAAAGTTTGACAAGTTCAGAAGTTTGGCCAA--GA---ACCAAGAGAGAAACAATTCTCAC
* * *
24560201 GTAAAAAAGTTTTTAATTCAAAGACCAAAAGATGTTTACAAAATGACATACTATTTAGACCAAAT
189 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * *
24560266 GATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAGAAATGGATCGTCTTGAATGCT
254 GATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * * * * * * *
24560331 TTAAGGAACAGAAGTTATAAAAGAACTCGCAAAAGTTTGAAAACTTAAGAAGTTAGGCCAAGGAG
318 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAAC
* ** *
24560396 CAAGAGAGAAACAATTCTCACGTAAAAAAAATTTTAATTCAAAGACC-AAAGTTGTTTACAACAT
383 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
* ** * ** * *
24560460 CACAAACTATTTAGACCAAATGATGC---TTCCAAAGCATGAAATGTTCGGCAAATAGGTCGAAG
448 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * *
24560522 GAATGAATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAACAAACTCATAAAAGTTTGACAAG
513 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA-GAACTCGTAAAAGTTTGACAAG
* * * * *
24560587 ATCGAAAGTTCGACCAAGAACCAAGAGAAAAACAATTCTTACGTAAATAAGTTTTTAATTCAAAG
577 TTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
24560652 ACCAA
642 A-C-A
* * * * *
24560657 AAGTTATTTACAATATGACAAACTATTTAGACCAAATGATGCAATTTCCAAAGCATGAAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * * *
24560722 -AAAAATTGCTTGAAGGAATGGATTGTCTTGAATACTTTAAGGAACCGGAGTTGTAAACA-AACT
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA-AGAACT
* * *
24560785 TGTAAAAGTTTGACAAGTTCGGAAGTTCT-GCCAAGAACCAAGAGAG-AACAATTCTCACTTAAA
130 CGTAAAAGTTTGACAAGTTCAGAAGTT-TGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
*
24560848 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGC
194 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * *
24560913 AATTTCCCGAGCTTGGAATGTTCGGAAAATTGTTTGAAGGAATGGATCGTCTTGAATACCTTAAG
259 GATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* ** *
24560978 CAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGTTCGGCCAAGAACCAAG
323 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGACCAAGAACCAAG
* *
24561042 AGAGAAACAATACTCACATAAATAAG-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
387 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * * * *
24561106 AACTATTTAGGCCAAATGATGTGATTTCCCGATCATGTAATGTTCGAAAAAATTGCTCGAATGAA
452 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAAATTGCTCGAAGGAA
* * *
24561171 TGGATC-TATTGAATACTTTAAGGAACCGAAGTAATAAAAGAACTCGTAAAAGTTAGACAAGTTC
516 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTC
* * * * * *
24561235 -GAACTTTTGGCCAA-AAACAAGAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGTC
580 GGAA-GTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-A
24561298 CGA
643 C-A
* * * **
24561301 AAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGTGATTACCCGTGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * * *
24561366 GAAAAATTACTCGAAGGAATGGATCG-CATTGAAAACTTTAAGGAATCAAAGTTATAAAAGAACT
66 GAAAAATTGCTCGAAGGAATGGATCGTC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * *
24561430 TGTAAAAGTTTGACAAGTT-ATGAAGTTAGACCAAGGACAAAGAGAGAAACAATTCTCACGTAAA
130 CGTAAAAGTTTGACAAGTTCA-GAAGTTTGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * *
24561494 TAAGTTTTTAATTCAAAGACCAAAAGTT-TTATACAAAATGACAAATTATATAAACCAAATGATG
194 TAAGTTTTTAATTCAAAGACCAAAAGTTGTT-TACAAAATGACAAACTATTTAGACCAAATGATG
* * * * *
24561558 CGATTTCCCGAGTAAGGATTGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTAAATACTTTAA
258 CGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * * * *
24561623 GGAACCAAAGTTAAAAAAGAACTCTTAAATGTTTGACAAGTT-TGAAAGTTC-ATCCATGAACC-
322 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGA-CCAAGAACCA
* * * * *
24561685 A-AGAG--A-AGTTCTCACGTAAATAAGTTATTAATTTAAAGACAAAAAGTTGTTTACAAAATGT
385 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * *
24561746 CAAACTATTTAAACCAAATTATGCGATTTCCCGTGCATGGAATG-TCTGGAAAATTGCTCGAAGG
450 CAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTGCTCGAAGG
* * * ** *
24561810 ACTGTATCATCTTGAATA-TTGTAAGGAATTGAAGTTATAAAGAACTCGTAAAAGTGTGACAAGT
514 AATGGATCGTCTTGAATACTT-TAAGGAACCGAAGTTATAAAGAACTCGTAAAAGTTTGACAAGT
* ** * *
24561874 TTGGAAGTTCATCCAAGAA-CAAGAGAGAAACAATTCACACATAAATAAGTTTTTAATT-ATAAG
578 TCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA-AAG
*
24561937 GCA
642 ACA
* * *
24561940 GAAATTAGTTTACAAAATGACAAATTATTAAGACCAAATGATGCGATTT-CCAGAGCATGGAATG
1 -AAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCA-AGCATGGAATG
* * * ** *
24562004 TTCGAATAATTGCTTGAAGGAATGGATCGCCTTGAATACTTTAATAAATCGAAGTTATAAAAGAA
63 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
*** * * * * * * *
24562069 CGAATAAAACTTTGACAAGTTGAGAAGTTCGTCAAAGAA-CAAGAGAGAAACATTTCTTACGTAA
128 CTCGTAAAAGTTTGACAAGTTCAGAAGTTTGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
** * * ** *
24562133 ATAAGTTTTTAATT-TTAGAACCAAAATTTATTTACAAAATGAGTAACAATTTAGACCAAATGAT
193 ATAAGTTTTTAATTCAAAG-ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * * * *
24562197 GTGATTTTCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGACTGGATCGTCTTGATTACTTCA
257 GCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
* * *
24562262 AGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGTTCGACCATGAACTA
321 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGACCAAGAACCA
*
24562326 AGAGAGAAACAATTCTCAC-TTAATAAGTTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
385 AGAGAGAAACAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * * * * * *
24562390 ACAAATTGTTTAGACCAAATGATGCGATTTCCTGAACATGGAAAGTTCAAAAAATTGCTCAAATG
449 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGG
* * * * *
24562455 AATGGATTGTCTTAAATAC-TTAGAAGAACCGAAGTTATAAAAGAACTCATAAAAGTTTAACAAG
514 AATGGATCGTCTTGAATACTTTA-AGGAACCGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAG
** * * * *
24562519 TTAAGAAGTTTGGCCATCG-ACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTAAATTCAAA
577 TTCGGAAGTTCGGCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
24562583 GACCAA
641 GA-C-A
* * * *
24562589 AAGATGTTTACAAAATGACATACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * *
24562654 AAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACAC
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * * * *
24562719 GTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGGAGCGAGAGAGAAACAATTCTTACTTAAAAA
131 GTAAAAGTTTGACAAGTTCAGAAGTTTGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
24562784 ATTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATCACAAACTATTTAGACCAAATGATGCAA
196 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
** * * * *
24562849 TTTCCAAAGCATGAAATGATCGGCAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGA
261 TTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * *
24562914 ACAGAAGTTATAAACA-AACTCGTAAAAGATTGACAAGATCAGAAGTTCGACCAAGAACCAAGAG
325 ACCGAAGTTATAAA-AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGAG
*
24562978 AGAAACAATTCTCACTTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGGA-AA
389 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-GACAA
* * * *
24563042 ACTATTTAGACCAAATGATGCGATTTCCTGAGCTTGGAATGTTCGAAAAATTGTTCGAAGGAAGG
453 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* *
24563107 GATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAGAACTCGTAAAAGTTTGACAAGTTTGGA
518 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* *
24563172 AGTTCGGCCAAGAACCAAGAGAGAAAACAATACTCACATAAATAAGTTTTTAATTCAAAGAC-
583 AGTTCGGCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACA
* * * *
24563234 AAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATTATGCGATTTCCCAATCATGTAATGTTC
1 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * *
24563299 GAAAAAATTGCTCGAATGAATGGATC-TATTGAATACTTTAAGGAACCGAAGTAATAAAAGAACT
66 G-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
** * *
24563363 CGTAAAAGTTTGACAAGTTCAGACTTTTGGCCAAAAACCAAGAAAGAAACAATTCTCACGTAAAT
130 CGTAAAAGTTTGACAAGTTCAGAAGTTTGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * *
24563428 AAGTTTTTAATACAAAGTCCGAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGTG
195 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * * * * *
24563493 ATTACCCGTGCATGGAATGTTCTGAAAATTACTCGAAGGAATAGATTG-CATTGAAAACTTTAAG
260 ATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTC-TTGAATACTTTAAG
* * * * * *
24563557 GAACCGAAGTTACAAAAGAACTTGTAAAAGTTTGACAAGTTAAGAAGTTAGATCAAGGACCAAGA
323 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGA
* * *
24563622 GAGAAACAATTCTCACATAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTATACAAAATGACAA
388 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* *
24563687 ACTATATAGACCAAATGATGCGATTTCCCGAGCA-AGAATTGTTC-AAAAATTGCTCGAAGGAAT
453 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA-TGTTCGAAAAATTGCTCGAAGGAAT
* * * *
24563750 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTCGTCAATGTTTGACTAGTTCG
517 GGATCGTCTTGAATACTTTAAGGAACCGAAGTT-ATAAAGAACTCGTAAAAGTTTGACAAGTTCG
** * * *
24563815 GAAGTTCATCCATGAACC-A-AGAG--A-AATTCTCACGTAAATAAGTTATTAATTTAAAAGACA
581 GAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTCAAAGAC-
24563875 AA
644 -A
*
24563877 AAGTTGTTTACAAAATGTCAAACTATTTA
1 AAGTTGTTTACAAAATGACAAACTATTTA
24563906 TGATACGAAA
Statistics
Matches: 3287, Mismatches: 515, Indels: 190
0.82 0.13 0.05
Matches are distributed among these distances:
639 25 0.01
640 197 0.06
641 262 0.08
642 362 0.11
643 155 0.05
644 176 0.05
645 722 0.22
646 263 0.08
647 407 0.12
648 496 0.15
649 137 0.04
650 43 0.01
651 42 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (644 bp):
AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
GTAAAAGTTTGACAAGTTCAGAAGTTTGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
TTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGAGAG
AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
TCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACA
Found at i:24564955 original size:39 final size:39
Alignment explanation
Indices: 24564912--24565002 Score: 137
Period size: 39 Copynumber: 2.3 Consensus size: 39
24564902 TTAAATAGGG
* *
24564912 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAACAATTGT
* * *
24564951 TTTTAACGTGTCCTAGTTTGATACATATTTAGCAATTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAACAATTGT
24564990 TTTTAATGTGTCT
1 TTTTAATGTGTCT
24565003 AAGATTGAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.52
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACATATTTAACAATTGT
Found at i:24566527 original size:216 final size:216
Alignment explanation
Indices: 24566028--24569775 Score: 4349
Period size: 216 Copynumber: 17.5 Consensus size: 216
24566018 ATCGTATCAT
* * ** *
24566028 GTAAATAAGTTTTTTAATTTAAAAACCAAAAGTTGTTTACAAAATGAGTAACAATTTAGACCAAA
1 GTAAATAAG-TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * * *
24566093 TGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGATTAC
65 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * * * * * *
24566158 TTCAAGGAACCAAAGTTATAAAAGAACTCGTAACAGTTTGACATGTT-CGAAAGTTCGGCCATGA
130 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAG-AAGTTAGGCCAAGA
* *
24566222 ACCAAGAGAGAAACTATTCTTAC
194 ACCAAGAGAGAAACAATTCTCAC
* *
24566245 -TTAATAAGTTTTTAATTCAAAGACCAAAAGTTGCTTACAAAATGACAAACTATTTAGACCAAAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * *** * *
24566309 GATTCGATTTCCCTAGCATGAAAAGTTCGGAAAATTAAACAAATGAATGGATCATCTTGAATACT
66 GATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT
* * * * * * * *
24566374 TAAAAGAACCGAAGTTGTAAAAGAACCCGTAAATGTTTGACAAGTTAAGAAGTTAGGTCGAGGAC
131 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGAAC
24566439 CAAGAGAGAAACAATTCTCAC
196 CAAGAGAGAAACAATTCTCAC
* * *
24566460 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATAGGCTAAAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * **
24566525 GATGCGGTTTCCTGAGCAAGGAATGTTTGGAAAATTGCTAAAAGGAATGGATCATCTAT-AATAC
66 GATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCT-TGAATAC
* * ** * *
24566589 TTTAAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAA
130 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGAA
24566654 CC-A-AGAG--A-AATTCTCAC
195 CCAAGAGAGAAACAATTCTCAC
* ** * *
24566671 GTAAATAAGTTATTAATTTTAAGACAAAAAGTTGTTTACAAAATGGCAAACTATTTAGACCAAAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * * * *
24566736 TATGCGATTTCCCGTGCACGAAATG-TCTGGAAAATTGCTC-AAAGACTGGATCGTCTTGAATAC
66 GATGCGATTTCCCGAGCATGGAATGTTC-GGAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* *
24566799 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGTTAAGAAGTTAGGCCAAGGA
130 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGAA
* *
24566863 GCACGAGAGAAACAATTCTCAC
195 CCAAGAGAGAAACAATTCTCAC
*** * *
24566885 GTAAA-AA-AAATTAATTCAAAGACCAAAATTTGTTTACAAAATCACAAACTATTTAGACC-AAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * *
24566947 GATGCGATTTCCAGAGGATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGATTACT
66 GATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT
* * *
24567012 TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAC--------AAGTTCGGCCATGAAC
131 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGAAC
*
24567069 CAAGAGTGAAACAATTCTCAC
196 CAAGAGAGAAACAATTCTCAC
* * * *
24567090 -TTAATAATTTTTTAATTTAAAGACCAAAAGTTATTTACAAAATGACAAA-TCATTTAGACCAAA
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT-ATTTAGACCAAA
* * * * * * * *
24567153 TGATACGATTTCTCGAGCATGGAAAGTTCAGAAAATTACTCAAATGAATGGATCGTCTTGAATAC
65 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * * * * * *
24567218 -TTAGAAGAACCGGAGTTGTAAAATAACTCGTAAAAATTTGACAAGTTAAGAAGTTAGCCCAAGG
130 TTTA-AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGA
*
24567282 ACCAAGAGAGAAACAATTATCAC
194 ACCAAGAGAGAAACAATTCTCAC
* * * *
24567305 GCAAATACA-TTTTTAATTCAAAGACCAAAAGATATTTACAAAATGACATACTATTTAGACCAAA
1 GTAAATA-AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* ** * * *
24567369 TGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATGGCTCGAAGGAATGGATCGTCTTGAACAC
65 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* *
24567434 TTT-AGGAGCTGAAGTTATAAAAG-ACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGGA
130 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAA-GA
24567497 A-CAAGAGAGAAACAATTCTCAC
194 ACCAAGAGAGAAACAATTCTCAC
* * *
24567519 ATAAA-AA-ATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAAACTATTTAGACCAAAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
** * * * * * *
24567582 GATGCGA-TTCCAAAGCATGAAATGTTTGGCAAATTACGCGAAGGAATGGATCATCTTGAATATT
66 GATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT
** * * *
24567646 TTAAGGAACCGAAGTTATAAACA-AACTCGTAAAAGTTTGACAAGACAAAAAAGTTTGACCAAGA
131 TTAAGGAACCGAAGTTATAAA-AGAACTCGTAAAAGTTTGACAAG-TTAAGAAGTTAGGCCAAGA
*
24567710 ACCAAGAGAGAAA-AATTCTTAC
194 ACCAAGAGAGAAACAATTCTCAC
* * **
24567732 GTAAATAAGTTTTTAATGCAAAGACCAAAAGTTATTTACAAAATGAC-AACTATTTAGACCACGT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
*** * *
24567796 GATGCGATTTCGAAAGCATGAAATGTT-TGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT
66 GATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT
** * *
24567860 TTAAGGAACC-AGAGTTATAAACA-AACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGACCAAGA
131 TTAAGGAACCGA-AGTTATAAA-AGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGA
*
24567923 ACCAAGAGAGAAATAATTCTCAC
194 ACCAAGAGAGAAACAATTCTCAC
* * *
24567946 GTAAATAAGTTTTTTATTCAAAGACCAAAAGTTGTTTACAAAACGAAAAACTATTTAGACCAAAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* *
24568011 GATGCGATTTCCCGAGCATGGAATGTTCGAAAAAAATT--TCGAAGGAATGGATCATCTTGAGTA
66 GATGCGATTTCCCGAGCATGGAATGTTCG--GAAAATTGCTCGAAGGAATGGATCATCTTGAATA
* * * *
24568074 CTATAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTGGGCCAAGA
129 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGA
**
24568139 ACCAAGAGAGAAACAACACTCAC
194 ACCAAGAGAGAAACAATTCTCAC
** * * * *
24568162 GTAAATAAGTTTTTAATTCAAAGAAAAAAAATTGCTTACAAAATGACAAACTATTTAGGCCAATT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * * * *
24568227 GATGCGATTTCCCGATCATGTAATGTTCAGCATATTGCTCGAATGAATGGATCATATTGAATACT
66 GATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT
* ** ** *
24568292 TTAAGGAACCGAAGTAATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATTTTTGGCCAAGAAC
131 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGAAC
24568357 CAAGAGAGAAACAATTCTCAC
196 CAAGAGAGAAACAATTCTCAC
* *
24568378 GTAAATAAGTTTTTAATTCAAAGTCCAAAAGTTGTTTACAAAGTGACAAACTATTTAGACCAAAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * *
24568443 GATGCGATTACCCGAGCATGGAATGTTC-GAAAAGTTGCTCGAAGAAATGGATCGTATTGAAAAC
66 GATGCGATTTCCCGAGCATGGAATGTTCGGAAAA-TTGCTCGAAGGAATGGATCATCTTGAATAC
* * * * * * *
24568507 TTTAAGGAACCAAAGTTATAAAAGAAATTGTAAAAGTTTGACAAATTAAGAAGTTATGCCGAGGA
130 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGAA
24568572 CCAAGAGAGAAACAATTCTCAC
195 CCAAGAGAGAAACAATTCTCAC
* **
24568594 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAGTATACAGACCAAAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * *
24568659 GATGCGATTTCTCGAGCAAGGAATGTTC-GAAAAATGCTCGAAGGAATGGATCATCTTGAACACT
66 GATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT
* * * *
24568723 TTAAGGAACCGAAGTTATAAAAAAACTCGTAAATGTTTGACAAGTTAAGAAGTTAGGCCAAGGAG
131 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGAAC
24568788 CAAGAGAGAAACAATTCTCAC
196 CAAGAGAGAAACAATTCTCAC
* *
24568809 GTAAATAATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATAGACCAAAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * *
24568874 GAAGCGA-TTCCCGAGCAAGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCTTGAATACT
66 GATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT
* * * ** ** * *
24568938 GTAAGGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACGTGTTTGGAAGTTCGTCCAAGAAC
131 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGAAC
24569003 C-A-AGAG-AA-AA-TCTCAC
196 CAAGAGAGAAACAATTCTCAC
* * * * * *
24569019 GTAAATTAGTTATTAACTT-AAAGACAAAAACTTGTTTACAAAATGGCAACCTATTTTAGACCAA
1 GTAAATAAGTTTTTAA-TTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-TTTAGACCAA
* * * *
24569083 ATTATGCGATTTCCC-ATTCATGGAATG-TCTGGAATATTGCTCGAAGGACTGGATCATCTTGAA
64 ATGATGCGATTTCCCGA-GCATGGAATGTTC-GGAAAATTGCTCGAAGGAATGGATCATCTTGAA
* * * * * ** *
24569146 TACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTGTGAGAAGTT-CGAAAGTTTGTTCG
127 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAG-AAGTTAGGCCA
*
24569210 GGAA-CAAGAGAGAAACAATTCTCAC
191 AGAACCAAGAGAGAAACAATTCTCAC
* *
24569235 GTAAATAAGTTTTTAATT-ATAAGACCAAAATTTGTTTACAAAATGACAAACTCTTTAGACCAAA
1 GTAAATAAGTTTTTAATTCA-AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
** * * *
24569299 TGATATGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCATCTTGAATAC
65 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * * * * * *
24569364 TTTAATGAACCGAAGTTATAAAAGAACTAGTAAAATTTTGACAAGCTCAGAAGTTCA-TCAAAAG
130 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTT-AGGC-CAAG
* **
24569428 AA-CAAGAGAGAAACATTTCTTTC
193 AACCAAGAGAGAAACAATTCTCAC
* * * *
24569451 GTAAATAAGTTTTTAACTT-AAAAACCAAAAGTTGTTTACAAAATGACTAACAATTTAAACCAAA
1 GTAAATAAGTTTTTAA-TTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * ** * *
24569515 TGATGTGATTTCCCGAGGATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGATTAC
65 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * * * **
24569580 TTTAAGGAACCAAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCTTGAA
130 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGAA
*
24569644 CCTAGAGAGAAACAATTCTCAC
195 CCAAGAGAGAAACAATTCTCAC
* *
24569666 -TTAATAAGTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAAA
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC---A
* * * *
24569730 AATAATGCGATTTCCC-AACATGGAAAGTTTGGAAAATTGCTCGAAG
63 AATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
24569776 AACTCGTAAA
Statistics
Matches: 3009, Mismatches: 447, Indels: 151
0.83 0.12 0.04
Matches are distributed among these distances:
204 3 0.00
205 34 0.01
206 46 0.02
207 88 0.03
209 26 0.01
210 100 0.03
211 203 0.07
212 273 0.09
213 83 0.03
214 327 0.11
215 733 0.24
216 1063 0.35
217 24 0.01
218 6 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (216 bp):
GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
GATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT
TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGAAC
CAAGAGAGAAACAATTCTCAC
Found at i:24568129 original size:857 final size:857
Alignment explanation
Indices: 24566028--24570862 Score: 5125
Period size: 857 Copynumber: 5.7 Consensus size: 857
24566018 ATCGTATCAT
* * ** *
24566028 GTAAATAAGTTTTTTAATTTAAAAACCAAAAGTTGTTTACAAAATGAGTAACAATTTAGACCAAA
1 GTAAATAAG-TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * *
24566093 TGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGATTAC
65 TGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGATTAC
* * *
24566158 TTCAAGGAACCAAAGTTATAAAAGAACTCGTAACAGTTTGACATGTTC-GAAAGTTCGGCCATGA
129 TTTAAGGAACCAAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGGCCATGA
* * * *
24566222 ACCAAGAGAGAAACTATTCTTACTTAATAAGTTTTTAATTCAAAGACCAAAAGTTGCTTACAAAA
192 ACCAAGAGAGAAACAATTCTCACTTAATAAGTTTTTTATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * **
24566287 TGACAAACTATTTAGACCAAATGATTCGATTTCCCTAGCATGAAAAGTTCG-GAAAATTAAACAA
257 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTTCGAAAAAATT-GTCAA
* * * * *
24566351 ATGAATGGATCATCTTGAATACTTAAAAGAACCGAAGTTGTAAAAGAACCCGTAAATGTTTGACA
321 AGGAATGGATCATCTTGAATACTT-AAAGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * *
24566416 AGTTAAGAAGTTAGGTCGAGGACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
385 AGTTAAGAAGTTAGGCCAAGAACCAAGAGAGAAACAA-TATCACGTAAATAAGTTTTTAATTCAA
* * * * * * *
24566481 AGACCAAAAGTTGTTTACAAAATGACAAACTATATAGGCTAAATGATGCGGTTTCCTGAGCAAGG
449 AGACAAAAAGATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAGCATGG
** **
24566546 AATGTTTGGAAAATTGCTAAAAGGAATGGATCATCTAT-AATACTTTAAGGAACCGAAGTTATAA
513 AATGTTCAGAAAATTGCTCGAAGGAATGGATCATCT-TGAATACTTTAAGGAACCGAAGTTATAA
* * * * *
24566610 AAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA-AGAG--A-AATTCTCAC
577 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTTGGCCAAGAACAAGAGAGAAACAATTCTCAC
* ** * *
24566671 GTAAATAAGTTATTAATTTTAAGACAAAAAGTTGTTTACAAAATGGCAAACTATTTAGACCAAAT
642 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * * * * *
24566736 TATGCGATTTCCCGTGCACGAAATGTCTGGAAAATTGCTC-AAAGACTGGATCGTCTTGAATACT
707 GATGCGATTTCCAGAGCATGAAATGTTTGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT
* * * * * *
24566800 TTAAGGAATCGAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGTTAAGAAGTTAGGCCAAGGAG
772 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGCTAAGAAGTTTGACCAAGAAC
*
24566864 CACGAGAGAAACAATTCTCAC
837 CAAGAGAGAAACAATTCTCAC
*** * *
24566885 GTAAA-AA-AAATTAATTCAAAGACCAAAATTTGTTTACAAAATCACAAACTATTTAGACC-AAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* *
24566947 GATGCGATTTCCAGAGGATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGATTACT
66 GATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGATTACT
24567012 TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG---A---C--AAGTTCGGCCATGAAC
130 TTAAGGAACCAAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCATGAAC
* * *
24567069 CAAGAGTGAAACAATTCTCACTTAATAA-TTTTTTAATTTAAAGACCAAAAGTTATTTACAAAAT
194 CAAGAGAGAAACAATTCTCACTTAATAAGTTTTTT-ATTCAAAGACCAAAAGTTGTTTACAAAAT
* * * *
24567133 GACAAA-TCATTTAGACCAAATGATACGATTTCTCGAGCATGGAAAGTTC-AGAAAATTACTCAA
258 GACAAACT-ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTTCGAAAAAATT-GTCAA
* * ** * * *
24567196 ATGAATGGATCGTCTTGAATACTTAGAAGAACCGGAGTTGTAAAATAACTCGTAAAAATTTGACA
321 AGGAATGGATCATCTTGAATACTTA-AAGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * *
24567261 AGTTAAGAAGTTAGCCCAAGGACCAAGAGAGAAACAATTATCACGCAAATACA-TTTTTAATTCA
385 AGTTAAGAAGTTAGGCCAAGAACCAAGAGAGAAACAA-TATCACGTAAATA-AGTTTTTAATTCA
* * *
24567325 AAGACCAAAAGATATTTACAAAATGACATACTATTTAGACCAAATGATGCGATTTCTCGAGCATG
448 AAGACAAAAAGATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATG
* * * * * *
24567390 GAATGTTCAAAAAATGGCTCGAAGGAATGGATCGTCTTGAACACTTT-AGGAGCTGAAGTTATAA
512 GAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAA
** *
24567454 AAG-ACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGCCAAGGAACAAGAGAGAAACAATTCTCA
577 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTTGGCCAA-GAACAAGAGAGAAACAATTCTCA
* * *
24567518 CATAAA-AA-ATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAAACTATTTAGACCAAA
641 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * *
24567581 TGATGCGA-TTCCAAAGCATGAAATGTTTGGCAAATTACGCGAAGGAATGGATCATCTTGAATAT
706 TGATGCGATTTCCAGAGCATGAAATGTTTGGAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* *
24567645 TTTAAGGAACCGAAGTTATAAACA-AACTCGTAAAAGTTTGACAAGACAAAAAAGTTTGACCAAG
771 TTTAAGGAACCGAAGTTATAAA-AGAACTCGTAAAAGTTTGACAAG-CTAAGAAGTTTGACCAAG
*
24567709 AACCAAGAGAGAAA-AATTCTTAC
834 AACCAAGAGAGAAACAATTCTCAC
* * **
24567732 GTAAATAAGTTTTTAATGCAAAGACCAAAAGTTATTTACAAAATGAC-AACTATTTAGACCACGT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
*** * * * *
24567796 GATGCGATTTCGAAAGCATGAAATGTTTGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTT
66 GATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGATTACTT
* ** * *
24567861 TAAGGAACCAGAGTTATAAACAAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGACCAAGAACC
131 TAAGGAACCAAAGTTATAAA-AAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCATGAACC
* * *
24567926 AAGAGAGAAATAATTCTCACGTAAATAAGTTTTTTATTCAAAGACCAAAAGTTGTTTACAAAACG
195 AAGAGAGAAACAATTCTCAC-TTAATAAGTTTTTTATTCAAAGACCAAAAGTTGTTTACAAAATG
* * *
24567991 AAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAAAATT-TCGAAG
259 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTTCG-AAAAAATTGTCAAAG
* *
24568055 GAATGGATCATCTTGAGTACTATAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
323 GAATGGATCATCTTGAATACT-TAAAGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * *
24568120 TTCAGAAGTTGGGCCAAGAACCAAGAGAGAAACAACACTCACGTAAATAAGTTTTTAATTCAAAG
387 TTAAGAAGTTAGGCCAAGAACCAAGAGAGAAACAATA-TCACGTAAATAAGTTTTTAATTCAAAG
* * * * * *
24568185 A-AAAAAAATTGCTTACAAAATGACAAACTATTTAGGCCAATTGATGCGATTTCCCGATCATGTA
451 ACAAAAAGA-TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGGA
* * * * *
24568249 ATGTTCAGCATATTGCTCGAATGAATGGATCATATTGAATACTTTAAGGAACCGAAGTAATAAAA
514 ATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAA
**
24568314 GAACTCGTAAAAGTTTGACAAGTTCGGATTTTTGGCCAAGAACCAAGAGAGAAACAATTCTCACG
579 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTTGGCCAAGAA-CAAGAGAGAAACAATTCTCACG
* *
24568379 TAAATAAGTTTTTAATTCAAAGTCCAAAAGTTGTTTACAAAGTGACAAACTATTTAGACCAAATG
643 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * * * *
24568444 ATGCGATTACCCGAGCATGGAATG-TTCGAAAAGTTGCTCGAAGAAATGGATCGTATTGAAAACT
708 ATGCGATTTCCAGAGCATGAAATGTTTGGAAAA-TTGCTCGAAGGAATGGATCATCTTGAATACT
* * * ** * *
24568508 TTAAGGAACCAAAGTTATAAAAGAAATTGTAAAAGTTTGACAAATTAAGAAGTTATG-CCGAGGA
772 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGCTAAGAAGTT-TGACCAAGAA
24568572 CCAAGAGAGAAACAATTCTCAC
836 CCAAGAGAGAAACAATTCTCAC
* **
24568594 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAGTATACAGACCAAAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * **
24568659 GATGCGATTTCTCGAGCAAGGAATGTTCGAAAAATGCTCGAAGGAATGGATCATCTTGAACACTT
66 GATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGATTACTT
* * * * * * *
24568724 TAAGGAACCGAAGTTATAAAAAAACTCGTAAATGTTTGACAAGTTAAGAAGTTAGGCCAAGGAGC
131 TAAGGAACCAAAGTTAT-AAAAAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCATGAACC
*
24568789 AAGAGAGAAACAATTCTCACGTAAATAA-TTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
195 AAGAGAGAAACAATTCTCAC-TTAATAAGTTTTTT-ATTCAAAGACCAAAAGTTGTTTACAAAAT
* * * * *
24568853 GACAAACTATATAGACCAAATGAAGCGA-TTCCCGAGCAAGGAATGTTCG-AAAAATTGGTCGAA
258 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTTCGAAAAAATT-GTCAAA
* * **
24568916 GGAATGGATCATCTTGAATACTGTAAGGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACGT
322 GGAATGGATCATCTTGAATACT-TAAAGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
** * * * * *
24568981 GTTTGGAAGTTCGTCCAAGAACC-A-AGAG-AA-AATCTCACGTAAATTAGTTATTAACTT-AAA
386 GTTAAGAAGTTAGGCCAAGAACCAAGAGAGAAACAATATCACGTAAATAAGTTTTTAA-TTCAAA
** * * * * *
24569041 GACAAAAACTTGTTTACAAAATGGCAACCTATTTTAGACCAAATTATGCGATTTCCCATTCATGG
450 GACAAAAAGATGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCCGA-GCATGG
* * * *
24569106 AATG-TCTGGAATATTGCTCGAAGGACTGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAA
513 AATGTTC-AGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * ** **
24569170 AAGAACTCGTAAAAGTGTGAGAAGTTCGAAAGTTTGTTCGGGAACAAGAGAGAAACAATTCTCAC
577 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTTGGCCAAGAACAAGAGAGAAACAATTCTCAC
* *
24569235 GTAAATAAGTTTTTAATT-ATAAGACCAAAATTTGTTTACAAAATGACAAACTCTTTAGACCAAA
642 GTAAATAAGTTTTTAATTCA-AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
** * * * *
24569299 TGATATGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCATCTTGAATAC
706 TGATGCGATTTCCAGAGCATGAAATGTTTGGAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * * * * *
24569364 TTTAATGAACCGAAGTTATAAAAGAACTAGTAAAATTTTGACAAGCTCAGAAG-TTCATCAAAAG
771 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGCTAAGAAGTTTGA-C-CAAG
* **
24569428 AA-CAAGAGAGAAACATTTCTTTC
834 AACCAAGAGAGAAACAATTCTCAC
* * * *
24569451 GTAAATAAGTTTTTAACTT-AAAAACCAAAAGTTGTTTACAAAATGACTAACAATTTAAACCAAA
1 GTAAATAAGTTTTTAA-TTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * *
24569515 TGATGTGATTTCCCGAGGATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGATTAC
65 TGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGATTAC
* * *
24569580 TTTAAGGAACCAAAGTTATAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCTTGAAC
129 TTTAAGGAACCAAAGTTATAAAAAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCATGAAC
* * *
24569645 CTAGAGAGAAACAATTCTCACTTAATAAGTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATG
194 CAAGAGAGAAACAATTCTCACTTAATAAGTTTTTTATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * *
24569710 ACAAACTATTTAGACCAAAAAATAATGCGATTTCCC-AACATGGAAAGTTTG-GAAAATTGCTC-
259 ACAAACTATTTAGACC---AAATGATGCGATTTCCCGAGCATGGAAAGTTCGAAAAAATTG-TCA
* * * * * * *
24569772 ---GAA--GAAC-TCGT-AAAAGTT--TG-A-C-AAG-T-T--AAGAA---GT-----TATG-CC
320 AAGGAATGGATCATCTTGAATACTTAAAGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACA
** * **** * *
24569812 A--T--G--G--A--CCAAGAGAGAAACA-ATTCTCAAGTA-AAC--AAGT---T-TTTAATTCA
385 AGTTAAGAAGTTAGGCCAAGA-ACCAAGAGAGAAACAA-TATCACGTAAATAAGTTTTTAATTCA
* * * * *
24569859 AAGACCAAAAGATGTTTACAAAATGACATACTATTTAGACCAAATGATACAATTTCCTGGGCATG
448 AAGACAAAAAGATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAGCATG
* * * *
24569924 GAATGTTC-GAAAATTGCTTGCAGGAATGGATCATCTTGAATACTTTAAGAAACCAAAGTTATAA
512 GAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAA
* * ** *
24569988 AAGAACTCGTAAAATTTTGGCAAGTTAAGAA-TTTAGGCCAAGGAGCAAGAGAGAAACAATTCTC
577 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTT-GGCCAA-GAACAAGAGAGAAACAATTCTC
*** * * * *
24570052 ACGTAAA-AA-AACTTAATTCAAAAAGCAAAAGTTGTTTACAAAATCACAGACT-TTTAGACCAA
640 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * ** * *
24570114 ATGATGCAATTTCCAAAGCATAAAATGTTCAGCAAATTGCTCGAAGGAATGGATCGTCTTGAATA
705 ATGATGCGATTTCCAGAGCATGAAATGTTTGGAAAATTGCTCGAAGGAATGGATCATCTTGAATA
* **
24570179 CTTTAAGGAACCGAAGTTATAAACA-AACTCGTAAAAGTTTGACAAGATCGGAAGTTTGACCAAG
770 CTTTAAGGAACCGAAGTTATAAA-AGAACTCGTAAAAGTTTGACAAGCTAAGAAGTTTGACCAAG
* *
24570243 AACCAAGAGAGAAACAATTCTTAT
834 AACCAAGAGAGAAACAATTCTCAC
* *
24570267 GTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTATTTACAAAATGACAAACTATTTAGACCAAAT
1 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * * * **
24570332 GATGTGATTT-CCAAGCATGAAATGTTTGGAAAGTTGCTCGAAGGAATGGATCATCTTGAACACT
66 GATGCGATTTCCCGAGCATGGAATG-TTCGAAAATTGCTCGAAGGAATGGATCGTCTTGATTACT
* * * * * *
24570396 TTAAGGAACTAGAGTTATAAACAAACTCGTAAAAGTTTAACAAGTTCAAAAGTTCGACCAAGAA-
130 TTAAGGAACCAAAGTTATAAA-AAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCATGAAC
* * * *
24570460 CAA-AGAGAAACAATTCTCACGTAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTT-TAAAAT
194 CAAGAGAGAAACAATTCTCAC-TTAATAAGTTTTTTATTCAAAGACCAAAAGTTGTTTACAAAAT
* * * * *
24570523 GAAAAACTATTTAGACCAAATGATGC-AATTCCCGAACATGGAATGCTCG-AAAAATAT-TCAAA
258 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTTCGAAAAAAT-TGTCAAA
* * * * *
24570585 GGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAAAACTCGTAAAAGTTTGAAAA
322 GGAATGGATCATCTTGAATAC-TTAAAGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
** * * * *
24570650 GTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAGTACTCATGTAAATAATTTTTTAATTCAAA
386 GTTAAGAAGTTAGGCCAAGAACCAAGAGAGAAACAATA-TCACGTAAATAAGTTTTTAATTCAAA
* * ** ** * * *
24570715 GACCAAAAGTTGTTTACAAAATGGTAAACTATTTAGTGCAAATGATGTGATTTCTAGAGAATGGA
450 GACAAAAAGATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATGGA
** * * * * *
24570780 ATGTTTGGAAAATTGCTCGAATGAATGGATCGTATTGAATACTTTAAGGAATCGAAGTAATAAAA
514 ATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* *
24570845 GAATTCATAACAAGTTTG
579 GAACTCGTAA-AAGTTTG
24570863 GATTTTGGCC
Statistics
Matches: 3343, Mismatches: 494, Indels: 283
0.81 0.12 0.07
Matches are distributed among these distances:
810 8 0.00
811 25 0.01
812 1 0.00
814 41 0.01
815 103 0.03
816 238 0.07
817 43 0.01
818 81 0.02
819 62 0.02
820 34 0.01
821 2 0.00
822 7 0.00
823 2 0.00
824 8 0.00
825 2 0.00
826 6 0.00
827 1 0.00
828 5 0.00
830 1 0.00
831 2 0.00
832 1 0.00
833 3 0.00
836 3 0.00
837 1 0.00
838 2 0.00
839 1 0.00
841 6 0.00
843 33 0.01
844 32 0.01
845 358 0.11
846 115 0.03
847 37 0.01
848 123 0.04
849 57 0.02
850 4 0.00
851 5 0.00
852 3 0.00
853 104 0.03
854 110 0.03
855 61 0.02
856 100 0.03
857 654 0.20
858 211 0.06
859 94 0.03
860 18 0.01
861 91 0.03
862 240 0.07
863 201 0.06
864 3 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (857 bp):
GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
GATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGATTACTT
TAAGGAACCAAAGTTATAAAAAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCATGAACCA
AGAGAGAAACAATTCTCACTTAATAAGTTTTTTATTCAAAGACCAAAAGTTGTTTACAAAATGAC
AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTTCGAAAAAATTGTCAAAGGAA
TGGATCATCTTGAATACTTAAAGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAA
GAAGTTAGGCCAAGAACCAAGAGAGAAACAATATCACGTAAATAAGTTTTTAATTCAAAGACAAA
AAGATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGTTCA
GAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
TAAAAGTTTGACAAGTTCGGAAGTTTGGCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
TCCAGAGCATGAAATGTTTGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC
CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGCTAAGAAGTTTGACCAAGAACCAAGAGAGA
AACAATTCTCAC
Found at i:24570382 original size:215 final size:216
Alignment explanation
Indices: 24569776--24570843 Score: 1248
Period size: 213 Copynumber: 5.0 Consensus size: 216
24569766 TTGCTCGAAG
* * * *
24569776 AACTCGTAAAAGTTTGACAAGTTAAGAAGTTATG-CCATGGACCAAGAGAGAAACAATTCTCAAG
1 AACTCGTAAAAGTTTGACAAGTTCAGAAGTT-TGACCAAGAACCAAGAGAGAAACAATTCTCACG
* * *
24569840 TAAACAAGTTTTTAATTCAAAGACCAAAAGATGTTTACAAAATGACATACTATTTAGACCAAATG
65 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* *** * * * *
24569905 ATACAATTTCCTGGGCATGGAATG-TTCGAAAATTGCTTGCAGGAATGGATCATCTTGAATACTT
130 ATGCAATTTCCAAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* *
24569969 TAAGAAACCAAAGTTATAAA-A
195 TAAGGAACCGAAGTTATAAACA
* * * * * *
24569990 GAACTCGTAAAATTTTGGCAAGTTAAGAA-TTTAGGCCAAGGAGCAAGAGAGAAACAATTCTCAC
1 -AACTCGTAAAAGTTTGACAAGTTCAGAAGTTT-GACCAAGAACCAAGAGAGAAACAATTCTCAC
*** * * * *
24570054 GTAAA-AA-AACTTAATTCAAAAAGCAAAAGTTGTTTACAAAATCACAGACT-TTTAGACCAAAT
64 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
** ** *
24570116 GATGCAATTTCCAAAGCATAAAATGTTCAGCAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
129 GATGCAATTTCCAAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
24570181 TTAAGGAACCGAAGTTATAAACA
194 TTAAGGAACCGAAGTTATAAACA
* * * *
24570204 AACTCGTAAAAGTTTGACAAGATCGGAAGTTTGACCAAGAACCAAGAGAGAAACAATTCTTATGT
1 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTTGACCAAGAACCAAGAGAGAAACAATTCTCACGT
* *
24570269 AAATAAGTTTTTAATTCAAAGAGCAAAAGTTATTTACAAAATGACAAACTATTTAGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
** * * * *
24570334 TGTGATTTCC-AAGCATGAAATGTTTGGAAAGTTGCTCGAAGGAATGGATCATCTTGAACACTTT
131 TGCAATTTCCAAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
*
24570398 AAGGAA-CTAGAGTTATAAACA
196 AAGGAACCGA-AGTTATAAACA
* * *
24570419 AACTCGTAAAAGTTTAACAAGTTCAAAAGTTCGACCAAGAA-CAA-AGAGAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTTGACCAAGAACCAAGAGAGAAACAATTCTCACGT
* * *
24570482 AAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTT-TAAAATGAAAAACTATTTAGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * * * *
24570546 TGCAATTCCCGAA-CATGGAATGCTCGAAAAATAT--TCAAAGGAATGGATCGTCTTGAATACTT
131 TGCAATTTCCAAAGCATGGAATGTTTGGAAAAT-TGCTCGAAGGAATGGATCGTCTTGAATACTT
*
24570608 TAAGGAACCGAAGTTATAAAAA
195 TAAGGAACCGAAGTTATAAACA
* * * * * * *
24570630 AACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAGTACTCATGT
1 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTTGACCAAGAACCAAGAGAGAAACAATTCTCACGT
* ** **
24570695 AAATAATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGGTAAACTATTTAGTGCAAATGA
66 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
** * * * * *
24570760 TGTGATTTCTAGAGAATGGAATGTTTGGAAAATTGCTCGAATGAATGGATCGTATTGAATACTTT
131 TGCAATTTCCAAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* *
24570825 AAGGAATCGAAGTAATAAA
196 AAGGAACCGAAGTTATAAA
24570844 AGAATTCATA
Statistics
Matches: 726, Mismatches: 109, Indels: 35
0.83 0.13 0.04
Matches are distributed among these distances:
211 78 0.11
212 84 0.12
213 243 0.33
214 48 0.07
215 208 0.29
216 65 0.09
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.27
Consensus pattern (216 bp):
AACTCGTAAAAGTTTGACAAGTTCAGAAGTTTGACCAAGAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
TGCAATTTCCAAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
AAGGAACCGAAGTTATAAACA
Found at i:24574471 original size:24 final size:24
Alignment explanation
Indices: 24574444--24574489 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
24574434 ATACAAGTTA
*
24574444 AGAA-GTAAATCTGTCAGCGCAATC
1 AGAATGTAAAT-TGTCAGAGCAATC
*
24574468 AGAATGTTAATTGTCAGAGCAA
1 AGAATGTAAATTGTCAGAGCAA
24574490 ATTGTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (24 bp):
AGAATGTAAATTGTCAGAGCAATC
Found at i:24577099 original size:9 final size:8
Alignment explanation
Indices: 24577074--24577116 Score: 50
Period size: 9 Copynumber: 4.9 Consensus size: 8
24577064 GGGCAATGCT
24577074 TTCTTCGTC
1 TTCTTC-TC
24577083 TTTCTTCTC
1 -TTCTTCTC
24577092 TTCTTTCTC
1 TTC-TTCTC
24577101 TTCTTCTC
1 TTCTTCTC
24577109 TTGCTTCT
1 TT-CTTCT
24577117 TCATCTCGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 10 0.32
9 15 0.48
10 6 0.19
ACGTcount: A:0.00, C:0.33, G:0.05, T:0.63
Consensus pattern (8 bp):
TTCTTCTC
Found at i:24578593 original size:23 final size:23
Alignment explanation
Indices: 24578547--24578593 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
24578537 TACGAGCCAT
*
24578547 GAGTACTGAAATAAAAAGAGTAA
1 GAGTACTGAAATAAAAACAGTAA
*
24578570 GAGTATCTGACATAAAAACA-TAA
1 GAGTA-CTGAAATAAAAACAGTAA
24578593 G
1 G
24578594 GTTTGAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.53, C:0.09, G:0.19, T:0.19
Consensus pattern (23 bp):
GAGTACTGAAATAAAAACAGTAA
Found at i:24582157 original size:411 final size:411
Alignment explanation
Indices: 24581395--24582220 Score: 1526
Period size: 411 Copynumber: 2.0 Consensus size: 411
24581385 TTACCACTGT
* *
24581395 GATGCCACTCTTCTTAGGCACATATTGGACCGGGCTCACCCATGTGCTGTTCGAAATGGGATAGA
1 GATGCCACTCTTCTTACGCACATATTGGACCGGGCTCACCCATGTGCTGTCCGAAATGGGATAGA
24581460 TGATGTCTGCGTCCAACCACTTAATAATCTCCTTCTTCACTACTTCTTTCATTTTTTCATTCAGT
66 TGATGTCTGCGTCCAACCACTTAATAATCTCCTTCTTCACTACTTCTTTCATTTTTTCATTCAGT
24581525 CTTCGTTGTTGCTTAATGGACTGTTTCCCTTCATCTTCCATCCTAATCTTATGCATGCAGAAAGA
131 CTTCGTTGTTGCTTAATGGACTGTTTCCCTTCATCTTCCATCCTAATCTTATGCATGCAGAAAGA
*
24581590 ACGACTAATGCCTCTAATGTCTGCTATGCTCCAGGCAATAACTCTTTTATGTTGCTTTAGTATTT
196 ACAACTAATGCCTCTAATGTCTGCTATGCTCCAGGCAATAACTCTTTTATGTTGCTTTAGTATTT
* *
24581655 CGATTACTTTTTCTTCTTGGCATGCGTCGAGACTTGCGCTGACACTTACAGGCAATGTTTCATTG
261 CGATTAATTTTTCTTCTTGGCATGCGTCGAGACTTGCGCTGACAATTACAGGCAATGTTTCATTG
*
24581720 TCACCAAGGAAAACATGTCACCTAGGAAACCATACTTCAGGTGCATTGACAATGGCTTTAACTCT
326 TCACCAAGGAAAACATGTCACCTAGGAAACCATACTTCAGGTGCATCGACAATGGCTTTAACTCT
**
24581785 AGAGTCAGAGCTTTTTTAATC
391 AGAGTCAGAAATTTTTTAATC
24581806 GATGCCACTCTTCTTACGCACATATTGGACCGGGCTCACCCATGTGCTGTCCGAAATGGGATAGA
1 GATGCCACTCTTCTTACGCACATATTGGACCGGGCTCACCCATGTGCTGTCCGAAATGGGATAGA
* *
24581871 TGATGTCTGCGTCTAACCACTTAATAATCTCCTTCTTCACTACTTCTTTCTTTTTTTCATTCAGT
66 TGATGTCTGCGTCCAACCACTTAATAATCTCCTTCTTCACTACTTCTTTCATTTTTTCATTCAGT
*
24581936 CTTCGTTGTTGCTTAATGGACTGTTTCCCTTTATCTTCCATCCTAATCTTATGCATGCAGAAAGA
131 CTTCGTTGTTGCTTAATGGACTGTTTCCCTTCATCTTCCATCCTAATCTTATGCATGCAGAAAGA
* *
24582001 GCAACTAATGCCTCTAATGTCTGCTATGCTCCAGGCAATGACTCTTTTATGTTGCTTTAGTATTT
196 ACAACTAATGCCTCTAATGTCTGCTATGCTCCAGGCAATAACTCTTTTATGTTGCTTTAGTATTT
*
24582066 CTATTAATTTTTCTTCTTGGCATGCGTCGAGACTTGCGCTGACAATTACAGGCAATGTTTCATTG
261 CGATTAATTTTTCTTCTTGGCATGCGTCGAGACTTGCGCTGACAATTACAGGCAATGTTTCATTG
24582131 TCACCAAGGAAAACATGTCACCTAGGAAACCATACTTCAGGTGCATCGACAATGGCTTTAACTCT
326 TCACCAAGGAAAACATGTCACCTAGGAAACCATACTTCAGGTGCATCGACAATGGCTTTAACTCT
24582196 AGAGTCAGAAATTTTTTAATC
391 AGAGTCAGAAATTTTTTAATC
24582217 GATG
1 GATG
24582221 GTTTAAACAT
Statistics
Matches: 401, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
411 401 1.00
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.35
Consensus pattern (411 bp):
GATGCCACTCTTCTTACGCACATATTGGACCGGGCTCACCCATGTGCTGTCCGAAATGGGATAGA
TGATGTCTGCGTCCAACCACTTAATAATCTCCTTCTTCACTACTTCTTTCATTTTTTCATTCAGT
CTTCGTTGTTGCTTAATGGACTGTTTCCCTTCATCTTCCATCCTAATCTTATGCATGCAGAAAGA
ACAACTAATGCCTCTAATGTCTGCTATGCTCCAGGCAATAACTCTTTTATGTTGCTTTAGTATTT
CGATTAATTTTTCTTCTTGGCATGCGTCGAGACTTGCGCTGACAATTACAGGCAATGTTTCATTG
TCACCAAGGAAAACATGTCACCTAGGAAACCATACTTCAGGTGCATCGACAATGGCTTTAACTCT
AGAGTCAGAAATTTTTTAATC
Found at i:24583067 original size:16 final size:16
Alignment explanation
Indices: 24583046--24583076 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24583036 ATAATGTTAA
24583046 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
24583062 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
24583077 GGATCCACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:24583883 original size:26 final size:26
Alignment explanation
Indices: 24583854--24583911 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
24583844 AATTCTGGGC
*
24583854 ACAATTCTGGACACATTCATGCAGCG
1 ACAATTCTGGAAACATTCATGCAGCG
* **
24583880 ACAATTCTGTAAATGTTCATGCAGCG
1 ACAATTCTGGAAACATTCATGCAGCG
24583906 A-AATTC
1 ACAATTC
24583912 CTAGGTGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 5 0.18
26 23 0.82
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (26 bp):
ACAATTCTGGAAACATTCATGCAGCG
Found at i:24584071 original size:37 final size:37
Alignment explanation
Indices: 24584000--24584096 Score: 133
Period size: 37 Copynumber: 2.6 Consensus size: 37
24583990 GCATTCTGTA
*
24584000 ATGTGACGACAGTTTT-GGTGCAATCTGGAAGTGCTC
1 ATGTGACGACAGTTTTGGGTGCAATCTAGAAGTGCTC
* * *
24584036 ATGTGGCGACAGTTTTGGGTGCAATTTAGAGGTGCTC
1 ATGTGACGACAGTTTTGGGTGCAATCTAGAAGTGCTC
* *
24584073 ATGCGACGACAGTTTTGGGAGCAA
1 ATGTGACGACAGTTTTGGGTGCAA
24584097 ATTTGGATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
36 15 0.28
37 38 0.72
ACGTcount: A:0.23, C:0.15, G:0.33, T:0.29
Consensus pattern (37 bp):
ATGTGACGACAGTTTTGGGTGCAATCTAGAAGTGCTC
Found at i:24586793 original size:24 final size:24
Alignment explanation
Indices: 24586766--24586811 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
24586756 ATACAAGTTA
*
24586766 AGAA-GTAAATCTGTCAGCGCAATC
1 AGAATGTAAAT-TGTCAGAGCAATC
*
24586790 AGAATGTTAATTGTCAGAGCAA
1 AGAATGTAAATTGTCAGAGCAA
24586812 ATTATAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (24 bp):
AGAATGTAAATTGTCAGAGCAATC
Found at i:24590506 original size:30 final size:30
Alignment explanation
Indices: 24590463--24590560 Score: 124
Period size: 30 Copynumber: 3.3 Consensus size: 30
24590453 CCTTCATTCA
* *
24590463 TGCTCGCAACTCCAGTGTTTGTAACATCAG
1 TGCTCGCAACTCCAGTGTTCGCAACATCAG
* * * *
24590493 TGTTCGCAGCTCCAGTGTTCGCAATATGAG
1 TGCTCGCAACTCCAGTGTTCGCAACATCAG
* *
24590523 TGCTCGCAACTCCAGTGTTCACAACATGAG
1 TGCTCGCAACTCCAGTGTTCGCAACATCAG
24590553 TGCTCGCA
1 TGCTCGCA
24590561 TCTTCCAAGC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (30 bp):
TGCTCGCAACTCCAGTGTTCGCAACATCAG
Found at i:24590539 original size:15 final size:15
Alignment explanation
Indices: 24590466--24590547 Score: 69
Period size: 15 Copynumber: 5.5 Consensus size: 15
24590456 TCATTCATGC
24590466 TCGCAACTCCAGTGT
1 TCGCAACTCCAGTGT
* *
24590481 TTGTAACAT-CAGTGT
1 TCGCAAC-TCCAGTGT
*
24590496 TCGCAGCTCCAGTGT
1 TCGCAACTCCAGTGT
** *
24590511 TCGCAA-TATGAGTGC
1 TCGCAACT-CCAGTGT
24590526 TCGCAACTCCAGTGT
1 TCGCAACTCCAGTGT
*
24590541 TCACAAC
1 TCGCAAC
24590548 ATGAGTGCTC
Statistics
Matches: 50, Mismatches: 13, Indels: 8
0.70 0.18 0.11
Matches are distributed among these distances:
14 2 0.04
15 46 0.92
16 2 0.04
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (15 bp):
TCGCAACTCCAGTGT
Found at i:24590575 original size:60 final size:60
Alignment explanation
Indices: 24590463--24590575 Score: 138
Period size: 60 Copynumber: 1.9 Consensus size: 60
24590453 CCTTCATTCA
*** * * *
24590463 TGCTCGCAACTCCAGTGTTTGTAACATCAGTGTTCGCAGCTCCAGTGTTCGCAATATGAG
1 TGCTCGCAACTCCAGTGTTCACAACATCAGTGCTCGCAGCTCCAGAGCTCGCAATATGAG
* *
24590523 TGCTCGCAACTCCAGTGTTCACAACATGAGTGCTCGCATCTTCCA-AGCTCGCA
1 TGCTCGCAACTCCAGTGTTCACAACATCAGTGCTCGCAGC-TCCAGAGCTCGCA
24590576 TGGTCCATGC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
60 40 0.91
61 4 0.09
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (60 bp):
TGCTCGCAACTCCAGTGTTCACAACATCAGTGCTCGCAGCTCCAGAGCTCGCAATATGAG
Found at i:24598516 original size:16 final size:17
Alignment explanation
Indices: 24598483--24598516 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
24598473 ATGAGTTAGA
*
24598483 ATAATGTTTAGATATTT
1 ATAATGGTTAGATATTT
24598500 ATAATGGTTAG-TATTT
1 ATAATGGTTAGATATTT
24598516 A
1 A
24598517 GGGTTTTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (17 bp):
ATAATGGTTAGATATTT
Found at i:24605068 original size:21 final size:20
Alignment explanation
Indices: 24605039--24605084 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
24605029 CTGCATAAAC
24605039 TAAAAAGGAAACAAATGAAAA-
1 TAAAAAGGAAA-AAAT-AAAAG
*
24605060 TAAAGAGGAAAAAATAAAAG
1 TAAAAAGGAAAAAATAAAAG
24605080 TAAAA
1 TAAAA
24605085 TTGCAATGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 4 0.18
20 8 0.36
21 10 0.45
ACGTcount: A:0.72, C:0.02, G:0.15, T:0.11
Consensus pattern (20 bp):
TAAAAAGGAAAAAATAAAAG
Found at i:24612086 original size:30 final size:30
Alignment explanation
Indices: 24612052--24612128 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 30
24612042 AAGATGCGAG
24612052 CACTGGTATTGCGAGCACTCATGTAACGAA
1 CACTGGTATTGCGAGCACTCATGTAACGAA
* * * * *
24612082 CACTGG-AGCTGCGAACACTGATGTTACGGA
1 CACTGGTA-TTGCGAGCACTCATGTAACGAA
* *
24612112 CACTCGTATTGTGAGCA
1 CACTGGTATTGCGAGCA
24612129 TGGATGAAGG
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
29 1 0.03
30 34 0.94
31 1 0.03
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (30 bp):
CACTGGTATTGCGAGCACTCATGTAACGAA
Found at i:24613762 original size:216 final size:215
Alignment explanation
Indices: 24613320--24616005 Score: 2708
Period size: 216 Copynumber: 12.5 Consensus size: 215
24613310 GCTCACATCA
** * ** ** *
24613320 TTTGGTCTTTGAATTAAAAACTTATTTATTTGAGAATTATTTCTCTCTTTCTTCTTAAATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * **
24613385 TTCTAACTTTTC-AAATATTAAGAGTTTTTTTATAACTTCTGTTCCTGGAAGTATTCAAGACGAT
66 TCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* ** * ** * *
24613449 CCATTCCTTTGACCAATTTCTCAAACATTCCATGCTCGGGAAATTGCATCATTTGCTCTAAATAG
131 CCATTCCTTCGAGAAATTT-TCGAACATTCCATGCTCCAGAAATCGCATCATTTGGTCTAAATAG
*
24613514 TTTGTCATTCTG-AAATCAACT
195 TTTGTCATTTTGTAAA-CAACT
** * * * * *
24613535 TTTTCTCTTTGAATTACAAAA-TTATTTACGTCAGAATCGTTACCCTCTT-ATTCTTGGACGAAC
1 TTTGGTCTTTGAATTA-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * ** * *
24613598 TTCCGAACTAGTCAAAATTGTACGAGTTCTTTTATAACAACGGTTCCTTAAAGTTTTTCACA-AT
65 TTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG-TATTCA-AGAC
* * * * * *
24613662 GATCAATTCTTTCGAGGAAATTTTCGAACATTCAATGCTCCAGATATCACATCATTTGGTGTAAA
128 GATCCATTCCTTCGA-GAAATTTTCGAACATTCCATGCTCCAGAAATCGCATCATTTGGTCTAAA
*
24613727 TAATTTGTCATTTTGTAAACAACT
192 TAGTTTGTCATTTTGTAAACAACT
* * * *
24613751 TTTGGTCTTTGAATTAAAAGCTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTAGCCGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
24613816 T-CGAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTACTTAAAGTACTCAAGACAA
66 TCCG-AACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * * * *
24613880 TCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTCAAGAAATCGCACCATTTGGTCTAAATA
130 TCCATTCCTTCGAGAAAT-TTTCGAACATTCCATGCTCCAGAAATCGCATCATTTGGTCTAAATA
* *
24613945 GTTTGTCATTTTGTAAATAATT
194 GTTTGTCATTTTGTAAACAACT
* * ** ** * * * *
24613967 TTTTGTCTTTAAATTAAAAACAAATTTATATGAGAATTTTTTGTCTATTGGTTTTTGGACGAACA
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-
* * *
24614032 TT-CGAACTTGTCAAACA-TTTAAGGGTTCTTTTATAACTTTGGTTCC-TAAGAGTATTCAAGAC
65 TTCCGAACTTGTCAAA-ATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGAC
* * * * * *
24614094 GATCCATTCCTTCAACCAACTTTAT-GAACATTCCATGCT-TAGGAAATCTCACCATTTGGTCTA
128 GATCCATTCCTTCGA-GAAATTT-TCGAACATTCCATGCTCCA-GAAATCGCATCATTTGGTCTA
*
24614157 AATAGTTTGTCTTTTTGTAAACAACT
190 AATAGTTTGTCATTTTGTAAACAACT
* * *
24614183 TTTAGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGATGAA-T
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
*
24614247 TACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
66 T-CCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * ** *
24614312 TCCATTCCTTCGAGAAATTTTCTGGACATTCCAAGCTCGGGAAATCACATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCCAGAAATCGCATCATTTGGTCTAAATA
*
24614377 GTTTGTCATTTTGTAAACAAAT
194 GTTTGTCATTTTGTAAACAACT
* * * * *
24614399 TTTGGTCTTTGAATTAAAAACTTATATACATGAGAATTGTTTCTCTCTTGCTTTTTGGCCGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
24614464 TCCGCACTTGT-AAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTGAAGACGA
66 TCCGAACTTGTCAAAA-TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * * *** *
24614528 TCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTTGGGAAATCGCACCATTTGGTCTAAATA
130 TCCATTCCTTCGAGAAAT-TTTCGAACATTCCATGCTCCAGAAATCGCATCATTTGGTCTAAATA
* *
24614593 GTTTGTCATTTTATAAATAACT
194 GTTTGTCATTTTGTAAACAACT
* * ** * * * ** * *
24614615 TTTTGTCTTTAAATTAAAAACAAATTTACATGAGAATT-TTTGTCTATCAGTTCTTGGACAAACA
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* *
24614679 TCCGAACTTGTCAAACA-TTTAAGAGTTCTTTTATAACTTCAGTTCC-TAAGAGTATTCAAGACG
66 TCCGAACTTGTCAAA-ATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGACG
* * * *
24614742 ATCCATTCCTTCGACCAACTTTACGAACATTCCATGCT-CAGGAAATCGCACCATTTGGTCTAAA
129 ATCCATTCCTTCGA-GAAATTTTCGAACATTCCATGCTCCA-GAAATCGCATCATTTGGTCTAAA
24614806 TAGTTTGTCATTTTGTAAACAACT
192 TAGTTTGTCATTTTGTAAACAACT
* * * * *
24614830 TTTGGTCTTTGAATT-AAAACTTATTTACATAAGAATTGTTTCTCTGTTGGTTCTTGAATGAA-T
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * ** *
24614893 TACCGAACTTGTCAAACTTTTACAAGTTCTTTTGCAACTTCAGTTCCTTAAAGTATTCAAGACGA
66 T-CCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* *
24614958 TCCATTCCTTCGAGAAATTTTCCGAACATTCCAAGCT-CAAAAATCGCATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGAAATTTT-CGAACATTCCATGCTCCAGAAATCGCATCATTTGGTCTAAATA
24615022 GTTTGTCATTTTGTAAACAACT
194 GTTTGTCATTTTGTAAACAACT
* * * * *
24615044 TTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTGTTTCTCTCTTGCTTCATGG-CTAAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAAC
* * * * * * **
24615108 TTTCGAACTTGTCAAATTTTTACGAGTTGTTTTATAACTTTGGTCCCTTAAAGTACTCAAGAATA
65 TTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* ** * *
24615173 TCCATTCCTTCGAGTAATTTTTTTAAACATTCCATGCT-CGGAATATCGCACCATTTGGTCTAAA
130 TCCATTCCTTCGAG-AA-ATTTTCGAACATTCCATGCTCCAGAA-ATCGCATCATTTGGTCTAAA
*
24615237 TAGTTTGTCATTTTGTACACAACT
192 TAGTTTGTCATTTTGTAAACAACT
* * * * * *
24615261 ATTGGTCTTT-AACTTAAAAACTAATTTACGTGATAAGTTTTTTGTCTCTTGGTTCTTGGATGAA
1 TTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAA-TTGTTTCTCTCTTGGTTCTTGGACGAA
** * * * *
24615325 CTTCTAAACTTGTCAAACA-TTTAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGAT
64 CTTCCGAACTTGTCAAA-ATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* ** * * *
24615389 GATCAATTCCTTCGACCAATTTTACAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTCAC
128 GATCCATTCCTTCGAGAAATTTT-CGAACATTCCATGCTCCAGAAATCGCATCATTTGGTCT-AA
* *
24615454 TTA-TTTGTCAATTTGTAATA-AACT
191 ATAGTTTGTCATTTTGTAA-ACAACT
* * * * *
24615478 TTTTGTCTTTGAATCAAAAAC--ATTTTCGTGAGAATTGTTTCTCTGTTGATTCTTGGTA-GAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAAC
*** * * * * * * *
24615540 TTTTAAACTTGTTATACTTTTATGAGTTCTTATATAACTTTGGTTCCTTAAATTATTCAAGACGA
65 TTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* ** *
24615605 TCCATTCCTTCGAGAAATTTTTCGAACATTCCAAGCTCGGGAAATCACATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGAAA-TTTTCGAACATTCCATGCTCCAGAAATCGCATCATTTGGTCTAAATA
24615670 GTTTGTCATTTTGTAAACAACT
194 GTTTGTCATTTTGTAAACAACT
*
24615692 TTTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGG-CTGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAAC
* * * * * * * * * * * *
24615756 TT-----CTTGTTATACTTTTATGAGTTATTTTAAAAATTAGGTTTCGTAAAGTATTCCAGATGA
65 TTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * ** * * *
24615816 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCT-TGGGAATTGCATCATTTAGTCTAAATA
130 TCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCCAGAAATCGCATCATTTGGTCTAAATA
*
24615880 GTTTGTCATTTTGTAAATAACT
194 GTTTGTCATTTTGTAAACAACT
* * * * * * * * *
24615902 TTTGGCCTTTAAATTAAAAACTTATTCACGTGAAAATTTTTTCTTTGTAGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
24615967 TCCAAACTTGTCAAAAATTCAAGAGTTATTTTATAACTT
66 TCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTT
24616006 TTTCCAAACA
Statistics
Matches: 2054, Mismatches: 349, Indels: 136
0.81 0.14 0.05
Matches are distributed among these distances:
210 103 0.05
211 76 0.04
213 4 0.00
214 270 0.13
215 481 0.23
216 811 0.39
217 216 0.11
218 93 0.05
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (215 bp):
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
CCATTCCTTCGAGAAATTTTCGAACATTCCATGCTCCAGAAATCGCATCATTTGGTCTAAATAGT
TTGTCATTTTGTAAACAACT
Found at i:24614650 original size:648 final size:646
Alignment explanation
Indices: 24613320--24616006 Score: 3274
Period size: 648 Copynumber: 4.2 Consensus size: 646
24613310 GCTCACATCA
* ** ** * * * ** ** *
24613320 TTTGGTCTTTGAATTAAAAACTTATTTATTTGAGAATTATTTCTCTCTTTCTTCTTAAATGAACT
1 TTTGGTCTTTAAATTAAAAACAAATTTACATGAGAATTTTTTGTCTATTGGTTCTTGGACGAAC-
* * * * *
24613385 TTCTAACTTTTCAAATA-TTAAGAGTTTTTTTATAACTTCT-GTTCCT-GGAAGTATTCAAGACG
65 TTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTT-TGGTTCCTAAG-AGTATTCAAGACG
* * * * * *
24613447 ATCCATTCCTTTGACCAA-TTTCTCAAACATTCCATGCTCGGGAAATTGCATCATTTGCTCTAAA
128 ATCCATTCCTTCGACCAACTTT-ACAAACATTCCATGCTCAGGAAATCGCACCATTTGGTCTAAA
* * * * *
24613511 TAGTTTGTCATTCTG-AAATCAACTTTTTCTCTTTGAATTACAAAA-TTATTTACGTCAGAATCG
192 TAGTTTGTCATTTTGTAAA-CAACTTTTTGTCTTTGAATTA-AAAACTTATTTACGTGAAAATTG
* * * * * * **
24613574 TTACCCTCTT-ATTCTTGGACGAACTTCCGAACTAGTCAAAATTGTACGAGTTCTTTTATAACAA
255 TTTCTCTCTTGATTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * *
24613638 CGGTTCCTTAAAGTTTTTCACA-ATGATCAATTCTTTCGAGGAAATTTTC-GAACATT-CAATGC
320 CGGTTCCTTAAAG-TATTCA-AGACGATCCATTCCTTCGA-GAAATTTTCTGAACATTCCAA-GC
* * * *
24613700 TCCAGATATCACATCATTTGGTGTAAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
381 TCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * *
24613765 TAAAAGCTTATTTA-AGTGAGAATTGTTTCTCTCTTGGTTCTTAGCCGAACTTCGAAACTTGTCA
446 TAAAAACTTATTTACA-TGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTCG-AACTTGTCA
* *
24613829 AACTTTTACGAGTTCTTTTATAACTTCGGTTACTTAAAGTACTCAAGACAATCCATTCCTTCGAG
509 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCATTCCTTCGAG
***
24613894 CAATATTCCAAACATTCCATGCTCAAGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGT
574 CAATATTCCAAACATTCCATGCTTGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGT
*
24613959 AAATAATT
639 AAATAACT
* * *
24613967 TTTTGTCTTTAAATTAAAAACAAATTTATATGAGAATTTTTTGTCTATTGGTTTTTGGACGAACA
1 TTTGGTCTTTAAATTAAAAACAAATTTACATGAGAATTTTTTGTCTATTGGTTCTTGGACGAAC-
* *
24614032 TTCGAACTTGTCAAACATTTAAGGGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGAT
65 TTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGAT
* ** * *
24614097 CCATTCCTTCAACCAACTTTATGAACATTCCATGCTTAGGAAATCTCACCATTTGGTCTAAATAG
130 CCATTCCTTCGACCAACTTTACAAACATTCCATGCTCAGGAAATCGCACCATTTGGTCTAAATAG
* *
24614162 TTTGTCTTTTTGTAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCT
195 TTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCT
*
24614227 CTCTTGGTTCTTGGATGAA-TTACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
260 CTCTTGATTCTTGGATGAACTT-CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* *
24614291 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGGACATTCCAAGCTCGGGAAA
324 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAAGCTCGAGAAA
*
24614356 TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACT
389 TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * *
24614421 TATATACATGAGAATTGTTTCTCTCTTGCTTTTTGGCCGAACTTCCGCACTTGTAAAACTTTTAC
454 TATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTT-CGAACTTGTCAAACTTTTAC
*
24614486 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTGAAGACGATCCATTCCTTCGAGCAATATTCC
518 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCATTCCTTCGAGCAATATTCC
*
24614551 AAACATTCCATGCTTGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTATAAATAACT
583 AAACATTCCATGCTTGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACT
* ** *
24614615 TTTTGTCTTTAAATTAAAAACAAATTTACATGAGAA-TTTTTGTCTATCAGTTCTTGGACAAACA
1 TTTGGTCTTTAAATTAAAAACAAATTTACATGAGAATTTTTTGTCTATTGGTTCTTGGACGAAC-
* * **
24614679 TCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCAGTTCCTAAGAGTATTCAAGACGAT
65 TTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGAT
*
24614744 CCATTCCTTCGACCAACTTTACGAACATTCCATGCTCAGGAAATCGCACCATTTGGTCTAAATAG
130 CCATTCCTTCGACCAACTTTACAAACATTCCATGCTCAGGAAATCGCACCATTTGGTCTAAATAG
* *
24614809 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAACTTATTTACAT-AAGAATTGTTTC
195 TTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAA-AATTGTTTC
* * * * ** *
24614872 TCTGTTGGTTCTTGAATGAA-TTACCGAACTTGTCAAACTTTTACAAGTTCTTTTGCAACTTCAG
259 TCTCTTGATTCTTGGATGAACTT-CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* *
24614936 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCAAGCTC-AAAA
323 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAAGCTCGAGAA
* *
24615000 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATC
388 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* ** *
24615065 TTATTTACATGAGAATTGTTTCTCTCTTGCTTCATGGCTAAACTTTCGAACTTGTCAAATTTTTA
453 TTATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAAC-TTCGAACTTGTCAAACTTTTA
* * * ** * *
24615130 CGAGTTGTTTTATAACTTTGGTCCCTTAAAGTACTCAAGAATATCCATTCCTTCGAGTAATTTTT
517 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCATTCCTTCGAGCAA-TATT
** * * *
24615195 TTAAACATTCCATGC-TCGGAATATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTACACAA
581 CCAAACATTCCATGCTTGGGAA-ATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAA
24615259 CT
645 CT
* * * * * * *
24615261 ATTGGTCTTTAACTTAAAAACTAATTTACGTGATAAGTTTTTTGTCTCTTGGTTCTTGGATGAAC
1 TTTGGTCTTTAAATTAAAAACAAATTTACATGAGAA-TTTTTTGTCTATTGGTTCTTGGACGAAC
* * *
24615326 TTCTAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGA
65 TTC-AAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGA
* * * **
24615391 TCAATTCCTTCGACCAATTTTACAAACATTCCATGCTC-GAGAAATCGCATCATTTGGTCTCACT
129 TCCATTCCTTCGACCAACTTTACAAACATTCCATGCTCAG-GAAATCGCACCATTTGGTCT-AAA
* * * *
24615455 TA-TTTGTCAATTTGTAATA-AACTTTTTGTCTTTGAATCAAAAAC--ATTTTCGTGAGAATTGT
192 TAGTTTGTCATTTTGTAA-ACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGT
* *** * * * *
24615516 TTCTCTGTTGATTCTTGG-TAGAACTTTTAAACTTGTTATACTTTTATGAGTTCTTATATAACTT
256 TTCTCTCTTGATTCTTGGAT-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* *
24615580 TGGTTCCTTAAATTATTCAAGACGATCCATTCCTTCGAGAAATTTT-TCGAACATTCCAAGCTCG
320 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCT-GAACATTCCAAGCTCG
*
24615644 GGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
384 AGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * * * *
24615709 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTT----CTTGTTATACTT
449 AAACTTATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTCGAACTTGTCAAACTT
* * * * * * * * * * *
24615770 TTATGAGTTATTTTAAAAATTAGGTTTCGTAAAGTATTCCAGATGATCCATTCCTTCGAGCAATT
514 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCATTCCTTCGAGCAATA
** * * * *
24615835 TTCTGAACATTCCATTCTTGGG-AATTGCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAATA
579 TTCCAAACATTCCATGCTTGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAATA
24615899 ACT
644 ACT
* ** * * * * * * * *
24615902 TTTGGCCTTTAAATTAAAAACTTATTCACGTGAAAATTTTTTCTTTGTAGGTTCTTGGATGAACT
1 TTTGGTCTTTAAATTAAAAACAAATTTACATGAGAATTTTTTGTCTATTGGTTCTTGGACGAACT
* * *
24615967 TCCAAACTTGTCAAAAATTCAAGAGTTATTTTATAACTTT
66 T-CAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTT
24616007 TTCCAAACAT
Statistics
Matches: 1792, Mismatches: 217, Indels: 69
0.86 0.10 0.03
Matches are distributed among these distances:
640 59 0.03
641 70 0.04
642 17 0.01
643 62 0.03
645 178 0.10
646 229 0.13
647 381 0.21
648 717 0.40
649 79 0.04
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (646 bp):
TTTGGTCTTTAAATTAAAAACAAATTTACATGAGAATTTTTTGTCTATTGGTTCTTGGACGAACT
TCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGATC
CATTCCTTCGACCAACTTTACAAACATTCCATGCTCAGGAAATCGCACCATTTGGTCTAAATAGT
TTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTC
TCTTGATTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
CTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAAGCTCGAGAAATC
ACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
TTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTCGAACTTGTCAAACTTTTACGAG
TTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCATTCCTTCGAGCAATATTCCAAA
CATTCCATGCTTGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACT
Found at i:24616638 original size:159 final size:159
Alignment explanation
Indices: 24616345--24616657 Score: 439
Period size: 159 Copynumber: 2.0 Consensus size: 159
24616335 TTGATAAACA
* * *
24616345 TTTACGAGTTCTTTTATAACTTCGATTCTTAAGAATGTTCAAGATGATCCATTCCTACAACCAAT
1 TTTACAAGTTCTTTTATAACTTCGATTCCTAAGAATATTCAAGATGATCCATTCCTACAACCAAT
* * * * *
24616410 TTTTTGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAAA
66 TTTCTAAACATTCCATGATCGGGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAAAA
24616475 AACTTTTGGTCTTTAAATTAAAAACATAT
131 AACTTTTGGTCTTTAAATTAAAAACATAT
* * * * * * *
24616504 TTTACAAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCATGATGATCCTTTCCTTCGACCAAT
1 TTTACAAGTTCTTTTATAACTTCGATTCCTAAGAATATTCAAGATGATCCATTCCTACAACCAAT
* *
24616569 TTTCTAAACATTCCATGATCGGGAAATCACATTA-TTGAGTCTAAATAGTTTTTAATTTTGTAAA
66 TTTCTAAACATTCCATGATCGGGAAATCACATCATTTG-GTCTAAATAGTTTGTAATTTTGTAAA
* *
24616633 CAACTTTTGTTCTTTAAATTAAAAA
130 AAACTTTTGGTCTTTAAATTAAAAA
24616658 TTGATTCACT
Statistics
Matches: 134, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
158 3 0.02
159 131 0.98
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.41
Consensus pattern (159 bp):
TTTACAAGTTCTTTTATAACTTCGATTCCTAAGAATATTCAAGATGATCCATTCCTACAACCAAT
TTTCTAAACATTCCATGATCGGGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAAAA
AACTTTTGGTCTTTAAATTAAAAACATAT
Found at i:24616638 original size:375 final size:369
Alignment explanation
Indices: 24616135--24616874 Score: 915
Period size: 375 Copynumber: 2.0 Consensus size: 369
24616125 TACTTTTATG
* * *
24616135 AGTTCTTTTATAACTTCTGTTCCTTAAATTATTCAGGACGATCCATTCCTTCGAGCAATTTACCG
1 AGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAGGACGATCCATTCCTTCGACCAATTTACCA
* *
24616200 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTT
66 AACATTCCATGATCGGGAAATCACATCATTTGGTCTAAATAATTTGTAATTTTGTAAACAACTTT
*
24616265 TGGTCTTTAAATTAAAAACTT-ATTTACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAACAT
131 TGGTCTTTAAATTAAAAA-TTGATTCACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAA-AT
* **
24616329 CCA-AACTTGAT-AAACATTTACGAGTTCTTTTATAACTTC-GATTCTTAAGAATGT-TCAA-GA
194 CCAGAACTAG-TCAAACATTTACGAGTTCTTTTATAACTTCAG-TTCCCAA-AA-GTATCAATGA
* * ** *
24616389 TGATCCATTCCTACAACCAATTTTTTGAACATTCCATGCTCGTGAAA-TCGCATCATTTGGTCTA
255 CGATCCATTCCTACAACAAATTTTCCGAACATTCCATGCTCG-AAAACT-GCATCATTT-G----
*
24616453 AATAGTTTGTAATTTTGTAAAAAACTTTTGGTCTTTAAATTAAAAACATATTTTACA
313 AATAGTTTGTAATTTTGTAAAAAACTTTTGGTCTCTAAATTAAAAACATATTTTACA
* * * *
24616510 AGTTCTTTTATAACTT-TGGTTCC-TAAGAGTATTCATGATGATCCTTTCCTTCGACCAATTTTC
1 AGTTCTTTTATAACTTCT-GTTCCTTAA-AGTATTCAGGACGATCCATTCCTTCGACCAATTTAC
* * * *
24616573 TAAACATTCCATGATCGGGAAATCACATTA-TTGAGTCTAAATAGTTTTTAATTTTGTAAACAAC
64 CAAACATTCCATGATCGGGAAATCACATCATTTG-GTCTAAATAATTTGTAATTTTGTAAACAAC
* * * * *
24616637 TTTTGTTCTTTAAATTAAAAATTGATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAT
128 TTTTGGTCTTTAAATTAAAAATTGATTCACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAAA
* * * * *
24616702 TTCAGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCCCAAAGTATTAATGGCGA
193 TCCAGAACTAGTCAAACATTTACGAGTTCTTTTATAACTTCAGTTCCCAAAAGTATCAATGACGA
** *
24616767 TCCATTCCTTTAAGAAATTTTCCGAACATTCCATGCTCGAAAACTGCATCATTTGAATAGTTTGT
258 TCCATTCCTACAACAAATTTTCCGAACATTCCATGCTCGAAAACTGCATCATTTGAATAGTTTGT
* * *
24616832 CATTTTGTAAAAAACTTTTGGTCTCTAAATTAAGAACTTATTT
323 AATTTTGTAAAAAACTTTTGGTCTCTAAATTAAAAACATATTT
24616875 ATGTGAAAAA
Statistics
Matches: 316, Mismatches: 39, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
369 49 0.16
373 3 0.01
374 30 0.09
375 233 0.74
376 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (369 bp):
AGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAGGACGATCCATTCCTTCGACCAATTTACCA
AACATTCCATGATCGGGAAATCACATCATTTGGTCTAAATAATTTGTAATTTTGTAAACAACTTT
TGGTCTTTAAATTAAAAATTGATTCACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAAATCC
AGAACTAGTCAAACATTTACGAGTTCTTTTATAACTTCAGTTCCCAAAAGTATCAATGACGATCC
ATTCCTACAACAAATTTTCCGAACATTCCATGCTCGAAAACTGCATCATTTGAATAGTTTGTAAT
TTTGTAAAAAACTTTTGGTCTCTAAATTAAAAACATATTTTACA
Found at i:24616893 original size:210 final size:211
Alignment explanation
Indices: 24616612--24617172 Score: 557
Period size: 210 Copynumber: 2.6 Consensus size: 211
24616602 ATTGAGTCTA
* * * * * *
24616612 AATAGTTTTTAATTTTGTAAACAACTTTTGTTCTTTAAATTAAAAATTGATTCACT-TGAGAATT
1 AATAG-TTTTCATTTTGTAAAAAACTTTTGCTCTTTAAATTAAAACTT-ATTTA-TGTGAAAATT
* *
24616676 GTTTCTCTCTTGGTTCTTGGATGAATTTCAGAACTAGTCAAACTTTTACGAGTTCTTTTATAACT
63 GTTTCTCTCTTGGTTCTTGGACGAATTTC-GAACTAGTCAAACTTTTAAGAGTTCTTTTATAACT
* * * *
24616741 TCAGTTCCCCAA-AGTATT-AATGGCGATCCATTCCTTTAAGAAATTTTCCGAACATTCCATGC-
127 TCAGTTCCCCAAGAGTATTCAA-GACGATCCATTCCTTCAACAAATTTTCCGAACATACCATGCT
*
24616803 TCGAAAACTGCATCATTT-G-
191 TAGAAAACTGCATCATTTGGT
* *
24616822 AATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTCTAAATTAAGAACTTATTTATGTGAAAAATT
1 AATAGTTT-TCATTTTGTAAAAAACTTTTGCTCTTTAAATTAA-AACTTATTTATGTG-AAAATT
* * * * * *
24616887 -TTTCTCTCTTGGTTTTTGAACAAACTTTCGAACTTGTCAAACATTTAAGATTTCTTTTATAACT
63 GTTTCTCTCTTGGTTCTTGGACGAA-TTTCGAACTAGTCAAACTTTTAAGAGTTCTTTTATAACT
* * * * * *
24616951 TCGGTT-CCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATACCATTCTT
127 TCAGTTCCCCAAGAGTATTCAAGACGATCCATTCCTTCAACAAATTTTCCGAACATACCATGCTT
* *
24617015 AGGAAATTGCATCATTTGGTCT
192 AGAAAACTGCATCATTTGG--T
* * * * * *
24617037 AAATAG-TTTCATTTTGTAATAAACTTTTGCTCTTTGAATTCACAACTTATTTACGTCATAATTG
1 -AATAGTTTTCATTTTGTAAAAAACTTTTGCTCTTTAAATT-AAAACTTATTTATGTGAAAATTG
* * * * *
24617101 TTTCTCTCTT-GTTCTTGGACGAACTTCTGAACTGGTCAAAATTTTAAGAGTTCTTTTACAACAT
64 TTTCTCTCTTGGTTCTTGGACGAATTTC-GAACTAGTCAAACTTTTAAGAGTTCTTTTATAACTT
*
24617165 CAATTCCC
128 CAGTTCCC
24617173 TAATTACGTG
Statistics
Matches: 286, Mismatches: 48, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
209 8 0.03
210 136 0.48
211 30 0.10
212 4 0.01
213 48 0.17
214 52 0.18
215 3 0.01
216 5 0.02
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (211 bp):
AATAGTTTTCATTTTGTAAAAAACTTTTGCTCTTTAAATTAAAACTTATTTATGTGAAAATTGTT
TCTCTCTTGGTTCTTGGACGAATTTCGAACTAGTCAAACTTTTAAGAGTTCTTTTATAACTTCAG
TTCCCCAAGAGTATTCAAGACGATCCATTCCTTCAACAAATTTTCCGAACATACCATGCTTAGAA
AACTGCATCATTTGGT
Found at i:24617561 original size:216 final size:215
Alignment explanation
Indices: 24617176--24618314 Score: 1120
Period size: 216 Copynumber: 5.4 Consensus size: 215
24617166 AATTCCCTAA
* * * *
24617176 TTACGTGAGACTTGTTTCTCTATTGGTTCTTGGACGAACTT-TCGAACTTGTCAAACTTTTAAGA
1 TTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCT-GAACTTGTCAAACATTTAA-A
* * * * * *
24617240 GTTCTTTTCTAACTTTGGTTCCTTGAAGTATTCAAGACGATCCATTTCTTCGAGAAATTTTTCAA
64 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAACCATTCCTTCGAGCAATTTTTCGA
* *
24617305 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCCTTTTGTAAACAACATTT
129 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
*
24617370 TGTCATTGAATTAAAAACTTAT
194 TGTCTTTGAATTAAAAACTTAT
* *
24617392 TTACATGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTCTGAACTTGTCAAACATTTACAAG
1 TTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCTGAACTTGTCAAACATTTA-AAG
*
24617457 TT-TTGTTATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGCAATTTTTCGA
65 TTCTT-TTATAACTTTGGTTCCTTAAAGTATTCAAGACGAACCATTCCTTCGAGCAATTTTTCGA
* * *
24617521 ACA-TCCAATGCTCAGGAAATCGCACCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
129 ACATTCC-ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * *
24617585 TGGTCTTTAAATTAAAAAGTTAT
193 TTGTCTTTGAATTAAAAACTTAT
* ** * * * * *
24617608 ATAAATGAGAATTATTTCTCTCTTACTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTTACGAG
1 TTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCTGAACTTGTCAAACATTTA-AAG
* * * * * *
24617673 TTCTTTTATAACTTCGGTTCCTTTAAGTACTCAAGACTATCCATTCCATCGAGCAATTTTTCGAA
65 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAACCATTCCTTCGAGCAATTTTTCGAA
* *
24617738 CATTTCATGCTC--G--A--G----A-------TAAATACTTTGTCATTTTGTAAACAACTTTTT
130 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTT
* *
24617786 GTCTTTAAATTAAAAACTAAT
195 GTCTTTGAATTAAAAACTTAT
* * * * *
24617807 ATACGTGAGAATTTTTTGTCTCTTGCTTCTTGGACTAACTT-TCGAACTTGTTAAACATTTAAGA
1 TTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCT-GAACTTGTCAAACATTTAA-A
* * * * * * * *
24617871 GTTCTTTTATGACTTTGATTCCTGAGAGTATTCAAGAC-AATCCATTCCTTTGACCAAATTTACG
64 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAA-CCATTCCTTCGAGCAATTTTTCG
* * * *
24617935 AGCATTCCATGCTCGGGAAATCTCATCATTCGGTCTAAATAGTTTGACATTTTGTAATA-AACTT
128 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAAC-T
24617999 TTTTGTCTTTGAATTAAAAAC--AT
191 TTTTGTCTTTGAATTAAAAACTTAT
* * * * ** * * *
24618022 TTTCGTCAGAATTGTTTCTCTCTCGGTTCTTGG-CAGAACTTCCAAACTTGAT-ATACTTTTATG
1 TTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGAC-GAACTTCTGAACTTG-TCAAACATTTA-A
* * * *
24618085 AGTTCTTTTAGAGA-TTTGGTTCCATAAAGTATTCAAGACGATA-AATTCTTTCGAGCAATTTAG
63 AGTTCTTTTATA-ACTTTGGTTCCTTAAAGTATTCAAGACGA-ACCATTCCTTCGAGCAATTT--
* * * *
24618148 TT--AACATTCCATTCTCGGGAAATTGTATCA-TTGGTCTAAATAGTTTGTCATTCTGTAAAC-A
124 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * *
24618209 CCTTTGGCCTTTGAATTAAAAACTTAT
189 CTTTTTGTCTTTGAATTAAAAACTTAT
* * * ** * *
24618236 TTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACAAACTTCAAAACTTGTAAAACATTTAGGAG
1 TTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCTGAACTTGTCAAACATTTA-AAG
24618301 TTCTTTTATAACTT
65 TTCTTTTATAACTT
24618315 CGATTCTAAT
Statistics
Matches: 768, Mismatches: 112, Indels: 88
0.79 0.12 0.09
Matches are distributed among these distances:
198 2 0.00
199 161 0.21
201 1 0.00
203 1 0.00
206 1 0.00
209 1 0.00
210 1 0.00
212 20 0.03
213 5 0.01
214 93 0.12
215 119 0.15
216 333 0.43
217 30 0.04
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (215 bp):
TTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCTGAACTTGTCAAACATTTAAAGT
TCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAACCATTCCTTCGAGCAATTTTTCGAAC
ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTG
TCTTTGAATTAAAAACTTAT
Found at i:24617908 original size:199 final size:199
Alignment explanation
Indices: 24617555--24617918 Score: 516
Period size: 199 Copynumber: 1.8 Consensus size: 199
24617545 CCATTTAGTC
* * *
24617555 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATATAAATGAGAAT
1 TAAATACTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTAATATAAATGAGAAT
* * *
24617620 TATTTCTCTCTTACTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
66 TATTTCTCTCTTACTTCTTGGACGAACTTCTGAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
* * *
24617685 TTCGGTTCCTTTAAGTACTCAAGACTATCCATTCCATCGAGCAATTTTTCGAACATTTCATGCTC
131 TTCGATTCCTTGAAGTACTCAAGACAATCCATTCCATCGAGCAATTTTTCGAACATTTCATGCTC
24617750 GAGA
196 GAGA
* **
24617754 TAAATACTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACTAATATACGTGAGAAT
1 TAAATACTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTAATATAAATGAGAAT
* * * * * *
24617819 TTTTTGTCTCTTGCTTCTTGGACTAACTT-TCGAACTTGTTAAACATTTAAGAGTTCTTTTATGA
66 TATTTCTCTCTTACTTCTTGGACGAACTTCT-GAACTTGTCAAACATTTAAGAGTTCTTTTATAA
* *
24617883 CTTTGATTCC-TGAGAGTATTCAAGACAATCCATTCC
130 CTTCGATTCCTTGA-AGTACTCAAGACAATCCATTCC
24617919 TTTGACCAAA
Statistics
Matches: 143, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
198 3 0.02
199 140 0.98
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (199 bp):
TAAATACTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTAATATAAATGAGAAT
TATTTCTCTCTTACTTCTTGGACGAACTTCTGAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
TTCGATTCCTTGAAGTACTCAAGACAATCCATTCCATCGAGCAATTTTTCGAACATTTCATGCTC
GAGA
Found at i:24618285 original size:214 final size:212
Alignment explanation
Indices: 24617754--24618309 Score: 599
Period size: 215 Copynumber: 2.6 Consensus size: 212
24617744 ATGCTCGAGA
* * *
24617754 TAAATACTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACTAATATACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAAC-ACTTTTTGTCTTTGAATTAAAAACT-ATTTACGTGAGAAT
* * * * * * *
24617819 TTTTTGTCTCTTGCTTCTTGGACTAACTTTCGAACTTGTTAAACATTTAAGAGTTCTTTTATGAC
64 TGTTTCTCTCTAGGTTCTTGGACAAAC-TTCAAACTTG-TAAACATTTAAGAGTTCTTTTATGAA
* ** *
24617884 TTTGATTCCTGAGAGTATTCAAGACAATCCATTCCTTTGACCAAATTTACGAGCATTCCATGCTC
127 TTTGATTCCTGAAAGTATTCAAGACAATAAATTCCTTTGACCAAATTTACGAACATTCCATGCTC
24617949 GGGAAATCTCATCATTCGGTC
192 GGGAAATCTCATCATTCGGTC
* * * *
24617970 TAAATAGTTTGACATTTTGTAATAAACTTTTTTGTCTTTGAATTAAAAAC-ATTTTCGTCAGAAT
1 TAAATAGTTTGTCATTTTGTAA-ACAC-TTTTTGTCTTTGAATTAAAAACTATTTACGTGAGAAT
* * * *
24618034 TGTTTCTCTCTCGGTTCTTGG-CAGAACTTCCAAACTTGATATACTTTTATGAGTTCTTTTA-GA
64 TGTTTCTCTCTAGGTTCTTGGACA-AACTT-CAAACTTG-TAAACATTTAAGAGTTCTTTTATGA
* * *
24618097 GATTTGGTTCCAT-AAAGTATTCAAGACGATAAATT-CTTTCGAGC-AATTTA-GTTAACATTCC
126 -ATTTGATTCC-TGAAAGTATTCAAGACAATAAATTCCTTT-GACCAAATTTACG--AACATTCC
* *
24618158 ATTCTCGGGAAAT-TGTATCATT-GGTC
186 ATGCTCGGGAAATCT-CATCATTCGGTC
* * * *
24618184 TAAATAGTTTGTCATTCTGTAAACACCTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATT
1 TAAATAGTTTGTCATTTTGTAAACACTTTTTGTCTTTGAATTAAAAAC-TATTTACGTGAGAATT
*
24618249 GTTTCTCTCTAGGTTCTTGGACAAACTTCAAAACTTGTAAAACATTTAGGAGTTCTTTTAT
65 GTTTCTCTCTAGGTTCTTGGACAAACTTC-AAACTTGT-AAACATTTAAGAGTTCTTTTAT
24618310 AACTTCGATT
Statistics
Matches: 285, Mismatches: 39, Indels: 33
0.80 0.11 0.09
Matches are distributed among these distances:
212 19 0.07
213 6 0.02
214 102 0.36
215 113 0.40
216 23 0.08
217 22 0.08
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (212 bp):
TAAATAGTTTGTCATTTTGTAAACACTTTTTGTCTTTGAATTAAAAACTATTTACGTGAGAATTG
TTTCTCTCTAGGTTCTTGGACAAACTTCAAACTTGTAAACATTTAAGAGTTCTTTTATGAATTTG
ATTCCTGAAAGTATTCAAGACAATAAATTCCTTTGACCAAATTTACGAACATTCCATGCTCGGGA
AATCTCATCATTCGGTC
Found at i:24618841 original size:216 final size:215
Alignment explanation
Indices: 24618326--24621990 Score: 3471
Period size: 216 Copynumber: 17.1 Consensus size: 215
24618316 GATTCTAATA
* * ** *
24618326 AACTTTTTATCTTTGAATTAAAAAC--ATTTTTGTGACAATTGTTTCTCTCTTGGTTCTTGGTA-
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-AC
* * * * * * * * * *
24618388 GAACTTTCGAAATTGTTATAC-TTGCATGAGTTCTTTTATATCTTCGGTTCCTTAAAGTATTCAA
65 GAACTTCCGAACTTGTCAAACATT-TAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAA
* * * * * * * * * * *
24618452 GATGGTTCATTCCTTCAAGCAATTTTCCAAACATTCCATGATCAAGAAAACGCATCATTTGATCT
129 GACGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCT
*
24618517 AAATAGTTTGTCA-TTTATAAAC
193 AAATAGTTTGTCATTTTGTAAAC
* * * * *
24618539 AACTTTTTGTCTTTAAATTAAAAACTAATTTATGTGAGATTTTTTTGTCTCTAT-TTTCTTGGAC
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGAC
* *
24618603 GAACTTCTGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTTGATTCCTGAGAGTATTCAAG
65 GAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAG
* * *
24618668 ACAATCCATTCCTTCGACCAATTTTACGAAGATTCCATGCTCAGGAAATCGCATCATTCGGTCTA
130 ACGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCTA
*
24618733 AATAGCTTGTCATTTTGTAAAC
194 AATAGTTTGTCATTTTGTAAAC
* *
24618755 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTTTTTGTCTCTTGGTTCTTGGACG
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * * * *
24618820 AGCTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTTGGTTCTTGAGAATATTCAAGA
66 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGA
* * * * * **
24618885 TGATCCATTCCTTTGACAAATTTTACAAACATTCCATGCTTGAGAAATCGCATCATTCAGTCTAA
131 CGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTCG-GAAATCGCATCATTTGGTCTAA
24618950 ATAGTTTGTCATTTTGTAATA-
195 ATAGTTTGTCATTTTGTAA-AC
* * *
24618971 AACTTTTTGTCTTTGAATTAAAAAC-AATTT-CGTCAGAATTG-TT-TCTCTTGGATCTTGGTA-
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-AC
* * * * * * * * *
24619031 GAACTTCCAAACTTGTTATACTTTTATGAGTTCTTTTAGAAATTCAATTCC-GTAAAGTATTCAA
65 GAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTG-AGAGTATTCAA
* * * *
24619095 GACGATTCATT-CTTCGAGCAATTTT-CAGAACATTCCATTCTCAGGAAATTGCATCATTTGGTC
129 GACGATCCATTCCTTCGACCAATTTTAC-GAACATTCCATGCTC-GGAAATCGCATCATTTGGTC
*
24619158 TAAATAGTTTATCATTTTGTAAAC
192 TAAATAGTTTGTCATTTTGTAAAC
* * * * * * *
24619182 AACTTTTGGCCTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTAGATTCTTGGACG
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * * *
24619247 AACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTGCTTAAAGTATTCAAGA
66 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGA
** * * * *
24619312 CGATCCATTCCTTC-ACCAATTTGCCAAACATTCCATGCTCGAGATATCACATCATTTGGT-TTA
131 CGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTCG-GAAATCGCATCATTTGGTCTAA
** *
24619375 ATAGTTCATCATTTTCTAATA-
195 ATAGTTTGTCATTTTGTAA-AC
* * * *
24619396 AACTTTTTATCTTTGAATTAAAAAC--ATTTTCGTGAAAATTGTTTCTCTCTTGGTTCTTGG-CA
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-
* * * * * * *
24619458 GAACTCCCGAAATTGTTATAC-TTTCATGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTATTCA
65 GAACTTCCGAACTTGTCAAACATTT-AAGAGTTCTTTTATAACTTCGA-TTCCTGAGAGTATTCA
* * **
24619521 AGACGATCCATTCCTTTGAGCAA-TTTATCGAACATTCCATGCTCGGGAAATTACATCATTTGGT
128 AGACGATCCATTCCTTCGACCAATTTTA-CGAACATTCCATGCTC-GGAAATCGCATCATTTGGT
24619585 CTAAATAGTTTGTCATTTTGTAAAC
191 CTAAATAGTTTGTCATTTTGTAAAC
* * * * *
24619610 AATTTTTTTTCTTTAAAGTAAAAACTTATTTACGTGAGAATTGTTTTCACTCTTGGTTCTTGGAC
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGAC
* * * *
24619675 GAACATCCGAACTTGTCAAACA-TTAACGAGTTCTTTTATAACTTCAATTCTTGAGAGTGTTCAA
65 GAACTTCCGAACTTGTCAAACATTTAA-GAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAA
* * **
24619739 GATGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCTGGAAATCATATCATTTGGTCT
129 GACGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCT
*
24619804 AAATAGTTTGT-AGTTTTTTAAAC
193 AAATAGTTTGTCA-TTTTGTAAAC
* * * * * * *
24619827 AACTTTTGGTCTTTAAATTAAAAAGTTATTTACGTGACAATAGTTTCTCTCTTAGTTCTTCGACG
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * * * * * *
24619892 AATTTCTGAATTTGTTAAACATTTACGAGTTCCTTTATAACTTCGATTACTAAGAGTATTCAAGA
66 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGA
* *
24619957 CGATCCATTCCTTCAACCAATTTT-CTGAACATTCCATGCTCGAGAAATTGCATCA-TTGAGTCT
131 CGATCCATTCCTTCGACCAATTTTAC-GAACATTCCATGCTCG-GAAATCGCATCATTTG-GTCT
* *
24620020 AAATAGTTTTTAATTTTGTTAAA-
193 AAATAGTTTGTCATTTTG-TAAAC
* * * ** * *
24620043 AACATTTGGTCATGGAATTAAAAACTAATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * * ** * * * *
24620108 AATTTCAGAACTGGTAAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AA-A
66 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGA
* * * * * * * * * * *
24620171 -GGT-GA-ACCTCCGAGCAATTTTTCGAATATTCCATGCTCGAGAAATTGAATCATTTGGTTTTA
131 CGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTCG-GAAATCGCATCATTTGGTCTAA
* *
24620233 ATAGTTTTTCATTTTGTAAAA
195 ATAGTTTGTCATTTTGTAAAC
* * * * * *
24620254 AACTTTTGGTCTTTGAATTAAAAACTAATTTATGTGAGAATTGTTTC-CAACTTGGTTTTTGAAC
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTC-TCTTGGTTCTTGGAC
* * * * * *
24620318 GAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTCATAACTTCGGTTCCTGAGATTATTTAAT
65 GAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAG
* * * **
24620383 AAGATCCATTCCTTCGACCAATTTTTCGAACATTCCATTCTCGGGAAATTACATCATTTGGTCTA
130 ACGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCTA
24620448 AATAGTTTGTCATTTTGTAAAC
194 AATAGTTTGTCATTTTGTAAAC
** * * * *
24620470 AACTTTTT-TCTTTAACGTAAAAACTTATTTACGTGAGAATTGTTTTCACTCGTGGTTCTTGGAT
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGAC
* * * * *
24620534 GAACATCCGAACTTGTCAAACA-TTAACGTGTTCTTTTATAACTTCAATTCTTGAGAGTGTTCAA
65 GAACTTCCGAACTTGTCAAACATTTAA-GAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAA
* * * ** *
24620598 GATGATCCATTCCTACGACCAATTTTTCGAACATTCCATGCTCGAGAAATCATATCATTCGGTCT
129 GACGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTCG-GAAATCGCATCATTTGGTCT
*
24620663 AAATAGTTTGTAATTTTGTAAAC
193 AAATAGTTTGTCATTTTGTAAAC
* * * * **
24620686 AAC-TTTTGATCTTTAAATTAAAAAGTTATTT-CTGTGAGAATAGATTCTCTCTTGGTTCTTCAA
1 AACTTTTTG-TCTTTAAATTAAAAACTAATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * * * * *
24620749 TGAACTTCCGAATTTGTTAAACATTTACGAGTTCTTTTATAAGTTCGATTACTAAGAGTATTCAA
64 CGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAA
*
24620814 GACGATCCATTCCGTCGACCAATTTT-CTGAACATTCCATGCTCGAGAAATCGCATCA-TTGAGT
129 GACGATCCATTCCTTCGACCAATTTTAC-GAACATTCCATGCTCG-GAAATCGCATCATTTG-GT
* * *
24620877 CTAAATAGTTTTTAATTTTGTAAAA
191 CTAAATAGTTTGTCATTTTGTAAAC
* * * ** * * * * *
24620902 AACTTTTGGCCATGGAATTAAAAACTGATTCACATGAAAATTGTTTCTCTCTTGGTTCTTGGATG
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* ** * * * * * * *
24620967 AATTTCAAAACCTGTAAAACATTTAGGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
66 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGA
* * * * * * * * *
24621032 TGATCCATTCCTTAGACTAATTTTCCAAACATTCCATGCTCGGAAAGTCACATTATTTGATTTAA
131 CGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGAAA-TCGCATCATTTGGTCTAA
** *
24621097 ATAGTTCATCATTTTCTAATA-
195 ATAGTTTGTCATTTTGTAA-AC
* * * *
24621118 AACTTTTTATCTTTGAATTAAAAAC--ATTTTCGTGACAATTGTTTCTCTCTTGGTTCTTGGTA-
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-AC
* * * * * *
24621180 GAACTTTCGAAATTGTTATAC-TTTCATGAGTTCTTTTATAACTTC-AGTTCCTGAAAGTATTCA
65 GAACTTCCGAACTTGTCAAACATTT-AAGAGTTCTTTTATAACTTCGA-TTCCTGAGAGTATTCA
* * *
24621243 AGACGATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTC
128 AGACGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTC-GGAAATCGCATCATTTGGTC
24621308 TAAATAGTTTGTCA-TTTGTAAAC
192 TAAATAGTTTGTCATTTTGTAAAC
* * * * *
24621331 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGCGATTTTTTTGTCT-TTGCTTCTTGGACG
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
*
24621395 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTAAGAGTATTCAAGA
66 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGA
* * * * * **
24621460 CAATCCATTCCTTTGACCAAATTTACAAAGATTCCATGCTCGGGAAATCGCATCATTCAGTCTAA
131 CGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCTAA
24621525 ATAGTTTGTCATTTTGTAAAC
195 ATAGTTTGTCATTTTGTAAAC
* * * *
24621546 AACTTTTTGTCTTTAAATTAAAAACTAATTTACATGAGAATTTTTTGTCTCCTGGTTCTTGGACG
1 AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * *
24621611 AGCTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAGGA
66 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGA
* * ** * *
24621676 TGATCCATTCCTTTGAAAAATTTTACGAGCATTCCATG---GGAAATCGCATCATTTAGTC-AAA
131 CGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGAAATCGCATCATTTGGTCTAAA
*
24621737 -A--TAGTCATTTTGTAATA-
196 TAGTTTGTCATTTTGTAA-AC
** * * *
24621754 AACTTTTTTTGTCTTTGACTTTTAATCAATTTCGTTAAATTT-CTCTTAGAATTGTTTCTCTCTT
1 AAC--TTTTTGTCTTT-A-AATTAA--AA--AC--T-AATTTAC-GTGAGAATTGTTTCTCTCTT
* * * * * * * * * *
24621818 CGTATCTT-GA-GAAC-TCCAAACTCGTTATACTTTTATGAGTTCTTTTAGAAATTCGGTTCC-G
54 GGT-TCTTGGACGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTG
* * * * * * *
24621879 TAAAGTA-TCAAGACGATTCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTTGGGAAATTGC
118 -AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTACGAACATTCCATGC-TCGGAAATCGC
* *
24621943 ATCATTTGGT-TTAATAGTTTATCATTTTGTAAAC
181 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* *
24621977 AAATTTTGGTCTTT
1 AACTTTTTGTCTTT
24621991 GATCGGTGCT
Statistics
Matches: 2867, Mismatches: 476, Indels: 210
0.81 0.13 0.06
Matches are distributed among these distances:
208 16 0.01
209 1 0.00
210 19 0.01
211 251 0.09
212 205 0.07
213 108 0.04
214 364 0.13
215 393 0.14
216 1155 0.40
217 272 0.09
218 10 0.00
219 24 0.01
220 23 0.01
221 11 0.00
222 1 0.00
223 14 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGA
CGATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGAAATCGCATCATTTGGTCTAAA
TAGTTTGTCATTTTGTAAAC
Found at i:24620601 original size:859 final size:859
Alignment explanation
Indices: 24618357--24621688 Score: 3924
Period size: 859 Copynumber: 3.9 Consensus size: 859
24618347 AAACATTTTT
* * * * * *
24618357 GTGACAATTGTTTCTCTCTTGGTTCTTGG-TAGAACTTTC-GAAATTGTTATAC-TTGCATGAGT
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAT-GAACTTTCAGAACTTGTAAAACATT-TAAGAGT
* * * *
24618419 TCTTTTATATCTTCGGTTCCTTAAAGTATTCAAGATGGTTCATTCCTTCAAGCAATTTTCCAAAC
64 TCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGATGATCCA-TCC-T-AAGCAATTTTCCAAAC
* * * * * ** * * *
24618484 ATTCCATGATCAAGAAAACGCATCATTTGATCTAAATAGTTTGTCA-TTTATAAACAACTTTTTG
126 ATTCCATGCTCGAGAAATCACATCATTTGATTTAAATAGTTCATCATTTTCTAAAAAACTTTTTA
* * * * * *
24618548 TCTTTAAATTAAAAACTAATTTAT-GTGAGATTTTTTTGTCTCTAT-TTTCTTGGACGAACTTCT
191 TCTTTGAATTAAAAAC--ATTT-TCGTGAGAATTGTTTCTCACT-TGGTTCTT-GACGAACTTC-
* * * *
24618611 GAACTTGTCAAACATTT-AAGAGTTCTTTTATAACTT-TGATTCCTGAGAGTATTCAAGACA-AT
250 CAAATTGTCAAAC-TTTCAAGAGTTCTTTTATAACTTCAG-TTCCTGAAAGTATTCAAGA-AGAT
* * * *
24618673 CCATTCCTTCGACCAATTTTACGAAGATTCCATGCTCAGGAAATCGCATCATTCGGTCTAAATAG
312 CCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAG
* * *
24618738 CTTGTCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATT-TTTTG
377 TTTGTCATTTTGTAAACAACTTTTTGTCTTTAAAGTAAAAACTAATTTACGTGAGAATTGTTTTC
* * * * ***
24618802 TCTCTTGGTTCTTGGACGAGCTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTTGGT
442 ACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCAAT
* * *
24618867 TCTTGAGAATATTCAAGATGATCCATTCCTTTGACAAATTTTACAAACATTCCATGCT-TGAGAA
507 TCTTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTACAAACATTCCATGCTCTGAGAA
* * *
24618931 ATCGCATCATTCAGTCTAAATAGTTTGTCATTTTGTAATA-AACTTTTTGTCTTTGAATTAAAAA
572 ATCACATCATTCAGTCTAAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTAAATTAAAAA
* * * * * * * *
24618995 -CAATTTCGTCAGAATTG-TT-TCTCTTGGATCTTGGTA-GAACTTCCAAACTTGTTATACTTTT
636 GTAATTTCGTGAGAATAGTTTCTCTCTTGGTTCTTCG-ACGAACTTCCGAACTTGTTAAACATTT
* * * * * * *
24619056 ATGAGTTCTTTTAGAAATTCAATTCCGTAA-AGTATTCAAGACGATTCATT-CTTCGAGCAATTT
700 ACGAGTTCTTTTATAACTTCGATTAC-TAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTT
* * * *
24619119 TCAGAACATTCCATTCTC-AGGAAATTGCATCATTTG-GTCTAAATAGTTTATCATTTTG-TAAA
764 TCTGAACATTCCATGCTCGA-GAAATTGCATCA-TTGAGTCTAAATAGTTTTTAATTTTGTTAAA
* * * * *
24619181 CAACTTTTGGCCTTTGAATTAAAAATTTATTTAC
827 -AACTTTTGGCCATGGAATTAAAAACTAATTCAC
* * * * *
24619215 GTGAGAATTGTTTCTCTCTAGATTCTTGGACGAACTTCCA-AACTTGTCAAACATTTAAGAGTTC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCAGAACTTGTAAAACATTTAAGAGTTC
* * * * * *
24619279 TTTTATAACTTCGGTTGCTTAAAGTATTCAAGACGATCCATTCCTTCACCAATTTGCCAAACATT
66 TTTTATAACTTCGGTTCCTTAAAGTATTAAAGATGATCCA-TCC-TAAGCAATTTTCCAAACATT
* * *
24619344 CCATGCTCGAGATATCACATCATTTGGTTT-AATAGTTCATCATTTTCTAATAAACTTTTTATCT
129 CCATGCTCGAGAAATCACATCATTTGATTTAAATAGTTCATCATTTTCTAAAAAACTTTTTATCT
* * * *
24619408 TTGAATTAAAAACATTTTCGTGAAAATTGTTTCTCTCTTGGTTCTTGGCAGAACTCCCGAAATTG
194 TTGAATTAAAAACATTTTCGTGAGAATTGTTTCTCACTTGGTTCTTGAC-GAACTTCC-AAATTG
* * * * * *
24619473 TTATACTTTCATGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT
257 TCAAACTTTCAAGAGTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGAAGATCCATTCCTTC
* * * *
24619538 GAGCAATTTATCGAACATTCCATGCTCGGGAAATTACATCATTTGGTCTAAATAGTTTGTCATTT
322 GACCAATTTTTCGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTT
* * *
24619603 TGTAAACAATTTTTTTTCTTTAAAGTAAAAACTTATTTACGTGAGAATTGTTTTCACTCTTGGTT
387 TGTAAACAACTTTTTGTCTTTAAAGTAAAAACTAATTTACGTGAGAATTGTTTTCACTCTTGGTT
24619668 CTTGGACGAACATCCGAACTTGTCAAACA-TTAACGAGTTCTTTTATAACTTCAATTCTTGAGAG
452 CTTGGACGAACATCCGAACTTGTCAAACATTTAA-GAGTTCTTTTATAACTTCAATTCTTGAGAG
* * * *
24619732 TGTTCAAGATGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCTG-GAAATCATATCA
516 TATTCAAGATGATCCATTCCTTCGACCAATTTTACAAACATTCCATGCTCTGAGAAATCACATCA
** * *
24619796 TTTGGTCTAAATAGTTTGT-AGTTTTTTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTTAC
581 TTCAGTCTAAATAGTTTGTCA-TTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTAATTT-C
* * * * * *
24619860 GTGACAATAGTTTCTCTCTTAGTTCTTCGACGAATTTCTGAATTTGTTAAACATTTACGAGTTCC
644 GTGAGAATAGTTTCTCTCTTGGTTCTTCGACGAACTTCCGAACTTGTTAAACATTTACGAGTTCT
*
24619925 TTTATAACTTCGATTACTAAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTTCTGAACATT
709 TTTATAACTTCGATTACTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATT
* *
24619990 CCATGCTCGAGAAATTGCATCATTGAGTCTAAATAGTTTTTAATTTTGTTAAAAACATTTGGTCA
774 CCATGCTCGAGAAATTGCATCATTGAGTCTAAATAGTTTTTAATTTTGTTAAAAACTTTTGGCCA
24620055 TGGAATTAAAAACTAATTCAC
839 TGGAATTAAAAACTAATTCAC
* ** *
24620076 GTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA-TTTCAGAACTGGTAAAATTTTTACGAGTTC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCAGAACTTGTAAAACATTTAAGAGTTC
* * * * * *
24620140 TTTTATAACTTCGGTTCCTTAAAGTATTAAAGGTGAACC-TCC-GAGCAATTTTTCGAATATTCC
66 TTTTATAACTTCGGTTCCTTAAAGTATTAAAGATGATCCATCCTAAGCAATTTTCCAAACATTCC
* * * ** * **
24620203 ATGCTCGAGAAATTGA-ATCATTTGGTTTTAATAGTTTTTCATTTTGTAAAAAACTTTTGGTCTT
131 ATGCTCGAGAAA-TCACATCATTTGATTTAAATAGTTCATCATTTTCTAAAAAACTTTTTATCTT
*
24620267 TGAATTAAAAACTAATTTAT-GTGAGAATTGTTTC-CAACTTGGTTTTTGAACGAACTTCCAAAC
195 TGAATTAAAAAC--ATTT-TCGTGAGAATTGTTTCTC-ACTTGGTTCTTG-ACGAACTTCCAAA-
* * * * * *
24620330 TTGTCAAACATTT-AAGAGTTCTTTCATAACTTCGGTTCCTGAGATTATTTAATAAGATCCATTC
254 TTGTCAAAC-TTTCAAGAGTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGAAGATCCATTC
* * *
24620394 CTTCGACCAATTTTTCGAACATTCCATTCTCGGGAAATTACATCATTTGGTCTAAATAGTTTGTC
318 CTTCGACCAATTTTTCGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTC
* * *
24620459 ATTTTGTAAACAACTTTTT-TCTTTAACGTAAAAACTTATTTACGTGAGAATTGTTTTCACTCGT
383 ATTTTGTAAACAACTTTTTGTCTTTAAAGTAAAAACTAATTTACGTGAGAATTGTTTTCACTCTT
* *
24620523 GGTTCTTGGATGAACATCCGAACTTGTCAAACA-TTAACGTGTTCTTTTATAACTTCAATTCTTG
448 GGTTCTTGGACGAACATCCGAACTTGTCAAACATTTAA-GAGTTCTTTTATAACTTCAATTCTTG
* * * * *
24620587 AGAGTGTTCAAGATGATCCATTCCTACGACCAATTTTTCGAACATTCCATGCTC-GAGAAATCAT
512 AGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTACAAACATTCCATGCTCTGAGAAATCAC
* * * *
24620651 ATCATTCGGTCTAAATAGTTTGTAATTTTGTAAACAACTTTTGATCTTTAAATTAAAAAGTTATT
577 ATCATTCAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTAATT
* * * *
24620716 TCTGTGAGAATAGATTCTCTCTTGGTTCTTCAATGAACTTCCGAATTTGTTAAACATTTACGAGT
642 TC-GTGAGAATAGTTTCTCTCTTGGTTCTTCGACGAACTTCCGAACTTGTTAAACATTTACGAGT
* *
24620781 TCTTTTATAAGTTCGATTACTAAGAGTATTCAAGACGATCCATTCCGTCGACCAATTTTCTGAAC
706 TCTTTTATAACTTCGATTACTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAAC
* *
24620846 ATTCCATGCTCGAGAAATCGCATCATTGAGTCTAAATAGTTTTTAATTTTGTAAAAAACTTTTGG
771 ATTCCATGCTCGAGAAATTGCATCATTGAGTCTAAATAGTTTTTAATTTTGTTAAAAACTTTTGG
*
24620911 CCATGGAATTAAAAACTGATTCAC
836 CCATGGAATTAAAAACTAATTCAC
* * * * *
24620935 ATGAAAATTGTTTCTCTCTTGGTTCTTGGATGAA-TTTCAAAACCTGTAAAACATTTAGGAGTTC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCAGAACTTGTAAAACATTTAAGAGTTC
* * *
24620999 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTAGACTAATTTTCCAAACAT
66 TTTTATAACTTCGGTTCCTTAAAGTATTAAAGATGATCCA-TCCTAAG-C-AATTTTCCAAACAT
* *
24621064 TCCATGCTCG-GAAAGTCACATTATTTGATTTAAATAGTTCATCATTTTCTAATAAACTTTTTAT
128 TCCATGCTCGAGAAA-TCACATCATTTGATTTAAATAGTTCATCATTTTCTAAAAAACTTTTTAT
* * *
24621128 CTTTGAATTAAAAACATTTTCGTGACAATTGTTTCTCTCTTGGTTCTTGGTA-GAACTTTCGAAA
192 CTTTGAATTAAAAACATTTTCGTGAGAATTGTTTCTCACTTGGTTCTT-G-ACGAAC-TTCCAAA
* * * *
24621192 TTGTTATACTTTCATGAGTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGACGATCCATTCC
254 TTGTCAAACTTTCAAGAGTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGAAGATCCATTCC
* * *
24621257 TTCAAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
319 TTCGACCAATTTTTCGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCA
* * * **
24621322 -TTTGTAAACAACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGCG-ATTTTTTTGTCT-TTG
384 TTTTGTAAACAACTTTTTGTCTTTAAAGTAAAAACTAATTTACGTGAGAATTGTTTTCACTCTTG
* * * * *
24621384 CTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTAAG
449 GTTCTTGGACGAACATCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCAATTCTTGAG
** * * * * *
24621449 AGTATTCAAGACAATCCATTCCTTTGACCAAATTTACAAAGATTCCATGCTC-GGGAAATCGCAT
514 AGTATTCAAGATGATCCATTCCTTCGACCAATTTTACAAACATTCCATGCTCTGAGAAATCACAT
* *
24621513 CATTCAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACTAATTTA
579 CATTCAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTAATTT-
* ** * * * * * *
24621578 CATGAGAATTTTTTGTCTCCTGGTTCTTGGACGAGCTTCCGAACTTGTCAAACATTTAAGAGTTC
643 CGTGAGAATAGTTTCTCTCTTGGTTCTTCGACGAACTTCCGAACTTGTTAAACATTTACGAGTTC
* * * * *
24621643 TTTTATAACTTCGGTTCCTGAGAGTATTCAGGATGATCCATTCCTT
708 TTTTATAACTTCGATTACTAAGAGTATTCAAGACGATCCATTCCTT
24621689 TGAAAAATTT
Statistics
Matches: 2130, Mismatches: 291, Indels: 104
0.84 0.12 0.04
Matches are distributed among these distances:
854 7 0.00
855 192 0.09
856 176 0.08
857 112 0.05
858 143 0.07
859 533 0.25
860 495 0.23
861 212 0.10
862 172 0.08
863 16 0.01
864 72 0.03
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (859 bp):
GTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCAGAACTTGTAAAACATTTAAGAGTTC
TTTTATAACTTCGGTTCCTTAAAGTATTAAAGATGATCCATCCTAAGCAATTTTCCAAACATTCC
ATGCTCGAGAAATCACATCATTTGATTTAAATAGTTCATCATTTTCTAAAAAACTTTTTATCTTT
GAATTAAAAACATTTTCGTGAGAATTGTTTCTCACTTGGTTCTTGACGAACTTCCAAATTGTCAA
ACTTTCAAGAGTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGAAGATCCATTCCTTCGACC
AATTTTTCGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
AACAACTTTTTGTCTTTAAAGTAAAAACTAATTTACGTGAGAATTGTTTTCACTCTTGGTTCTTG
GACGAACATCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCAATTCTTGAGAGTATTC
AAGATGATCCATTCCTTCGACCAATTTTACAAACATTCCATGCTCTGAGAAATCACATCATTCAG
TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTAATTTCGTGAGAA
TAGTTTCTCTCTTGGTTCTTCGACGAACTTCCGAACTTGTTAAACATTTACGAGTTCTTTTATAA
CTTCGATTACTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATTCCATGCT
CGAGAAATTGCATCATTGAGTCTAAATAGTTTTTAATTTTGTTAAAAACTTTTGGCCATGGAATT
AAAAACTAATTCAC
Found at i:24634187 original size:216 final size:214
Alignment explanation
Indices: 24633409--24634309 Score: 1026
Period size: 216 Copynumber: 4.2 Consensus size: 214
24633399 TCAACCTCTG
* *
24633409 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * *
24633474 CAAACATTTAAGAGTTCTATTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
66 CAAACATTTATGAGTTCTTTTATAACTTCAGTT-CTTAAAGTATTCAAGACGATCCATTCCTTCG
** * * ** *
24633539 ACCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTTTAAATAGTTCATCATTTT
130 ACCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTT
* * ** *
24633604 CTAATAAACTTTTTATCTTTG
195 GTAA-AAAATTTTGGTCTTTA
* * * * *
24633625 AATTAAAAGC--ATTTTCGTGACAATTGTTTCTCTCTTGGTTCTTGGTA-GAACTCCCGAAATTG
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAACTTCCGAACTTG
* * * * *
24633687 TTATAC-TTTCATGAGTTCTTTTATAACTTTAGTTTCTTAAAGTATTCAAGATGACCCATTCCTT
65 TCAAACATTT-ATGAGTTCTTTTATAACTTCAG-TTCTTAAAGTATTCAAGACGATCCATTCCTT
* * * * * *
24633751 CGAGCAATTTTTTGAACATTCCCTGCTCAGGAAATTACATCATTTGGTCTCAATAGTTTGTTATT
128 CGACCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTAATT
* * *
24633816 TTGTAAACAACTTGTT-TTCTCTA
193 TTGTAAA-AAATT-TTGGTCTTTA
* * * * *
24633839 CAGTAAAAACTTATTTAAGTGAGAATTGTTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTG
1 AATTAAAAACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTG
* * * * * *
24633904 TCAAACATTAACGAGTTCTTTTATAACTTCAATTCTTGAGAGTGTTCAAGATGATCCATTCCTTC
65 TCAAACATTTATGAGTTCTTTTATAACTTCAGTTCTT-AAAGTATTCAAGACGATCCATTCCTTC
* *
24633969 GACCAATTTTCTGAACATTCCATGCTCAGGAAATCATATCATTCGGTCTAAATAGTTTGTAATTT
129 GACCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTAATTT
24634034 TGTAAACAAATTTTGGTCTTTA
194 TGTAAA-AAATTTTGGTCTTTA
* * * * * * *
24634056 AATTGAAAAGTTATTTTCGTGAGAATAGATTCTCTCTTGGTTCTTCGACGAACTTCCGAATTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* *
24634121 TAAACATTTATGAGTTCTTTTATAACTTCGGTTAC-TAAGAGTATTCAAGACGATCCATTCCTTC
66 CAAACATTTATGAGTTCTTTTATAACTTCAGTT-CTTAA-AGTATTCAAGACGATCCATTCCTTC
* *
24634185 GACCAATTTTCTGAACATTCCATGCTC-GAGAAATCGCATCA-TTGAGTCTAAATAGTTTTTAAT
129 GACCAATTTTCTGAACATTCCATGCTCAG-GAAATCACATCATTTG-GTCTAAATAGTTTGTAAT
* **
24634248 TTTGTAAAAAACTTTTGGTCATGG
192 TTTGTAAAAAA-TTTTGGTCTTTA
* *
24634272 AATTAAAAACTAATTCACGTGAGAATTGTTTCTCTCTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
24634310 CTCCAAGAAA
Statistics
Matches: 573, Mismatches: 95, Indels: 34
0.82 0.14 0.05
Matches are distributed among these distances:
213 4 0.01
214 167 0.29
215 12 0.02
216 216 0.38
217 172 0.30
218 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (214 bp):
AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
CAAACATTTATGAGTTCTTTTATAACTTCAGTTCTTAAAGTATTCAAGACGATCCATTCCTTCGA
CCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTG
TAAAAAATTTTGGTCTTTA
Found at i:24634281 original size:433 final size:430
Alignment explanation
Indices: 24633408--24634302 Score: 1128
Period size: 433 Copynumber: 2.1 Consensus size: 430
24633398 ATCAACCTCT
* *
24633408 GAATTAAAAACTTATTTACGTGAGAATTG-TTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTT
1 GAATTAAAAACTTATTTACGTGAGAATTGTTTTCACTCTAGGTTCTTGGACGAACATCCAAACTT
**
24633472 GTCAAACATTTAAGAGTTCTATTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
66 GTCAAACATTTAAGAGTTCTATTATAACTTCAATTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * *
24633537 CGACCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTTTAAATAGTTCATCATT
131 CGACCAATTTTCCAAACATTCCATGCTCAGGAAATCACATCATTCGGTCTAAATAGTTCATAATT
* * * * *
24633602 TTCTAATAAACTTTTTATCTTTGAATTAAAAGCATTTTCGTGACAATTGTTTCTCTCTTGGTTCT
196 TTCTAATAAAATTTTGATCTTTAAATTAAAAGCATTTTCGTGACAATAGATTCTCTCTTGGTTCT
* * * *
24633667 TGGTAGAACTCCCGAAATTGTTATACTTTCATGAGTTCTTTTATAACTTTAGTTTCTTAAAGTAT
261 TCGTAGAACTCCCGAAATTGTTAAACTTTCATGAGTTCTTTTATAACTTCAGTTACTTAAAGTAT
* * * * *
24633732 TCAAGATGACCCATTCCTTCGAGCAATTTTTTGAACATTCCCTGCTCAGGAAATTACATCATTTG
326 TCAAGACGACCCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTG
* * *
24633797 GTCTCAATAGTTTGTTATTTTGTAAACAACTTGTTTTCTC
391 GTCTAAATAGTTTGTTATTTTGTAAAAAACTTGTTGTCTC
* * * * *
24633837 TACAGTAAAAACTTATTTAAGTGAGAATTGTTTTCACTCTTGGTTCTTGGACGAACATCCGAACT
1 GA-ATTAAAAACTTATTTACGTGAGAATTGTTTTCACTCTAGGTTCTTGGACGAACATCCAAACT
* * * *
24633902 TGTCAAACA-TTAACGAGTTCTTTTATAACTTCAATT-CTTGAGAGTGTTCAAGATGATCCATTC
65 TGTCAAACATTTAA-GAGTTCTATTATAACTTCAATTCCTT-AAAGTATTCAAGACGATCCATTC
** * **
24633965 CTTCGACCAATTTTCTGAACATTCCATGCTCAGGAAATCATATCATTCGGTCTAAATAGTTTGTA
128 CTTCGACCAATTTTCCAAACATTCCATGCTCAGGAAATCACATCATTCGGTCTAAATAGTTCATA
* * * *
24634030 ATTTTGTAA-ACAAATTTTGGTCTTTAAATTGAAAAGTTATTTTCGTGAGAATAGATTCTCTCTT
193 ATTTTCTAATA-AAATTTTGATCTTTAAATT-AAAAG-CATTTTCGTGACAATAGATTCTCTCTT
* * *
24634094 GGTTCTTCG-ACGAACTTCCGAATTTGTTAAACATTT-ATGAGTTCTTTTATAACTTCGGTTAC-
255 GGTTCTTCGTA-GAACTCCCGAAATTGTTAAAC-TTTCATGAGTTCTTTTATAACTTCAGTTACT
*
24634156 TAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATTCCATGCTC-GAGAAATC
318 TAA-AGTATTCAAGACGACCCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCAG-GAAATC
* *
24634220 GCATCA-TTGAGTCTAAATAGTTT-TTAATTTTGTAAAAAACTT-TTGGTCATG
381 ACATCATTTG-GTCTAAATAGTTTGTT-ATTTTGTAAAAAACTTGTT-GTC-TC
* *
24634271 GAATTAAAAACTAATTCACGTGAGAATTGTTT
1 GAATTAAAAACTTATTTACGTGAGAATTGTTT
24634303 CTCTCTTCTC
Statistics
Matches: 397, Mismatches: 54, Indels: 26
0.83 0.11 0.05
Matches are distributed among these distances:
429 1 0.00
430 33 0.08
431 157 0.40
432 17 0.04
433 184 0.46
434 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (430 bp):
GAATTAAAAACTTATTTACGTGAGAATTGTTTTCACTCTAGGTTCTTGGACGAACATCCAAACTT
GTCAAACATTTAAGAGTTCTATTATAACTTCAATTCCTTAAAGTATTCAAGACGATCCATTCCTT
CGACCAATTTTCCAAACATTCCATGCTCAGGAAATCACATCATTCGGTCTAAATAGTTCATAATT
TTCTAATAAAATTTTGATCTTTAAATTAAAAGCATTTTCGTGACAATAGATTCTCTCTTGGTTCT
TCGTAGAACTCCCGAAATTGTTAAACTTTCATGAGTTCTTTTATAACTTCAGTTACTTAAAGTAT
TCAAGACGACCCATTCCTTCGACCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTG
GTCTAAATAGTTTGTTATTTTGTAAAAAACTTGTTGTCTC
Found at i:24634423 original size:129 final size:129
Alignment explanation
Indices: 24634189--24634434 Score: 350
Period size: 129 Copynumber: 1.9 Consensus size: 129
24634179 TCCTTCGACC
* *
24634189 AATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTGAGTCTAAATAGTTTTTAATTTTGTA
1 AATTTTCTGAACATTCCATGCTCGAGAAATCGAATCATTGAGTCTAAATAGTTTGTAATTTTGTA
24634254 AAAAACTTTTGGTCATGGAATTAAAAACTAATTCACGTGAGAATTGTTTCTCTCTTCTCCAAGA
66 AAAAACTTTTGGTCATGGAATTAAAAACTAATTCACGTGAGAATTGTTTCTCTCTTCTCCAAGA
* * * * * * *
24634318 AATTTTTTGAATATTCCATGCTCGGGAAATTGAATCATTTG-GTTTTAATAGTTTGTCATTTTGT
1 AATTTTCTGAACATTCCATGCTCGAGAAATCGAATCA-TTGAGTCTAAATAGTTTGTAATTTTGT
* * * * *
24634382 AAAAAACTTTTGGTCTTTGAATTCAAAACTAATTTATGTGAGAATTGTTTCTC
65 AAAAAACTTTTGGTCATGGAATTAAAAACTAATTCACGTGAGAATTGTTTCTC
24634435 GCCTGGTTTT
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
129 99 0.97
130 3 0.03
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (129 bp):
AATTTTCTGAACATTCCATGCTCGAGAAATCGAATCATTGAGTCTAAATAGTTTGTAATTTTGTA
AAAAACTTTTGGTCATGGAATTAAAAACTAATTCACGTGAGAATTGTTTCTCTCTTCTCCAAGA
Found at i:24634790 original size:195 final size:192
Alignment explanation
Indices: 24634408--24634799 Score: 518
Period size: 194 Copynumber: 2.0 Consensus size: 192
24634398 TTGAATTCAA
* * * * *
24634408 AACTAATTTATGTGAGAATTGTTTCTCGCCTGGTTTTGAACGAACTTCCAAACTTGTCAAATATT
1 AACTTATTTACGTGAGAATTGTTTCTCACCTGGTTTTGAACGAACATCCAAACTTGTCAAACATT
** * * *
24634473 TAAGAGTTCTTTCATAACTTCGGTTCCTGAGAATATTTAAGACGATCCATTCCTTCGACCAATTT
66 TAAGAGTTCTTTCATAACTTCCATTCCTGAGAATAGTCAAGACGATCCATTCCTACGACCAATTT
* * *
24634538 TTGAACATTCCATTCTCGGGAAATTACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
131 TTGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAAAC
* * * *
24634600 AACTTATTTACGTGAGAATTGTTT-TCACTCTTGGTTCTTGGATGAACATCCGAACTTGTTAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCAC-C-TGGTT-TTGAACGAACATCCAAACTTGTCAAAC
* * * * *
24634664 A-TTAACGAGTTCTTTTATAACTTCCATTCTTGAGAGTGGTCAAGATGATCCATTCCTACGACCA
63 ATTTAA-GAGTTCTTTCATAACTTCCATTCCTGAGAATAGTCAAGACGATCCATTCCTACGACCA
*
24634728 ATTTTTCGAACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAGTTTGTAATTTTGTAA
127 ATTTTT-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAA
24634793 AC
191 AC
24634795 AACTT
1 AACTT
24634800 TTGGTCTTTA
Statistics
Matches: 172, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
191 3 0.02
192 23 0.13
193 9 0.05
194 76 0.44
195 61 0.35
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (192 bp):
AACTTATTTACGTGAGAATTGTTTCTCACCTGGTTTTGAACGAACATCCAAACTTGTCAAACATT
TAAGAGTTCTTTCATAACTTCCATTCCTGAGAATAGTCAAGACGATCCATTCCTACGACCAATTT
TTGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAAAC
Found at i:24635031 original size:215 final size:215
Alignment explanation
Indices: 24634595--24635535 Score: 899
Period size: 215 Copynumber: 4.4 Consensus size: 215
24634585 TGTCATTTTG
* * * * *
24634595 TAAACAACTTATTTACGTGAGAATTGTTTTCACTCTTGGTTCTTGGATGAACATCCGAACTTGTT
1 TAAA-AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTCGACGAAC-TTCGAACTTGTC
* ** ** * *
24634660 AAACATTAACGAGTTCTTTTATAACTTCCATTCTTGAGAGTGGTCAAGATGATCCATTCCTACGA
63 AAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCATTCCTTCGA
* *** *
24634725 CCAATTTTTCGAACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAGTTTGTAATTTTG
128 CCAATTTTTTGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTTATTTTG
*
24634790 TAAACAACTTTTGGTCTTTAAAT
193 TAAAAAACTTTTGGTCTTTAAAT
* * * * * * *
24634813 TAAAAAGTTATTTCCGTGAGAATAGATTCTCTCTTGGTTCTCCGACGAACTTCGAATTTGTTAAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACTTCGAACTTGTCAAA
* *
24634878 CATTTACAAGTTCTTTTATAACTTCGGTTAC-TAAGAGTATTCAAGACGATCCATTCCTTCGACC
66 CATTTACGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTATTCAAGACGATCCATTCCTTCGACC
* *
24634942 AATTTTTTGAACATTTCATGCTCGGGAAATCT-CATCATTTGGTCTAAATAGTTTTTTATTTTGT
130 AATTTTTTGAACATTCCATGCTCGGGAAAT-TGCATCATTTGGTCTAAATAGTTTGTTATTTTGT
* * **
24635006 AAAAAACTTTTAGTCATGGAAT
194 AAAAAACTTTTGGTCTTTAAAT
* * * * *
24635028 TAAAAACTAATTCACGTGAGAATTGTTTCT-T-ATGAATT-TT------A----GAACTTGTAAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTCGACGAACTTCGAACTTGTCAA
* * * *
24635080 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-ACAGTATTAAAGGCAGA-CC--T-C--CGA
65 ACATTTACGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTATTCAAGAC-GATCCATTCCTTCGA
* * ** * * * * *
24635138 GCAATTTTTTGAATATTCCATGCT-TAGAAATTGAATCATTCGGTTTTAATAGTTTGTCATTTTG
128 CCAATTTTTTGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTTATTTTG
* * *
24635202 TAAACAACTATTGATCTTTAAAT
193 TAAAAAACTTTTGGTCTTTAAAT
* * * * * *
24635225 TAAAAACTAATTTACGTGATATGTTTTTTGTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCA
1 TAAAAACTTATTTACGTGAGA-ATTGTTTCTCTCTTGGTTCTTCGACGAACTTC-GAACTTGTCA
* * * * *
24635290 AACATTTAAGAGTTCTTTCATAACTTTGATTCTTGAGAGTATTTAAGACGATCCATTCCTTCGAC
64 AACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCATTCCTTCGAC
* * * * *
24635355 CAATTTTTAGAACATTCCATTCTCGGGAAATTGCATCATTTGGCCTAAATAGTTTG-TAATTTAT
129 CAATTTTTTGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTTATTTTGT
* *
24635419 AATAAACTTTTGGTCTTTGAAT
194 AAAAAACTTTTGGTCTTTAAAT
* * * *
24635441 TAAAAACTTATTTACATCATAATTGTTTCTCTCTT-GTTCTTCGACGAACTTTCGAACTGGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAAC-TTCGAACTTGTCAA
*
24635505 A-ATTTTACGAGTTCTTTTATAACATCGGTTC
65 ACA-TTTACGAGTTCTTTTATAACTTCGGTTC
24635536 CCTAGTTACG
Statistics
Matches: 579, Mismatches: 113, Indels: 66
0.76 0.15 0.09
Matches are distributed among these distances:
196 1 0.00
197 65 0.11
198 30 0.05
199 3 0.01
200 5 0.01
201 1 0.00
203 51 0.09
204 3 0.01
206 1 0.00
207 1 0.00
210 5 0.01
211 48 0.08
213 5 0.01
214 51 0.09
215 178 0.31
216 84 0.15
217 43 0.07
218 4 0.01
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (215 bp):
TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACTTCGAACTTGTCAAA
CATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
ATTTTTTGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAA
AAAACTTTTGGTCTTTAAAT
Found at i:24635595 original size:90 final size:89
Alignment explanation
Indices: 24635461--24635626 Score: 217
Period size: 90 Copynumber: 1.9 Consensus size: 89
24635451 TTTACATCAT
* * * * *
24635461 AATTGTTTCTCTCTTGTTCTTCGACGAACTTTCGAACTGGTCAAA-ATTTTACGAGTTCTTTTAT
1 AATTATTTCACTCTTGTTCTTCGACAAACTTCCGAACTGCTCAAACA-TTTACGAGTTCTTTTAT
24635525 AACATCGGTTCCCTAGTTACGTGAC
65 AACATCGGTTCCCTAGTTACGTGAC
* * *
24635550 AATTATTTCACTCTTGGTTCTTGGACAAACTTCCGAACTTCTCAAACATTTACGAGTTCTTTTCT
1 AATTATTTCACTCTT-GTTCTTCGACAAACTTCCGAACTGCTCAAACATTTACGAGTTCTTTTAT
* *
24635615 AACTTTGGTTCC
65 AACATCGGTTCC
24635627 ATAAAGTATT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
89 13 0.20
90 51 0.78
91 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (89 bp):
AATTATTTCACTCTTGTTCTTCGACAAACTTCCGAACTGCTCAAACATTTACGAGTTCTTTTATA
ACATCGGTTCCCTAGTTACGTGAC
Found at i:24635926 original size:218 final size:218
Alignment explanation
Indices: 24635685--24636078 Score: 603
Period size: 218 Copynumber: 1.8 Consensus size: 218
24635675 CCACGATCGG
* * * *
24635685 GAAATCGCATCATTTGATCTAAATAGTTTTTCATTTTGTAAACAACATT-TGGTCTTTGAATTAA
1 GAAATCGCACCATTTCATCTAAATAGTTTGTCATTTTGTAAACAAC-TTCTGGGCTTTGAATTAA
* *
24635749 AAACTTATTT-ACATGAGAATTATTTCTCTCTTGCTTCCTGGCCGACCTTCCGAACTCGTCAAAC
65 AAACTTATTTGA-ATGAGAATTATTTCTCCCTTGCTTCCTGGCCGAACTTCCGAACTCGTCAAAC
* *
24635813 TTTTACCAATTCTTTCATAACTTCGATTCCTTAAAGTACTCAAGACTATATCCATTCCTTCGAGC
129 ATTCACCAATTCTTTCATAACTTCGATTCCTTAAAGTACTCAAGACTATATCCATTCCTTCGAGC
24635878 AATTTTCTGAACATTCCATGCTTCA
194 AATTTTCTGAACATTCCATGCTTCA
*
24635903 GAAATCGCACCATTTCATCTAAATAGTTTGTCATTTTGTAAACAGCTTCTGGGCTTTGAATTAAA
1 GAAATCGCACCATTTCATCTAAATAGTTTGTCATTTTGTAAACAACTTCTGGGCTTTGAATTAAA
* * * *
24635968 AACTTATTTGAATGAGAATTGTTTCTCCCTTGCTTCTTGGTCGAACTTCCGAACTTGTCAAACAT
66 AACTTATTTGAATGAGAATTATTTCTCCCTTGCTTCCTGGCCGAACTTCCGAACTCGTCAAACAT
* * * *
24636033 TCACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACTA
131 TCACCAATTCTTTCATAACTTCGATTCCTTAAAGTACTCAAGACTA
24636079 ACCAGTTAAA
Statistics
Matches: 157, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
217 2 0.01
218 154 0.98
219 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.38
Consensus pattern (218 bp):
GAAATCGCACCATTTCATCTAAATAGTTTGTCATTTTGTAAACAACTTCTGGGCTTTGAATTAAA
AACTTATTTGAATGAGAATTATTTCTCCCTTGCTTCCTGGCCGAACTTCCGAACTCGTCAAACAT
TCACCAATTCTTTCATAACTTCGATTCCTTAAAGTACTCAAGACTATATCCATTCCTTCGAGCAA
TTTTCTGAACATTCCATGCTTCA
Found at i:24636489 original size:213 final size:214
Alignment explanation
Indices: 24636086--24636712 Score: 601
Period size: 214 Copynumber: 2.9 Consensus size: 214
24636076 CTAACCAGTT
* * * ** * * *
24636086 AAACATTTATGAGTTCTTTTATAACTTCGGTTACTGAGAGTATTC-AAGACGATCCAT-CCTTCG
1 AAACATTTAAGGGTTCTTTAATAACTTCAATTCCTGAAAGTA-TCAAAGACGATCCATACCTCCG
* ** * * * *
24636149 ACCAATTTTCT-GAACATTCCATGCTCGAGAAATCGCATCA-TTGAATCTAAATAGTTTTTAATT
65 ACCAATTTT-TAGAACATTCCATGCTCGAAAAATTACATCATTTG-GTCTAAATA-TGTGTCATT
* * * *
24636212 TTGTACAAAACTTTTCGTCTTTGAATTAAAAACTGATTCATGTGAGAATTATTTCTCTCTTGGTT
127 TTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTAATT-ATTTGAGAATTATTTCTCTCTTGGTT
*
24636277 CTTGGATGA-ATTTCAGAACTTGTA
191 CTTGGACGACATTTCA-AACTTGTA
** * * * * ** *
24636301 AAAC-TTTTGGGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTAAAGGGGATCCATTCCTCCG
1 AAACATTTAAGG-GTTCTTTAATAACTTCAATTCCTGAAAGTATCAAAGACGATCCATACCTCCG
* ** * * * *
24636364 AGCAATTTTTTTAATATTCCATGCTCGGAAAATTACATCATTTGGTTTTAATA-GTGTCATTTTG
65 ACCAATTTTTAGAACATTCCATGCTCGAAAAATTACATCATTTGGTCTAAATATGTGTCATTTTG
* * *
24636428 TAAAAAACTTTTGGTCTTTGAATTAAAAACTAATCTATTTGAGAATTGTTTCTCACTTGGTTTTT
130 TAAAAAACTTTTGGTCTTTGAATTAAAAACTAAT-TATTTGAGAATTATTTCTCTCTTGGTTCTT
* * *
24636493 GAACGACCTTTCAAACTTGTC
194 GGACGACATTTCAAACTTGTA
* * *
24636514 AAACATTTAAGGGTTCTTTAATAACTTCAATTCCTGAGAGTATCCAAGACGATCCATACCTTCGA
1 AAACATTTAAGGGTTCTTTAATAACTTCAATTCCTGAAAGTATCAAAGACGATCCATACCTCCGA
* * *
24636579 CCAATTTTTAGAACATTCCATTCTCGAAAAATTGCATCATTTGGTCTAAATATTTTGTCATTTTG
66 CCAATTTTTAGAACATTCCATGCTCGAAAAATTACATCATTTGGTCTAAATA-TGTGTCATTTTG
* * * *
24636644 TAATAAACTTTTGGTTTTTTGAATT-AAAACTTATTTACGTT-AGAATTATTTCTCTCTT-GTTC
130 TAAAAAACTTTTGG-TCTTTGAATTAAAAAC-TAATTA-TTTGAGAATTATTTCTCTCTTGGTTC
24636706 TTGGACG
192 TTGGACG
24636713 TGCTTCTGAC
Statistics
Matches: 334, Mismatches: 64, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
213 95 0.28
214 106 0.32
215 71 0.21
216 48 0.14
217 14 0.04
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (214 bp):
AAACATTTAAGGGTTCTTTAATAACTTCAATTCCTGAAAGTATCAAAGACGATCCATACCTCCGA
CCAATTTTTAGAACATTCCATGCTCGAAAAATTACATCATTTGGTCTAAATATGTGTCATTTTGT
AAAAAACTTTTGGTCTTTGAATTAAAAACTAATTATTTGAGAATTATTTCTCTCTTGGTTCTTGG
ACGACATTTCAAACTTGTA
Found at i:24636838 original size:90 final size:89
Alignment explanation
Indices: 24636675--24636843 Score: 223
Period size: 90 Copynumber: 1.9 Consensus size: 89
24636665 AATTAAAACT
* ** *
24636675 TATTTACGTTAGAATTATTTCTCTCTTGTTCTTGGACGTGCTTCTGACCTGGTCAAAATTTTACG
1 TATTTACGTTAGAATTATTTCTCTCTTGTTCTTGAACGAACTTCTGAACTGGTCAAAATTTTACG
24636740 AGTTCTTTTATAACATCGGGTCCC
66 AGTTCTTTTATAACATCGGGTCCC
* * * *
24636764 TATTTACGTTAGAATTGTTTCTCTCTTGGTTTTTGAATGAACTTCTGAACTTGTCAAACA-TTTA
1 TATTTACGTTAGAATTATTTCTCTCTT-GTTCTTGAACGAACTTCTGAACTGGTCAAA-ATTTTA
* *
24636828 CTAGTTCTTTTCTAAC
64 CGAGTTCTTTTATAAC
24636844 TTTGGTTCCT
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
89 26 0.38
90 41 0.60
91 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.45
Consensus pattern (89 bp):
TATTTACGTTAGAATTATTTCTCTCTTGTTCTTGAACGAACTTCTGAACTGGTCAAAATTTTACG
AGTTCTTTTATAACATCGGGTCCC
Found at i:24637148 original size:216 final size:216
Alignment explanation
Indices: 24636764--24639856 Score: 2979
Period size: 216 Copynumber: 14.4 Consensus size: 216
24636754 ATCGGGTCCC
* * * * *
24636764 TATTTACGTTAGAATTGTTTCTCTCTTGGTTTTTGAATGAACTTCTGAACTTGTCAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
* * * ** * * * **
24636829 TAGTTCTTTTCTAACTTTGGTTCCTTAAAGTATT-AAGACAATCCATTTCGTCGAGAAATTTTTT
66 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCA
* * * * *
24636893 GAACATTCCATGCTCAGGAAATGGCATCATTTGGTCTAAACAGTTTTTCATTTTGTAAACAACGT
131 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
*
24636958 TTGGTCTTTAAATTAAAAACA
196 TTGGTCTTTAAATTAAAAACT
* * * *
24636979 TATTTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTA
1 TA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTA
* *
24637044 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATGCATTCCTTCGAGCAATTTTC
65 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC
* * * *
24637109 AGAACATTACAT-CTTGGGACATCGCATCATTTGGTCTAAATAGTTTGTCATTTTATAAACAACT
130 AGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* *
24637173 TTTTGTCTTTAAAGTAAAAACT
195 TTTGGTCTTTAAATTAAAAACT
* * * * *
24637195 TATTTACGTGAGAATTTGTTTCACTCTTGGTTCTTAGACGAACATCCGAACTTCTCAAAC-TTAA
1 TATTTACGTGAGAA-TTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTA
* * * * * ** *
24637259 TGAGTTCTTTTATAACTTTGATT-CTTGAGAGTGTTCAAGATGATCCATTCCAACGACCAATTTT
65 CGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTT
* * * * ****
24637323 TC-GAACATTCCATCCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGT-AAAAAGTAAACAA
128 TCAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * *
24637386 CATTTGGTCTTTAAATTAAATATT
193 CTTTTGGTCTTTAAATTAAAAACT
* * * *
24637410 TATTTCCATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
* * * * * * * *
24637475 GAGTTCTTTTCTAACTTTGGTTCCTTAAAGCATTCAAGATGATCCATTTCGTCGAGAAATTTACC
66 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCA
* * *
24637540 GAACATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACAT
131 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* *
24637605 TTGGTCTTTGACTTAAAAACT
196 TTGGTCTTTAAATTAAAAACT
* * * * ** ** * * * * *
24637626 TATTTACATCAAAATTGTCTCTCTCTTACTTCTTGTCCGAATTTCTGAGCTTGCCAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
* * * * * *
24637691 GTGTTCTTTTATAATTTCAGTTCCTTAAAGTACTCAAGACTATATCCATTCCTTTGAGCAATTTT
66 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-T-GATCCATTCCTTCGAGCAATTTT
* * * * * *
24637756 TAGAACATTCCATGCTTGGGAAATCGAAGCATTTGGTCTAAATAATTTATCATTTTGTAAACAAC
129 CAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* *
24637821 TTTTGGTCTTTGAATTAAAAAGT
194 TTTTGGTCTTTAAATTAAAAACT
** * * ** *
24637844 TATTTAAATGAGAATTGGTTCTCCCTTCCTTCTTGGCCGAACTTCCGAACTTGTCAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
* * * * *
24637909 GAGTTCTTTTATAATTTCGGTTCCTAAAAGTACTCAAGATGAACCATTCCTTTGAGCAATTTTTC
66 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTTC
* * *
24637974 -GGACATTCCATGCTCGAGAAATCGCACCATTTGGT-TAAAATAGTTTGTCATTTTGTAAACAAC
130 AGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAC
* *
24638037 TTTTGGTCGTTAAATTAAAAAGT
194 TTTTGGTCTTTAAATTAAAAACT
** * * * ** *
24638060 TATTTAAATGAGAATTGTTTCTCTATTGCTTCTT-TACCGAACTTTTGAACTTGTCAAACTTTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-CGAACTTCCGAACTTGTCAAACATTTA
* * *
24638124 CGAGTTCTTTTATAACTTCAGTTCCTTAAAGTACTCAAGATTATCCATTCCTTCGA-CAAATTTT
65 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGC-AATTTT
* * * *
24638188 CCA-AACATTCCATGC-CTGAGAAATCGCACCATTTGCTCTAAATAGTTTATCATTTTGTAAACA
129 -CAGAACATTCCATGCTC-GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* *
24638251 ACTTTTTGTCTTAAAATTAAAAACT
192 ACTTTTGGTCTTTAAATTAAAAACT
* * * * * * *
24638276 AATTTACGTGAGAATTTTTTGTCTCTTGCTTCTTGGACAAACTTCTGAACTTGTCAAACATTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
* * * * * * * *
24638341 GAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGCTTCATTCCTTCGACCAACTTT-A
66 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCA
* * * * * *
24638405 CGAACATCCCATGCTGGGGAAATCGCATCATTCGGGCTAAATAGTTTCTTATTTTGTAATA-AAC
131 -GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAAC
* *
24638469 TTTTTTGTCTTTGAATTAAAAAC-
194 -TTTTGGTCTTTAAATTAAAAACT
* * * * * *
24638492 -ATTTTCGCT-AGAATTATTTCTCTCTTGGTTCTTGGTA-GGACTTCCAAACTTGTTATAC-TTC
1 TATTTACG-TGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAACTTCCGAACTTGTCAAACATT-
* * * * * ** *
24638553 TATGAGTTCTTTTAGAAATTCGATTCCGTAAAGTATTCAAGAAAATCCATTCCTTTGAGCAATTT
63 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTT
* * * *
24638618 CTCA-AACATTCCATTCTCAGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATA
128 -TCAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
*
24638682 ACTTTTGG-CTTTTGAATTAAAAACT
192 ACTTTTGGTC-TTTAAATTAAAAACT
** * * * * * * *
24638707 TATTTACGTGAGAATTGTTTCTCTCAAGGTTCTTGAATGAAGTTGCAAACTTGGCAAACATTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
* * *
24638772 GAGTTATTTTATAACTTCGGTTCCTTAAATTATTCAAGATGATCCATT-CTATTGA-CAAATTTT
66 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCT-TCGAGC-AATTTT
* * * * *
24638835 CTA-AACACTCCATGCTCGGGAAATCACATCATTTGGTTTAAATAGTTCGTCATTTTCTAATA-A
129 C-AGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACA
* ** *
24638898 ATTTTTTATCTTTGAATTAAAAAC-
192 ACTTTTGGTCTTTAAATTAAAAACT
* * * * *
24638922 -ATTTTCGTGACAATTGTTTCTCTCTTGGTTCTTGG-CAGAACTTCCGAAGTTGTTATAC-TTTC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACATTT-
* * * *
24638984 ATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATAATTCATTCCTTCGAGCAATTTC
64 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT
* * *
24639049 CAGAACATTCTATGCTCGGGAAATTGCATCATTTTGTCTAAATAGTTAT-TCATTTTGTAAACAA
129 CAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAA
* * *
24639113 CTTTTTGTCTTTAAAGTAGAAACT
193 CTTTTGGTCTTTAAATTAAAAACT
* * * * *
24639137 TATTTACGTGCGAATTGTTTTCACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACATTAA
1 TATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTA
* * * * * * * *
24639202 TGAGTTCTTTTATAACTTCGATT-CTTGAGAGTGTTCAAAATGATCCATTTCTACGACCAATTTT
65 CGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT
* * * * * * *
24639266 CCGAACATCCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTTTTTAATTTTGTAAATA
129 CAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG--TTTGTCATTTTGTAAACA
* *
24639331 ACTTTTAGTCTTTAAATTAAAAATT
192 ACTTTTGGTCTTTAAATTAAAAACT
* * * * * *
24639356 TATTTCCGTGAGAATAGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTTTTAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
* *
24639421 GAGTTCTTTTATAACTTCGG-----T----TA--C--GA-G-----TTCCTCCAAGCAATTTTTC
66 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTTC
* * * *
24639467 -GAATATTCCATGCTCGGGAAATCGCATCATTTGGTTTTAATAGTTTGTCATTTTGTAAAAAACT
130 AGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* *
24639531 TTTGATCTTTGAATTAAAAACT
195 TTTGGTCTTTAAATTAAAAACT
* * * * * ** *
24639553 TATTT-CTTTGAGAATTGTTTCCCACTTGGTTTTTGAACGAACTTCTAAACTTGTCAGACATTTA
1 TATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTA
* * * * * *
24639617 AGAGTTCTTTCATAACTTCGATTTC-TAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTT
65 CGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGATGATCCATTCCTTCGAGCAA-TTT
* * * *
24639681 TC-GAAAATTTCATTCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAATA-A
128 TCAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACA
* *
24639744 ACTTTTGGTCTTTGAATTGAAAACT
192 ACTTTTGGTCTTTAAATTAAAAACT
* * * *
24639769 TATTTACGTCAGAATTGTTTCTCTCTT-GTCCTTGGACGAACTTTCGAACTGGTCAAA-ATTTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACA-TTTA
* *
24639832 CGAGTTCTTTTATAACATCAGTTCC
65 CGAGTTCTTTTATAACTTCGGTTCC
24639857 CTATTTACGT
Statistics
Matches: 2367, Mismatches: 427, Indels: 168
0.80 0.14 0.06
Matches are distributed among these distances:
196 1 0.00
197 103 0.04
199 46 0.02
200 5 0.00
201 1 0.00
204 1 0.00
205 1 0.00
206 2 0.00
207 1 0.00
208 1 0.00
209 1 0.00
210 2 0.00
211 1 0.00
213 6 0.00
214 237 0.10
215 409 0.17
216 1063 0.45
217 193 0.08
218 244 0.10
219 49 0.02
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCA
GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
TTGGTCTTTAAATTAAAAACT
Found at i:24637270 original size:521 final size:518
Alignment explanation
Indices: 24636256--24637274 Score: 1188
Period size: 521 Copynumber: 2.0 Consensus size: 518
24636246 GATTCATGTG
* * * **
24636256 AGAATTATTTCTCTCTTGGTTCTTGGATGAATTTCAGAACTTGTAAAACTTTTGGGAGTTCTTTT
1 AGAATTATTTCTCTCTTGGTTCTTGAATGAACTTCAGAACTTGTAAAACATTTACGAGTTCTTTT
*** * * *
24636321 ATAACTTCGTTCCTTAAAGTATTAAAGGGGATCCATTCCTCCGAGCAATTTTTTTAATATTCCAT
66 ATAACTTCGTTCCTTAAAGTATTAAAGACAATCCATTCCTCCGAGAAATTTTTTGAACATTCCAT
* * * * * *
24636386 GCTCGGAAAATTACATCATTTGGTTTTAATAGTGTCATTTTGTAAAAAACTTTTGGTCTTTGAAT
131 GCTCGGAAAATGACATCATTTGGTCTAAACAGTGTCATTTTGTAAAAAACGTTTGGTCTTTAAAT
** * * * *
24636451 TAAAAACTAATCTATTTGAGAATTGTTTCTCACTTGGTTTTTGAACGACCTTTCAAACTTGTCAA
196 TAAAAACTAATCTACATGAGAATTGTTTCTCACTTGCTTCTTGAACGAACTTCCAAACTTGTCAA
* *
24636516 ACATTTAAGGGTTCTTTAATAACTTCAATTCCTGAGAGTATCCAAGACGATCCATACCTTCGACC
261 ACATTTAAGAGTTCTTTAATAACTTCAATTCCTGAAAGTATCCAAGACGATCCATACCTTCGACC
* * * * *
24636581 AATTTTTAGAACATTCCATTCTCGAAAAATTGCATCATTTGGTCTAAATATTTTGTCATTTTGTA
326 AATTTTCAGAACATTACATTCTCGAAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTATA
* * * * * *
24636646 ATAAACTTTTGGTTTTTTGAATTAAAACTTATTTACGTTAGAATTATTTCTCTCTTGTTCTTGGA
391 ATAAACTTTTGGTTCTTTAAATAAAAACTTATTTACGTGAGAATTATTTCACTCTTGTTCTTAGA
** * * * * * *
24636711 CGTGCTTCTGACCTGGTCAAAATTTTACGAGTTCTTTTATAACATCGGGTCCCTATTTACGTT
456 CGAACATCCGAACTGCTCAAAACTTAACGAGTTCTTTTATAACATCGGGTCCCTATTTACGTT
* * * * *
24636774 AGAATTGTTTCTCTCTTGGTTTTTGAATGAACTTCTGAACTTGTCAAACATTTACTAGTTCTTTT
1 AGAATTATTTCTCTCTTGGTTCTTGAATGAACTTCAGAACTTGTAAAACATTTACGAGTTCTTTT
* * *
24636839 CTAACTTTGGTTCCTTAAAGTATT-AAGACAATCCATTTCGT-CGAGAAATTTTTTGAACATTCC
66 ATAAC-TTCGTTCCTTAAAGTATTAAAGACAATCCA-TTCCTCCGAGAAATTTTTTGAACATTCC
* * *
24636902 ATGCTCAGG-AAATGGCATCATTTGGTCTAAACAGTTTTTCATTTTGTAAACAACGTTTGGTCTT
129 ATGCTC-GGAAAATGACATCATTTGGTCTAAACAG--TGTCATTTTGTAAAAAACGTTTGGTCTT
* * * ** *
24636966 TAAATTAAAAACATATTTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTCCGAACT
191 TAAATTAAAAAC-TAATCTACATGAGAATTGTTTCTCACTTGCTTCTTGAACGAACTTCCAAACT
* * * ** * * * *
24637031 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATGCATTCCT
255 TGTCAAACATTTAAGAGTTCTTTAATAACTTCAATTCCTGAAAGTATCCAAGACGATCCATACCT
* * ** *
24637096 TCGAGCAATTTTCAGAACATTACA-TCTTGGGACATCGCATCATTTGGTCTAAATAGTTTGTCAT
320 TCGACCAATTTTCAGAACATTACATTCTCGAAAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* *
24637160 TTTATAA-ACAACTTTTTG-TCTTTAAAGTAAAAACTTATTTACGTGAGAATTTGTTTCACTCTT
385 TTTATAATA-AACTTTTGGTTCTTTAAA-TAAAAACTTATTTACGTGAGAA-TTATTTCACTCTT
* *
24637223 GGTTCTTAGACGAACATCCGAACTTCTC-AAACTTAATGAGTTCTTTTATAAC
447 -GTTCTTAGACGAACATCCGAACTGCTCAAAACTTAACGAGTTCTTTTATAAC
24637275 TTTGATTCTT
Statistics
Matches: 412, Mismatches: 79, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
518 112 0.27
519 30 0.07
520 104 0.25
521 147 0.36
522 19 0.05
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (518 bp):
AGAATTATTTCTCTCTTGGTTCTTGAATGAACTTCAGAACTTGTAAAACATTTACGAGTTCTTTT
ATAACTTCGTTCCTTAAAGTATTAAAGACAATCCATTCCTCCGAGAAATTTTTTGAACATTCCAT
GCTCGGAAAATGACATCATTTGGTCTAAACAGTGTCATTTTGTAAAAAACGTTTGGTCTTTAAAT
TAAAAACTAATCTACATGAGAATTGTTTCTCACTTGCTTCTTGAACGAACTTCCAAACTTGTCAA
ACATTTAAGAGTTCTTTAATAACTTCAATTCCTGAAAGTATCCAAGACGATCCATACCTTCGACC
AATTTTCAGAACATTACATTCTCGAAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTATA
ATAAACTTTTGGTTCTTTAAATAAAAACTTATTTACGTGAGAATTATTTCACTCTTGTTCTTAGA
CGAACATCCGAACTGCTCAAAACTTAACGAGTTCTTTTATAACATCGGGTCCCTATTTACGTT
Found at i:24637624 original size:431 final size:430
Alignment explanation
Indices: 24636764--24663711 Score: 14815
Period size: 432 Copynumber: 61.9 Consensus size: 430
24636754 ATCGGGTCCC
* * * * * *
24636764 TATTTACGTTAGAATTGTTTCTCTCTTGGTTTTTGAATGAACTTCTGAACTTGTCAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * * * *
24636829 TAGTTCTTTTCTAACTTTGGTTCCTTAAAGTATT-AAGACAATCCATTTCGTCGAGAAATTTTTT
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTTC
* * * *
24636893 GAACATTCCATGCTC-AGGAAATGGCATCATTTGGTCTAAACAGTTTTTCATTTTGTAAACAACG
131 GAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* *
24636957 TTTGGTCTTTAAATTAAAAACATATTTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAAC
195 TTTGGTCTTTAAATTAAAAACTTA-TTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGACGAAC
* * *
24637022 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * * * * *
24637087 TGCATTCCTTCGAGCAATTTTCAGAACATTACAT-CTTGGGACATCGCATCATTTGGTCTAAATA
323 TCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * * *
24637151 GTTTGTCATTTTATAAACAACTTTTTGTCTTTAAAGTAAAAACT
388 GTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * *
24637195 TATTTACGTGAGAATTTGTTTCACTCTTGGTTCTTAGACGAACATCCGAACTTCTCAAAC-TTAA
1 TATTTACGTGAGAA-TTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * ** *
24637259 TGAGTTCTTTTATAACTTTGATT-CTTGAGAGTGTTCAAGATGATCCATTCCAACGACCAATTTT
65 CGAGTTCTTTTATAACTTTGATTCCTT-AAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* * * ****
24637323 TCGAACATTCCATCCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGT-AAAAAGTAAACAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * *
24637387 ATTTGGTCTTTAAATTAAATATTTATTTCCATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGACGAAC
* * * * *
24637452 TTTCGAACTTGTCAAACATTTACGAGTTCTTTTCTAACTTTGGTTCCTTAAAGCATTCAAGATGA
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * ** * *
24637517 TCCATTTCGTCGAGAAATTTACCGAACATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATA
323 TCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * *
24637582 GTTTTTCATTTTGTAAACAACATTTGGTCTTTGACTTAAAAACT
388 GTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * ** ** * * * *
24637626 TATTTACATCAAAATTGTCTCTCTCTTACTTCTTGTCCGAATTTCTGAGCTTGCCAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * *
24637691 GTGTTCTTTTATAA-TTTCAGTTCCTTAAAGTACTCAAGACTATATCCATTCCTTTGAGCAATTT
66 GAGTTCTTTTATAACTTTGA-TTCCTTAAAGTATTCAAGA-TA-ATCCATTCCTTCGAGCAATTT
* * * * * * *
24637755 TTAGAACATTCCATGCTTGGGAAATCGAAGCATTTGGTCTAAATAATTTATCATTTTGTAAACAA
128 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * * *
24637820 CTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGGTTCTCCCTTCCTTCTTGGCCGAA
193 CTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGACGAA
* * * *
24637885 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAATTTCGGTTCCTAAAAGTACTCAAGATG
257 CTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATG
* * * * * * *
24637950 AACCATTCCTTTGAGCAATTTTTCGGACATTCCATGCTCGAGAAATCGCACCATTTGGT-TAAAA
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAA
* * *
24638014 TAGTTTGTCATTTTGTAAACAACTTTTGGTCGTTAAATTAAAAAGT
386 TAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
** * * * **
24638060 TATTTAAATGAGAATTGTTTCTCTATTGCTTCTT-TACCGAACTTTTGAACTTGTCAAACTTTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-CGAACTTCCGAACTTGTCAAACTTTTA
* * *
24638124 CGAGTTCTTTTATAAC-TTCAGTTCCTTAAAGTACTCAAGATTATCCATTCCTTCGA-CAAATTT
65 CGAGTTCTTTTATAACTTTGA-TTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGC-AATTT
* * * * *
24638187 TCCAAACATTCCATGC-CTGAGAAATCGCACCATTTGCTCTAAATAGTTTATCATTTTGTAAACA
128 TTCGAACATTCCATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * * * * *
24638251 ACTTTTTGTCTTAAAATTAAAAACTAATTTACGTGAGAATTTTTTGTCTCTTGCTTCTTGGACAA
192 ACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGACGA
* * * * *
24638316 ACTTCTGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGAC
256 ACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAT
* * * * * * * *
24638381 GCTTCATTCCTTCGACCAACTTTACGAACATCCCATGCTGGGGAAATCGCATCATTCGGGCTAAA
321 GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * *
24638446 TAGTTTCTTATTTTGTAATAAACTTTTTTGTCTTTGAATTAAAAAC-
386 TAGTTTGTCATTTTGTAA-AAAC-TTTTGGTCTTTGAATTAAAAACT
* * * * * * *
24638492 -ATTTTCGCT-AGAATTATTTCTCTCTTGGTTCTTGGTA-GGACTTCCAAACTTGTTATACTTCT
1 TATTTACG-TGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAACTTCCGAACTTGTCAAACTTTT
* * * * * * * *
24638554 ATGAGTTCTTTTAGAAATTCGATTCCGTAAAGTATTCAAGAAAATCCATTCCTTTGAGCAATTTC
64 ACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* * * *
24638619 TCAAACATTCCATTCTC-AGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAA
129 TCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * ** * *
24638683 CTTTTGG-CTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCAAGGTTCTTGAATGA
193 CTTTTGGTC-TTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC-TTGTTCTTGGACGA
* * * * * *
24638747 AGTTGCAAACTTGGCAAACATTTAAGAGTTATTTTATAACTTCGGTTCCTTAAATTATTCAAGAT
256 ACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAT
* * ** * * *
24638812 GATCCATT-CTATTGACAAATTTTCTAAACACTCCATGCTCGGGAAATCACATCATTTGGTTTAA
321 GATCCATTCCT-TCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * * **
24638876 ATAGTTCGTCATTTTCTAATAAATTTTTTATCTTTGAATTAAAAAC-
385 ATAGTTTGTCATTTTGTAA-AAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
24638922 -ATTTTCGTGACAATTGTTTCTCTCTTGGTTCTTGG-CAGAACTTCCGAAGTTGTTATACTTTCA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTA
* * * * *
24638985 TGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATAATTCATTCCTTCGAGCAA-TTTC
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * * *
24639049 CAGAACATTCTATGCTCGGGAAATTGCATCATTTTGTCTAAATAGTTAT-TCATTTTGTAAACAA
130 C-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAA
* * * * * *
24639113 CTTTTTGTCTTTAAAGTAGAAACTTATTTACGTGCGAATTGTTTTCACTCTTGGTTCTTGGACGA
193 CTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTG-TTTCTCTCTT-GTTCTTGGACGA
* * * * * *
24639178 ACATCCAAACTTGTCAAACA-TTAATGAGTTCTTTTATAACTTCGATT-CTTGAGAGTGTTCAAA
256 ACTTCCGAACTTGTCAAACATTTAA-GAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAG
* * * * *
24639241 ATGATCCATTTCTACGACCAATTTTCCGAACATCCCATGCTCGAGAAATCACATCATTTGGTCTA
319 ATGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
* * * * *
24639306 AATAGTTTTTTTAATTTTGTAAATAACTTTTAGTCTTTAAATTAAAAATT
384 AATAG--TTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * * * *
24639356 TATTTCCGTGAGAATAGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTTTTAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * *
24639421 GAGTTCTTTTATAAC-----TT-C----GGT-TACGAG-T--TCC--T-C--CAAGCAATTTTTC
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTTC
* * * * *
24639467 GAATATTCCATGCTCGGGAAATCGCATCATTTGGTTTTAATAGTTTGTCATTTTGTAAAAAACTT
131 GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * * *
24639532 TTGATCTTTGAATTAAAAACTTATTT-CTTTGAGAATTGTTTCCCACTTGGTTTTTGAACGAACT
196 TTGGTCTTTAAATTAAAAACTTATTTAC-ATGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACT
** * * * * *
24639596 TCTAAACTTGTCAGACATTTAAGAGTTCTTTCATAACTTCGATTTC-TAAGAGTATTCAAGACGA
259 TCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGATGA
* * * * *
24639660 TCCATTCCTTCGACCAATTTTTCGAAAATTTCATTCTCGGGAAATTGCATCATTTGGTCTAAATA
323 TCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
*
24639725 GTTTGTCATTTTGTAATAAACTTTTGGTCTTTGAATTGAAAACT
388 GTTTGTCATTTTGTAA-AAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
24639769 TATTTACGTCAGAATTGTTTCTCTCTT-GTCCTTGGACGAACTTTCGAACTGGTCAAAATTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * * * * ***
24639833 GAGTTCTTTTATAAC-ATCAGTTCCCT--A-T-TT-ACGTTAGAATTCTTTCTCTCTTG-GTTCT
66 GAGTTCTTTTATAACTTTGA-TTCCTTAAAGTATTCAAG--ATAATCCATTC-CT-TCGAGCAAT
** ** * * * *
24639891 TGGAT-GAAC-TTCCGAACTTATC-AAACATATACG-ATTTCA-TT--TCTAACT--TTGGTTCC
126 T-TTTCGAACATTCC--A-TGCTCGAGA-A-AT-CGCA--TCATTTGGTCTAAATAGTTTG-TCA
** * ** * ** * **
24639947 TTAAAGTATTCAAGATGATCCATT--TCATTGAGAAATTTACCGAACATTCCATGCT-CGGGA-A
181 TT-TTGTA---AACA--A-CTTTTGGTC-TT--TAAA-TTA-AAAAC-TT--AT-TTACATGAGA
** * * * ** ** *
24640008 ATTGCATC-AT-TTGGTC-T-AAATAGTTTTTC-ATA-TTGT-AAACAACCTTT--G-G-TCTTT
230 ATTGTTTCTCTCTTGTTCTTGGACGA-ACTTCCGA-ACTTGTCAAAC-A--TTTAAGAGTTC-TT
* ** * * * * * **
24640062 GAATTCAAAACTT-ATTTACAT-GAGAATT---GTTTCTCTC-TTGCTTCTTCGCACC-ATTTGG
289 ---TT-ATAACTTCGGTTCCTTAAAGTATTCAAGATGATC-CATT-C--CTTCG-ACCAATTT--
* * ** * * * * **** * *
24640120 TCTC-AATAGTTTGTCAT--TTTGTAAA---AAACTTTTGGTCTTTAAATTAAAAAGTTATTTAA
343 TC-CGAACA--TT-CCATGCTCGGGAAATCGCATCATTTGGTC--TAAA-TAGTTTGTCATTT-T
* * * *** ** ***
24640179 ATGACAA-TTGTTCCACTCTTGCTTCCTGGTCGAACT
400 GTAAAAACTT-TTGGTCT-TTGAAT--T--AAAAACT
**** * ** * * ** * ** ** * * **
24640215 TCCGAACTTGTCAA--ATTT-T-T-ATGAGTTCTTTTA-TAACTTTAGTTCCTG--AAAGTACT-
1 TATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * ** ** * * * * ** * *
24640271 CAAG-ACTATCCATTCCTTCGA--CC---AATTTTTCGAACAT--TCCA-T-GGTCG-GGAA-AT
65 CGAGTTCT-TTTATAACTTTGATTCCTTAAAGTATTC-AAGATAATCCATTCCTTCGAGCAATTT
** * * * * ** * *
24640324 CAC-ACCATT---TGCTCTA-AATAGTTTG--TCATTTTGTAAACAACATTTTGTC---TT-T--
128 TTCGAACATTCCATGCTCGAGAA-A--TCGCATCATTTGGTCTA-AATAGTTTGTCATTTTGTAA
***** * * *
24640376 A-AA-TTAAAAAC--T-A-----------ATTTACGTGAGAATTTTTTGTCTCTTGGTTCTTGGA
189 ACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGA
* * * *
24640425 CGAACTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTCAA
253 CGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* * * * * **
24640490 GATGATCCATTCCCTCGACCAACTTTACGAACATTCCATGCTTGGGAAATCACATCATTCCGTCT
318 GATGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT
* *
24640555 AAATAGTTTATCATTTTGTAATAAACTTTTTTGTCTTTGAATTAAAAAC-
383 AAATAGTTTGTCATTTTGTAA-AAAC-TTTTGGTCTTTGAATTAAAAACT
* * * * * * *
24640604 -ATTTTCGTTAGAATTGTTTTCTCTCTTAGTTCTTGG-CAGAACTTTCAAACTTGTTATACTTTT
1 TATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTT
* * * * * ** **
24640667 ATGAGTTCTTTTAGAAATTCGGTT-CTGTACAA-TATTCAAGACGATCCATTCCTTTAAGCAATT
64 ACGAGTTCTTTTATAACTTTGATTCCT-TA-AAGTATTCAAGATAATCCATTCCTTCGAGCAATT
* * * * * * *
24640730 TTTCGAACATTCCATTCCCGGGAAATTGCATCATTTGGTCCAAATAGTTTGTCATTTTGTACATA
127 TTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * ** *
24640795 ACTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCAAGGTTCTTGGATGA
192 ACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC-TTGTTCTTGGACGA
* * * * *
24640860 ACTAT-CAAACTTGTCAAACATTTAAGAGCTCTTTTATTACTTCGATTCCTTAAAGCATTCAAGA
256 ACT-TCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * * *
24640924 TGATCAATCCCTTGGACCAATTTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTTTAA
320 TGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * ** *
24640989 ATAGTTCGTCATTTTCTAATAAACTTTTTATCTTTGAATTAAAAA-A
385 ATAGTTTGTCATTTTGTAA-AAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * * * * *
24641035 AATTT-CGTGACAATCGTTTCTATCTTGGTTCTTAG-CAGAACTTCCAAAATTGTTATACTTTCA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTA
* * * ** * * *
24641098 TGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCTAGAAATTTTT
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* *
24641163 AGAACATTCCATGCTCTG-TAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
130 CGAACATTCCATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * ** * *
24641227 TTTTTGTCTTTAAAGTAAAAACTTATGCACACGAGAATTGTTTTCACTCTTGGTTCTTGGACGAA
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTG-TTTCTCTCTT-GTTCTTGGACGAA
* * * * * * * * *
24641292 CATCTGAACTTGTCAAACGTTGATGAGTTCTTTTATAACTTTGATT-CTTAAGAGTGTTCAACAT
257 CTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGAT
** * * * *
24641356 GATCCATTCCAACAACCAATTTTCCGAACATCCCATGCTCGGGAAATCACATCATTTGGTTTAAA
321 GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * **
24641421 TAGTTCGACATTTTCTAATAAACTTTTTATCTTTGAATTAAAAAC-
386 TAGTTTGTCATTTTGTAA-AAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
24641466 -ATTTTCGCGACAATTGTTTCTCTCTTGGTTCTTGG-CAGAACTTCCGAAATTGTTAAACTTTCA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTA
* * * * * * *
24641529 TGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-TAG-GACTCAATTCCTTCAAGCAATTTTT
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * *
24641592 CGAGCATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
130 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * *
24641657 TTT-GACTTTAAAGTAAAAACTTATTTACATGGGAATTGTTTTCACTCTTGGTTCTTGGACGAAC
195 TTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTG-TTTCTCTCTT-GTTCTTGGACGAAC
* * * * *
24641721 ATCCGAACTAGTCAAACA-TTAACGAGTTCTTTTATAACTTCGATT-CTTGAGAGTGTTCAAGAT
258 TTCCGAACTTGTCAAACATTTAA-GAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGAT
* * * * * *
24641784 GATCCATTCCTACGACTAATTTTTCAAATATTCCATGCTCGGGAAATCACATCATTTGGTCTAAA
321 GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * * * * *
24641849 TGGTTTGTAATTTTGTAAACAAGTTTTGGTCCTTAAATTAAAGATT
386 TAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * * * *
24641895 TATTTCCGTGAGAATAGTTTTTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTTAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * *** * *
24641960 AAGTTCTCTTATAACTTCGGTTAC-TAAGAGTATTCAAGACGTTTCATTCCTTCGACCAAATTTC
66 GAGTTCTTTTATAACTTTGATTCCTTAA-AGTATTCAAGATAATCCATTCCTTCGAGC-AATTT-
* * * * *
24642024 TT--AAAATTCCATGCTCGGGAAATCGCATCA-TTGAGTCTAAATAGTTTTTAATTTTGTAAAAA
128 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTG-GTCTAAATAGTTTGTCATTTTGTAAACA
* ** * * * * * *
24642086 ACATTTCATCTTTGAATTAAAAACTGATTCACATGAGAATTTTTTCTCTCTTGGTTCTTAGATGA
192 ACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGACGA
* * * * *
24642151 A-TATCAGAACTTGTAAAAC-TGTTACGAGTTCTTTTATAACTTCGGCTCCTTAAAGTATTAAAG
256 ACT-TCCGAACTTGTCAAACAT-TTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
** * ** * * * * *
24642214 GCGATCCATTCCTTCGAGCAATTTTTTGAAAATTCAATGCTCGGGAAATTGCATCATTTGGTTTT
319 ATGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
* * *
24642279 AATAGTTTGTCATTTTGTAAAAAACTTTTCGTCCTTAAATTAAAAACT
384 AATAGTTTGTCATTTTGT-AAAAACTTTTGGTCTTTGAATTAAAAACT
** * * * * * * * *
24642327 TATTTATTTGAGAATTGTTTCTCACTTGCTTTTTGAACGAACTTCCAAACTTATCAAACATTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * *
24642392 GAGTTCTTTCATAACTTCG-TTTCTTAAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTT
66 GAGTTCTTTTATAACTTTGATTCCTTAA-AGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * * * * *
24642456 CGAACATTTCATTC-CGGGAAATTGCATCATTTGGTCTAAATAGTTTGTTATTTTGTATTA-AAC
130 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAAC
* * * * * * *
24642519 -TTTGGTATTTGAATTAAAAAGTTATTTACGTTAGAATTGATTCTCTCTTGTTCTTGTACGAACT
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGTTCTTGGACGAACT
* * * *
24642583 TCCGAA-TTGGTCAAA-ATTTTACA-AGTTCTTTTATAACATCGGTTCCCTATTTACGTGA--GA
259 TCCGAACTT-GTCAAACA-TTTA-AGAGTTCTTTTATAACTTCGGTT-CC--TTAAAGT-ATTCA
* * * * * * * * *** ** *
24642643 ATTTATTATCTCTTGTTTCTTAGACGAA-CTTCCGAACTTGTCAAACAT--TTAAGAGTTCTTCT
317 A--GATGATC-C--ATTCCTTCGACCAATTTTCCGAACAT-TC---CATGCTCGGGAAATC-GC-
* ** * * *** *
24642705 ATAACA-TCGGTTCCTGAGAGTATTCAAG-ACGATCCATTCCTT-CAACCAA-TTTTACAAACAT
371 AT--CATTTGG-T-CT-A-A--A-T--AGTTTG-T-CATT--TTGTAA-AAACTTTT--GGTCTT
** *
24642766 TCCATGCTCGAGAGATCACGT
418 TGAAT--T--A-A-A-AAC-T
* * * * * * **** * * **
24642787 CATTT-GGTCTA-AATAGTTTTTCAT-TTTG-TCAACAACGTTTAGTCTT-TGAA-TT-AAAAAC
1 TATTTACGT-GAGAATTGTTTCTC-TCTTGGTTCTTGGACG---A-ACTTCCGAACTTGTCAAAC
* * * * *
24642845 TTATTTACATGAGAATTGTTTCTCTCTAGCTTCTTGGCCGGACTTCCAAACTTGTCAAACT-TTT
60 -T-TTTAC--GAG--TT-CTT-T-TATAAC-T-TT-----GA-TT-C---C-T-T-AAAGTATTC
** ** ** * ** * ** *
24642909 AAGAGTTCTTTTATAACTTCG-GTTCCTTAGAGTACTCAAGACTATATTGATTCCTTCGAGCAAT
101 AAGA--TAATCCATTCCTTCGAG---C--A-ATTTTTCGA-AC-AT-TCCA-TGC-TCGAG-AA-
* * **
24642973 TTTCTGAACATTCCATGCTCGG-AAATCGCTCCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
151 -ATC-G--CA-T-CAT--TTGGTCTA-----------------AATAGTTTGTCATTTTGTAAAC
* * * *
24643037 AACTTTTGGTCTTTCAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGG-CT
191 AACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGAC-
* ** *
24643101 GAACTTTCGAACTTGTCAAACATTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAG
254 GAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
* * * * * * *
24643166 -TCAAACTATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCT
319 AT-GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT
*
24643230 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGC-
383 AAATAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAA-CT
* *** * ** * * * *
24643279 TATTCAAAAGAGGATTGTTTCTCTCTTTCTTCTTGGTCAAACTTTCGAGCTTGTCAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * *
24643344 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACT-ATCCATTCCATCGA-CAAATTGT
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGA-TAATCCATTCCTTCGAGCAATTTTT
* * *** * *
24643407 CAAAC-TT---T--TACGAG--TTCTTTTACAACTT-GTC-AAACT--TTT-ACGAGTTCTT-T-
130 CGAACATTCCATGCT-CGAGAAATCGCAT-C-ATTTGGTCTAAA-TAGTTTGTC-A-TT-TTGTA
* * * * * * * * * *** *
24643457 TATAACTTCTGTTCCTTAAAGTACTCAAGACTATATCGATACCTTCGAGCAATT-TTTCGAACAT
188 AACAACTTTTGGTCTTTAAA-T--TAAAAACT-TAT--TTA-CAT-GAG-AATTGTTTCTCTCTT
* * * * * * *** * *
24643521 -TCCATGCTGG-GGAAATTGCTC-CATTTAGTCTAAATAGTTTTTCA-TT-TTGTAAACAACTTT
244 GTTC-T--TGGACGAACTT-C-CGAACTT-GTC-AAACA-TTTAAGAGTTCTT-T-TATAAC-TT
* * * * * * * * *
24643581 TGGTCTTTCAATTAAAAAGTTTTTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGCCGAA-CTT
298 CGG---TTC-CTT--AAAG--TATT-CA--AG-A-TG---ATCCATTCCTTC--GACC-AATTTT
* * * *** *** * * *
24643645 CCGAACTTGTCAAGCAT-TTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTACTCAAGTCGAA
344 CCGAACAT-TC---CATGCT-CGGGAAATCGCATCA-TTTGG-T-C-TAAA-TAGT----TTG--
* * * ** * ** * **
24643709 CCATTCCTTCG-AGCAAATTTTTGAACATTCCATGCTCGGGAAGTCT
393 TCATT--TT-GTA-AAAACTTTTGGTCTTTGAAT--T---AAAAACT
* * * * * * * * * *** *
24643755 CACCATTT-GGTCTA-AATAGTTTGTCAT-TTTGTAAACATCTTTTGGTCTTTAAATTAAAAAGT
1 ---TATTTACGT-GAGAATTGTTTCTC-TCTTGGT-----TC--TTGGAC--GAACTTCCGAACT
* * * *** * * * *
24643817 TATTCAAAAGAGAATTGTTTCTCTCTTTCTTCTTGGTCGAACATTCGAACTTGTCAAACTTTTAC
52 T-GTC-----A-AACT-TTT-ACGAGTTCTT-TT-AT--AAC-TTTG-A--T-TC---C-TTAAA
*** * * *
24643882 G-ACTTCTTTTATAACATCGATTCCTTAC-AGTAA----TC-AAGACTATCCATTGCTTCGAAAA
95 GTA-TTC-AAGAT-A-ATCCATTCCTT-CGAGCAATTTTTCGAACA-T-TCCA-TGC-TCG----
** * *
24643940 TTTTATGAACATTCCATGCTCGGGAAATCACACCATTTACTGTAAATAGTTTTTCATTTTGTAAA
147 ----A-GAA-A-T-C--G--C-----AT-----CATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * * * *
24644005 -AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGGGACTAT-TTTGTCTCTTGGTTCTTAGA
190 CAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTCTCTT-GTTCTTGGA
* * * * *
24644068 CAAACTTCCGAACATGTCAAACATTTAAGAGTCCTTTTATAACTTCGGTTCCTGAGAGTATTCAA
253 CGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* * * * * * * * *
24644133 GACGATCCATTCTTTCGACCAATTTTACGAACACTCCATGCTTGAGAAATCGGACCATTTGCTCT
318 GATGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT
* * * *
24644198 AAATAGTTTGTAATTTTGTAAACAACTTTTTGTATTTAAATTAAAAACT
383 AAATAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * ** *
24644247 AATTTACGTGAGAACTT-TTTGTCTCTTGCTTCTTGGAAGAACTTTTGAACTTGTCAAACATTTA
1 TATTTACGTGAGAA-TTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * * * * *
24644311 AGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATGCAAGATGATCCATTCCTTTGACCAATTTTA
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * ** * * *
24644376 CGTACTTTCCATTG-TAAAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTCGTAAACAA-
130 CGAACATTCCA-TGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * * * * * *
24644439 TTTT-TTAATTTAAATTTAAAACTAATTTACGTGAGAATTTTTTATCTCATGGTTCATAGACGAA
194 TTTTGGT-CTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC-TTGTTCTTGGACGAA
*
24644503 -TTCCGAACTTGTCAAACATTTAAGAGTTCTTCTATAACTTCGGTTCC-TAAGAGTATTCAAGAT
257 CTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGAT
** * * * *
24644566 GATCCATTCCTTCGACCAATTTTATGAGCATTCCATGCTCGAGCAATCGCATCAATTGGTCTAAA
321 GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * *
24644631 TAGTTTTTCATTTTGTAAACAACGTTTAGTCTTTGAATTAAAGACT
386 TAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
24644677 TATTTACATGAGAATTGTTTCTCTCTAGCTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * ** * ** *
24644742 GAGTTCTTTTATAACTTCGGTTCCTTTGAGTACTCAAGACTATATTGATTCCTTCGAGCAATTGT
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGA-TA-ATCCATTCCTTCGAGCAATTTT
* * * *
24644807 CCGAACATTCCTTGCTTGGGAAATCGC-TCCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
129 TCGAACATTCCATGCTCGAGAAATCGCAT-CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * *
24644871 CTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGCCAAA
193 CTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGACGAA
* * * *
24644936 CTTTCGAACTTGTCAAACATTTAGGAGTTCTTTTATAACTTCGGTTCTTTAAAGTACTCAAG-TC
257 CTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAT-
* * * * * *
24645000 GAACCATTCCTTCGAGCAAATTTT-TGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCTAA
321 GATCCATTCCTTCGA-CCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
*
24645064 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAGAA--
385 ATAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAA-AACT
** * * *
24645110 -A---A---GAGAATTGTTTCTCTCTTTCTTCTTGGTCGAACTTTCGAGCTTGTCAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * ** *
24645168 AAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGGTTGTCCATTCCATCGA-CAAATTTTA
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGC-AATTTT-
* * * * * *
24645232 T-GAACATTCCATGCTCGGGAAATCACACCATTTGCTCTAAATAGTTTTTCATTTTGTAAAAAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * *
24645296 TTTTTGTCCTTAAATTAAAAACTAATTTACGTGAGACTAT-TTTGTCTCTTGGTTCTTGGACGAA
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTCTCTT-GTTCTTGGACGAA
* ** * * * * *
24645360 CTTTCGAACAAGTCAAACATTTAAGAGTTCTTTTATAACTTCAGTTCCTGAGAGTACTCAAGACG
257 CTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATG
* * * * * * * * *
24645425 ATACATTCTTTCGACCAATTTTACGAACATTCCATGCTTGAGAAATCGTACCATTTGCTCTATAT
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* ** * *
24645490 AGTTTGTTATTTTGTAAACAACTTTTTCTATTTAAATTAAAAACT
387 AGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
24645535 AATTTACATGAGAATTTTTTGTCTCTTGCTTCTTGGACGAACTGT-CGAACTTGTCAAACATTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAACTTTTA
* * * * * ** *
24645599 AGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTATGCAAGACGATCCATTCCTTCGACCAATTTT
65 CGAGTTCTTTTATAACTTTGATTCCTT-AAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* * * * * *
24645663 ACGAACTTTCCATTCTGGAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTGTAAACAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
**** * * * * *
24645728 TTTTTAAATTTAAATTAAAAACTAATTTACGTGAGAATTTTTTATCTCTTGGTTCTTAGACGAAC
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGACGAAC
* * *
24645793 TTCCGAACTTGTCAAACATTTAAGAGTTCTTCTGTAACTTCGGTTCC-TAAGATTATTCAAGATG
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGATG
* * * * * *
24645857 ATCCATTCCTTTGACCAATTTTACGAGCATTCCATGCTCGAGAAATCGCAACAATTGGTCTAAAT
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
24645922 AGTTTTTCATTTTGTAAACAACGTTTAGTCTTTGAATTAAAAACT
387 AGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * * * *
24645967 TATTTACATGAGAATTGTTTCTCTCTAGCTTCTTGGCCGGACTTCCAAACTTGTCAAACTTTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * ** * * *
24646032 GAGTTCTTTTATAACTTCGGTTCCTTTTGAGTACTCAAGACTATATCGATTCCTTCGAGCAATTG
66 GAGTTCTTTTATAACTTTGATTCC-TTAAAGTATTCAAGA-TA-ATCCATTCCTTCGAGCAATTT
* * * *
24646097 TCCGAACATGCCTTGCTCGGGAAATCGC-TCCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
128 TTCGAACATTCCATGCTCGAGAAATCGCAT-CATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * * * *
24646161 ACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCCTTACTTCTTGGCCGA
192 ACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGACGA
* *
24646226 ACTTTCTAACTTTCGAACTTGTCAAACATTTAGGAGTTCTTTTATAACTTCGGCTCCTTAAAGTA
256 AC--T-T--C---CGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * * * * *
24646291 CTCAAG-TCGAACCATTCCTTTGAGCAAATTTT-CGATCATTCCACGCTCGGGAAGTCTCACCAT
313 TTCAAGAT-GATCCATTCCTTCGA-CCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCAT
* *
24646354 TTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTAGTCTTTAAATTAAACAA--
376 TTGGTCTAAATAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAA-AACT
** * * *
24646409 -A---A---GAGAATTGTTTCTCTCTTTCTTCTTGGTCGAACTTTCGAGCTTGTCAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * *
24646467 AAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGATTATCCATTCCATCGA-CAAATTTTA
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGC-AATTTT-
* * * * * *
24646531 T-GAACATTCCATGCTCGGGAAATCACACCATTTGCTCTAAATAGTTTTTCATTTTGTAAAAAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * *
24646595 TTTTTGTCCTTAAATTAAAAACTAATTTACGTGAGACTAT-TTTGTCTCTTGGTTCTTGGACGAA
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTCTCTT-GTTCTTGGACGAA
* * * * * * * *
24646659 CTTTCGAACATGTCAAACATTTATGAGTTCTTTTATAACTTCAGTTCCTGAGAGTACTCAAGACG
257 CTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATG
* * * * * * * *
24646724 ATACATTCTTTCGACCAATTTTACGAACATTCCATGCTTGAGAAATCGCACCATTTGCTCTATAT
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
24646789 AGTTTGTCATTTTGTAAACAACTTTTTGTATTTAAATTAAAAACT
387 AGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * * * *
24646834 AATTTACATGAGAATTTTTTGTCTCTTGCTTCTTGGACGAA-TTGTCGAACTTGTCAAACATTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CCGAACTTGTCAAACTTTTA
* * * * * ** *
24646898 AGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTATGCAAGACGATCCATTCCTTCGACCAATTTT
65 CGAGTTCTTTTATAACTTTGATTCCTT-AAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* * * * * *
24646962 ACGAACTTTCCATTCTGGAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTGTAAACAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* ** * * * * *
24647027 TTTTTGAATTTAAATTAAAAACTAATTTACGTGAGAATTTTTTATCTCTTGGTTCTTAGACGAAC
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGACGAAC
** * *
24647092 TTCCGAACTTGTCAAACATTTAAGAGTTCTCCTATAACTTCGATTCC-TAAGAGTATTCAAGACG
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGATG
* * * *
24647156 ATCCATTCCTTCGACCAATTTTACGAACATTCCATGCTCGAGAAATCACGTCATTTGGTCTAAAT
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
24647221 CA-TTTTTCATTTTGTAAACAACGTTTGGTCTTTAAATTAAAAACT
387 -AGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * * * * *
24647266 TATTTACATAAGAATTGTTCCGCTCTAGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * *
24647331 GAGTTCTTTTATAACTTCCG-TTCCTTAAAGTACTCAAGACTATATCGATACCTTCGAGTAATTT
66 GAGTTCTTTTATAACTT-TGATTCCTTAAAGTATTCAAGA-TA-ATCCATTCCTTCGAGCAATTT
* * *
24647395 TTC-AAGCATTCCATGCTCGGGAAATTGC-TCCATTTGGTCTAAATAGTTTTTCATTTTGTAAAC
128 TTCGAA-CATTCCATGCTCGAGAAATCGCAT-CATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * * * * *
24647458 AACATTTGGTCTTTCAATT-AAAAGTTTTTTAAATGAGAATTGTTTCTCCCTTGCTTCTCGGTCG
191 AACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGACG
* * * * *
24647522 AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATATCTTCGATTCCTT-AAGTACTCAAG-
255 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * ** *
24647585 TCGAACCATTCCTTCGAGCAAATTT-CGAACATTCCATGCTCGGGAAGTCTTACCATTTGGTCTA
320 T-GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
* * *
24647649 AATAGTTTGCCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGT
384 AATAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* *** ** * *
24647697 TATTCAAAAGAGAATTGTTTCTCTCTTTCTTCTTGGTCGAACATT-CGAACTTGTCAGACTTTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCGAACTTGTCAAACTTTTA
* * * * * * *
24647761 CGACTTATTTTATAACATCGATTCCTTACAGTAATCAAGACT-AGCCATTCCTTCGA-CAAATTT
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGA-TAATCCATTCCTTCGAGC-AATTT
* * * * * ** * * *
24647824 AT-GAACATTCCATGATCGGGAAATCACACCATTTACTGTAAATAGTTTTTCATTTTGTAAAAAA
128 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * *
24647888 TCTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGACTAT-TTTGTCTCTTGGTTCTTAGACG
193 -CTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTCTCTT-GTTCTTGGACG
* * * * *
24647952 AACTCCCGAACATGTCAAACATTTAAGAGTCCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGA
255 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * * * *
24648017 CGATCCATTCTTTCGACCAATTTTACGAACACTCCATGCTTGAGAAATCGCACCATTTGCTCTAA
320 TGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * * *
24648082 ATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTAAATTTAAAACT
385 ATAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * * * *
24648129 AATTTACGTGAGAACTT-TTTGTGTCTTGCTTCTTGGAAGAACTTTCGAACTTGTCAAACATTTA
1 TATTTACGTGAGAA-TTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * * ** * * *
24648193 AGAG-TCTTTTATAACTTCGGTTCCTGACAGTATGCAAGACGATCCATTCCTTTGACCAATTTTA
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * * ** * * *
24648257 CGTACTTTCCATTCTAAAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTCGTAAACAA-T
130 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * * * * * *
24648321 TTT--TAATTTAAATTTAAAACTAATTTACGTGAGAATTTTTTATCTCATGGTTCATAGACGAAC
195 TTTGGT-CTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC-TTGTTCTTGGACGAAC
* * *
24648384 TTCCGACCTTGTCAAACATTTAAGAGTTCTTCTATAGCTTCGGTTCC-TAAGAGTATTCAAGATG
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGATG
* * * *
24648448 ATCCATTCCTTCGACCAATTTTAC-AAGCATTCCATGCTTGAGAAATCGCATCAATTGGTCTAAA
322 ATCCATTCCTTCGACCAATTTTCCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * *
24648512 TAGTTTTTCATTTTGTAAACAACGTTTAGTCTTTGAATTAAAAACT
386 TAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
24648558 TATTTACATGAGAATTGTTTCTCTCTAGCTTCTTGGCCGGACTTCC-AACTTGTCAAACTTTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * ** * * *
24648622 GAGTTCTTTTATAACTTCGGTTCCTTTGAGTACTCAAGACTATATCGATTCCTTCGAGCAATTGT
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGA-TA-ATCCATTCCTTCGAGCAATTTT
* * *
24648687 CCGAACATTCCTTGCTCGGGAAATCGC-TCCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
129 TCGAACATTCCATGCTCGAGAAATCGCAT-CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * *
24648751 CTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGCCGAA
193 CTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGACGAA
* * * *
24648816 CTTTCGAACTTGTCAAACATTTAGGAGTTCCTTTATAACTTCGGTTCCTTAAAGTACTCAAG-TC
257 CTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAT-
* * * ** *
24648880 GAACCATTCCTTCGAGCAAATTTT-CGAACATTCCATGCTCGGGAAGTCTAACCATTTGGTCTAA
321 GATCCATTCCTTCGA-CCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* *
24648944 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTGAACAA--
385 ATAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATT-AAAAACT
** * * *
24648990 -A---A---GAGAATTGTTTCTCTCTTTCTTCTTGGTCGAACTTTCGAGCTTGTCAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * * *
24649048 AAGTTCTTTTATAACTTCGGTTCCTTAAATTACTCAAGATTATCCATTCCATCGA-CAAATTTTA
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGC-AATTTT-
* * * *
24649112 T-GAACATTCCGTGCTCGAGAAATCGCACCATTTGCTCTATATAGTTTGTCATTTTGTAAACAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * *
24649176 TTTTTGTATTTAAATTAAAAACTAATTTACATGAGAATTTTTTGTCTCTTGCTTCTTGGACGAAC
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGACGAAC
* * *
24649241 TGT-CGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTATGCAAGAC
258 T-TCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGAT
* * * * * * * *
24649304 GATCCATTCCTTCGACCAATTTTACGAACTTTCAATTCTAGAGAAATCGCACCATTTGCTCTAAA
321 GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* ** *
24649369 TAGTTTGTCATTTTGTAAACAACTTTTTGAATTTAAATTAAAAACT
386 TAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
24649415 AATTTACGTGAGAATTTTTTATCTCTTGGTTCTTAGACGAACTTCCGAACTTGTCAAACATTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * ** * *
24649480 GAGTTCTTCTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTAC
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTTC
* * *
24649545 GAACATTCCATGCTCGAGAAATCGCGTCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACGT
131 GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * *
24649610 TTGGTCTTTAAATTAAAAACTTATTTACATAAGAATTGTTCCGCTCTAGCTTCTTGGCCGAACTT
196 TTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTT
* * * *
24649675 CCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTC-GTTCCTTAAAGTACTCAAGACTAT
260 CCGAACTTGTCAAACATTTAAGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGA-T-G
* * ** * *
24649739 ATCGATACCTTCGAGTAATTTT-CGAGCATTCCATGCTCGGGAAATTGC-TCCATTTGGTCTAAA
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCAT-CATTTGGTCTAAA
* * * *
24649802 TAGTTTTTCATTTTGTAAACAACATTTGGTCTTTCAATTAAAAAGT
386 TAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* ** * * * * *
24649848 TTTTTAAATGAGAATTGTTTCTCCCTTGCTTCTCGGTCGAACTTCCGAACTTGTCAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * *
24649913 GAGTTCTTTTATATCTTCGATTCCTTAAAGTACTT-AAG-TCGAA-CCATTCCTTCGAGCAAATT
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTA-TTCAAGAT--AATCCATTCCTTCGAGCAATTT
* * * * *
24649975 TCCGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTC-AAATAGTTTGTCATTTTGTAAACAA
128 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * *
24650039 CTTTTGGTCTTTAAATTAAAAAGTTATTCAAAAGAGAATTGTTTCTCTCTTTCTTCTTGGTCGAA
193 CTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC-TTGTTCTTGGACGAA
* * * * * * * *
24650104 CATT-CGAACTTGTCAAACTTTTACGACTTCCTTTATAACATCGATTCCTTACAGTAATCAAGAC
257 C-TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-
* ** * * * ** *
24650168 T-ATCCATTCCTTCGACAAATTTTATGAACATTCCATGCTCGGCAAATCACACCATTTACTGTAA
320 TGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* *
24650232 ATAGTTT-TACATTTTGTAAAAATCTTTTTGTCTTTAAATTAAAAACT
385 ATAGTTTGT-CATTTTGTAAAAA-CTTTTGGTCTTTGAATTAAAAACT
* * * * * * * *
24650279 AATTTACGTGAGACTAT-TTTGTCTCTTGGTTCTTAGACAAACTTTCGAACATGTCAAACATTTA
1 TATTTACGTGAGAAT-TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * * ** * *
24650343 AGAGTCCTATTATAAC-TTCAGTTCCTGAGAGTATTCAAGACGATCCATTCTTTCGACCAATTTT
65 CGAGTTCTTTTATAACTTTGA-TTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* * * * *
24650407 ACGAACACTCCATGCTTGAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTGTAAACAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * *
24650472 TTTTTGTATTTAAATTAAAAACTAATTTACGTGAGAACTT-TTTGTCTCTTGCTTCTTGGAAGAA
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAA-TTGTTTCTCTCTTG-TTCTTGGACGAA
* * * *
24650536 CTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATGCAAGATG
257 CTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATG
* * * * * * * * *
24650601 ATCCATTCCTTTGACCAATTTTACGTACTTTCCATTCTAGAGAAATCGCACCATTTGCTCTAAAT
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * ** * *
24650666 AGTTTTTCATTTTGTAAACA-TTTTTTTAATTT-ATATTTAAAACT
387 AGTTTGTCATTTTGTAAAAACTTTTGGT-CTTTGA-ATTAAAAACT
* * * * * * *
24650710 AATTTACGTGAGAATTTTTTATCTCATGGTTCTTAGACGAACTTCCGAACTTGTCAAACATTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * *
24650775 GAGTTCTTCTATAACTTCGGTTCC-TAATAGTATTCAAGATGATCCATTCCTTCGACCAA-TTTA
66 GAGTTCTTTTATAACTTTGATTCCTTAA-AGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * * * *
24650838 CGAGCATTCCATGCTCGAGAAATCGCAACAATTGGTCTAAATAGTTTTTCATTTTGTAAACAACG
130 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
24650903 TTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTAGCTTCTTGGCCGGACT
195 TTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACT
* * ** * *
24650968 TCCAAACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTTGAGTACTCAAGACTAT
259 TCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-T-G
** * *
24651033 ATTGATTCCTTCGAGCAATTTTCCGAACATTCCTTGCTCGGGAAATCGC-TCCATTTGGTCTAAA
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCAT-CATTTGGTCTAAA
*
24651097 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGT
386 TAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
** * * * *
24651143 TATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGG-CGTAACTTTCGAACTTGTCAAACATTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTCCGAACTTGTCAAACTTTTA
* * * * * * *
24651207 GGAGTTATTTTATAACTTCGGTTCCTTAAAGTACTCAA-CTCGAA-CCATTCCTTCGAGCAAATT
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAT--AATCCATTCCTTCGAGCAATTT
* * * * *
24651270 TTCGAACACTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
128 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * *
24651335 CTTTTGGTCTTTAAATT--AAAC--A---A-AAGAGAATTGTTGCTCCCTTTCTTCTTGGTCGAA
193 CTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC-TTGTTCTTGGACGAA
* * * * *
24651392 CTTTCGAGCTTGTCAAACTTTTACA-AGTTCTTTTATAACTTCGGTTCCTTAAAGCACTCAAGAT
257 CTTCCGAACTTGTCAAACATTTA-AGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAT
* * ** ** * * * * **
24651456 TATCCATTCCATCGATAAATTTTATGAACATTCCCTGCTCGAGAAATCACACCATTTGCCCTAAA
321 GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * *
24651521 TAGTTTTTCATTTTGTAAAAAACTTTTTGTCCTTAAATTAAAAACT
386 TAGTTTGTCATTTTGT-AAAAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
24651567 AATTTACGTGAGACTAT-TTTGTCTCTTGGTTCTTGGACGAACTTCCGAACATGTCAAACATTTA
1 TATTTACGTGAGAAT-TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * ** * * *
24651631 AGAGTTCTTTTATAAC-TTCAGTTCCTGAGAGTACTCAAGACGATACATTCTTTCGACCAATTTT
65 CGAGTTCTTTTATAACTTTGA-TTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* * * * *
24651695 ACGAACATTCCATGCTTGAGAAATCGCACCATTTGCTCTATATAGTTTGTCATTTTGTAAACAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * *
24651760 TTTTTGTATTTAAATTAAAAACTAATTTACATGAGAATT-TTT-TCTCTTGCTTCTTGGACGAAC
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGACGAAC
* * * * * ** *
24651823 TTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCAGTTCCTGAGAGCATGGAAGACGA
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * * ** *
24651888 TCCATTCCTTCGACCAA-TTTCACGAACTTTCCATTCT-GGAGAAATCGCACCATTTTCTCAAAA
323 TCCATTCCTTCGACCAATTTTC-CGAACATTCCATGCTCGG-GAAATCGCATCATTTGGTCTAAA
* ** *
24651951 TAGTTTGTCATTTTGTAAACAACTTTTTGAATTTAAATTAAAAACT
386 TAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * * * *
24651997 AAGTTACGTGAGAATTTTTTATCTCTTGGTTCTTAGACGAACTTCCGAACTTGTCAAACATTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * ** * *
24652062 GAGTTCTTTTATGACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCTTTCGACCAATTTTAT
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT-T
* * * *
24652127 -GAACATTCCATGCTCGAGAAATCACGTCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACG
130 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * *
24652191 TTTGGTCTTTAAATTAAAAACTTATTTACATAAGAATTGTTTCGT-TCTAGCTTCTTGGCCGAAC
195 TTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTC-TCTCTTG-TTCTTGGACGAAC
* * *
24652255 TTCCG-ACTTGTCAAACTTTTACA-AGTTCTTTTATAACTTCCGTTCCTTAAAGTACTCAAGACT
258 TTCCGAACTTGTCAAACATTTA-AGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-T
* * * ** * * *
24652318 ATATCGATACCTTCGAGTAATTTTTCGAACATTCCATGCTCGAGAAATTGC-TCCATTTGGTCTA
321 -GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCAT-CATTTGGTCTA
* * *
24652382 AATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTTCAATT--AAATT
384 AATAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* ** * * * * * * *
24652428 TTTTTAAATGAGAATTGTTTCTCCCTTGCTTCTCGGCCAAACTTCCAAACTTGTCAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * * *
24652493 GAGTTCTTTTATATCTTCGGTTCCCTAAAGTACTCAAG-TCGAA-CCATTCCTTCGAGCAAATGT
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAT--AATCCATTCCTTCGAGCAATTTT
* * * *
24652556 TCGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * *
24652621 TTTTGGTCTTTAAATTAAAAAGTTATTCAAAAGAGAATTGTTTCTCTCTTTCTTCTTGGTCGAA-
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC-TTGTTCTTGGACGAAC
* * * * * * * * *
24652685 TATTCGAACTTGTCAAACTTTTACGACTTCTTTTGTAACATCGATTCCTTACAGTAATCAAGACT
258 T-TCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-T
* ** * * * ** *
24652750 -ATCCATTCCTTCGACAAATTTTATGAACATTCCATGCTCGGCAAATCACACCATTTACTGTAAA
321 GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * *
24652814 TAGTTTTTCATTTTGTAAAAAACTTTTTGTCTTTAAATTAAAAACT
386 TAGTTTGTCATTTTGT-AAAAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * *
24652860 AATTTACGTGGGACTAT-TTTGTCTCTTGGTTCTTAGACGAACTTCCGAACATGTCAAACATTTA
1 TATTTACGTGAGAAT-TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * * ** * * *
24652924 AGAGTTCCTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCTTTCGACCAATTTTA
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * * *
24652989 CGAACACTCCATGCTTGAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTGTAAACAACT
130 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
24653054 TTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAACTT-TTTGTCTCTTGCTTCTTGGAAGAAC
195 TTTGGTCTTTAAATTAAAAACTTATTTACATGAGAA-TTGTTTCTCTCTTG-TTCTTGGACGAAC
* * * * * *
24653118 TTTCGAACTTGTCAAACATTGAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATACAAGACGA
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * * * * * * * * *
24653183 TCCATCCCTTCGACCAATTTTACGTACTTTCCATTCTAGAGAAATCCCACCATTTGCTCTAAATA
323 TCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * * *
24653248 GTTTGTCATTTCGTAAACAA-TTTT-TTAATTT-ATATTTAAAACT
388 GTTTGTCATTTTGTAAA-AACTTTTGGT-CTTTGA-ATTAAAAACT
* * * * * * *
24653291 AATTTACGTGAGAATTTTTTATCTCATGGTTCTTAGACGAACTTCCGAACTTGTCAAACATTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * *
24653356 GAGTTCTTCTATAACTTCGGTTCC-TAAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTA
66 GAGTTCTTTTATAACTTTGATTCCTTAA-AGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * * * *
24653420 CGAGCATTCCATGCTCGAGAAATCGCATCAATTGGTCTAAATAGTTTTTCGTTTTGTAAACAACG
130 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * *
24653485 TTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTAGCTTCTTGG-CTGGAC
195 TTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGAC-GAAC
* * * * *
24653549 TTCCAAACTTATCAAACTTTTAAGAGTTCTGTTATAACTTCGGTTCCTTAGAGTACTT-AAGACT
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGA-T
* * * ** *
24653613 ATATCTATTCCTTCGAGCAATTTTTTGAACGTTCCATGCTCGGGAAATCGC-TCCATTTGGTCTA
321 -GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCAT-CATTTGGTCTA
* * *
24653677 AATAGTTTGTCATTTTGTTAACAACTTTTGGACTTTGAATTAAAAAGT
384 AATAGTTTGTCATTTTG-TAAAAACTTTTGGTCTTTGAATTAAAAACT
** * * * * *
24653725 TATTTAAATGAGAATTGTTTCTCCCTTGCTTTTTGGCCGAACTTCCGAACTTGTCAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * *
24653790 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTAAAG-TCAAACCATTCCTTCAAGCAA-TTTT
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAT-AATCCATTCCTTCGAGCAATTTTT
* * * * * *
24653853 CTGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTAGTCATTTTGTAAAAAAC
130 C-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* ** * * *
24653918 TTTTGGTCCTTAAATTAAAAACTTATTTATTTGAGAATTGTTTCTCACTTGATTTTTGAACGAAC
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGACGAAC
* * * * * * *
24653983 TTCCAAACTTTTCAAACATTTAAGAGTTCTTTCATAACTTC-ATTTCTTGAGAGTATTGAAGATG
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGATG
* * * * *
24654047 ATCCATTCCTTCGACCAATTTTTCGAACATTTCATTCCCGGGAAATTGCATCATTTGGTCTAAAT
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * * *
24654112 AGTTTGTTATTTTGTATTAAACTTTTTGTATTTGAATTAAAAAGT
387 AGTTTGTCATTTTGTA-AAAACTTTTGGTCTTTGAATTAAAAACT
** * * * * *
24654157 TATTTAAATGAGAATTGTTTCTCCCTTGCTTTTTGGCCGAACTTCCGAACTTGTCAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * *
24654222 GAGTTCTTTTATAACTTTGGTTCCTTAAAGTACTAAAG-TCAAACCATTCCTTCGAGCAA-TTTT
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAT-AATCCATTCCTTCGAGCAATTTTT
* * * *
24654285 CTGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
130 C-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * *
24654350 TTTTGGTCTTTAAATT-AAAAGTTATTCAAAAGAGAATTGTTTCTCTCTTTCTTCTTGGTCGAAC
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC-TTGTTCTTGGACGAAC
* * * * * * * *
24654414 ATT-CGAACTTGTCAAACTTTTACGACTTCTTTTATAACATCGATTCGTTACAGTAATCAAGACT
258 -TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-T
* ** * * * ** *
24654478 -ATCCATTCCTTCGACAAATTTTATGAACATTCCATGCTCGGCAAATCACACCATTTACTGTAAA
321 GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * *
24654542 TAGTTTTTCATTTTGTAAAAAACTTTTTGTCTTTAAAATAAAAACT
386 TAGTTTGTCATTTTGT-AAAAACTTTTGGTCTTTGAATTAAAAACT
* * ** * * * *
24654588 AATTTACGTGAGACTAT-TTTGACTCTTGGTTCTTAGAAGAACTTCCGAACATGTCAAACATTTA
1 TATTTACGTGAGAAT-TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * ** * * *
24654652 AGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCTTTCGACCAA-TTTA
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * * * *
24654716 CGAACACTCCATGCTTGAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTGTAAAAAACT
130 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * * * *
24654781 TTTTGTATTTAAATTAAAAACTAATTTACGTGAGAACTT-TTTGTCTTTTGCTTCTTGGAAGAAC
195 TTTGGTCTTTAAATTAAAAACTTATTTACATGAGAA-TTGTTTCTCTCTTG-TTCTTGGACGAAC
* * * *
24654845 TTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTATACAAGACG
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGATG
* * * * * * * *
24654909 ATCCATTCCTTC-ACCAATTTTACGTACTTTCCATTCTAGAGAAATCGCACCATTTGCTCTAAAT
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * *
24654973 AGTTTGTCATTTCGTAAACAA-TTTT-TTAATTT-ATATTTAAAACT
387 AGTTTGTCATTTTGTAAA-AACTTTTGGT-CTTTGA-ATTAAAAACT
* * * * * * * *
24655017 AATTTACGTGAGAATTTTTTATCTCATGGTTCTTAGACGAACTTCTGAACTTGTCAAACATTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * * *
24655082 GAGTTCTTCTATAACTTCGGTTCC-TAAGAGTATTCAAGATGATCCATACCTTCGACCAATTTTA
66 GAGTTCTTTTATAACTTTGATTCCTTAA-AGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * * * *
24655146 CGAGCATTCCATGCTCGAGAAATCGCATCAATTGGTCTAAATAGTTTTTCGTTTTGTAAACAACG
130 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * *
24655211 TTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTAGCTTCTTGG-CTGGAC
195 TTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGAC-GAAC
* * *
24655275 TTCCGAACTTGTCAAACTTTTAAGAGTTCTGTTATAACTTCGGTTCCTTAGAGTACTT-AAGACT
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGA-T
* * * ** *
24655339 ATATCTATTCCTTCGAGCAATTTTTTGAACGTTCCATGCTCGGGAAATCGC-TCCATTTGGTCTA
321 -GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCAT-CATTTGGTCTA
* * *
24655403 AATAGTTTGTCATTTTGTTAACAACTTTTGGACTTTGAATTAAAAAGT
384 AATAGTTTGTCATTTTG-TAAAAACTTTTGGTCTTTGAATTAAAAACT
** * * * * * *
24655451 TATTTAAATGAGAATTATTTCTCCCTTGCTTTTTGGCCGAACTTCCGAACTTGTCAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * *
24655516 GAGTTCTTTTATAACTTAGGTTCCTTAAAGTACTAAAG-TCAAACCATTCCTTCGAGCAA-TTTT
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAT-AATCCATTCCTTCGAGCAATTTTT
* * * * *
24655579 CTGAACATTCCATGCTCAAGAAGTCTCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAC
130 C-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * ** ** * *
24655644 TTTTGGTCCTTAGATTAAAAACTTATTTATTTGAGAATTGTTTCTCAGTTGATTTTTGAACGAAC
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG-TTCTTGGACGAAC
* * * * * *
24655709 TTCCAAACTTTTCAAACATTTAAGAGTTCTTTCATAACTTC-GTTTCTTGAGAGTATTGAAGATG
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGATG
* * * * *
24655773 ATCCATTCCTTCGACCAATTTTTCGAACATTTCATTCCCGGGAAATTGCATCATTTGGTCTAAAT
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * * *
24655838 AGTTTGTTATTTTGTATTAAACTTTTTGTATTTGAATTAAAAAGT
387 AGTTTGTCATTTTGTA-AAAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
24655883 TATTTATGTTAGAATTGTTTCTCTCTT-GTTCTTGTACGAACTTTCGAA-TTGGTCAAAATTTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT-GTCAAACTTTTA
* * * * * * * ** * * * *
24655946 CAAGTTCTTTTATAACATCGGTTCCCTATTTACGTGA--GAATTTTTTATCTCTTGGTTCTTAGA
65 CGAGTTCTTTTATAACTTTGATT-CC--TTAAAGT-ATTCAA--GATAATC-CAT--TCCTTCGA
* ** * * * * ** * ** * *
24656009 TG-AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTCTATAACACCGGTTCCTGAGAGTATTCA
121 -GCAA-TT------TT-TCGAACA-TT-CCA-TGC-TCGAGAA-ATCGCATCATTTG-GT-CTAA
* * * * * ** * ** * *
24656073 AGACG-AT-CCATTCCTT-CAACCAA-TTTTACGAACATTCCATGCTCGAGAAACCGCGTCATTT
170 ATA-GTTTGTCATT--TTGTAAACAACTTTT--GGTCTTTAAAT--T--A-AAA--AC-TTATTT
* ** * ** ** * *
24656134 GGTC-T-A-AATAATTT-T-TCATT-TT-GTAAAC-AACGTTTAG-TCTTTGAATTAGAAACTTA
222 --ACATGAGAATTGTTTCTCTC-TTGTTCTTGGACGAAC-TTCCGAAC-TTG---T-CAAAC--A
* * * * *
24656190 TTTACATGAGAATTGTTTCTCTCTAGCTTCTTGG-TCGGACTTCTGAACTTGTCAAACTTTTAAG
276 TTTA-A-GAG--TT-CTT-T-TATAACTTC--GGTTC---C-T-T-AA--AGT---A--TTCAAG
* * ** * * * * * * * *
24656254 A-GTTCTTTTATAACTTCGGTTCCTTAGA-GTACTCAAGACTATATCGATTCGTTCGAGCAATTT
319 ATGATC---CATTCCTTC-G-ACC--A-ATTTTC-CGA-AC-AT-TCCA-T-GCTCG-GGAA--A
* * * * * * * *
24656317 TCCGAACGTTCCATGCTTGG--GAAATCG-CTCT-ATTTGGTCTAAATA-GTTT-GTCATTTTG-
367 T-CG--C-AT-CAT--TTGGTCTAAATAGTTTGTCATTT--TGTAAAAACTTTTGGTC--TTTGA
*
24656375 -TTAACAACT
421 ATTAAAAACT
** ** * * *** * ***
24656384 T-TTGGT-C-TTTGAATTAAAAAGTTAT-T-TAAATGAGAATTGTT--TCTCCCTTGC-TTTTTG
1 TATT--TACGTGAGAATT-----GTT-TCTCT-CTTG-G--TTCTTGGACGAACTTCCGAACTT-
* * * * * * * * * * ** **
24656441 GCCGAAC--TTCCGAATT-TGTCA-AACATTTACGAGTTCTTTTATAACT-TT--GGTTCCTTAA
53 GTCAAACTTTTACGAGTTCTTTTATAAC-TTT--GA-TTC-CTTA-AAGTATTCAAGAT-AATCC
* * ** ** * * * *
24656499 AGTAC-TAAAGTCAAACCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAGTCTCAC
111 ATTCCTTCGAG-C-AA-TTTT--------------TC-GAACATTCCATGCTCGAGAAATCGCAT
* *
24656563 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTCA
158 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTA
* * * * ** * * * *
24656628 AAAGAGAATTGTTTCTCTCTTTCTTCTTGGTCGAACTTTTGAGCTTGTCAAACTTTTACGAGTTT
223 CATGAGAATTGTTTCTCTC-TTGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAAGAGTTC
* * * * * **
24656693 TTTTATAACTTCGGTTCCTTAAAGTACTCGAGACT-CTCCATTCCATCGACAAATTTTATGAACA
287 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-TGATCCATTCCTTCGACCAATTTTCCGAACA
* * * * ** *
24656757 TTCCATGCTCGGGAAATCACACCATTTGCTCTAAATAGTTTTTCA--TT-TAAGAGTTCTTTT-A
351 TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-A-AACTTTTGG
* ** * *
24656818 TAACTTCG-ATTGCTGAGA-G
414 T--CTTTGAATT--AAAAACT
* * * ** * * ** *
24656837 TATTCAAGACGATCCATTCTTTCGAC-C--AATT-TT--ACGAACATTCC-ATGCTTGAGAAATC
1 TATTTACG-TGA-GAATTGTTTC-TCTCTTGGTTCTTGGACGAAC-TTCCGA-ACTT--G---TC
** * * ** ** * * * ** *** * * *
24656895 GCACTATTTGCTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTAA-ATTAAAAACTA
56 AAACT-TTT--ACGAGTTCTTTTATAACTTTG-ATTC--CTTAAAGTATTCAAGA-T--AATC-C
* * * * * * * * * ** * * *
24656959 ATTTACGT-GAG-AATTTTTTG-TCTCTTGC-TTCTTGGACAAACTTTCA-AACTT-GTC-AAAC
111 A-TTCCTTCGAGCAATTTTTCGAAC-ATTCCATGC-TCGAGAAA-TCGCATCATTTGGTCTAAAT
*** * * * * * * * * *
24657017 A-TTTAAGAGTTCTT-T-TATAAC-TTCGGT-TCCTAAGAGTATGCAAGAC-GATCCATTCCTTC
172 AGTTTGTCA-TT-TTGTAAACAACTTTTGGTCT-TTAA-A-T-T-AAAAACTTAT---TTACAT-
* * *** * * * * * * * ***
24657076 GACCAATT-TTACAAACATTCCATTC-TAGA-GAAATTGCAGCATTTGCTCTAAATAGTTTGTCA
226 GA-GAATTGTTTCTCTC-TT--GTTCTTGGACGAACTT-CCGAACTTG-TC-AAACA-TTTAAGA
* * * * ** * * *
24657138 -TT-TTGTAAATGACTTTTTGAATTTAAATTAAAAACTAATGTACATGAGAATTTTTTATCTCTT
283 GTTCTT-T-TATAAC--TTCG--GTT-CCTT--AAAGT-AT-T-CA--AG-A----TGATC-CAT
* * ** * *** ** * * *
24657201 GGTTCTTAGA-CAAACTTCCGAACTTGTCAAACAT--TTAAGAGTTCTTCTATAACTTCGGTTCC
328 --TCCTTCGACCAATTTTCCGAACAT-TC---CATGCTCGGGAAATC-GC-ATCA-TTTGG-T-C
* ** ** * **
24657263 TGAGAGTA-TTCAATACGATCCATTCTT-TCGACCAA-TTTTACGAACATTCCATGCTCGAGAAA
382 T-A-AATAGTT---T--G-T-CATT-TTGT--AAAAACTTTT--GGTCTTTGAAT--T--A-AAA
*
24657325 TCGCAT
428 --AC-T
* * * * * * * * * ***
24657331 CAATT-GGTCTA-AATAGTTTTTCAT-TTTGTAAACAATGTTTGGTCTTTGAA-TTAAAAACTTA
1 TATTTACGT-GAGAATTGTTTCTC-TCTTGGT------T-CTTGGAC---GAACTTCCGAAC-T-
* * * *** * * * *
24657392 TTTACATGAGAATTATTTCTCTCTATCTTTT-TGGCCGAACTTTCGAACTT-GTCAAACTTTTGC
52 TGT-CA--A-ACTT-TTAC-GAGT-TCTTTTAT-----AACTTT-G-A-TTCCTTAAAGTATT-C
* * ** ** ** ** * *
24657455 GAGTTCTTTTATAACTTCG-GTTCCTCAATGTACTC-AAGACTATCCATTCCTTCGA-ACAATTT
101 AAGATAATCCATTCCTTCGAG-----CAAT-TTTTCGAACA-T-TCCA-TGC-TCGAGA-AA---
* *** * ** * * * * **
24657517 TATGAACATCCCATGCTCGTAA-A--ATCTCACTGTTTGATCTAAA-TA-GTTT-GTCATTT-TG
152 T-CG--CATCATTTGGTCTAAATAGTTTGTCA-T-TTTG---TAAACAACTTTTGGTC-TTTAAA
* * * * * ** * *
24657575 TAAAAAACTTTTTGTCTTAAAATTAAAAACTAATTTACGTGAGAATTTTTTGTCTCTTGGTTCTT
208 TTAAAAAC---TTAT-TT-ACA-TGAGAA-TTGTTT-C-------TCTCTTGT-TCTT-------
* *
24657640 GGAGGAACTTCTGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCC-TAAGAGTAT
250 GGACGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTAT
* * *
24657704 TCAAGATAATGCATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTG
314 TCAAGATGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTG
* * * *
24657769 GTCTAAATAGTTTATCATTTTGTAATAAACTTTTTTGTCCTTGAACTAAAAAC-
379 GTCTAAATAGTTTGTCATTTTGTAA-AAAC-TTTTGGTCTTTGAATTAAAAACT
* * * * *
24657822 AATTT-CGTCAGAATTGTTTCTCTCTTGGTTCTTGGTA-GAACTTCCAAACTTGTTATACTTTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAACTTCCGAACTTGTCAAACTTTTA
* * * * *
24657885 TGAGTTCTTTTAGTAA-TTTGGTTTCGTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTT
65 CGAGTTCTTTTA-TAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* * * * * *
24657949 CCAAACATTCCATTCT-AAGGAAATTC-CATCATTTGGTCTAATTAGTTTTTCATTTTGTAAACA
129 TCGAACATTCCATGCTCGA-GAAA-TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * * ** * * * *
24658012 ACTTTTAGCCTTTGAATTAGAAACTTATTTATGTGAGAATTATTTCTCTCTAGGTTCTTAGACAA
192 ACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT-TGTTCTTGGACGA
*
24658077 ACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAG-ATTC---AT
256 ACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAT
* ** * * *
24658138 --TCCA-----TCAACCAATTTTTTGAATATTCCATGCTCGGGAAATCACATCATTTGGTTTAAA
321 GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
** *
24658196 TAGTTCATCATTTTCTAATAAAC-TTT--T-TTTGAATTAAAAAC-
386 TAGTTTGTCATTTTGTAA-AAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * * *
24658237 -ATTTTCGTG-GCAATTGTTTCACTCTTGGTTCTTCG-CAGAACTTCCAAAATTGTTATACTTTC
1 TATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTT
* * * *
24658299 ATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCACTCCTTCGAGCAATTTT
64 ACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* * * *
24658364 TCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTGAACAAA
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * *
24658429 TTTTTGTCTTTAAAGTT-AAATCTTGTTTACGTGAAAATTGTTT-TCATTCTTGGTTCTTTGACG
194 TTTTGGTCTTTAAA-TTAAAAACTTATTTACATGAGAATTGTTTCTC--TCTT-GTTCTTGGACG
* * * *
24658492 AACATT-CGAACTTGTCAAACA-TTAACGAGTTATTTTATAACTTCGATT-CTTGAGAGTGTTCA
255 AAC-TTCCGAACTTGTCAAACATTTAA-GAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCA
* * * *
24658554 AGATGATCCATTCCTAT-GGCCAATTTTCCGAATATTCCATGCTCAGGAAATCACATCATTTGGT
317 AGATGATCCATTCCT-TCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
* * * * * * *
24658618 CTAAATGGTTTGTAATTTTGTAAACAACTTATGGTCTTTAAATTACAGATT
381 CTAAATAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * **
24658669 TATTTCCATGAGAATAGTTTCTCTCTTGGTTCTTGG-CAGAACTTCCGAACTTGTTAAAAATTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTA
* * * * ** *
24658733 CGAGTTCTTTTATAACTTTGGTTACTGAGAGTATTCAAGACGATCCATTCCTTCGACCAA-TTTT
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * * * *
24658797 CTAAACATTCCATGCTTGGGAAATCGCATCA-TTGAGTCTAAATAGTTTTTCATTTTGTAAAAAA
130 C-GAACATTCCATGCTCGAGAAATCGCATCATTTG-GTCTAAATAGTTTGTCATTTTGTAAACAA
** * * * * * * *
24658861 C-TTAAGTTTTTTAATTAAAAACTTATTCACGTCAGAATTGTTTCTCTGTTGGTTCTTGGATGAA
193 CTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGACGAA
* ** * * * *
24658925 TTTCAAAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGTTTCCTTAAAGTATTCAAGATG
257 CTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATG
* * * * ** *** ** *
24658990 ATCCAGTCTTTCGAGCAATTTCCCGAGTATGGAATGCTCGGGAAATCAAACCATTTGGTCTAAAT
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
24659055 AGTTTGTCATTTTGTAAACAACTTTTGATCTTTAAATTAAAAAGT
387 AGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
** * * * * * *
24659100 TATTTAAATAAGAATTGTTTCTCTTTTGCTGCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * *
24659165 GAGTT-TTTTATAACGTTGGTTCCTTAAAGTACTCAAGACAATCCATTCCTTCGAGCAATTTTAT
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT-T
* * * *
24659229 -GAACATTCCATGCTCGAGAAATCGCACCGTTTGCTCTAGATAGTTTGTCATTTTGTAAACAACT
130 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* ** * * * * *
24659293 TTTTGTCTTTAAATTAAAAACAAATTTACGTGAGAATTTTTTGTCTCTTGGTTCTTGGAGGAGCT
195 TTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACT
* * * *
24659358 TCCG----TGTCAAACATTTAAGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGAT
259 TCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * ** **
24659419 GCATTCCTTTGACCAATTTTACGAGCATTCCATGCTCGAAAAATCGCATCATCCGGTCTAAATAG
324 CCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* *
24659484 TTTGTCATTCTGTAATAAACTTTTTTGTCTTTGAATTAAAAA--
389 TTTGTCATTTTGTAA-AAAC-TTTTGGTCTTTGAATTAAAAACT
* * * * *
24659526 -GTTT-CGTTAGAATTGTTTCTCTCTTGGTTCTTGG-CAGAACTTCCAAACTTGTTATACTTTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTA
* * * * * * * ** *
24659588 TGAGTTCTTTTAGAAATTCGGTT-TTGTAATGTATTCAAGACGATCCATTCCTTCAAGCAA-TTT
65 CGAGTTCTTTTATAACTTTGATTCCT-TAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* * * * ** * *
24659651 TCTTAAGATTCCATTCTC-AGGAAATTGCATCATTTGACCTAAATAGTTTTTCTTTTTGTAAACA
129 TC-GAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * ** * * *
24659715 ACTTTTGGCCTTTGAATTAAAAACTTCTTTAGGTGAGAATTGTTTCTCTCTAGGTTCTTGAACAA
192 ACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT-TGTTCTTGGACGA
* **
24659780 ACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCAATTCCTTAAAG-ATTC---AT
256 ACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAT
** * ** *
24659841 --TCCA-----TCGACCAATTTTTTGAACATTCCATGCTTGGGAAATCATATCATTTGGTTTAAA
321 GATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* ** * *
24659899 TCGTTCATCATTTTCTAATAAACTTTCT-ATCTTTGAATTAAAAA--
386 TAGTTTGTCATTTTGTAA-AAACTTT-TGGTCTTTGAATTAAAAACT
* * * * * * * * *
24659943 TATTTTCGTGACAATTATTTCTCTCTTGGTTCTTGG-CAGAACTTTCGAAATCGTTATACTTTCA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTA
* * * * **
24660007 TGAGTTCTTTTAAAACTTCGATTCCTTAAAGTGTTCAAGACGATCCACTT-CTTCGAGCAATTTT
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCA-TTCCTTCGAGCAATTTT
* * * ** *
24660071 CCGAACATTCCATGCTTGGGAAATTACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * * *
24660136 TTTTTGTCTTTAAAGTAAAAACTTGTTTACGTGAGAATTTTTTTCACTCTTACTTCTTGGACGAA
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAA-TTGTTTCTCTCTT-GTTCTTGGACGAA
* * * * *
24660201 CATCCGAACTTGTCAAACA-TTAACGAGTTCTTTTATAACTTCGATT-CTTGAGAGTGTTCAAGG
257 CTTCCGAACTTGTCAAACATTTAA-GAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGA
* * * * *
24660264 TGATCCATTCCTACGACCAATTTTCCAAATATTCCATGCTCAGGAAATCACATCATTTGGTCTAA
320 TGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * ** * * *
24660329 ATGGTTTGTAATTTTGTAAAGAACTTTTCATCTTTAAATTAAATATT
385 ATAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
* * * * ** * * *
24660376 TATTTCCATGAGAATAGTTTCTTTCTTGGTTCTTGGACGAACTTCTAAACTTATTAAACATTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * ** *
24660441 GAGTTCTTTTATAAC-TTCAGTTACTGAGAGTATTCAAGACGATCCATTCCTTCGACCAA-TTTT
66 GAGTTCTTTTATAACTTTGA-TTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* ** * *
24660504 CTAAACATTCCATGCTCGAGAAATCATATCA-TTGAGTCTAAATAGTTTTTCATTTTGTAAAAAA
130 C-GAACATTCCATGCTCGAGAAATCGCATCATTTG-GTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * ** * * *
24660568 CATTAGGTCTTTGAATTAAAAACTGATTCAGGTGGGAATTGTTTCTCTGTTTGTTCTTGGATGAA
193 CTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT-CTTGTTCTTGGACGAA
* * * * * ** *
24660633 TTTCAGAACATGTAAAACTTTTTCGAGTTCTTTTATAACTTCGTTTCCTTAAAGTATTCAAGATG
257 CTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATG
* * * *
24660698 ATCCATTCTTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAACCATTTGGTCTAAAT
322 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* *
24660763 AGTTTGTCATTTTGTAAACAACTTTTGGTAC-TTAAATTAAAAAGT
387 AGTTTGTCATTTTGTAAA-AACTTTTGGT-CTTTGAATTAAAAACT
* ** * * * *
24660808 CATTTAAATAAGAATTGTTTCTCTCTTGCTGCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * * *
24660873 GAGTTCATTTATAA-TGTCGGTTCCTTAAAGTACTCAAGACT-ATCCAATCTTTTGAGCAATTTT
66 GAGTTCTTTTATAACT-TTGATTCCTTAAAGTATTCAAGA-TAATCCATTCCTTCGAGCAATTTT
* * * *
24660936 AT-GAACATTCCATGCTCGGGAAATCGCA-CTGTTTGCTCTAAATAGTTTGTCATTTTGTAAATA
129 -TCGAACATTCCATGCTCGAGAAATCGCATC-ATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * * * * *
24660999 GCTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTTTTTTGTCTCTTGGTTCTTGGAAG
192 ACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAA-TTGTTTCTCTCTT-GTTCTTGGACG
* *
24661064 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGA
255 AACTTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * ** * *
24661129 CGATCCATTCCTTCGACTAATATTATGAACATTCCATGCTCAGGAAATCGCATCATTCGGTCTAA
320 TGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
*
24661194 ATAGTTTGTCATTTTGTAATAAACTTTTTTGTCTTTGAATTAAAAAC-
385 ATAGTTTGTCATTTTGTAA-AAAC-TTTTGGTCTTTGAATTAAAAACT
* * * * *
24661241 AATTT-CGTCAGAATTGTTTCTCTCTTGGTTCTTGG-CAGAACTTCCAAACTTGTTATACTTTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTA
* * * * * * * * * *
24661304 TGAGTTCTTTTAGAAATTCGATTTCGTAAAGTATTGAAGACAATCCATTCATTCGAGCAATTTTC
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * * *
24661369 CGAACATTCCATTCTC-AGGAAATTGCATCATTTGGTCTAAATAGTTTTTGATTTTGTAAACAAC
130 CGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* ** * * * *
24661433 TTTTGGCCTTCGAATTAAAAAATTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACAAAC
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT-TGTTCTTGGACGAAC
* * * *
24661498 TTCCAAACTTGTCCAACATTTAAGAGTTGTTTTATAACTTTGGTTCCTTAAAG-ATTC---AT--
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
** * * *
24661557 TCCA-----TCGACCAATTTTTTGAATATTCGAT-CTCGGGAAATCACATCATTTGGT-TAAAAT
323 TCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAAT
** ** *
24661615 AGTTCATCATTTTGTAACAAACTTTTTCTATTTGAATTAAAAAC-
387 AGTTTGTCATTTTGTAA-AAACTTTTGGTCTTTGAATTAAAAACT
* * ** * * * * *
24661659 -ATTTTCATGTCAATTGTTTCTCTCTTGGTTCTTGGTA-AAACTTCTGAAATTGTTATA-TTTTC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAACTTCCGAACTTGTCAAACTTTT-
* *
24661721 ATGAGTTCTTTT-T-A---T-A--AC-T----T-TT----AT--TCC--T--TT-GAGCAATTTT
64 ACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* * * * * *
24661761 TCTAGCATTCCATGCCCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTTATTTTGTAAACAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * *
24661826 TTTTTGTCTTTAAAGTT-AAAACTTGTTTACATGAAAATTGTTTTCACTCTTGGTTCTTGGACGA
194 TTTTGGTCTTTAAA-TTAAAAACTTATTTACATGAGAATTG-TTTCTCTCTT-GTTCTTGGACGA
* * * *
24661890 ACATCCGAACTTGTCAAACA-TTAACGAGTTCTTTTATAACTTCGATT-CTTGAGAGTGTTCAAG
256 ACTTCCGAACTTGTCAAACATTTAA-GAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAG
* * * * *
24661953 ATGATCCATT-CTTACGACCAATTTTTCGAATATTCCATGCCCGGGAAATCACATCATTTGGACT
319 ATGATCCATTCCTT-CGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT
* * * * * *
24662017 AAATGGTTTG-CAATTTTGTAACAACATTTGGTCTTTAAATTAAAGATT
383 AAATAGTTTGTC-ATTTTGTAAAAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * *
24662065 TATTTCCATGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTTAAACATTTAG
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * ** * * *
24662130 GAGTTCTTTTATAACTTCGATTACTGAGAGTATTTAAGACGATCCATTCCTTTGACCGA-TTTTC
66 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTTC
* * * * *
24662194 TAAACATTCCATGCTCGGGAAATCGCATCA-GTGAGTCTAAATAGTTTTTCATTTTGTAAAAAAC
131 -GAACATTCCATGCTCGAGAAATCGCATCATTTG-GTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * * * *
24662258 TTTAGGTCTTTGAATTAAAAACTGATTCACGTGAGAATTGTTTCTCTGTTGGTTCTTGGATGAAA
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGACGAAC
* * * * * *
24662323 TTCAGAACTTGTAAAACTTTTATGAGTTCTTTTGTAACTTCGTTTCCTTAAAGTATTCAAGATGA
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * * * * *
24662388 TCCATTCTTTCGAGCAATTTTTCGAATATTCCATGCTCGGGAAATC-AAACTATTTGGTCTAAAT
323 TCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATC-ATTTGGTCTAAAT
* * *
24662452 AGTTTGTCATTTTGTAAACAACTTTTGGCCTTTAAATTAAAAAGT
387 AGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACT
** * * * * *
24662497 TA-TTAAATAAGAATTGTTTCTCTCTTGCTGCTTGGTCGAACTTTCGAACTTGTCAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* ** * * *
24662561 GAGTTCTTTTATAAC-TTCAGTTCCTTAAAGTCCTCAAGATTATCCATTCCTTCAAGTAATTTTA
66 GAGTTCTTTTATAACTTTGA-TTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT-
* * *
24662625 T-GAACATTCCATGCTCGGGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTGTAAACAAC
129 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* ** * * * * * * *
24662689 TTTTTGTCAATAAACTAAAAACTAATTTACGTGAGAATTTTTTGTCTATTGGTTCTTGGAAGAAC
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGACGAAC
** * * *
24662754 TTAGGAACTTGTCAAACATTTAAGAGTT-TTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGA
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * * * * *
24662818 TGCATTCCTTTGACCAATTTTACGAACTTTCCGTGCTCGGGAAATCGCATCATTCGGTCTAAATA
323 TCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
** *
24662883 GTTTGTCATTTTGTAATAAACTTTTTTTTCTTTAAATTAAAAAC-
388 GTTTGTCATTTTGTAA-AAAC-TTTTGGTCTTTGAATTAAAAACT
* * * * * * * * * * *
24662927 AAATT-CATCAGAATTTTTTCTTTCTTGGTTCTTGG-CATAACTTCCAAACTTGTTATACATTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTA
* * * * * * * * * * *
24662990 TGAGTTCTTTTAGAAATTCGGTTTCGTAAAGTATTTAAGACAATCCATTCATTCGAGCAATTTTC
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* * * * * *
24663055 CGAGCATTCCATTCT-AAGGAAATTGCATCATTTGGTCTATATAGTTTTTCATTTTGTAAACAAC
130 CGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * ** * * *
24663119 TTTTGGCCTTTGAATTAAAAACTTAGTTACATGAGAATTGTTTCAATCTAGGTTCTTGGGCAAAC
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT-TGTTCTTGGACGAAC
*
24663184 TTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAG-ATT-AA-AT--
258 TTCCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * * * * *
24663244 TCCA-----TCGACCAATTTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTTTTAAGA
323 TCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
** * *** * *
24663304 GTTCATCATTTTCTAAAAAAAAATT-ATCTTTAAATTAAAAAC-
388 GTTTGTCATTTTGT-AAAAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * *
24663346 -ATTTTCGTGACAA---TTTCTCTCTTGGTTCTTAGTA-GAACTTCCGAAATTGTTATACTTTCA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * ** *
24663406 TGAGTTTTTTTATATCTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTT
65 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* *
24663470 CTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTGTGTCATTTTGTAAACAAC
130 C-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * *
24663535 TTTTTGTCTTTAAAGTAAAAACTTGTTTACGTGAGAATTGTTTTCACTCTTGGTTCTTGGACGAG
194 TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTG-TTTCTCTCTT-GTTCTTGGACGAA
* * * *
24663600 CATCCGAACTTGTCAAACA-TTAACGAGTTCTTTTATAACTTCGATT-CTTGAGAGTGTTCAAGA
257 CTTCCGAACTTGTCAAACATTTAA-GAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGA
* * ** ** *
24663663 TGATCAATTCCTACGAATAATTTTTTGAACATTCCATGCTTGGGAAATC
320 TGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATC
24663712 ACATTGTTGA
Statistics
Matches: 20555, Mismatches: 4437, Indels: 3054
0.73 0.16 0.11
Matches are distributed among these distances:
388 4 0.00
390 3 0.00
391 4 0.00
392 11 0.00
393 118 0.01
394 93 0.00
395 23 0.00
396 22 0.00
397 34 0.00
398 17 0.00
399 9 0.00
400 13 0.00
401 3 0.00
402 4 0.00
403 6 0.00
404 4 0.00
405 43 0.00
406 41 0.00
407 62 0.00
408 10 0.00
409 5 0.00
410 10 0.00
411 13 0.00
412 49 0.00
413 62 0.00
414 16 0.00
415 337 0.02
416 334 0.02
417 100 0.00
418 153 0.01
419 256 0.01
420 165 0.01
421 67 0.00
422 14 0.00
423 64 0.00
424 979 0.05
425 215 0.01
426 238 0.01
427 222 0.01
428 314 0.02
429 631 0.03
430 2408 0.12
431 3548 0.17
432 4331 0.21
433 1551 0.08
434 1235 0.06
435 309 0.02
436 34 0.00
437 22 0.00
438 60 0.00
439 41 0.00
440 44 0.00
441 41 0.00
442 46 0.00
443 158 0.01
444 23 0.00
445 20 0.00
446 38 0.00
447 24 0.00
448 16 0.00
449 21 0.00
450 25 0.00
451 33 0.00
452 47 0.00
453 28 0.00
454 30 0.00
455 12 0.00
456 38 0.00
457 19 0.00
458 33 0.00
459 46 0.00
460 24 0.00
461 35 0.00
462 30 0.00
463 17 0.00
464 4 0.00
465 9 0.00
466 17 0.00
467 18 0.00
468 26 0.00
469 26 0.00
470 21 0.00
471 23 0.00
472 16 0.00
473 15 0.00
474 4 0.00
475 10 0.00
476 13 0.00
477 9 0.00
478 14 0.00
479 10 0.00
480 5 0.00
481 14 0.00
482 16 0.00
483 17 0.00
484 27 0.00
485 21 0.00
486 15 0.00
487 15 0.00
488 9 0.00
489 15 0.00
490 27 0.00
491 37 0.00
492 21 0.00
493 30 0.00
494 22 0.00
495 16 0.00
496 21 0.00
497 21 0.00
498 14 0.00
499 15 0.00
500 30 0.00
501 42 0.00
502 36 0.00
503 32 0.00
504 28 0.00
505 42 0.00
506 22 0.00
507 20 0.00
508 17 0.00
509 30 0.00
510 16 0.00
511 12 0.00
512 22 0.00
513 14 0.00
514 18 0.00
515 22 0.00
516 30 0.00
517 14 0.00
518 6 0.00
519 4 0.00
520 13 0.00
521 32 0.00
522 56 0.00
523 52 0.00
524 12 0.00
525 9 0.00
526 7 0.00
527 4 0.00
528 3 0.00
529 5 0.00
530 3 0.00
531 6 0.00
532 4 0.00
533 11 0.00
534 6 0.00
535 14 0.00
536 14 0.00
537 16 0.00
538 11 0.00
539 9 0.00
540 1 0.00
541 2 0.00
542 6 0.00
543 3 0.00
544 6 0.00
545 19 0.00
546 5 0.00
547 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (430 bp):
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTTC
GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
TTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTC
CGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCC
ATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
TGTCATTTTGTAAAAACTTTTGGTCTTTGAATTAAAAACT
Found at i:24638784 original size:647 final size:645
Alignment explanation
Indices: 24636764--24639847 Score: 3053
Period size: 647 Copynumber: 4.8 Consensus size: 645
24636754 ATCGGGTCCC
* * * *
24636764 TATTTACGTTAGAATTGTTTCTCTCTTGGTTTTTGAATGAAC-TTCTGAACTTGTCAAACATTTA
1 TATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGAACGAACTTTC-GAACTTGTCAAACATTTA
* * * * ** * * **
24636828 CTAGTTCTTTTCTAACTTTGGTTCCTTAAAGTATTAAGACAATCCATTTCGTCGAGAAATTTTTT
65 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATCAAGATGATCCATTCCGTCGACAAATTTTCC
* * * * *
24636893 GAACATTCCATGCTCAGGAAATGGCATCATTTGGTCTAAACAGTTTTTCATTTTGTAAACAACGT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * *
24636958 TTGGTCTTTAAATTAAAAACATATTTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACT
195 TTTGTCTTTGAATTAAAAAC-TAATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACT
* * *
24637023 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
259 TCTGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * * *
24637088 GCATTCCTTCGAGCAATTTTCAGAACATTACAT-CTTGGGACATCGCATCATTTGGTCTAAATAG
324 TCATTCCTTCGAGCAATTTAC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* * *
24637152 TTTGTCATTTTATAAACAACTTTTTGTCTTTAAAGTAAAAACTTATTTACGTGAGAATTTGTTTC
388 TTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAAC-TATTTACGTGAGAA-TTGTTTC
* * * * *
24637217 ACTCTTGGTTCTTAGACGAACATCCGAACTTCTCAAAC-TTAATGAGTTCTTTTATAACTTTGAT
451 TCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACATTAATGAGTTCTTTTATAACTTCGAT
* * ** * *
24637281 TCTTGAGAGTGTTCAAGATGATCCATTCCAACGACCAATTTTTCGAACATTCCATCCTCGAGAAA
516 TCTTGAAAGTATTCAAGAAAATCCATTCCTACGACCAATTTTTCGAACATTCCATGCTCGAGAAA
* **** * *
24637346 TCACATAATTTGGTCTAAATAGTTTGT-AAAAAGTAAACAACATTTGGTCTTTAAATTAAATATT
581 TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAATT
* * *
24637410 TATTTCCATGAGAATTGTTTCTCTCTTA-GTTCTTGGACGAACTTTCGAACTTGTCAAACATTTA
1 TATTTACGTGAGAATTGTTTCTCTC-TAGGTTCTTGAACGAACTTTCGAACTTGTCAAACATTTA
* * * * * *
24637474 CGAGTTCTTTTCTAACTTTGGTTCCTTAAAGCATTCAAGATGATCCATTTCGTCGAGAAATTTAC
65 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TCAAGATGATCCATTCCGTCGACAAATTTTC
* * *
24637539 CGAACATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACA
129 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * * * * ** *
24637604 TTTGGTCTTTGACTTAAAAACTTATTTACATCAAAATTGTCTCTCTCTTACTTCTTGTCCGAATT
194 TTTTGTCTTTGAATTAAAAACTAATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACT
* * * * * * * * *
24637669 TCTGAGCTTGCCAAACTTTTACGTGTTCTTTTATAATTTCAGTTCCTTAAAGTACTCAAGACTAT
259 TCTGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * *
24637734 ATCCATTCCTTTGAGCAATTTTTA-GAACATTCCATGCTTGGGAAATCGAAGCATTTGGTCTAAA
324 -T-CATTCCTTCGAGCAA--TTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * * ** *
24637798 TAATTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGGT
385 TAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAA-CTATTTACGTGAGAATTGTT
* ** * * * * * *
24637863 TCTCCCTTCCTTCTTGGCCGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAATTTCG
449 TCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACATTAATGAGTTCTTTTATAACTTCG
* * * * * ** * *
24637928 GTTCCTAAAAGTACTCAAGATGAA-CCATTCCTTTGAGCAATTTTTCGGACATTCCATGCTCGAG
514 ATTCTTGAAAGTATTCAAGA-AAATCCATTCCTACGACCAATTTTTCGAACATTCCATGCTCGAG
* * *
24637992 AAATCGCACCATTTGGT-TAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCGTTAAATTAAA
578 AAATCACATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAA
*
24638056 AAGT
642 AATT
** * * * * * * *
24638060 TATTTAAATGAGAATTGTTTCTCTATTGCTTCTTTACCGAACTTTTGAACTTGTCAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGAACGAACTTTCGAACTTGTCAAACATTTAC
* * *
24638125 GAGTTCTTTTATAACTTCAGTTCCTTAAAGTACTCAAGATTATCCATTCCTTCGACAAATTTTCC
66 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TCAAGATGATCCATTCCGTCGACAAATTTTCC
* * * * *
24638190 AAACATTCCATGC-CTGAGAAATCGCACCATTTGCTCTAAATAGTTTATCATTTTGTAAACAACT
130 GAACATTCCATGCTC-GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
** * * * *
24638254 TTTTGTCTTAAAATTAAAAACTAATTTACGTGAGAATTTTTTGTCTCTTGCTTCTTGGACAAACT
194 TTTTGTCTTTGAATTAAAAACTAATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACT
* * * *
24638319 TCTGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGCT
259 TCTGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * * *
24638384 TCATTCCTTCGACCAACTTTACGAACATCCCATGCTGGGGAAATCGCATCATTCGGGCTAAATAG
324 TCATTCCTTCGAGCAA-TTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* * * *
24638449 TTTCTTATTTTGTAATA-AACTTTTTTGTCTTTGAATTAAAAAC-ATTTTCGCT-AGAATTATTT
388 TTTGTCATTTTGTAA-ACAAC-TTTTTGTCTTTGAATTAAAAACTATTTACG-TGAGAATTGTTT
* * * * * * *
24638511 CTCTCTTGGTTCTTGGTA-GGACTTCCAAACTTGTTATAC-TTCTATGAGTTCTTTTAGAAATTC
450 CTCTCTTGGTTCTTGG-ACGAACATCCAAACTTGTCAAACATT-AATGAGTTCTTTTATAACTTC
* ** * * * *
24638574 GATTC-CGTAAAGTATTCAAGAAAATCCATTCCTTTGAGCAATTTCTCAAACATTCCATTCTC-A
513 GATTCTTG-AAAGTATTCAAGAAAATCCATTCCTACGACCAATTTTTCGAACATTCCATGCTCGA
** * *
24638637 GGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACTTTTGG-CTTTTGAATTA
577 -GAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC-TTTAAATTA
*
24638701 AAAACT
640 AAAATT
* * * * * * *
24638707 TATTTACGTGAGAATTGTTTCTCTCAAGGTTCTTGAATGAAGTTGCAAACTTGGCAAACATTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGAACGAACTTTCGAACTTGTCAAACATTTAC
* * ** * *
24638772 GAGTTATTTTATAACTTCGGTTCCTTAAATTATTCAAGATGATCCATTCTATTGACAAATTTTCT
66 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TCAAGATGATCCATTCCGTCGACAAATTTTCC
* * * * * * *
24638837 AAACACTCCATGCTCGGGAAATCACATCATTTGGTTTAAATAGTTCGTCATTTTCTAATA-AATT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAACT
* * * * *
24638901 TTTTATCTTTGAATTAAAAAC--ATTTTCGTGACAATTGTTTCTCTCTTGGTTCTTGG-CAGAAC
194 TTTTGTCTTTGAATTAAAAACTAATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGAC-GAAC
* * * * * **
24638963 TTCCGAAGTTGTTATAC-TTTCATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATA
258 TTCTGAACTTGTCAAACATTT-AAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * *
24639027 ATTCATTCCTTCGAGCAATTTCCAGAACATTCTATGCTCGGGAAATTGCATCATTTTGTCTAAAT
322 ATTCATTCCTTCGAGCAATTTAC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * *
24639092 AGTTAT-TCATTTTGTAAACAACTTTTTGTCTTTAAAGTAGAAACTTATTTACGTGCGAATTGTT
386 AGTT-TGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAAC-TATTTACGTGAGAATTG-T
*
24639156 TTCACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACATTAATGAGTTCTTTTATAACTTC
448 TTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACATTAATGAGTTCTTTTATAACTTC
* * * * * *
24639221 GATTCTTGAGAGTGTTCAA-AATGATCCATTTCTACGACCAATTTTCCGAACATCCCATGCTCGA
513 GATTCTTGAAAGTATTCAAGAA-AATCCATTCCTACGACCAATTTTTCGAACATTCCATGCTCGA
* * * *
24639285 GAAATCACATCATTTGGTCTAAATAGTTTTTTTAATTTTGTAAATAACTTTTAGTCTTTAAATTA
577 GAAATCACATCATTTGGTCTAAATAG--TTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTA
24639350 AAAATT
640 AAAATT
* * * * *
24639356 TATTTCCGTGAGAATAGTTTCTCTCTTA-GTTCTTGGACGAACTTTCGAACTTTTTAAACATTTA
1 TATTTACGTGAGAATTGTTTCTCTC-TAGGTTCTTGAACGAACTTTCGAACTTGTCAAACATTTA
* ** *
24639420 CGAGTTCTTTTATAACTTCGG-----T----TA-C--GA-GTTCC--TCC-AAG-C-AATTTTTC
65 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATCAAGATGATCCATTCCGTCGACAAATTTTCC
* * * *
24639467 GAATATTCCATGCTCGGGAAATCGCATCATTTGGTTTTAATAGTTTGTCATTTTGTAAAAAAC-T
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * * *
24639531 TTTGATCTTTGAATTAAAAACTTATTT-CTTTGAGAATTGTTTCCCACTTGGTTTTTGAACGAAC
195 TTTG-TCTTTGAATTAAAAACTAATTTAC-ATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAAC
* * * * *
24639595 TTCTAAACTTGTCAGACATTTAAGAGTTCTTTCATAACTTCGATTTC-TAAGAGTATTCAAGACG
258 TTCTGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGACG
* * * * * * *
24639659 ATCCATTCCTTCGACCAATTTTTCGAAAATTTCATTCTCGGGAAATTGCATCATTTGGTCTAAAT
322 ATTCATTCCTTCGAGCAA-TTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
24639724 AGTTTGTCATTTTGTAATA-AACTTTTGGTCTTTGAATTGAAAACTTATTTACGTCAGAATTGTT
386 AGTTTGTCATTTTGTAA-ACAACTTTTTGTCTTTGAATTAAAAAC-TATTTACGTGAGAATTGTT
* * * * * * *
24639788 TCTCTCTT-GTCCTTGGACGAACTTTCGAACTGGTCAAA-ATTTTACGAGTTCTTTTATAAC
449 TCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACA-TTAATGAGTTCTTTTATAAC
24639848 ATCAGTTCCC
Statistics
Matches: 2020, Mismatches: 360, Indels: 132
0.80 0.14 0.05
Matches are distributed among these distances:
629 6 0.00
630 118 0.06
631 15 0.01
632 180 0.09
633 11 0.01
635 4 0.00
636 2 0.00
638 1 0.00
640 2 0.00
644 29 0.01
645 151 0.07
646 196 0.10
647 574 0.28
648 134 0.07
649 298 0.15
650 299 0.15
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (645 bp):
TATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGAACGAACTTTCGAACTTGTCAAACATTTAC
GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATCAAGATGATCCATTCCGTCGACAAATTTTCCG
AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
TTGTCTTTGAATTAAAAACTAATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTC
TGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATTC
ATTCCTTCGAGCAATTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
GTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTATTTACGTGAGAATTGTTTCTCTCT
TGGTTCTTGGACGAACATCCAAACTTGTCAAACATTAATGAGTTCTTTTATAACTTCGATTCTTG
AAAGTATTCAAGAAAATCCATTCCTACGACCAATTTTTCGAACATTCCATGCTCGAGAAATCACA
TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAATT
Found at i:24639946 original size:90 final size:89
Alignment explanation
Indices: 24639769--24639937 Score: 214
Period size: 90 Copynumber: 1.9 Consensus size: 89
24639759 ATTGAAAACT
* * * *
24639769 TATTTACGTCAGAATTGTTTCTCTCTTGTCCTTGGACGAACTTTCGAACTGGTCAAAATTTTACG
1 TATTTACGTCAGAATTCTTTCTCTCTTGTCCTTGGACGAACTTCCGAACTGATCAAAATTATACG
*
24639834 AGTTCTTTTATAACATCAGTTCCC
66 AGTTCATTTATAACATCAGTTCCC
* * * *
24639858 TATTTACGTTAGAATTCTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTATCAAACA-TATA
1 TATTTACGTCAGAATTCTTTCTCTCTT-GTCCTTGGACGAACTTCCGAACTGATCAAA-ATTATA
* *
24639922 CGATTTCATTTCTAAC
64 CGAGTTCATTTATAAC
24639938 TTTGGTTCCT
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
89 25 0.37
90 41 0.61
91 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (89 bp):
TATTTACGTCAGAATTCTTTCTCTCTTGTCCTTGGACGAACTTCCGAACTGATCAAAATTATACG
AGTTCATTTATAACATCAGTTCCC
Done.