Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 81 of 126
Found at i:24640188 original size:98 final size:98
Alignment explanation
Indices: 24640015--24640203 Score: 270
Period size: 98 Copynumber: 1.9 Consensus size: 98
24640005 GAAATTGCAT
* * * *
24640015 CATTTGGTCTAAATAGTTTTTCATATTGTAAACAACCTTTGGTCTTTGAATTCAAAACTTATTTA
1 CATTTGGTCTAAATAGTTTGTCATATTGTAAAAAACCTTTGGTCTTTAAATTAAAAACTTATTTA
* * * *
24640080 CATGAGAATTGTTTCTCTCTTGCTTCTTCGCAC
66 AATGACAATTGTTCCACTCTTGCTTCTTCGCAC
* * * *
24640113 CATTTGGTCTCAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTAAATTAAAAAGTTATTTA
1 CATTTGGTCTAAATAGTTTGTCATATTGTAAAAAACCTTTGGTCTTTAAATTAAAAACTTATTTA
24640178 AATGACAATTGTTCCACTCTTGCTTC
66 AATGACAATTGTTCCACTCTTGCTTC
24640204 CTGGTCGAAC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
98 79 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (98 bp):
CATTTGGTCTAAATAGTTTGTCATATTGTAAAAAACCTTTGGTCTTTAAATTAAAAACTTATTTA
AATGACAATTGTTCCACTCTTGCTTCTTCGCAC
Found at i:24640500 original size:216 final size:214
Alignment explanation
Indices: 24640107--24642628 Score: 2338
Period size: 216 Copynumber: 11.7 Consensus size: 214
24640097 TCTTGCTTCT
* * *
24640107 TCGCACCATTTGGTCTCAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTAAATTAAAAAGT
1 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAAAACTTTT-GTCTTTAAATTAAAAACT
** * * * * * * ** *
24640172 TATTTAAATGACAATTGTTCCACTCTTGCTTCCTGGTCGAACTTCCGAACTTGTCAAATTTTTAT
64 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAA
** *
24640237 GAGTTCTTTTATAACTTTAGTTCCTGAAAGTACTCAAGACT-ATCCATTCCTTCGACCAATTTTT
129 GAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGA-TGATCCATTCCTTCGACCAATTTTT
*
24640301 CGAACATTCCATGGTCGGGAAA
193 CGAACATTCCATGCTCGGGAAA
* * *
24640323 TCACACCATTTGCTCTAAATAGTTTGTCATTTTGTAAACAACATTTTGTCTTTAAATTAAAAACT
1 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAC-TTTTGTCTTTAAATTAAAAACT
* * * *
24640388 AATTTACGTGAGAATTTTTTGTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTAA
64 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAA
* * * * *
24640453 GAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTCAAGATGATCCATTCCCTCGACCAACTTTAC
129 GAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTC
*
24640518 GAACATTCCATGCTTGGGAAA
194 GAACATTCCATGCTCGGGAAA
* ** * *
24640539 TCACATCATTCCGTCTAAATAGTTTATCATTTTGTAATAAACTTTTTTGTCTTTGAATTAAAAAC
1 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-AAAC--TTTTGTCTTTAAATTAAAAAC
* * * * * * * *
24640604 --ATTTTCGTTAGAATTGTTTTCTCTCTTAGTTCTTGG-CAGAACTTTCAAACTTGTTATACTTT
63 TTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACATT
* * * * ** *
24640666 TATGAGTTCTTTTAGAAATTCGGTT-CTGTACAA-TATTCAAGACGATCCATTCCTTTAAGCAAT
126 TAAGAGTTCTTTTATAACTTCGGTTCCTG-A-AAGTATTCAAGATGATCCATTCCTTCGACCAAT
* *
24640729 TTTTCGAACATTCCATTCCCGGGAAA
189 TTTTCGAACATTCCATGCTCGGGAAA
* * * * *
24640755 TTGCATCATTTGGTCCAAATAGTTTGTCATTTTGTACATAACTTTTGGCCTTTGAATTAAAAACT
1 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AAAACTTTT-GTCTTTAAATTAAAAACT
** * *
24640820 TATTTACGTGAGAATTGTTTCTCTCAAGGTTCTTGGATGAACTAT-CAAACTTGTCAAACATTTA
64 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAACATTTA
* * * * * * * * *
24640884 AGAGCTCTTTTATTACTTCGATTCCTTAAAGCATTCAAGATGATCAATCCCTTGGACCAATTTTC
128 AGAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCCTTCGACCAATTTTT
* *
24640949 CAAACATTCCATGCTCGAGAAA
193 CGAACATTCCATGCTCGGGAAA
* * * * * * *
24640971 TCACATCATTTGGTTTAAATAGTTCGTCATTTTCTAATAAACTTTTTATCTTTGAATTAAAAA-A
1 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-AAAC-TTTTGTCTTTAAATTAAAAACT
* * * * * * * * *
24641035 AATTT-CGTGACAATCGTTTCTATCTTGGTTCTTAG-CAGAACTTCCAAAATTGTTATAC-TTTC
64 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACATTT-
* * * * * **
24641097 ATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCTAGAAATTTT
127 AAGAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCCTTCGACCAATTTT
* * *
24641162 TAGAACATTCCATGCTCTGTAAA
192 TCGAACATTCCATGCTCGGGAAA
*
24641185 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAAGTAAAAACT
1 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAC-TTTTGTCTTTAAATTAAAAACT
** ** * * * * *
24641250 TATGCACACGAGAATTGTTTTCACTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACGTTGA
64 TATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTA
* * * * * * ** *
24641315 TGAGTTCTTTTATAACTTTGATT-CTTAAGAGTGTTCAACATGATCCATTCCAACAACCAATTTT
128 AGAGTTCTTTTATAACTTCGGTTCCTGAA-AGTATTCAAGATGATCCATTCCTTCGACCAATTTT
* *
24641379 CCGAACATCCCATGCTCGGGAAA
192 TCGAACATTCCATGCTCGGGAAA
* * * * * * *
24641402 TCACATCATTTGGTTTAAATAGTTCGACATTTTCTAATAAACTTTTTATCTTTGAATTAAAAAC-
1 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-AAAC-TTTTGTCTTTAAATTAAAAACT
* * * * *
24641466 -ATTTTCGCGACAATTGTTTCTCTCTTGGTTCTTGG-CAGAACTTCCGAAATTGTTAAAC-TTTC
64 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACATTT-
* * * * * * *
24641528 ATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-TAG--GACTCAATTCCTTCAAGCAATTT
127 AAGAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGA-TCCATTCCTTCGACCAATTT
*
24641590 TTCGAGCATTCCATGCTCGGGAAA
191 TTCGAACATTCCATGCTCGGGAAA
* * *
24641614 TCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGACTTTAAAGTAAAAACTT
1 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AACTTTTGTCTTTAAATTAAAAACTT
* * * * *
24641679 ATTTACATGGGAATTGTTTTCACTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAACA-TTAA
65 ATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAA
* * * * * *
24641743 CGAGTTCTTTTATAACTTCGATTCTTGAGAGTGTTCAAGATGATCCATTCCTACGACTAATTTTT
129 -GAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCCTTCGACCAATTTTT
* *
24641808 CAAATATTCCATGCTCGGGAAA
193 CGAACATTCCATGCTCGGGAAA
* * * * * * *
24641830 TCACATCATTTGGTCTAAATGGTTTGTAATTTTGTAAACAAGTTTTGGTCCTTAAATTAAAGATT
1 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AACTTTT-GTCTTTAAATTAAAAACT
* * * * * *
24641895 TATTTCCGTGAGAATAGTTTTTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTTAAACATTTAC
64 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTA-
* * * * *
24641960 A-AGTTCTCTTATAACTTCGGTTACT-AAGAGTATTCAAGACGTTTCATTCCTTCGACCAAATTT
128 AGAGTTCTTTTATAACTTCGGTTCCTGAA-AGTATTCAAGATGATCCATTCCTTCGACC-AATTT
*
24642023 CTT--AAAATTCCATGCTCGGGAAA
191 -TTCGAACATTCCATGCTCGGGAAA
* * ** *
24642046 TCGCATCA-TTGAGTCTAAATAGTTTTTAATTTTGTAAAAAACATTTCATCTTTGAATTAAAAAC
1 TCGCATCATTTG-GTCTAAATAGTTTGTCATTTTGT-AAAAAC-TTTTGTCTTTAAATTAAAAAC
* * * * * * * *
24642110 TGATTCACATGAGAATTTTTTCTCTCTTGGTTCTTAGATGAA-TATCAGAACTTGTAAAAC-TGT
63 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAACAT-T
* * * * ** *
24642173 TACGAGTTCTTTTATAACTTCGGCTCCTTAAAGTATTAAAGGCGATCCATTCCTTCGAGCAATTT
126 TAAGAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCCTTCGACCAATTT
* * *
24642238 TTTGAAAATTCAATGCTCGGGAAA
191 TTCGAACATTCCATGCTCGGGAAA
* * * *
24642262 TTGCATCATTTGGTTTTAATAGTTTGTCATTTTGTAAAAAACTTTTCGTCCTTAAATTAAAAACT
1 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAAAACTTTT-GTCTTTAAATTAAAAACT
** * * * * * *
24642327 TATTTATTTGAGAATTGTTTCTCACTTGCTTTTTGAACGAACTTCCAAACTTATCAAACATTTAA
64 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAA
* * *
24642392 GAGTTCTTTCATAACTTC-GTTTCTTAAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTT
129 GAGTTCTTTTATAACTTCGGTTCCTGAA-AGTATTCAAGATGATCCATTCCTTCGACCAATTTTT
* *
24642456 CGAACATTTCATTC-CGGGAAA
193 CGAACATTCCATGCTCGGGAAA
* * * * * * *
24642477 TTGCATCATTTGGTCTAAATAGTTTGTTATTTTGTATTAAACTTTGGTATTTGAATTAAAAAGTT
1 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AAAACTTTTGTCTTTAAATTAAAAACTT
* * *
24642542 ATTTACGTTAGAATTGATTCTCTCTT-GTTCTTGTACGAACTTCCGAA-TTGGTCAAA-ATTTTA
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT-GTCAAACA-TTTA
*
24642604 CA-AGTTCTTTTATAACATCGGTTCC
128 -AGAGTTCTTTTATAACTTCGGTTCC
24642629 CTATTTACGT
Statistics
Matches: 1875, Mismatches: 362, Indels: 140
0.79 0.15 0.06
Matches are distributed among these distances:
211 20 0.01
212 74 0.04
213 62 0.03
214 341 0.18
215 132 0.07
216 991 0.53
217 248 0.13
218 7 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (214 bp):
TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAACTTTTGTCTTTAAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAAGA
GTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGA
ACATTCCATGCTCGGGAAA
Found at i:24642700 original size:90 final size:89
Alignment explanation
Indices: 24642541--24642718 Score: 247
Period size: 90 Copynumber: 2.0 Consensus size: 89
24642531 ATTAAAAAGT
* *
24642541 TATTTACGTTAGAATTGATTCTCTCTTGTTCTTGTACGAACTTCCGAATTGGTCAAAATTTTACA
1 TATTTACGTGAGAATTGATTATCTCTTGTTCTTGTACGAACTTCCGAATTGGTCAAAATTTTACA
*
24642606 AGTTCTTTTATAACATCGGTTCCC
66 AGTTCTTCTATAACATCGGTTCCC
*
24642630 TATTTACGTGAGAATTTATTATCTCTTGTTTCTTAG-ACGAACTTCCGAACTT-GTCAAACA-TT
1 TATTTACGTGAGAATTGATTATCTCTTG-TTCTT-GTACGAACTTCCGAA-TTGGTCAAA-ATTT
24642692 TA-AGAGTTCTTCTATAACATCGGTTCC
62 TACA-AGTTCTTCTATAACATCGGTTCC
24642719 TGAGAGTATT
Statistics
Matches: 80, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
89 26 0.32
90 50 0.62
91 4 0.05
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (89 bp):
TATTTACGTGAGAATTGATTATCTCTTGTTCTTGTACGAACTTCCGAATTGGTCAAAATTTTACA
AGTTCTTCTATAACATCGGTTCCC
Found at i:24643076 original size:217 final size:214
Alignment explanation
Indices: 24642638--24643383 Score: 924
Period size: 216 Copynumber: 3.5 Consensus size: 214
24642628 CCTATTTACG
* * * * *
24642638 TGAGAATT-TATTATCTCTTGTTTCTTAGACGAACTTCCGAACTTGTCAAACATTTAAGAGTTCT
1 TGAGAATTGT-TTCTCTCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAAGAGTTCT
* * * * * ** * * *
24642702 TCTATAACATCGGTTCCTGAGAGTATTCAAGACGAT-CCATTCCTTCAACCAATTTTACAAACAT
65 TTTATAACTTCGGTTCCTTAAAGTACTCAAGAC-ATATTATTCCTTCGAGCAATTTT-CGAACAT
* * * * *
24642766 TCCATGCTCGAGAGATCACGT-CATTTGGTCTAAATAGTTTTTCATTTTGTCAACAACGTTTAGT
128 TCCATGCTCG-GAAATCAC-TCCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* * *
24642830 CTTTGAATTAAAAACTTATTTACA
191 CTTTAAATTAAAAAGTTATTTAAA
* * *
24642854 TGAGAATTGTTTCTCTCTAGCTTCTTGGCCGGACTTCCAAACTTGTCAAACTTTTAAGAGTTCTT
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAAGAGTTCTT
*
24642919 TTATAACTTCGGTTCCTTAGAGTACTCAAGACTATATTGATTCCTTCGAGCAATTTTCTGAACAT
66 TTATAACTTCGGTTCCTTAAAGTACTCAAGAC-ATATT-ATTCCTTCGAGCAATTTTC-GAACAT
*
24642984 TCCATGCTCGGAAATCGCTCCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
128 TCCATGCTCGGAAATCACTCCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
*
24643049 TTCAATTAAAAAGTTATTTAAA
193 TTAAATTAAAAAGTTATTTAAA
* * * *
24643071 TGAGAATTGTTTCTCCCTTGCTTCTTGGCTGAACTTTCGAACTTGTCAAACATTTT-CGAGTTCT
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAAC-TTTTAAGAGTTCT
* * *
24643135 TTTATAACTTCGGTTCCTTAAAGTACTCAAGTCAAACTATTCCTTCGAGCAATTTTCCGAACATT
65 TTTATAACTTCGGTTCCTTAAAGTACTCAAGACATATTATTCCTTCGAGCAATTTT-CGAACATT
* * *
24643200 CCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
129 CCATGCTC-GGAAATCACTCCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
* *
24643265 TTAAATTAAAAAGCTATTCAAA
193 TTAAATTAAAAAGTTATTTAAA
* * * * * * * *
24643287 AGAGGATTGTTTCTCTCTTTCTTCTTGGTCAAACTTTCGAGCTTGTCAAACTTTTACGAGTTCTT
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAAGAGTTCTT
24643352 TTATAACTTCGGTTCCTTAAAGTACTCAAGAC
66 TTATAACTTCGGTTCCTTAAAGTACTCAAGAC
24643384 TATCCATTCC
Statistics
Matches: 468, Mismatches: 53, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
215 37 0.08
216 245 0.52
217 151 0.32
218 35 0.07
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (214 bp):
TGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAAGAGTTCTT
TTATAACTTCGGTTCCTTAAAGTACTCAAGACATATTATTCCTTCGAGCAATTTTCGAACATTCC
ATGCTCGGAAATCACTCCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTA
AATTAAAAAGTTATTTAAA
Found at i:24643437 original size:30 final size:30
Alignment explanation
Indices: 24643398--24643464 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
24643388 CATTCCATCG
*
24643398 ACAAATTGTCAAACTTTTACGAGTTCTTTT
1 ACAACTTGTCAAACTTTTACGAGTTCTTTT
24643428 ACAACTTGTCAAACTTTTACGAGTTCTTTT
1 ACAACTTGTCAAACTTTTACGAGTTCTTTT
*
24643458 ATAACTT
1 ACAACTT
24643465 CTGTTCCTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.43
Consensus pattern (30 bp):
ACAACTTGTCAAACTTTTACGAGTTCTTTT
Found at i:24643693 original size:322 final size:321
Alignment explanation
Indices: 24643110--24643727 Score: 909
Period size: 322 Copynumber: 1.9 Consensus size: 321
24643100 TGAACTTTCG
* *
24643110 AACTTGTCAAACATTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGTCAAACTAT
1 AACTTGTCAAACATTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACAAACGAT
* * *
24643175 TCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTTG
66 ACCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCTCACCATTTAGTCTAAATAGTTTG
* *
24643240 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGCTATTCAAAAGAGGATTGTTTCTCTCT
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGCTATTCAAAAGAGAATTGTTTCTCCCT
* * * * *
24643305 TTCTTCTTGGTCAAACTTTCGAGCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
196 TGCTTCTTGGCCAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTT
* *
24643370 AAAGTACTCAAGACTATCCATTCCATCGA-CAAATTGTCAAACTTTTACGAGTTCTTTTAC
261 AAAGTACTCAAGACGAACCATTCCATCGAGCAAATTGTCAAACTTTTACGAGTTCTTTTAC
* *
24643430 AACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTACTCAAGACTATATC
1 AACTTGTCAAACATTTT-CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGAC-A-AAC
* * *
24643494 GATACCTTCGAGCAATTTTTCGAACATTCCATGCTGGGGAAAT-TGCTCCATTTAGTCTAAATAG
63 GATACCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCT-CACCATTTAGTCTAAATAG
* * * * * *
24643558 TTTTTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAAAAGTTTTTTAAATGAGAATTGTTTCT
127 TTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGCTATTCAAAAGAGAATTGTTTCT
* * *
24643623 CCCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAGCATTTACGAGTTCTTTTATAACTTTGGTT
192 CCCTTGCTTCTTGGCCAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT
* *
24643688 CCTTAAAGTACTCAAGTCGAACCATTCCTTCGAGCAAATT
257 CCTTAAAGTACTCAAGACGAACCATTCCATCGAGCAAATT
24643728 TTTGAACATT
Statistics
Matches: 263, Mismatches: 30, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
319 4 0.02
320 51 0.19
321 2 0.01
322 200 0.76
323 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.39
Consensus pattern (321 bp):
AACTTGTCAAACATTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACAAACGAT
ACCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCTCACCATTTAGTCTAAATAGTTTG
TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGCTATTCAAAAGAGAATTGTTTCTCCCT
TGCTTCTTGGCCAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTT
AAAGTACTCAAGACGAACCATTCCATCGAGCAAATTGTCAAACTTTTACGAGTTCTTTTAC
Found at i:24643812 original size:216 final size:216
Alignment explanation
Indices: 24643430--24655970 Score: 13358
Period size: 216 Copynumber: 58.2 Consensus size: 216
24643420 GTTCTTTTAC
* * * * *
24643430 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTACTCAAGACTATATCG
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGAC--GATCC
* * * * * * *
24643495 ATACCTTCGAGCAATTTTTCGAACATTCCATGCTGGGGAAATTGCTCCATTTAGTCTAAATAGTT
64 ATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTT
* * * * * *
24643560 TTTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAAAAGTTTTTTAAATGAGAATTGTTTCTCC
129 TGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
*
24643625 CTTGCTTCTTGGCCGAACTTCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * * *
24643648 AACTTGTCAAGCATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTACTCAAGTCGAACCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * *
24643713 TCCTTCGAGCAAATTTT-TGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTT
66 TCCTTCGA-CCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * * *
24643777 GTCATTTTGTAAACATCTTTTGGTCTTTAAATTAAAAAGTTATTCAAAAGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* *
24643842 TTTCTTCTTGGTCGAACATT-CG
195 TTGCTTCTTGGACGAAC-TTCCG
* * * * * * * *
24643864 AACTTGTCAAACTTTTACGACTTCTTTTATAACATCGATTCCTTACAGTAATCAAGACTATCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * ** * *
24643929 TGCTTCGA-AAATTTTATGAACATTCCATGCTCGGGAAATCACACCATTTACTGTAAATAGTTTT
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * * * *
24643993 TCATTTTGTAAA-AACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGGGACTAT-TTTGTCTC
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTCTC
* * *
24644056 TTGGTTCTTAGACAAACTTCCG
195 TTGCTTCTTGGACGAACTTCCG
* * * * *
24644078 AACATGTCAAACATTTAAGAGTCCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * * *
24644143 TCTTTCGACCAATTTTACGAACACTCCATGCTTGAGAAATCGGACCATTTGCTCTAAATAGTTTG
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * * * *
24644208 TAATTTTGTAAACAACTTTTTGTATTTAAATTAAAAACTAATTTACGTGAGAACTT-TTTGTCTC
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAA-TTGTTTCTCTC
* **
24644272 TTGCTTCTTGGAAGAACTTTTG
195 TTGCTTCTTGGACGAACTTCCG
* * * *
24644294 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTTGGTTCCTGAGAGTA-TGCAAGATGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACT-CAAGACGATCCA
* * * *** *
24644358 TTCCTTTGACCAATTTTACGTACTTTCCATTG-TAAAGAAATCGCACCATTTGCTCTAAATAGTT
65 TTCCTTCGACCAATTTTACGAACATTCCA-TGCTCGGGAAATCGCACCATTTGGTCTAAATAGTT
* * * * * * * *
24644422 TGTCATTTCGTAAACAA-TTTT-TTAATTTAAATTTAAAACTAATTTACGTGAGAATTTTTTATC
129 TGTCATTTTGTAAACAACTTTTGGT-CTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* * * *
24644485 TCATGGTTCATAGACGAA-TTCCG
193 TCTTGCTTCTTGGACGAACTTCCG
* * *
24644508 AACTTGTCAAACATTTAAGAGTTCTTCTATAACTTCGGTTCC-TAAGAGTATTCAAGATGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTACTCAAGACGATCCA
* * * * * *
24644572 TTCCTTCGACCAATTTTATGAGCATTCCATGCTCGAGCAATCGCATCAATTGGTCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * * *
24644637 TTCATTTTGTAAACAACGTTTAGTCTTTGAATTAAAGACTTATTTACATGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * *
24644702 TAGCTTCTTGGCCGAACTTCCA
195 TTGCTTCTTGGACGAACTTCCG
* ** * **
24644724 AACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTTGAGTACTCAAGACTATATTG
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGAC--GATCC
* * * * * *
24644789 ATTCCTTCGAGCAATTGTCCGAACATTCCTTGCTTGGGAAATCGCTCCATTTGGTCTAAATAGTT
64 ATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTT
* * * *
24644854 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCC
129 TGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* * *
24644919 CTTGCTTCTTGGCCAAACTTTCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * *
24644942 AACTTGTCAAACATTTAGGAGTTCTTTTATAACTTCGGTTCTTTAAAGTACTCAAGTCGAACCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * *
24645007 TCCTTCGAGCAAATTTT-TGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTT
66 TCCTTCGA-CCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
*
24645071 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAGA---A---A-A-GAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * *
24645128 TTTCTTCTTGGTCGAACTTTCG
195 TTGCTTCTTGGACGAACTTCCG
* * **
24645150 AGCTTGTCAAACTTTTACA-AGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGGTTG-TCC
1 AACTTGTCAAACATTTA-AGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAA-GACGATCC
* * * * *
24645213 ATTCCATCGACAAATTTTATGAACATTCCATGCTCGGGAAATCACACCATTTGCTCTAAATAGTT
64 ATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTT
* * * * * * * *
24645278 TTTCATTTTGTAAAAAACTTTTTGTCCTTAAATTAAAAACTAATTTACGTGAGACTAT-TTTGTC
129 TGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTC
* *
24645342 TCTTGGTTCTTGGACGAACTTTCG
193 TCTTGCTTCTTGGACGAACTTCCG
** * * * *
24645366 AACAAGTCAAACATTTAAGAGTTCTTTTATAACTTCAGTTCCTGAGAGTACTCAAGACGATACAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * * *
24645431 TCTTTCGACCAATTTTACGAACATTCCATGCTTGAGAAATCGTACCATTTGCTCTATATAGTTTG
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* ** * * * *
24645496 TTATTTTGTAAACAACTTTTTCTATTTAAATTAAAAACTAATTTACATGAGAATTTTTTGTCTCT
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT
24645561 TGCTTCTTGGACGAACTGT-CG
196 TGCTTCTTGGACGAACT-TCCG
*
24645582 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTA-TGCAAGACGATCC
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTACT-CAAGACGATCC
* * *
24645645 ATTCCTTCGACCAATTTTACGAACTTTCCATTCT-GGAGAAATCGCACCATTTGCTCTAAATAGT
64 ATTCCTTCGACCAATTTTACGAACATTCCATGCTCGG-GAAATCGCACCATTTGGTCTAAATAGT
**** * * * *
24645709 TTGTCATTTTGTAAACAACTTTTTAAATTTAAATTAAAAACTAATTTACGTGAGAATTTTTTATC
128 TTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* *
24645774 TCTTGGTTCTTAGACGAACTTCCG
193 TCTTGCTTCTTGGACGAACTTCCG
* * * * *
24645798 AACTTGTCAAACATTTAAGAGTTCTTCTGTAACTTCGGTTCC-TAAGATTATTCAAGATGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTACTCAAGACGATCCA
* * * * *
24645862 TTCCTTTGACCAATTTTACGAGCATTCCATGCTCGAGAAATCGCAACAATTGGTCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * *
24645927 TTCATTTTGTAAACAACGTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * *
24645992 TAGCTTCTTGGCCGGACTTCCA
195 TTGCTTCTTGGACGAACTTCCG
* ** *
24646014 AACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTTTGAGTACTCAAGACTATATC
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCC-TTAAAGTACTCAAGAC--GATC
* * * * * * *
24646079 GATTCCTTCGAGCAATTGTCCGAACATGCCTTGCTCGGGAAATCGCTCCATTTGGTCTAAATAGT
63 CATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGT
* * *
24646144 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTC
128 TTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* * *
24646209 CCTTACTTCTTGGCCGAACTTTCTAACTTTCG
193 TCTTGCTTCTTGGACGAAC--T-T--C---CG
* * * *
24646241 AACTTGTCAAACATTTAGGAGTTCTTTTATAACTTCGGCTCCTTAAAGTACTCAAGTCGAACCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * * *
24646306 TCCTTTGAGCAAATTTT-CGATCATTCCACGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTT
66 TCCTTCGA-CCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* *
24646370 GTCATTTTGTAAACAACTTTTAGTCTTTAAATT--AAAC--A---A-AAGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * *
24646427 TTTCTTCTTGGTCGAACTTTCG
195 TTGCTTCTTGGACGAACTTCCG
* * **
24646449 AGCTTGTCAAACTTTTACA-AGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGATTATCCA
1 AACTTGTCAAACATTTA-AGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCA
* * * * *
24646513 TTCCATCGACAAATTTTATGAACATTCCATGCTCGGGAAATCACACCATTTGCTCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * * * * * *
24646578 TTCATTTTGTAAAAAACTTTTTGTCCTTAAATTAAAAACTAATTTACGTGAGACTAT-TTTGTCT
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTCT
* *
24646642 CTTGGTTCTTGGACGAACTTTCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * * * *
24646665 AACATGTCAAACATTTATGAGTTCTTTTATAACTTCAGTTCCTGAGAGTACTCAAGACGATACAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * *
24646730 TCTTTCGACCAATTTTACGAACATTCCATGCTTGAGAAATCGCACCATTTGCTCTATATAGTTTG
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * * *
24646795 TCATTTTGTAAACAACTTTTTGTATTTAAATTAAAAACTAATTTACATGAGAATTTTTTGTCTCT
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT
*
24646860 TGCTTCTTGGACGAA-TTGTCG
196 TGCTTCTTGGACGAACTT-CCG
*
24646881 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTA-TGCAAGACGATCC
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTACT-CAAGACGATCC
* * *
24646944 ATTCCTTCGACCAATTTTACGAACTTTCCATTCT-GGAGAAATCGCACCATTTGCTCTAAATAGT
64 ATTCCTTCGACCAATTTTACGAACATTCCATGCTCGG-GAAATCGCACCATTTGGTCTAAATAGT
* ** * * * *
24647008 TTGTCATTTTGTAAACAACTTTTTGAATTTAAATTAAAAACTAATTTACGTGAGAATTTTTTATC
128 TTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* *
24647073 TCTTGGTTCTTAGACGAACTTCCG
193 TCTTGCTTCTTGGACGAACTTCCG
** * *
24647097 AACTTGTCAAACATTTAAGAGTTCTCCTATAACTTCGATTCC-TAAGAGTATTCAAGACGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTACTCAAGACGATCCA
* * **
24647161 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGAGAAATCACGTCATTTGGTCTAAATCA-TT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAAT-AGTT
* * * * *
24647225 TTTCATTTTGTAAACAACGTTTGGTCTTTAAATTAAAAACTTATTTACATAAGAATTGTTCCGCT
129 TGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* *
24647290 CTAGCTTCTTGGCCGAACTTCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * * *
24647313 AACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCCGTTCCTTAAAGTACTCAAGACTATATCG
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGAC--GATCC
* ** * * *
24647378 ATACCTTCGAGTAATTTTTC-AAGCATTCCATGCTCGGGAAATTGCTCCATTTGGTCTAAATAGT
64 ATTCCTTCGACCAATTTTACGAA-CATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGT
* * * * * *
24647442 TTTTCATTTTGTAAACAACATTTGGTCTTTCAATT-AAAAGTTTTTTAAATGAGAATTGTTTCTC
128 TTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* * * *
24647506 CCTTGCTTCTCGGTCGAACTTTCG
193 TCTTGCTTCTTGGACGAACTTCCG
* * * * *
24647530 AACTTGTCAAACATTTACGAGTTCTTTTATATCTTCGATTCCTT-AAGTACTCAAGTCGAACCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * **
24647594 TCCTTCGAGCAAATTT-CGAACATTCCATGCTCGGGAAGTCTTACCATTTGGTCTAAATAGTTTG
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * * *
24647658 CCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTCAAAAGAGAATTGTTTCTCTCT
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT
* *
24647723 TTCTTCTTGGTCGAACATT-CG
196 TGCTTCTTGGACGAAC-TTCCG
* * * * * * * * * * *
24647744 AACTTGTCAGACTTTTACGACTTATTTTATAACATCGATTCCTTACAGTAATCAAGACTAGCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * ** * *
24647809 TCCTTCGA-CAAATTTATGAACATTCCATGATCGGGAAATCACACCATTTACTGTAAATAGTTTT
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * * * *
24647873 TCATTTTGTAAAAAATCTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGACTAT-TTTGTCT
131 TCATTTTGTAAACAA-CTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTCT
* * *
24647937 CTTGGTTCTTAGACGAACTCCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * * *
24647960 AACATGTCAAACATTTAAGAGTCCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * *
24648025 TCTTTCGACCAATTTTACGAACACTCCATGCTTGAGAAATCGCACCATTTGCTCTAAATAGTTTG
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * * * * *
24648090 TCATTTTGTAAACAACTTTTTGTATTTAAATTTAAAACTAATTTACGTGAGAACTT-TTTGTGTC
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAA-TTGTTTCTCTC
* *
24648154 TTGCTTCTTGGAAGAACTTTCG
195 TTGCTTCTTGGACGAACTTCCG
* *
24648176 AACTTGTCAAACATTTAAGAG-TCTTTTATAACTTCGGTTCCTGACAGTA-TGCAAGACGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACT-CAAGACGATCCA
* * * * *** *
24648239 TTCCTTTGACCAATTTTACGTACTTTCCATTCTAAAGAAATCGCACCATTTGCTCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * * * * *
24648304 GTCATTTCGTAAACAA-TTTT--TAATTTAAATTTAAAACTAATTTACGTGAGAATTTTTTATCT
130 GTCATTTTGTAAACAACTTTTGGT-CTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* * * *
24648366 CATGGTTCATAGACGAACTTCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * * *
24648389 ACCTTGTCAAACATTTAAGAGTTCTTCTATAGCTTCGGTTCC-TAAGAGTATTCAAGATGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTACTCAAGACGATCCA
* * * *
24648453 TTCCTTCGACCAATTTTAC-AAGCATTCCATGCTTGAGAAATCGCATCAATTGGTCTAAATAGTT
65 TTCCTTCGACCAATTTTACGAA-CATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTT
* * * *
24648517 TTTCATTTTGTAAACAACGTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
129 TGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* * *
24648582 CTAGCTTCTTGGCCGGACTTCC-
194 CTTGCTTCTTGGACGAACTTCCG
* ** * *
24648604 AACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTTGAGTACTCAAGACTATATCG
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGAC--GATCC
* * * * *
24648669 ATTCCTTCGAGCAATTGTCCGAACATTCCTTGCTCGGGAAATCGCTCCATTTGGTCTAAATAGTT
64 ATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTT
* * * *
24648734 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCC
129 TGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* *
24648799 CTTGCTTCTTGGCCGAACTTTCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * *
24648822 AACTTGTCAAACATTTAGGAGTTCCTTTATAACTTCGGTTCCTTAAAGTACTCAAGTCGAACCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * **
24648887 TCCTTCGAGCAAATTTT-CGAACATTCCATGCTCGGGAAGTCTAACCATTTGGTCTAAATAGTTT
66 TCCTTCGA-CCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* *
24648951 GTCATTTTGTAAACAACTTTTGGTCTTTAAATT--GAAC--A---A-AAGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * *
24649008 TTTCTTCTTGGTCGAACTTTCG
195 TTGCTTCTTGGACGAACTTCCG
* * * **
24649030 AGCTTGTCAAACTTTTACA-AGTTCTTTTATAACTTCGGTTCCTTAAATTACTCAAGATTATCCA
1 AACTTGTCAAACATTTA-AGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCA
* * * * * * *
24649094 TTCCATCGACAAATTTTATGAACATTCCGTGCTCGAGAAATCGCACCATTTGCTCTATATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * * *
24649159 GTCATTTTGTAAACAACTTTTTGTATTTAAATTAAAAACTAATTTACATGAGAATTTTTTGTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
24649224 TTGCTTCTTGGACGAACTGT-CG
195 TTGCTTCTTGGACGAACT-TCCG
*
24649246 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTA-TGCAAGACGATCC
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTACT-CAAGACGATCC
* * * * * *
24649309 ATTCCTTCGACCAATTTTACGAACTTTCAATTCTAGAGAAATCGCACCATTTGCTCTAAATAGTT
64 ATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTT
* ** * * * *
24649374 TGTCATTTTGTAAACAACTTTTTGAATTTAAATTAAAAACTAATTTACGTGAGAATTTTTTATCT
129 TGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* *
24649439 CTTGGTTCTTAGACGAACTTCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * * *
24649462 AACTTGTCAAACATTTAAGAGTTCTTCTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* ** *
24649527 TCCTTCGACCAATTTTACGAACATTCCATGCTCGAGAAATCGCGTCATTTGGTCTAAATAGTTTT
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * *
24649592 TCATTTTGTAAACAACGTTTGGTCTTTAAATTAAAAACTTATTTACATAAGAATTGTTCCGCTCT
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT
* *
24649657 AGCTTCTTGGCCGAACTTCCG
196 TGCTTCTTGGACGAACTTCCG
* * *
24649678 AACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTC-GTTCCTTAAAGTACTCAAGACTATATC
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTACTCAAGAC--GATC
* * ** * * *
24649742 GATACCTTCGAGTAATTTT-CGAGCATTCCATGCTCGGGAAATTGCTCCATTTGGTCTAAATAGT
63 CATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGT
* * * * * *
24649806 TTTTCATTTTGTAAACAACATTTGGTCTTTCAATTAAAAAGTTTTTTAAATGAGAATTGTTTCTC
128 TTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* * *
24649871 CCTTGCTTCTCGGTCGAACTTCCG
193 TCTTGCTTCTTGGACGAACTTCCG
* * * * * *
24649895 AACTTGTCAAACATTTACGAGTTCTTTTATATCTTCGATTCCTTAAAGTACTTAAGTCGAACCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * *
24649960 TCCTTCGAGCAAATTTCCGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTC-AAATAGTTTG
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * *
24650024 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTCAAAAGAGAATTGTTTCTCTCT
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT
* *
24650089 TTCTTCTTGGTCGAACATT-CG
196 TGCTTCTTGGACGAAC-TTCCG
* * * * * * * * *
24650110 AACTTGTCAAACTTTTACGACTTCCTTTATAACATCGATTCCTTACAGTAATCAAGACTATCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * ** *
24650175 TCCTTCGACAAATTTTATGAACATTCCATGCTCGGCAAATCACACCATTTACTGTAAATAGTTT-
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * * *
24650239 TACATTTTGTAAA-AATCTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGACTAT-TTTGTC
131 T-CATTTTGTAAACAA-CTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTC
* * * *
24650302 TCTTGGTTCTTAGACAAACTTTCG
193 TCTTGCTTCTTGGACGAACTTCCG
* * * * * * *
24650326 AACATGTCAAACATTTAAGAGTCCTATTATAACTTCAGTTCCTGAGAGTATTCAAGACGATCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * *
24650391 TCTTTCGACCAATTTTACGAACACTCCATGCTTGAGAAATCGCACCATTTGCTCTAAATAGTTTG
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * * *
24650456 TCATTTTGTAAACAACTTTTTGTATTTAAATTAAAAACTAATTTACGTGAGAACTT-TTTGTCTC
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAA-TTGTTTCTCTC
* *
24650520 TTGCTTCTTGGAAGAACTTTCG
195 TTGCTTCTTGGACGAACTTCCG
* * *
24650542 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTA-TGCAAGATGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACT-CAAGACGATCCA
* * * * * * *
24650606 TTCCTTTGACCAATTTTACGTACTTTCCATTCTAGAGAAATCGCACCATTTGCTCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* ** * * * * * * *
24650671 TTCATTTTGTAAAC-A-TTTTTTTAATTTATATTTAAAACTAATTTACGTGAGAATTTTTTATCT
130 GTCATTTTGTAAACAACTTTTGGT-CTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* * *
24650734 CATGGTTCTTAGACGAACTTCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * *
24650757 AACTTGTCAAACATTTAAGAGTTCTTCTATAACTTCGGTTCC-TAATAGTATTCAAGATGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTACTCAAGACGATCCA
* * * *
24650821 TTCCTTCGACCAA-TTTACGAGCATTCCATGCTCGAGAAATCGCAACAATTGGTCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * *
24650885 TTCATTTTGTAAACAACGTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * *
24650950 TAGCTTCTTGGCCGGACTTCCA
195 TTGCTTCTTGGACGAACTTCCG
* ** * **
24650972 AACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTTGAGTACTCAAGACTATATTG
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGAC--GATCC
* * * *
24651037 ATTCCTTCGAGCAATTTTCCGAACATTCCTTGCTCGGGAAATCGCTCCATTTGGTCTAAATAGTT
64 ATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTT
* * * *
24651102 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCC
129 TGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
*
24651167 CTTGCTTCTTGG-CGTAACTTTCG
194 CTTGCTTCTTGGACG-AACTTCCG
* * ** *
24651190 AACTTGTCAAACATTTAGGAGTTATTTTATAACTTCGGTTCCTTAAAGTACTCAACTCGAACCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * *
24651255 TCCTTCGAGCAAATTTT-CGAACACTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTT
66 TCCTTCGA-CCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * *
24651319 GTCATTTTGTAAACAACTTTTGGTCTTTAAATT--AAAC--A---A-AAGAGAATTGTTGCTCCC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * *
24651376 TTTCTTCTTGGTCGAACTTTCG
195 TTGCTTCTTGGACGAACTTCCG
* * * **
24651398 AGCTTGTCAAACTTTTACA-AGTTCTTTTATAACTTCGGTTCCTTAAAGCACTCAAGATTATCCA
1 AACTTGTCAAACATTTA-AGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCA
* ** * * * * **
24651462 TTCCATCGATAAATTTTATGAACATTCCCTGCTCGAGAAATCACACCATTTGCCCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * * * * * *
24651527 TTCATTTTGTAAAAAACTTTTTGTCCTTAAATTAAAAACTAATTTACGTGAGACTAT-TTTGTCT
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTCT
*
24651591 CTTGGTTCTTGGACGAACTTCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * * *
24651614 AACATGTCAAACATTTAAGAGTTCTTTTATAACTTCAGTTCCTGAGAGTACTCAAGACGATACAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * *
24651679 TCTTTCGACCAATTTTACGAACATTCCATGCTTGAGAAATCGCACCATTTGCTCTATATAGTTTG
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * *
24651744 TCATTTTGTAAACAACTTTTTGTATTTAAATTAAAAACTAATTTACATGAGAATT-TTT-TCTCT
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT
*
24651807 TGCTTCTTGGACGAACTTTCG
196 TGCTTCTTGGACGAACTTCCG
* * * * *
24651828 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCAGTTCCTGAGAGCA-TGGAAGACGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACT-CAAGACGATCCA
* * * ** *
24651892 TTCCTTCGACCAATTTCACGAACTTTCCATTCT-GGAGAAATCGCACCATTTTCTCAAAATAGTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGG-GAAATCGCACCATTTGGTCTAAATAGTT
* ** * * * * *
24651956 TGTCATTTTGTAAACAACTTTTTGAATTTAAATTAAAAACTAAGTTACGTGAGAATTTTTTATCT
129 TGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* *
24652021 CTTGGTTCTTAGACGAACTTCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * * *
24652044 AACTTGTCAAACATTTAAGAGTTCTTTTATGACTTCGATTCCTGAGAGTATTCAAGACGATCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * ** *
24652109 TCTTTCGACCAATTTTATGAACATTCCATGCTCGAGAAATCACGTCATTTGGTCTAAATAGTTTT
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* *
24652174 TCATTTTGTAAACAACGTTTGGTCTTTAAATTAAAAACTTATTTACATAAGAATTGTTTCGT-TC
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTC-TCTC
* *
24652238 TAGCTTCTTGGCCGAACTTCCG
195 TTGCTTCTTGGACGAACTTCCG
* * *
24652260 -ACTTGTCAAACTTTTACA-AGTTCTTTTATAACTTCCGTTCCTTAAAGTACTCAAGACTATATC
1 AACTTGTCAAACATTTA-AGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGAC--GATC
* * ** * * * *
24652323 GATACCTTCGAGTAATTTTTCGAACATTCCATGCTCGAGAAATTGCTCCATTTGGTCTAAATAGT
63 CATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGT
* * * * *
24652388 TTTTCATTTTGTAAACAACTTTTGGTCTTTCAATT--AAATTTTTTTAAATGAGAATTGTTTCTC
128 TTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* * * * *
24652451 CCTTGCTTCTCGGCCAAACTTCCA
193 TCTTGCTTCTTGGACGAACTTCCG
* * * * *
24652475 AACTTGTCAAACATTTACGAGTTCTTTTATATCTTCGGTTCCCTAAAGTACTCAAGTCGAACCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * *
24652540 TCCTTCGAGCAAATGTT-CGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTT
66 TCCTTCGA-CCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * *
24652604 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTCAAAAGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * *
24652669 TTTCTTCTTGGTCGAA-TATTCG
195 TTGCTTCTTGGACGAACT-TCCG
* * * * * * * * *
24652691 AACTTGTCAAACTTTTACGACTTCTTTTGTAACATCGATTCCTTACAGTAATCAAGACTATCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * ** * *
24652756 TCCTTCGACAAATTTTATGAACATTCCATGCTCGGCAAATCACACCATTTACTGTAAATAGTTTT
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * * * * *
24652821 TCATTTTGTAAAAAACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGGGACTAT-TTTGTCTC
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTCTC
* *
24652885 TTGGTTCTTAGACGAACTTCCG
195 TTGCTTCTTGGACGAACTTCCG
* * * * *
24652907 AACATGTCAAACATTTAAGAGTTCCTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * *
24652972 TCTTTCGACCAATTTTACGAACACTCCATGCTTGAGAAATCGCACCATTTGCTCTAAATAGTTTG
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * *
24653037 TCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAACTT-TTTGTCTC
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAA-TTGTTTCTCTC
* *
24653101 TTGCTTCTTGGAAGAACTTTCG
195 TTGCTTCTTGGACGAACTTCCG
* * *
24653123 AACTTGTCAAACATTGAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTA-TACAAGACGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACT-CAAGACGATCCA
* * * * * * * *
24653187 TCCCTTCGACCAATTTTACGTACTTTCCATTCTAGAGAAATCCCACCATTTGCTCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * * * * * * *
24653252 GTCATTTCGTAAACAA-TTTT-TTAATTTATATTTAAAACTAATTTACGTGAGAATTTTTTATCT
130 GTCATTTTGTAAACAACTTTTGGT-CTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* * *
24653315 CATGGTTCTTAGACGAACTTCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * *
24653338 AACTTGTCAAACATTTAAGAGTTCTTCTATAACTTCGGTTCC-TAAGAGTATTCAAGATGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTACTCAAGACGATCCA
* * * *
24653402 TTCCTTCGACCAATTTTACGAGCATTCCATGCTCGAGAAATCGCATCAATTGGTCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * * *
24653467 TTCGTTTTGTAAACAACGTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * *
24653532 TAGCTTCTTGG-CTGGACTTCCA
195 TTGCTTCTTGGAC-GAACTTCCG
* * * * * * *
24653554 AACTTATCAAACTTTTAAGAGTTCTGTTATAACTTCGGTTCCTTAGAGTACTTAAGACTATATCT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGAC--GATCC
* ** * *
24653619 ATTCCTTCGAGCAATTTTTTGAACGTTCCATGCTCGGGAAATCGCTCCATTTGGTCTAAATAGTT
64 ATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTT
* * * * * *
24653684 TGTCATTTTGTTAACAACTTTTGGACTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCC
129 TGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* *
24653749 CTTGCTTTTTGGCCGAACTTCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * * *
24653772 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTAAAGTCAAACCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * *
24653837 TCCTTCAAGCAATTTT-CTGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTA
66 TCCTTCGACCAATTTTAC-GAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * ** *
24653901 GTCATTTTGTAAAAAACTTTTGGTCCTTAAATTAAAAACTTATTTATTTGAGAATTGTTTCTCAC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * *
24653966 TTGATTTTTGAACGAACTTCCA
195 TTGCTTCTTGGACGAACTTCCG
* * * * * * * *
24653988 AACTTTTCAAACATTTAAGAGTTCTTTCATAACTTC-ATTTCTTGAGAGTATTGAAGATGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTACTCAAGACGATCCA
* * * * * *
24654052 TTCCTTCGACCAATTTTTCGAACATTTCATTCCCGGGAAATTGCATCATTTGGTCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * * * * * *
24654117 GTTATTTTGTATTA-AACTTTTTGTATTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCC
130 GTCATTTTGTA-AACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* *
24654181 CTTGCTTTTTGGCCGAACTTCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * * * *
24654204 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTACTAAAGTCAAACCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * *
24654269 TCCTTCGAGCAATTTT-CTGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTT
66 TCCTTCGACCAATTTTAC-GAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * *
24654333 GTCATTTTGTAAACAACTTTTGGTCTTTAAATT-AAAAGTTATTCAAAAGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* *
24654397 TTTCTTCTTGGTCGAACATT-CG
195 TTGCTTCTTGGACGAAC-TTCCG
* * * * * * * * *
24654419 AACTTGTCAAACTTTTACGACTTCTTTTATAACATCGATTCGTTACAGTAATCAAGACTATCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * ** * *
24654484 TCCTTCGACAAATTTTATGAACATTCCATGCTCGGCAAATCACACCATTTACTGTAAATAGTTTT
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * * * * **
24654549 TCATTTTGTAAAAAACTTTTTGTCTTTAAAATAAAAACTAATTTACGTGAGACTAT-TTTGACTC
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT-TGTTTCTCTC
* * *
24654613 TTGGTTCTTAGAAGAACTTCCG
195 TTGCTTCTTGGACGAACTTCCG
* * * *
24654635 AACATGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* * * * *
24654700 TCTTTCGACCAA-TTTACGAACACTCCATGCTTGAGAAATCGCACCATTTGCTCTAAATAGTTTG
66 TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
* * * * * * *
24654764 TCATTTTGTAAAAAACTTTTTGTATTTAAATTAAAAACTAATTTACGTGAGAACTT-TTTGTCTT
131 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAA-TTGTTTCTCTC
* *
24654828 TTGCTTCTTGGAAGAACTTTCG
195 TTGCTTCTTGGACGAACTTCCG
*
24654850 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTA-TACAAGACGATCC
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTACT-CAAGACGATCC
* * * * * *
24654913 ATTCCTTC-ACCAATTTTACGTACTTTCCATTCTAGAGAAATCGCACCATTTGCTCTAAATAGTT
64 ATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTT
* * * * * * * * *
24654977 TGTCATTTCGTAAACAA-TTTT-TTAATTTATATTTAAAACTAATTTACGTGAGAATTTTTTATC
129 TGTCATTTTGTAAACAACTTTTGGT-CTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* * * *
24655040 TCATGGTTCTTAGACGAACTTCTG
193 TCTTGCTTCTTGGACGAACTTCCG
* * *
24655064 AACTTGTCAAACATTTAAGAGTTCTTCTATAACTTCGGTTCC-TAAGAGTATTCAAGATGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTACTCAAGACGATCCA
* * * * *
24655128 TACCTTCGACCAATTTTACGAGCATTCCATGCTCGAGAAATCGCATCAATTGGTCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * * *
24655193 TTCGTTTTGTAAACAACGTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* *
24655258 TAGCTTCTTGG-CTGGACTTCCG
195 TTGCTTCTTGGAC-GAACTTCCG
* * * * * *
24655280 AACTTGTCAAACTTTTAAGAGTTCTGTTATAACTTCGGTTCCTTAGAGTACTTAAGACTATATCT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGAC--GATCC
* ** * *
24655345 ATTCCTTCGAGCAATTTTTTGAACGTTCCATGCTCGGGAAATCGCTCCATTTGGTCTAAATAGTT
64 ATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTT
* * * * * * *
24655410 TGTCATTTTGTTAACAACTTTTGGACTTTGAATTAAAAAGTTATTTAAATGAGAATTATTTCTCC
129 TGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* *
24655475 CTTGCTTTTTGGCCGAACTTCCG
194 CTTGCTTCTTGGACGAACTTCCG
* * * * * *
24655498 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTACTAAAGTCAAACCAT
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
* ** * *
24655563 TCCTTCGAGCAATTTT-CTGAACATTCCATGCTCAAGAAGTCTCACCATTTGGTCTAAATAGTTT
66 TCCTTCGACCAATTTTAC-GAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * ** **
24655627 GTCATTTTGTAAAAAACTTTTGGTCCTTAGATTAAAAACTTATTTATTTGAGAATTGTTTCTCAG
130 GTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * *
24655692 TTGATTTTTGAACGAACTTCCA
195 TTGCTTCTTGGACGAACTTCCG
* * * * * * *
24655714 AACTTTTCAAACATTTAAGAGTTCTTTCATAACTTC-GTTTCTTGAGAGTATTGAAGATGATCCA
1 AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTACTCAAGACGATCCA
* * * * * *
24655778 TTCCTTCGACCAATTTTTCGAACATTTCATTCCCGGGAAATTGCATCATTTGGTCTAAATAGTTT
65 TTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTT
* * * * * * ** *
24655843 GTTATTTTGTATTA-AACTTTTTGTATTTGAATTAAAAAGTTATTTATGTTAGAATTGTTTCTCT
130 GTCATTTTGTA-AACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* *
24655907 CTTG-TTCTTGTACGAACTTTCG
194 CTTGCTTCTTGGACGAACTTCCG
*
24655929 AA-TTGGTCAAA-ATTTTACA-AGTTCTTTTATAACATCGGTTCC
1 AACTT-GTCAAACA-TTTA-AGAGTTCTTTTATAACTTCGGTTCC
24655971 CTATTTACGT
Statistics
Matches: 10441, Mismatches: 1642, Indels: 482
0.83 0.13 0.04
Matches are distributed among these distances:
207 31 0.00
208 637 0.06
209 8 0.00
210 12 0.00
211 1 0.00
212 8 0.00
213 155 0.01
214 938 0.09
215 1735 0.17
216 5065 0.49
217 641 0.06
218 930 0.09
219 133 0.01
220 1 0.00
221 1 0.00
222 4 0.00
224 83 0.01
225 5 0.00
226 13 0.00
227 40 0.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (216 bp):
AACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACGATCCAT
TCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTG
TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT
TGCTTCTTGGACGAACTTCCG
Found at i:24643921 original size:538 final size:537
Alignment explanation
Indices: 24642893--24643929 Score: 1772
Period size: 538 Copynumber: 1.9 Consensus size: 537
24642883 CGGACTTCCA
* *
24642893 AACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTAGAGTACTCAAGACTATATTG
1 AACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACTATATCG
* *
24642958 ATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGAAATCGCTCCATTTGGTCTAAATAGTTT
66 ATACCTTCGAGCAATTTTCTGAACATTCCATGCTCGGAAATCGCTCCATTTAGTCTAAATAGTTT
24643023 GTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCC
131 GTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCC
* * *
24643088 TTGCTTCTTGGCTGAACTTTCGAACTTGTCAAACATTTTCGAGTTCTTTTATAACTTCGGTTCCT
196 TTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCT
*
24643153 TAAAGTACTCAAGTCAAACTATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAGTCTC
261 TAAAGTACTCAAGTCAAACCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAGTCTC
24643218 ACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGCTATT
326 ACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGCTATT
* * * *
24643283 CAAAAGAGGATTGTTTCTCTCTTTCTTCTTGGTCAAACTTTCGAGCTTGTCAAACTTTTACGAGT
391 CAAAAGAGAATTGTTTCTCTCTTTCTTCTTGGTCAAACATTCGAACTTGTCAAACTTTTACGACT
* * *
24643348 TCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACTATCCATTCCATCGACAAATTGTCAAACT
456 TCTTTTATAACATCGATTCCTTAAAGTAATCAAGACTATCCATTCCATCGACAAATTGTCAAACT
24643413 TTTACGAGTTCTTTTAC
521 TTTACGAGTTCTTTTAC
* *
24643430 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTACTCAAGACTATATCG
1 AACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACTATATCG
* *
24643495 ATACCTTCGAGCAATTTT-TCGAACATTCCATGCTGGGGAAATTGCTCCATTTAGTCTAAATAGT
66 ATACCTTCGAGCAATTTTCT-GAACATTCCATGCT-CGGAAATCGCTCCATTTAGTCTAAATAGT
* *
24643559 TTTTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAAAAGTTTTTTAAATGAGAATTGTTTCTC
129 TTGTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAAAAGTTATTTAAATGAGAATTGTTTCTC
* *
24643624 CCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAGCATTTACGAGTTCTTTTATAACTTTGGTTC
194 CCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTC
* *
24643689 CTTAAAGTACTCAAGTCGAACCATTCCTTCGAGCAAATTTT-TGAACATTCCATGCTCGGGAAGT
259 CTTAAAGTACTCAAGTCAAACCATTCCTTCGAGC-AATTTTCCGAACATTCCATGCTCGGGAAGT
* *
24643753 CTCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATCTTTTGGTCTTTAAATTAAAAAGTT
323 CTCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGCT
*
24643818 ATTCAAAAGAGAATTGTTTCTCTCTTTCTTCTTGGTCGAACATTCGAACTTGTCAAACTTTTACG
388 ATTCAAAAGAGAATTGTTTCTCTCTTTCTTCTTGGTCAAACATTCGAACTTGTCAAACTTTTACG
*
24643883 ACTTCTTTTATAACATCGATTCCTTACAGTAATCAAGACTATCCATT
453 ACTTCTTTTATAACATCGATTCCTTAAAGTAATCAAGACTATCCATT
24643930 GCTTCGAAAA
Statistics
Matches: 468, Mismatches: 29, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
536 1 0.00
537 92 0.20
538 369 0.79
539 6 0.01
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.40
Consensus pattern (537 bp):
AACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACTATATCG
ATACCTTCGAGCAATTTTCTGAACATTCCATGCTCGGAAATCGCTCCATTTAGTCTAAATAGTTT
GTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCC
TTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCT
TAAAGTACTCAAGTCAAACCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAGTCTC
ACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGCTATT
CAAAAGAGAATTGTTTCTCTCTTTCTTCTTGGTCAAACATTCGAACTTGTCAAACTTTTACGACT
TCTTTTATAACATCGATTCCTTAAAGTAATCAAGACTATCCATTCCATCGACAAATTGTCAAACT
TTTACGAGTTCTTTTAC
Found at i:24656042 original size:90 final size:89
Alignment explanation
Indices: 24655883--24656060 Score: 211
Period size: 90 Copynumber: 2.0 Consensus size: 89
24655873 ATTAAAAAGT
* * * *
24655883 TATTTATGTTAGAATTGTTTCTCTCTTGTTCTTGTACGAACTTTCGAATTGGTCAAAATTTTACA
1 TATTTACGTGAGAATTGTTTATCTCTTGTTCTTGTACGAACTTCCGAATTGGTCAAAATTTTACA
* *
24655948 AGTTCTTTTATAACATCGGTTCCC
66 AGTTCTTCTATAACACCGGTTCCC
* *
24655972 TATTTACGTGAGAATTTTTTATCTCTTGGTTCTTAG-ATGAACTTCCGAACTT-GTCAAACA-TT
1 TATTTACGTGAGAATTGTTTATCTCTT-GTTCTT-GTACGAACTTCCGAA-TTGGTCAAA-ATTT
24656034 TA-AGAGTTCTTCTATAACACCGGTTCC
62 TACA-AGTTCTTCTATAACACCGGTTCC
24656061 TGAGAGTATT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
89 24 0.32
90 48 0.63
91 4 0.05
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.43
Consensus pattern (89 bp):
TATTTACGTGAGAATTGTTTATCTCTTGTTCTTGTACGAACTTCCGAATTGGTCAAAATTTTACA
AGTTCTTCTATAACACCGGTTCCC
Found at i:24656617 original size:216 final size:216
Alignment explanation
Indices: 24655980--24656804 Score: 990
Period size: 216 Copynumber: 3.8 Consensus size: 216
24655970 CCTATTTACG
* * * *
24655980 TGAGAATTTTTTATCTCTTGGTTCTTAGAT-GAACTTCCGAACTTGTCAAACATTTAAGAGTTCT
1 TGAGAATTGTTTCTCTCTTGCTTCTT-GGTCGAACTTCCGAACTTGTCAAACATTTAAGAGTTCT
* ** * * * * * *
24656044 TCTATAACACCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTTAC-GAACAT
65 TTTATAACTTCGGTTCCTTAAAGTACTCAAGACAATCCATTCCTTCGAGCAATTTT-CTGAACAT
* * ** * * * *
24656108 TCCATGCTCGAGAAACCGCGTCATTTGGTCTAAATAATTTTTCATTTTGTAAACAACGTTTAGTC
129 TCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* * *
24656173 TTTGAATTAGAAACTTATTTACA
194 TTTGAATTAAAAAGTTATTTAAA
* * * *
24656196 TGAGAATTGTTTCTCTCTAGCTTCTTGGTCGGACTTCTGAACTTGTCAAACTTTTAAGAGTTCTT
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGTCGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTT
* * * * *
24656261 TTATAACTTCGGTTCCTTAGAGTACTCAAGACTATATCGATTCGTTCGAGCAATTTTCCGAACGT
66 TTATAACTTCGGTTCCTTAAAGTACTCAAGAC-A-ATCCATTCCTTCGAGCAATTTTCTGAACAT
* * * *
24656326 TCCATGCTTGGGAAATCGCTCTATTTGGTCTAAATAGTTTGTCATTTTGTTAACAACTTTTGGTC
129 TCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
24656391 TTTGAATTAAAAAGTTATTTAAA
194 TTTGAATTAAAAAGTTATTTAAA
* * * * *
24656414 TGAGAATTGTTTCTCCCTTGCTTTTTGGCCGAACTTCCGAATTTGTCAAACATTTACGAGTTCTT
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGTCGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTT
* * * *
24656479 TTATAACTTTGGTTCCTTAAAGTACTAAAGTCAAACCATTCCTTCGAGCAATTTTCTGAACATTC
66 TTATAACTTCGGTTCCTTAAAGTACTCAAGACAATCCATTCCTTCGAGCAATTTTCTGAACATTC
* *
24656544 CATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
131 CATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* *
24656609 TAAATTAAAAAGTTATTCAAA
196 TGAATTAAAAAGTTATTTAAA
* * ** * * * *
24656630 AGAGAATTGTTTCTCTCTTTCTTCTTGGTCGAACTTTTGAGCTTGTCAAACTTTTACGAGTTTTT
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGTCGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTT
* ** * *
24656695 TTATAACTTCGGTTCCTTAAAGTACTCGAGACTCTCCATTCCATCGA-CAAATTTTATGAACATT
66 TTATAACTTCGGTTCCTTAAAGTACTCAAGACAATCCATTCCTTCGAGC-AATTTTCTGAACATT
* * *
24656759 CCATGCTCGGGAAATCACACCATTTGCTCTAAATAGTTTTTCATTT
130 CCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTT
24656805 AAGAGTTCTT
Statistics
Matches: 521, Mismatches: 83, Indels: 10
0.85 0.14 0.02
Matches are distributed among these distances:
215 3 0.01
216 335 0.64
217 2 0.00
218 181 0.35
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (216 bp):
TGAGAATTGTTTCTCTCTTGCTTCTTGGTCGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTT
TTATAACTTCGGTTCCTTAAAGTACTCAAGACAATCCATTCCTTCGAGCAATTTTCTGAACATTC
CATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
TGAATTAAAAAGTTATTTAAA
Found at i:24656904 original size:120 final size:120
Alignment explanation
Indices: 24656682--24656924 Score: 315
Period size: 120 Copynumber: 2.0 Consensus size: 120
24656672 TTGTCAAACT
* * * * * **
24656682 TTTACGAGTTTTTTTATAACTTCGGTTCCTTAAAGTACTCGAGACTCTCCATTCCATCGACAAAT
1 TTTAAGAGTTCTTTTATAACTTCGATTCCTGAAAGTACTCAAGACGATCCATTCCATCGACAAAT
* * *
24656747 TTTATGAACATTCCATGCTCGGGAAATCACACCATTTGCTCTAAATAGTTTTTCA
66 TTTACGAACATTCCATGCTCGAGAAATCACACCATTTGCTCTAAATAGTTTGTCA
* * * ** *
24656802 TTTAAGAGTTCTTTTATAACTTCGATTGCTGAGAGTATTCAAGACGATCCATTCTTTCGACCAAT
1 TTTAAGAGTTCTTTTATAACTTCGATTCCTGAAAGTACTCAAGACGATCCATTCCATCGACAAAT
* * *
24656867 TTTACGAACATTCCATGCTTGAGAAATCGCACTATTTGCTCTAAATAGTTTGTCA
66 TTTACGAACATTCCATGCTCGAGAAATCACACCATTTGCTCTAAATAGTTTGTCA
24656922 TTT
1 TTT
24656925 TGTAAACAAC
Statistics
Matches: 104, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
120 104 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (120 bp):
TTTAAGAGTTCTTTTATAACTTCGATTCCTGAAAGTACTCAAGACGATCCATTCCATCGACAAAT
TTTACGAACATTCCATGCTCGAGAAATCACACCATTTGCTCTAAATAGTTTGTCA
Found at i:24657086 original size:336 final size:336
Alignment explanation
Indices: 24656464--24657140 Score: 838
Period size: 336 Copynumber: 2.0 Consensus size: 336
24656454 ATTTGTCAAA
* * * * * *
24656464 CATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTACTAAAGTCAAACCATTCCTTCGAGCA
1 CATTTAAGAGTTCTTTTATAACTTCGATTCCTGAAAGTACTAAAGACAAACCATTCCTTCGACCA
* * * *
24656529 ATTTTCTGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCTAAATAGTTTGTCATTTTGTAA
66 ATTTTCTGAACATTCCATGCTCGAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTGTAA
* * * * *
24656594 ACAACTTTTGGTCTTTAAATTAAAAAGTTATTCAAAAGAGAATTGTTTCTCTCTTTCTTCTTGGT
131 ACAACTTTTGGTATTTAAATTAAAAACTAATTCAAAAGAGAATTGTTTCTCTCTTGCTTCTTGGA
* ** * * * * *
24656659 CGAACTTTTGAGCTTGTCAAACTTTTACGAGTTTTTTTATAACTTCGGTTCCTTAAAGTACTCGA
196 CAAACTTTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAA
** ** * *
24656724 GACTCTCCATTCCATCGACAAATTTTATGAACATTCCATGCTCGGGAAATCACACCATTTGCTCT
261 GACGATCCATTCCATCGACAAATTTTACAAACATTCCATGCTAGAGAAATCACACCATTTGCTCT
*
24656789 AAATAGTTTTT
326 AAATAGTTTGT
* * * * * * *
24656800 CATTTAAGAGTTCTTTTATAACTTCGATTGCTGAGAGTATTCAAGACGATCCATTCTTTCGACCA
1 CATTTAAGAGTTCTTTTATAACTTCGATTCCTGAAAGTACTAAAGACAAACCATTCCTTCGACCA
* *
24656865 ATTTTAC-GAACATTCCATGCTTGAGAAATCGCACTATTTGCTCTAAATAGTTTGTCATTTTGTA
66 ATTTT-CTGAACATTCCATGCTCGAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTGTA
* * *** * *
24656929 AACAACTTTTTGTATTTAAATTAAAAACTAATTTACGTGAGAATTTTTTGTCTCTTGCTTCTTGG
130 AACAACTTTTGGTATTTAAATTAAAAACTAATTCAAAAGAGAATTGTTTCTCTCTTGCTTCTTGG
24656994 ACAAACTTTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCC-TAAGAGTA-TG
195 ACAAACTTTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTACT-
* * * ** *
24657057 CAAGACGATCCATTCCTTCGACCAATTTTACAAACATTCCATTCTAGAGAAATTGCAGCATTTGC
258 CAAGACGATCCATTCCATCGACAAATTTTACAAACATTCCATGCTAGAGAAATCACACCATTTGC
24657122 TCTAAATAGTTTGT
323 TCTAAATAGTTTGT
24657136 CATTT
1 CATTT
24657141 TGTAAATGAC
Statistics
Matches: 286, Mismatches: 52, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
335 4 0.01
336 281 0.98
337 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (336 bp):
CATTTAAGAGTTCTTTTATAACTTCGATTCCTGAAAGTACTAAAGACAAACCATTCCTTCGACCA
ATTTTCTGAACATTCCATGCTCGAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTGTAA
ACAACTTTTGGTATTTAAATTAAAAACTAATTCAAAAGAGAATTGTTTCTCTCTTGCTTCTTGGA
CAAACTTTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAA
GACGATCCATTCCATCGACAAATTTTACAAACATTCCATGCTAGAGAAATCACACCATTTGCTCT
AAATAGTTTGT
Found at i:24657174 original size:216 final size:215
Alignment explanation
Indices: 24656800--24661702 Score: 4413
Period size: 216 Copynumber: 22.9 Consensus size: 215
24656790 AATAGTTTTT
* * * *
24656800 CATTTAAGAGTTCTTTTATAACTTCGATTGCTGAGAGTATTCAAGACGATCCATTCTTTCGACCA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
24656865 ATTTTACGAACATTCCATGCTTGAGAAATCGCA-CTATTTGCTCTAAATAGTTTGTCATTTTGTA
65 ATTTTACGAACATTCCATGCTCGGGAAATCGCATC-ATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * *
24656929 AACAACTTTTTGTATTTAAATTAAAAACTAATTTACGTGAGAATTTTTTGTCTCTTGCTTCTTGG
129 AACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
*
24656994 ACAAACTTTCAAACTTGTCAAA
194 ACAAACTTCCAAACTTGTCAAA
*
24657016 CATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAGAGTATGCAAGACGATCCATTCCTTCGACCA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCTAA-AGTATTCAAGACGATCCATTCCTTCGACCA
* * * * * * *
24657081 ATTTTACAAACATTCCATTCTAGAGAAATTGCAGCATTTGCTCTAAATAGTTTGTCATTTTGTAA
65 ATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
** ** * * * * * *
24657146 ATGACTTTTTGAATTTAAATTAAAAACTAATGTACATGAGAATTTTTTATCTCTTGGTTCTTAGA
130 ACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
*
24657211 CAAACTTCCGAACTTGTCAAA
195 CAAACTTCCAAACTTGTCAAA
* * * *
24657232 CATTTAAGAGTTCTTCTATAACTTCGGTTCCTGAGAGTATTCAATACGATCCATTCTTTCGACCA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
24657297 ATTTTACGAACATTCCATGCTCGAGAAATCGCATCAATTGGTCTAAATAGTTTTTCATTTTGTAA
65 ATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * *
24657362 ACAA-TGTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTAT-CTTTTTG
130 ACAACT-TTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTG
* * * *
24657425 GCCGAACTTTCGAACTTGTCAAA
193 GACAAACTTCCAAACTTGTCAAA
* ** * * * *
24657448 CTTTTGCGAGTTCTTTTATAACTTCGGTTCCTCAATGTACTCAAGACTATCCATTCCTTCGAACA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCCTTCGACCA
* * ** * * *
24657513 ATTTTATGAACATCCCATGCTCGTAAAATCTCA-CTGTTTGATCTAAATAGTTTGTCATTTTGTA
65 ATTTTACGAACATTCCATGCTCGGGAAATCGCATC-ATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * *
24657577 AAAAACTTTTTGTCTTAAAATTAAAAACTAATTTACGTGAGAATTTTTTGTCTCTTGGTTCTTGG
129 AACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
** **
24657642 AGGAACTTCTGAACTTGTCAAA
194 ACAAACTTCCAAACTTGTCAAA
** *
24657664 CATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGATAATGCATTCCTTCGACCA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCTAA-AGTATTCAAGACGATCCATTCCTTCGACCA
*
24657729 ATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAA
65 ATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * *
24657794 TA-AACTTTTTTGTCCTTGAACTAAAAAC-AATTT-CGTCAGAATTGTTTCTCTCTTGGTTCTTG
130 -ACAAC-TTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
24657856 GTA-GAACTTCCAAACTTGTTATA
193 G-ACAAACTTCCAAACTTGTCAAA
* * * * * *
24657879 CTTTTATGAGTTCTTTTAGTAA-TTTGGTTTCGTAAAGTATTCAAGACAATCCATTCCTTCGAGC
1 CATTTAAGAGTTCTTTTA-TAACTTCGG-TTCCTAAAGTATTCAAGACGATCCATTCCTTCGACC
* * * ** * *
24657943 AATTTTCCAAACATTCCATTCTAAGGAAATTC-CATCATTTGGTCTAATTAGTTTTTCATTTTGT
64 AATTTTACGAACATTCCATGCTCGGGAAA-TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * * * *
24658007 AAACAACTTTTAGCCTTTGAATTAGAAACTTATTTATGTGAGAATTATTTCTCTCTAGGTTCTTA
128 AAACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
24658072 GACAAACTTCCAAACTTGTCAAA
193 GACAAACTTCCAAACTTGTCAAA
* * *
24658095 CATTTAAGAGTTCTTTTATAACTTCGGTTCC-------TT-AA-A-GATTCATTCCATCAACCAA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTTCGACCAA
** * * * ** *
24658150 TTTTTTGAATATTCCATGCTCGGGAAATCACATCATTTGGTTTAAATAGTTCATCATTTTCTAAT
66 TTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-
* * * *
24658215 A-AAC--TTT-T-TTTGAATTAAAAAC--ATTTTCGTG-GCAATTGTTTCACTCTTGGTTCTTCG
130 ACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGG
* * *
24658272 -CAGAACTTCCAAAATTGTTATA
194 ACA-AACTTCCAAACTTGTCAAA
* * * * *
24658294 C-TTTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCACTCCTTCGAGC
1 CATTT-AAGAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGACC
* * *
24658358 AATTTTTCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTG
64 AATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * *
24658423 AACAAATTTTTGTCTTTAAAGTT-AAATCTTGTTTACGTGAAAATTGTTT-TCATTCTTGGTTCT
129 AACAACTTTTTGTCTTTAAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTC--TCTTGGTTCT
* * *
24658486 TTGACGAACATT-CGAACTTGTCAAA
191 TGGACAAAC-TTCCAAACTTGTCAAA
* * * * * * *
24658511 CA-TTAACGAGTTATTTTATAACTTCGATTCTTGAGAGTGTTCAAGATGATCCATTCCTAT-GGC
1 CATTTAA-GAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCCT-TCGAC
* * * * * *
24658574 CAATTTTCCGAATATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATGGTTTGTAATTTTGT
63 CAATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * * * *
24658639 AAACAACTTATGGTCTTTAAATTACAGATTTATTTCCATGAGAATAGTTTCTCTCTTGGTTCTTG
128 AAACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
24658704 G-CAGAACTTCCGAACTTGTTAAA
193 GACA-AACTTCCAAACTTGTCAAA
* * * * *
24658727 AATTTACGAGTTCTTTTATAACTTTGGTTACTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
24658792 ATTTT-CTAAACATTCCATGCTTGGGAAATCGCATCA-TTGAGTCTAAATAGTTTTTCATTTTGT
65 ATTTTAC-GAACATTCCATGCTCGGGAAATCGCATCATTTG-GTCTAAATAGTTTGTCATTTTGT
* ** * * * * *
24658855 AAAAAAC-TTAAGTTTTTTAATTAAAAACTTATTCACGTCAGAATTGTTTCTCTGTTGGTTCTTG
128 AAACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
** * * *
24658919 GATGAATTTCAAAACTTGTAAAA
193 GACAAACTTCCAAACTTGTCAAA
* * * * * * *
24658942 CTTTTACGAGTTCTTTTATAACTTCGTTTCCTTAAAGTATTCAAGATGATCCAGTCTTTCGAGCA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGACCA
** ** *** ** *
24659007 ATTTCCCGAGTATGGAATGCTCGGGAAATCAAACCATTTGGTCTAAATAGTTTGTCATTTTGTAA
65 ATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* ** * * * *
24659072 ACAAC-TTTTGATCTTTAAATTAAAAAGTTATTTAAATAAGAATTGTTTCTCTTTTGCTGCTTGG
130 ACAACTTTTTG-TCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
24659136 CCGAACTTCCGAACTTGTCAAA
194 ACAAACTTCCAAACTTGTCAAA
* * * * *
24659158 CTTTTATGAGTT-TTTTATAACGTT-GGTTCCTTAAAGTACTCAAGACAATCCATTCCTTCGAGC
1 CATTTAAGAGTTCTTTTATAAC-TTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGACC
* * * * * *
24659221 AATTTTATGAACATTCCATGCTCGAGAAATCGCACCGTTTGCTCTAGATAGTTTGTCATTTTGTA
64 AATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
** * *
24659286 AACAACTTTTTGTCTTTAAATTAAAAACAAATTTACGTGAGAATTTTTTGTCTCTTGGTTCTTGG
129 AACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
** * *
24659351 AGGAGCTT-C---CGTGTCAAA
194 ACAAACTTCCAAACTTGTCAAA
* * * *
24659369 CATTTAAGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATGCATTCCTTTGACCA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCCTTCGACCA
* ** ** *
24659434 ATTTTACGAGCATTCCATGCTCGAAAAATCGCATCATCCGGTCTAAATAGTTTGTCATTCTGTAA
65 ATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
24659499 TA-AACTTTTTTGTCTTTGAATTAAAAA---GTTT-CGTTAGAATTGTTTCTCTCTTGGTTCTTG
130 -ACAAC-TTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
24659559 G-CAGAACTTCCAAACTTGTTATA
193 GACA-AACTTCCAAACTTGTCAAA
* * * * ** * * *
24659582 CTTTTATGAGTTCTTTTAGAAATTCGGTTTTGTAATGTATTCAAGACGATCCATTCCTTCAAGCA
1 CATTTAAGAGTTCTTTTATAACTTCGG-TTCCTAAAGTATTCAAGACGATCCATTCCTTCGACCA
* * * * * ** * *
24659647 ATTTT-CTTAAGATTCCATTCTCAGGAAATTGCATCATTTGACCTAAATAGTTTTTCTTTTTGTA
65 ATTTTAC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * * * *
24659711 AACAACTTTTGGCCTTTGAATTAAAAACTTCTTTAGGTGAGAATTGTTTCTCTCTAGGTTCTTGA
129 AACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
24659776 ACAAACTTCCAAACTTGTCAAA
194 ACAAACTTCCAAACTTGTCAAA
** * *
24659798 CATTTAAGAGTTCTTTTATAACTTCAATTCC-------TT-AA-A-GATTCATTCCATCGACCAA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTTCGACCAA
** * ** * * ** *
24659853 TTTTTTGAACATTCCATGCTTGGGAAATCATATCATTTGGTTTAAATCGTTCATCATTTTCTAAT
66 TTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-
* * * * * *
24659918 A-AACTTTCTATCTTTGAATTAAAAA--TATTTTCGTGACAATTATTTCTCTCTTGGTTCTTGG-
130 ACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * *
24659979 CAGAACTTTCGAAA-TCGTTATA
195 CA-AAC-TTCCAAACTTGTCAAA
* * * * *
24660001 C-TTTCATGAGTTCTTTTAAAACTTCGATTCCTTAAAGTGTTCAAGACGATCCACTT-CTTCGAG
1 CATTT-AAGAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCA-TTCCTTCGAC
* * **
24660064 CAATTTTCCGAACATTCCATGCTTGGGAAATTACATCATTTGGTCTAAATAGTTTGTCATTTTGT
63 CAATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * **
24660129 AAAAAACTTTTTGTCTTTAAAGTAAAAACTTGTTTACGTGAGAATTTTTTTCACTCTTACTTCTT
128 AAACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAA-TTGTTTCTCTCTTGGTTCTT
* * *
24660194 GGACGAACATCCGAACTTGTCAAA
192 GGACAAACTTCCAAACTTGTCAAA
* * * * ** *
24660218 CA-TTAACGAGTTCTTTTATAACTTCGATTCTTGAGAGTGTTCAAGGTGATCCATTCCTACGACC
1 CATTTAA-GAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCCTTCGACC
* * * * * * *
24660282 AATTTTCCAAATATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATGGTTTGTAATTTTGTA
64 AATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* ** * * * * * *
24660347 AAGAACTTTTCATCTTTAAATTAAATATTTATTTCCATGAGAATAGTTTCTTTCTTGGTTCTTGG
129 AACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * *
24660412 ACGAACTTCTAAACTTATTAAA
194 ACAAACTTCCAAACTTGTCAAA
* * * *
24660434 CATTTACGAGTTCTTTTATAACTTCAGTTACTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCCTTCGACCA
* * ** *
24660499 ATTTT-CTAAACATTCCATGCTCGAGAAATCATATCA-TTGAGTCTAAATAGTTTTTCATTTTGT
65 ATTTTAC-GAACATTCCATGCTCGGGAAATCGCATCATTTG-GTCTAAATAGTTTGTCATTTTGT
* * ** * * * * * * *
24660562 AAAAAACATTAGGTCTTTGAATTAAAAACTGATTCAGGTGGGAATTGTTTCTCTGTTTGTTCTTG
128 AAACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
** * * *
24660627 GATGAA-TTTCAGAACATGTAAAA
193 GACAAACTTCCA-AACTTGTCAAA
* ** * * * *
24660650 CTTTTTCGAGTTCTTTTATAACTTCGTTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
24660715 ATTTTCCGAACATTCCATGCTCGGGAAATCGAACCATTTGGTCTAAATAGTTTGTCATTTTGTAA
65 ATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * ** * * *
24660780 ACAACTTTTGGTAC-TTAAATTAAAAAGTCATTTAAATAAGAATTGTTTCTCTCTTGCTGCTTGG
130 ACAACTTTTTGT-CTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
24660844 CCGAACTTCCGAACTTGTCAAA
194 ACAAACTTCCAAACTTGTCAAA
* * * * * * * * *
24660866 CTTTTACGAGTTCATTTATAA-TGTCGGTTCCTTAAAGTACTCAAGACTATCCAATCTTTTGAGC
1 CATTTAAGAGTTCTTTTATAACT-TCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGACC
* * *
24660930 AATTTTATGAACATTCCATGCTCGGGAAATCGCA-CTGTTTGCTCTAAATAGTTTGTCATTTTGT
64 AATTTTACGAACATTCCATGCTCGGGAAATCGCATC-ATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * *
24660994 AAATAGCTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTTTTTTGTCTCTTGGTTCTT
128 AAACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAA-TTGTTTCTCTCTTGGTTCTT
*
24661059 GGA-AGAACTTCCGAACTTGTCAAA
192 GGACA-AACTTCCAAACTTGTCAAA
* *
24661083 CATTTAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACTA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCCTTCGACCA
* * * *
24661148 ATATTATGAACATTCCATGCTCAGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAA
65 ATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
24661213 TA-AACTTTTTTGTCTTTGAATTAAAAAC-AATTT-CGTCAGAATTGTTTCTCTCTTGGTTCTTG
130 -ACAAC-TTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
24661275 G-CAGAACTTCCAAACTTGTTATA
193 GACA-AACTTCCAAACTTGTCAAA
* * * * * * * * * *
24661298 CTTTTATGAGTTCTTTTAGAAATTCGATTTCGTAAAGTATTGAAGACAATCCATTCATTCGAGCA
1 CATTTAAGAGTTCTTTTATAACTTCG-GTTCCTAAAGTATTCAAGACGATCCATTCCTTCGACCA
* * * * * *
24661363 ATTTTCCGAACATTCCATTCTCAGGAAATTGCATCATTTGGTCTAAATAGTTTTTGATTTTGTAA
65 ATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * ** * *
24661428 ACAACTTTTGGCCTTCGAATTAAAAAATTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGA
130 ACAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
*
24661493 CAAACTTCCAAACTTGTCCAA
195 CAAACTTCCAAACTTGTCAAA
* * * *
24661514 CATTTAAGAGTTGTTTTATAACTTTGGTTCC-------TT-AA-A-GATTCATTCCATCGACCAA
1 CATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTTCGACCAA
** * * * **
24661569 TTTTTTGAATATTCGAT-CTCGGGAAATCACATCATTTGGT-TAAAATAGTTCATCATTTTGT-A
66 TTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAA
* * * * * **
24661631 ACAAACTTTTTCTATTTGAATTAAAAAC--ATTTTCATGTCAATTGTTTCTCTCTTGGTTCTTGG
130 AC-AACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
24661694 TA-AAACTTC
194 -ACAAACTTC
24661703 TGAAATTGTT
Statistics
Matches: 3828, Mismatches: 717, Indels: 298
0.79 0.15 0.06
Matches are distributed among these distances:
198 6 0.00
199 68 0.02
201 13 0.00
202 42 0.01
203 68 0.02
204 63 0.02
205 174 0.05
206 5 0.00
207 8 0.00
208 8 0.00
209 33 0.01
210 75 0.02
211 23 0.01
212 125 0.03
213 129 0.03
214 138 0.04
215 658 0.17
216 1636 0.43
217 525 0.14
218 31 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
CATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTTCGACCAA
TTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
AAACTTCCAAACTTGTCAAA
Found at i:24657354 original size:552 final size:553
Alignment explanation
Indices: 24656248--24657356 Score: 1375
Period size: 552 Copynumber: 2.0 Consensus size: 553
24656238 TTGTCAAACT
* * * * *
24656248 TTTAAGAGTTCTTTTATAACTTCGGTTCCTTAGAGTACTCAAGACTATATCGATTCGTTCGAGCA
1 TTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTACTCAAGAC-AGATCCATTCGTTCGACCA
* * * * * *
24656313 ATTTTCCGAACGTTCCATGCTTGGGAAATCGCTCTATTTGGTCTAAATAGTTTGTCATTTTGTTA
65 ATTTTACGAACATTCCATGCTTGAGAAATCGCACTATTTGCTCTAAATAGTTTGTCATTTTGTAA
* * * * * *
24656378 ACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCCTTGCTTTTTGGC
130 ACAACTTTTGGTATTTAAATTAAAAACTAATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGA
* * * * *
24656443 CGAACTTCCGAATTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTACTAAA
195 CAAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTAAA
* * * * * * *
24656508 GTCAAACCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAGTCTCACCATTTGGTCT
260 GACAAACCATTCCTTCGACCAATTTTCTAAACATTCCATGCTAGAGAAATCTCACCATTTGCTCT
** * *
24656573 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTCAAAAGAGAATT
325 AAATAGTTTGTCATTTTGTAAACAACTTTTGGAATTTAAATTAAAAACTAATTCAAAAGAGAATT
* * * * * ** * * * * *
24656638 GTTTCTCTCTTTCTTCTTGGTCGAACTTTTGAGCTTGTCAAACTTTTACGAGTTTTTTTATAACT
390 GTTTATCTCTTGCTTCTTAGACAAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTCTATAACT
* * ** *
24656703 TCGGTTCCTTAAAGTACTCGAGACTCTCCATTCCATCGACAAATTTTATGAACATTCCATGCTCG
455 TCGGTTCCTGAAAGTACTCAAGACGATCCATTCCATCGACAAATTTTACGAACATTCCATGCTCG
* *
24656768 GGAAATCACACCATTTGCTCTAAATAGTTTTTCA
520 AGAAATCACACCAATTGCTCTAAATAGTTTTTCA
* * *
24656802 TTTAAGAGTTCTTTTATAACTTCGATTGCTGAGAGTATTCAAGAC-GATCCATTCTTTCGACCAA
1 TTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTACTCAAGACAGATCCATTCGTTCGACCAA
24656866 TTTTACGAACATTCCATGCTTGAGAAATCGCACTATTTGCTCTAAATAGTTTGTCATTTTGTAAA
66 TTTTACGAACATTCCATGCTTGAGAAATCGCACTATTTGCTCTAAATAGTTTGTCATTTTGTAAA
* ** * * *
24656931 CAACTTTTTGTATTTAAATTAAAAACTAATTTACGTGAGAATTTTTTGTCTCTTGCTTCTTGGAC
131 CAACTTTTGGTATTTAAATTAAAAACTAATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGAC
* *
24656996 AAACTTTCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCC-TAAGAGTA-TGCA
196 AAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTACT-AA
* * * *
24657059 AGACGATCCATTCCTTCGACCAATTTTAC-AAACATTCCATTCTAGAGAAAT-TGCAGCATTTGC
259 AGACAAACCATTCCTTCGACCAATTTT-CTAAACATTCCATGCTAGAGAAATCT-CACCATTTGC
** * * *
24657122 TCTAAATAGTTTGTCATTTTGTAAATGACTTTTTGAATTTAAATTAAAAACTAATGT-ACATGAG
322 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGAATTTAAATTAAAAACTAAT-TCAAAAGAG
* *
24657186 AATTTTTTATCTCTTGGTTCTTAGACAAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTCTAT
386 AATTGTTTATCTCTTGCTTCTTAGACAAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTCTAT
* * * ** *
24657251 AACTTCGGTTCCTGAGAGTATTCAATACGATCCATTCTTTCGACCAATTTTACGAACATTCCATG
451 AACTTCGGTTCCTGAAAGTACTCAAGACGATCCATTCCATCGACAAATTTTACGAACATTCCATG
* * *
24657316 CTCGAGAAATCGCATCAATTGGTCTAAATAGTTTTTCA
516 CTCGAGAAATCACACCAATTGCTCTAAATAGTTTTTCA
24657354 TTT
1 TTT
24657357 TGTAAACAAT
Statistics
Matches: 467, Mismatches: 83, Indels: 12
0.83 0.15 0.02
Matches are distributed among these distances:
551 5 0.01
552 419 0.90
553 2 0.00
554 41 0.09
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (553 bp):
TTTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTACTCAAGACAGATCCATTCGTTCGACCAA
TTTTACGAACATTCCATGCTTGAGAAATCGCACTATTTGCTCTAAATAGTTTGTCATTTTGTAAA
CAACTTTTGGTATTTAAATTAAAAACTAATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGAC
AAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTAAAG
ACAAACCATTCCTTCGACCAATTTTCTAAACATTCCATGCTAGAGAAATCTCACCATTTGCTCTA
AATAGTTTGTCATTTTGTAAACAACTTTTGGAATTTAAATTAAAAACTAATTCAAAAGAGAATTG
TTTATCTCTTGCTTCTTAGACAAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTCTATAACTT
CGGTTCCTGAAAGTACTCAAGACGATCCATTCCATCGACAAATTTTACGAACATTCCATGCTCGA
GAAATCACACCAATTGCTCTAAATAGTTTTTCA
Found at i:24657518 original size:768 final size:769
Alignment explanation
Indices: 24656030--24657572 Score: 1997
Period size: 768 Copynumber: 2.0 Consensus size: 769
24656020 ACTTGTCAAA
*
24656030 CATTTAAGAGTTCTTCTATAACACCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCAACCA
1 CATTTAAGAGTTCTTCTATAACACCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCAACCA
* * *
24656095 ATTTTACGAACATTCCATGCTCGAGAAACCGCGTCATTTGGTCTAAATAATTTTTCATTTTGTAA
66 ATTTTACGAACATTCCATGCTCGAGAAACCGCCTCATTTGCTCTAAATAATTTGTCATTTTGTAA
* * * * *
24656160 ACAACGTTTAGTCTTTGAATTAGAAACTTATTTACATGAGAATTGTTTCTCTCTAGCTTCTTGGT
131 ACAACGTTTAGTATTTAAATTAAAAACTAATTTACATGAGAATTGTTTCTCTCTAGCTTCTTGGA
** * * *
24656225 CGGACTTCTGAACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTAGAGTACTCAA
196 CAAACTTCTAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAGAGTACTCAA
* * * * * * * * * * *
24656290 GACTATATCGATTCGTTCGAGCAATTTTCCGAACGTTCCATGCTTGGGAAATCGCTCTATTTGGT
261 GAC-AGATCCATTCCTTCGACCAATTTTACAAACATTCCATGCTAGAGAAATCGCGCTATTTGCT
* ** * * * *
24656355 CTAAATAGTTTGTCATTTTGTTAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAA
325 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGAATTTAAATTAAAAACTAATGTAAATGAGAA
* * * * * * * *
24656420 TTGTTTCTCCCTTGCTTTTTGGCCGAACTTCCGAATTTGTCAAACATTTACGAGTTCTTTTATAA
390 TTGTTTATCCCTTGCTTCTTAGACAAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTCTATAA
* * *
24656485 CTTTGGTTCCTTAAAGTACTAAAGTCAAACCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT
455 CTTCGGTTCCTGAAAGTACTAAAGTCAAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCT
* * * *
24656550 CGGGAAGTCTCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATT
520 CGAGAAATCGCACCAATTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATT
* * * * * *
24656615 AAAAAGTTATTCAAAAGAGAATTGTTTCTCTCTTTCTTCTTGGTCGAACTTTTGAGCTTGTCAAA
585 AAAAACTTATTCAAAAGAGAATTATTTCTCTCTATCTTCTTGGCCGAACTTTCGAACTTGTCAAA
* * * *
24656680 CTTTTACGAGTTTTTTTATAACTTCGGTTCCTTAAAGTACTCGAGACTCTCCATTCCATCGACAA
650 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTCAAAGTACTCAAGACTATCCATTCCATCGACAA
* * * *
24656745 ATTTTATGAACATTCCATGCTCGGGAAATCACACCATTTGCTCTAAATAGTTTTT
715 ATTTTATGAACATCCCATGCTCGGAAAATCACACCATTTGATCTAAATAGTTTGT
* ** * * *
24656800 CATTTAAGAGTTCTTTTATAACTTCGATTGCTGAGAGTATTCAAGACGATCCATTCTTTCGACCA
1 CATTTAAGAGTTCTTCTATAACACCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCAACCA
* * *
24656865 ATTTTACGAACATTCCATGCTTGAGAAATCGCACT-ATTTGCTCTAAATAGTTTGTCATTTTGTA
66 ATTTTACGAACATTCCATGCTCGAGAAACCGC-CTCATTTGCTCTAAATAATTTGTCATTTTGTA
* * * * * *
24656929 AACAACTTTTTGTATTTAAATTAAAAACTAATTTACGTGAGAATTTTTTGTCTCTTGCTTCTTGG
130 AACAACGTTTAGTATTTAAATTAAAAACTAATTTACATGAGAATTGTTTCTCTCTAGCTTCTTGG
24656994 ACAAACTT-TCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAGAGTA-TG
195 ACAAACTTCT-AAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAGAGTACT-
* *
24657057 CAAGAC-GATCCATTCCTTCGACCAATTTTACAAACATTCCATTCTAGAGAAATTGCAGC-ATTT
258 CAAGACAGATCCATTCCTTCGACCAATTTTACAAACATTCCATGCTAGAGAAATCGC-GCTATTT
** * *
24657120 GCTCTAAATAGTTTGTCATTTTGTAAATGACTTTTTGAATTTAAATTAAAAACTAATGTACATGA
322 GCTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGAATTTAAATTAAAAACTAATGTAAATGA
* * *
24657185 GAATTTTTTATCTCTTGGTTCTTAGACAAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTCTA
387 GAATTGTTTATCCCTTGCTTCTTAGACAAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTCTA
* * * * * *
24657250 TAACTTCGGTTCCTGAGAGTATTCAA-TACGATCCATTCTTTCGACCAATTTTAC-GAACATTCC
452 TAACTTCGGTTCCTGAAAGTACTAAAGT-CAAACCATTCCTTCGACCAATTTT-CTGAACATTCC
* *
24657313 ATGCTCGAGAAATCGCATCAATTGGTCTAAATAGTTTTTCATTTTGTAAACAA-TGTTTGGTCTT
515 ATGCTCGAGAAATCGCACCAATTGGTCTAAATAGTTTGTCATTTTGTAAACAACT-TTTGGTCTT
* * * * *
24657377 TGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTATCTTTTTGGCCGAACTTTCGAACTT
579 TAAATTAAAAACTTATTCAAAAGAGAATTATTTCTCTCTATCTTCTTGGCCGAACTTTCGAACTT
* * *
24657442 GTCAAACTTTTGCGAGTTCTTTTATAACTTCGGTTCCTCAATGTACTCAAGACTATCCATTCCTT
644 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTCAAAGTACTCAAGACTATCCATTCCAT
* * **
24657507 CGA-ACAATTTTATGAACATCCCATGCTCGTAAAATCTCACTGTTTGATCTAAATAGTTTGT
709 CGACA-AATTTTATGAACATCCCATGCTCGGAAAATCACACCATTTGATCTAAATAGTTTGT
24657568 CATTT
1 CATTT
24657573 TGTAAAAAAC
Statistics
Matches: 660, Mismatches: 105, Indels: 18
0.84 0.13 0.02
Matches are distributed among these distances:
767 3 0.00
768 424 0.64
769 4 0.01
770 228 0.35
771 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (769 bp):
CATTTAAGAGTTCTTCTATAACACCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCAACCA
ATTTTACGAACATTCCATGCTCGAGAAACCGCCTCATTTGCTCTAAATAATTTGTCATTTTGTAA
ACAACGTTTAGTATTTAAATTAAAAACTAATTTACATGAGAATTGTTTCTCTCTAGCTTCTTGGA
CAAACTTCTAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAGAGTACTCAA
GACAGATCCATTCCTTCGACCAATTTTACAAACATTCCATGCTAGAGAAATCGCGCTATTTGCTC
TAAATAGTTTGTCATTTTGTAAACAACTTTTGGAATTTAAATTAAAAACTAATGTAAATGAGAAT
TGTTTATCCCTTGCTTCTTAGACAAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTCTATAAC
TTCGGTTCCTGAAAGTACTAAAGTCAAACCATTCCTTCGACCAATTTTCTGAACATTCCATGCTC
GAGAAATCGCACCAATTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTA
AAAACTTATTCAAAAGAGAATTATTTCTCTCTATCTTCTTGGCCGAACTTTCGAACTTGTCAAAC
TTTTACGAGTTCTTTTATAACTTCGGTTCCTCAAAGTACTCAAGACTATCCATTCCATCGACAAA
TTTTATGAACATCCCATGCTCGGAAAATCACACCATTTGATCTAAATAGTTTGT
Found at i:24662141 original size:215 final size:215
Alignment explanation
Indices: 24661754--24663711 Score: 1757
Period size: 215 Copynumber: 9.1 Consensus size: 215
24661744 TTCCTTTGAG
* * * **
24661754 CAATTTTTCTAGCATTCCATGCCCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTTATTTTGT
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGCATTTTGT
* * * *
24661819 AAACAACTTTTTGTCTTTAAAGTT-AAAACTTGTTTACATGAAAATTGTTTTCACTCTTGGTTCT
65 AAACAACTTTTGGTCTTTAAA-TTAAAAACTTATTTACATGAGAATTG-TTTCTCTCTTGGTTCT
* * * *
24661883 TGGACGAACATCCGAACTTGTCAAACATTAACGAGTTCTTTTATAACTTCGATT-CTTGAGAGTG
128 TGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTGAAAGTA
24661947 TTCAAGATGATCCATTCTTACGAC
193 TTCAAGATGATCCATTCTT-CGAC
* * * * *
24661971 CAATTTTTCGAATATTCCATGCCCGGGAAATCACATCATTTGGACTAAATGGTTTGCAATTTTGT
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGC-ATTTTGT
* * * * *
24662036 -AACAACATTTGGTCTTTAAATTAAAGATTTATTTCCATGAGAATAGTTTCTCTCTTGGTTCTTG
65 AAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * *
24662100 GACGAACTTCTGAACTTGTTAAACATTTAGGAGTTCTTTTATAACTTCGATTAC-TGAGAGTATT
130 GACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTGAAAGTATT
* * *
24662164 TAAGACGATCCATTCCTTTGAC
195 CAAGATGATCCATT-CTTCGAC
* * * *
24662186 CGA-TTTTCTAAACATTCCATGCTCGGGAAATCGCATCA-GTGAGTCTAAATAGTTTTTCATTTT
1 CAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTG-GTCTAAATAG-TTTGCATTTT
* * * * * * *
24662249 GTAAAAAACTTTAGGTCTTTGAATTAAAAACTGATTCACGTGAGAATTGTTTCTCTGTTGGTTCT
63 GTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
* * * * * * * *
24662314 TGGATGAAATTCAGAACTTGTAAAACTTTTATGAGTTCTTTTGTAACTTCGTTTCCTT-AAAGTA
128 TGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTGAAAGTA
*
24662378 TTCAAGATGATCCATTCTTTCGAG
193 TTCAAGATGATCCATTC-TTCGAC
* * *
24662402 CAATTTTTCGAATATTCCATGCTCGGGAAATC-AAACTATTTGGTCTAAATAGTTTGTCATTTTG
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC-ATTTGGTCTAAATAGTTTG-CATTTTG
* * * * * *
24662466 TAAACAACTTTTGGCCTTTAAATTAAAAAGTTA-TTAAATAAGAATTGTTTCTCTCTTGCTGCTT
64 TAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
24662530 GGTCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-AGTTCCTT-AAAGTC
129 GGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGA-TTCCTTGAAAGTA
* * * *
24662593 CTCAAGATTATCCATTCCTTCAAG
193 TTCAAGATGATCCATT-CTTCGAC
* * *
24662617 TAATTTTAT-GAACATTCCATGCTCGGGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTG
1 CAATTTT-TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG-CATTTTG
* ** * * * * * *
24662681 TAAACAACTTTTTGTCAATAAACTAAAAACTAATTTACGTGAGAATTTTTTGTCTATTGGTTCTT
64 TAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
* ** * * *
24662746 GGAAGAACTTAGGAACTTGTCAAACATTTAAGAGTT-TTTTATAACTTCGGTTCC-TGAGAGTAT
129 GGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTGAAAGTAT
* * *
24662809 TCAAGACGATGCATTCCTTTGAC
194 TCAAGATGATCCATT-CTTCGAC
* * * *
24662832 CAATTTTACGAACTTTCCGTGCTCGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGT
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG-CATTTTGT
** * * * * *
24662897 AATA-AACTTTTTTTTCTTTAAATTAAAAAC-AAATT-CATCAGAATTTTTTCTTTCTTGGTTCT
65 AA-ACAAC-TTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
* * * * * * * * * *
24662959 TGG-CATAACTTCCAAACTTGTTATACATTTATGAGTTCTTTTAGAAATTCGGTTTCGT-AAAGT
128 TGGAC-GAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTGAAAGT
* ** *
24663022 ATTTAAGACAATCCATTCATTCGAG
192 ATTCAAGATGATCCATTC-TTCGAC
* * * ** * * *
24663047 CAATTTTCCGAGCATTCCATTCTAAGGAAATTGCATCATTTGGTCTATATAGTTTTTCATTTTGT
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGCATTTTGT
* * * ** *
24663112 AAACAACTTTTGGCCTTTGAATTAAAAACTTAGTTACATGAGAATTGTTTCAATCTAGGTTCTTG
65 AAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * *
24663177 GGCAAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTT-AAAG-ATT
130 GACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTGAAAGTATT
24663240 -AA-AT--TCCA----TCGAC
195 CAAGATGATCCATTCTTCGAC
* * * * * * * *
24663253 CAATTTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTTTTAAGAGTTCAT-CATTTTC
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT--TGCATTTTG
* *** * * * *
24663317 TAAAAAAAAATT-ATCTTTAAATTAAAAAC--ATTTTCGTGACAA---TTTCTCTCTTGGTTCTT
64 TAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
* * * * * * *
24663376 AGTA-GAACTTCCGAAATTGTTATAC-TTTCATGAGTTTTTTTATATCTTCGATTCCTT-AAAGT
129 -GGACGAACTTCCGAACTTGTCAAACATTT-ACGAGTTCTTTTATAACTTCGATTCCTTGAAAGT
* * *
24663438 ATTCAAGACGATCCATTCCTTCAAG
192 ATTCAAGATGATCCATT-CTTCGAC
*
24663463 CAA-TTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTGTGTCATTTTG
1 CAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG-CATTTTG
* * * * *
24663527 TAAACAACTTTTTGTCTTTAAAGTAAAAACTTGTTTACGTGAGAATTGTTTTCACTCTTGGTTCT
64 TAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTG-TTTCTCTCTTGGTTCT
* * * * *
24663592 TGGACGAGCATCCGAACTTGTCAAACATTAACGAGTTCTTTTATAACTTCGATT-CTTGAGAGTG
128 TGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTGAAAGTA
* * *
24663656 TTCAAGATGATCAATTCCTACGAA
193 TTCAAGATGATCCATT-CTTCGAC
* * *
24663680 TAATTTTTTGAACATTCCATGCTTGGGAAATC
1 CAATTTTTCGAACATTCCATGCTCGGGAAATC
24663712 ACATTGTTGA
Statistics
Matches: 1404, Mismatches: 276, Indels: 122
0.78 0.15 0.07
Matches are distributed among these distances:
199 3 0.00
200 58 0.04
201 4 0.00
202 2 0.00
203 10 0.01
205 20 0.01
206 58 0.04
207 1 0.00
208 1 0.00
209 4 0.00
210 58 0.04
211 19 0.01
213 11 0.01
214 80 0.06
215 514 0.37
216 393 0.28
217 162 0.12
218 6 0.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (215 bp):
CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGCATTTTGTA
AACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
ACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTGAAAGTATTC
AAGATGATCCATTCTTCGAC
Found at i:24664399 original size:32 final size:30
Alignment explanation
Indices: 24664353--24664413 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 30
24664343 CTAAATACAT
24664353 ATTAATATATTTATT-TACTATTTATTATTA
1 ATTAATATATTTATTGT-CTATTTATTATTA
*
24664383 ATTAATATATACTTATTGTTTATTTATTATT
1 ATTAATATAT--TTATTGTCTATTTATTATT
24664414 TTTTGAAACG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 10 0.37
32 16 0.59
33 1 0.04
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (30 bp):
ATTAATATATTTATTGTCTATTTATTATTA
Found at i:24665505 original size:30 final size:30
Alignment explanation
Indices: 24665468--24665822 Score: 287
Period size: 30 Copynumber: 11.9 Consensus size: 30
24665458 GCCAAAAGGT
** * *
24665468 CCCTAAACTTTTAAAAAATTATATTTTGAC
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
* * *
24665498 CCTTAAACTTTTCCAATATTACATTTTGAC
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
* *
24665528 CCCTAAACTTCTCCAAAATTATATTTTAAC
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
24665558 CCCTAAAC-TTTCTCAAAATTACATTTTAAC
1 CCCTAAACTTTTC-CAAAATTACATTTTAAC
* * *
24665588 CCTTAAATTTTTCCAAAATTGCATTTTAAC
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
* * * *
24665618 CCTTAAACTTTCCCAAAATCATATTTTAAC
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
*
24665648 CCCTAAAC-TTTCTCAAAATCACATTTTAACC
1 CCCTAAACTTTTC-CAAAATTACATTTTAA-C
* * * *
24665679 CCCT-AATTTTTCCATAATTGCATTTTGA-
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
* * * *
24665707 TCCTAAAC-TTACCTAAAATCACATTTTGA-
1 CCCTAAACTTTTCC-AAAATTACATTTTAAC
* * **
24665736 TCCTAAACTTTTCCAAAAATTATATTTTGGC
1 CCCTAAACTTTTCC-AAAATTACATTTTAAC
* * *
24665767 CAC-GAACTTTT-CAAAGATTACATTTTGATC
1 CCCTAAACTTTTCCAAA-ATTACATTTT-AAC
*
24665797 CCC-AAACTTTCCCAAAATTACATTTT
1 CCCTAAACTTTTCCAAAATTACATTTT
24665823 GACCGCCATA
Statistics
Matches: 265, Mismatches: 48, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
28 10 0.04
29 38 0.14
30 199 0.75
31 18 0.07
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (30 bp):
CCCTAAACTTTTCCAAAATTACATTTTAAC
Found at i:24665625 original size:90 final size:90
Alignment explanation
Indices: 24665468--24665763 Score: 325
Period size: 90 Copynumber: 3.3 Consensus size: 90
24665458 GCCAAAAGGT
* * * * * * *
24665468 CCCTAAACTTT-TAAAAAATTATATTTTGACCCTTAAACTTTTCCAATATTACATTTTGACCCCT
1 CCCTAAACTTTCT-CAAAATTACATTTTAACCCTTAAATTTTTCCAAAATTGCATTTTAACCCCT
*
24665532 AAAC-TTCTCCAAAATTATATTTTAAC
65 AAACTTTC-CCAAAATCATATTTTAAC
*
24665558 CCCTAAACTTTCTCAAAATTACATTTTAACCCTTAAATTTTTCCAAAATTGCATTTTAACCCTTA
1 CCCTAAACTTTCTCAAAATTACATTTTAACCCTTAAATTTTTCCAAAATTGCATTTTAACCCCTA
24665623 AACTTTCCCAAAATCATATTTTAAC
66 AACTTTCCCAAAATCATATTTTAAC
* * * * *
24665648 CCCTAAACTTTCTCAAAATCACATTTTAACCCCCT-AATTTTTCCATAATTGCATTTTGA-TCCT
1 CCCTAAACTTTCTCAAAATTACATTTTAA-CCCTTAAATTTTTCCAAAATTGCATTTTAACCCCT
* * * *
24665711 AAACTTACCTAAAATCACATTTTGA-
65 AAACTTTCCCAAAATCATATTTTAAC
* *
24665736 TCCTAAACTTT-TCCAAAAATTATATTTT
1 CCCTAAACTTTCT-C-AAAATTACATTTT
24665764 GGCCACGAAC
Statistics
Matches: 179, Mismatches: 22, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
87 1 0.01
88 11 0.06
89 34 0.19
90 125 0.70
91 8 0.04
ACGTcount: A:0.35, C:0.24, G:0.02, T:0.40
Consensus pattern (90 bp):
CCCTAAACTTTCTCAAAATTACATTTTAACCCTTAAATTTTTCCAAAATTGCATTTTAACCCCTA
AACTTTCCCAAAATCATATTTTAAC
Found at i:24665775 original size:59 final size:59
Alignment explanation
Indices: 24665712--24665823 Score: 138
Period size: 59 Copynumber: 1.9 Consensus size: 59
24665702 TTTGATCCTA
* *
24665712 AACTTACCTAAA-ATCACATTTTGAT-CCTAAACTTTTCCAAAAATTATATTTTGGCCACG
1 AACTTACC-AAAGATCACATTTTGATCCCCAAAC-TTTCCAAAAATTACATTTTGGCCACG
** * *
24665771 AACTTTTCAAAGATTACATTTTGATCCCCAAACTTTCCCAAAATTACATTTTG
1 AACTTACCAAAGATCACATTTTGATCCCCAAACTTTCCAAAAATTACATTTTG
24665824 ACCGCCATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 3 0.07
59 36 0.80
60 6 0.13
ACGTcount: A:0.35, C:0.22, G:0.06, T:0.37
Consensus pattern (59 bp):
AACTTACCAAAGATCACATTTTGATCCCCAAACTTTCCAAAAATTACATTTTGGCCACG
Found at i:24671118 original size:17 final size:17
Alignment explanation
Indices: 24671097--24671153 Score: 73
Period size: 18 Copynumber: 3.4 Consensus size: 17
24671087 AAAAATAAAT
24671097 AAAAAAGGAAAAGAAAGG
1 AAAAAAGGAAAAGAAA-G
24671115 AAAAAAGG-AAAGAAAG
1 AAAAAAGGAAAAGAAAG
*
24671131 -AAAAAGGAAAAAAATAG
1 AAAAAAGGAAAAGAA-AG
24671148 AAAAAA
1 AAAAAA
24671154 ATAGGAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
15 7 0.20
16 6 0.17
17 9 0.26
18 13 0.37
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (17 bp):
AAAAAAGGAAAAGAAAG
Found at i:24671121 original size:8 final size:8
Alignment explanation
Indices: 24671097--24671143 Score: 53
Period size: 8 Copynumber: 5.8 Consensus size: 8
24671087 AAAAATAAAT
24671097 AAAAAAGG
1 AAAAAAGG
24671105 AAAAGAAAGG
1 -AAA-AAAGG
24671115 AAAAAAGG
1 AAAAAAGG
24671123 AAAGAAA-G
1 AAA-AAAGG
24671131 -AAAAAGG
1 AAAAAAGG
24671138 AAAAAA
1 AAAAAA
24671144 ATAGAAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
6 3 0.09
7 3 0.09
8 14 0.41
9 9 0.26
10 5 0.15
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (8 bp):
AAAAAAGG
Found at i:24671149 original size:21 final size:20
Alignment explanation
Indices: 24671097--24671166 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 20
24671087 AAAAATAAAT
* *
24671097 AAAAAAGGAAAAGAAAGGAA
1 AAAAAAAGAAAAAAAAGGAA
24671117 AAAAGGAAAGAAAGAAAAAGGAA
1 AAAA--AAAGAAA-AAAAAGGAA
*
24671140 AAAAATAGAAAAAAATAGGAA
1 AAAAAAAGAAAAAAA-AGGAA
24671161 AAAAAA
1 AAAAAA
24671167 GGAGAGGTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
20 8 0.19
21 16 0.38
22 6 0.14
23 12 0.29
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (20 bp):
AAAAAAAGAAAAAAAAGGAA
Found at i:24671169 original size:10 final size:10
Alignment explanation
Indices: 24671097--24671169 Score: 76
Period size: 10 Copynumber: 6.9 Consensus size: 10
24671087 AAAAATAAAT
24671097 AAAAAAGGAA
1 AAAAAAGGAA
*
24671107 AAGAAAGGAA
1 AAAAAAGGAA
*
24671117 AAAAGGAAAGAA
1 AAAA--AAGGAA
24671129 AGAAAAAGGAA
1 A-AAAAAGGAA
24671140 AAAAATA-GAA
1 AAAAA-AGGAA
24671150 AAAAATAGGAA
1 AAAAA-AGGAA
24671161 AAAAAAGGA
1 AAAAAAGGA
24671170 GAGGTCAAGG
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
10 30 0.56
11 15 0.28
12 6 0.11
13 3 0.06
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (10 bp):
AAAAAAGGAA
Found at i:24672066 original size:8 final size:8
Alignment explanation
Indices: 24672024--24672067 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
24672014 TTTCTTGGAC
24672024 AAAAATAA
1 AAAAATAA
*
24672032 ATAAATAA
1 AAAAATAA
* *
24672040 ATAAGATAG
1 A-AAAATAA
24672049 AAAAATAA
1 AAAAATAA
24672057 AAAAATAA
1 AAAAATAA
24672065 AAA
1 AAA
24672068 TAATTGGGTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
8 24 0.83
9 5 0.17
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.16
Consensus pattern (8 bp):
AAAAATAA
Found at i:24675682 original size:19 final size:19
Alignment explanation
Indices: 24675658--24675700 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
24675648 AAACATAAAT
24675658 TAAATATAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
24675677 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
24675696 TAAAT
1 TAAAT
24675701 CCTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:24676723 original size:98 final size:99
Alignment explanation
Indices: 24676533--24677185 Score: 616
Period size: 98 Copynumber: 6.6 Consensus size: 99
24676523 GCTGAGAAAA
* * * * ** *
24676533 CATGAAGATTTGAAGGGAAAGGTTGAGGCCCCAATGGCGAACCTAGTACCTTAGAAGATGTGAT-
1 CATGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACATTAGAAGATGTGATA
* * * *
24676597 GGGAAGGATTGAGGCTGCAACAGTGAATCCGATAC
66 GGAAAGG-TTGAGGCCGCAACGGCGAATCCGATAC
* *
24676632 CATGAA-ATGTGATGGGAAAGGTTGAGGCCGCAATGGCGAACCCAGTACATTAGAAGATGTGATA
1 CATGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACATTAGAAGATGTGATA
* * *
24676696 GG-AAGGATTGAGACCGCAATGGCGAATCCGGTAC
66 GGAAAGG-TTGAGGCCGCAACGGCGAATCCGATAC
* * * * *
24676730 CATGCA-ATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCTGGTACCTCAGAAGATGTGATG
1 CATGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACATTAGAAGATGTGATA
* **
24676794 GGAAAGATTGAGGCCGCAACAACGAATCC-AGTAC
66 GGAAAGGTTGAGGCCGCAACGGCGAATCCGA-TAC
* * * * *
24676828 GATGAA-ATGTGATGGGAAAGGTTGAGGCCGCAATGGTGAACCCGGTACCA-T-GAAAATTTGA-
1 CATGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTA-CATTAGAAGATGTGAT
* * * * *
24676889 AGGGAAAGGGTAAGGCCGTAATGGCGAA-CCCAGTAC
65 A-GGAAAGGTTGAGGCCGCAACGGCGAATCCGA-TAC
* * * *
24676925 CTTAGAAGATGTGATGGG-AAGGATTGAGGCCACAACGGCGAATCCGATACCA-T-GAA-ATGTG
1 CAT-GAAGATGTGATGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGGTA-CATTAGAAGATGTG
* * * *
24676986 ATGGGAAAGGTTGAGGCTGCAATGGCGAACCCGATAC
63 ATAGGAAAGGTTGAGGCCGCAACGGCGAATCCGATAC
* * * * * *
24677023 CATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGGTGAACTCGGTACCTTAAAAGATGTGATA
1 CATGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACATTAGAAGATGTGATA
* * *
24677088 GGAAAGGTTGAGGCCACAACGGCGAACCCGGTAC
66 GGAAAGGTTGAGGCCGCAACGGCGAATCCGATAC
* ** *
24677122 CATGAAGATATGAAAGGAAAGGTTGAGGCCGCAACGGAGAACCCGGTATC-TTAGAAGATGTGAT
1 CATGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTA-CATTAGAAGATGTGAT
24677186 GTGACAGGAA
Statistics
Matches: 464, Mismatches: 74, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
96 3 0.01
97 67 0.14
98 245 0.53
99 148 0.32
100 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.32, T:0.18
Consensus pattern (99 bp):
CATGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACATTAGAAGATGTGATA
GGAAAGGTTGAGGCCGCAACGGCGAATCCGATAC
Found at i:24676912 original size:49 final size:49
Alignment explanation
Indices: 24676533--24677169 Score: 531
Period size: 50 Copynumber: 13.0 Consensus size: 49
24676523 GCTGAGAAAA
* * * * **
24676533 CATGAAGATTTGAAGGGAAAGGTTGAGGCCCCAATGGCGAACCTAGTAC
1 CATGAAAATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTAC
* * * * * * * *
24676582 CTTAGAAGATGTGATGGG-AAGGATTGAGGCTGCAACAGTGAATCCGATAC
1 CAT-GAAAATGTGAAGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGGTAC
* * *
24676632 CATG-AAATGTGATGGGAAAGGTTGAGGCCGCAATGGCGAACCCAGTA-
1 CATGAAAATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTAC
* * * *
24676679 CATTAGAAGATGTGATA-GG-AAGGATTGAGACCGCAATGGCGAATCCGGTAC
1 CA-T-GAAAATGTGA-AGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGGTAC
* * *
24676730 CATG-CAATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCTGGTAC
1 CATGAAAATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTAC
* * * ** * *
24676778 C-TCAGAAGATGTGATGGGAAAGATTGAGGCCGCAACAACGAATCCAGTAC
1 CAT--GAAAATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTAC
* * * *
24676828 GATG-AAATGTGATGGGAAAGGTTGAGGCCGCAATGGTGAACCCGGTAC
1 CATGAAAATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTAC
* * * * * *
24676876 CATGAAAATTTGAAGGGAAAGGGTAAGGCCGTAATGGCGAACCCAGTAC
1 CATGAAAATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTAC
* * * * * *
24676925 CTTAGAAGATGTGATGGG-AAGGATTGAGGCCACAACGGCGAATCCGATAC
1 CAT-GAAAATGTGAAGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGGTAC
* * * *
24676975 CATG-AAATGTGATGGGAAAGGTTGAGGCTGCAATGGCGAACCCGATAC
1 CATGAAAATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTAC
* * * *
24677023 CATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGGTGAACTCGGTAC
1 CATGAAAATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTAC
* * *
24677072 CTTAAAAGATGTGATA-GGAAAGGTTGAGGCCACAACGGCGAACCCGGTAC
1 CATGAAA-ATGTGA-AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTAC
* * * *
24677122 CATGAAGATATGAAAGGAAAGGTTGAGGCCGCAACGGAGAACCCGGTA
1 CATGAAAATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTA
24677170 TCTTAGAAGA
Statistics
Matches: 468, Mismatches: 97, Indels: 46
0.77 0.16 0.08
Matches are distributed among these distances:
47 3 0.01
48 141 0.30
49 147 0.31
50 173 0.37
51 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.32, T:0.17
Consensus pattern (49 bp):
CATGAAAATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTAC
Found at i:24676932 original size:147 final size:148
Alignment explanation
Indices: 24676533--24677169 Score: 664
Period size: 147 Copynumber: 4.3 Consensus size: 148
24676523 GCTGAGAAAA
* * ** * * * *
24676533 CATGAAGATTTGA-AGGGAAAGGTTGAGGCCCCAATGGCGAACCTAGTACCTTAGAAGATGTGAT
1 CATGAAGATGTGATA-GGAAAGGTTGAGGCCGCAATGGCGAACCCGGTACCAT-GAAAATATGAA
* * * * * * *
24676597 GGG-AAGGATTGAGGCTGCAACAGTGAATCCGATACCAT-GAA-ATGTGATGGGAAAGGTTGAGG
64 GGGAAAGG-TTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTGATGGGAAAGATTGAGG
* *
24676659 CCGCAATGGCGAACCCAGTA-
128 CCACAACGGCGAACCCAGTAC
* * * *
24676679 CATTAGAAGATGTGATAGG-AAGGATTGAGACCGCAATGGCGAATCCGGTACCATG-CAATGTGA
1 CA-T-GAAGATGTGATAGGAAAGG-TTGAGGCCGCAATGGCGAACCCGGTACCATGAAAATATGA
* * *
24676742 TGGGAAAGGTTGAGGCCGCAACGGCGAACCTGGTACCTCAGAAGATGTGATGGGAAAGATTGAGG
63 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTGATGGGAAAGATTGAGG
* ** *
24676807 CCGCAACAACGAATCCAGTAC
128 CCACAACGGCGAACCCAGTAC
* * * *
24676828 GATGAA-ATGTGATGGGAAAGGTTGAGGCCGCAATGGTGAACCCGGTACCATGAAAATTTGAAGG
1 CATGAAGATGTGATAGGAAAGGTTGAGGCCGCAATGGCGAACCCGGTACCATGAAAATATGAAGG
* * * * * *
24676892 GAAAGGGTAAGGCCGTAATGGCGAACCCAGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCCA
66 GAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTGATGGGAAAGATTGAGGCCA
*
24676957 CAACGGCGAATCC-GATAC
131 CAACGGCGAACCCAG-TAC
* * * *
24676975 CATGAA-ATGTGATGGGAAAGGTTGAGGCTGCAATGGCGAACCCGATACCATGAAGATATGAAGG
1 CATGAAGATGTGATAGGAAAGGTTGAGGCCGCAATGGCGAACCCGGTACCATGAAAATATGAAGG
* * * * *
24677039 GAAAGGTTGAGGCCGCAACGGTGAACTCGGTACCTTAAAAGATGTGATAGGAAAGGTTGAGGCCA
66 GAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTGATGGGAAAGATTGAGGCCA
*
24677104 CAACGGCGAACCCGGTAC
131 CAACGGCGAACCCAGTAC
* * * *
24677122 CATGAAGATATGAAAGGAAAGGTTGAGGCCGCAACGGAGAACCCGGTA
1 CATGAAGATGTGATAGGAAAGGTTGAGGCCGCAATGGCGAACCCGGTA
24677170 TCTTAGAAGA
Statistics
Matches: 412, Mismatches: 66, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
146 72 0.17
147 231 0.56
148 107 0.26
149 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.32, T:0.17
Consensus pattern (148 bp):
CATGAAGATGTGATAGGAAAGGTTGAGGCCGCAATGGCGAACCCGGTACCATGAAAATATGAAGG
GAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTGATGGGAAAGATTGAGGCCA
CAACGGCGAACCCAGTAC
Found at i:24677366 original size:59 final size:58
Alignment explanation
Indices: 24677239--24677595 Score: 289
Period size: 59 Copynumber: 6.1 Consensus size: 58
24677229 GTCAAAAGGT
* * * **
24677239 CCCTAAAC-TTTCTAAAAATTATATTTTGA-CCCTAAACTTTTCCAAAATTACATTTCGA
1 CCCTAAACTTTTC-CAAAATTACATTTTAACCCCTAAAC-TTTCCAAAATTACATTTTAA
* *
24677297 CCCTTGAACTTTTCCAAAATTATATTTTAACCCCTAAACTTTCTCAAAATTACATTTTAA
1 CCC-TAAACTTTTCCAAAATTACATTTTAACCCCTAAACTTTC-CAAAATTACATTTTAA
* * *
24677357 CCCTAAACTTTTCTAAAATTGCATTTTAACCCTTAAACTTTCCTAAAATTACATTTTAA
1 CCCTAAACTTTTCCAAAATTACATTTTAACCCCTAAACTTTCC-AAAATTACATTTTAA
* ** * * *
24677416 CCCCTAAAC-TTTCTCAAAATCACATTTTAACCCCCTAATTTTTCCATAATTGCATTTTGA
1 -CCCTAAACTTTTC-CAAAATTACATTTTAA-CCCCTAAACTTTCCAAAATTACATTTTAA
* * * * * **
24677476 TCCT-AA-TTTTACCTAAAATCACATTTTGA-TCCTAAACTTTCCCAAAATTATATTTTGG
1 CCCTAAACTTTT-CC-AAAATTACATTTTAACCCCTAAACTTT-CCAAAATTACATTTTAA
* * * *
24677534 CCATGAACTTTT-CAAAGATTACATTTGAATCCCC-AAACTTTCCCAAAATTACATTTTGA
1 CCCTAAACTTTTCCAAA-ATTACATTTTAA-CCCCTAAACTTT-CCAAAATTACATTTTAA
24677593 CCC
1 CCC
24677596 CCATATTTGC
Statistics
Matches: 245, Mismatches: 37, Indels: 33
0.78 0.12 0.10
Matches are distributed among these distances:
57 11 0.04
58 35 0.14
59 120 0.49
60 68 0.28
61 11 0.04
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.38
Consensus pattern (58 bp):
CCCTAAACTTTTCCAAAATTACATTTTAACCCCTAAACTTTCCAAAATTACATTTTAA
Found at i:24677390 original size:89 final size:89
Alignment explanation
Indices: 24677239--24677596 Score: 343
Period size: 89 Copynumber: 4.0 Consensus size: 89
24677229 GTCAAAAGGT
* * * * *
24677239 CCCTAAACTTTCTAAAAATTATATTTTGACCCTAAACTTTTCCAAAATTACATTTCGACCCTTGA
1 CCCTAAACTTTCTCAAAATTACATTTTAACCCTAAACTTTTCCAAAATTACATTTCAACCCTTAA
*
24677304 ACTTTTCC-AAAATTATATTTTAAC
66 AC-TTTCCTAAAATTACATTTTAAC
* * *
24677328 CCCTAAACTTTCTCAAAATTACATTTTAACCCTAAACTTTTCTAAAATTGCATTTTAACCCTTAA
1 CCCTAAACTTTCTCAAAATTACATTTTAACCCTAAACTTTTCCAAAATTACATTTCAACCCTTAA
24677393 ACTTTCCTAAAATTACATTTTAAC
66 ACTTTCCTAAAATTACATTTTAAC
* * * * ** *
24677417 CCCTAAACTTTCTCAAAATCACATTTTAACCCCCT-AATTTTTCCATAATTGCATTTTGATCC-T
1 CCCTAAACTTTCTCAAAATTACATTTTAA--CCCTAAACTTTTCCAAAATTACATTTCAACCCTT
* * *
24677480 -AATTTTACCTAAAATCACATTTTGA-
64 AAACTTT-CCTAAAATTACATTTTAAC
* * * ** * * * *
24677505 TCCTAAACTTTCCCAAAATTATATTTTGGCCATGAACTTTT-CAAAGATTACATTTGAATCCC-C
1 CCCTAAACTTTCTCAAAATTACATTTTAACCCTAAACTTTTCCAAA-ATTACATTTCAA-CCCTT
* *
24677568 AAACTTTCCCAAAATTACATTTTGAC
64 AAACTTTCCTAAAATTACATTTTAAC
24677594 CCC
1 CCC
24677597 CATATTTGCC
Statistics
Matches: 224, Mismatches: 36, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
86 6 0.03
87 15 0.07
88 51 0.23
89 126 0.56
90 22 0.10
91 4 0.02
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.38
Consensus pattern (89 bp):
CCCTAAACTTTCTCAAAATTACATTTTAACCCTAAACTTTTCCAAAATTACATTTCAACCCTTAA
ACTTTCCTAAAATTACATTTTAAC
Found at i:24677598 original size:30 final size:30
Alignment explanation
Indices: 24677239--24677620 Score: 282
Period size: 30 Copynumber: 12.9 Consensus size: 30
24677229 GTCAAAAGGT
** *
24677239 CCCTAAACTTTCTAAAAATTATATTTTGA-
1 CCCTAAACTTTCCCAAAATTACATTTTGAC
* *
24677268 CCCTAAACTTTTCCAAAATTACATTTCGAC
1 CCCTAAACTTTCCCAAAATTACATTTTGAC
* * * * *
24677298 CCTTGAACTTTTCCAAAATTATATTTTAAC
1 CCCTAAACTTTCCCAAAATTACATTTTGAC
* *
24677328 CCCTAAACTTTCTCAAAATTACATTTT-AA
1 CCCTAAACTTTCCCAAAATTACATTTTGAC
* * * *
24677357 CCCTAAACTTTTCTAAAATTGCATTTTAAC
1 CCCTAAACTTTCCCAAAATTACATTTTGAC
* * *
24677387 CCTTAAACTTTCCTAAAATTACATTTTAAC
1 CCCTAAACTTTCCCAAAATTACATTTTGAC
* * *
24677417 CCCTAAACTTTCTCAAAATCACATTTTAACC
1 CCCTAAACTTTCCCAAAATTACATTTTGA-C
* * * *
24677448 CCCT-AATTTTTCCATAATTGCATTTTGA-
1 CCCTAAACTTTCCCAAAATTACATTTTGAC
* * * *
24677476 TCCT-AATTTTACCTAAAATCACATTTTGA-
1 CCCTAAACTTT-CCCAAAATTACATTTTGAC
* * *
24677505 TCCTAAACTTTCCCAAAATTATATTTTG-G
1 CCCTAAACTTTCCCAAAATTACATTTTGAC
* * *
24677534 CCATGAACTTT-TCAAAGATTACA-TTTGAATC
1 CCCTAAACTTTCCCAAA-ATTACATTTTG-A-C
24677565 CCC-AAACTTTCCCAAAATTACATTTTGAC
1 CCCTAAACTTTCCCAAAATTACATTTTGAC
* * * *
24677594 CCCCATA-TTTGCCAAAATTATATTTTG
1 CCCTAAACTTTCCCAAAATTACATTTTG
24677621 GCTCCGTAAT
Statistics
Matches: 283, Mismatches: 57, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
28 17 0.06
29 114 0.40
30 137 0.48
31 15 0.05
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.39
Consensus pattern (30 bp):
CCCTAAACTTTCCCAAAATTACATTTTGAC
Found at i:24679317 original size:217 final size:214
Alignment explanation
Indices: 24678506--24679597 Score: 1046
Period size: 216 Copynumber: 5.1 Consensus size: 214
24678496 TTTCGACACA
** * * * *
24678506 CATCATTTGGTCTAAACGGTTTGTAATTTTGTAAACAACTTTTGGTCTTTAAATTAAAGATTTAT
1 CATCATTT-GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTAAT
* * * *
24678571 TTCCATGAGAATAGTTTCTCTCTTTGTTTTTGGATGAACTTCCGAACTTGTTAAACATTTACGAG
65 TTACATGAGAATTGTTTCTCTCTTTGTTCTTGGA-GAACTTCCGAACTTGTCAAACATTTACGAG
* * * * * *
24678636 TTCTTTTATAACTTCGGTTACTGAGAGTATTCAAGACGAT-C---CCTTCGACCAATTTTCTAAA
129 TTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTATGAA
* *
24678697 CATTCCATGCTTGGGAAATCA
194 CATTCCATGCTCGGGAAATCG
* * *
24678718 CATCA-TTGAATCTAAATAGTTTTTCATTTTGTGAAA-AACTTTAGGTCTTTGAATTAAAAACTA
1 CATCATTTG--TCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTAAATTAAAAACTA
* * * * * * *
24678781 ATTCACATGAGAATTGTTTCTCTGC-TGGTTGTTGGAAGAATTTCAGAACTTGTAAAACTTTTAC
63 ATTTACATGAGAATTGTTTCTCT-CTTTGTTCTTGG-AGAACTTCCGAACTTGTCAAACATTTAC
* *
24678845 GAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATATTT
126 GAGTTCTTTTATAACTTCAG-TTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT-TTT
*
24678909 -CGAACATTCCATGCTCGGGAAATCG
189 ATGAACATTCCATGCTCGGGAAATCG
* * * * *
24678934 AATCATTTGGTATAAATAGTTTGTCCTTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTAT
1 CATCATTT-GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTAAT
* * * * * * *
24678999 TTAAATAAGAATTGTTTCTCTC-TTGCTTTTTGGCCGAACTTTCGAACTTGTCAAACGTTTTCGA
65 TTACATGAGAATTGTTTCTCTCTTTG-TTCTTGG-AGAACTTCCGAACTTGTCAAACATTTACGA
* * * * *
24679063 GTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACTATCCATTCCTTCAAGCAATTTTATGA
128 GTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTATGA
24679128 ACATTCCATGCTCGGGAAATCG
193 ACATTCCATGCTCGGGAAATCG
* * * **
24679150 CATCGTTTG-CTCAATCTAGTTTGTCATTTTGTAAACAATTTTTTTTTCTTTAAATTAAAAACTA
1 CATCATTTGTCT-AA-ATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTAAATTAAAAACTA
* * * *
24679214 ATTTACGTGAGAATTTTTTGTCTCTTTGTTCTTGGAGGAACTTCCGAACTTGTCAAACATTTAGG
63 ATTTACATGAGAATTGTTTCTCTCTTTGTTCTTGGA-GAACTTCCGAACTTGTCAAACATTTACG
* * * * *
24679279 AGTTCTTTTATAACTTCAGTTCCTGAGAGTATTCAAGACGATGCATTCTTTCTACCAATTTTATG
127 AGTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTATG
*
24679344 AACATTTCATGCTCGGGAAATCG
192 AACATTCCATGCTCGGGAAATCG
* * * * ** * * *
24679367 TATCATTCAGTCTAAATAGTTTGTCACTTCGTAATA-AACTTTATTATCTATGACTTAAAGAA--
1 CATCATT-TGTCTAAATAGTTTGTCATTTTGTAA-ACAACTTT-TGGTCTTTAAATTAAA-AACT
* * * * * * * * * *
24679429 AATTT-CGTCAGAATTGTTTCTCTCTTGGTTCATGGCAGAACTTTCAAACTTGTTATACTTTTAT
62 AATTTACATGAGAATTGTTTCTCTCTTTGTTCTTGG-AGAACTTCCGAACTTGTCAAACATTTAC
* * * *
24679493 GAGTTCTTTTAGAAATTCAGTTTC-GTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
126 GAGTTCTTTTATAACTTCAGTTCCTG-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTA
* ** *
24679557 TGAACATTCCATTCTCAAGAAATTG
190 TGAACATTCCATGCTCGGGAAATCG
*
24679582 CTTCATTTGGTCTAAA
1 CATCATTT-GTCTAAA
24679598 CGTCATCTTC
Statistics
Matches: 727, Mismatches: 123, Indels: 57
0.80 0.14 0.06
Matches are distributed among these distances:
210 1 0.00
211 3 0.00
212 134 0.18
213 6 0.01
214 2 0.00
215 143 0.20
216 238 0.33
217 188 0.26
218 10 0.01
219 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (214 bp):
CATCATTTGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTAATT
TACATGAGAATTGTTTCTCTCTTTGTTCTTGGAGAACTTCCGAACTTGTCAAACATTTACGAGTT
CTTTTATAACTTCAGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTATGAACA
TTCCATGCTCGGGAAATCG
Found at i:24680285 original size:49 final size:50
Alignment explanation
Indices: 24680219--24680346 Score: 147
Period size: 49 Copynumber: 2.5 Consensus size: 50
24680209 TTGATTTAAA
24680219 GATGCAAACTTTAACTAACATGAGAGTTA-TATAATGCATGAT-AGGA-TTAT
1 GATGCAAA-TTTAACTAACATGAGAGTTACT-TAATGCATG-TCAGGATTTAT
* **
24680269 GATGCATATTTAACTAACATGTA-AGTTACTTAATGCATGTCATTATTTAT
1 GATGCAAATTTAACTAACATG-AGAGTTACTTAATGCATGTCAGGATTTAT
*
24680319 GATGCAAACTTAACTAATCATGAGAGTT
1 GATGCAAATTTAACTAA-CATGAGAGTT
24680347 GATGGATGTC
Statistics
Matches: 67, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
48 1 0.01
49 29 0.43
50 29 0.43
51 8 0.12
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.35
Consensus pattern (50 bp):
GATGCAAATTTAACTAACATGAGAGTTACTTAATGCATGTCAGGATTTAT
Found at i:24680323 original size:50 final size:50
Alignment explanation
Indices: 24680193--24680346 Score: 147
Period size: 50 Copynumber: 3.0 Consensus size: 50
24680183 AACTAATGGA
* * *
24680193 TTACTAAATGCATGAC-TTGATTTAAAGATGCAAACTTTAACTAACATGAGAG
1 TTACTTAATGCATGTCATT-ATTT-ATGATGCAAA-TTTAACTAACATGAGAG
** *
24680245 TTA-TATAATGCATGAT-AGGA-TTATGATGCATATTTAACTAACATGTA-AG
1 TTACT-TAATGCATG-TCATTATTTATGATGCAAATTTAACTAACATG-AGAG
*
24680294 TTACTTAATGCATGTCATTATTTATGATGCAAACTTAACTAATCATGAGAG
1 TTACTTAATGCATGTCATTATTTATGATGCAAATTTAACTAA-CATGAGAG
24680345 TT
1 TT
24680347 GATGGATGTC
Statistics
Matches: 83, Mismatches: 10, Indels: 19
0.74 0.09 0.17
Matches are distributed among these distances:
48 1 0.01
49 29 0.35
50 30 0.36
51 11 0.13
52 12 0.14
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.36
Consensus pattern (50 bp):
TTACTTAATGCATGTCATTATTTATGATGCAAATTTAACTAACATGAGAG
Found at i:24680572 original size:17 final size:17
Alignment explanation
Indices: 24680541--24680573 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
24680531 CAAACACTTA
24680541 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
24680558 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
24680574 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:24683013 original size:26 final size:23
Alignment explanation
Indices: 24682952--24683013 Score: 61
Period size: 27 Copynumber: 2.5 Consensus size: 23
24682942 TTTTTTTTGC
24682952 TTCTTTTTTTTAAACTTCGAATT
1 TTCTTTTTTTTAAACTTCGAATT
* *
24682975 TTCTTTGATTTTTCAATATTTCGATTT
1 TTCTTT--TTTTT-AA-ACTTCGAATT
24683002 TTCTTTTCTTTT
1 TTCTTTT-TTTT
24683014 TTTTCACTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
23 6 0.19
25 6 0.19
26 6 0.19
27 14 0.44
ACGTcount: A:0.16, C:0.13, G:0.05, T:0.66
Consensus pattern (23 bp):
TTCTTTTTTTTAAACTTCGAATT
Found at i:24684302 original size:51 final size:51
Alignment explanation
Indices: 24684241--24684378 Score: 156
Period size: 50 Copynumber: 2.7 Consensus size: 51
24684231 TGCATGACTT
*
24684241 GATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATAATGCATGATAG
1 GATTT-ATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATGATAG
* * * *
24684293 GATTTATGATGCATA-TTTAACTAACATGTA-AGTTACTTAATGCATGTTAT
1 GATTTATGATGCAAACTTTAACTAACATG-AGAGTTACATAATGCATGATAG
* * *
24684343 TATTTAGGATGCAAAC-TTAACAAATCATGAGAGTTA
1 GATTTATGATGCAAACTTTAACTAA-CATGAGAGTTA
24684379 ATGGATGTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
50 50 0.68
51 18 0.25
52 5 0.07
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.35
Consensus pattern (51 bp):
GATTTATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATGATAG
Found at i:24685313 original size:161 final size:162
Alignment explanation
Indices: 24685009--24685323 Score: 452
Period size: 161 Copynumber: 2.0 Consensus size: 162
24684999 AACATTTGAG
* * ** * *
24685009 TTCTTTTCTATCTTTGGTTCCTTAAAGTATTCAAGATGATCCATTTCGTCGAGAAATTTTCTAAA
1 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCGTCGAGAAATTTCCTAAA
* * *
24685074 CATTCCATGCTCGGGAAATCGCAACATTTTGTCTAAATAGTTTTTCATTTTGTAAACAACATTTG
66 CATGCAATGCTCGGGAAATCGCAACATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACATTTG
*
24685139 GTCTTTGAATTAAAAACTTATTTACTTAAGAA
131 GTCTTTAAATTAAAAACTTATTTACTTAAGAA
* * * *
24685171 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGTAATTTCCTGAG
1 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCGTCGAGAAATTTCCTAAA
* * * *
24685236 CGTGGAATGCTCGGG-AATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTG
66 CATGCAATGCTCGGGAAATCGCAACATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACATTTG
*
24685300 GTCTTTAAATTAAAAATTTATTTA
131 GTCTTTAAATTAAAAACTTATTTA
24685324 AATGAGAATT
Statistics
Matches: 134, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
161 68 0.51
162 66 0.49
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (162 bp):
TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCGTCGAGAAATTTCCTAAA
CATGCAATGCTCGGGAAATCGCAACATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACATTTG
GTCTTTAAATTAAAAACTTATTTACTTAAGAA
Found at i:24685544 original size:214 final size:215
Alignment explanation
Indices: 24685171--24686237 Score: 1143
Period size: 214 Copynumber: 5.0 Consensus size: 215
24685161 TACTTAAGAA
* * * * * * *
24685171 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGTAATTTCCTGAG
1 TTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACTATCCATTCCTTCGAGCAATTTTCTAAA
* *** *
24685236 CGTGGAATGCTCGGG-AATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTG
66 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTG
* *
24685300 GTCTTTAAATTAAAAATTTATTTAAATGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTCCG
130 GTCTTTAAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCG
*
24685365 AACTTGTCAAACTTTTACGAG
195 AACTTGTCAAACATTTACGAG
* * *
24685386 TTCTTTTATAACTTCGGTTCCTTAAAGTACTCAATACTATCCATTTCTTCGAGCAATTTTCTGAA
1 TTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACTATCCATTCCTTCGAGCAATTTTCTAAA
* * *
24685451 CATTCTACGCTCGGGAAACCGCA-CTATTTGGTCTAAATAG-TGTCATTTTGTAAACAACTTTTG
66 CATTCCATGCTCGGGAAATCGCATC-ATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTG
* * *
24685514 GTCTTTAAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCCTTCCTTCTTGG-CTGAACTTTC
130 GTCTTTAAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCTCTTGCTTCTTGGAC-GAACTTCC
24685578 GAACTTGTCAAACATTTACGAG
194 GAACTTGTCAAACATTTACGAG
24685600 TTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACCATATCCATTCCTTCGAGCAATTTTCTA
1 TTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGA-C-TATCCATTCCTTCGAGCAATTTTCTA
** * * * * *
24685665 AACATTCCATGCTCAAGAAACCGTA-CTATTTGGTCCAAATAGTTTGTTATTTTGCAAACAACTT
64 AACATTCCATGCTCGGGAAATCGCATC-ATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTT
* * * *
24685729 TTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGTCGAATTT
127 TTGGTCTTTAAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTT
* * *
24685794 CCAAACTTTTCAAACATTTAAGAG
192 CCGAACTTGTCAAACATTTACGAG
** * * * * * *
24685818 TTCTTTTATAAAATAGGTTCCTTAAAGAATTCAAGA-TGATCCATTCCTTTGACCAATTTTCCAA
1 TTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACT-ATCCATTCCTTCGAGCAATTTTCTAA
* * * * *
24685882 ATATTCCATGCTCGGGAAATCACATCATTTGGTTTAAATAGTTTGTCATTTTGTAGTA-AATTTT
65 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTA-AACAACTTT
** * * *** * * * *
24685946 TTATCTTTGAATTAAAAA--CATTTTCGTGACAATTGTTTCTCTCTTGGTACGTGGACGAACTTC
128 TGGTCTTTAAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTC
* * * * * *
24686009 CGAAATTTTTAGAC-TTTCATGAC
193 CGAACTTGTCAAACATTT-ACGAG
* ** *
24686032 TTCTTTTGTAACTTCGGTTCCTTAAAGTA-TCCAAGACGGTCCATTCCTTCAAGCAATTTTCTAA
1 TTCTTTTATAACTTCGGTTCCTTAAAGTACT-CAAGACTATCCATTCCTTCGAGCAATTTTCTAA
*
24686096 ACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
65 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTT
* * ** * ** * * * *
24686161 -TTCTTTAAAGTAAAATCTTCTTTACGTGAGAATTCTATTCACTCTGGGTTCTTGGACGAACGTT
129 GGTCTTTAAATTAAAAAGTTATTTAAATGAGAATTGT-TTCTCTCTTGCTTCTTGGACGAAC-TT
*
24686225 -CGAACTTCTCAAA
192 CCGAACTTGTCAAA
24686238 TAGTTTGTCA
Statistics
Matches: 722, Mismatches: 111, Indels: 37
0.83 0.13 0.04
Matches are distributed among these distances:
213 18 0.02
214 290 0.40
215 83 0.11
216 197 0.27
217 4 0.01
218 129 0.18
219 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (215 bp):
TTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACTATCCATTCCTTCGAGCAATTTTCTAAA
CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGG
TCTTTAAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
ACTTGTCAAACATTTACGAG
Found at i:24686315 original size:105 final size:104
Alignment explanation
Indices: 24686131--24686322 Score: 278
Period size: 105 Copynumber: 1.8 Consensus size: 104
24686121 CATTTGGTCT
** * *
24686131 AAATAGTTTGTCATTTTGTAAACAACTTTTTTCTTTAAAGTAAAATCTTCTTTACGTGAGAATTC
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGCCTTTAAAGTAAAAACTTATTTACGTGAGAATTC
*
24686196 TATTCACTCTGGGTTCTTGGACGAACGTTCGAACTTCTC
66 TATTCACTCAGGGTTCTTGGACGAACGTTCGAACTTCTC
* *
24686235 AAATAGTTTGTCATCTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAAT
1 AAATAGTTTGTCAT-TTTGTAAACAACTTTT-GCCTTTAAAGTAAAAACTTATTTACGTGAGAAT
* *
24686300 TGT-TTCTCTCAGGGTTCTTGGAC
64 TCTATTCACTCAGGGTTCTTGGAC
24686323 TAACTTCCAA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
104 14 0.18
105 34 0.44
106 29 0.38
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (104 bp):
AAATAGTTTGTCATTTTGTAAACAACTTTTGCCTTTAAAGTAAAAACTTATTTACGTGAGAATTC
TATTCACTCAGGGTTCTTGGACGAACGTTCGAACTTCTC
Found at i:24686746 original size:531 final size:533
Alignment explanation
Indices: 24685700--24686768 Score: 1533
Period size: 531 Copynumber: 2.0 Consensus size: 533
24685690 CTATTTGGTC
* * *
24685700 CAAATAGTTTGTTATTTTGCAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAAT
1 CAAATAGTTTGTCATTTTGCAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTAAATGAGAAT
** * * *
24685765 TGTTTCTCCCTTGCTTCTTGGTCGAATTTCCAAACTTTTCAAACATTTAAGAGTTCTTTTATAAA
66 TGTTTCTCCCAGGCTTCTTGGACGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAA
* *
24685830 ATAGGTTCCTTAAAGAATTCAAGATGATCCATTCCTTTGACCAATTTTCCAAATATTCCATGCTC
131 ATAGGTTCCTTAAAGAATTCAAGATGATCCATTCCTTCGACCAATTTTCCAAAAATTCCATGCTC
* * *
24685895 GGGAAATCACATCATTTGGTTTAAATAGTTTGTCATTTTGTAGTAAATTTTTTATCTTTGAATTA
196 GGGAAAT-ACATCATTTGGTTTAAATAGTTTGTCATTTTCTAATAAAGTTTTTATCTTTGAATTA
* * *
24685960 AAAACATTTTCGTGACAATTGTTTCTCTCTTGGTACGTGGACGAACTTCCGAAATTTTTAGACTT
260 AAAACATTTTCGTGACAATTGTTTCTCTCTTGGTACGTGGACGAACTCCCAAAATTGTTAGACTT
* * **
24686025 TCATGACTTCTTTTGTAACTTCGGTTCCTTAAAGTATCCAAGACGGTCCATTCCTTCAAGCAATT
325 TCATGACTTCTTTTATAACTTCGCTTCCTTAAAGTATCCAAGACGAACCATTCCTTCAAGCAATT
* * *
24686090 TTCTAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
390 TTCTAAACATTCCAAGCTCGAGAAATCGCACCATTTGATCTAAATAGTTTGTCATTTTGTAAACA
* ** * *
24686155 ACTTTTTTCTTTAAAGTAAAATCTTCTTTACGTGAGAATTCTATTCACTCTGGGTTCTTGGACGA
455 ACTTTTTTCTTTAAAGTAAAAACTAATTTACATGAGAATTCTATTCACTCTGGGTTCTTGGAAGA
*
24686220 ACGTTCGAACTTCT
520 ACGTTCCAACTTCT
* **
24686234 CAAATAGTTTGTCATCTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAA
1 CAAATAGTTTGTCAT-TTTGCAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTAAATGAGAA
* * *
24686299 TTGTTTCTCTCAGGGTTCTTGGACTAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAA
65 TTGTTTCTCCCAGGCTTCTTGGACGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAA
** * * * *
24686364 CTTCGGTTCGTTAAAGTATTTAAGATGATCCATTCCTTCGACCAATTTTCCAAAAATTCCATGCT
130 AATAGGTTCCTTAAAGAATTCAAGATGATCCATTCCTTCGACCAATTTTCCAAAAATTCCATGCT
*
24686429 CGGGAAAT-CA-C-TTTGGTTTAAATAGTTTGTCATTTTCTAATAAAGTTTTTATCTTTTAATTA
195 CGGGAAATACATCATTTGGTTTAAATAGTTTGTCATTTTCTAATAAAGTTTTTATCTTTGAATTA
* * *
24686491 AAAACATTTTCGTGACAATTGTTTCTCTCTTGGTTCTTGGTA-GAACTCCCAAAATTGTTATACT
260 AAAACATTTTCGTGACAATTGTTTCTCTCTTGGTACGTGG-ACGAACTCCCAAAATTGTTAGACT
* *
24686555 TTCATGAGTTCTTTTATGACTTCGCTTCCTTAAAGTA-CTCAAGACGAACCATTCCTTCAAGCAA
324 TTCATGACTTCTTTTATAACTTCGCTTCCTTAAAGTATC-CAAGACGAACCATTCCTTCAAGCAA
24686619 TTTT-TCAAACATTCCAAGCTCGAGAAATCGCACCATTTGATCTAAATAGTTTGTCATTTTGTAA
388 TTTTCT-AAACATTCCAAGCTCGAGAAATCGCACCATTTGATCTAAATAGTTTGTCATTTTGTAA
* * ** *
24686683 ACAACTTTTTGTCTTTAAATTAAAAACTAATTTACATGAGAATT-TTTTGTCTCCT-GTTTCTTG
452 ACAACTTTTT-TCTTTAAAGTAAAAACTAATTTACATGAGAATTCTATTCACT-CTGGGTTCTTG
* *
24686746 GAAGAACTTTCCAACTTGT
515 GAAGAACGTTCCAACTTCT
24686765 CAAA
1 CAAA
24686769 CATTTAAGAG
Statistics
Matches: 475, Mismatches: 54, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
530 2 0.00
531 259 0.55
532 32 0.07
533 2 0.00
534 14 0.03
535 166 0.35
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (533 bp):
CAAATAGTTTGTCATTTTGCAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTAAATGAGAAT
TGTTTCTCCCAGGCTTCTTGGACGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAA
ATAGGTTCCTTAAAGAATTCAAGATGATCCATTCCTTCGACCAATTTTCCAAAAATTCCATGCTC
GGGAAATACATCATTTGGTTTAAATAGTTTGTCATTTTCTAATAAAGTTTTTATCTTTGAATTAA
AAACATTTTCGTGACAATTGTTTCTCTCTTGGTACGTGGACGAACTCCCAAAATTGTTAGACTTT
CATGACTTCTTTTATAACTTCGCTTCCTTAAAGTATCCAAGACGAACCATTCCTTCAAGCAATTT
TCTAAACATTCCAAGCTCGAGAAATCGCACCATTTGATCTAAATAGTTTGTCATTTTGTAAACAA
CTTTTTTCTTTAAAGTAAAAACTAATTTACATGAGAATTCTATTCACTCTGGGTTCTTGGAAGAA
CGTTCCAACTTCT
Found at i:24686815 original size:216 final size:216
Alignment explanation
Indices: 24686235--24688708 Score: 2431
Period size: 216 Copynumber: 11.5 Consensus size: 216
24686225 CGAACTTCTC
* *
24686235 AAATAGTTTGTCATCTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAAT
1 AAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
** **
24686300 TGTTTCTCTCAGGGTTCTTGGACTAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
65 TGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
* * * * * * *
24686365 TTCGGTTCGTTAAAGTATTTAAGATGATCCATTCCTTCGACCAATTTTCCAAAAATTCCATGCTC
130 TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTC
*
24686430 GGGAAAT--CA-C-TTTGGTTT
195 GGGAAATCGCATCATTTGGTCT
* * ** * * * *
24686448 AAATAGTTTGTCATTTTCTAATA-AAGTTTTTATCTTTTAATTAAAAAC--ATTTTCGTGACAAT
1 AAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
* * * * * * *
24686510 TGTTTCTCTCTTGGTTCTTGGTAGAACTCCCAAAATTGTTATAC-TTTCATGAGTTCTTTTATGA
65 TGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTT-AAGAGTTCTTTTATAA
* * * * *
24686574 CTTCGCTTCCTTAAAGTACTCAAGACGAACCATTCCTTCAAGCAATTTTTCAAACATTCCAAGCT
129 CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCT
* * *
24686639 CGAGAAATCGCACCATTTGATCT
194 CGGGAAATCGCATCATTTGGTCT
* * *
24686662 AAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACTAATTTACATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATT
* * * * *
24686727 TTTTGTCTCCTGTTTCTTGGAAGAACTTTCC-AACTTGTCAAACATTTAAGAGTTCTTTTATGAC
66 GTTTCTCTCTTGGTTCTTGGAAGAAC-TTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
** * * * * * * *
24686791 TTCGATTCCAGAAGGTATTCAAGACGATCCATTCCTTCAACCAATTTTACGATCATTCCATGCCC
130 TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTC
* * *
24686856 GGGAAATCGCATCACTCGATCT
195 GGGAAATCGCATCATTTGGTCT
* * * * *
24686878 AAATAGTTTGTCATTTTGTAATA-AACTTTTTTGTCTATGAATT-AAAAC--ATTTTCGTTAGAA
1 AAATAGTTTGTCATTTTGTAA-ACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAA
* * * * *
24686939 TTGTTTCTCTCTTGGTTCTTGGCAA-AACTTCCAAACTTGTTATACTTTTATGAGTTCTTTTAGA
64 TTGTTTCTCTCTTGGTTCTTGG-AAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATA
* * * * *
24687003 AATTCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTC
128 ACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGC
*
24687068 TCGGGAAATTGCATCATTTGGTCT
193 TCGGGAAATCGCATCATTTGGTCT
* *
24687092 AAATAGTTTGTCATTTTGTAACCAACTTTTGGCCTTTGAATTAAAAACTTATTTACATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATT
* ** * * *
24687157 GATTCTCTCAAGGTTCTTGGACA-AACTTCCAAACTTGTGAAACAATTGAGAGTTCTTTTATAAC
66 GTTTCTCTCTTGGTTCTTGGA-AGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
* * * *
24687221 TTCGATTCCTTAAAGCATTCAAGATGATCCATTCCTTCGACCAATTTTCCAAACATTCCATGCTC
130 TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTC
* * *
24687286 TGGAAATCACATCATTTGGTTT
195 GGGAAATCGCATCATTTGGTCT
* * ** * * *
24687308 AAATAGTTCT-TCATTTTCTAGTA-AACTTTTTATCTTTGAATTAAAAAC--ATTTTCGTGACAA
1 AAATAGTT-TGTCATTTTGTA-AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAA
* * * * * *
24687369 TTGTTTCTCTCTTGGTTCCTGGCAGAACTCCCGAAA-TTGTTATAC-TTTCATGAGTTCTTTTAT
64 TTGTTTCTCTCTTGGTTCTTGGAAGAACTTCC-AAACTTGTCAAACATTT-AAGAGTTCTTTTAT
* * * * * ** *
24687432 AACTTTGGTTCCTTAAAGTATTCAATACAATTCATTCCTTCGAGCAATTTCCCGAACATTCCATG
127 AACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATG
*
24687497 CTCGGGAAATCGCATCGTTTGGTCT
192 CTCGGGAAATCGCATCATTTGGTCT
* * * * * *
24687522 AAATAGTTTTTCATTTTGTAAACAAATTTTGGTCTTTAAATTAAAAAGTTATTTAAATTAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATT
* * * ** * * * *
24687587 TTTTCTCTCGTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCT
66 GTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
* * *
24687652 TCGATTCCTTAAAGTACTCAAGACTATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG
131 TCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCG
* **
24687717 AGAAGCCGCA-CTATTTGGTCT
196 GGAAATCGCATC-ATTTGGTCT
* * * *
24687738 AAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTAAATTAAAAAGTTATTTAAATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATT
* * ** * * * * * *
24687803 GATTCTCCCTTTCTTCTTGGCATAACTTTCGAATTTGTCAAACATTTACGAGTTCTTTTATAACT
66 GTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
* * * * *
24687868 TCGATTCCTTAAAGTACTCAAGATGAACCATTCATTCGAGCAATTTTTCCAACATTCCATGCGT-
131 TCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGC-TC
* * *
24687932 GAGAAATAGCACCATTTGGTCT
195 GGGAAATCGCATCATTTGGTCT
* * * * * *
24687954 AAATTGTTTGTCATTTTTTAAACAACTTTTGGTCTTTAAATTAAAAAGTTTTTTAAATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATT
* ** * * *
24688019 GTTTCTCTCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
66 GTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
* * * ** * **
24688084 TTGGTTCCTTAAAGTACTCAAGAATATATCCATTCCTTCAAGCAATTTTTTGAACATTCCATGCT
131 TCGATTCCTTAAAGTATTCAAG-A-CGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCT
* *
24688149 CGGGAAACCGCA-CTATTTGGTCC
194 CGGGAAATCGCATC-ATTTGGTCT
* * * * * *
24688172 AAATAGTTTTTCATTTTGTGAACGACTTTTGGTCTTTGAATTAAAAAGTTACTTAAATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATT
* * ** * * * * * *
24688237 TTTTCTCCCTTTCTTCTT-GACCGAATTTTCGAACTTGTTAAACATTTAAGAGTTCTTTGATAAC
66 GTTTCTCTCTTGGTTCTTGGA-AGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
* ** *
24688301 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTTATTCGACCAATTTTTCAAACATTCCATGCTC
130 TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTC
* * *
24688366 AGGAAACCGCATCATTTGGTTT
195 GGGAAATCGCATCATTTGGTCT
* * * * * ** * * *
24688388 CAATAGTTCGTCAGTTTCT-AATAACTTTTTATCTTTGAATTAAAAAC--ATTTTCGTGACAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATT
* * * * * * * *
24688450 GTTTTTCTCTTGGTTCTTGGCAGAACTTTCAAAATTTTTATAC-TTTCATGAGTTCTTTTATATA
66 GTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTT-AAGAGTTCTTTTATA-A
* *
24688514 CTTC-AGTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAATA-A-TCCAT
129 CTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TCAA-ACATTCCAT
* *
24688576 GTTCGGGAAATCGCAACATTTGGTCT
191 GCTCGGGAAATCGCATCATTTGGTCT
* * * * *
24688602 AAATAGTTTGTTATTTTGTAAACAACTTTT-TTCTTTAAAGTAAAAACTTATTTACGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATT
* * * * *
24688666 GTTTTCACCCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
66 G-TTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCAAA
24688709 TAGTTTTTCA
Statistics
Matches: 1874, Mismatches: 337, Indels: 96
0.81 0.15 0.04
Matches are distributed among these distances:
209 3 0.00
210 122 0.07
212 31 0.02
213 91 0.05
214 472 0.25
215 45 0.02
216 870 0.46
217 62 0.03
218 178 0.09
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (216 bp):
AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATT
GTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
TCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCG
GGAAATCGCATCATTTGGTCT
Found at i:24686861 original size:961 final size:963
Alignment explanation
Indices: 24685269--24687121 Score: 2392
Period size: 961 Copynumber: 1.9 Consensus size: 963
24685259 CATTTGGTCT
* * *
24685269 AAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAATTTATTTAAATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTTAAATTAAAAACTTATTTAAATGAGAATT
** * * * *
24685334 GTTTCTCTCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
66 GTTTCTCTCAGGCTTCTTGGACGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
* * * ** * *
24685399 TCGGTTCCTTAAAGTACTCAATACTATCCATTTCTTCGAGCAATTTTCTGAACATTCTACGCTCG
131 TCGGTTCCTTAAAGTACTCAAGACTATCCATTCCTTCGACCAATTTTCCAAAAATTCCACGCTCG
* *
24685464 GGAAACCGCACTATTTGGTCTAAATAGTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAA
196 GGAAA-CGCAC-ATTTGGTCTAAATAGTGTCATTTTCTAAACAACTTTTGATCTTTAAATTAAAA
* * ** * *
24685529 AGTTATTTAAATGAGAATTGTTTCTCCCTTCCTTCTTGGCTGAACTTTCGAACTTGTCAAACATT
259 AG-CATTTAAATGACAATTGTTTCTCCCTTCCTTCTTGGCTGAACTCCCAAAATTGTCAAACATT
* *
24685594 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACCATATCCATTCCTTCGAGCAAT
323 TACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTACTCAAGACCATATCCATTCCTTCAAGCAAT
* * * * *
24685659 TTTCTAAACATTCCATGCTCAAGAAACCGTACTATTTGGTCCAAATAGTTTGTTATTTTGCAAAC
388 TTTCTAAACATTCCAAGCTCAAGAAACCGCACCATTTGATCCAAATAGTTTGTCATTTTGCAAAC
* * * **
24685724 AACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGTCG
453 AACTTTTGGTCTTTAAATTAAAAACTAATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGAAG
* * **
24685789 AATTTCCAAACTTTTCAAACATTTAAGAGTTCTTTTATAAAATAGGTTCCTTAAAGAATTCAAGA
518 AATTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAAATAGATTCCAGAAAGAATTCAAGA
* ** * * * * * *
24685854 TGATCCATTCCTTTGACCAATTTTCCAAATATTCCATGCTCGGGAAATCACATCATTTGGTTTAA
583 CGATCCATTCCTTCAACCAATTTTACAAATATTCCATGCCCGGGAAATCACATCACTCGATCTAA
* *
24685919 ATAGTTTGTCATTTTGTAGTAAA-TTTTTTATCTTTGAATTAAAAACATTTTCGTGACAATTGTT
648 ATAGTTTGTCATTTTGTAATAAACTTTTTTATCTATGAATT-AAAACATTTTCGTGACAATTGTT
* * *
24685983 TCTCTCTTGGTACGTGG-ACGAACTTCCGAAA-TTTTTAGACTTTCATGACTTCTTTT-GTAACT
712 TCTCTCTTGGTACGTGGCA-AAACTTCC-AAACTTGTTAGACTTTCATGACTTCTTTTAG-AAAT
* *
24686045 TCGGTTCCTTAAAGTATCCAAGACGGTCCATTCCTTCAAGCAA-TTTTCTAAACATTCCATGCTC
774 TCGGTTCCGTAAAGTATCCAAGACGATCCATTCCTTCAAGCAATTTTTC-AAACATTCCATGCTC
24686109 GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTTCTTTAAAGTAA
838 GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTTCTTTAAAGTAA
24686174 AATCTTCTTTACGTGAGAATTCTATTCACTCTGGGTTCTTGGACGAACGTTCGAACTTCTC
903 AATCTTCTTTACGTGAGAATTCTATTCACTCTGGGTTCTTGGACGAACGTTCGAACTTCTC
* **
24686235 AAATAGTTTGTCATCTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAAT
1 AAATAGTTTGTCAT-TTTGTAAACAACTTTTGGCCTTTAAATTAAAAACTTATTTAAATGAGAAT
* *
24686300 TGTTTCTCTCAGGGTTCTTGGACTAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
65 TGTTTCTCTCAGGCTTCTTGGACGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
* * * *
24686365 TTCGGTTCGTTAAAGTATTTAAGA-TGATCCATTCCTTCGACCAATTTTCCAAAAATTCCATGCT
130 TTCGGTTCCTTAAAGTACTCAAGACT-ATCCATTCCTTCGACCAATTTTCCAAAAATTCCACGCT
* * * * *
24686429 CGGGAAA-TCAC-TTTGGTTTAAATAGTTTGTCATTTTCTAATA-AAGTTTTTATCTTTTAATTA
194 CGGGAAACGCACATTTGGTCTAAATAG--TGTCATTTTCTAA-ACAACTTTTGATCTTTAAATTA
*** * ** * *
24686491 AAAA-CATTTTCGTGACAATTGTTTCTCTCTTGGTTCTTGG-TAGAACTCCCAAAATTGTTATAC
256 AAAAGCATTTAAATGACAATTGTTTCTCCCTTCCTTCTTGGCT-GAACTCCCAAAATTGTCAAAC
* * *
24686554 -TTTCATGAGTTCTTTTATGACTTCGCTTCCTTAAAGTACTCAAGACGA-A-CCATTCCTTCAAG
320 ATTT-ACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTACTCAAGACCATATCCATTCCTTCAAG
* * *
24686616 CAATTTT-TCAAACATTCCAAGCTCGAGAAATCGCACCATTTGATCTAAATAGTTTGTCATTTTG
384 CAATTTTCT-AAACATTCCAAGCTCAAGAAACCGCACCATTTGATCCAAATAGTTTGTCATTTTG
* * * * * *
24686680 TAAACAACTTTTTGTCTTTAAATTAAAAACTAATTTACATGAGAATTTTTTGTCTCC-TGTTTCT
448 CAAACAACTTTTGGTCTTTAAATTAAAAACTAATTTAAATGAGAATTGTTTCTC-CCTTGCTTCT
* ** * * *
24686744 TGGAAGAACTTTCC-AACTTGTCAAACATTTAAGAGTTCTTTTATGACTTCGATTCCAGAAGGTA
512 TGGAAGAA-TTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAAATAGATTCCAGAAAGAA
* *
24686808 TTCAAGACGATCCATTCCTTCAACCAATTTTAC-GATCATTCCATGCCCGGGAAATCGCATCACT
576 TTCAAGACGATCCATTCCTTCAACCAATTTTACAAAT-ATTCCATGCCCGGGAAATCACATCACT
* * *
24686872 CGATCTAAATAGTTTGTCATTTTGTAATAAACTTTTTTGTCTATGAATTAAAACATTTTCGTTAG
640 CGATCTAAATAGTTTGTCATTTTGTAATAAACTTTTTTATCTATGAATTAAAACATTTTCGTGAC
* * * * *
24686937 AATTGTTTCTCTCTTGGTTCTTGGCAAAACTTCCAAACTTGTTATACTTTTATGAGTTCTTTTAG
705 AATTGTTTCTCTCTTGGTACGTGGCAAAACTTCCAAACTTGTTAGACTTTCATGACTTCTTTTAG
* * * *
24687002 AAATTCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATT
770 AAATTCGGTTCCGTAAAGTATCCAAGACGATCCATTCCTTCAAGCAATTTTTCAAACATTCCATG
* * *
24687067 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAACCAACTTTT
835 CTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
24687122 GGCCTTTGAA
Statistics
Matches: 758, Mismatches: 113, Indels: 37
0.83 0.12 0.04
Matches are distributed among these distances:
960 6 0.01
961 412 0.54
962 34 0.04
963 96 0.13
965 35 0.05
966 15 0.02
967 160 0.21
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (963 bp):
AAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTTAAATTAAAAACTTATTTAAATGAGAATT
GTTTCTCTCAGGCTTCTTGGACGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
TCGGTTCCTTAAAGTACTCAAGACTATCCATTCCTTCGACCAATTTTCCAAAAATTCCACGCTCG
GGAAACGCACATTTGGTCTAAATAGTGTCATTTTCTAAACAACTTTTGATCTTTAAATTAAAAAG
CATTTAAATGACAATTGTTTCTCCCTTCCTTCTTGGCTGAACTCCCAAAATTGTCAAACATTTAC
GAGTTCTTTTATAACTTCGCTTCCTTAAAGTACTCAAGACCATATCCATTCCTTCAAGCAATTTT
CTAAACATTCCAAGCTCAAGAAACCGCACCATTTGATCCAAATAGTTTGTCATTTTGCAAACAAC
TTTTGGTCTTTAAATTAAAAACTAATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGAAGAAT
TTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAAATAGATTCCAGAAAGAATTCAAGACGA
TCCATTCCTTCAACCAATTTTACAAATATTCCATGCCCGGGAAATCACATCACTCGATCTAAATA
GTTTGTCATTTTGTAATAAACTTTTTTATCTATGAATTAAAACATTTTCGTGACAATTGTTTCTC
TCTTGGTACGTGGCAAAACTTCCAAACTTGTTAGACTTTCATGACTTCTTTTAGAAATTCGGTTC
CGTAAAGTATCCAAGACGATCCATTCCTTCAAGCAATTTTTCAAACATTCCATGCTCGAGAAATC
GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTTCTTTAAAGTAAAATCTTCT
TTACGTGAGAATTCTATTCACTCTGGGTTCTTGGACGAACGTTCGAACTTCTC
Found at i:24687050 original size:430 final size:427
Alignment explanation
Indices: 24686235--24688704 Score: 2537
Period size: 430 Copynumber: 5.7 Consensus size: 427
24686225 CGAACTTCTC
* * *
24686235 AAATAGTTTGTCATCTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAAT
1 AAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT
* **
24686300 TGTTTCTCTCAGGGTTCTTGGACTAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
65 TGTTTCTCTCATGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
* * * * * *
24686365 TTCGGTTCGTTAAAGTATTTAAGATGATCCATTCCTTCGACCAATTTTCCAAAAATTCCATGCTC
130 TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTC
* * * * *
24686430 GGGAAAT--CAC-TTTGGTTTAAATAGTTTGTCATTTTCTAATAAAGTTTTTATCTTTTAATTAA
195 GGGAAATCGCACATTTGGTCTAAATAGTTTGTCATTTTGTAA-AAACTTTTTGTCTTTGAATT-A
* * * *
24686492 AAACATTTTCGTGACAATTGTTTCTCTCTTGGTTCTTGGTAGAACTCCCAAAATTGTTATACTTT
258 AAACATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGCAGAACTTCCAAACTTGTTATACTTT
* * * * * *
24686557 CATGAGTTCTTTTATGACTTCGCTTCCTTAAAGTACTCAAGACGAACCATTCCTTCAAGCAATTT
323 TATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * *
24686622 TTCAAACATTCCAAGCTCGAGAAATCGCACCATTTGATCT
388 TTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCT
* *
24686662 AAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACTAATTTACATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATT
* * * * *
24686727 TTTTGTCTCCTGTTTCTTGGAAGAACTTTCC-AACTTGTCAAACATTTAAGAGTTCTTTTATGAC
66 GTTTCTCTCATGGTTCTTGGAAGAAC-TTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
** * * * * *
24686791 TTCGATTCCAGAAGGTATTCAAGACGATCCATTCCTTCAACCAATTTTACGATCATTCCATGCCC
130 TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTC
* * * *
24686856 GGGAAATCGCATCACTCGATCTAAATAGTTTGTCATTTTGTAATAAACTTTTTTGTCTATGAATT
195 GGGAAATCGCA-CATTTGGTCTAAATAGTTTGTCATTTTGTAA-AAAC-TTTTTGTCTTTGAATT
* *
24686921 AAAACATTTTCGTTAGAATTGTTTCTCTCTTGGTTCTTGGCAAAACTTCCAAACTTGTTATACTT
257 AAAACATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGCAGAACTTCCAAACTTGTTATACTT
* * *
24686986 TTATGAGTTCTTTTAGAAATTCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
322 TTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * *
24687051 TTTCGAACATTCCATTCTCGGGAAATTGCATCATTTGGTCT
387 TTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCT
* * *
24687092 AAATAGTTTGTCATTTTGTAACCAACTTTTGGCCTTTGAATTAAAAACTTATTTACATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATT
* * * * *
24687157 GATTCTCTCAAGGTTCTTGGACA-AACTTCCAAACTTGTGAAACAATTGAGAGTTCTTTTATAAC
66 GTTTCTCTCATGGTTCTTGGA-AGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
* * *
24687221 TTCGATTCCTTAAAGCATTCAAGATGATCCATTCCTTCGACCAATTTTCCAAACATTCCATGCTC
130 TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTC
* * * * * *
24687286 TGGAAATCACATCATTTGGTTTAAATAGTTCT-TCATTTTCTAGTAAACTTTTTATCTTTGAATT
195 GGGAAATCGCA-CATTTGGTCTAAATAGTT-TGTCATTTTGTA-AAAACTTTTTGTCTTTGAATT
* * *
24687350 AAAAACATTTTCGTGACAATTGTTTCTCTCTTGGTTCCTGGCAGAACTCCCGAAA-TTGTTATAC
257 -AAAACATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGCAGAACTTCC-AAACTTGTTATAC
* * * * *
24687414 TTTCATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAATACAATTCATTCCTTCGAGCAA
320 TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
** * * *
24687479 TTTCCCGAACATTCCATGCTCGGGAAATCGCATCGTTTGGTCT
385 TTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCT
* * * * *
24687522 AAATAGTTTTTCATTTTGTAAACAAATTTTGGTCTTTAAATTAAAAAGTTATTTAAATTAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATT
* * * ** * * * *
24687587 TTTTCTCTCGTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCT
66 GTTTCTCTCATGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
* * * *
24687652 TCGATTCCTTAAAGTACTCAAGACTATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG
131 TCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCG
* ** * * *
24687717 AGAAGCCGCACTATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTAAATTAA
196 GGAAATCGCAC-ATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AACTTTTTGTCTTTGAATTAA
** * * ** * * * * * *
24687782 AA-AGTTATTTAAATGAGAATTGATTCTCCCTTTCTTCTTGGCATAACTTTCGAATTTGTCAAAC
259 AACA--T-TTT-CGTGAGAATTGTTTCTCTCTTGGTTCTTGGCAGAACTTCCAAACTTGTTATAC
* * * * * * *
24687846 ATTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGATGAACCATTCATTCGAGCAA
320 TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * *
24687911 TTTTTCCAACATTCCATGCGT-GAGAAATAGCACCATTTGGTCT
385 TTTTTCAAACATTCCATGC-TCGAGAAATCGCATCATTTGGTCT
* * * * *
24687954 AAATTGTTTGTCATTTTTTAAACAACTTTTGGTCTTTAAATTAAAAAGTTTTTTAAATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATT
* * ** * * *
24688019 GTTTCTCTCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
66 GTTTCTCTCATGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
* * * ** * * **
24688084 TTGGTTCCTTAAAGTACTCAAGAATATATCCATTCCTTCAAGCAATTTTTTGAACATTCCATGCT
131 TCGATTCCTTAAAGTATTCAAG-A-CGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCT
* * * ** *
24688149 CGGGAAACCGCACTATTTGGTCCAAATAGTTTTTCATTTTGTGAACGACTTTTGGTCTTTGAATT
194 CGGGAAATCGCAC-ATTTGGTCTAAATAGTTTGTCATTTTGT-AAAAACTTTTTGTCTTTGAATT
** * * ** * * * * * *
24688214 AAAA-AGTTACTTAAATGAGAATTTTTTCTCCCTTTCTTCTTGACCGAATTTTCGAACTTGTTAA
257 AAAACA-TT--TT-CGTGAGAATTGTTTCTCTCTTGGTTCTTGGCAGAACTTCCAAACTTGTTAT
* * * ** *
24688278 ACATTTAAGAGTTCTTTGATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTATTCGACC
318 ACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* *
24688343 AATTTTTCAAACATTCCATGCTC-AGGAAACCGCATCATTTGGTTT
383 AATTTTTCAAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCT
* * * * * ** * * * *
24688388 CAATAGTTCGTCAGTTTCT-AATAACTTTTTATCTTTGAATTAAAAAC--ATTTTCGTGACAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATT
* * * * * * * * *
24688450 GTTTTTCTCTTGGTTCTTGGCAGAACTTTCAAAATTTTTATAC-TTTCATGAGTTCTTTTATATA
66 GTTTCTCTCATGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTT-AAGAGTTCTTTTATA-A
* * * * * *
24688514 CTTC-AGTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAATAATCCATGT
129 CTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGC
* *
24688578 TCGGGAAATCGCAACATTTGGTCTAAATAGTTTGTTATTTTGTAAACAACTTTTT-TCTTTAAAG
193 TCGGGAAATCGC-ACATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AACTTTTTGTCTTTGAA-
* * * * * *
24688642 TAAAAACTTATTTACGTGAGAATTGTTTTCACCCTTGGTTCTTGG-ACGAACATCCGAACTTGT
255 TTAAAAC--ATTTTCGTGAGAATTG-TTTCTCTCTTGGTTCTTGGCA-GAACTTCCAAACTTGT
24688705 CAAATAGTTT
Statistics
Matches: 1718, Mismatches: 285, Indels: 77
0.83 0.14 0.04
Matches are distributed among these distances:
426 156 0.09
427 18 0.01
428 3 0.00
429 43 0.03
430 847 0.49
431 84 0.05
432 287 0.17
433 29 0.02
434 249 0.14
435 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (427 bp):
AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATT
GTTTCTCTCATGGTTCTTGGAAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
TCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCG
GGAAATCGCACATTTGGTCTAAATAGTTTGTCATTTTGTAAAAACTTTTTGTCTTTGAATTAAAA
CATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGCAGAACTTCCAAACTTGTTATACTTTTAT
GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
AAACATTCCATGCTCGAGAAATCGCATCATTTGGTCT
Found at i:24687585 original size:646 final size:643
Alignment explanation
Indices: 24686235--24694323 Score: 4159
Period size: 646 Copynumber: 12.4 Consensus size: 643
24686225 CGAACTTCTC
* * **
24686235 AAATAGTTTGTCATCTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAAT
1 AAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAAT
** * *
24686300 TGTTTCTCTCAGGGTTCTTGG-ACTAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAA
65 TGTTTCTCTCTTGCTTCTTGGCA-GAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAA
* * * *
24686364 CTTCGGTT-CGTTAAAGTATTTAAGATGATCCATTCCTTCGACCAATTTTCCAAAAATTCCATGC
129 CTTCGGTTCCG-TAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGC
* * * * * *
24686428 TCGGGAAA--TCAC-TTTGGTTTAAATAGTTTGTCATTTTCTAATAAAGTTTTTATCTTTTAATT
193 TCGGGAAACCGCACATTTGGTCTAAATAGTTTGTCATTTTCTAA-CAACTTTTGATCTTTGAATT
* * * * * * *
24686490 AAAAACATTTTCGTGACAATTGTTTCTCTCTTGGTTCTTGGTAGAACTCCCAAAATTGTTATACT
257 AAAAACATTTACATGACAATTGATTCTCTCTTGGTTCTTGGCAGAACTTCCAAAATTGTTAAACA
* * *
24686555 TTCATGAGTTCTTTTATGACTTCGCTTCCTTAAAGTACTCAAGACGAACCATTCCTTCAAGCAAT
322 TTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGCAAT
* * * *
24686620 TTTTCAAACATTCCAAGCTC-GAGAAATCGCACCATTTGATCTAAATAGTTTGTCATTTTGTAAA
387 TTTCCAAACATTCCATGCTCTGAGAAATCACACCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * *
24686684 CAACTTTTTGTCTTTAAATTAAAAACTAATTTACATGAGAATTTTTTGTCTCCTGTTTCTTGGAA
452 CAACTTTTTGTCTTTAAATTAAAAACT-ATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGCA
* * * ** *
24686749 GAACTTTCC-AACTTGTCAAACATTTAAGAGTTCTTTTATGACTTCGATTCCAGAAGGTATTCAA
516 GAAC-TTCCGAACTTGTCAAAC-TTTAAGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
* * * * * * * *
24686813 GACGATCCATTCCTTCAACCAATTTTACGATCATTCCATGCCCGGGAAATCGCATCACTCGATCT
579 GACAATTCATTCCTTCAAGCAATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT
* * ** *
24686878 AAATAGTTTGTCATTTTGTAATA-AACTTTTTTGTCTATGAATTAAAACA--T-TTT-CGTTAGA
1 AAATAGTTTGTCATTTTGTAA-ACAAC-TTTTGGTCTTTGAATTAAAA-AGTTATTTAAATGAGA
* * * * * * *
24686938 ATTGTTTCTCTCTTGGTTCTTGGCAAAACTTCCAAACTTGTTATACTTTTATGAGTTCTTTTAGA
63 ATTGTTTCTCTCTTGCTTCTTGGCAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATA
* * * *
24687003 AATTCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTC
128 ACTTCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGC
** * **
24687068 TCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAACCAACTTTTGGCCTTTGAAT
193 TCGGGAAACCGCA-CATTTGGTCTAAATAGTTTGTCATTTTCTAA-CAACTTTTGATCTTTGAAT
* ** * *
24687133 TAAAAACTTATTTACATGAGAATTGATTCTCTCAAGGTTCTTGGACA-AACTTCCAAACTTGTGA
256 TAAAAAC--ATTTACATGACAATTGATTCTCTCTTGGTTCTTGG-CAGAACTTCCAAAATTGTTA
* * * * *
24687197 AACAATTGA-GAGTTCTTTTATAACTTCGATTCCTTAAAGCATTCAAGATGATCCATTCCTTCGA
318 AAC-ATTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGAACCATTCCTTCGA
* * *
24687261 CCAATTTTCCAAACATTCCATGCTCTG-GAAATCACATCATTTGGTTTAAATAGTTCT-TCATTT
382 GCAATTTTCCAAACATTCCATGCTCTGAGAAATCACACCATTTGGTCTAAATAGTT-TGTCATTT
* * * * * * * *
24687324 TCTAGTA-AACTTTTTATCTTTGAATTAAAAAC-ATTTTCGTGACAATTGTTTCTCTCTTGGTTC
446 TGTA-AACAACTTTTTGTCTTTAAATTAAAAACTATTTACATGAGAATTGTTTCTCTCTTGCTTC
* * * * * *
24687387 CTGGCAGAACTCCCGAAATTGTTATACTTTCATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTA
510 TTGGCAGAACTTCCGAACTTGTCAAACTTT-AAGAGTTCTTTTATAACTTTGGTTCCTTAAAGTA
* * ** *
24687452 TTCAATACAATTCATTCCTTCGAGCAATTTCCCGAACATTCCATGCTCGGGAAATCGCATCGTTT
574 TTCAAGACAATTCATTCCTTCAAGCAATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTT
24687517 GGTCT
639 GGTCT
* * * *
24687522 AAATAGTTTTTCATTTTGTAAACAAATTTTGGTCTTTAAATTAAAAAGTTATTTAAATTAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATT
* * * * * * *
24687587 TTTTCTCTCGTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCT
66 GTTTCTCTCTTGCTTCTTGGCAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
* * * * * *
24687652 TCGATTCCTTAAAGTACTCAAGACTATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG
131 TCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGCTCG
* * * * * *
24687717 AGAAGCCGCACTATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTAAATTAA
196 GGAAACCGCAC-ATTTGGTCTAAATAGTTTGTCATTTTCT-AACAACTTTTGATCTTTGAATTAA
* * * * ** * * * * *
24687782 AAAGTTATTTAAATGAGAATTGATTCTCCCTTTCTTCTTGGCATAACTTTCGAATTTGTCAAACA
259 AAA--CATTTACATGACAATTGATTCTCTCTTGGTTCTTGGCAGAACTTCCAAAATTGTTAAACA
* * * *
24687847 TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGATGAACCATTCATTCGAGCAAT
322 TTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGCAA-
* * *
24687912 TTTTCC-AACATTCCATGC-GTGAGAAAT-AGCACCATTTGGTCTAAATTGTTTGTCATTTTTTA
386 TTTTCCAAACATTCCATGCTCTGAGAAATCA-CACCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * *
24687974 AACAACTTTTGGTCTTTAAATTAAAAAGTTTTTTAAATGAGAATTGTTTCTCTCTTGCTTCTTGG
450 AACAACTTTTTGTCTTTAAATTAAAAA-CTATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGG
* * *
24688039 CCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTACTCA
514 CAGAACTTCCGAACTTGTCAAAC-TTTAAGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
** *
24688104 AGA-ATATATCCATTCCTTCAAGCAATTTTTTGAACATTCCATGCTCGGGAAACCGCA-CTATTT
578 AGACA-AT-T-CATTCCTTCAAGCAATTTTACGAACATTCCATGCTCGGGAAATCGCATC-ATTT
*
24688167 GGTCC
639 GGTCT
* * * *
24688172 AAATAGTTTTTCATTTTGTGAACGACTTTTGGTCTTTGAATTAAAAAGTTACTTAAATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATT
* * * * * * * * * *
24688237 TTTTCTCCCTTTCTTCTTGACCGAATTTTCGAACTTGTTAAACATTTAAGAGTTCTTTGATAACT
66 GTTTCTCTCTTGCTTCTTGGCAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
* ** *
24688302 TCGGTTCCTTAAAGTATTCAAGACGATCCATTTATTCGACCAATTTTTCAAACATTCCATGCTCA
131 TCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGCTCG
* * * * * *
24688367 GGAAACCGCATCATTTGGTTTCAATAGTTCGTCAGTTTCTAATAACTTTTTATCTTTGAATTAAA
196 GGAAACCGCA-CATTTGGTCTAAATAGTTTGTCATTTTCTAACAACTTTTGATCTTTGAATTAAA
* * * * * * * *
24688432 AACATTTTCGTGACAATTGTTTTTCTCTTGGTTCTTGGCAGAACTTTCAAAATTTTTATACTTTC
260 AACATTTACATGACAATTGATTCTCTCTTGGTTCTTGGCAGAACTTCCAAAATTGTTAAACATTC
* * *
24688497 ATGAGTTCTTTTATATACTTC-AGTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGCAATT
325 ATGAGTTCTTTTATA-ACTTCGA-TTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGCAATT
** * * * * * * *
24688561 TTCTGAATAATCCATGTTC-GGGAAATCGCAACATTTGGTCTAAATAGTTTGTTATTTTGTAAAC
388 TTCCAAACATTCCATGCTCTGAGAAATCACACCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * *
24688625 AACTTTTT-TCTTTAAAGTAAAAACTTATTTACGTGAGAATTGTTTTCACCCTTGGTTCTTGG-A
453 AACTTTTTGTCTTTAAATTAAAAAC-TATTTACATGAGAATTG-TTTCTCTCTTGCTTCTTGGCA
* * *** * **
24688688 CGAACATCCGAACTTGTCAAATAGTTTTTCA-TT-TTTGTAAACAACTTTTGGCCTTTGAATTAA
516 -GAACTTCCGAACTTGTC-AA-ACTTTAAGAGTTCTTT-T--ATAAC-TTTGG---TT-CCTT--
* * * * * * * **
24688751 AAACTTACTTACGAGAGAATT-GTTTCTCTCAAG--GTTCTTAGATGAAC-TTCCAAACTTTTCA
568 AAA-GTA-TT-CAAGACAATTCATTCCT-TCAAGCAATT-TT--ACGAACATTCC--A-TGCTC-
*** ** * *
24688812 AACATTTAAGAGTTATTTTACAACTTCGGTTCGTT
622 GGGA---AATCG-CA---T-C-A-TTTGG-TC--T
* ** *
24688847 AAAGT-GTTCAAGATGATCCATTCCTTCG-ACCAATTTTCCAAACATTTCATGCTC-GGGAAATC
1 AAA-TAGTT-----TG-T-CATT--TT-GTA--AA-----C-AAC-TTT--TGGTCTTTG-AATT
** * * * ** ** *
24688909 ACATCATTTGGTTTAAAT-AG--TTCGTCATTTTCTAATAAACTTTTTATCTTTGAATTAAAAAC
43 A-AAAAGTT-ATTTAAATGAGAATT-G----TTTCT-CT---CTTGCT-TC-TTG---GCAGAAC
*** * * * *
24688971 ATTTTCGTCACAA-TTGTTTCTCTCTTGGTTCTTGGTAGAACTCCCAAAATTGTTAT-ACTTTCA
92 ---TTC--CA-AACTTG--TCAAAC----AT-TT--AAG-AGT-TC----TT-TTATAAC-TTC-
** * * * *
24689034 TGAGTTCTTTTATAACTTCACTTCCTTAAAGTATTCAAGA-CGATCCATTCCTTCGAGCAATTTT
133 -G-GTTC-CGTA-AA-GT-A-TT-C---AAG-A--C--GATCCATTC----CTTCGACCAATTTT
* * * *
24689098 TCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTATAAATAAC
178 TCAAACATTCCATGCTCGGGAAACCGCA-CATTTGGTCTAAATAGTTTGTCATTTTCT-AACAAC
* * ** * * * * *
24689163 TTTTGGTCTTTAAATTAAATAGTTATTTAAATGAGAATTGTTTCTCTTTTGCTTCTTGGCCA-AA
241 TTTTGATCTTTGAATTAAA-A-ACATTTACATGACAATTGATTCTCTCTTGGTTCTTGG-CAGAA
* ** * * ** * * * * * *
24689227 TTTCTGAACTTGTCAAATTTTTACGAGTTCATTTATTACTTCGGTTCCTTAAAGTACTCAAGACT
303 CTTCCAAAATTGTTAAACATTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACG
* * ** * * *
24689292 ATCCCTTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-G-GACAATTACACCATTTGCTCAAA
368 AACCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCTGAGA-AATCACACCATTTGGTCTAA
* ** *
24689355 ATAGTTTGTCATTTTGTAAACAACTTTTTGTCATTAAATTAAAAACTAATTTATGTGAGAATTTT
432 ATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACT-ATTTACATGAGAATTGT
* * * *
24689420 TTGTCTCTTGGTTCTTGG-ACGAACTTCCGAACTTGTAAAACATTTAAGAGTTCTTTTATAAATT
496 TTCTCTCTTGCTTCTTGGCA-GAACTTCCGAACTTGTCAAAC-TTTAAGAGTTCTTTTATAACTT
* * * * * * * ** *
24689484 TGATTCCTGAGAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTTTGAACATTCAATGCTCGG
559 TGGTTCCTTAAAGTATTCAAGACAATTCATTCCTTCAAGCAATTTTACGAACATTCCATGCTCGG
*
24689549 GAAATCGCATAATTTGGTCT
624 GAAATCGCATCATTTGGTCT
* * * *
24689569 AAATTGTTTGTCATTTTGTAAAGAAATTTTGGTCTTT-AATTTAAAAAGTTATTTAAATTAGAAT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAAGTTATTTAAATGAGAAT
* * * * * *
24689633 TGTTTCTCTCTTTCTTCTT-GCCGAACTTCCGAACTTATCAAACTTTTACGAGTTCTTTTATAAC
65 TGTTTCTCTCTTGCTTCTTGGCAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAAC
* * * *
24689697 TTCGGTTCCTTGAAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCCAAACATTCCATGCTC
130 TTCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGCTC
* ** * * * *
24689762 GGGAAATCATATCATTTGGTTTAAATAGTTCGTCATTTTCTAATAAACTTTTTATCTTTGAATTA
195 GGGAAACCGCA-CATTTGGTCTAAATAGTTTGTCATTTTCTAA-CAACTTTTGATCTTTGAATTA
* * ** * * *** * *
24689827 AAAACATTTTCGTGACAATTTTTTTCTCTCTTGGTTCTTGGAAAAACTTTTGAAATTGTTATACT
258 AAAACATTTACATGACAA-TTGATTCTCTCTTGGTTCTTGGCAGAACTTCCAAAATTGTTAAACA
* * *
24689892 TTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAT
322 TTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGCAAT
* * *
24689957 TTTCCGAACATTCCATGCTC-GATAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
387 TTTCCAAACATTCCATGCTCTGAGAAATCACACCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * * * * *
24690021 CAAATTTTTTTCTTTGAAGTAAAAACTTATTTACGTGAGAATTGTTTTCACTCTTGGTTCCTGG-
452 CAACTTTTTGTCTTTAAATTAAAAAC-TATTTACATGAGAATTG-TTTCTCTCTTGCTTCTTGGC
* * * * *
24690085 ACGAACATCCGAACTTGTCAAACATTAACGAGTTCTTTTATAACTTTGATT-CTTGAGAGTGTTC
515 A-GAACTTCCGAACTTGTCAAACTTTAA-GAGTTCTTTTATAACTTTGGTTCCTT-AAAGTATTC
** * * * * * * * *
24690149 AAGATGA-TCCTTACCTACGACCAATTTTCCGAATATTCCATGCTCGAGAAATCACATCATTTGG
577 AAGACAATTCATT-CCTTCAAGCAATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGG
24690213 TCT
641 TCT
* * * * * * * *** *
24690216 AAATAGTTTGTAACTTTGTGAACAGCTTTTTGTCTTTAAATTAAAAATTTATTTCCGTGAGAATA
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATT
* * * * * *
24690281 GTTTCTCCCTTGGTTGTTGG-ACGAACTTTCGAACTTG-CTAAAC--TTATGAGTTCTTTTATAA
66 GTTTCTCTCTTGCTTCTTGGCA-GAACTTCCAAACTTGTC-AAACATTTAAGAGTTCTTTTATAA
* * * * * * * *
24690342 CTTCGGATAC-TGAGAGTATTCAAGACAATCCATTCCTTCGATCAA-TTGTCTGAACATTCCATC
129 CTTCGGTTCCGT-AAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTC-AAACATTCCATG
* ** * * * * * * *
24690405 CTCGGGAAATCGCATCATTAAGTCTAAATAGTTTTTAATTTT-GAAAAAC-TTTGGTCATTAAAT
192 CTCGGGAAACCGCA-CATTTGGTCTAAATAGTTTGTCATTTTCTAACAACTTTTGATCTTTGAAT
** * * * * * * * * *
24690468 T-AAAGTA-TTAAAGGCGATCAAATTTTCCGA-GCAATTTTTTGAACATTCCATGCTCGAGAAAT
256 TAAAAACATTTACA--TGA-C-AA--TT--GATTC--TCTCTTG---GTT-CTTG-GC-AGAACT
* * * * * ** * * * * * *
24690530 TGCATCATTTGGTTTTAATAGTTTGTCA-TT-TTGTAAAAAAACTTTTGA-T-CTT--TGTA-TT
305 TCCA-AAATT-G-TTAAACA-TTCATGAGTTCTT-T--TATAAC-TTCGATTCCTTAAAGTACTC
* ** * ** ** * * * *
24690588 AA-A--AACTTATTTATGT-GAG-AATCGTTCCTGAC-TT-GGT-TTTTGAACGAACTTC-CA-A
362 AAGACGAAC-CATTCCT-TCGAGCAAT-TTTCCAAACATTCCATGCTCTG-A-GAA-ATCACACC
* *** * * ** * * * * *
24690643 ACTT-G--TAAATTA-TTTAAGAGTTCTT-T-CATAACTTCGAT-TCCTGAGAGTATTCAAGACG
421 ATTTGGTCTAAA-TAGTTTGTCA-TT-TTGTAAACAACTT-TTTGTCTTTA-A--ATTAAAAACT
* * * ** * * * * * *
24690701 ATCCATTCCTTCGACCAATT-TTT-TGAACATTCCATTATCGG--GAAATTGC-ATCATTTCGTC
479 AT---TTACAT-GA-GAATTGTTTCT-CTC-TTGC-TTCTTGGCAGAACTTCCGA--ACTT-GTC
* *** * * * *
24690761 TAAATAGTTTGTCA-TT-TTGTAATAAACTTTTGG-T-CTT--TGAATT-AA-A-AACTT-ATTT
533 --AA-ACTTTAAGAGTTCTT-TTAT-AAC-TTTGGTTCCTTAAAGTATTCAAGACAA-TTCATTC
* * *** * * * * * * ** *
24690816 ATGTC-AG-AATTGTTTCTCTC-TT--GTTCTTGGATGAACT-TC-TAAACTAGTC-
591 CT-TCAAGCAATT-TTACGAACATTCCATGCTCGG--GAAATCGCATCATTTGGTCT
** * ** * **** **
24690865 AAA-A-TTT-T-A-CGTGT--TC--C-TTT-AACATTT--TTTCCCTA-TTATTTACGTGAGAAT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTC-TTTGAATTAAAAAGTTATTTAAATGAGAAT
* * * * *
24690916 TGTTTCTCTCTTGGTTCTTGG-ACGAACTTTCGAACTTGTCAAACATTTATGAGTTCTTTTCTAA
65 TGTTTCTCTCTTGCTTCTTGGCA-GAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAA
* * * * * * * *
24690980 CTTTGGATCCTTAAAGTATTCAAGACGATCCATT-TTGTCGA-GAAATTTGCAAGCATTCCATGC
129 CTTCGGTTCCGTAAAGTATTCAAGACGATCCATTCCT-TCGACCAATTTTTCAAACATTCCATGC
** * * * * ** *
24691043 TTAGG-AATCACATCATTTGGTCTAAATAGTTTTTTATCTTGTC-AACAACGCTTGGTCTTTGAA
193 TCGGGAAACCGCA-CATTTGGTCTAAATAGTTTGTCAT-TT-TCTAACAACTTTTGATCTTTGAA
* * * * * * *
24691106 TTAAAAACTTATTTACATG---A-T--TTCTCTCTTGCTTCCTGGCCGAACTTTCGAAGTTGTCA
255 TTAAAAAC--ATTTACATGACAATTGATTCTCTCTTGGTTCTTGGCAGAACTTCCAAAATTGTTA
** * * * * * *
24691165 AAGTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACTATATACTTTCCTTCA
318 AACATTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGA-A-CCATTCCTTCG
* *** * *
24691230 AG-GATTTTTTGAACATGCCATGCTC-GAGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTT
381 AGCAATTTTCCAAACATTCCATGCTCTGAGAAATCACACCATTTGGTCTAAATAGTTTGTCATTT
* * * *
24691293 TGT-AATAACTTTTGGTC-TTAGAATTAAAAAGTTATTTA-ATTGAGAATTGTTTCTCCCTTGCT
446 TGTAAACAACTTTTTGTCTTTA-AATTAAAAA-CTATTTACA-TGAGAATTGTTTCTCTCTTGCT
* * * * *
24691355 TTTTGGCTA-AACTTTCGAACTTGTCAAACACTTACGAGTT-TTTATATTACTTTGGTTCCTTAA
508 TCTTGGC-AGAACTTCCGAACTTGTCAAAC-TTTAAGAGTTCTTT-TATAACTTTGGTTCCTTAA
* * * * * * *
24691418 AGTACTCAAGACGA-CCATTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCAGGAAATCGCATC
570 AGTATTCAAGACAATTCATTCCTTCAAGCAATTTTACGAACATTCCATGCTCGGGAAATCGCATC
24691482 ATTTGGTCT
635 ATTTGGTCT
* *
24691491 AAATAGTTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAATGTTATTTAAATGAGAAT
1 AAATAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAAT
* * ** * *
24691556 TGTTTCTCTCTCTTGCTTATTGGCAGAACTCCCGAAA-TTGT-TTAC-TTTCATGAGTTCTTATA
65 TG-TT-TCTCTCTTGCTTCTTGGCAGAACTTCC-AAACTTGTCAAACATTT-AAGAGTTCTTTTA
* * * * * * *
24691618 TAACTTTGGTTCCTTAAAGTATTCAAGACAATACATTCCTTCGAGCAA-TTTCCTGAACATTCCA
126 TAACTTCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTC-AAACATTCCA
* *** * * * * * *
24691682 TTCTC-GGAAATTACATCATTTGGTTTAAATAGTTTTTTATTTTGTAAACAACTTTTGGTCTTTA
190 TGCTCGGGAAACCGCA-CATTTGGTCTAAATAGTTTGTCATTTTCT-AACAACTTTTGATCTTTG
* * * * * * * * *
24691746 AATTAAAAATTATTTAAATGAGAATTGTTTCTCTCTTGCTTCTTGACAGAACTTCCGAACTTGTC
253 AATTAAAAA-CATTTACATGACAATTGATTCTCTCTTGGTTCTTGGCAGAACTTCCAAAATTGTT
* * ** * * * * *
24691811 AAACTTTTACAAGTTTTTTTATAACTTCAATTCCTTAAAGTACTTAAGACTATCCATTCCTTCGA
317 AAACATTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGAACCATTCCTTCGA
** * ** *
24691876 GCAATTTTCTGAACATTCCATGCTC-GGGAAATCGTACCATTTGCTCTAAATAGTTTGTCATTTT
382 GCAATTTTCCAAACATTCCATGCTCTGAGAAATCACACCATTTGGTCTAAATAGTTTGTCATTTT
* * * * *
24691940 GCAAACAACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATTTTTTTGTCTCTTGTTTC
447 GTAAACAACTTTTTGTCTTTAAATTAAAAACT-ATTTACATGAGAA-TTGTTTCTCTCTTGCTTC
* * *
24692005 TTGG-ACGAGCTTCCGAACTTGTCAAACATTT-AGAGTTCTTTTATATCTTCGGTTCC-TAAGAG
510 TTGGCA-GAACTTCCGAACTTGTCAAAC-TTTAAGAGTTCTTTTATAACTTTGGTTCCTTAA-AG
** * * * * *
24692067 TATTCAAGATGA-TCTATTCCTTCGACCGATTTTACGAACATTTCATGCTCGGGAAATCACATCA
572 TATTCAAGACAATTC-ATTCCTTCAAGCAATTTTACGAACATTCCATGCTCGGGAAATCGCATCA
**
24692131 TTCAGTCT
636 TTTGGTCT
* * * *** *
24692139 AAA-AGTTTGTTATTTTGTAATA-AACTTTTTTGTCTTTGAATTAAAAA--CATTTTCGTCAGAA
1 AAATAGTTTGTCATTTTGTAA-ACAAC-TTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAA
* * * * * *
24692200 TTGTTTCT-TCTTGGTTC-TGGATAGAACTTCCAAACTTGTTATAC-TTCTATGAGTTCTTTTAG
64 TTGTTTCTCTCTTGCTTCTTGG-CAGAACTTCCAAACTTGTCAAACATT-TAAGAGTTCTTTTAT
* * * * *
24692262 AAATTTGGTTCCGTAAAGTATTCAAAACGATCCATTCCTTCGAGC-ATTTTTCCCAACATTCCAT
127 AACTTCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTT-CAAACATTCCAT
* *** ** * * **
24692326 TCTCAATAAATTGCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTTGA
191 GCTCGGGAAACCGCA-CATTTGGTCTAAATAGTTTGTCATTTTCT-AACAACTTTTGATCTTTGA
* * * * * *
24692391 A-T------ATTTACGTGAGAATTGCTTCTCTCTAGGTTCTTGG-ACGAACTTCCAAACTTGTCA
254 ATTAAAAACATTTACATGACAATTGATTCTCTCTTGGTTCTTGGCA-GAACTTCCAAAATTGTTA
* * * * * *
24692448 AATATTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACTATCCATTCCTTCGAG
318 AACATTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAG
** * * * * *
24692513 CAATTTTCTGAGCATTCCATGCTC-GGGAAATCGCAGCATTTGCTCTAAATAGTTTGTCATTTTG
383 CAATTTTCCAAACATTCCATGCTCTGAGAAATCACACCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * * *
24692577 CAAACAAC-TTTTGTCTTTAAATTTAAAACTAATTTACGTGAGAATTTTTTTGTCTCTTGGTTCT
448 TAAACAACTTTTTGTCTTTAAATTAAAAACT-ATTTACATGAGAA-TTGTTTCTCTCTTGCTTCT
* * *
24692641 TGG-ATGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTATATAACATCGGTTCC-TAAGAGT
511 TGGCA-GAACTTCCGAACTTGTCAAAC-TTTAAGAGTTCTTTTATAACTTTGGTTCCTTAA-AGT
** * * * *
24692704 ATTCAAGATGA-TCTATTCCCTCGACCAATTTTACGAACATTTCATGCTCGGGAAATCGCATCAT
573 ATTCAAGACAATTC-ATTCCTTCAAGCAATTTTACGAACATTCCATGCTCGGGAAATCGCATCAT
**
24692768 TCAGTCT
637 TTGGTCT
* * ** *
24692775 AAATAGTTTGTCATTTTGTAATA-AACTTTTTTGTCTTTGAATTAAAAA--CATTTCTATCAGAA
1 AAATAGTTTGTCATTTTGTAA-ACAAC-TTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAA
* * * * * *
24692837 TTGTTTCTCTCTTGGTTCTGGGCAGAACTTCCAAACTTGTTATAC-TTCTATGAGTTCTTTTAGA
64 TTGTTTCTCTCTTGCTTCTTGGCAGAACTTCCAAACTTGTCAAACATT-TAAGAGTTCTTTTATA
* * * * * * * *
24692901 AATTTGGTTCAGTAAAGTATTCAAAACGATCCATTCCTTCGAGC-ATTTTCCCAACATTCCATTC
128 ACTTCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGC
* ** * **
24692965 TCAGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTTGAAT
193 TCGGGAAACCGCA-CATTTGGTCTAAATAGTTTGTCATTTTCT-AACAACTTTTGATCTTTGAAT
* * * * * * *
24693030 TAAAAACATATTTACGTGAGAACTGTTTCTCTCTAGGTTCTTGG-ACGAACTTCCAAACTTGTCA
256 TAAAAAC--ATTTACATGACAATTGATTCTCTCTTGGTTCTTGGCA-GAACTTCCAAAATTGTTA
* * * * * * * * * * *
24693094 AATATTTAAGAGTTCTTTTATAACTTTGTTTCTTTAAAGTAGTCAAGATGATCCATTCCTTTGAC
318 AACATTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAG
* *
24693159 CAATTTTCCAAACATTCCATGCTC-G-GAAATCACATCATTTGGTTTAAATAGTTTGGT-ATTTT
383 CAATTTTCCAAACATTCCATGCTCTGAGAAATCACACCATTTGGTCTAAATAGTTT-GTCATTTT
* * * * * * * * *
24693221 CT-AATAACTTTTTATCTTTGAATTAAAAAC-ATTTTCGTGATAATAGTTTCTCTCTTGGTTCTT
447 GTAAACAACTTTTTGTCTTTAAATTAAAAACTATTTACATGAGAATTGTTTCTCTCTTGCTTCTT
* * * * * * *
24693284 GGCAGAACTTTCGAAATTGTTATACTTTCATGAGTTCTTTTATAAGTTTTGTTCCTTAAAGTATT
512 GGCAGAACTTCCGAACTTGTCAAACTTT-AAGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * * ** * * *
24693349 CAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCGAGAAATCGCATCATTTAG
576 CAAGACAATTCATTCCTTCAAGCAATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGG
*
24693414 ACT
641 TCT
* * * * **
24693417 AAATAGTTTGTCATTTTGTAAACAACCTTTT-GTCTTTAAAGTAAAAACTAATTTACGTGAGAAT
1 AAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAAT
* * * * ** **
24693481 TATTTCACTCTTGGTTCCTGG-ACGAAGATCTGAACTTGTCAAACA-TTAACGAGTTC-TTTATA
65 TGTTTCTCTCTTGCTTCTTGGCA-GAACTTCCAAACTTGTCAAACATTTAA-GAGTTCTTTTATA
* * * * * * * * **
24693543 ACTTTGATT-CTTGAGAGTGTTCAAGATGATCCATTCCCTCAACCAATTTTTTGAACATTCCATG
128 ACTTCGGTTCCGT-AAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATG
* * * * * * * * * * *
24693607 CTTGAGAAATCACATCAATTGTTCTAAATATTTTGTAATTTTGT-A-AACATTTTGTGTCTTTAA
192 CTCGGGAAACCGCA-CATTTGGTCTAAATAGTTTGTCATTTTCTAACAAC-TTTTG-ATCTTTGA
* * * ** * * * *
24693670 ATTAAAAATTTATTTACACGAGAACAGTTTTCTCTCTTGGTTCTTAG-ACGAACTTCCGAACTTG
254 ATTAAAAA--CATTTACATGACAATTG-ATTCTCTCTTGGTTCTTGGCA-GAACTTCCAAAATTG
* * * * * * * * *
24693734 TT-AACATTTACGAGTTCTTTTAAAACTTCGGTTACTGAGAGTATTCAAGACGATCCATTCCTTC
315 TTAAACATTCATGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGAACCATTCCTTC
* * ** * * * * * *
24693798 GACCAATATTCTGAACATTTCATTCT-TGAGAAATCGCATCA-TTGAGTGC-AAATAGTTTTTAA
380 GAGCAATTTTCCAAACATTCCATGCTCTGAGAAATCACACCATTTG-GT-CTAAATAGTTTGTCA
* * * * *
24693860 TTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACTGATTCACGTGAGAATTGTTTCTCTCTTGG
443 TTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACT-ATTTACATGAGAATTGTTTCTCTCTTGC
* * * * *
24693924 TTCTTGG-ATGAA-TTACAGAACCTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTA
507 TTCTTGGCA-GAACTT-CCGAACTTGTCAAAC-TTTAAGAGTTCTTTTATAACTTTGGTTCCTTA
* * * * * * * *
24693987 CAGTATTAAAGGCGATCCATTCCTCCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATTGCAT
569 AAGTATTCAAGACAATTCATTCCTTCAAGCAATTTTACGAACATTCCATGCTCGGGAAATCGCAT
*
24694052 CATTTGGTTT
634 CATTTGGTCT
* * * ** *
24694062 TAATAGTTTGTTATTTTGTAATA-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAAT
1 AAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAAT
* * * *
24694126 TTTTTCTCTCTTG-TTCTTTG-ACGAACTTCCGAACTGGTCAAACATTTAAGAGTTCTTTTATAA
65 TGTTTCTCTCTTGCTTCTTGGCA-GAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAA
* * *
24694189 C-TCTGGTTCC-TGAGAGTATTCAAGACGATTCATTCCTTCGACCAATTTTTCAAACATTCCATT
129 CTTC-GGTTCCGT-AAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATG
** ** * * *
24694252 CTAAGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAATAAACTTTTGGTCTTTGAA
192 CTCGGGAAACCGCA-CATTTGGTCTAAATAGTTTGTCATTTTCTAA-CAACTTTTGATCTTTGAA
24694317 TTAAAAA
255 TTAAAAA
24694324 TTTTCTACGT
Statistics
Matches: 5856, Mismatches: 1146, Indels: 885
0.74 0.15 0.11
Matches are distributed among these distances:
616 10 0.00
617 14 0.00
618 16 0.00
619 14 0.00
620 19 0.00
621 21 0.00
622 23 0.00
623 14 0.00
624 21 0.00
625 27 0.00
626 12 0.00
627 16 0.00
628 13 0.00
629 3 0.00
630 2 0.00
631 1 0.00
632 3 0.00
633 1 0.00
634 1 0.00
635 83 0.01
636 356 0.06
637 165 0.03
638 159 0.03
639 23 0.00
640 150 0.03
641 109 0.02
642 421 0.07
643 356 0.06
644 310 0.05
645 391 0.07
646 1040 0.18
647 547 0.09
648 333 0.06
649 41 0.01
650 283 0.05
651 19 0.00
652 19 0.00
653 26 0.00
654 25 0.00
655 30 0.01
656 18 0.00
657 28 0.00
658 23 0.00
659 26 0.00
660 20 0.00
661 9 0.00
662 3 0.00
663 2 0.00
664 4 0.00
665 4 0.00
666 1 0.00
667 7 0.00
668 4 0.00
671 2 0.00
672 5 0.00
673 4 0.00
674 1 0.00
675 6 0.00
676 3 0.00
677 2 0.00
680 1 0.00
681 4 0.00
682 6 0.00
683 3 0.00
684 2 0.00
685 4 0.00
686 2 0.00
688 3 0.00
691 1 0.00
692 4 0.00
693 5 0.00
694 8 0.00
695 8 0.00
696 6 0.00
697 7 0.00
698 5 0.00
699 5 0.00
700 7 0.00
701 8 0.00
702 7 0.00
703 7 0.00
704 5 0.00
705 5 0.00
708 2 0.00
711 4 0.00
712 1 0.00
713 7 0.00
714 2 0.00
715 6 0.00
716 1 0.00
717 2 0.00
719 1 0.00
720 2 0.00
721 1 0.00
722 9 0.00
723 2 0.00
724 3 0.00
725 4 0.00
726 1 0.00
728 5 0.00
729 6 0.00
731 2 0.00
732 7 0.00
733 3 0.00
734 2 0.00
735 2 0.00
736 4 0.00
737 3 0.00
738 6 0.00
739 12 0.00
740 8 0.00
741 7 0.00
742 3 0.00
744 2 0.00
745 5 0.00
746 2 0.00
748 4 0.00
749 66 0.01
750 30 0.01
751 140 0.02
752 85 0.01
753 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (643 bp):
AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATT
GTTTCTCTCTTGCTTCTTGGCAGAACTTCCAAACTTGTCAAACATTTAAGAGTTCTTTTATAACT
TCGGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGCTCG
GGAAACCGCACATTTGGTCTAAATAGTTTGTCATTTTCTAACAACTTTTGATCTTTGAATTAAAA
ACATTTACATGACAATTGATTCTCTCTTGGTTCTTGGCAGAACTTCCAAAATTGTTAAACATTCA
TGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGCAATTTTC
CAAACATTCCATGCTCTGAGAAATCACACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
TTTTTGTCTTTAAATTAAAAACTATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGCAGAACT
TCCGAACTTGTCAAACTTTAAGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATT
CATTCCTTCAAGCAATTTTACGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT
Found at i:24688807 original size:105 final size:104
Alignment explanation
Indices: 24688602--24688813 Score: 248
Period size: 105 Copynumber: 2.0 Consensus size: 104
24688592 CATTTGGTCT
** * *
24688602 AAATAGTTTGTTATTTTGTAAACAACTTTTTTCTTTAAAGTAAAAACTTATTTACGTGAGAATTG
1 AAATAGTTTGTTATTTTGTAAACAACTTTTGCCTTTAAAGTAAAAACTTACTTACGAGAGAATTG
** * *
24688667 TTTTCACCCTTGGTTCTTGGACGAACATCCGAACTTGTC
66 TTTTCACCCAAGGTTCTTAGACGAACATCCAAACTTGTC
* *
24688706 AAATAGTTT-TTCATTTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTACTTACGAGAGAA
1 AAATAGTTTGTT-A-TTTTGTAAACAACTTTT-GCCTTTAAAGTAAAAACTTACTTACGAGAGAA
* * * * *
24688770 TTG-TTTCTCTCAAGGTTCTTAGATGAACTTCCAAACTTTTC
63 TTGTTTTCACCCAAGGTTCTTAGACGAACATCCAAACTTGTC
24688811 AAA
1 AAA
24688814 CATTTAAGAG
Statistics
Matches: 90, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
103 2 0.02
104 10 0.11
105 49 0.54
106 29 0.32
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.41
Consensus pattern (104 bp):
AAATAGTTTGTTATTTTGTAAACAACTTTTGCCTTTAAAGTAAAAACTTACTTACGAGAGAATTG
TTTTCACCCAAGGTTCTTAGACGAACATCCAAACTTGTC
Found at i:24689221 original size:535 final size:534
Alignment explanation
Indices: 24688171--24689244 Score: 1489
Period size: 535 Copynumber: 2.0 Consensus size: 534
24688161 CTATTTGGTC
* * * *
24688171 CAAATAGTTTTTCATTTTGTGAACGACTTTTGGTCTTTGAATTAAAAAGTTACTTAAATGAGAAT
1 CAAATAGTTTTTCATTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTACTTAAATGAGAAT
* *** * * * * *
24688236 TTTTTCTCCCTTTCTTCTTGACCGAATTTTCGAACTTGTTAAACATTTAAGAGTTCTTTGATAAC
66 TGTTTCTCCCAAGCTTCTTGACCGAACTTCCAAACTTGTTAAACATTTAAGAGTTATTTGACAAC
* *
24688301 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTTATTCGACCAATTTTTCAAACATTCCATGCTC
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGACCAATTTTCCAAACATTCCATGCTC
* *
24688366 AGGAAACCGCATCATTTGGTTTCAATAGTTCGTCAGTTTCTAATAACTTTTTATCTTTGAATTAA
196 AGGAAACCACATCATTTGGTTTAAATAGTTCGTCAGTTTCTAATAACTTTTTATCTTTGAATTAA
* * ** *
24688431 AAACATTTTCGTGACAATTGTTTTTCTCTTGGTTCTTGGCAGAACTTTCAAAATTTTTATACTTT
261 AAACATTTTCGTCACAATTGTTTCTCTCTTGGTTCTTGGCAGAACTCCCAAAATTGTTATACTTT
*
24688496 CATGAGTTCTTTTATATACTTCAGTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGCAATT
326 CATGAGTTCTTTTATATACTTCACTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGCAATT
* * *
24688561 TTCTGAATAATCCATGTTCGGGAAATCGCAACATTTGGTCTAAATAGTTTGTTATTTTGTAAACA
391 TTCTCAATAATCCATGCTCGGGAAATCGCAACATTTGGTCTAAATAGTTTGTTATTTTATAAACA
* ** * *
24688626 ACTTTTTTCTTTAAAGTAAAAACTTATTTACGTGAGAATTGTTTTCACCCTTGGTTCTTGGACGA
456 ACTTTTGTCTTTAAAGTAAAAACTTATTTAAATGAGAATTGTTTTCACCCTTGCTTCTTGGACAA
24688691 ACATCCGAACTTGT
521 ACATCCGAACTTGT
*
24688705 CAAATAGTTTTTCATTTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTACTTACGA-GAGA
1 CAAATAGTTTTTCA-TTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTACTTA-AATGAGA
* * * *
24688769 ATTGTTTCTCTCAAGGTTCTTAGA-TGAACTTCCAAACTT-TTCAAACATTTAAGAGTTATTTTA
64 ATTGTTTCTCCCAAGCTTCTT-GACCGAACTTCCAAACTTGTT-AAACATTTAAGAGTTATTTGA
* * * * *
24688832 CAACTTCGGTTCGTTAAAGTGTTCAAGATGATCCATTCCTTCGACCAATTTTCCAAACATTTCAT
127 CAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGACCAATTTTCCAAACATTCCAT
* * *
24688897 GCTCGGGAAATCACATCATTTGGTTTAAATAGTTCGTCATTTTCTAATAAACTTTTTATCTTTGA
192 GCTCAGGAAACCACATCATTTGGTTTAAATAGTTCGTCAGTTTCTAAT-AACTTTTTATCTTTGA
*
24688962 ATTAAAAACATTTTCGTCACAATTGTTTCTCTCTTGGTTCTTGGTAGAACTCCCAAAATTGTTAT
256 ATTAAAAACATTTTCGTCACAATTGTTTCTCTCTTGGTTCTTGGCAGAACTCCCAAAATTGTTAT
*
24689027 ACTTTCATGAGTTCTTTTATA-ACTTCACTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
321 ACTTTCATGAGTTCTTTTATATACTTCACTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAG
*
24689091 CAATTTT-TCAA-ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TTCATTT
386 CAATTTTCTCAATA-A-TCCATGCTCGGGAAATCGCAACATTTGGTCTAAATAGTTTGTT-ATTT
* * * * * **
24689153 TATAAATAACTTTTGGTCTTTAAATTAAATAGTTATTTAAATGAGAATTG-TTTCTCTTTTGCTT
448 TATAAACAACTTTT-GTCTTTAAAGTAAAAACTTATTTAAATGAGAATTGTTTTCACCCTTGCTT
* ** *
24689217 CTTGGCCAAATTTCTGAACTTGT
512 CTTGGACAAACATCCGAACTTGT
24689240 CAAAT
1 CAAAT
24689245 TTTTACGAGT
Statistics
Matches: 473, Mismatches: 58, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
533 1 0.00
534 22 0.05
535 322 0.68
536 128 0.27
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (534 bp):
CAAATAGTTTTTCATTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTACTTAAATGAGAAT
TGTTTCTCCCAAGCTTCTTGACCGAACTTCCAAACTTGTTAAACATTTAAGAGTTATTTGACAAC
TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGACCAATTTTCCAAACATTCCATGCTC
AGGAAACCACATCATTTGGTTTAAATAGTTCGTCAGTTTCTAATAACTTTTTATCTTTGAATTAA
AAACATTTTCGTCACAATTGTTTCTCTCTTGGTTCTTGGCAGAACTCCCAAAATTGTTATACTTT
CATGAGTTCTTTTATATACTTCACTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGCAATT
TTCTCAATAATCCATGCTCGGGAAATCGCAACATTTGGTCTAAATAGTTTGTTATTTTATAAACA
ACTTTTGTCTTTAAAGTAAAAACTTATTTAAATGAGAATTGTTTTCACCCTTGCTTCTTGGACAA
ACATCCGAACTTGT
Found at i:24689744 original size:215 final size:215
Alignment explanation
Indices: 24688706--24694404 Score: 3874
Period size: 215 Copynumber: 26.6 Consensus size: 215
24688696 CGAACTTGTC
* * * *
24688706 AAATAGTTTTTCATTTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTACTTACGAGAGAAT
1 AAATAGTTTGTCA-TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAAT
** * * * * * * * *
24688771 TGTTTCTCTCAAGGTTCTTAGATGAACTTCCAAACTTTTCAAACATTTAAGAGTTATTTTACAAC
64 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * *
24688836 TTCGGTTCGTTAAAGTGTTCAAGATGATCCATTCCTTCGACCAATTTTCCAAACATTTCATGCTC
129 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
* *
24688901 GGGAAATCACATCATTTGGTTT
194 GGGAAATCGCATCATTTGGTCT
* * ** * * * *
24688923 AAATAGTTCGTCATTTTCTAATA-AACTTTTTATCTTTGAATTAAAAA-CATTTTCGTCACAATT
1 AAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAATTATTTACGTGAGAATT
* * * * * * *
24688986 GTTTCTCTCTTGGTTCTTGGTA-GAACTCCCAAAATTGTTATACTTTCATGAGTTCTTTTATAAC
65 GTTTCTCTCTTGGTTCTTGG-ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
** * *
24689050 TTCACTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTC
129 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
24689115 GGGAAATCGCATCATTTGGTCT
194 GGGAAATCGCATCATTTGGTCT
* * * * * **
24689137 AAATAGTTTTTCATTTTATAAATAACTTTTGGTCTTTAAATTAAATAGTTATTTAAATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA-AATTATTTACGTGAGAATT
* * * * * * * * *
24689202 GTTTCTCTTTTGCTTCTTGGCCAAATTTCTGAACTTGTCAAATTTTTACGAGTTCATTTATTACT
65 GTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * *
24689267 TCGGTTCCTTAAAGTACTCAAGACTATCCCTTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-
130 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCG
** * * *
24689331 GGACAATTACACCATTTGCTCA
195 GGA-AATCGCATCATTTGGTCT
* * * * *
24689353 AAATAGTTTGTCATTTTGTAAACAACTTTTTGTCATTAAATTAAAAACTAATTTATGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAATT
* * * * * *
24689418 TTTTGTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACATTTAAGAGTTCTTTTATAAAT
65 GTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * ** *
24689483 TTGATTCCTGAGAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTTTGAACATTCAATGCTCG
130 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCG
*
24689548 GGAAATCGCATAATTTGGTCT
195 GGAAATCGCATCATTTGGTCT
* * * ** *
24689569 AAATTGTTTGTCATTTTGTAAAGAAATTTTGGTCTTT-AATTTAAAAAGTTATTTAAATTAGAAT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAA-TTATTTACGTGAGAAT
** * *
24689633 TGTTTCTCTCTTTCTTCTT-GCCGAACTTCCGAACTTATCAAACTTTTACGAGTTCTTTTATAAC
64 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * *
24689697 TTCGGTTCCTTGAAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCCAAACATTCCATGCTC
129 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
** *
24689762 GGGAAATCATATCATTTGGTTT
194 GGGAAATCGCATCATTTGGTCT
* * ** * * *
24689784 AAATAGTTCGTCATTTTCTAATA-AACTTTTTATCTTTGAATTAAAAA-CATTTTCGTGACAATT
1 AAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAATTATTTACGTGAGAA-T
* ** ** * * * * *
24689847 TTTTTCTCTCTTGGTTCTTGGAAAAACTTTTGAAATTGTTATACTTTCATGAGTTCTTTTATAAC
64 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* *
24689912 TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTC
129 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
** *
24689977 GATAAATCACATCATTTGGTCT
194 GGGAAATCGCATCATTTGGTCT
* ** *
24689999 AAATAGTTTGTCATTTTGTAAACAAATTTTTTTCTTTGAAGTAAAAACTTATTTACGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAATT
* * * * *
24690064 GTTTTCACTCTTGGTTCCTGGACGAACATCCGAACTTGTCAAACATTAACGAGTTCTTTTATAAC
65 G-TTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * * * *
24690129 TTTGATT-CTTGAGAGTGTTCAAGATGATCC-TTACCTACGACCAATTTTCCGAATATTCCATGC
129 TTCGGTTCCTT-AAAGTATTCAAGACGATCCATT-CCTTCGAGCAATTTTCCGAACATTCCATGC
* *
24690192 TCGAGAAATCACATCATTTGGTCT
192 TCGGGAAATCGCATCATTTGGTCT
* * * * * * * *
24690216 AAATAGTTTGTAACTTTGTGAACAGCTTTTTGTCTTTAAATTAAAAATTTATTTCCGTGAGAATA
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAATT
* * * *
24690281 GTTTCTCCCTTGGTTGTTGGACGAACTTTCGAACTTG-CTAAAC--TTATGAGTTCTTTTATAAC
65 GTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC-AAACTTTTACGAGTTCTTTTATAAC
* * * * * * * * *
24690343 TTCGGATACTGAGAGTATTCAAGACAATCCATTCCTTCGATCAATTGTCTGAACATTCCATCCTC
129 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
**
24690408 GGGAAATCGCATCATTAAGTCT
194 GGGAAATCGCATCATTTGGTCT
* * * * * **** *
24690430 AAATAGTTTTTAATTTTG-AAA-AAC-TTTGGTCATTAAATTAAAGTATTAAAGGCGATCA-AAT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA-AATTATTTACG-TGAGAAT
* * ** * * * * *** **
24690491 T-TTCCGAGCAATT--TT-TTGAAC-ATTCCATGCTCGAGAAATTGCATCATTTGGTTTTAATAG
64 TGTTTC--TCTCTTGGTTCTTGGACGA--AC-T--TC-CGAACTTG--TCA--AACTTTTACGAG
* ** * * * * * **
24690551 TTTGTCATTTTGTAAAAAAACTTTTGAT-CTT--TGTATTAAAAAC--T-TATTTATGT-GAG-A
117 --T-TC--TTT-T---ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCA
* ** ** * * * * *
24690608 ATCGTTCCTG-AC-TT-GGTTTTTGAACGAACTTC-CA-AACTT-G--T
172 AT-TTTCC-GAACATTCCATGCTCG--GGAA-ATCGCATCATTTGGTCT
*** * * * * ** * * *
24690649 AAATTA-TTTAAGAGTTCTT-T-CATAAC-TTCGATTCCTGAGAGTATTCAAGACGATCCA-TTC
1 AAA-TAGTTTGTCA-TT-TTGTAAACAACTTTTG-GT-CTTTGA--ATT-AA-A-AAT-TATTTA
* * ** ** * * * * *
24690709 CTTCGACCAATT-TTT-TGAACATTCCATTATCGG--GAAATTGC-ATCATTTCGTCTAAA-TAG
55 CGT-GA-GAATTGTTTCT-CTC-TT-GGTTCTTGGACGAACTTCCGA--ACTT-GTC-AAACT--
* * * * * * * * **
24690768 TTTGTC-A-TT-TTGTAATAAACTTTTGG-T-CTT--TGAATTAAAAAC--T-TATTTATGTC-A
109 TTT-ACGAGTTCTT-TTAT-AAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGA
* *** * * * * * * ** *
24690822 G-AATTGTTTCTCTC-TT--GTTCTTGGATGAACT-TC-TAAACTAGTC-
169 GCAATT-TTCCGAACATTCCATGCTCGG--GAAATCGCATCATTTGGTCT
* * * *** * * *
24690865 AAA-A-TTT-TACGTGTTCCT-TTAAC-ATTTTTTCCCTATT-ATTTACGTGAGAATTGTTT-C-
1 AAATAGTTTGT-CAT-TT--TGTAAACAACTTTTGGTCT-TTGAATTA----AAAATTATTTACG
*** * **** ** * * *
24690922 T--CTCTTGGTTCT-TGGACGAACTT--TCGAACTT--G------TCAAACATTTATGAGTTCTT
57 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * * * * *
24690974 TTCTAACTTTGGATCCTTAAAGTATTCAAGACGATCCATT-TTGTCGAG-AAATTTGC-AAGCAT
122 TTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAATTTTCCGAA-CAT
** *
24691036 TCCATGCTTAGG-AATCACATCATTTGGTCT
185 TCCATGCTCGGGAAATCGCATCATTTGGTCT
* * * * ** *
24691066 AAATAGTTTTTTATCTTGTCAACAACGCTTGGTCTTTGAATTAAAAACTTATTTACAT--G-A--
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAATT
* * * * * *
24691126 -TTTCTCTCTTGCTTCCTGGCCGAACTTTCGAAGTTGTCAAAGTTTTACGAGTTCTTTTATAACT
65 GTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * * * ** *
24691190 TCGATTCCTTAAAGTACTCAAGACTATATACTTTCCTTCAAG-GATTTTTTGAACATGCCATGCT
130 TCGGTTCCTTAAAGTATTCAAGAC--GATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCT
* *
24691254 CGAGAAATCGCACCATTTGGTCT
193 CGGGAAATCGCATCATTTGGTCT
* * **
24691277 AAATAGTTTGTCATTTTGT-AATAACTTTTGGTCTTAGAATTAAAAAGTTATTTAATTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAATT
* * * * * ** *
24691341 GTTTCTCCCTTGCTTTTTGG-CTAAACTTTCGAACTTGTCAAACACTTACGAGTT-TTTATATTA
65 GTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAA
* * *
24691404 CTTTGGTTCCTTAAAGTACTCAAGACGA-CCATTCCTTCGAGCAATTTTCCGAGCATTCCATGCT
128 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCT
*
24691468 CAGGAAATCGCATCATTTGGTCT
193 CGGGAAATCGCATCATTTGGTCT
* * **
24691491 AAATAGTTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAATGTTATTTAAATGAGAAT
1 AAATAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA-ATTATTTACGTGAGAAT
* * * * ** * * *
24691556 TGTTTCTCTCTCTTGCTTATTGG-CAGAACTCCCGAAATTGT-TTACTTTCATGAGTTCTTATAT
64 TG-TT-TCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * *
24691619 AACTTTGGTTCCTTAAAGTATTCAAGACAATACATTCCTTCGAGCAA-TTTCCTGAACATTCCAT
126 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC-GAACATTCCAT
* ** *
24691683 TCTC-GGAAATTACATCATTTGGTTT
190 GCTCGGGAAATCGCATCATTTGGTCT
* * * **
24691708 AAATAGTTTTTTATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAATTATTTAAATGAGAATTG
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAATTATTTACGTGAGAATTG
* * *
24691773 TTTCTCTCTTGCTTCTT-GACAGAACTTCCGAACTTGTCAAACTTTTACAAGTTTTTTTATAACT
66 TTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
** * *
24691837 TCAATTCCTTAAAGTACTT-AAGACTATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
130 TCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
* * *
24691901 GGGAAATCGTACCATTTGCTCT
194 GGGAAATCGCATCATTTGGTCT
* * * *
24691923 AAATAGTTTGTCATTTTGCAAACAACTTTTTGTCTTTAAATTAAAAACTAATTTACGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAA-T
* * * * * *
24691988 TTTTTGTCTCTTGTTTCTTGGACGAGCTTCCGAACTTGTCAAACATTTA-GAGTTCTTTTATATC
64 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * *
24692052 TTCGGTTCC-TAAGAGTATTCAAGATGATCTATTCCTTCGACCGATTTTACGAACATTTCATGCT
129 TTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCT
* **
24692116 CGGGAAATCACATCATTCAGTCT
193 CGGGAAATCGCATCATTTGGTCT
* * * * *
24692139 AAA-AGTTTGTTATTTTGTAATA-AACTTTTTTGTCTTTGAATTAAAAA-CATTTTCGTCAGAAT
1 AAATAGTTTGTCATTTTGTAA-ACAAC-TTTTGGTCTTTGAATTAAAAATTATTTACGTGAGAAT
* * * * * * *
24692201 TGTTTCT-TCTTGGTTC-TGGATAGAACTTCCAAACTTGTTATACTTCTATGAGTTCTTTTAGAA
64 TGTTTCTCTCTTGGTTCTTGGA-CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * * *
24692264 ATTTGGTTCCGTAAAGTATTCAAAACGATCCATTCCTTCGAGCATTTTTCCCAACATTCCATTCT
128 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCT
*** * *
24692329 CAATAAATTGCATCATTTGGTTT
193 CGGGAAATCGCATCATTTGGTCT
*
24692352 AAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTTG-------AA-TATTTACGTGAGAATTG
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAATTATTTACGTGAGAATTG
* * * *
24692409 CTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAA-TATTTAAGAGTTCTTTTATAACT
66 TTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT-TTTACGAGTTCTTTTATAACT
* * * *
24692473 TCGGTTCCTTAAAGTACTCAAGACTATCCATTCCTTCGAGCAATTTTCTGAGCATTCCATGCTCG
130 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCG
* *
24692538 GGAAATCGCAGCATTTGCTCT
195 GGAAATCGCATCATTTGGTCT
* * * *
24692559 AAATAGTTTGTCATTTTGCAAACAACTTTT-GTCTTTAAATTTAAAACTAATTTACGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAATTATTTACGTGAGAA-T
* * * * * *
24692623 TTTTTGTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTAAGAGTTCTTATATAAC
64 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * * *
24692688 ATCGGTTCC-TAAGAGTATTCAAGATGATCTATTCCCTCGACCAATTTTACGAACATTTCATGCT
129 TTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCT
**
24692752 CGGGAAATCGCATCATTCAGTCT
193 CGGGAAATCGCATCATTTGGTCT
* * * *
24692775 AAATAGTTTGTCATTTTGTAATA-AACTTTTTTGTCTTTGAATTAAAAA-CATTT-CTATCAGAA
1 AAATAGTTTGTCATTTTGTAA-ACAAC-TTTTGGTCTTTGAATTAAAAATTATTTAC-GTGAGAA
* * * * * * *
24692837 TTGTTTCTCTCTTGGTTC-TGGGCAGAACTTCCAAACTTGTTATACTTCTATGAGTTCTTTTAGA
63 TTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * ** * * *
24692901 AATTTGGTTCAGTAAAGTATTCAAAACGATCCATTCCTTCGAGC-ATTTTCCCAACATTCCATTC
127 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGC
* *
24692965 TCAGGAAATTGCATCATTTGGTCT
192 TCGGGAAATCGCATCATTTGGTCT
* * *
24692989 AAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACATATTTACGTGAGAACT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAATT
* * *
24693054 GTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAA-TATTTAAGAGTTCTTTTATAAC
65 GTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT-TTTACGAGTTCTTTTATAAC
* * * * * * * *
24693118 TTTGTTTCTTTAAAGTAGTCAAGATGATCCATTCCTTTGACCAATTTTCCAAACATTCCATGCTC
129 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
* *
24693183 -GGAAATCACATCATTTGGTTT
194 GGGAAATCGCATCATTTGGTCT
* * ** * * * *
24693204 AAATAGTTTGGT-ATTTTCT-AATAACTTTTTATCTTTGAATTAAAAA-CATTTTCGTGATAATA
1 AAATAGTTT-GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAATTATTTACGTGAGAATT
* * * * * * *
24693266 GTTTCTCTCTTGGTTCTTGG-CAGAACTTTCGAAATTGTTATACTTTCATGAGTTCTTTTATAAG
65 GTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
** ** *
24693330 TTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTC
129 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
* * *
24693395 GAGAAATCGCATCATTTAGACT
194 GGGAAATCGCATCATTTGGTCT
* * *
24693417 AAATAGTTTGTCATTTTGTAAACAACCTTTT-GTCTTTAAAGTAAAAACTAATTTACGTGAGAAT
1 AAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAAT
* * * ** * * *
24693481 TATTTCACTCTTGGTTCCTGGACGAAGATCTGAACTTGTCAAACATTAACGAGTTC-TTTATAAC
64 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * * * * **
24693545 TTTGATT-CTTGAGAGTGTTCAAGATGATCCATTCCCTCAACCAATTTTTTGAACATTCCATGCT
129 TTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCT
* * * * *
24693609 TGAGAAATCACATCAATTGTTCT
193 CGGGAAATCGCATCATTTGGTCT
* * * ** *
24693632 AAATATTTTGTAATTTTGTAAAC-A-TTTTGTGTCTTTAAATTAAAAATTTATTTACACGAGAAC
1 AAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAATTAAAAA-TTATTTACGTGAGAAT
* * * * *
24693695 AGTTTTCTCTCTTGGTTCTTAGACGAACTTCCGAACTTGT-TAACATTTACGAGTTCTTTTAAAA
64 TG-TTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * * * *
24693759 CTTCGGTTACTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATATTCTGAACATTTCATTCT
128 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCT
* *
24693824 TGAGAAATCGCATCA-TTGAGTGC-
193 CGGGAAATCGCATCATTTG-GT-CT
* * * *
24693847 AAATAGTTTTTAATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACTGATTCACGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAATT
* * *
24693911 GTTTCTCTCTTGGTTCTTGGATGAA-TTACAGAACCTGTCAAACTTTTACGAGTTCTTTTATAAC
65 GTTTCTCTCTTGGTTCTTGGACGAACTT-CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * * *
24693975 TTCGATTCCTTACAGTATTAAAGGCGATCCATTCCTCCAAGCAATTTTTCGAACATTCCATGCTC
129 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
* *
24694040 GGGAAATTGCATCATTTGGTTT
194 GGGAAATCGCATCATTTGGTCT
* * *
24694062 TAATAGTTTGTTATTTTGTAATA-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAAT
1 AAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAAT
* * * * *
24694126 TTTTTCTCTCTT-GTTCTTTGACGAACTTCCGAACTGGTCAAACATTTAAGAGTTCTTTTATAAC
64 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * * *
24694190 -TCTGGTTCCTGAGAGTATTCAAGACGATTCATTCCTTCGACCAATTTTTCAAACATTCCATTCT
129 TTC-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCT
** *
24694254 AAGGAAATTGCATCATTTGGTCT
193 CGGGAAATCGCATCATTTGGTCT
*
24694277 AAATAGTTTGTCATTTTGTAATA-AACTTTTGGTCTTTGAATTAAAAATT-TTCTACGTCAGAAT
1 AAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAATTATT-TACGTGAGAAT
* * * * * *
24694340 TGTTTCTCTCTTTGTTCTTTGACGAACTTCCGAACTGGTCAAAATTTTACCAGTTCTTTTTTAAC
64 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
24694405 ATTAGTTCCC
Statistics
Matches: 4324, Mismatches: 909, Indels: 500
0.75 0.16 0.09
Matches are distributed among these distances:
192 5 0.00
193 8 0.00
194 10 0.00
195 4 0.00
196 8 0.00
197 4 0.00
198 17 0.00
199 17 0.00
200 15 0.00
201 15 0.00
202 12 0.00
203 4 0.00
204 1 0.00
205 7 0.00
206 26 0.01
207 144 0.03
208 51 0.01
209 6 0.00
210 61 0.01
211 67 0.02
212 163 0.04
213 211 0.05
214 663 0.15
215 1229 0.28
216 1044 0.24
217 330 0.08
218 71 0.02
219 9 0.00
220 10 0.00
221 13 0.00
222 10 0.00
223 20 0.00
224 6 0.00
225 12 0.00
226 18 0.00
227 7 0.00
228 6 0.00
229 15 0.00
231 3 0.00
232 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAATTATTTACGTGAGAATTG
TTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGG
GAAATCGCATCATTTGGTCT
Found at i:24694487 original size:90 final size:89
Alignment explanation
Indices: 24694329--24694502 Score: 215
Period size: 90 Copynumber: 1.9 Consensus size: 89
24694319 AAAAATTTTC
* * * *
24694329 TACGTCAGAATTGTTTCTCTCTTTGTTCTTTGACGAACTTCCGAACTGGTCAAAATTTTACCAGT
1 TACGTCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTGGTCAAAATTTTACCACT
*
24694394 TCTTTTTTAACATTAGTTCCCTATT
66 TCTTTTCTAAC-TTAGTTCCCTATT
* * * * **
24694419 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCCAACA-TTTATGAC
1 TACGTCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTGGT-CAAAATTTTACCAC
*
24694483 TTCTTTTCTAACTTGGTTCC
65 TTCTTTTCTAACTTAGTTCC
24694503 TTACAGTATT
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
89 7 0.10
90 60 0.85
91 4 0.06
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.44
Consensus pattern (89 bp):
TACGTCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTGGTCAAAATTTTACCACT
TCTTTTCTAACTTAGTTCCCTATT
Found at i:24695134 original size:735 final size:735
Alignment explanation
Indices: 24693698--24695148 Score: 1729
Period size: 735 Copynumber: 2.0 Consensus size: 735
24693688 CGAGAACAGT
* * *
24693698 TTTCTCTCTTGGTTCTTAGACGAACTTCCGAACTTGTTAACATTTACGAGTTCTTTTAAAACTTC
1 TTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAACATTTACGACTTCTTTTAAAACTTC
* * * * *
24693763 GGTTACTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATATTCTGAACATTTCATTCTTGAG
66 GGTTACTGACAGTATTCAAGACGATCCATTCCATCGAACAATATTCTGAACATTCCATGCTTGAG
24693828 AAATCGCATCATTGAGTGCAAATAGTTTTTAATTTTGTAAAAACTTTTGGTCTTTGAATTAAAAA
131 AAATCGCATCATTGAGTGCAAATAGTTTTTAATTTTGTAAAAACTTTTGGTCTTTGAATTAAAAA
* * *
24693893 CTGATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAATTACAGAACCTGTCAAACTTTT
196 CTGATTCACATAAGAATTGTTTCTCTCTTGCTTCTTGGATGAATTACAGAACCTGTCAAACTTTT
* * * *
24693958 ACGAGTTCTTTTATAACTTCGATTCCTTACAGTATTAAAGGCGATCCATTCCTCCAAGCAATTTT
261 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTAAAGACGATCCATTCCTCCAAGAAATTTT
* * * * * *
24694023 TCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTTTTAATAGTTTGTTATTTTGTAATAAAC
326 TCGAACATTCCATGCCCGGGAAATCGCACCATTTGGTCTAAATACTTTGTTATTTTGTAATAAAC
** * * * *
24694088 TTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTTTTTCTCTCTTGTTCTTTGACGAACT
391 TTTTGGTCTTTGAATTAAAAACTTATTTAAATCAGAATTGTTTCTCCCTCGTTCTCTGACGAACT
* * * * *
24694153 TCCGAACTGGTCAAACATTTAAGAGTTCTTTTATAACTCTGGTTCCTGAGAGTATTCAAGACGAT
456 TCCGAACTGGTCAAACATTTAAGAGTTCTTATATAACTCTGATTCCTGAAAGTACTCAAGACGAA
* * * * *
24694218 TCATTCCTTCGACCAATTTTTCAAACATTCCATTCTAAGGAAATTGCATCATTTGGTCTAAATAG
521 CCATTCCTTCAACCAATTTTCCAAACATTCCATTCTAAGGAAATCGCACCATTTGGTCTAAATAG
* * **
24694283 TTTGTCATTTTGTAATAAACTTTTGGTCTTTGAATTAAAAATTTTCTACGTCAGAATTGTTTCTC
586 TTTGTCATTTTGGAATAAACTTTTGGTCTTTAAATTAAAAATTTTCTAAATCAGAATTGTTTCTC
* * *
24694348 TCTTTGTTCTTTGACGAACTTCCGAACTGGTCAAAATTTTACCAGTTCTTTTTTA-ACATTAGTT
651 TCTTTGTTCTTGGACGAACTTCCGAACTGGTCAAAATTTTACCACTTCTTTTATATACATTAGTT
24694412 CCCTATTTACGTGAGAATTG
716 CCCTATTTACGTGAGAATTG
* * * **
24694432 TTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCCAACATTTATGACTTCTTTTCTAACTT
1 TTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGT-CAACATTTACGACTTCTTTTAAAACTT
* * * * *
24694497 -GGTTCCTTACAGTATTTCAAGAAC-ATCCATTTCATC-AAGAAT-TTTTCGAACATTCCATGCT
65 CGGTTACTGACAGTA-TTCAAG-ACGATCCATTCCATCGAACAATATTCT-GAACATTCCATGCT
* * * *
24694558 TGGGAAATCGCATTATTTAGT-CTAAATAGTTTTTCATTTTGTAAACAA-TGTTTGGTCTTTGAA
127 TGAGAAATCGCATCATTGAGTGC-AAATAGTTTTTAATTTTGTAAA-AACT-TTTGGTCTTTGAA
* * * * * *
24694621 TTAAAAACTTATTTACATAAGAATTTTTTCTCT-TCTGCTTCTTGGCTGAACTTTC-GAACTTGT
189 TTAAAAACTGATTCACATAAGAATTGTTTCTCTCT-TGCTTCTTGGATGAA-TTACAGAACCTGT
* * * *
24694684 CAAACTTTTACGAGTTCTTTTTTTAACTTC-AGTTCCTTAAAGTACTCAAGACTATATCCTTTCC
252 CAAACTTTTACGAGTTC-TTTTATAACTTCGA-TTCCTTAAAGTACTAAAGAC--GATCCATTCC
* *
24694748 TTCGAGAAATTTTTC-AACATTCCATGCCCGGGAAATCGCACCATTTGGTCTAAATACTTT-TTC
313 TCCAAGAAATTTTTCGAACATTCCATGCCCGGGAAATCGCACCATTTGGTCTAAATACTTTGTT-
* * *
24694811 ATTTTGTAATCAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCCTCG
377 ATTTTGTAATAAACTTTTGGTCTTTGAATTAAAAACTTATTTAAATCAGAATTGTTTCTCCCTCG
* * * * * * * *
24694876 CTT-TCTGGCTGAACTTTCGAAGTTG-CCAACATTTACGAGTTCTTATATAACTTTGATTCCTTA
442 -TTCTCTGAC-GAACTTCCGAACTGGTCAAACATTTAAGAGTTCTTATATAACTCTGATTCCTGA
* * * *
24694939 AAGTACTCAAGACGAACCATTCCTTCAAGCAATTTTCCGAACATTTCATGT-T-CGGAAATCGCA
505 AAGTACTCAAGACGAACCATTCCTTCAACCAATTTTCCAAACATTCCAT-TCTAAGGAAATCGCA
24695002 CCATTTGGTC-AAATAGTTTGTCATTTTGGAA-ACAACTTTTGGTCTTTAAATT-AAAATGTTAT
569 CCATTTGGTCTAAATAGTTTGTCATTTTGGAATA-AACTTTTGGTCTTTAAATTAAAAAT-TT-T
* * * * * * *
24695064 TTAAATGAGAATTGTTTCTCT-TTTGCTTCTTGGCCGAACTTCTG-ACTTGTCAAACTTTTACTA
631 CTAAATCAGAATTGTTTCTCTCTTTG-TTCTTGGACGAACTTCCGAACTGGTCAAAATTTTACCA
*
24695127 CTTCTTTTATATACTTTAGTTC
695 CTTCTTTTATATACATTAGTTC
24695149 TTAAAGTACT
Statistics
Matches: 602, Mismatches: 93, Indels: 42
0.82 0.13 0.06
Matches are distributed among these distances:
733 4 0.01
734 108 0.18
735 188 0.31
736 94 0.16
737 173 0.29
738 35 0.06
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (735 bp):
TTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAACATTTACGACTTCTTTTAAAACTTC
GGTTACTGACAGTATTCAAGACGATCCATTCCATCGAACAATATTCTGAACATTCCATGCTTGAG
AAATCGCATCATTGAGTGCAAATAGTTTTTAATTTTGTAAAAACTTTTGGTCTTTGAATTAAAAA
CTGATTCACATAAGAATTGTTTCTCTCTTGCTTCTTGGATGAATTACAGAACCTGTCAAACTTTT
ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTAAAGACGATCCATTCCTCCAAGAAATTTT
TCGAACATTCCATGCCCGGGAAATCGCACCATTTGGTCTAAATACTTTGTTATTTTGTAATAAAC
TTTTGGTCTTTGAATTAAAAACTTATTTAAATCAGAATTGTTTCTCCCTCGTTCTCTGACGAACT
TCCGAACTGGTCAAACATTTAAGAGTTCTTATATAACTCTGATTCCTGAAAGTACTCAAGACGAA
CCATTCCTTCAACCAATTTTCCAAACATTCCATTCTAAGGAAATCGCACCATTTGGTCTAAATAG
TTTGTCATTTTGGAATAAACTTTTGGTCTTTAAATTAAAAATTTTCTAAATCAGAATTGTTTCTC
TCTTTGTTCTTGGACGAACTTCCGAACTGGTCAAAATTTTACCACTTCTTTTATATACATTAGTT
CCCTATTTACGTGAGAATTG
Found at i:24695992 original size:215 final size:216
Alignment explanation
Indices: 24694423--24696223 Score: 1915
Period size: 215 Copynumber: 8.3 Consensus size: 216
24694413 CCTATTTACG
* * * * * *
24694423 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCCAACATTTATGACTTCTT
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTTCGAACTTGTCAAACATTTACGAGTTCTT
* * * * * * *
24694488 TTCTAAC-TTGGTTCCTTACAGTATTTCAAGAAC-ATCCATTTCATCAAG-AATTTTTCGAACAT
66 TTATAACTTTGGTTCCTTAAAGTA-CTCAAG-ACGAACCATTCCTTCGAGTAATTTTTCGAACAT
* * ** * *
24694550 TCCATGCTTGGGAAATCGCATTATTTAGTCTAAATAGTTTTTCATTTTGTAAACAA-TGTTTGGT
129 TCCATGCTCGGGAAATCGAACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT-TTTGGT
* * *
24694614 CTTTGAATTAAAAACTTATTTACA
193 CTTTAAATTAAAAAGTTATTTAAA
* * * *
24694638 TAAGAATTTTTTCTCT-TCTGCTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGAGTTCT
1 TGAGAATTGTTTCTCTCT-TGCTTCTTGGCCGAACTTTCGAACTTGTCAAACATTTACGAGTTC-
* ** * * *
24694702 TTTTTTAACTTCAGTTCCTTAAAGTACTCAAGACTATATCCTTTCCTTCGAGAAATTTTTC-AAC
64 TTTTATAACTTTGGTTCCTTAAAGTACTCAAGACGA-A-CCATTCCTTCGAGTAATTTTTCGAAC
* * * * *
24694766 ATTCCATGCCCGGGAAATCGCACCATTTGGTCTAAATACTTTTTCATTTTGTAATCAACTTTTGG
127 ATTCCATGCTCGGGAAATCGAACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
*
24694831 TCTTTGAATTAAAAAGTTATTTAAA
192 TCTTTAAATTAAAAAGTTATTTAAA
* * * * *
24694856 TGAGAATTGTTTCTCCCTCGCTT-TCTGGCTGAACTTTCGAAGTTG-CCAACATTTACGAGTTCT
1 TGAGAATTGTTTCTCTCTTGCTTCT-TGGCCGAACTTTCGAACTTGTCAAACATTTACGAGTTCT
* * * * *
24694919 TATATAACTTTGATTCCTTAAAGTACTCAAGACGAACCATTCCTTCAAGCAATTTTCCGAACATT
65 TTTATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGTAATTTTTCGAACATT
* * * *
24694984 TCATGTTC-GGAAATCGCACCATTTGGTC-AAATAGTTTGTCATTTTGGAAACAACTTTTGGTCT
130 CCATGCTCGGGAAATCGAACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
*
24695047 TTAAATTAAAATGTTATTTAAA
195 TTAAATTAAAAAGTTATTTAAA
* * * *
24695069 TGAGAATTGTTTCTCTTTTGCTTCTTGGCCGAAC-TTCTG-ACTTGTCAAACTTTTACTACTTCT
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTTC-GAACTTGTCAAACATTTACGAGTTCT
* * * * * *
24695132 TTTATATACTTTAGTT-CTTAAAGTACTCAAGACTATATCCTTTCGTTCGAGCAATTTTTCTAAC
65 TTTATA-ACTTTGGTTCCTTAAAGTACTCAAGACGA-A-CCATTCCTTCGAGTAATTTTTCGAAC
** * * * *
24695196 ATTCCATGCTCAAGAAATCGTACCATTTGGTCTAAATAGTTCGTCATTTTGTAAACAAATTTTGC
127 ATTCCATGCTCGGGAAATCGAACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
*
24695261 TCTTTGAATTAAAAAGTTATTTAAAAA
192 TCTTTAAATTAAAAAGTTATTT--AAA
* * * *
24695288 TGAGAATTGTTTCTCCCTTGCTTTTTGGCTGGCTGAA-TTTCTGAACTGGTCAAACATTTATGAG
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGC---C-GAACTTTC-GAACTTGTCAAACATTTACGAG
* * *
24695352 TTCTTATATAACTTTGGCTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGTAA-TTTTCCAA
61 TTCTTTTATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGTAATTTTTCGAA
* * *
24695416 CATTCCATGCTCGGGGAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAACTTTTG
126 CATTCCATGCTCGGGAAATCGAACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
*
24695481 GTCTTTAAATTAAAATGTTATTTAAA
191 GTCTTTAAATTAAAAAGTTATTTAAA
* * * * * *
24695507 TGAGAATTGTTTGTCTTTTTCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGACTTCTT
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTTCGAACTTGTCAAACATTTACGAGTTCTT
* * * * *
24695572 TTATAACTTTAGTTCCTTAAAGTACTCAAGACTATATCCTTTCGTTCGAGTAATTTTTTGAACAT
66 TTATAACTTTGGTTCCTTAAAGTACTCAAGACGA-A-CCATTCCTTCGAGTAATTTTTCGAACAT
* * * *
24695637 TCCATGCTCGGGAAATCGTACCATTTGTTCTAAATAGTTCGTCATTTTGTAAACAACTTTTGCTC
129 TCCATGCTCGGGAAATCGAACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
*
24695702 TTTGAATTAAAAAGTTATTTAAA
194 TTTAAATTAAAAAGTTATTTAAA
* * * * * *
24695725 TAAGAATTGTTTCTC-CTTGCTTTTTGGCTGAA-TTTCTGAACTGGTCAAACATTTATGAGTTAT
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTTC-GAACTTGTCAAACATTTACGAGTTCT
* * *
24695788 TATATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGTAATTTTCCAAACATT
65 TTTATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGTAATTTTTCGAACATT
* * *
24695853 CCATGCTCGGGGAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TTTTGGCCT
130 CCATGCTCGGGAAATCGAACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
* *
24695917 TTAAACTAAAAAGTTTTTTAAA
195 TTAAATTAAAAAGTTATTTAAA
* * * * * *
24695939 TGAGAATTGTTTCTCTCTTCCTTCTTGGCCGAACTTTTGAACCTGTTAAACATTAACGATTTCTT
1 TGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTTCGAACTTGTCAAACATTTACGAGTTCTT
* * * * ** * * ** * * *
24696004 TTATAACTTCGATTCCTGAGAGTGTTCAAGATGATCCATAGCTACGA-CAAATTTTCGAACATTC
66 TTATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGTAATTTTTCGAACATTC
* * *
24696068 CATGCTCGGGATATC-ACATCATTTGGTCTAAATAGTTTTTCATTTTGT-AACAACGTTTT-GTC
131 CATGCTCGGGAAATCGA-ACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTC
* ***
24696130 TTTAAATTAAAAA-TTATATCCG
194 TTTAAATTAAAAAGTTATTTAAA
* * ** *
24696152 TGAGAATAGTTTTCTCTCTGGC-TCTTGGATGAA-TTTCTGAACTTGTTAAACATTTACGAGTTC
1 TGAGAATTG-TTTCTCTCTTGCTTCTTGGCCGAACTTTC-GAACTTGTCAAACATTTACGAGTTC
24696215 TTTTATAAC
64 TTTTATAAC
24696224 ATCGACTCCT
Statistics
Matches: 1332, Mismatches: 214, Indels: 82
0.82 0.13 0.05
Matches are distributed among these distances:
212 10 0.01
213 175 0.13
214 168 0.13
215 298 0.22
216 74 0.06
217 157 0.12
218 228 0.17
219 66 0.05
221 84 0.06
222 14 0.01
223 16 0.01
224 42 0.03
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (216 bp):
TGAGAATTGTTTCTCTCTTGCTTCTTGGCCGAACTTTCGAACTTGTCAAACATTTACGAGTTCTT
TTATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGTAATTTTTCGAACATTC
CATGCTCGGGAAATCGAACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
TAAATTAAAAAGTTATTTAAA
Found at i:24696005 original size:432 final size:433
Alignment explanation
Indices: 24694423--24696223 Score: 2171
Period size: 432 Copynumber: 4.2 Consensus size: 433
24694413 CCTATTTACG
* * * * *
24694423 TGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTTC-AAACTTGTCCAACATTTATGACTTC
1 TGAGAATTGTTTCTC-CTTGCTTTTTGG-CTGAA-TTTCTGAACTTGTCAAACATTTATGAGTTC
* * * * * * * *
24694486 TTTTCTAAC-TTGGTTCCTTACAGTATTTCAAGAAC-ATCCATTTCATCAAG-AATTTTTCGAAC
63 TTATATAACTTTGGTTCCTTAAAGTA-CTCAAG-ACGAACCATTCCTTCAAGTAATTTTCCGAAC
* * * * * *
24694548 ATTCCATGCTTGGGAAATCGCATTATTTAGTCTAAATAGTTTTTCATTTTGTAAACAA-TGTTTG
126 ATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAACT-TTTG
* * * * * *
24694612 GTCTTTGAATTAAAAACTTATTTACATAAGAATT-TTT-TCTCTTCTGCTTCTTGGCTGAACTTT
190 GTCTTTAAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCTCTTC--CTTCTTGGCCGAACTTC
* * *
24694675 CGAACTTGTCAAACTTTTACGAGTTCTTTTTTTAACTTCAGTTCCTTAAAGTACTCAAGACTATA
253 CGAACTTGTCAAACTTTTACGACTTC-TTTTATAACTTTAGTTCCTTAAAGTACTCAAGACTATA
* * *
24694740 TCCTTTCCTTCGAG-AAATTTTTCAACATTCCATGCCCGGGAAATCGCACCATTTGGTCTAAATA
317 TCCTTTCGTTCGAGCAAATTTTTGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATA
* ** * *
24694804 CTTTTTCATTTTGTAATCAACTTTTGGTCTTTGAATTAAAAAGTTATTTAAA
382 GTTCGTCATTTTGTAAACAACTTTTGCTCTTTGAATTAAAAAGTTATTTAAA
* * * * *
24694856 TGAGAATTGTTTCTCCCTCGCTTTCTGGCTGAACTTTC-GAAGTTG-CCAACATTTACGAGTTCT
1 TGAGAATTGTTTCT-CCTTGCTTTTTGGCTGAA-TTTCTGAACTTGTCAAACATTTATGAGTTCT
* *
24694919 TATATAACTTTGATTCCTTAAAGTACTCAAGACGAACCATTCCTTCAAGCAATTTTCCGAACATT
64 TATATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCAAGTAATTTTCCGAACATT
* * * *
24694984 TCATGTTC-GGAAATCGCACCATTTGGTC-AAATAGTTTGTCATTTTGGAAACAACTTTTGGTCT
129 CCATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAACTTTTGGTCT
* * * *
24695047 TTAAATTAAAATGTTATTTAAATGAGAATTGTTTCTCTTTTGCTTCTTGGCCGAACTTCTG-ACT
194 TTAAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCTCTTCCTTCTTGGCCGAACTTCCGAACT
*
24695111 TGTCAAACTTTTACTACTTCTTTTATATACTTTAGTT-CTTAAAGTACTCAAGACTATATCCTTT
259 TGTCAAACTTTTACGACTTCTTTTATA-ACTTTAGTTCCTTAAAGTACTCAAGACTATATCCTTT
* ** *
24695175 CGTTCGAGC-AATTTTTCTAACATTCCATGCTCAAGAAATCGTACCATTTGGTCTAAATAGTTCG
323 CGTTCGAGCAAATTTTT-GAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTCG
*
24695239 TCATTTTGTAAACAAATTTTGCTCTTTGAATTAAAAAGTTATTTAAAAA
387 TCATTTTGTAAACAACTTTTGCTCTTTGAATTAAAAAGTTATTT--AAA
*
24695288 TGAGAATTGTTTCTCCCTTGCTTTTTGGCTGGCTGAATTTCTGAACTGGTCAAACATTTATGAGT
1 TGAGAATTGTTTCT-CCTTGC-TTTT---TGGCTGAATTTCTGAACTTGTCAAACATTTATGAGT
* *
24695353 TCTTATATAACTTTGGCTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGTAATTTTCC-AAC
61 TCTTATATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCAAGTAATTTTCCGAAC
*
24695417 ATTCCATGCTCGGGGAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAACTTTTGG
126 ATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAACTTTTGG
* * * *
24695482 TCTTTAAATTAAAATGTTATTTAAATGAGAATTGTTTGTCTTTTTCTTCTTGGCCGAACTTCCGA
191 TCTTTAAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCTCTTCCTTCTTGGCCGAACTTCCGA
24695547 ACTTGTCAAACTTTTACGACTTCTTTTATAACTTTAGTTCCTTAAAGTACTCAAGACTATATCCT
256 ACTTGTCAAACTTTTACGACTTCTTTTATAACTTTAGTTCCTTAAAGTACTCAAGACTATATCCT
* * * *
24695612 TTCGTTCGAGTAATTTTTTGAACATTCCATGCTCGGGAAATCGTACCATTTGTTCTAAATAGTTC
321 TTCGTTCGAGCAAATTTTTGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTC
24695677 GTCATTTTGTAAACAACTTTTGCTCTTTGAATTAAAAAGTTATTTAAA
386 GTCATTTTGTAAACAACTTTTGCTCTTTGAATTAAAAAGTTATTTAAA
* * *
24695725 TAAGAATTGTTTCTCCTTGCTTTTTGGCTGAATTTCTGAACTGGTCAAACATTTATGAGTTATTA
1 TGAGAATTGTTTCTCCTTGCTTTTTGGCTGAATTTCTGAACTTGTCAAACATTTATGAGTTCTTA
* *
24695790 TATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCGAGTAATTTTCCAAACATTCC
66 TATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCAAGTAATTTTCCGAACATTCC
* * *
24695855 ATGCTCGGGGAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TTTTGGCCTTT
131 ATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAACTTTTGGTCTTT
* * ** *
24695919 AAACTAAAAAGTTTTTTAAATGAGAATTGTTTCTCTCTTCCTTCTTGGCCGAACTTTTGAACCTG
196 AAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCTCTTCCTTCTTGGCCGAACTTCCGAACTTG
* * * * * * * ** * * *
24695984 TTAAACATTAACGATTTCTTTTATAAC-TTCGATTCCTGAGAGTGTTCAAGA-T-GATCC-ATAG
261 TCAAACTTTTACGACTTCTTTTATAACTTTAG-TTCCTTAAAGTACTCAAGACTATATCCTTTCG
* * * * * **
24696045 CTACGA-CAAATTTTCGAACATTCCATGCTCGGGATATCACATCATTTGGTCTAAATAGTTTTTC
325 -TTCGAGCAAATTTTTGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTCGTC
* * ***
24696109 ATTTTGT-AACAACGTTTTG-TCTTTAAATTAAAAA-TTATATCCG
389 ATTTTGTAAACAAC-TTTTGCTCTTTGAATTAAAAAGTTATTTAAA
* * * * * *
24696152 TGAGAATAGTTTTCTCTCTGGC-TCTTGGATGAATTTCTGAACTTGTTAAACATTTACGAGTTCT
1 TGAGAATTG-TTTCTC-CTTGCTTTTTGGCTGAATTTCTGAACTTGTCAAACATTTATGAGTTCT
*
24696216 TTTATAAC
64 TATATAAC
24696224 ATCGACTCCT
Statistics
Matches: 1209, Mismatches: 129, Indels: 65
0.86 0.09 0.05
Matches are distributed among these distances:
427 12 0.01
428 69 0.06
429 113 0.09
430 117 0.10
431 78 0.06
432 283 0.23
433 136 0.11
434 1 0.00
435 8 0.01
436 31 0.03
437 103 0.09
438 102 0.08
439 150 0.12
440 6 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (433 bp):
TGAGAATTGTTTCTCCTTGCTTTTTGGCTGAATTTCTGAACTTGTCAAACATTTATGAGTTCTTA
TATAACTTTGGTTCCTTAAAGTACTCAAGACGAACCATTCCTTCAAGTAATTTTCCGAACATTCC
ATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAACTTTTGGTCTTT
AAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCTCTTCCTTCTTGGCCGAACTTCCGAACTTG
TCAAACTTTTACGACTTCTTTTATAACTTTAGTTCCTTAAAGTACTCAAGACTATATCCTTTCGT
TCGAGCAAATTTTTGAACATTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTCGTCAT
TTTGTAAACAACTTTTGCTCTTTGAATTAAAAAGTTATTTAAA
Found at i:24697267 original size:431 final size:432
Alignment explanation
Indices: 24696233--24700791 Score: 2564
Period size: 431 Copynumber: 10.4 Consensus size: 432
24696223 CATCGACTCC
* * *
24696233 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAAATTGTCAAACATTTA
1 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTA
* * * * * * **
24696298 TGAGTTCTTTTCTAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCATCTATAAATTTTT
66 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT
* * * * * * *
24696363 CGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTTATCTTATAAACAACG
131 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * ** * *
24696428 TTTGGTCTTTGTATTAAAAACTCATTTACATGAGAATTGTTTCTTTCTTACTTCTTGG-TCGAAG
196 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGCT-GAAC
* * * * * *
24696492 TTTCAAACTTGTCAAACTTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAACTA-
260 TTCCAAACTTGTCAAAC-ATTTACGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTCAA-GAC
* * * * * *
24696556 TATCCTTTCCTTTCGAGCAA--TTTT--CCATTCCATGCTC-GGAAA-CGCACCATTTAGTGTAA
323 GATCCATTCCTTT-GAGCAATTTTTTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
*
24696615 ATAGTTTGTCATTTTGT-AACAACTTTTGGTCTTTGAATTAAAAAG
387 ATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAG
* * * * * * ** * *
24696660 TTATATA-ATGAGAATTGTTTCTCCCTTGCTTTTTGGCTTAACTTTAGAATTTATCAAA-TTTTA
1 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTA
* * * * **
24696723 CGAGTTCTTATATAACTATCTTTGGTTTCTTAAAGTACTCAAGACGAACCATTCCTTTGAGCAAT
66 CGAGTTCTTTTATAACT-TC---GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAAT
* * * * *
24696788 TTTTTGAACATTCCATGCTCGGGAAAGCGTACCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
127 TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* ** * * *
24696853 AACTTTTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCCCTTGCTTTTTGGCTT
192 AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGCTG
* * * * * * *
24696918 AACTTCAAAACTTATCAAATATTTACGAGTTCTTATATAACTTTGGTTTCTTAAAGTACTCAAGA
257 AACTTCCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTCAAGA
* * * *
24696983 CGAACCATTCCTTTGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGTACCATTTGGTCTAA
322 CGATCCATTCCTTTGAGCAATTTTTTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * *
24697048 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAATG
387 ATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAG
* * * **
24697094 TTATTTAAATGAGAATTATTTCTCTCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTA
1 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTA
* * *
24697159 CGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGAACC-TTCCTTCAAGCAATTTTT
66 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT
* * * * * *
24697223 TGAACATTCCAAGCTCGAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTATAAAGAACT
131 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
24697288 TTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTAGAC-GAAC
196 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTTGGCTGAAC
* * * * *
24697352 TTCCAAGCATGTCAAACAATTAAGAGTTCTTTTATAACTAT-GGTTACTTAAAGTATTCAAGATG
260 TTCCAAACTTGTCAAACATTTACGAGTTCTTTTATAACT-TCGGTTACTTAAAGTATTCAAGACG
* * ** * *
24697416 ATCCATTCCTTGGAACAATTTTACAAACATTTCATGCTCTGGAAATCGCATCATTTGGTCTAAAT
324 ATCCATTCCTTTGAGCAATTTTTTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * * * * *
24697481 AGTTTTTTATTTTGTAAAAAACTTTTTGCCTTTAAAGT-AAAAC
389 AGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAG
* * * * * * *
24697524 TTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTTGATGAACATCCGAACTTG-CTGAACATTA
1 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC-AAACTTTT
* * * * * *
24697588 ACGAGTTCTTTTATAACTTCGATT-CTTGAGAGTGTTGAAGATGATCCATTCCTACAA-CTAATT
65 ACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCAAGC-AATT
* * * * * * *
24697651 TTCCAAACATTCCAAGCTCAAGAAATCACATCAATTGGTCTAAATCA-TTTGTAATTTTGTAAAC
128 TTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT-AGTTTGTCATTTTGTAAAC
* * * * * * *
24697715 AACTTTTTGTCTTTAAATTAAAAATTTATTTTCGTGAGAATAGTTTCTCTCTTGGTTCTTGGATG
192 AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGCTG
*** *
24697780 AACTTTTGAACTTGTTAAACATTTACGAGTTCTTTTATAACTTCGGTTAC-TAAGAGTATTCAAG
257 AACTTCCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTACTTAA-AGTATTCAAG
* * *
24697844 ATGATCCATT-CTTTCGA-CAAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCA-TTGAGT
321 ACGATCCATTCCTTT-GAGC-AATTTTTTAAACATTCCATGCTCGGGAAATCGCATCATTTG-GT
* * *
24697906 CTAAATAGTTTTTAATTTTGTAAAAAACTTTTAGTCTTTGAATTAAAAAG
383 CTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAG
* * * * * * * ** *
24697956 TGATTCACTTTATAATTGTTTCTCTCTAGGTTCTTGGATGAATTTCAAAACTTGTCAAACTTTTT
1 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTA
* * * * * * *
24698021 CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTAAAGGCGATCGATTTCTCCGAGCAATTTTT
66 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT
* * * * * * *
24698086 CGAACACTCTATGCTCG-GGAATTGCATCATTTGGTTTTTAATAGTTTGCCATTTTGTAAA-AAG
131 CGAACATTCCATGCTCGAGAAATCGCATCATTTGG-TCTAAATAGTTTGTCATTTTGTAAACAA-
* * * * *
24698149 CTTTTGATCTTTGAATTAAAAACTTATTTATGTGAGAATGGTTTCTCACTTGGTTTTTGAAC-GA
194 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTG-GCTGA
* * ** * ** * * * *
24698213 ACTTCCAAACTTTTCAAACATTTAAGAGTTCTTCCATAACGTCAATTCCTGAGAGTATTCAAGAG
258 ACTTCCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTCAAGAC
** * * * * * *
24698278 GATCCATTCCTTCAACCAA-TTTTCAAACATTCCATTCTCGAGAAATTGCATCATTTGGTATAAA
323 GATCCATTCCTTTGAGCAATTTTTTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * *
24698342 TAGTTTGTCATTTTGTAATAACCTTTTGGTCTTTGAATTAAAAAC
388 TAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAG
* * *
24698387 TTATTTACGTCAGAATTGTTTCTCTCTT-GTTCTTGGATGAAACTTCCGAA-TTGGTCAAAATTT
1 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATG-AACTTCCGAACTT-GTCAAACTTT
* * * * **** * ** *
24698450 TACGAGTTCTTTTATAACTTCTGTTCCCTATTTACGTGA--GAATTGTTTTTGTC-TTGGTTCTT
64 TACGAGTTCTTTTATAACTTCGGTT-CC--TTAAAGT-ATTCAA--GACGAT-CCATTCCTTC-A
* * ** ** ** ***
24698512 AGACGAA-CTTTCGAAC-TTGTCAAACATTTATGAGTTCTTTTCTATCCTTGGATCCTTAAAGTA
121 AG-C-AATTTTTCGAACATT-CCATGC-TCGA-GAAATCGCATC-AT--TTGG-T-C-TAAA-TA
* ** * * ** * ** ** *
24698575 -TTCAAGATGATCCATTTCGTCGAGAAATTTTCGAACATTCCATGCTCGGGAAATCGCATCATTT
174 GTT-----TG-T-CATTTTGTAAACAACTTTT-GGTCTTTGAAT--T----AAA-AAC-TTATTT
* * * * * * * ** * **
24698639 -GGTCTAAACATTTTTTTTATCTT-GTAAACAACGTTTGGTCTTTGAA-TTAAAAACTTAT-TTA
223 ACGT-GAGA-ATTGTTTCTCTCTTGGT-------TTTTGG-C--TGAACTTCCAAACTTGTCAAA
** * ** * *** **
24698700 CA--T--GAGAACTGTTTCTCTCTT-GCTT-CTTGGCCGTACTTCCAA-ACTTG-T-CA-AACTT
276 CATTTACGAGTTCT-TTTATAACTTCGGTTACTT-AAAGTA-TT-CAAGAC--GATCCATTCCTT
* * * *** * ** *
24698755 TTATG-AGTTCTTTTATAAC-TTCCATTC-CTTAAAGTACTCAAGACTATATCCTTTCCTTCGAG
335 TGA-GCAATT-TTTTA-AACATTCCATGCTCGGGAA--A-TC--G-C---ATCATTT-GGTCTA-
* ** * * * * * ****
24698817 CAAT-TTTCTGAACGTTCCATGCTCGGGAAATCGCACCATTTGGTC--T-AAATAGTTTG
386 -AATAGTT-T----G-T-CAT--TTTGTAAA---AAACTTTTGGTCTTTGAATTAAAAAG
* ** ** * * * * * ** * * *
24698873 TCATTTTGAAAACAACTT-TTGGTCTTTGAATTAAAAAGTTATTTAAATGAGAATT----ATTTC
1 TTATTTACATGAGAA-TTGTT--TCTCT--CTT----GGTT-CTTGGATGA-ACTTCCGAACTTG
*** * * * * * *
24698933 TCCCTTGCTTTTGGCTGAACTTCTGAACTTGTA-AACATTTATGAGTTCTTATATAACTTTGGTT
55 T--CAAACTTTT-AC-G-AGTTCT----TT-TATAAC--TT-CG-GTTCCT-TA-AA--GT-ATT
** ** ** *
24698997 CCTTAA-A-GTACTTAAGACGAACCATTCCTTCGAA-CAATTTACCGAGCATTCCATGCTCGAGA
101 -C--AAGACG-A-TCCATTC---C------TTC-AAGCAATTTTTCGAACATTCCATGCTCGAGA
** *
24699059 AATAACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAA
151 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* ** * * * * * *
24699124 GTTATTTAAATGAGAATTGTTTCTCTCTTGCTTATTGGCCGAATTTCCGAACTTGTCAAACTTTT
216 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGCTGAACTTCCAAACTTGTCAAACATTT
* * * * * * * ** * *
24699189 ATGAGTACTTTTATGACTTCGATTCCTTAAAGTACTCAAGACTATTGATTCCTTCGAGTAATTTT
281 ACGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTT
* * * * * *
24699254 TTGAACATTCCATGTTCGGGAAATCGTACCATTTGCTCTAAATAGTTTGTCATTTTGTAAACAAC
346 TTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAC
* * *
24699319 TTTTTGTCTTTAAATTAAAAAC
411 TTTTGGTCTTTGAATTAAAAAG
* * * * *
24699341 TAATTTACGTGAGAATTTTTTTGTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTT
1 TTATTTACATGAGAA-TTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
* * * *
24699406 AAGAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACAATCCATTCCTTCGAGCAATTTT
65 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT
*
24699471 TCGAACATTCCATGCTC-AGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAGACAA
130 TCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * *
24699535 CCTTTT-GTCTTTAAAGTAAAAACTTATTTACGTGAGTATT-TTTCACTCTTGGTTCTTGGAC-G
194 -CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGG-CTG
* * * * * *
24699597 AACATT-CAAACCTGTCAAACATTAACGAGTTCTTTTATAACTTCGATT-CTTGAGACTGTTCAA
257 AAC-TTCCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTACTT-AAAGTATTCAA
** ** * ** *** *
24699660 GGTGATCCATTCCTACGACCAATTTTTCGAACATTCCATGCTCAATAAATCACATCA-TTGGT-T
320 GACGATCCATTCCTTTGAGCAATTTTTTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT
*
24699723 AAAATAGTTT-TCAATTTTGT-AAAAA-TTTTGGTCTTTGAATTAAAAAT
385 -AAATAGTTTGTC-ATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAG
* * * *
24699770 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGATGAATTTTCGAACTTGTCAAACTTTTA
1 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTA
* * ** * * *
24699835 CAAGTTC-TTTATAACTTCGGTTCCTTAAAGTATTAAAGACGATTTAGTCCTTCGAGTAATTTTT
66 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT
* * * * *
24699899 CGAACATTCCACGCTCGGGAAATCGCATTATTTGGTCGAAATAGTTTGT-ATTTTGTAAAAAACT
131 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * *
24699963 TTTGGTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC-GAAC
196 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTG-GCTGAAC
** * * * *
24700027 TTCTGAACATT-TCAAACATTTTA-GAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTCAAGAC
260 TTCCAAAC-TTGTCAAACA-TTTACGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTCAAGAC
* * *** * * * *
24700090 GATCCATTCCGTTGACCAA-TTTCCCAACATTCCATGCTCGGGAATTTGTATAATTTGGTCTAAA
323 GATCCATTCCTTTGAGCAATTTTTTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * *
24700154 TATTTTGTCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAAT
388 TAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAG
* * * * ** *
24700199 TTATTT--ATGTGAGTTGTTTCTCTCTTAGTTTTTGGACAAACTTCCAAACTTGTCAAA-TATTT
1 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACT-TTT
* * *
24700261 AAGAGTTTTTTTATAACTTCGGTTCC-TAAGAGTATTCAAGACGATCCATTCCTTCGA-CAAATT
65 ACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCAAGC-AATT
* * * ** * *
24700324 TTCCAAACATTTCATGCTC-AGGAAATTTCATCATTTGGTCTAAATAGTTTGTCATTTGGTAATC
128 TTTCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * * **
24700388 AATTTTTGCTCTTTGAATTAAAAACTTATTTCCGTCAAAATTGTTTCTAACTT--TTTCTTGGAC
192 AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTT-TTGG-C
* * * * *
24700451 -GAACTTTCGAACTTGTCAAA-ATTGTACGAGTTCTTTTATAACATCAG-TACCTTAAAGTCTTC
255 TGAACTTCCAAACTTGTCAAACATT-TACGAGTTCTTTTATAACTTCGGTTA-CTTAAAGTATTC
* * *** * * * *
24700513 ACA-ACGATCAATTCCTTCGAGCACA-TTTCCGAACATTCCATACTCCGAAAATCACATCATTTG
318 A-AGACGATCCATTCCTTTGAGCA-ATTTTTTAAACATTCCATGCTCGGGAAATCGCATCATTTG
* * *
24700576 GTGTAAATAGTTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
381 GTCTAAATAG-TTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAG
* * * * *
24700629 TTATTTACGTGAGAATTGTTTGTCTATTGGTTCCTGGATGAACTTCCGAACTTGTCAAACATTTA
1 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTA
* * * * * * *
24700694 AGAGTTCTTTT-TATCTTCAGTTCC-TAAGAGCATTCAAGACGATCCATTCCTTCGACCAACTTT
66 CGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCAAGCAATTTT
* *
24700757 ACGAACATTCCATGCTC-AGGAAATCGCACCATTTG
130 TCGAACATTCCATGCTCGA-GAAATCGCATCATTTG
24700792 TTTTTCACAT
Statistics
Matches: 3155, Mismatches: 731, Indels: 488
0.72 0.17 0.11
Matches are distributed among these distances:
425 23 0.01
426 115 0.04
427 264 0.08
428 260 0.08
429 315 0.10
430 171 0.05
431 772 0.24
432 440 0.14
433 141 0.04
434 42 0.01
435 51 0.02
436 24 0.01
437 11 0.00
438 3 0.00
439 1 0.00
440 4 0.00
441 2 0.00
442 5 0.00
443 7 0.00
444 1 0.00
445 7 0.00
446 3 0.00
448 1 0.00
449 2 0.00
450 7 0.00
451 1 0.00
452 14 0.00
453 11 0.00
454 5 0.00
455 1 0.00
458 5 0.00
459 7 0.00
460 9 0.00
461 17 0.01
462 9 0.00
463 4 0.00
464 2 0.00
465 26 0.01
466 13 0.00
467 21 0.01
468 29 0.01
469 6 0.00
470 12 0.00
471 5 0.00
472 2 0.00
475 6 0.00
476 6 0.00
477 4 0.00
478 7 0.00
479 5 0.00
482 4 0.00
483 10 0.00
484 6 0.00
485 6 0.00
486 27 0.01
487 25 0.01
488 26 0.01
489 13 0.00
490 2 0.00
491 11 0.00
492 10 0.00
493 3 0.00
494 8 0.00
495 5 0.00
496 9 0.00
497 5 0.00
498 1 0.00
500 6 0.00
501 19 0.01
502 4 0.00
503 5 0.00
504 2 0.00
505 3 0.00
506 2 0.00
507 2 0.00
508 7 0.00
509 2 0.00
510 1 0.00
511 6 0.00
513 2 0.00
514 5 0.00
515 4 0.00
516 9 0.00
517 2 0.00
518 4 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (432 bp):
TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTA
CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT
CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGCTGAACT
TCCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTCAAGACGAT
CCATTCCTTTGAGCAATTTTTTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAG
Found at i:24697304 original size:215 final size:216
Alignment explanation
Indices: 24696232--24700791 Score: 2284
Period size: 216 Copynumber: 20.8 Consensus size: 216
24696222 ACATCGACTC
* * *
24696232 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAAATTGTCAAACATTT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
* * * * * * **
24696297 ATGAGTTCTTTTCTAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCATCTATAAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * *
24696362 TCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTTATCTTATAAACAAC
131 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* *
24696427 GTTTGGTCTTTGTATTAAAAA
196 TTTTGGTCTTTGAATTAAAAA
* * ** * * *
24696448 CTCATTTACATGAGAATTGTTTCTTTCTTACTTCTTGG-TCGAAGTTTCAAACTTGTCAAACTTT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAT-GAACTTCCGAACTTGTCAAAC-TT
* * * * *
24696512 TTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAACTA-TATCCTTTCCTTTCGAGCAA
64 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCC-TTCGAGCAA
* * *
24696576 -TTTTC---CATTCCATGCTCG-GAAA-CGCACCATTTAGTGTAAATAGTTTGTCATTTTGT-AA
127 TTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
24696634 CAACTTTTGGTCTTTGAATTAAAAA
192 CAACTTTTGGTCTTTGAATTAAAAA
* * * * * * * ** * *
24696659 GTTATATA-ATGAGAATTGTTTCTCCCTTGCTTTTTGGCTTAACTTTAGAATTTATCAAA-TTTT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
* * * * *
24696722 ACGAGTTCTTATATAACTATCTTTGGTTTCTTAAAGTACTCAAGACGAACCATTCCTTTGAGCAA
66 ACGAGTTCTTTTATAACT-TC---GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * *
24696787 TTTTTTGAACATTCCATGCTCGGGAAAGCGTACCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
127 TTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
24696852 CAACTTTTGGTCTTTGAATTAAAAA
192 CAACTTTTGGTCTTTGAATTAAAAA
* * * * * * * ** *
24696877 GTTATTTAAATGAGAATTGTTTCTCCCTTGCTTTTTGGCTTAACTTCAAAACTTATCAAA-TATT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACT-TT
* * * * * *
24696941 TACGAGTTCTTATATAACTTTGGTTTCTTAAAGTACTCAAGACGAACCATTCCTTTGAGCAATTT
65 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * *
24697006 TTTGAACATTCCATGCTCGGGAAATCGTACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
130 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* *
24697071 CTTTTGGTCTTTAAATTAAAAT
195 CTTTTGGTCTTTGAATTAAAAA
* * * * **
24697093 GTTATTTAAATGAGAATTATTTCTCTCTTGCTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
* * * *
24697158 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACGAACC-TTCCTTCAAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * *
24697222 TTGAACATTCCAAGCTCGAGAAATCGCACCATTTGCTCTAAATAGTTTGTCATTTTATAAAGAAC
131 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* *
24697287 TTTTTGTCTTTAAATTAAAAA
196 TTTTGGTCTTTGAATTAAAAA
* * * * * **
24697308 CTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTAGACGAACTTCC-AAGCATGTCAAACAAT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAA-CTTGTCAAACTTT
* * * * *
24697372 TAAGAGTTCTTTTATAACTAT-GGTTACTTAAAGTATTCAAGATGATCCATTCCTTGGAACAATT
65 TACGAGTTCTTTTATAACT-TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * *
24697436 TTACAAACATTTCATGCTCTG-GAAATCGCATCATTTGGTCTAAATAGTTTTTTATTTTGTAAAA
129 TTTCGAACATTCCATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * *
24697500 AACTTTTTGCCTTTAAAGT-AAAA
193 AACTTTTGGTCTTTGAATTAAAAA
* * * * * *
24697523 CTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTTGATGAACATCCGAACTTG-CTGAACATT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC-AAACTTT
* * * * * * * *
24697587 AACGAGTTCTTTTATAACTTCGATT-CTTGAGAGTGTTGAAGATGATCCATTCCTAC-AACTAAT
65 TACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGC-AAT
* * * * * * *
24697650 TTTCCAAACATTCCAAGCTCAAGAAATCACATCAATTGGTCTAAATCA-TTTGTAATTTTGTAAA
128 TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT-AGTTTGTCATTTTGTAAA
* *
24697714 CAACTTTTTGTCTTTAAATTAAAAA
192 CAACTTTTGGTCTTTGAATTAAAAA
* * * * ** * *
24697739 TTTATTTTCGTGAGAATAGTTTCTCTCTTGGTTCTTGGATGAACTTTTGAACTTGTTAAACATTT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
* * *
24697804 ACGAGTTCTTTTATAACTTCGGTTAC-TAAGAGTATTCAAGATGATCCATTCTTTCGA-CAAATT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGC-AATT
* * * *
24697867 TTTTGAACATTCCATGCTCGAGAAATCGCATCA-TTGAGTCTAAATAGTTTTTAATTTTGTAAAA
129 TTTCGAACATTCCATGCTCGAGAAATCGCATCATTTG-GTCTAAATAGTTTGTCATTTTGTAAAC
*
24697931 AACTTTTAGTCTTTGAATTAAAAA
193 AACTTTTGGTCTTTGAATTAAAAA
* * * * * * * * **
24697955 GTGATTCACTTTATAATTGTTTCTCTCTAGGTTCTTGGATGAATTTCAAAACTTGTCAAACTTTT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
* * * * * * *
24698020 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTAAAGGCGATCGATTTCTCCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * *
24698085 TCGAACACTCTATGCTCG-GGAATTGCATCATTTGGTTTTTAATAGTTTGCCATTTTGTAAA-AA
131 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGG-TCTAAATAGTTTGTCATTTTGTAAACAA
*
24698148 GCTTTTGATCTTTGAATTAAAAA
195 -CTTTTGGTCTTTGAATTAAAAA
** * * * * * * * *
24698171 CTTATTTATGTGAGAATGGTTTCTCACTTGGTTTTTGAACGAACTTCCAAACTTTTCAAACATTT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
* ** * ** * * * * *
24698236 AAGAGTTCTTCCATAACGTCAATTCCTGAGAGTATTCAAGAGGATCCATTCCTTCAACCAA-TTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * *
24698300 TCAAACATTCCATTCTCGAGAAATTGCATCATTTGGTATAAATAGTTTGTCATTTTGTAATA-AC
131 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAA
24698364 CTTTTGGTCTTTGAATTAAAAA
195 CTTTTGGTCTTTGAATTAAAAA
* * *
24698386 CTTATTTACGTCAGAATTGTTTCTCTCTT-GTTCTTGGATGAAACTTCCGAA-TTGGTCAAAATT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATG-AACTTCCGAACTT-GTCAAACTT
* * * * **** * **
24698449 TTACGAGTTCTTTTATAACTTCTGTTCCCTATTTACGTGA--GAATTGTTTTTGTC-TTGGTTCT
64 TTACGAGTTCTTTTATAACTTCGGTT-CC--TTAAAGT-ATTCAA--GACGAT-CCATTCCTTC-
* * * ** ** ** ***
24698511 TAGACGAA-CTTTCGAAC-TTGTCAAACATTTATGAGTTCTTTTCTATCCTTGGATCCTTAAAGT
121 GAG-C-AATTTTTCGAACATT-CCATGC-TCGA-GAAATCGCATC-AT--TTGG-T-C-TAAA-T
* ** * * ** * ** **
24698574 A-TTCAAGATGATCCATTTCGTCGAGAAATTTTCGAACATTCCATGCTCGGGAAATCG
174 AGTT-----TG-T-CATTTTGTAAACAACTTTT-GGTCTTTGAAT--T----AAA-AA
* * * * * * * ** ** ** * **
24698631 CATCATTTGGTC-T-AAACATTTTTTTTATCTT-GTAAACAACGTTTGGTCTT-TGAA-TT-AAA
1 C-TTATTT--ACATGAGA-ATTGTTTCTCTCTTGGT--TC-TTGGATGAACTTCCGAACTTGTCA
** * ** * *** *
24698690 AACTTATTTACATGAGAACTGTTTCTCTCTT-GCTT-CTTGGCCGTACTTCCAA-ACTTG-TCAA
59 AAC-T-TTTAC--GAGTTCT-TTTATAACTTCGGTTCCTT-AAAGTA-TT-CAAGAC--GATC-C
* * ** * ** * * * *
24698751 ACTT--TTATGAG--TTCTTTTATAAC-TTCCATTCCTTAAAGTACTCAAGACTATATCCTTTCC
113 A-TTCCTT-CGAGCAAT-TTTTCGAACATTCCA-TGC-TCGAGAAATC--G-C---ATCATTT-G
* * * * * * **** * * ** * *
24698811 TTCGAGCAAT-TTTCTGAACGTTCCATGCTCGGGAA--ATCGCACCATTTG-GTCTAAATA
166 GTCTA--AATAGTT-TG-TCATT--TTG-TAAACAACTTTTG-GTC-TTTGAAT-TAAAAA
* * ** ***** *** * * *
24698868 GTT-TGT-CATTTTGAA-AACAACT-T-TTGG-TCTT---TGAA-TTAAAAAGTTATTTAAATGA
1 CTTATTTACA-TGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAA-CT-TGT-CA--A
* * *** * * ** * * * * * *
24698923 GAATTATTTCTCCCTTGCTTTTGGCTGAACTTCTGAACTTGTAAA-CATTTATGA-GTTCTTATA
60 -ACTT-TTAC-GAGTT-CTTTT--AT-AACTTCGGTTCCT-TAAAGTATTCAAGACGATC-CAT-
* * ** *
24698986 TAACTTTG-GTTCCTTAAAGTACTTAAGACGAACCATTCC-T--TCGA-ACAATTTAC-CGAGCA
115 T-CCTTCGAG---C---AA-T--TT--TTCGAA-CATTCCATGCTCGAGA-AA--T-CGC-ATCA
* * *** * * *
24699045 TTCCATGCTCGAGAA-A-TAACATCATTTGGTCTAAA-TA-GTTT-GTCATTT---TGTAAACAA
162 TT---TGGTCTA-AATAGT-TTGTCATTT--TGTAAACAACTTTTGGTC-TTTGAAT-TAAA-AA
* * * * * * * * ** * ** *
24699102 CTTTTGGTCTTTAAATTAAAAAGTTATTTAAATGAGAATTGTTTCTCTCTTGCTTATTGGCCGAA
1 C---T--TATTTACA-TGAGAA-TTGTTT--CT-----CTCTTGGT-TCTTG--GA-TGAAC-T-
* * * * * *
24699167 TTTCCGAACTTGTCAAACTTTTATGAGTACTTTTATGACTTCGATTCCTTAAAGTACTCAAGACT
46 --TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
** * * * * * * *
24699232 ATTGATTCCTTCGAGTAATTTTTTGAACATTCCATGTTCGGGAAATCGTACCATTTGCTCTAAAT
109 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
* *
24699297 AGTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAA
174 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * * *
24699340 CTAATTTACGTGAGAATTTTTTTGTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATT
1 CTTATTTACATGAGAA-TTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTT
* * *
24699405 TAAGAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACAATCCATTCCTTCGAGCAATTT
65 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
*
24699470 TTCGAACATTCCATGCTC-AGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAGACA
130 TTCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* *
24699534 ACCTTTT-GTCTTTAAAGTAAAAA
194 A-CTTTTGGTCTTTGAATTAAAAA
* * * * * * *
24699557 CTTATTTACGTGAGTATT-TTTCACTCTTGGTTCTTGGACGAACATT-CAAACCTGTCAAACATT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC-TTCCGAACTTGTCAAACTTT
* * * * * ** * *
24699620 AACGAGTTCTTTTATAACTTCGATT-CTTGAGACTGTTCAAGGTGATCCATTCCTACGACCAATT
65 TACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * *
24699684 TTTCGAACATTCCATGCTCAATAAATCACATCA-TTGGT-TAAAATAGTTT-TCAATTTTGTAAA
129 TTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCT-AAATAGTTTGTC-ATTTTGTAAA
24699746 -AA-TTTTGGTCTTTGAATTAAAAA
192 CAACTTTTGGTCTTTGAATTAAAAA
* * * * *
24699769 TTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGATGAATTTTCGAACTTGTCAAACTTTT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
* * ** * *
24699834 ACAAGTTC-TTTATAACTTCGGTTCCTTAAAGTATTAAAGACGATTTAGTCCTTCGAGTAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * *
24699898 TCGAACATTCCACGCTCGGGAAATCGCATTATTTGGTCGAAATAGTTTGT-ATTTTGTAAAAAAC
131 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
*
24699962 TTTTGGTCTTTAAATTAAAAA
196 TTTTGGTCTTTGAATTAAAAA
** * * *
24699983 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCTGAACATT-TCAAACATT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAAC-TTGTCAAAC-TT
* * * *
24700047 TTA-GAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTCAAGACGATCCATTCCGTT-GACCAA-
64 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAAT
* * * * * * * *
24700109 TTTCCCAACATTCCATGCTCGGGAATTTGTATAATTTGGTCTAAATATTTTGTCATTTTGTAAAC
128 TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
*
24700174 AACTTTTGGTCTATGAATTAAAAA
193 AACTTTTGGTCTTTGAATTAAAAA
* * * * * ** *
24700198 TTTATTT--ATGTGAGTTGTTTCTCTCTTAGTTTTTGGACAAACTTCCAAACTTGTCAAA-TATT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACT-TT
* *
24700260 TAAGAGTTTTTTTATAACTTCGGTTCC-TAAGAGTATTCAAGACGATCCATTCCTTCGA-CAAAT
65 TACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGC-AAT
* * * ** * *
24700323 TTTCCAAACATTTCATGCTC-AGGAAATTTCATCATTTGGTCTAAATAGTTTGTCATTTGGTAAT
128 TTTTCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
24700387 CAATTTTTGCTCTTTGAATTAAAAA
192 CAACTTTTGGTCTTTGAATTAAAAA
* * * * ** * * * * *
24700412 CTTATTTCCGTCAAAATTGTTTCTAACTT-TTTCTTGGACGAACTTTCGAACTTGTCAAAATTGT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
* * * * *
24700476 ACGAGTTCTTTTATAACATCAGTACCTTAAAGTCTTCACA-ACGATCAATTCCTTCGAGCACA-T
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGCA-ATT
* * * *
24700539 TTCCGAACATTCCATACTCCGA-AAATCACATCATTTGGTGTAAATAGTTTTGTCATTTTGTAAA
129 TTTCGAACATTCCATGCT-CGAGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAA
24700603 CAACTTTTGGTCTTTGAATTAAAAA
192 CAACTTTTGGTCTTTGAATTAAAAA
* * * * *
24700628 CTTATTTACGTGAGAATTGTTTGTCTATTGGTTCCTGGATGAACTTCCGAACTTGTCAAACATTT
1 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
* * * * * *
24700693 AAGAGTTCTTTT-TATCTTCAGTTCC-TAAGAGCATTCAAGACGATCCATTCCTTCGACCAACTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* *
24700756 TACGAACATTCCATGCTC-AGGAAATCGCACCATTTG
130 TTCGAACATTCCATGCTCGA-GAAATCGCATCATTTG
24700792 TTTTTCACAT
Statistics
Matches: 3356, Mismatches: 718, Indels: 540
0.73 0.16 0.12
Matches are distributed among these distances:
208 21 0.01
209 2 0.00
210 39 0.01
211 45 0.01
212 169 0.05
213 158 0.05
214 261 0.08
215 821 0.24
216 964 0.29
217 289 0.09
218 48 0.01
219 58 0.02
220 23 0.01
221 6 0.00
222 13 0.00
223 2 0.00
224 12 0.00
225 10 0.00
227 5 0.00
228 2 0.00
229 1 0.00
230 9 0.00
231 11 0.00
232 23 0.01
233 15 0.00
234 11 0.00
235 19 0.01
236 8 0.00
237 35 0.01
238 20 0.01
239 10 0.00
240 18 0.01
241 15 0.00
242 11 0.00
243 18 0.01
244 8 0.00
245 18 0.01
246 28 0.01
247 26 0.01
248 22 0.01
249 4 0.00
250 15 0.00
251 14 0.00
252 8 0.00
253 14 0.00
254 6 0.00
256 5 0.00
257 1 0.00
258 2 0.00
259 3 0.00
260 3 0.00
262 1 0.00
263 2 0.00
264 1 0.00
265 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
TTTTGGTCTTTGAATTAAAAA
Found at i:24698497 original size:90 final size:90
Alignment explanation
Indices: 24698388--24698552 Score: 219
Period size: 90 Copynumber: 1.8 Consensus size: 90
24698378 ATTAAAAACT
* *
24698388 TATTTACGTCAGAATTGTTTCTCTCTT-GTTCTTGGATGAAACTTCCGAA-TTGGTCAAA-ATTT
1 TATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTAGACG-AACTTCCGAACTT-GTCAAACA-TT
24698450 TACGAGTTCTTTTATAACTTCTGTTCCC
63 TACGAGTTCTTTTATAACTTCTGTTCCC
* * * * *
24698478 TATTTACGTGAGAATTGTTTTTGTCTTGGTTCTTAGACGAACTTTCGAACTTGTCAAACATTTAT
1 TATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCGAACTTGTCAAACATTTAC
24698543 GAGTTCTTTT
66 GAGTTCTTTT
24698553 CTATCCTTGG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
90 53 0.82
91 12 0.18
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.45
Consensus pattern (90 bp):
TATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCGAACTTGTCAAACATTTAC
GAGTTCTTTTATAACTTCTGTTCCC
Found at i:24699308 original size:216 final size:216
Alignment explanation
Indices: 24698478--24700791 Score: 2473
Period size: 216 Copynumber: 10.8 Consensus size: 216
24698468 TTCTGTTCCC
* * * * *
24698478 TATTTACGTGAGAATTGTTTTTGTCTTGGTTCTTAGACGAACTTTCGAACTTGTCAAACATTTAT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAT
* * * * * * *
24698543 GAGTTCTTTTCTATCCTTGGA-TCCTTAAAGTATTCAAGATGATCCATTTCGTCGAGAAATTTT-
66 GAGTTCTTTTATA-ACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* * * * *
24698606 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAACATTTTTTTTATCTTGTAAACAAC
130 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAC
*
24698671 GTTTGGTCTTTGAATTAAAAACT
194 TTTTGGTCTTTGAATTAAAAACT
* * * * * *
24698694 TATTTACATGAGAACTGTTTCTCTCTTGCTTCTTGGCCGTACTTCCAAACTTGTCAAACTTTTAT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAT
* * * *
24698759 GAGTTCTTTTATAACTTCCATTCCTTAAAGTACTCAAGACTATATCCTTTCCTTCGAGCAATTTT
66 GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC--GATCCATTCCTTCGAGCAATTTT
* * * *
24698824 CTGAACGTTCCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAC
129 CCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
*
24698889 TTTTGGTCTTTGAATTAAAAAGT
194 TTTTGGTCTTTGAATTAAAAACT
** * * * * *
24698912 TATTTAAATGAGAATTATTTCTCCCTTGCTT-TTGG-CTGAACTTCTGAACTTGT-AAACATTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTA
* * * * * *
24698974 TGAGTTCTTATATAACTTTGGTTCCTTAAAGTACTT-AAGACGAACCATTCCTTCGAACAATTTA
65 TGAGTTCTTTTATAACTTCGATTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCGAGCAATTTT
* * **
24699038 CCGAGCATTCCATGCTCGAGAAATAACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
129 CCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* *
24699103 TTTTGGTCTTTAAATTAAAAAGT
194 TTTTGGTCTTTGAATTAAAAACT
** * * * *
24699126 TATTTAAATGAGAATTGTTTCTCTCTTGCTTATTGGCCGAATTTCCGAACTTGTCAAACTTTTAT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAT
* * * * ** * **
24699191 GAGTACTTTTATGACTTCGATTCCTTAAAGTACTCAAGACTATTGATTCCTTCGAGTAATTTTTT
66 GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * * *
24699256 GAACATTCCATGTTCGGGAAATCGTACCATTTGCTCTAAATAGTTTGTCATTTTGTAAACAACTT
131 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* *
24699321 TTTGTCTTTAAATTAAAAACT
196 TTGGTCTTTGAATTAAAAACT
* * * * *
24699342 AATTTACGTGAGAATTTTTTTGTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTA
1 TATTTACGTGAGAA-TTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * *
24699407 AGAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTT
65 TGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* *
24699472 CGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAGACAACC
130 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-C
* *
24699537 TTTT-GTCTTTAAAGTAAAAACT
194 TTTTGGTCTTTGAATTAAAAACT
* * * * * *
24699559 TATTTACGTGAGTATT-TTTCACTCTTGGTTCTTGGACGAACATT-CAAACCTGTCAAACATTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCGAACTTGTCAAACTTTTA
* * * * ** * *
24699622 CGAGTTCTTTTATAACTTCGATT-CTTGAGACTGTTCAAGGTGATCCATTCCTACGACCAATTTT
65 TGAGTTCTTTTATAACTTCGATTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* *** *
24699686 TCGAACATTCCATGCTCAATAAATCACATCA-TTGGT-TAAAATAGTTT-TCAATTTTGTAAA-A
129 CCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAATAGTTTGTC-ATTTTGTAAACA
*
24699747 A-TTTTGGTCTTTGAATTAAAAATT
192 ACTTTTGGTCTTTGAATTAAAAACT
* * * * *
24699771 TATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGATGAATTTTCGAACTTGTCAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAT
* * * ** * * *
24699836 AAGTTC-TTTATAACTTCGGTTCCTTAAAGTATTAAAGACGATTTAGTCCTTCGAGTAATTTTTC
66 GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * * *
24699900 GAACATTCCACGCTCGGGAAATCGCATTATTTGGTCGAAATAGTTTGT-ATTTTGTAAAAAACTT
131 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
*
24699964 TTGGTCTTTAAATTAAAAACT
196 TTGGTCTTTGAATTAAAAACT
* * *
24699985 TATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCTGAACATT-TCAAACATTTT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC-TTGTCAAAC-TTTT
* * *
24700049 A-GAGTTCTTTTATAACTTCTG-TTCCTGAGAGTATTCAAGACGATCCATTCCGTT-GACCAA-T
64 ATGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATT
* * * * * *
24700110 TTCCCAACATTCCATGCTCGGGAATTTGTATAATTTGGTCTAAATATTTTGTCATTTTGTAAACA
127 TTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* *
24700175 ACTTTTGGTCTATGAATTAAAAATT
192 ACTTTTGGTCTTTGAATTAAAAACT
* * * * *
24700200 TATTTATGTGAG--TTGTTTCTCTCTTAGTTTTTGGACAAACTTCCAAACTTGTCAAA-TATTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT-TTTA
* * *
24700262 AGAGTTTTTTTATAACTTCGGTTCC-TAAGAGTATTCAAGACGATCCATTCCTTCGA-CAAATTT
65 TGAGTTCTTTTATAACTTCGATTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGC-AATTT
* * * ** * *
24700325 TCCAAACATTTCATGCTCAGGAAATTTCATCATTTGGTCTAAATAGTTTGTCATTTGGTAATCAA
128 TCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* *
24700390 TTTTTGCTCTTTGAATTAAAAACT
193 CTTTTGGTCTTTGAATTAAAAACT
* * * ** * * * * *
24700414 TATTTCCGTCAAAATTGTTTCTAACTT-TTTCTTGGACGAACTTTCGAACTTGTCAAAATTGTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAT
* * * *
24700478 GAGTTCTTTTATAACATC-AGTACCTTAAAGTCTTCACA-ACGATCAATTCCTTCGAGCACA-TT
66 GAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGCA-ATTT
* * * * *
24700540 TCCGAACATTCCATACTCCGAAAATCACATCATTTGGTGTAAATAGTTTTGTCATTTTGTAAACA
128 TCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACA
24700605 ACTTTTGGTCTTTGAATTAAAAACT
192 ACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
24700630 TATTTACGTGAGAATTGTTTGTCTATTGGTTCCTGGATGAACTTCCGAACTTGTCAAACATTTAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAT
* * * *
24700695 GAGTTCTTTT-TATCTTC-AGTTCC-TAAGAGCATTCAAGACGATCCATTCCTTCGACCAACTTT
66 GAGTTCTTTTATAACTTCGA-TTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
24700757 ACGAACATTCCATGCTCAGGAAATCGCACCATTTG
129 CCGAACATTCCATGCTCGGGAAATCGCATCATTTG
24700792 TTTTTCACAT
Statistics
Matches: 1760, Mismatches: 286, Indels: 104
0.82 0.13 0.05
Matches are distributed among these distances:
211 5 0.00
212 116 0.07
213 149 0.08
214 357 0.20
215 347 0.20
216 421 0.24
217 239 0.14
218 87 0.05
219 39 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAT
GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
TTGGTCTTTGAATTAAAAACT
Found at i:24702363 original size:216 final size:216
Alignment explanation
Indices: 24700854--24703936 Score: 2671
Period size: 216 Copynumber: 14.3 Consensus size: 216
24700844 TCTTTTATAA
** * ** *
24700854 CTTCGACCAATTTTGAGAGCATTCCCATGCTCG-GAAATCGCATCATTTCATCTAAATAGTTTGT
1 CTTCGACCAATTTTCCGAACATT-CCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGT
* ** ** * **
24700918 CATTTTGTAAAAAAAATTTGGAATTTGAATTAAAAACCTATTTACGTGAGAATTGTTTAACTCTT
65 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* ** * * * * *
24700983 GGATCTTTTAAACGAAC-TTCTGAACTTATTAGACATTTACGAGTTCTTTTATGACTTC-GTTCC
130 GG-T-TCTTGGACGAACTTTC-GAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCC
* * *
24701046 TTAA-AGTATTGAGGACAATCCATTC
192 -TAAGAGTATTCAAGACGATCCATTC
* * ** ** * ** * * *
24701071 ATTTGAGAAATTTTTTGAATATTTGATGCTCGA-AAATTGCATCATTTTGTCTAAATAGTTTGTC
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTC
* * * *
24701135 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTGTTGACGTGAGAATTTTTTCTCTATTG
66 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * * * *
24701200 GTTATTGGCCAAAC-TTCCAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTTGGTT-CTAGA
131 GTTCTTGGACGAACTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTA-A
24701263 GAGTATTCAAGACGATCCATTC
195 GAGTATTCAAGACGATCCATTC
* * * *
24701285 CTTCGACCAATTTTACGAACATTCCATGTTCGGGAAATCGCATCGTTTGGTCTAAATATTTTGTC
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTC
* * **
24701350 ATTTTGTAATA-AACTTTTTGTCTTTGAATTAAAAAC--ATTTTCGTGAGAATTG-TT-GGTCTT
66 ATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * *
24701410 GGTTCTTGG-CTAAAC-TCCTGAACTTGTTAAACTTTTATA-ACTTCCTTTT-TAACTTCGATTT
130 GGTTCTTGGAC-GAACTTTC-GAACTTGTCAAACATTTA-AGAGTT-CTTTTATAACTTCG-GTT
* *
24701471 CTTAA-AGTATTGAAGACGATCCATTC
190 CCTAAGAGTATTCAAGACGATCCATTC
* * * ** * * * *
24701497 TTTCGAGCAATTTTCTGAACATTCCACACTCGAGAAGTCGCATCATTTGCTCTAAATAGTATGTC
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTC
* * * * *
24701562 GTTTTGGAAA-AACCTTTTGGTCTTTTAATTAAAAACCTATTTTACATGAGAATTGTTTCTCTCT
66 ATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCT
** * * * * * * ** *
24701626 TACTTTTTGGACAAACTTTAGAACTTGTCAAACATTTACGAGTTCTTTTAAAACCTCAATTCCTG
129 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTA
* *
24701691 AGAGTATTCAAGATGATCAATTC
194 AGAGTATTCAAGACGATCCATTC
* * * *
24701714 CTTCGACCAATTTTCTGAACATTCCATGTTCGGGAAATCACATCA-TTGGTTCTAAATAGTTTT-
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGG-TCTAAATA-TTTTG
* * * * *
24701777 TAATTTTCTAAACAAATTTTGGTCTTTGAATTAAAAAATTATTTACGTG-GAAATCG-TT-TCTC
64 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTC
* * * **
24701839 TTGGTTCTTGGATGAATTTTCGAAC-TGTCAAACTTTTACA-AGTTC-TTTATAACTTCTATTCC
128 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTA-AGAGTTCTTTTATAACTTCGGTTCC
* ** * *
24701901 TTAA-AGTATTAAAGGGGATTCAGTC
192 -TAAGAGTATTCAAGACGATCCATTC
** * * * * *
24701926 CTTCGATTAATTTTCCGAACA-TCCACGCTCGGGAAATCGCATTATTTGGTCGAAATACTTTGT-
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTC
* * *
24701989 ATTTTGTAAAAAACTATTGGTCTTTGAATTAAAAACTTATTT--GTGATAATTGTTTCTCTCTTG
66 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * * * * *
24702052 GTTCTTGTACGAACTTCCAAACTT-TCAAACATTTTAGAGTTCTTTTATAACTTCTGTTCCTGAG
131 GTTCTTGGACGAACTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAG
24702116 AGTATTCAAGACGATCCATTC
196 AGTATTCAAGACGATCCATTC
* * * * * * *
24702137 CTTTGACCAATTTCCCCAACATTCCATGCTCGAGAATTTGTATAATTTGGTCTAAATATTTTGTC
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTC
* * *
24702202 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTGTTGACGTGAGAATTTTTTCTCTCTTG
66 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * * * *
24702267 GTTATTGGCCAAACTTTCGAACTTGTCAAACATTTAAGAGTTCTCTTATAACTTCGGTTCCAAAG
131 GTTCTTGGACGAACTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAG
24702332 AGTATTCAAGACGATCCATTC
196 AGTATTCAAGACGATCCATTC
* * * ** ** *
24702353 CTTCGACCAATTTTACGAACATCCCATGTTCGAGAAATCGCATCGGTTGGTCTAAATAGGTTATC
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTC
* * * * *
24702418 AATTTGTAATA-AACTTTTTGTCTTTAAATTAAAAAC--ATTTTCGTGAGAATTGTTTCTCTTTT
66 ATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * * *
24702480 GATTCTTGG-CAGAACTTCCGAACTTGTTAAACTTTTATGACTTCTTTTATAACTTCGGTTTCTC
130 GGTTCTTGGAC-GAACTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCT-
* *
24702544 CA-AGTATTCAAGATGATCCATTC
193 AAGAGTATTCAAGACGATCCATTC
* * * * * *
24702567 CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATTGTGTATCATCTGTTCTAAATACTATG
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAA-T-CGCATCATTTGGTCTAAATATTTTG
** * * * *
24702632 TTGTTTTGT-AA-AACTTTTGGTCTTTAAATTAAAACCTTTTTTACATGAGAATTGTTTCTCTCT
64 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * * *
24702695 TAGTTCTTTGACGAACTTTCGAACTTGTTAAACATTTACGAGTTCTTTTAAAACCTCGGTTCCTG
129 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTA
*
24702760 AGAGTATTCAAGATGATCCATTC
194 AGAGTATTCAAGACGATCCATTC
* * ** * **
24702783 CTTTGGCCAATTTTTTGAACATTCCATGTTCCGA-AAATCAAATCA-TTGGTTCTAAATAGTTTT
1 CTTCGACCAATTTTCCGAACATTCCATGCT-CGAGAAATCGCATCATTTGG-TCTAAATA-TTTT
* * * * *
24702846 -TAATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTATTTATGTGAAAATTGTTTCCCTC
63 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* *
24702910 TTGGTTCTT-GACGAATTTTCGAACTTGTCAAA-ATTTTACA-AGTTTCTTTTATAACTTTGGTT
128 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACA-TTTA-AGAG-TTCTTTTATAACTTCGGTT
* * ** *
24702972 CCTTAA-AGTATTAAAGGCGATTTAGTC
190 CC-TAAGAGTATTCAAGACGATCCATTC
* ** * * *
24702999 CTTCAAGTAATTTT-TGAACATTCCATGCT-TAGGAAATTGCATCATTTGGTCTAAATATTTTGT
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATATTTTGT
* ** *
24703062 CATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTATTTCAGAATTGTTTCTCTCTT
65 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
*** * * * * * *
24703127 GGTTCTTGGACGAACACCCGAAATTGTCAAACA-ATAACGAGTTCTTTTATAACTTTGTTTCTTG
130 GGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTAA-GAGTTCTTTTATAACTTCGGTTCCTA
* * *
24703191 AGAGTGTTCATGATGATCCATTC
194 AGAGTATTCAAGACGATCCATTC
* * * * *
24703214 CTACGAACAATTTTTCGAGCATTCCATGCTC-AGGAAATCACATCATTTTTGG--TAAATATTTT
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGA-GAAATCGCATCA--TTTGGTCTAAATA-TTT
* * * * * * *
24703276 TGTAATTTTGTAAACAACCTTTAGTCTTT-AATTAAAAATTTATTTTCGTGAGAATAGTTTCTAT
62 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * *
24703340 CTTGGTTCTTGGACAAACTTCCGAACTTGTCATAACATTTATGATTTCTTTTATAACTTCGGTTA
127 CTTGGTTCTTGGACGAACTTTCGAACTTGTCA-AACATTTAAGAGTTCTTTTATAACTTCGGTTC
* * *
24703405 ATATGAGTATTCAAGACTATCCATTC
191 CTAAGAGTATTCAAGACGATCCATTC
* * *
24703431 CTTTGACCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCA-TTGAGTCTACATAGTTTT-
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTG-GTCTAAATA-TTTTG
* * * * * *
24703494 TAATTTTGTAAAAATACTTTTTTTGG-CCTTGAATTAAAAACTGATTCACATGAGAATTGTTTCT
64 TCATTTTGTAAACA-AC---TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * **
24703558 CTCTTTGTTCTTGGATGAA-TTTCAGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGT
125 CTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGT
* *
24703622 TCATTAA-AGTATTAAATG-CGATCCATTC
189 TC-CTAAGAGTATTCAA-GACGATCCATTC
* * * ** * * * *
24703650 CTCCAAGCAATTTTTTGAA-ATTTCCATGCTCGGGAAATCGCATCATTTGGTTTTAATAGTTTGT
1 CTTCGACCAATTTTCCGAACA-TTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGT
* * ** * *
24703714 CATTTTGTAAAAAAACTTTTGGTCTTTGAATTAAAAACCTATTTATATAAGAATTGTTTCTCACT
65 CATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * * * *
24703779 TGGTTTTTGAATGAAC-TTCCAACTTGTCAAACATTTAAGTGTTCTTTCATAACTTCTGTTCCTC
129 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTA
*
24703843 TGAGTATTCAAGACGATCCATTC
194 AGAGTATTCAAGACGATCCATTC
* ** *
24703866 CTTCGACCAAATTT-CGAACATTCCATTATC-AGGAAAT-GCATCATTCGG-CTAAATAGTTTT-
1 CTTCGACCAATTTTCCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATA-TTTTG
24703926 TCATTTTGTAA
64 TCATTTTGTAA
24703937 TTTCTCTCTG
Statistics
Matches: 2302, Mismatches: 464, Indels: 205
0.77 0.16 0.07
Matches are distributed among these distances:
208 7 0.00
209 3 0.00
210 81 0.04
211 96 0.04
212 216 0.09
213 128 0.06
214 270 0.12
215 309 0.13
216 683 0.30
217 321 0.14
218 18 0.01
219 103 0.04
220 67 0.03
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTC
ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
GTTCTTGGACGAACTTTCGAACTTGTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTAAG
AGTATTCAAGACGATCCATTC
Found at i:24703169 original size:431 final size:427
Alignment explanation
Indices: 24700854--24703936 Score: 2574
Period size: 431 Copynumber: 7.2 Consensus size: 427
24700844 TCTTTTATAA
** * ** *
24700854 CTTCGACCAATTTTGAGAGCATTCCCATGCTCGGAAATCGCATCATTTCATCTAAATAGTTTGTC
1 CTTCGACCAATTTTCCGAACATT-CCATGCTCGGAAATCGCATCATTTGGTCTAAATATTTTGTC
** ** * **
24700919 ATTTTGTAAAAAAAATTTGGAATTTGAATTAAAAACCTATTTACGTGAGAATTGTTTAACTCTTG
65 ATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* ** * * * * *
24700984 GATCTTTTAAACGAACTTCTGAACTTATTAGACATTTACGAGTTCTTTTATGACTTC-GTTCCTT
130 G-T-TCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * * * * ** *
24701048 AAAGTATTGAGGACAATCCATTCATTTGAGAAATTTTTTGAATATTTGATGCT-CGAAAATTGCA
193 AAAGTATTCAAGACGATCCATTCCTTCG-GCAATTTTTTGAACATTCCATGCTCCGAAAATCGCA
* * *
24701112 TCATT-TTGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTGTT
257 TCATTGGT-TCTAAATAGTTTGTAATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACTTATT
* * * * * * * *
24701176 GACGTGAGAATTTTTTCTCTATTGGTTATTGGCCAAAC-TTCCAACTTGTCAAACATTTAAGAGT
320 TATGTGAGAATTGTTTCTCTCTTGGTTCTT-GACGAACTTTCGAACTTGTCAAACATTT-AGAGT
*
24701240 TCTTTTATAACTTTGGTT-CTAGAGAGTATTCAAGACGATCCATTC
383 TCTTTTATAACTTTGGTTCCT-TAGAGTATTCAAGACGATCCATTC
* * *
24701285 CTTCGACCAATTTTACGAACATTCCATGTTCGGGAAATCGCATCGTTTGGTCTAAATATTTTGTC
1 CTTCGACCAATTTTCCGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCTAAATATTTTGTC
* * * **
24701350 ATTTTGTAATAAACTTTTTGTCTTTGAATTAAAAAC--ATTTTCGTGAGAATTG-TT-GGTCTTG
65 ATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * * ** * * *
24701411 GTTCTTGG-CTAAAC-TCCTGAACTTGTTAAACTTTTATAACTTCCTTTT-TAACTTCGATTTCT
130 GTTCTTGGAC-GAACTTCC-GAACTTGTCAAACATTTACGAGTT-CTTTTATAACTTCGGTTCCT
* * * ** *
24701473 TAAAGTATTGAAGACGATCCATTCTTTCGAGCAATTTTCTGAACATTCCACACT-CGAGAAGTCG
192 TAAAGTATTCAAGACGATCCATTCCTTCG-GCAATTTTTTGAACATTCCATGCTCCGA-AAATCG
* * * ** * * *
24701537 CATCATTTGCTCTAAATAGTATGTCGTTTTGGAAAAACCTTTTGGTCTTTTAATTAAAAACCTAT
255 CATCATTGGTTCTAAATAGTTTGTAATTTTGTAAAAA-CTTTTGGTCTTTGAATTAAAAACTTA-
** ** * * *
24701602 TTTACATGAGAATTGTTTCTCTCTTACTTTTTGGACAAACTTTAGAACTTGTCAAACATTTACGA
318 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTT-GACGAACTTTCGAACTTGTCAAACATTTA-GA
* * *** * * *
24701667 GTTCTTTTAAAACCTCAATTCCTGAGAGTATTCAAGATGATCAATTC
381 GTTCTTTTATAACTTTGGTTCCTTAGAGTATTCAAGACGATCCATTC
* * *
24701714 CTTCGACCAATTTTCTGAACATTCCATGTTCGGGAAATCACATCA-TTGGTTCTAAATAGTTTT-
1 CTTCGACCAATTTTCCGAACATTCCATGCTC-GGAAATCGCATCATTTGG-TCTAAATA-TTTTG
* * * *
24701777 TAATTTTCTAAACAAA-TTTTGGTCTTTGAATTAAAAAATTATTTACGTG-GAAATCG-TT-TCT
63 TCATTTTGTAAA-AAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG-AATTGTTTCTCT
* * * * * **
24701838 CTTGGTTCTTGGATGAATTTTCGAAC-TGTCAAACTTTTACAAGTTC-TTTATAACTTCTATTCC
126 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCC
* ** * * ** ** * * *
24701901 TTAAAGTATTAAAGGGGATTCAGTCCTTCGATTAATTTTCCGAACA-TCCACGCTCGGGAAATCG
191 TTAAAGTATTCAAGACGATCCATTCCTTCG-GCAATTTTTTGAACATTCCATGCTCCGAAAATCG
* * * *
24701965 CATTATTTGG-TCGAAATACTTTGT-ATTTTGTAAAAAACTATTGGTCTTTGAATTAAAAACTTA
255 CATCA-TTGGTTCTAAATAGTTTGTAATTTTGT-AAAAACTTTTGGTCTTTGAATTAAAAACTTA
* * *
24702028 -TT-TGTGATAATTGTTTCTCTCTTGGTTCTTGTACGAACTTCCAAACTT-TCAAACATTTTAGA
318 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTG-ACGAACTTTCGAACTTGTCAAACA-TTTAGA
*
24702090 GTTCTTTTATAACTTCT-GTTCCTGAGAGTATTCAAGACGATCCATTC
381 GTTCTTTTATAACTT-TGGTTCCTTAGAGTATTCAAGACGATCCATTC
* * * * * * *
24702137 CTTTGACCAATTTCCCCAACATTCCATGCTCGAGAATTTGTATAATTTGGTCTAAATATTTTGTC
1 CTTCGACCAATTTTCCGAACATTCCATGCTCG-GAAATCGCATCATTTGGTCTAAATATTTTGTC
* * * *
24702202 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTGTTGACGTGAGAATTTTTTCTCTCTTG
65 ATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * * * * * *
24702267 GTTATTGGCCAAACTTTCGAACTTGTCAAACATTTAAGAGTTCTCTTATAACTTCGGTTCC-AAA
130 GTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* ** * *
24702331 GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTACGAACATCCCATG-TTCGAGAAATCGCA
195 -AGTATTCAAGACGATCCATTCCTTCG-GCAATTTTTTGAACATTCCATGCTCCGA-AAATCGCA
* * * * *
24702395 TCGGTTGG-TCTAAATAGGTTATCAA-TTTGTAATAAACTTTTTGTCTTTAAATTAAAAAC--AT
257 TC-ATTGGTTCTAAATAGTTTGT-AATTTTGTAA-AAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * *
24702456 TT-TCGTGAGAATTGTTTCTCTTTTGATTCTTGGCAGAACTTCCGAACTTGTTAAACTTTTATGA
319 TTAT-GTGAGAATTGTTTCTCTCTTGGTTCTTGAC-GAACTTTCGAACTTGTCAAACATTTA-GA
* * * * *
24702520 CTTCTTTTATAACTTCGGTTTCTCCA-AGTATTCAAGATGATCCATTC
381 GTTCTTTTATAACTTTGGTTCCT-TAGAGTATTCAAGACGATCCATTC
* * * * * *
24702567 CTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATTGTGTATCATCTGTTCTAAATACTATG
1 CTTCGACCAATTTTCCGAACATTCCATGCTCG-GAAA-T-CGCATCATTTGGTCTAAATATTTTG
** * * * *
24702632 TTGTTTTGT--AAAACTTTTGGTCTTTAAATTAAAACCTTTTTTACATGAGAATTGTTTCTCTCT
63 TCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * * *
24702695 TAGTTCTTTGACGAACTTTCGAACTTGTTAAACATTTACGAGTTCTTTTAAAACCTCGGTTCCTG
128 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * **
24702760 AGAGTATTCAAGATGATCCATTCCTTTGGCCAATTTTTTGAACATTCCATGTTCCGAAAATCAAA
193 AAAGTATTCAAGACGATCCATTCCTTCGG-CAATTTTTTGAACATTCCATGCTCCGAAAATCGCA
* *
24702825 TCATTGGTTCTAAATAGTTTTTAATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTATTT
257 TCATTGGTTCTAAATAGTTTGTAATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * *
24702890 ATGTGAAAATTGTTTCCCTCTTGGTTCTTGACGAATTTTCGAACTTGTCAAA-ATTTTACAAGTT
321 ATGTGAGAATTGTTTCTCTCTTGGTTCTTGACGAACTTTCGAACTTGTCAAACA-TTTA-GAG-T
* * * ** *
24702954 TCTTTTATAACTTTGGTTCCTTAAAGTATTAAAGGCGATTTAGTC
383 TCTTTTATAACTTTGGTTCCTTAGAGTATTCAAGACGATCCATTC
* ** * * *
24702999 CTTCAAGTAATTTT-TGAACATTCCATGCTTAGGAAATTGCATCATTTGGTCTAAATATTTTGTC
1 CTTCGACCAATTTTCCGAACATTCCATGC-TCGGAAATCGCATCATTTGGTCTAAATATTTTGTC
** *
24703063 ATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTATTTCAGAATTGTTTCTCTCTTG
65 ATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
** * * * * *
24703128 GTTCTTGGACGAACACCCGAAATTGTCAAACAATAACGAGTTCTTTTATAACTT-TGTTTCTTGA
130 GTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTT-A
* * * * * * * * * * *
24703192 GAGTGTTCATGATGATCCATTCCTACGAACAATTTTTCGAGCATTCCATGCTCAGGAAATCACAT
194 AAGTATTCAAGACGATCCATTCCTTCG-GCAATTTTTTGAACATTCCATGCTCCGAAAATCGCAT
* * * * * *
24703257 CATT-TTTGGTAAATATTTTTGTAATTTTGTAAACAACCTTTAGTCTTT-AATTAAAAATTTATT
258 CATTGGTT-CTAAATA-GTTTGTAATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACTTATT
* * * *
24703320 T-TCGTGAGAATAGTTTCTATCTTGGTTCTTGGACAAACTTCCGAACTTGTCATAACATTTATGA
320 TAT-GTGAGAATTGTTTCTCTCTTGGTTCTT-GACGAACTTTCGAACTTGTCA-AACATTTA-GA
* * ** *
24703384 TTTCTTTTATAACTTCGGTT-AATATGAGTATTCAAGACTATCCATTC
381 GTTCTTTTATAACTTTGGTTCCTTA-GAGTATTCAAGACGATCCATTC
* * *
24703431 CTTTGACCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCA-TTGAGTCTACATAGTTTT-
1 CTTCGACCAATTTTCCGAACATTCCATGCTCG-GAAATCGCATCATTTG-GTCTAAATA-TTTTG
* * * * *
24703494 TAATTTTGTAAAAATACTTTTTTTGG-CCTTGAATTAAAAACTGATTCACATGAGAATTGTTTCT
63 TCATTTTGTAAAAA-AC---TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * * *
24703558 CTCTTTGTTCTTGGATGAATTTCAGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTT
124 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT
* * * * * *
24703623 CATTAAAGTATTAAATG-CGATCCATTCCTCCAAGCAATTTTTTGAA-ATTTCCATGCTCGGGAA
189 CCTTAAAGTATTCAA-GACGATCCATTCCTTC-GGCAATTTTTTGAACA-TTCCATGCTCCGAAA
* *
24703686 ATCGCATCATTTGGTT-TTAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGAATTAAAA
251 ATCGCATCA-TTGGTTCTAAATAGTTTGTAATTTTGT--AAAAACTTTTGGTCTTTGAATTAAAA
* * * * * * *
24703750 ACCTATTTATATAAGAATTGTTTCTCACTTGGTTTTTGAATGAAC-TTCCAACTTGTCAAACATT
313 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTG-ACGAACTTTCGAACTTGTCAAACATT
* *
24703814 TAAGTGTTCTTTCATAACTTCT-GTTCCTCT-GAGTATTCAAGACGATCCATTC
377 T-AGAGTTCTTTTATAACTT-TGGTTCCT-TAGAGTATTCAAGACGATCCATTC
* ** *
24703866 CTTCGACCAAATTT-CGAACATTCCATTATCAGGAAAT-GCATCATTCGG-CTAAATAGTTTT-T
1 CTTCGACCAATTTTCCGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCTAAATA-TTTTGT
24703927 CATTTTGTAA
64 CATTTTGTAA
24703937 TTTCTCTCTG
Statistics
Matches: 2147, Mismatches: 404, Indels: 201
0.78 0.15 0.07
Matches are distributed among these distances:
422 7 0.00
423 134 0.06
424 48 0.02
425 56 0.03
426 77 0.04
427 141 0.07
428 107 0.05
429 307 0.14
430 313 0.15
431 356 0.17
432 220 0.10
433 61 0.03
434 27 0.01
435 71 0.03
436 162 0.08
437 57 0.03
438 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (427 bp):
CTTCGACCAATTTTCCGAACATTCCATGCTCGGAAATCGCATCATTTGGTCTAAATATTTTGTCA
TTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
TTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
GTATTCAAGACGATCCATTCCTTCGGCAATTTTTTGAACATTCCATGCTCCGAAAATCGCATCAT
TGGTTCTAAATAGTTTGTAATTTTGTAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG
AGAATTGTTTCTCTCTTGGTTCTTGACGAACTTTCGAACTTGTCAAACATTTAGAGTTCTTTTAT
AACTTTGGTTCCTTAGAGTATTCAAGACGATCCATTC
Found at i:24705569 original size:23 final size:23
Alignment explanation
Indices: 24705539--24705648 Score: 80
Period size: 23 Copynumber: 4.7 Consensus size: 23
24705529 ACACTAGCGC
24705539 GCTCTCTGTTTAGCAC-GTCTCGT
1 GCTCTCTGTTTAGCACTGTCT-GT
*
24705562 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG-T-TTAGCACTGTCTGT
* * *
24705587 GCTCTCTGATTAGCACTTTATGT
1 GCTCTCTGTTTAGCACTGTCTGT
* ** * * *
24705610 GTTCTCTAATTAGTACTTTGTGT
1 GCTCTCTGTTTAGCACTGTCTGT
*
24705633 ACTCTCTG-TTAGCACT
1 GCTCTCTGTTTAGCACT
24705649 ATGTGTGTTC
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
22 7 0.10
23 44 0.61
24 1 0.01
25 17 0.24
26 3 0.04
ACGTcount: A:0.15, C:0.23, G:0.19, T:0.44
Consensus pattern (23 bp):
GCTCTCTGTTTAGCACTGTCTGT
Found at i:24705576 original size:25 final size:24
Alignment explanation
Indices: 24705539--24705603 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 24
24705529 ACACTAGCGC
24705539 GCTCTCTGT-TTAGCAC-GTCTCGT
1 GCTCTCTGTATTAGCACTGTCT-GT
*
24705562 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG-TATTAGCACTGTCTGT
24705587 GCTCTCTG-ATTAGCACT
1 GCTCTCTGTATTAGCACT
24705604 TTATGTGTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
23 17 0.45
24 1 0.03
25 17 0.45
26 3 0.08
ACGTcount: A:0.12, C:0.26, G:0.22, T:0.40
Consensus pattern (24 bp):
GCTCTCTGTATTAGCACTGTCTGT
Found at i:24707560 original size:216 final size:216
Alignment explanation
Indices: 24706245--24708680 Score: 2228
Period size: 217 Copynumber: 11.4 Consensus size: 216
24706235 GGGTGTTACA
* * * *
24706245 TCCATGCTCGGGAAATCGCTTC-GTTGGTCTAAAGAGTTTGTCATTTTGTAATA-AACTTTTTGT
1 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAACTTTTGGT
* ** * * * *
24706308 CCTCGAATTAAAAGC--ATTT-CAATGAGAATTATTTCTCTCTTGGTTCTTGGTA-GAAGTTCTG
65 CTTTAAATTAAAAACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAACTTCTG
* * * * * *
24706369 AACTTGTTATACTTTTATGAGTTCTTTTATAACTT-TGTTCCTT-AAAGTATTCAAGACGATCCA
128 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTATTCAAGACGATCCA
** * * *
24706432 TTCCTTTAAGCTATTTT-TCGAGCAT
192 TTCCTTCGACCAATTTTCT-GAACAT
* *
24706457 TCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTTGTCATTTTGTATAA-ATCTTTTGG
1 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTA-AACAACTTTTGG
*
24706521 TCTTTAAATTAAAAACTTGTTTACGTGAGAATTGTTTCTCT-TTAGGTTCTTGGACGACGAACTT
64 TCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTT-G--GACGAACTT
* * * *
24706585 CTAAACTTGTCAAACATTTAAC-AGTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGACGAT
125 CTGAACTTGTCAAACATTT-ACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGAT
* *
24706649 CCATTCCTTCGACCAATTTTCTAAAAAT
189 CCATTCCTTCGACCAATTTTCTGAACAT
* * * *
24706677 TCCATGCTCGGGAAATTGCATCATTCGGTTTAAATAGTTTGTCATTTTGTAATA-AACTTTTTGT
1 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAACTTTTGGT
* * * *
24706741 CTATGAATTAAAAAC--ATTT-TGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CAGAACTTCCCG
65 CTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTT-CTG
* * * * * * * * * * * *
24706802 AACTTTTTATACTTTTATGAATTCTTTTGTAACTTCTGTTCGTT-AAAGTATTCAAGATGAACAA
128 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTC-TTGAGAGTATTCAAGACGATCCA
* ** *
24706866 TTCTTTCGAGAAATCTTCCT-AACAT
192 TTCCTTCGACCAAT-TTTCTGAACAT
* * * * *
24706891 TCCAAGCTCGGGAAATTGCATCATTTGGCCTAAA-AGTTTGTAATTTTGTAAACAACTTTTGGTG
1 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* ** * * *
24706955 TTTAAATTAAAAAACTTATTTATGTG-GCAATTGTTTCTCTCTTCTTTTTCGTGGATGAACATCT
66 TTTAAATT-AAAAACTTATTTACGTGAG-AATTGTTTCTCTC-T-TGGTTCTTGGACGAACTTCT
* * * * *
24707019 AAACTTGTCAAACATTTACGAGTTCTTTTATAACATCGATTCTTGAGAGTTTTCAAGATGATCC-
127 GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCA
*
24707083 TTCCCTTCGATCAATTTT-TGAACAT
192 TT-CCTTCGACCAATTTTCTGAACAT
** * * * *
24707108 TCCATGCTTAGGAAATCGCATCATTTGGTCTAATTTGTATGTCATTTTTGAAAACAACTTTTGGT
1 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTGTAAACAACTTTTGGT
* * * * * * * ** *
24707173 CCTTGAATTAAAAACTTATTTACGTGAGAACTGTTTTTCTATTGG-TCTTTGGCCTAACTAGTTA
65 CTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACTTCTGA
* * * *
24707237 ACTTATCAAACTTTTACGAGTTCTTTTAACAACTTCGGTTCTTCTA-AGTATTCAAGACGATCCA
129 ACTTGTCAAACATTTACGAGTTCTTTT-ATAACTTCGGTTCTT-GAGAGTATTCAAGACGATCCA
* * * *
24707301 TTCATTTGAGCAATTTTCCGAACAT
192 TTCCTTCGACCAATTTTCTGAACAT
24707326 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
1 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* * * * *
24707391 TTTAAATTAAAAACTTACTTCCGTTAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTTTGAAC
66 TTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAC
* * * * *
24707456 TAGTCAAACATATACGAGTTCTTTTATAACTTTGGCTCTTGAGAGTATTCAAGACGATCCATTCT
131 TTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCATTCC
*
24707521 TTCGACCAATTTTTTGAACAT
196 TTCGACCAATTTTCTGAACAT
** * * *
24707542 TCCATGCTTAGGAAATCGCATCA-TTGGCTCTAAATAGTTTTTTAATTTCGTAAACAACTTTTGG
1 TCCATGCTCGGGAAATCGCATCATTTGG-TCTAAATAG-TTTGTCATTTTGTAAACAACTTTTGG
* * * * * * * * *
24707606 CCTTTGAATTAAAAACTAATTCACGTGAGAATTGTTTCTCTCTT-GTACTAGGATGAATTTCAGA
64 TCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
* * * *
24707670 ACTTGTCAAACTTTTAACGAGTTCTTTTATAACTTCGGTTCCTTCA-AGTACTCAAGGCGATCCA
129 ACTTGTCAAACATTT-ACGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTATTCAAGACGATCCA
* * **
24707734 TCCCTTCGAACAATTTTCCAAACAT
192 TTCCTTCGACCAATTTTCTGAACAT
* * * * * * *
24707759 TCCATGCTCGAG-AATCGCATCATTTGGAT-TTAATAGTTTGTTATTTGGAAAAAAACTTTTTTG
1 TCCATGCTCGGGAAATCGCATCATTTGG-TCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGG
* * * *** * * ** *
24707822 TCTTTGAATTAAAAACTTATTTATGTGAAAAAAATTTCTCTC--AGTTCTTGAAAAAACTTCTGG
64 TCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
* * * * * *
24707885 ACATGTCAAACATTTTA-GAGTTCTTGTATAACTTCGGTTCCTAAGAGTTTTCAAGATGATCCAT
129 ACTTGTCAAACA-TTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCAT
*
24707949 TCCTTCGACCAA-TTTCCGAACAT
193 TCCTTCGACCAATTTTCTGAACAT
* ** * * * * * *
24707972 TCCTTGCTTTGGATATCTG-ATAATTTGGTTTAAATAGTTTTTTCCTTTTGT-AATAACTTTT-G
1 TCCATGCTCGGGAAATC-GCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACTTTTGG
* * * *
24708034 TCTTTGAATTAAAAAC--ATTTTCGTGAGAATTGTTTCTTTCTTAGTTCTTGG-CAGAACTT-TC
64 TCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCT-
* * * * * * *
24708095 GAATTTGTTATACTTTTATGAGTTCTTTTATAACTTCGGTTCCTGAGAGT-GTCAAGACGATCCA
127 GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCA
*
24708159 TTCCTTCGAGCAATTTTCTGAACAT
192 TTCCTTCGACCAATTTTCTGAACAT
** * *
24708184 TCCATGCTCGGGAAATCATAACATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTC
1 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* * *
24708249 TTTAAATT-AAAACTTA-TT---T----ATTGTTTCTCTCTTGGTTCTTGGATGAACATCAGAAC
66 TTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAC
* * *
24708305 TTGTCAAACATTCACGAGTTCTTTTATAACTTCGATTCTT-AGAGTATTCAAGATGATCCATTCC
131 TTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCATTCC
24708369 TTCGACCAATTTTCTGAACAT
196 TTCGACCAATTTTCTGAACAT
** * * * * * *
24708390 AACGTGCTCGGGAAATTGCATCCTTTGGTCTAAATGGTTT-ACAATTTGTAAACAACTTTTGGTC
1 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* * * * * *
24708454 TTTAAATTAGAAACTTATTTCCGTGAGAATAGTTTCTCTCTTTGTTCTTGGACAAACTT-TCAAA
66 TTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAA
* * * *
24708518 CTTGTCAAACATTTACTAGTTCTTTTATAACTTTGATTCCTGAGAGTATTCAAGACGATCCATTC
130 CTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCATTC
* * *
24708583 CTTAGACAAATTTTATGAACAT
195 CTTCGACCAATTTTCTGAACAT
* * ** * * *
24708605 TCCATGCTCGGAAAATCGTATCATTAAGTCTAAATAGTTTTTAATTTTGTAAACAAATTTTGGTC
1 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
24708670 TTTAAA-TAAAA
66 TTTAAATTAAAA
24708681 TATAATTCAC
Statistics
Matches: 1803, Mismatches: 338, Indels: 163
0.78 0.15 0.07
Matches are distributed among these distances:
205 35 0.02
206 136 0.08
207 2 0.00
210 19 0.01
211 41 0.02
212 141 0.08
213 89 0.05
214 267 0.15
215 138 0.08
216 279 0.15
217 324 0.18
218 145 0.08
219 113 0.06
220 73 0.04
221 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
TTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAC
TTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCATTCC
TTCGACCAATTTTCTGAACAT
Found at i:24707750 original size:433 final size:432
Alignment explanation
Indices: 24706245--24708680 Score: 2263
Period size: 433 Copynumber: 5.7 Consensus size: 432
24706235 GGGTGTTACA
** * * * * * *
24706245 TCCATGCTCGGGAAATCGCTTCGTTGGTCTAAAGAG-TTTGTCATTTTGTAATA-AACTTTTTGT
1 TCCATGCTTAGGAAATCGCATCATTGGTCTAAATAGTTTTTTAATTTTGTAA-ACAACTTTTGGT
* * * * * * * *
24706308 CCTCGAATTAAAAGC-ATTTCA-ATGAGAATTATTTCTCTCTTGGTTCTTGGTA-GAA-GTTCTG
65 CTTTGAATTAAAAACTA-TTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCATGAACTTTCAG
* * * *
24706369 AACTTGTTATACTTTTATGAGTTCTTTTATAACTT-TGTTCCTTAAAGTATTCAAGACGATCCAT
129 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * *
24706433 TCCTT-TAAGCTATTTTTCGAGCATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTT
194 TCCTTCGAA-CAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TT
* * * *
24706497 TGTCATTTTGTATAA-ATCTTTTGGTCTTTAAATTAAAAACTTGTTTACGTGAGAATTGTTTCTC
257 TGTCATTTTGTA-AACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGT-TGAATTGTTTTTC
* *
24706561 T-TTAGGTTCTTGGACGACGAACTTCTAAACTTGTCAAACATTTAAC-AGTTCTTTTATAACTTT
320 TCTT-GGTTCTT-G--GACGAACTTCTGAACTTGTCAAACATTT-ACGAGTTCTTTTATAACTTC
* * * * *
24706624 GGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCTAAAAAT
380 GGTTCTTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCTGAACAT
** * * * * *
24706677 TCCATGCTCGGGAAATTGCATCATTCGGTTTAAATAG-TTTGTCATTTTGTAATA-AACTTTTTG
1 TCCATGCTTAGGAAATCGCATCATT-GGTCTAAATAGTTTTTTAATTTTGTAA-ACAACTTTTGG
* ** * *
24706740 TCTATGAATTAAAAAC-ATT-TTGTGAGAATTGTTTCTCTCTTGGTTCTTGGCA-GAACTTCCCG
64 TCTTTGAATTAAAAACTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCATGAACTTTCAG
* * * * * * * * * * *
24706802 AACTTTTTATACTTTTATGAATTCTTTTGTAACTTCTGTTCGTTAAAGTATTCAAGATGAACAAT
129 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * *
24706867 TCTTTCGAGA-AATCTTCCTAACATTCCAAGCTCGGGAAATTGCATCATTTGGCCTAAA-AGTTT
194 TCCTTCGA-ACAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
24706930 GTAATTTTGTAAACAACTTTTGGTGTTTAAATTAAAAAACTTATTTATGTGGCAATTGTTTCTCT
258 GTCATTTTGTAAACAACTTTTGGTCTTTAAATT-AAAAACTTATTTACGTTG-AATTGTTT-T-T
* * * * * * *
24706995 CTTCTT-TTTCGTGGATGAACATCTAAACTTGTCAAACATTTACGAGTTCTTTTATAACATCGAT
319 C-TCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGT
* *
24707059 TCTTGAGAGTTTTCAAGATGATCC-TTCCCTTCGATCAATTTT-TGAACAT
383 TCTTGAGAGTATTCAAGATGATCCATT-CCTTCGACCAATTTTCTGAACAT
* * * * * * *
24707108 TCCATGCTTAGGAAATCGCATCATTTGGTCTAATTTGTATGTCATTTTTGAAAACAACTTTTGGT
1 TCCATGCTTAGGAAATCGCATCA-TTGGTCTAAATAGTTTTTTAATTTTGTAAACAACTTTTGGT
* * * * * *
24707173 CCTTGAATTAAAAACTTATTTACGTGAGAACTGTTTTTCTATTGG-TCTTTGGCCT-AAC--T-A
65 CTTTGAATTAAAAAC-TATTCACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGCATGAACTTTCA
* * *
24707233 GTTAACTTATCAAACTTTTACGAGTTCTTTTAACAACTTCGGTT-CTTCTAAGTATTCAAGACGA
128 G--AACTTGTCAAACTTTTACGAGTTCTTTT-ATAACTTCGGTTCCTT-AAAGTATTCAAGACGA
* * *
24707297 TCCATTCATTTGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
189 TCCATTCCTTCGAACAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* *
24707362 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTACTTCCGTTAGAATTGTTTT
254 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTT-GAATTGTTTT
* * * * *
24707427 TCTCTTGGTTCTTGGACGAACTTTTGAACTAGTCAAACATATACGAGTTCTTTTATAACTTTGGC
318 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGT
* * *
24707492 TCTTGAGAGTATTCAAGACGATCCATTCTTTCGACCAATTTTTTGAACAT
383 TCTTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCTGAACAT
* *
24707542 TCCATGCTTAGGAAATCGCATCATTGGCTCTAAATAGTTTTTTAATTTCGTAAACAACTTTTGGC
1 TCCATGCTTAGGAAATCGCATCATTGG-TCTAAATAGTTTTTTAATTTTGTAAACAACTTTTGGT
* *
24707607 CTTTGAATTAAAAACTAATTCACGTGAGAATTGTTTCTCTCTT-GTACTAGG-ATGAA-TTTCAG
65 CTTTGAATTAAAAACT-ATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCATGAACTTTCAG
* * *
24707669 AACTTGTCAAACTTTTAACGAGTTCTTTTATAACTTCGGTTCCTTCAAGTACTCAAGGCGATCCA
129 AACTTGTCAAACTTTT-ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * *
24707734 TCCCTTCGAACAATTTTCCAAACATTCCATGCTCGAG-AATCGCATCATTTGGAT-TTAATAGTT
193 TTCCTTCGAACAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGG-TCTAAATAGTT
* * * * * * * *****
24707797 TGTTATTTGGAAAAAAACTTTTTTGTCTTTGAATTAAAAACTTATTTATG-TGAAAAAAATTTCT
257 TGTCATTTTGTAAACAAC-TTTTGGTCTTTAAATTAAAAACTTATTTACGTTGAATTGTTTTTCT
** * ** * * *
24707861 CTCAGTTCTTGAAAAAACTTCTGGACATGTCAAACATTTTA-GAGTTCTTGTATAACTTCGGTTC
321 CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACA-TTTACGAGTTCTTTTATAACTTCGGTTC
* * * *
24707925 CTAAGAGTTTTCAAGATGATCCATTCCTTCGACCAA-TTTCCGAACAT
385 TTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCTGAACAT
* * * * * ** *
24707972 TCCTTGCTTTGGATATCTG-ATAATTTGGTTTAAATAGTTTTTTCCTTTTGT-AATAACTTTT-G
1 TCCATGCTTAGGAAATC-GCATCA-TTGGTCTAAATAGTTTTTTAATTTTGTAAACAACTTTTGG
** * *
24708034 TCTTTGAATTAAAAAC-ATTTTCGTGAGAATTGTTTCTTTCTTAGTTCTTGGCA-GAACTTTC-G
64 TCTTTGAATTAAAAACTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCATGAACTTTCAG
* * * * * * *
24708096 AATTTGTTATACTTTTATGAGTTCTTTTATAACTTCGGTTCCTGAGAGT-GTCAAGACGATCCAT
129 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * ** * *
24708160 TCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCATAACATTTGGTCTAAATAGTTTT
194 TCCTTCGAACAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
*
24708225 TCATTTTGTAAACAACTTTTGGTCTTTAAATT-AAAACTTA--T---TT--ATTGTTTCTCTCTT
259 TCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTTGAATTGTTTTTCTCTT
* * * * *
24708282 GGTTCTTGGATGAACATCAGAACTTGTCAAACATTCACGAGTTCTTTTATAACTTCGATTCTT-A
324 GGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGA
24708346 GAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCTGAACAT
389 GAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCTGAACAT
** * ** * * * **
24708390 AACGTGCTCGGGAAATTGCATCCTTTGGTCTAAAT-GGTTTACAA-TTTGTAAACAACTTTTGGT
1 TCCATGCTTAGGAAATCGCAT-CATTGGTCTAAATAGTTTTTTAATTTTGTAAACAACTTTTGGT
* * * *
24708453 CTTTAAATTAGAAACTTATTTC-CGTGAGAATAGTTTCTCTCTTTGTTCTTGGACA--AACTTTC
65 CTTTGAATTAAAAAC-TA-TTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CATGAACTTTC
* * * * * *
24708515 A-AACTTGTCAAACATTTACTAGTTCTTTTATAACTTTGATTCCTGAGAGTATTCAAGACGATCC
127 AGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* ** * * **
24708579 ATTCCTTAG-ACAAATTTTATGAACATTCCATGCTCGGAAAATCGTATCATTAAGTCTAAATAGT
192 ATTCCTTCGAAC-AATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * *
24708643 TTTTAATTTTGTAAACAAATTTTGGTCTTTAAA-TAAAA
256 TTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAA
24708681 TATAATTCAC
Statistics
Matches: 1650, Mismatches: 287, Indels: 145
0.79 0.14 0.07
Matches are distributed among these distances:
416 5 0.00
417 49 0.03
418 101 0.06
420 79 0.05
421 104 0.06
422 1 0.00
424 8 0.00
425 59 0.04
426 85 0.05
427 23 0.01
428 21 0.01
429 9 0.01
430 45 0.03
431 131 0.08
432 242 0.15
433 302 0.18
434 213 0.13
435 132 0.08
436 39 0.02
437 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (432 bp):
TCCATGCTTAGGAAATCGCATCATTGGTCTAAATAGTTTTTTAATTTTGTAAACAACTTTTGGTC
TTTGAATTAAAAACTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCATGAACTTTCAGAA
CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
CTTCGAACAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
ATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTTGAATTGTTTTTCTCTTGG
TTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGA
GTATTCAAGATGATCCATTCCTTCGACCAATTTTCTGAACAT
Found at i:24709156 original size:216 final size:215
Alignment explanation
Indices: 24708739--24709905 Score: 787
Period size: 216 Copynumber: 5.5 Consensus size: 215
24708729 ATTTTAAAAC
* * * *
24708739 CTCG-GAAATCAAATCATTCGTTCTAAATAGTTTTTAATTTTGTAAACAAATTTTGGTCTTTGAA
1 CTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAAAC-AATTTTGGTCTTTGAA
* ** *
24708803 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAATTTTCAAACTTGCCA
65 TTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGCCA
** * * * * ** * *
24708868 AACTTTTACAAGTTCCTTTTTAACTTTGGTTCCTTAAAGTATTAAAGGCGATTTAGTCCTTCGAG
130 AACAATAACAAGTTCCTTTATAACTTTCGTTCCTTAAAGTATTAAAGACGATCCAGTCCTACGAC
*
24708933 TAATTTTCCGAACATTCCATG
195 CAATTTTCCGAACATTCCATG
* * *
24708954 CTCGAGAAATCGCATCATTTGGTCTAAATAGCTTGTCATTTTGTAAA-AAGCTTTTGGTCTTTGA
1 CTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAA--TTTTGGTCTTTGA
** * **
24709018 ATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTTACATCCGAACTTGTG
64 ATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGCC
* * * * * * * *
24709083 AAACAATAACGAGTT-CTGTTATAAC-TTCGTTTCTTGATAGTGTTCATGATGATCCATTCCTAC
129 AAACAATAACAAGTTCCT-TTATAACTTTCGTTCCTT-AAAGTATTAAAGACGATCCAGTCCTAC
* *
24709146 GACCAATTTTCTGAGCATTCCATG
192 GACCAATTTTCCGAACATTCCATG
* * * *
24709170 CTCGGGAAATCACATCATTTGGTCTAAATATTTTGTAATTTTATAAACAATTTTGGTCTTTAAAT
1 CTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAATTTTGGTCTTTGAAT
* * * * * * *
24709235 T--AAATTTTTTTTTCGTGAGAATAGTTTCTCTCTTGGTTCTTAGAGACGAACTTCCAAACTTGT
66 TAAAAACTTATTTAT-GTGAGAATTGTTTCTCTCTTGGTTCTT-G-GACAAACATCCAAACTTGC
* * * * *
24709298 TAAACATTTACAAGTTCTTTTAT-AC-TTCGGTTGC-T---G------AGA-G-T--A-T--T-C
128 CAAACAATAACAAGTTCCTTTATAACTTTC-GTTCCTTAAAGTATTAAAGACGATCCAGTCCTAC
** *
24709343 -A-AGATTTTCTGAACATTCCATG
192 GACCAATTTTCCGAACATTCCATG
* * ** * * * *
24709365 CTCGAGAAATCGCTTCATTGAGTCTAAATAGTTTTTAATTTTGTAAAAATACTTTTAGCCTTTGA
1 CTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACA-A-TTTTGGTCTTTGA
* ** ** * *
24709430 ATTAAAAA-TTGATTCACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA-TTTCAGAACTTG
64 ATTAAAAACTT-ATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCA-AACTTG
* ** * * * * * *
24709493 TCAAACTTTTACAAGTTCTTTTATAAC-TTCGGTTCATTAAAGTATTAAACACGATCCATTCCTC
127 CCAAACAATAACAAGTTCCTTTATAACTTTC-GTTCCTTAAAGTATTAAAGACGATCCAGTCCTA
* * *
24709557 CAAGCAATTTTTCGAACATTCCATG
191 CGACCAATTTTCCGAACATTCCATG
** * * * * *
24709582 CTCGAGAAATTGCATCATTTGGTTTTAATAGTTTGTCATTTTGTAAAAAACCTTTGGTCTTTGAA
1 CTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAA-TTTTGGTCTTTGAA
* * ** * * ** *
24709647 TTAAAAACCTATTTATGTAAGAATTGTTTCTGACTTGGTTTTTGAATGAACTTCC-AACTTGCCA
65 TTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGCCA
** * * * * * * *
24709711 AAC-AT-TTAAGTGTTCTTTCATAAC-TTCAATTCCTGAGAGTATTCAAGACGATCCATTCCTTC
130 AACAATAACAAGT-TCCTTT-ATAACTTTC-GTTCCTTAAAGTATTAAAGACGATCCAGTCCTAC
*
24709773 GACCAATTTT-CGAACATTCCATT
192 GACCAATTTTCCGAACATTCCATG
* * * ** *
24709796 CTCTG-GAAATTGA-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAATA-AGCTTTTAATCTAT
1 CTC-GAGAAA-TCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAA-ACA-ATTTTGGTCTTT
* * *
24709858 GAACTAAAAACTTATTTACGTCAGAATTGTTTCTCTC-T-GTTCTTGGAC
62 GAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
24709906 GAACTTCTGA
Statistics
Matches: 759, Mismatches: 147, Indels: 95
0.76 0.15 0.09
Matches are distributed among these distances:
195 62 0.08
196 35 0.05
197 24 0.03
198 29 0.04
199 5 0.01
200 1 0.00
201 2 0.00
203 1 0.00
204 1 0.00
205 2 0.00
207 2 0.00
208 1 0.00
209 1 0.00
211 2 0.00
212 8 0.01
213 14 0.02
214 123 0.16
215 94 0.12
216 287 0.38
217 65 0.09
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
CTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAATTTTGGTCTTTGAAT
TAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGCCAA
ACAATAACAAGTTCCTTTATAACTTTCGTTCCTTAAAGTATTAAAGACGATCCAGTCCTACGACC
AATTTTCCGAACATTCCATG
Found at i:24709211 original size:559 final size:547
Alignment explanation
Indices: 24708194--24709239 Score: 1278
Period size: 559 Copynumber: 1.9 Consensus size: 547
24708184 TCCATGCTCG
* * *
24708194 GGAAATCATAACATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTTAAATTAA
1 GGAAATCATAACATTCGGTCTAAATAGTTTTTAATTTTGTAAACAAATTTTGGTCTTTAAATTAA
** * *
24708259 AACTTATTTATTGTTTCTCTCTTGGTTCTTGGATGAACATCAGAACTTGTCAAACATTCACGAGT
66 AACTTATTTATTGTTTCTCTCTTGGTTCTTGGACAAACATCAGAACTTGCCAAACATTCACAAGT
* * * * *
24708324 TCTTTTATAACTTCGATTCTTAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCTGAACA
131 TCTTTTATAACTTCGATTCTTAAAGTATTAAAGACGATCCAGTCCTTCGACCAATTTTCCGAACA
* * * * *
24708389 TAACGTGCTCGGGAAATTGCATCCTTTGGTCTAAATGGTTTACAATTTGTAAACAACTTTTGGTC
196 TAACATGCTCGAGAAATCGCATCATTTGGTCTAAATGCTTTACAATTTGTAAACAACTTTTGGTC
* * * * *
24708454 TTTAAATTAGAAACTTATTTCCGTGAGAATAGTTTCTCTCTTTGTTCTTGGACAAACTTTCAAAC
261 TTTAAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACAAACATCCAAAC
* * * * *
24708519 TTGTCAAACATTTACTAGTTCTTTTATAACTTTGATTCCTGAGAGTATTCAAGACGATCCATTCC
326 TTGTCAAACAATAACGAGTTCTGTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCC
**
24708584 TTAGACAAATTTTATGAACATTCCATGCTCGGAAAATCGTATCATTAAGTCTAAATAGTTTTTAA
391 TTAGACAAATTTTATGAACATTCCATGCTCGGAAAATCACATCATTAAGTCTAAATAGTTTTTAA
*
24708649 TTTTGTAAACAAATTTTGGTCTTTAAATAAAATATAATTCACGTAATAAATAGTTTTTAGACGTT
456 TTTTATAAAC-AATTTTGGTCTTTAAATAAAATATAATTCACGTAATAAATAGTTTTTAGACGTT
24708714 CCATTCCTTCAACCAATTTTAAAACCTC
520 CCATTCCTTCAACCAATTTTAAAACCTC
* *
24708742 GGAAATCA-AATCATTCGTTCTAAATAGTTTTTAATTTTGTAAACAAATTTTGGTCTTTGAATTA
1 GGAAATCATAA-CATTCGGTCTAAATAGTTTTTAATTTTGTAAACAAATTTTGGTCTTTAAATT-
**
24708806 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAATTTTCA-AACTTGCCAAA
64 AAAACTTA-TT---T----ATTGTTTCTCTCTTGGTTCTTGGACAAA-CATCAGAACTTGCCAAA
* * * * * ** **
24708870 CTTTTACAAGTTCCTTTT-TAACTTTGGTTCCTTAAAGTATTAAAGGCGATTTAGTCCTTCGAGT
120 CATTCACAAGTT-CTTTTATAACTTCGATT-CTTAAAGTATTAAAGACGATCCAGTCCTTCGACC
** *
24708934 AATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGCTTGT-CATTTTGT
183 AATTTTCCGAACATAACATGCTCGAGAAATCGCATCATTTGGTCTAAAT-GCTT-TACAATTTGT
* * *
24708998 AAA-AAGCTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTT
246 AAACAA-CTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTT
** * * * * * *
24709062 GGACTTACATCCGAACTTGTGAAACAATAACGAGTTCTGTTATAACTTCGTTTCTTGATAGTGTT
310 GGACAAACATCCAAACTTGTCAAACAATAACGAGTTCTGTTATAACTTCGATTCCTGAGAGTATT
* * * * * * **
24709127 CATGATGATCCATTCC-TACGACCAATTTTCTGAGCATTCCATGCTCGGGAAATCACATCATTTG
375 CAAGACGATCCATTCCTTA-GACAAATTTTATGAACATTCCATGCTCGGAAAATCACATCATTAA
*
24709191 GTCTAAATA-TTTTGTAATTTTATAAACAATTTTGGTCTTTAAATTAAAT
439 GTCTAAATAGTTTT-TAATTTTATAAACAATTTTGGTCTTTAAATAAAAT
24709240 TTTTTTTTCG
Statistics
Matches: 414, Mismatches: 66, Indels: 26
0.82 0.13 0.05
Matches are distributed among these distances:
547 2 0.00
548 55 0.13
549 8 0.02
550 2 0.00
553 1 0.00
557 54 0.13
558 104 0.25
559 187 0.45
560 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (547 bp):
GGAAATCATAACATTCGGTCTAAATAGTTTTTAATTTTGTAAACAAATTTTGGTCTTTAAATTAA
AACTTATTTATTGTTTCTCTCTTGGTTCTTGGACAAACATCAGAACTTGCCAAACATTCACAAGT
TCTTTTATAACTTCGATTCTTAAAGTATTAAAGACGATCCAGTCCTTCGACCAATTTTCCGAACA
TAACATGCTCGAGAAATCGCATCATTTGGTCTAAATGCTTTACAATTTGTAAACAACTTTTGGTC
TTTAAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACAAACATCCAAAC
TTGTCAAACAATAACGAGTTCTGTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCC
TTAGACAAATTTTATGAACATTCCATGCTCGGAAAATCACATCATTAAGTCTAAATAGTTTTTAA
TTTTATAAACAATTTTGGTCTTTAAATAAAATATAATTCACGTAATAAATAGTTTTTAGACGTTC
CATTCCTTCAACCAATTTTAAAACCTC
Found at i:24709749 original size:412 final size:411
Alignment explanation
Indices: 24708935--24709758 Score: 941
Period size: 412 Copynumber: 2.0 Consensus size: 411
24708925 CCTTCGAGTA
*
24708935 ATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGCTTGTCATTTTGTAA
1 ATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGCTTGTAATTTTGTAA
* * * * **
24709000 AAAGCTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
66 AAAACTTTTAGCCTTTGAATTAAAAACTTATTCACATGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * * * * * * *
24709065 CTTACATCCGAACTTGTGAAACAATAACGAGTTCTGTTATAACTTCGTTTCTTGATAGTGTTCAT
131 CTGACATCAGAACTTGTCAAACAATAACAAGTTCTGTTATAACTTCGGTTCTTGAAAGTATTAAA
* * * * *
24709130 GATGATCCATTCCTACGACCAATTTTCTGAGCATTCCATGCTCGGGAAATCACATCATTTGGTCT
196 CACGATCCATTCCTACAACCAATTTTCTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCT
* * * ** * * *
24709195 AAATATTTTGTAATTTTATAAACAATTTTGGTCTTTAAATTAAATTTTTTTTTCGTGAGAATAGT
261 AAATAGTTTGTAATTTTATAAAAAACTTTGGTCTTTAAATTAAACCTATTTATCGTAAGAATAGT
* ** *
24709260 TTCTCTCTTGGTTCTTAGAGACGAACTTCCAAACTTGTTAAACATTTACAAGTTCTTTTATACTT
326 TTCTCACTTGGTTCTTAGAGACGAACTTCCAAACTTGCCAAACATTTACAAGTTCTTTCATACTT
** *
24709325 CGGTTGCTGAGAGTATTCAAG
391 CAATTCCTGAGAGTATTCAAG
* * * *
24709346 ATTTTCTGAACATTCCATGCTCGAGAAATCGCTTCA-TTGAGTCTAAATAGTTTTTAATTTTGTA
1 ATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTG-GTCTAAATAGCTTGTAATTTTGTA
24709410 AAAATACTTTTAGCCTTTGAATTAAAAA-TTGATTCACATGAGAATTGTTTCTCTCTTGGTTCTT
65 AAAA-ACTTTTAGCCTTTGAATTAAAAACTT-ATTCACATGAGAATTGTTTCTCTCTTGGTTCTT
** * *
24709474 GGA-TGA-ATTTCAGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATT-AAAGT
128 GGACTGACA--TCAGAACTTGTCAAACAATAACAAGTTCTGTTATAACTTCGGTTC-TTGAAAGT
* * **
24709536 ATTAAACACGATCCATTCCTCCAAGCAATTTT-TCGAACATTCCATGCTCGAGAAATTGCATCAT
190 ATTAAACACGATCCATTCCTACAACCAATTTTCT-GAACATTCCATGCTCGAGAAATCACATCAT
* * * * *
24709600 TTGGTTTTAATAGTTTGTCATTTTGTAAAAAACCTTTGGTCTTTGAATTAAAAACCTATTTAT-G
254 TTGGTCTAAATAGTTTGTAATTTTATAAAAAA-CTTTGGTCTTTAAATT--AAACCTATTTATCG
* * * * *
24709664 TAAGAATTGTTTCTGACTTGGTT-TTTGA-ATGAACTTCC-AACTTGCCAAACATTTA-AGTGTT
316 TAAGAATAGTTTCTCACTTGGTTCTTAGAGACGAACTTCCAAACTTGCCAAACATTTACA-AGTT
24709725 CTTTCATAACTTCAATTCCTGAGAGTATTCAAG
380 CTTTCAT-ACTTCAATTCCTGAGAGTATTCAAG
24709758 A
1 A
24709759 CGATCCATTC
Statistics
Matches: 343, Mismatches: 58, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
410 5 0.01
411 88 0.26
412 202 0.59
413 20 0.06
414 20 0.06
415 8 0.02
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (411 bp):
ATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGCTTGTAATTTTGTAA
AAAACTTTTAGCCTTTGAATTAAAAACTTATTCACATGAGAATTGTTTCTCTCTTGGTTCTTGGA
CTGACATCAGAACTTGTCAAACAATAACAAGTTCTGTTATAACTTCGGTTCTTGAAAGTATTAAA
CACGATCCATTCCTACAACCAATTTTCTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCT
AAATAGTTTGTAATTTTATAAAAAACTTTGGTCTTTAAATTAAACCTATTTATCGTAAGAATAGT
TTCTCACTTGGTTCTTAGAGACGAACTTCCAAACTTGCCAAACATTTACAAGTTCTTTCATACTT
CAATTCCTGAGAGTATTCAAG
Found at i:24709828 original size:214 final size:215
Alignment explanation
Indices: 24709346--24709892 Score: 618
Period size: 214 Copynumber: 2.5 Consensus size: 215
24709336 AGTATTCAAG
* * * *
24709346 ATTTTCTGAACATTCCATGCTCGAGAAATCGCTTCA-TTGAGTCTAAATAGTTTTTAATTTTGTA
1 ATTTTC-GAACATTCCATGCTCGAGAAATTGCATCATTTG-GTCTAAATAGTTTGTCATTTTGTA
* * * * *
24709410 AAAATACTTTTAGCCTTTGAATTAAAAA-TTGATTCACATGAGAATTGTTTCTCTCTTGGTTCTT
64 AAAA-ACTTTTAGTCTTTGAATTAAAAACTT-ATTTACGTAAGAATTGTTTCTCACTTGGTTCTT
* * * * * * ** *
24709474 GGATGAATTTCAGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATT
127 GAATGAACTTCACAACTTGCCAAACATTTACAAGTTCTTTCATAACTTCAATTCATGAAAGTATT
*
24709539 AAACACGATCCATTCCTCCAAGCA
192 AAACACGATCCATTCCTCCAACCA
* *
24709563 ATTTTTCGAACATTCCATGCTCGAGAAATTGCATCATTTGGTTTTAATAGTTTGTCATTTTGTAA
1 A-TTTTCGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * *
24709628 AAAACCTTTGGTCTTTGAATTAAAAACCTATTTATGTAAGAATTGTTTCTGACTTGGTTTTTGAA
65 AAAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCACTTGGTTCTTGAA
* * * *
24709693 TGAACTTC-CAACTTGCCAAACATTTA-AGTGTTCTTTCATAACTTCAATTCCTGAGAGTATTCA
130 TGAACTTCACAACTTGCCAAACATTTACA-AGTTCTTTCATAACTTCAATTCATGAAAGTATTAA
* * *
24709756 AGACGATCCATTCCTTCGACCA
194 ACACGATCCATTCCTCCAACCA
* *
24709778 ATTTTCGAACATTCCATTCTCTG-GAAATTGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
1 ATTTTCGAACATTCCATGCTC-GAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * *
24709842 TAAGCTTTTAATCTATGAACTAAAAACTTATTTACGTCAGAATTGTTTCTC
65 AAAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTC
24709893 TCTGTTCTTG
Statistics
Matches: 276, Mismatches: 49, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
214 98 0.36
215 62 0.22
216 55 0.20
217 53 0.19
218 8 0.03
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (215 bp):
ATTTTCGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
AAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCACTTGGTTCTTGAAT
GAACTTCACAACTTGCCAAACATTTACAAGTTCTTTCATAACTTCAATTCATGAAAGTATTAAAC
ACGATCCATTCCTCCAACCA
Found at i:24710023 original size:90 final size:88
Alignment explanation
Indices: 24709868--24710031 Score: 233
Period size: 90 Copynumber: 1.8 Consensus size: 88
24709858 GAACTAAAAA
*
24709868 CTTATTTACGTCAGAATTGTTTCTCTCTGTTCTTGGACGAACTTCTGAACTGGTCAAAATGTTAC
1 CTTATTTACGTCAGAATTGTTTCTCTCTGTTCTTGGACGAACTTCTGAACTGCTCAAAATGTTAC
24709933 GAGTTCTTTTATAACATCGGTTC
66 GAGTTCTTTTATAACATCGGTTC
* * * *
24709956 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA-TTTTCGAACTTCTCAAACAT-
1 CTTATTTACGTCAGAATTGTTTCTCTC-T-GTTCTTGGACGAACTTCT-GAACTGCTCAAA-ATG
24710019 TTACGAGTTCTTT
62 TTACGAGTTCTTT
24710032 GTAACTTTGA
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
88 26 0.39
89 4 0.06
90 35 0.52
91 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.43
Consensus pattern (88 bp):
CTTATTTACGTCAGAATTGTTTCTCTCTGTTCTTGGACGAACTTCTGAACTGCTCAAAATGTTAC
GAGTTCTTTTATAACATCGGTTC
Found at i:24710807 original size:216 final size:215
Alignment explanation
Indices: 24709956--24715636 Score: 5492
Period size: 216 Copynumber: 26.4 Consensus size: 215
24709946 ACATCGGTTC
* * * *
24709956 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAATTTTCGAACTTCTCAAACATTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
* * *
24710021 ACGAGTTC-TTTGTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATT-TTATCGAG-AGATT
66 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCA-ATT
* * * *
24710083 TTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTTTAAATTGTTTTTTCATTTTGTAAAC
129 TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAAC
* **
24710148 AACGTTTGGTCTTTGAAAGAAAAA
193 AACTTTTGGTCTTT-AATTAAAAA
* * * * * *
24710172 CTTATTTACATGAGAATTGTTTCTCTCTTGTTTTCATGG-CTGAACATCAGAACTTGTCAAACTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGAC-GAACTTCCGAACTTGTCAAACAT
* * * *
24710236 TTACGAGTTCTTTTATAACTTCGGTTTCTTAAAGTACTCAAGACTATATCCATTCCTTCGAG-AC
64 TTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC--GATCCATTCCTTCGAGCA-
* * * *
24710300 A-TTTTCTGTACATTCCATGCTCGGGAAATCAG-ACCATTTGGTTTAAATAGTTTGTCACTTTGT
126 ATTTTTC-GAACATTCCATGCTCGGGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
24710363 AAACAACTTATGGTCTTTGAAATAAAAA
189 AAACAACTTTTGGTCTTT-AATTAAAAA
* ** * * * *
24710391 GTTATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGCCGAACTTTCGAACTTGTCAAAC-TCT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACAT-T
* * * * * *
24710455 TACGAGTTCTTTTATGACTTCGATTCCTTAAAGTAGTCAATACTATATCCATTCATTTGAGCAA-
65 TACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC--GATCCATTCCTTCGAGCAAT
* * * * * *
24710519 TTTTCTGAACATTCCATTCTTGGGAAATCGTACCATTTGGTCCAAATAGTGTGTCATTTTGTAAA
128 TTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
24710584 CAACTTTTGGTCTTTAAGTTAAAAA
192 CAACTTTTGGTCTTTAA-TTAAAAA
* * * * * **
24710609 CTAATTTACGTAAGAATTTTTTGTCTCTTGGTTCTTAGACGAACTTTTGAACTTGTCAAACATTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
** * * ** * * *
24710674 AAAAGTTCTTTTTTAACTACGATTCCAGAGAGTATTCAAGAC-AACCTATTCCTTCGACCAATTT
66 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCC-ATTCCTTCGAGCAATTT
* * *
24710738 TACGAACATTCCATGCTCAGGAAATCGCATCGTTTGGTCTAAATAGTTTGTCATTTTGTAATA-A
130 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACA
*
24710802 ACTTTTTGTCTTTGAATTAAAAA
194 ACTTTTGGTCTTT-AATTAAAAA
* * * * * * * *
24710825 --TATTTTCATGAGAATTATTTCTCTCTTGGTTCTTGGTA-GAAGTTCTGAACTTGTTATACTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAACTTCCGAACTTGTCAAACATT
* ** * * * *
24710887 TATGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGACGATCCAGTCCTTTGAGCTACTT
65 TACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * * *
24710952 TCCGAGCATTCCATGCGCGGGAAATCGCATCATTTGGTTTAAATAGTTTGTCTTTTTGTATAA-A
130 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACA
24711016 ACTTTTGGTCTTTAAATTAAAAA
194 ACTTTTGGTCTTT-AATTAAAAA
** * * ** *
24711039 CTTATTTACGTGAGAATTGTTTCTCTCTAAGTTCTTTGATGAAACTTCTAAACTTGTTAAACATT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTCCGAACTTGTCAAACATT
* * * * *
24711104 TAAGAGTTCTTTTATAGCTTCGGTTCCTGAAAGTATTCATGACGATCCATTCCTTCG-GCCAATT
65 TACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-CAATT
* * * * * * * * *
24711168 TTTTGAA-ATGCCATGCTCGAGAAATTGCATCGTTTGGTTTAAGTAGTTTCTCATTTTCTAATA-
129 TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-AC
* * *
24711231 AACTTTTTGTCTATGAATTAGAAA
193 AACTTTTGGTCT-TTAATTAAAAA
* * * *
24711255 C--ATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGTA-GAACTTCCGAACTTGTTATACTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAACTTCCGAACTTGTCAAACATT
* * * * * * *
24711317 TATGAGTTCTTTTGA-AACTTCGGTTCGTTAAAGTATTCAAGACGAACAATTCTTTCGAGCAATC
65 TACGAGTTCTTTT-ATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * * *
24711381 TTCCGAACATTCCGA-GCTAGGGAAATTGCATCATTTGGCCTAAATAGTTTGTTATTTTGTGAAT
129 TTTCGAACATTCC-ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
*
24711445 AACTTTTGGTGTTTAAATTAAAAA
193 AACTTTTGGTCTTT-AATTAAAAA
** * * * * * * **
24711469 CTTATTTATATGACAATTATTTCTATCTTCGTTCTTGGACTAACATCTAAACTTGTCAAACATTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
* * * * *
24711534 ACGAGTTCTTTTATAACTTCGATT-CTTGAGAGTATTCACGATGATCCTTTCCTTCGATCAA-TT
66 ACGAGTTCTTTTATAACTTCGATTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * * *
24711597 TTCTAAACAATCCATGCTCGGGACATCGCATCATTTGGTCTAATTAGTATGTCATTTTGTAAACA
130 TTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
*
24711662 ACTTTTGGTCCTTGAATTAAAAA
194 ACTTTTGGT-CTTTAATTAAAAA
* * * * ** * *
24711685 CTTATTTACGTGAGAATTGTTTCTCTCTTAGTCCTTGGGCTAACTTCTTAACTTATCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
* * * * * * *
24711750 ACGATTTCTTTTACAACTTCAATT-CTTCTAAGTATTCAAGACGATCCATTCATTTGAACAATTT
66 ACGAGTTCTTTTATAACTTCGATTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* *
24711814 TCCGAACATTCCATGCTCGGG-AATCGCATCATCTGGTCTAAATAGTTTGTCATTTTGTAAACAA
130 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
24711878 CTTTTGGTCTTTAAATTAAAAA
195 CTTTTGGTCTTT-AATTAAAAA
* * * * * * *
24711900 CTTA-TTCCTGTGAGAATTGTTTGTCTCTTGGTTCTTGAACAAACTTTCGAACTAGTCAAACATA
1 CTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATT
* * * * *
24711964 TACGAGTTCTTTTATAACTTTGGTT-CTTGAGAGCATTCAAGACGATCCATTCCTTCGACCAA-T
65 TACGAGTTCTTTTATAACTTCGATTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
** * *
24712027 TTTCTGAACATTCCATGCTCGAAAAATCGTATCA-TTGGCTCTAAATAGTTCT-TAATTTTGTAA
129 TTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGG-TCTAAATAGTT-TGTCATTTTGTAA
24712090 ACAACTTTTGGTCTTTGAATTAAAAA
191 ACAACTTTTGGTCTTT-AATTAAAAA
** * * ** * * * ** * * * *
24712116 CCGATTCACGTGAGAATTGTTTCACTCTTTATACTAGGACGAATTTCAAAACATATGAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
*
24712181 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * *
24712246 TCGAGCATTCCATGCTCGGGTAATCGCATCATTGGGAT-TTAATAGTTTGTCATTTTGTAAA-AA
131 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGG-TCTAAATAGTTTGTCATTTTGTAAACAA
* *
24712309 ATATTTCGTCTTTGAATTAAAAA
195 CT-TTTGGTCTTT-AATTAAAAA
* * * * * * * *
24712332 CTTATTTATGTGATAATT-TATTTTCTCTCGGTTCTTGAACAAACTTCCGATCATGTCAAACATT
1 CTTATTTACGTGAGAATTGT-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATT
* * * *
24712396 TATGAGTTCTTTTATAACTTCGATT-CTTGAGAGTTTTCAAGACGATCCATTCCTTCGACCAATT
65 TACGAGTTCTTTTATAACTTCGATTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* *** * * * * *
24712460 TTTCGAACATTCCTTGCTCCAAAAATCTCATAATTTGATTTAAATAGTTTTTCCA-TTTGTAATA
129 TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAA-A
*
24712524 -AACTTTTTGTCTTTGAATTAAAAA
192 CAACTTTTGGTCTTT-AATTAAAAA
* * * * * *
24712548 C--ATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CAGAACTTTCGAATTTGTTATACTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACATT
* * * * * * *
24712610 TATGAGTTCTTTTATAACTTC-AGTTTCTGAGAGTA-TCAAGATGATCCATTCCTTCGAGCTAGT
65 TACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* *
24712673 TTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
129 TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
24712738 ACTTTTGGTCTTTAAATTAAAAA
194 ACTTTTGGTCTTT-AATTAAAAA
* * *
24712761 CTTA-TT---T----ATTGTTTCTCTCTTGGTTCTTGGATGAACATCAGAACTTGTCAAACATTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
* * * * *
24712818 ACGAGTTCTTTTATGACTTCGATTCTTTAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTT
66 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* *
24712883 CCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAAC
131 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * *
24712948 TTTTAGTCATTAAATTAGAAA
196 TTTTGGTC-TTTAATTAAAAA
* * * *
24712969 CTTATTT-CTGTGAGAATAGTTTCTCTCTT-GTTCTTGGATGAACTTTCGAACTTGTCACACATT
1 CTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATT
* * ** * *
24713032 TACGAGTTCTTTTATAACTTCAATT-CTTGAGAGTATTCAAGATAATCCATTCCTTAGACCAA-T
65 TACGAGTTCTTTTATAACTTCGATTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * *
24713095 TTTCTGAACATTCCATGCTCAGGAAATCGCATCA-TTGAGTCTAAATAGTTTTTAATTTTGTAAA
129 TTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTG-GTCTAAATAGTTTGTCATTTTGTAAA
* ** *
24713159 AAAAATTTGGTCTTTAAATAAAAA
192 CAACTTTTGGTCTTTAATTAAAAA
* * * * * ** *
24713183 -TATAATTCATGTGAGAATTGATTT-TCTCTTGGTTGTTGGATGAATTTCAAAACTTGTCAAACT
1 CT-T-ATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACA
* * * * *
24713246 TTTACGAGTTCTTTTTATAAATACGATTTCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGAAA
63 TTTACGAGTTC-TTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * *
24713311 TTTTT-GAACATTCCATGCTCGTGAAATCGCTTCATTTGCTTTTAATAGTTTTTCATTTTGTAAA
127 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
24713375 AAACTTTTGGTCCTTGAATTAAAAA
192 CAACTTTTGGT-CTTTAATTAAAAA
* * * * * *
24713400 CTTATTTATGTGAGGATT-TTCTCTCTCCTT-GTTCTTGAACGAACTTTCGGACTTTTCAAACAT
1 CTTATTTACGTGAGAATTGTT-TCTCT-CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACAT
* * *
24713463 TTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCCTT-GA-CGAA
64 TTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT-CCTTCGAGC-AA
* * ** *
24713526 TTTTTCGAACGTTCCTTGCTCGAAAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAA
127 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
24713591 CAACTTTTGGTCTTTGAATTAAAAA
192 CAACTTTTGGTCTTT-AATTAAAAA
* * * * * * * *
24713616 GTTACTTAAC-TGAGAACTATTTCTCCCTTGCTTTTTGGCCGAACTTCCGAACTTGTCAAAC-TC
1 CTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACAT-
* * * *
24713679 TTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAAGACTATATCCATTCATTCGAGAAA
64 TTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC--GATCCATTCCTTCGAGCAA
* * * * *
24713744 TTTTTTGAATATTCCATGCTCGGGAAATCGAACCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
127 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
24713809 CAACTTTTGGTGTTTGAATT-AAAA
192 CAACTTTTGGTCTTT-AATTAAAAA
* * * ** * * * *
24713833 CTAATTTACATGAGAATTATTTCTCTCTTTCTTCTAGGTCGAACTTCCAAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
* * * * **
24713898 ACGAGTTCTTTTATAAGTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTTTAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * *
24713963 TCAAACATTTCATACTCCGAAAATTGCATCATTTAGTCTAAA-AGGTTTGTCATTTTGTAAACAA
131 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAA
*
24714027 CTTTTAGTCTTTAAATTAAAAA
195 CTTTTGGTCTTT-AATTAAAAA
* * * * *
24714049 CTTATTTATGTGAGAA-TGTCTTCTCTCTTGGTTCTTGGACTAACTTCCGTAGTTGTCAAACTTT
1 CTTATTTACGTGAGAATTGT-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATT
* * * **
24714113 TACGCGTTC--TTATAACTTC-AGTTGCTTAAAGTACTCAAGAATATCCATTCCTTCGAGCAATT
65 TACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * **
24714175 TTCCGAACATTCCATGCTCGAGAAATCACACCAATTGGTAAAAATAGTTTGTCATTTTGTAAACA
129 TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
24714240 ACTTTTGGTCTTTAAATTAAAAA
194 ACTTTTGGTCTTT-AATTAAAAA
* * * * * * * *
24714263 CTAAGTTACATGAGAATTTTTTGTCTATTAGTTCTTGGACGAACTTCCGAACAT-TCAAACATTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
* * * ** * *
24714327 AAGAGTTCTTTTAGAAATTCGGCT-CTTGAGAA-TATTTAAGACGATCCATTCCTTCGACCAA-T
66 ACGAGTTCTTTTATAACTTCGATTCCTT-A-AAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * *
24714389 TTACTAACATTCCATGCTCGAGAAATTGCATCGTTTGATCTAAATAGTTTGTCATTTTGTAATA-
129 TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-AC
* *
24714453 AACTTTTTGTCTTTGAATTAAAAT
193 AACTTTTGGTCTTT-AATTAAAAA
** * * * * *
24714477 CTTATTTAAATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAATTTTCGAACATGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
* * *
24714542 ACGAGTTCTTTTATAACTTCTG-TTCCTTATAGTATTCAAGACGATCCATTCATTCGAGTAATTT
66 ACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
*
24714606 TTCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTG-AAACAA
130 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
24714670 CTTTTGGTCTTTAAAATAAAAA
195 CTTTTGGTCTTT-AATTAAAAA
* * * ** * * *
24714692 CTTATTTACGTAAGAATTGTTTCTCTCTT-GTTCTGGGATGAAGATCCAAACTTGTTAAGCATTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
* * * * * * **
24714756 ACGAGTTCTTATATAACTTTGGTTCCTTAAAGTTTTCAACATGATCCATTCCTTTAAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
24714821 TTGAACATTCCATGCATTGGG-AATCGCATCTTTTGGTCTAAATAGTTTGT-ATTTCT-TAAACA
131 TCGAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT-TGTAAACA
* *
24714883 ACATTTGCAT-TTTGAATTAAAAA
194 ACTTTTG-GTCTTT-AATTAAAAA
* * * * ** * ** *
24714906 C-TATTTTATGTGACAATTGTTTTTCACTTTATTCTTGGACAAACTTTTGAACTTCTCAAACATT
1 CTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATT
* * * * * * *
24714970 TAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATCCAAGACGATCCATTCCTTCAACCAATTT
65 TACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * * * * * *
24715035 TCCAAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAGTAATTTGCCATTTTGTAATCAA
130 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
24715100 CTTTTTGTCTTTAAATTAAAAA
195 CTTTTGGTCTTT-AATTAAAAA
* * *
24715122 CTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
* * * *
24715187 ACGAGTTCTTTTATAAGTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-TCCATTTT
66 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * *
24715251 GT-GAACATTGCACGCTCGGGAAATCGCATCATTTCGTCTAAATAGTTTGTAATTTTGTAAACAA
131 -TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * *
24715315 CTATTCGTATTTGAATTACAAA
195 CTTTTGGTCTTT-AATTAAAAA
* * ** ** *
24715337 CTTATTTACGTGAGAATTGTTTCACTCTTGGATCTTTCAC-AGACTTCTAAACTTATCAAACATT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA-ACTTCCGAACTTGTCAAACATT
* * * * *
24715401 TACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTGAGGATGATCCATTCCTTTGAGTAATTT
65 TACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * *
24715465 TTCGAACATTCCCTGC-CCGGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAACAG
130 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
24715529 CTTTTGGTCTTTGAATTAAAAA
195 CTTTTGGTCTTT-AATTAAAAA
* * * * *
24715551 CTTGTTGACGTGAGAATTGTTTCTCTCTTGGTTATTGGCCAAACTTCCGAACTTGTCAAACATTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
* * *
24715616 AAGAGTGCTTTTAGAACTTCG
66 ACGAGTTCTTTTATAACTTCG
24715637 GTTCTAGAGT
Statistics
Matches: 4491, Mismatches: 827, Indels: 296
0.80 0.15 0.05
Matches are distributed among these distances:
207 68 0.02
208 110 0.02
209 4 0.00
211 1 0.00
212 4 0.00
213 199 0.04
214 976 0.22
215 931 0.21
216 1410 0.31
217 303 0.07
218 361 0.08
219 70 0.02
220 52 0.01
221 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTT
ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
TTTTGGTCTTTAATTAAAAA
Found at i:24711028 original size:430 final size:430
Alignment explanation
Indices: 24709958--24715636 Score: 5499
Period size: 430 Copynumber: 13.2 Consensus size: 430
24709948 ATCGGTTCCT
* * * *
24709958 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA-TTTTCGAACTTCTCAAACATTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTA
* *
24710022 CGAGTTC-TTTGTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATT--TTATCGAG-AGATT
65 CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTT-T-GAGCA-ATT
** * * *
24710083 TTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTTTAAATTGTTTTTTCATTTTGTAAAC
127 TTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAAC
* ** * * *
24710148 AACGTTTGGTCTTTGAAAGAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGTTTTCATGG-C
191 AACTTTTGGTCTTT-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGAC
* * * * * *
24710212 TGAACATCAGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTTCTTAAAGTACTCAA
254 -GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAA
* * * *
24710277 GACTATATCCATTCCTTCGA-GACA-TTTTCTGTACATTCCATGCTCGGGAAATCAG-ACCATTT
318 GAC--GATCCATTCCTTCGACCA-ATTTTTC-GAACATTCCATGCTCGGGAAATC-GCATCATTT
* * * * *
24710339 GGTTTAAATAGTTTGTCACTTTGTAAACAACTTATGGTCTTTGAAATAAAAAGT
378 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-C
** * * * *
24710393 TATTTAAATGAGAATTGTTTCTCCCTTGCTTCTTGGCCGAACTT-TCGAACTTGTCAAACTCTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTA
* * * * *
24710457 CGAGTTCTTTTATGACTTCGATTCCTTAAAGTAGTCAATACTATATCCATTCATTTGAGCAATTT
65 CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC--GATCCATTCCTTTGAGCAATTT
* * * * * * *
24710522 TCTGAACATTCCATTCTTGGGAAATCGTACCATTTGGTCCAAATAGTGTGTCATTTTGTAAACAA
128 TCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * *
24710587 CTTTTGGTCTTTAAGTTAAAAACTAATTTACGTAAGAATTTTTTGTCTCTTGGTTCTTAGACGAA
193 CTTTTGGTCTTTAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* ** * * ** *
24710652 CTTTTGAACTTGTCAAACATTTAAAAGTTCTTTTTTAACTACGATTCCAGAGAGTATTCAAGAC-
257 CTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
* * * *
24710716 AACCTATTCCTTCGACCAATTTTACGAACATTCCATGCTCAGGAAATCGCATCGTTTGGTCTAAA
322 ATCC-ATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
*
24710781 TAGTTTGTCATTTTGTAATA-AACTTTTTGTCTTTGAATTAAAAA-
386 TAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAAC
* * * * * *
24710825 TATTTTCATGAGAATTATTTCTCTCTTGGTTCTTGGTA-GAAGTTCTGAACTTGTTATACTTTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAACTTCTGAACTTGTCAAACTTTTA
* ** * * *
24710889 TGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGACGATCCAGTCCTTTGAGCTACTTTC
65 CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTC
* * * *
24710954 CGAGCATTCCATGCGCGGGAAATCGCATCATTTGGTTTAAATAGTTTGTCTTTTTGTATAA-AAC
130 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAAC
** * *
24711018 TTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTAAGTTCTTTGATGAAA
194 TTTTGGTCTTT-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AA
* * * * * * *
24711083 CTTCTAAACTTGTTAAACATTTAAGAGTTCTTTTATAGCTTCGGTTCCTGAAAGTATTCATGACG
257 CTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
* * * * * * * *
24711148 ATCCATTCCTTCGGCCAATTTTTTGAA-ATGCCATGCTCGAGAAATTGCATCGTTTGGTTTAAGT
322 ATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * * *
24711212 AGTTTCTCATTTTCTAATA-AACTTTTTGTCTATGAATTAGAAAC
387 AGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAAC
* * * *
24711256 -ATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGTA-GAACTTCCGAACTTGTTATACTTTTA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAACTTCTGAACTTGTCAAACTTTTA
* * * * * *
24711319 TGAGTTCTTTTGA-AACTTCGGTTCGTTAAAGTATTCAAGACGAACAATT-CTTTCGAGCAATCT
65 CGAGTTCTTTT-ATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GAGCAATTT
* * * * * *
24711382 TCCGAACATTCCGA-GCTAGGGAAATTGCATCATTTGGCCTAAATAGTTTGTTATTTTGTGAATA
128 TCCGAACATTCC-ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* ** * * * * *
24711446 ACTTTTGGTGTTTAAATTAAAAACTTATTTATATGACAATTATTTCTATCTTCGTTCTTGGACTA
192 ACTTTTGGTCTTT-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * *
24711511 ACATCTAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATT-CTTGAGAGTATTCACGA
256 ACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTT-AAAGTATTCAAGA
* * * * * *
24711575 TGATCCTTTCCTTCGATCAA-TTTTCTAAACAATCCATGCTCGGGACATCGCATCATTTGGTCTA
320 CGATCCATTCCTTCGACCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
* * *
24711639 ATTAGTATGTCATTTTGTAAACAACTTTTGGTCCTTGAATTAAAAAC
384 AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * * *
24711686 TTATTTACGTGAGAATTGTTTCTCTCTTAGTCCTTGGGCTAACTTCTTAACTTATCAAACTTTTA
1 -TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * * * *
24711751 CGATTTCTTTTACAACTTCAATT-CTTCTAAGTATTCAAGACGATCCATTCATTTGAACAATTTT
65 CGAGTTCTTTTATAACTTCGATTCCTT-AAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTT
*
24711815 CCGAACATTCCATGCTCGGG-AATCGCATCATCTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
129 CCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * *
24711879 TTTTGGTCTTTAAATTAAAAACTTA-TTCCTGTGAGAATTGTTTGTCTCTTGGTTCTTGAACAAA
194 TTTTGGTCTTT-AATTAAAAACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * * * *
24711943 CTT-TCGAACTAGTCAAACATATACGAGTTCTTTTATAACTTTGGTT-CTTGAGAGCATTCAAGA
257 CTTCT-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTT-AAAGTATTCAAGA
** *
24712006 CGATCCATTCCTTCGACCAA-TTTTCTGAACATTCCATGCTCGAAAAATCGTATCA-TTGGCTCT
320 CGATCCATTCCTTCGACCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGG-TCT
*
24712069 AAATAGTTCT-TAATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACC
383 AAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-C
* * * ** * * * ** * * *
24712118 GATTCACGTGAGAATTGTTTCACTCTTTATACTAGGACGAATTTCAAAACATATGAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTAC
* * *
24712183 GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTTC
66 GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCC
* * * * *
24712248 GAGCATTCCATGCTCGGGTAATCGCATCATTGGGAT-TTAATAGTTTGTCATTTTGTAAA-AAAT
131 GAACATTCCATGCTCGGGAAATCGCATCATTTGG-TCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * * * *
24712311 ATTTCGTCTTTGAATTAAAAACTTATTTATGTGATAATT-TATTTTCTCTCGGTTCTTGAACAAA
195 -TTTGGTCTTT-AATTAAAAACTTATTTACGTGAGAATTGT-TTCTCTCTTGGTTCTTGGACGAA
* * * * * *
24712375 CTTCCGATCATGTCAAACATTTATGAGTTCTTTTATAACTTCGATT-CTTGAGAGTTTTCAAGAC
257 CTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTT-AAAGTATTCAAGAC
* *** * * * *
24712439 GATCCATTCCTTCGACCAATTTTTCGAACATTCCTTGCTCCAAAAATCTCATAATTTGATTTAAA
321 GATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* *
24712504 TAGTTTTTCCA-TTTGTAATA-AACTTTTTGTCTTTGAATTAAAAAC
386 TAGTTTGT-CATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAAC
* * * *
24712549 -ATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CAGAACTT-TCGAATTTGTTATACTTTT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCT-GAACTTGTCAAACTTTT
* * * * * * * *
24712611 ATGAGTTCTTTTATAACTTC-AGTTTCTGAGAGTA-TCAAGATGATCCATTCCTTCGAGCTAGTT
64 ACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTT
*
24712674 TCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAA
128 TCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
24712739 CTTTTGGTCTTTAAATTAAAAACTTA-TT---T----ATTGTTTCTCTCTTGGTTCTTGGATGAA
193 CTTTTGGTCTTT-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * * * *
24712796 CATCAGAACTTGTCAAACATTTACGAGTTCTTTTATGACTTCGATTCTTTAGAGTATTCAAGATG
257 CTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
*
24712861 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
322 ATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * * *
24712926 AGTTTGTAATTTTGTAAACAACTTTTAGTCATTAAATTAGAAAC
387 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * *
24712970 TTATTT-CTGTGAGAATAGTTTCTCTCTT-GTTCTTGGATGAACTT-TCGAACTTGTCACACATT
1 -TATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTT
* * ** * *
24713032 TACGAGTTCTTTTATAACTTCAATT-CTTGAGAGTATTCAAGATAATCCATTCCTTAGACCAATT
63 TACGAGTTCTTTTATAACTTCGATTCCTT-AAAGTATTCAAGACGATCCATTCCTTTGAGCAATT
* * * * *
24713096 TTCTGAACATTCCATGCTCAGGAAATCGCATCA-TTGAGTCTAAATAGTTTTTAATTTTGTAAAA
127 TTCCGAACATTCCATGCTCGGGAAATCGCATCATTTG-GTCTAAATAGTTTGTCATTTTGTAAAC
** * * * *
24713160 AAAATTTGGTCTTTAAATAAAAA-TATAATTCATGTGAGAATTGATTT-TCTCTTGGTTGTTGGA
191 AACTTTTGGTCTTTAATTAAAAACT-T-ATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGA
* * ** * * * *
24713223 TGAATTTCAAAACTTGTCAAACTTTTACGAGTTCTTTTTATAAATACGATTTCTTAAAGTATTCA
253 CGAACTTCTGAACTTGTCAAACATTTACGAGTTC-TTTTATAACTTCGATTCCTTAAAGTATTCA
* ** * * * *
24713288 AGGCGATCCATTCCTTCGAGAAATTTTT-GAACATTCCATGCTCGTGAAATCGCTTCATTTGCTT
317 AGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * * *
24713352 TTAATAGTTTTTCATTTTGTAAAAAACTTTTGGTCCTTGAATTAAAAAC
382 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * * *
24713401 TTATTTATGTGAGGATT-TTCTCTCTCCTT-GTTCTTGAACGAACTT-TCGGACTTTTCAAACAT
1 -TATTTACGTGAGAATTGTT-TCTCT-CTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTT
* * * *
24713463 TTAAGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCCTTGA-CGAAT
62 TTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGC-AAT
* * * ** *
24713527 TTTTCGAACGTTCCTTGCTCGAAAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAAC
126 TTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * * * * *
24713592 AACTTTTGGTCTTTGAATTAAAAAGTTACTTAAC-TGAGAACTATTTCTCCCTTGCTTTTTGGCC
191 AACTTTTGGTCTTT-AATTAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* *
24713656 GAACTTCCGAACTTGTCAAAC-TCTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTACTCAA
254 GAACTTCTGAACTTGTCAAACAT-TTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAA
* * ** * * * *
24713720 GACTATATCCATTCATTCGAGAAATTTTTTGAATATTCCATGCTCGGGAAATCGAACCATTTGGT
318 GAC--GATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
* *
24713785 CAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTGTTTGAATT-AAAAC
381 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * ** * * **
24713834 TAATTTACATGAGAATTATTTCTCTCTTTCTTCTAGGTCGAACTTCCAAACTTGTCAAACTTTTA
1 T-ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * * * *
24713899 CGAGTTCTTTTATAAGTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTTTAGCAATTTTT
65 CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTC
* * * * * * *
24713964 CAAACATTTCATACTCCGAAAATTGCATCATTTAGTCTAAA-AGGTTTGTCATTTTGTAAACAAC
130 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAC
* * *
24714028 TTTTAGTCTTTAAATTAAAAACTTATTTATGTGAGAA-TGTCTTCTCTCTTGGTTCTTGGACTAA
194 TTTTGGTCTTT-AATTAAAAACTTATTTACGTGAGAATTGT-TTCTCTCTTGGTTCTTGGACGAA
* * * * * * * *
24714092 CTTCCGTAGTTGTCAAACTTTTACGCGTTC--TTATAACTTC-AGTTGCTTAAAGTACTCAAGAA
257 CTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGAC
* * * * * * * **
24714154 TATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCACACCAATTGGTAAAAA
321 GATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
*
24714219 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAC
386 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * * * * * *
24714264 TAAGTTACATGAGAATTTTTTGTCTATTAGTTCTTGGACGAACTTCCGAACAT-TCAAACATTTA
1 T-ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * ** * * *
24714328 AGAGTTCTTTTAGAAATTCGGCT-CTTGAGAA-TATTTAAGACGATCCATTCCTTCGACCAA-TT
65 CGAGTTCTTTTATAACTTCGATTCCTT-A-AAGTATTCAAGACGATCCATTCCTTTGAGCAATTT
* * * * * *
24714390 TACTAACATTCCATGCTCGAGAAATTGCATCGTTTGATCTAAATAGTTTGTCATTTTGTAATA-A
128 TCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACA
* * ** *
24714454 ACTTTTTGTCTTTGAATTAAAATCTTATTTAAATGAGAATTGTTTCTCTCTTGGTTCTTGGATGA
192 ACTTTTGGTCTTT-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * *
24714519 A-TTTTCGAACATGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTATAGTATTCAAG
256 ACTTCT-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAG
* ** *
24714582 ACGATCCATTCATTCGAGTAATTTTTCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTA
319 ACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
* *
24714647 AATAGTTTGTCATTTTG-AAACAACTTTTGGTCTTTAAAATAAAAAC
384 AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * ** ** * * *
24714693 TTATTTACGTAAGAATTGTTTCTCTCTT-GTTCTGGGATGAAGATCCAAACTTGTTAAGCATTTA
1 -TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * * * * * *
24714757 CGAGTTCTTATATAACTTTGGTTCCTTAAAGTTTTCAACATGATCCATTCCTTTAAGCAATTTTT
65 CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTC
* * *
24714822 TGAACATTCCATGCATTGGG-AATCGCATCTTTTGGTCTAAATAGTTTGT-ATTTCT-TAAACAA
130 CGAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT-TGTAAACAA
* * * * * * ** *
24714884 CATTTGCAT-TTTGAATTAAAAAC-TATTTTATGTGACAATTGTTTTTCACTTTATTCTTGGACA
193 CTTTTG-GTCTTT-AATTAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * * * * *
24714947 AACTTTTGAACTTCTCAAACATTTAAGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATCCAAGA
255 AACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * * * *
24715012 CGATCCATTCCTTCAACCAATTTTCCAAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAA
320 CGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * * * * *
24715077 GTAATTTGCCATTTTGTAATCAACTTTTTGTCTTTAAATTAAAAAC
385 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
*
24715123 TTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
1 -TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * * * *
24715188 CGAGTTCTTTTATAAGTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-TCCATTTTG
65 CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTC
* * * * *
24715252 TGAACATTGCACGCTCGGGAAATCGCATCATTTCGTCTAAATAGTTTGTAATTTTGTAAACAACT
130 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * * * **
24715317 ATTCGTATTTGAATTACAAACTTATTTACGTGAGAATTGTTTCACTCTTGGATCTTTCAC-AGAC
195 TTTGGTCTTT-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA-AC
* * * * *
24715381 TTCTAAACTTATCAAACATTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTGAGGATGA
258 TTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* ** * *
24715445 TCCATTCCTTTGAGTAATTTTTCGAACATTCCCTGC-CCGGAAATCGCATCATTTGGTCTAAATA
323 TCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* *
24715509 GTTTATCATTTTGTAAACAGCTTTTGGTCTTTGAATTAAAAAC
388 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * *
24715552 T-TGTTGACGTGAGAATTGTTTCTCTCTTGGTTATTGGCCAAACTTCCGAACTTGTCAAACATTT
1 TAT-TT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* * *
24715616 AAGAGTGCTTTTAGAACTTCG
64 ACGAGTTCTTTTATAACTTCG
24715637 GTTCTAGAGT
Statistics
Matches: 4361, Mismatches: 744, Indels: 284
0.81 0.14 0.05
Matches are distributed among these distances:
420 2 0.00
421 167 0.04
422 72 0.02
423 116 0.03
424 1 0.00
425 1 0.00
427 4 0.00
428 167 0.04
429 736 0.17
430 888 0.20
431 814 0.19
432 686 0.16
433 284 0.07
434 153 0.04
435 65 0.01
436 90 0.02
437 59 0.01
438 52 0.01
439 2 0.00
440 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (430 bp):
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTAC
GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCC
GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
TTGGTCTTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
TGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCC
ATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
Found at i:24716215 original size:216 final size:215
Alignment explanation
Indices: 24715699--24717388 Score: 1734
Period size: 216 Copynumber: 7.8 Consensus size: 215
24715689 AAGTATTTTG
* * * *
24715699 TCTCTTGGTTCTTGGAGGAAC-TCCTGAACTTGTAAAACATTTAAGAGTTCTTTTATAACTTCGG
1 TCTCTTGGTTCTTGG-CGAACTTTC-GAACTTGTTAAACATTTATGAGTTCTTTTATAACTTCGG
* * * * * *
24715763 TTCTTGAGAGTATTCAAGAAGATCTATTCCTTCGACCAATTTTACGAACATTCCATGCTCGGGAT
64 TTCCTGAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAA
* * * * ** *
24715828 ATTGCATCATTTGGTTTAAACAGTTTGTCATTTTAT-AATGAACTTTTTTTCTATGAATTAAAAA
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAT-AACTTTTGGTCTTTGAATTAAAAA
*
24715892 C--ATTTTCGTGAGAATTGTTTC
193 CTTATTTACGTGAGAATTGTTTC
* * * * * ** * *
24715913 TTTGTTAGTTCTTTGCAAAACTTTCGAACTTGTTATGCTTTTATGAGTTCTTATATAACTTCGGT
1 TCTCTTGGTTCTTGGC-GAACTTTCGAACTTGTTAAACATTTATGAGTTCTTTTATAACTTCGGT
** * *
24715978 TCCAT-AAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCCAAACATTCCAAGCTCGGGAA
65 TCC-TGAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAA
*
24716042 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAAC
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAAC
*
24716107 TTATTTACGTAAGAATTGTTTC
194 TTATTTACGTGAGAATTGTTTC
* * * *
24716129 TCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTTATACTTTTATGAGTTGTTTTATAACTTCGGC
1 TCTCTTGGTTCTTGGC-GAACTTTCGAACTTGTTAAACATTTATGAGTTCTTTTATAACTTCGGT
* * * *
24716194 TCCTGAAAGTATTCAAGACGATCCATTCATTTGAGCAATTTTCCAAACATTCCATGCTCGGGAAA
65 TCCTGAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAA
* * *
24716259 TTGCATCACTTGGTCTAAATAGTTTGTCATTTTGTATAA-AACTTTTGGTCTTTAAATTAAAAAC
130 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AATAACTTTTGGTCTTTGAATTAAAAAC
24716323 TTATTTACGTGAGAATTGTTTC
194 TTATTTACGTGAGAATTGTTTC
* * * * * * *
24716345 TCTCTAGGTTCTTGGACAAAC-TTCTAAACTTGTCAAACATTTAAGAGTTATTTTATTACTTCGG
1 TCTCTTGGTTCTTGG-CGAACTTTC-GAACTTGTTAAACATTTATGAGTTCTTTTATAACTTCGG
* * * * *
24716409 TTGCTAAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCCCGAACATTCCATGCTCAGGAA
64 TTCCTGAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAA
* * * * * *
24716474 ATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAATTTTTTGTCTTTAAAGTAAAAAA
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAA-TTAAAAA
*
24716539 CTTATTTAAGTGAGAATTGTTTC
193 CTTATTTACGTGAGAATTGTTTC
* * * * * *
24716562 ACTCTTGGTTCTTGGACAAACATCCGAACTT-TTCAAA-A-TAACGAGTTCTTTTATAACTTCGA
1 TCTCTTGGTTCTTGG-CGAACTTTCGAACTTGTT-AAACATTTATGAGTTCTTTTATAACTTCG-
* * * * * *
24716624 ATT-TTGAGAGTATTCAAGATGATCCATT-CTTACGACCAATTTTTCGAGCATTCCATGCTCGGG
63 GTTCCTGAAAGTATTCAAGACGATCCATTCCTT-CGACCAATTTTCCGAACATTCCATGCTCGGG
* * * * *
24716687 AAATCACATCATTTGGTCTAAATATTTTGTAATTTTGTAAACAACTTTTGGTCTTTAAATTAAAA
127 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAA
* * *
24716752 ATTTATTTTCGTGAGAATAGTTTC
192 ACTTATTTACGTGAGAATTGTTTC
* *
24716776 TCTCTTAGTTCTTGGACGAACTTTCGAACTTGTTATAACATTTATGATTTCTTTTATAACTTCGG
1 TCTCTTGGTTCTTGG-CGAACTTTCGAACTTGTTA-AACATTTATGAGTTCTTTTATAACTTCGG
** * * * *
24716841 TTAAT-ATGAGTATTCAAGACGATCCATTCCTTTGACCAATTTTCTGAACATTCCATGCTCGAGA
64 TTCCTGA-AAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGA
* * *
24716905 AATCTCATCA-TTGAGTCTAAATAGTCTT-TAATTTTGTAAAAATACTTTTGGTCTTTGAATTAA
128 AATCGCATCATTTG-GTCTAAATAGT-TTGTCATTTTGTAAATA-ACTTTTGGTCTTTGAATTAA
* * * * *
24716968 AAGCTGATTCACATGAGAACTGTTTC
190 AAACTTATTTACGTGAGAATTGTTTC
* * * *
24716994 TCTCTTGG-T-TTGGATGAA-TTTCAGAACTTGTCAAAC-TTTTTCTAGTTCTTTTATAACTTCG
1 TCTCTTGGTTCTTGG-CGAACTTTC-GAACTTGTTAAACATTTAT-GAGTTCTTTTATAACTTCG
* * * * ** *
24717055 GTTCGTTAAAGTATTAAACG-CGATCCATTCCTCCGAGTAATTTTTCGAACATTCCATGCTCGAG
63 GTTCCTGAAAGTATTCAA-GACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCG-G
* * * *
24717119 G-AATCGCATCATTTGGTTTTAATAGTTTGTCATTTTGTAAAAAACTTTTGGTATTTGAATTAAA
126 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAA
* **
24717183 AACCTATTTATATGAGAATTGTTTC
191 AACTTATTTACGTGAGAATTGTTTC
* * ** * * ** * *
24717208 TCACTTGGTTTTTGAATGAACTTCCAAACTTGCCAAACATTTA-AATGTTCTTTCATAACTTCGG
1 TCTCTTGGTTCTTG-GCGAACTTTCGAACTTGTTAAACATTTATGA-GTTCTTTTATAACTTCGG
* ** **
24717272 TTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATTATCGGGAA
64 TTCCTGAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAA
* * * * *
24717337 ATTGCATCATTTAGTCTACATAGTTTTTCATTTTG-CAATAAACTTTTGGTCT
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAT-AACTTTTGGTCT
24717389 AAATAGTTTG
Statistics
Matches: 1245, Mismatches: 189, Indels: 82
0.82 0.12 0.05
Matches are distributed among these distances:
214 260 0.21
215 245 0.20
216 524 0.42
217 165 0.13
218 51 0.04
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (215 bp):
TCTCTTGGTTCTTGGCGAACTTTCGAACTTGTTAAACATTTATGAGTTCTTTTATAACTTCGGTT
CCTGAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAAT
CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTT
ATTTACGTGAGAATTGTTTC
Found at i:24717370 original size:863 final size:873
Alignment explanation
Indices: 24715700--24717829 Score: 2581
Period size: 863 Copynumber: 2.4 Consensus size: 873
24715690 AGTATTTTGT
* * *
24715700 CTCTTGGTTCTTGGAGGAAC-TCCTGAACTTGTAAAACATTTAA-GAGTTCTTTTATAACTTCG-
1 CTCTTGGTTCTTGGACGAACATCC-GAACTTTTCAAA-A--TAACGAGTTCTTTTATAACTTCGA
* * * * *
24715762 GTTCTTGAGAGTATTCAAGAAGATCTATTCCTT-CGACCAATTTTACGAACATTCCATGCTCGGG
62 ATT-TTGAGAGTATTCAAGATGATCCATT-CTTACGACCAATTTTTCGAGCATTCCATGCTCGGG
* ** * * * * ** ** * *
24715826 ATATTGCATCATTTGGTTTAAACAGTTTGTCATTTTATAATGAACTTTTTTTCTATGAATTAAAA
125 AAATCACATCATTTGGTCTAAATATTTTGTAATTTTATAAACAACTTTTAGTCTTTAAATTAAAA
* * * * * * * *
24715891 A--CATTTTCGTGAGAATTGTTTCTTTGTTAGTTCTTTG-CAAAACTTTCGAACTTGTTAT-GCT
190 ATTTATTTTCGTGAGAATAGTTTCTCTCTTAGTTCTTGGAC-GAACTTTCGAACTTGTTATAACA
* * * * **
24715952 TTTATGAGTTCTTATATAACTTCGGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGAAAT
254 TTTATGAATTCTTTTATAACTTCGGTT-AATAGAGTATTCAAGACGATCCATTCCTTCGACCAAT
** * * *
24716017 TTTCCAAACATTCCAAGCTCGGGAAATCACATCATTTG-GTCTAAATAGTTTGTCATTTTGTAAA
318 TTTCTGAACATTCCATGCTCGAGAAATCACATCA-TTGAGTCTAAATAGTTT-TAATTTTGTAAA
* * * * * *
24716081 TAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGCT
381 AAACTTTTGGTCTTTGAATTAAAAACTGATTCACATAAGAACTGTTTCTCTCTTGGTTCTTGGAT
* * * *
24716146 GAACTTTCGAACTTGTTATACTTTTATGAGTTGTTTTATAACTTCGGCTCCTGAAAGTATTCAAG
446 GAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGCTCCTGAAAGTATTAAAG
** *
24716211 ACGATCCATTCATTTGAGCAATTTTCCAAACATTCCATGCTCGGGAAATTGCATCACTTGGTCTA
511 ACGATCCATTCATCCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCACTTGGTCTA
* * * *
24716276 AATAGTTTGTCATTTTGTATAAAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG
576 AATAGTTTGTCATTTTGTAAAAAACTTTTGGTATTTAAATTAAAAACCTATTTACATGAGAATTG
* * * * * *
24716341 TTTCTCTCTAGGTTCTTGGACAAACTTCTAAACTTGTCAAACATTTAAGAGTTATTTTATTACTT
641 TTTCTCACTAGGTTCTTGAACAAACTTCCAAACTTGCCAAACATTTAAGAGTTATTTCATAACTT
* * *
24716406 CGGTTGCTAAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCCCGAACATTCCATGCTCAG
706 CGGTTCCTAAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTCCCGAACATTCCATGATCAG
*
24716471 GAAATCGCATCATTT-G---GTCC--AAAT-A-G-T-TT-GTCATTTTGTAAACAATTTTTTGTC
771 GAAATCGCATCATTTAGCTACTCCATAAATAATGATATTGGTCATTTTGTAAACAATTTTTTGTC
24716525 TTTAAAGTAAAAAACTTATTTAAGTGAGAATTGTTTCA
836 TTTAAAGTAAAAAACTTATTTAAGTGAGAATTGTTTCA
*
24716563 CTCTTGGTTCTTGGACAAACATCCGAACTTTTCAAAATAACGAGTTCTTTTATAACTTCGAATTT
1 CTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAAATAACGAGTTCTTTTATAACTTCGAATTT
24716628 TGAGAGTATTCAAGATGATCCATTCTTACGACCAATTTTTCGAGCATTCCATGCTCGGGAAATCA
66 TGAGAGTATTCAAGATGATCCATTCTTACGACCAATTTTTCGAGCATTCCATGCTCGGGAAATCA
* *
24716693 CATCATTTGGTCTAAATATTTTGTAATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAATTTAT
131 CATCATTTGGTCTAAATATTTTGTAATTTTATAAACAACTTTTAGTCTTTAAATTAAAAATTTAT
24716758 TTTCGTGAGAATAGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTTATAACATTTATGA
196 TTTCGTGAGAATAGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTTATAACATTTATGA
* *
24716823 TTTCTTTTATAACTTCGGTTAATATGAGTATTCAAGACGATCCATTCCTTTGACCAATTTTCTGA
261 ATTCTTTTATAACTTCGGTTAATA-GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCTGA
*
24716888 ACATTCCATGCTCGAGAAATCTCATCATTGAGTCTAAATAGTCTTTAATTTTGTAAAAATACTTT
325 ACATTCCATGCTCGAGAAATCACATCATTGAGTCTAAATAGT-TTTAATTTTGTAAAAA-ACTTT
* *
24716953 TGGTCTTTGAATTAAAAGCTGATTCACATGAGAACTGTTTCTCTCTTGG-T-TTGGATGAA-TTT
388 TGGTCTTTGAATTAAAAACTGATTCACATAAGAACTGTTTCTCTCTTGGTTCTTGGATGAACTTT
* * * *
24717015 CAGAACTTGTCAAACTTTT-TCTAGTTCTTTTATAACTTCGGTTCGTTAAAGTATTAAACG-CGA
453 C-GAACTTGTCAAACTTTTAT-GAGTTCTTTTATAACTTCGGCTCCTGAAAGTATTAAA-GACGA
* * * * * * *
24717078 TCCATTCCTCCGAGTAATTTTTCGAACATTCCATGCTCGAGG-AATCGCATCATTTGGTTTTAAT
515 TCCATTCATCCGAGCAATTTTCCAAACATTCCATGCTCG-GGAAATCGCATCACTTGGTCTAAAT
* *
24717142 AGTTTGTCATTTTGTAAAAAACTTTTGGTATTTGAATTAAAAACCTATTTATATGAGAATTGTTT
579 AGTTTGTCATTTTGTAAAAAACTTTTGGTATTTAAATTAAAAACCTATTTACATGAGAATTGTTT
* * ** *
24717207 CTCACTTGGTTTTTGAATGAACTTCCAAACTTGCCAAACATTTAA-ATGTTCTTTCATAACTTCG
644 CTCACTAGGTTCTTGAACAAACTTCCAAACTTGCCAAACATTTAAGA-GTTATTTCATAACTTCG
* * *** * *
24717271 GTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATTATCGGGA
708 GTTCCTAAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTCCCGAACATTCCATGATCAGGA
* ** *
24717336 AATTGCATCATTTAGTCTACATAGTTTTTCATTTTGCAATAAACTTTTGGTCTAAATAGTTTGTC
773 AATCGCATCATTTAG-CTAC--------TC------C-ATAAA-TAAT-G-----ATA-TTGGTC
24717401 ATTTTGTAAACAATTTTTTGTCTTTAAAGTAAAAAACTTATTTAAGTGAGAATTGTTTCA
814 ATTTTGTAAACAATTTTTTGTCTTTAAAGTAAAAAACTTATTTAAGTGAGAATTGTTTCA
* * *
24717461 CTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAAATAACAAGTTCTTTTATAACTTTGATTTT
1 CTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAAATAACGAGTTCTTTTATAACTTCGAATTT
* * *
24717526 TGAGAGTGTTCAAGATAATCCATTCTTACGACCAATTTTTTGAGCATTCCATGCTCGGGAAATCA
66 TGAGAGTATTCAAGATGATCCATTCTTACGACCAATTTTTCGAGCATTCCATGCTCGGGAAATCA
* *
24717591 CATCACTTGGTCTAAATATTTTGTAATTTTCTAAACAACTTTTAGTCTTTAAATT-AAAATTGTA
131 CATCATTTGGTCTAAATATTTTGTAATTTTATAAACAACTTTTAGTCTTTAAATTAAAAATT-TA
* * * **
24717655 TTTTCGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTA-AAGATTAACA
195 TTTTCGTGAGAATAGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTTATAACATTTATG
* *
24717719 AATTCTTTTATAACTTTGGTTACTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCTG
260 AATTCTTTTATAACTTCGGTTAAT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCTG
*
24717784 AACATTCCTTGCTCGAGAAATCACATCATTGAGTCTAAATAGTTTT
324 AACATTCCATGCTCGAGAAATCACATCATTGAGTCTAAATAGTTTT
24717830 TATAGCCAAT
Statistics
Matches: 1092, Mismatches: 121, Indels: 75
0.85 0.09 0.06
Matches are distributed among these distances:
860 6 0.01
861 123 0.11
862 9 0.01
863 368 0.34
864 116 0.11
865 50 0.05
876 2 0.00
882 1 0.00
885 3 0.00
886 1 0.00
889 1 0.00
895 1 0.00
896 3 0.00
897 114 0.10
898 294 0.27
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (873 bp):
CTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAAATAACGAGTTCTTTTATAACTTCGAATTT
TGAGAGTATTCAAGATGATCCATTCTTACGACCAATTTTTCGAGCATTCCATGCTCGGGAAATCA
CATCATTTGGTCTAAATATTTTGTAATTTTATAAACAACTTTTAGTCTTTAAATTAAAAATTTAT
TTTCGTGAGAATAGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTTATAACATTTATGA
ATTCTTTTATAACTTCGGTTAATAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAA
CATTCCATGCTCGAGAAATCACATCATTGAGTCTAAATAGTTTTAATTTTGTAAAAAACTTTTGG
TCTTTGAATTAAAAACTGATTCACATAAGAACTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGA
ACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGCTCCTGAAAGTATTAAAGACGATCCATT
CATCCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCACTTGGTCTAAATAGTTTGT
CATTTTGTAAAAAACTTTTGGTATTTAAATTAAAAACCTATTTACATGAGAATTGTTTCTCACTA
GGTTCTTGAACAAACTTCCAAACTTGCCAAACATTTAAGAGTTATTTCATAACTTCGGTTCCTAA
AAGTATTCAAGACGATCCATTCCTTCGACCAATTTCCCGAACATTCCATGATCAGGAAATCGCAT
CATTTAGCTACTCCATAAATAATGATATTGGTCATTTTGTAAACAATTTTTTGTCTTTAAAGTAA
AAAACTTATTTAAGTGAGAATTGTTTCA
Found at i:24717776 original size:216 final size:214
Alignment explanation
Indices: 24717382--24717829 Score: 571
Period size: 216 Copynumber: 2.1 Consensus size: 214
24717372 CAATAAACTT
* * * * *
24717382 TTGGTCTAAATAGTTTGTCATTTTGTAAACAATTTTTTGTCTTTAAAGTAAAAAACTTATTTAAG
1 TTGGTCTAAATATTTTGTAATTTTCTAAACAACTTTTAGTCTTTAAAGTAAAAAACTTATTTAAG
* *
24717447 TGAGAATTGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAAATAACAAGTTCTTTT
66 TGAGAATAGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAAATAACAAATTCTTTT
** * * * * *
24717512 ATAACTTTGATTTTTGAGAGTGTTCAAGATAATCCATTCTTACGACCAATTTTTTGAGCATTCCA
131 ATAACTTTGATTACTAAGAGTATTCAAGACAATCCATTCTTACGACCAATTTTCTGAACATTCCA
*
24717577 TGCTCGGGAAATCACATCA
196 TGCTCGAGAAATCACATCA
* * *
24717596 CTTGGTCTAAATATTTTGTAATTTTCTAAACAACTTTTAGTCTTTAAA-T-TAAAATTGTATTTT
1 -TTGGTCTAAATATTTTGTAATTTTCTAAACAACTTTTAGTCTTTAAAGTAAAAAACT-TATTTA
* * * *
24717659 CGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTT-AAAGATTAACAAATT
64 AGTGAGAATAGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTT-TTCAAA-A-TAACAAATT
* *
24717723 CTTTTATAACTTTGGTTACTAAGAGTATTCAAGACGATCCATTCCTT-CGACCAATTTTCTGAAC
126 CTTTTATAACTTTGATTACTAAGAGTATTCAAGACAATCCATT-CTTACGACCAATTTTCTGAAC
*
24717787 ATTCCTTGCTCGAGAAATCACATCA
190 ATTCCATGCTCGAGAAATCACATCA
24717812 TTGAGTCTAAATAGTTTT
1 TTG-GTCTAAATA-TTTT
24717830 TATAGCCAAT
Statistics
Matches: 201, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
213 5 0.02
214 50 0.25
215 48 0.24
216 91 0.45
217 7 0.03
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (214 bp):
TTGGTCTAAATATTTTGTAATTTTCTAAACAACTTTTAGTCTTTAAAGTAAAAAACTTATTTAAG
TGAGAATAGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAAATAACAAATTCTTTT
ATAACTTTGATTACTAAGAGTATTCAAGACAATCCATTCTTACGACCAATTTTCTGAACATTCCA
TGCTCGAGAAATCACATCA
Found at i:24725053 original size:183 final size:183
Alignment explanation
Indices: 24724745--24725081 Score: 593
Period size: 183 Copynumber: 1.8 Consensus size: 183
24724735 TTCATCACTC
* * *
24724745 GATTATATGGCATGTACTAGGATGATGATACCCTTGAAATGCTTGGTTTTGGATTGTTGGTTTCT
1 GATTATATGGCATGTACTAGGATGATGATACCCTTGAAATGCTTGATTTTGGATTCTTGATTTCT
24724810 TTATTGAACTAAACTTGCATGATTGCTTGATGTTCTAATTAAGGAAATGTGTTTTGTAATGAGTT
66 TTATTGAACTAAACTTGCATGATTGCTTGATGTTCTAATTAAGGAAATGTGTTTTGTAATGAGTT
24724875 GACATGTGAATTTAAGTATCCTTGAAATGTTTGATTTTGGATTTTTGCTTGAT
131 GACATGTGAATTTAAGTATCCTTGAAATGTTTGATTTTGGATTTTTGCTTGAT
* *
24724928 GATTATATGGCATGTACTGGGATGATGATACCCTTGAAATGCTTGATTTTGGATTCTTTATTTCT
1 GATTATATGGCATGTACTAGGATGATGATACCCTTGAAATGCTTGATTTTGGATTCTTGATTTCT
* * * *
24724993 TTGTTGAACTAAACTTGGATGCTTTCTTGATGTTCTAATTAAGGAAATGTGTTTTGTAATGAGTT
66 TTATTGAACTAAACTTGCATGATTGCTTGATGTTCTAATTAAGGAAATGTGTTTTGTAATGAGTT
24725058 GACATGTGAATTTAAGTATCCTTG
131 GACATGTGAATTTAAGTATCCTTG
24725082 TCTTGATTGA
Statistics
Matches: 145, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
183 145 1.00
ACGTcount: A:0.25, C:0.09, G:0.22, T:0.43
Consensus pattern (183 bp):
GATTATATGGCATGTACTAGGATGATGATACCCTTGAAATGCTTGATTTTGGATTCTTGATTTCT
TTATTGAACTAAACTTGCATGATTGCTTGATGTTCTAATTAAGGAAATGTGTTTTGTAATGAGTT
GACATGTGAATTTAAGTATCCTTGAAATGTTTGATTTTGGATTTTTGCTTGAT
Found at i:24741354 original size:20 final size:21
Alignment explanation
Indices: 24741329--24741375 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
24741319 GTCATTGTAA
*
24741329 TTTTTACTTTTACTT-TTTGC
1 TTTTTACTTTTACTTGTTTCC
* *
24741349 TTTTTATTTTTATTTGTTTCC
1 TTTTTACTTTTACTTGTTTCC
24741370 TTTTTA
1 TTTTTA
24741376 GTTTGATGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.11, C:0.11, G:0.04, T:0.74
Consensus pattern (21 bp):
TTTTTACTTTTACTTGTTTCC
Found at i:24743529 original size:19 final size:18
Alignment explanation
Indices: 24743495--24743545 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
24743485 CGATTGACTC
24743495 GAAGGACAAGAAAAGAAAAA
1 GAAGGAC-A-AAAAGAAAAA
24743515 GGAAGGACAAAAAGAAAAA
1 -GAAGGACAAAAAGAAAAA
*
24743534 GAAGCACAAAAA
1 GAAGGACAAAAA
24743546 AGAGCGCCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 11 0.38
19 10 0.34
20 1 0.03
21 7 0.24
ACGTcount: A:0.69, C:0.08, G:0.24, T:0.00
Consensus pattern (18 bp):
GAAGGACAAAAAGAAAAA
Found at i:24743546 original size:19 final size:20
Alignment explanation
Indices: 24743495--24743548 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
24743485 CGATTGACTC
24743495 GAAGGACAAGAAAAGAAAAAG
1 GAAGGACAA-AAAAGAAAAAG
24743516 GAAGGAC-AAAAAGAAAAA-
1 GAAGGACAAAAAAGAAAAAG
*
24743534 GAAGCACAAAAAAGA
1 GAAGGACAAAAAAGA
24743549 GCGCCCAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 6 0.19
19 17 0.55
20 1 0.03
21 7 0.23
ACGTcount: A:0.69, C:0.07, G:0.24, T:0.00
Consensus pattern (20 bp):
GAAGGACAAAAAAGAAAAAG
Found at i:24746811 original size:17 final size:16
Alignment explanation
Indices: 24746786--24746828 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
24746776 AAAAGAATAC
24746786 AAAGAATAAAAGAGAAGG
1 AAAG-ATAAAAGA-AAGG
*
24746804 AAAGATAAAAGAAATG
1 AAAGATAAAAGAAAGG
24746820 AAAGGATAA
1 AAA-GATAA
24746829 TTTAACTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 6 0.26
17 13 0.57
18 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.23, T:0.09
Consensus pattern (16 bp):
AAAGATAAAAGAAAGG
Found at i:24747612 original size:2 final size:2
Alignment explanation
Indices: 24747607--24747634 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
24747597 TAAAACACAC
24747607 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24747635 GAGAAGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24751162 original size:20 final size:20
Alignment explanation
Indices: 24751133--24751175 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
24751123 CAAATGACAA
* *
24751133 GAAATCAATAAACCAATCTG
1 GAAATAAATAAACCAATATG
24751153 GAAATAAATAAACCAATATG
1 GAAATAAATAAACCAATATG
24751173 GAA
1 GAA
24751176 TATTAACTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.14, G:0.12, T:0.19
Consensus pattern (20 bp):
GAAATAAATAAACCAATATG
Found at i:24754173 original size:25 final size:26
Alignment explanation
Indices: 24754132--24754180 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
24754122 CTCGGACTTA
*
24754132 ACTTTCTTTATGCACAA-ACCTTAGG
1 ACTTTCTTCATGCACAATACCTTAGG
24754157 ACTTTCTTCCATG-ACAATACCTTA
1 ACTTTCTT-CATGCACAATACCTTA
24754181 AGAAGCACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.37
Consensus pattern (26 bp):
ACTTTCTTCATGCACAATACCTTAGG
Found at i:24756181 original size:29 final size:30
Alignment explanation
Indices: 24756108--24756188 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
24756098 TCAAATGTAG
* *
24756108 CAGAGAACAGCCACAAAGGCTTTCACATAT
1 CAGAGAACAACCACAAAGGCTTACACATAT
* *
24756138 CAGAGAATAATCACAAAGG-TTACACATAT
1 CAGAGAACAACCACAAAGGCTTACACATAT
* *
24756167 CATATAACAACCACAAAGGCTT
1 CAGAGAACAACCACAAAGGCTT
24756189 CTACATTTTC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 24 0.57
30 18 0.43
ACGTcount: A:0.44, C:0.23, G:0.14, T:0.19
Consensus pattern (30 bp):
CAGAGAACAACCACAAAGGCTTACACATAT
Found at i:24758058 original size:11 final size:11
Alignment explanation
Indices: 24758042--24758066 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24758032 AAAACATCCC
24758042 TTTTCTTTTCT
1 TTTTCTTTTCT
24758053 TTTTCTTTTCT
1 TTTTCTTTTCT
24758064 TTT
1 TTT
24758067 CCTTGTGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTCTTTTCT
Found at i:24774153 original size:20 final size:20
Alignment explanation
Indices: 24774117--24774154 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24774107 AATTTATGAG
*
24774117 TTTTATTTATTATGGACTAT
1 TTTTATTTATTAGGGACTAT
24774137 TTTTATCTTATT-GGGACT
1 TTTTAT-TTATTAGGGACT
24774155 TTTGTGGACT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.58
Consensus pattern (20 bp):
TTTTATTTATTAGGGACTAT
Found at i:24778238 original size:15 final size:15
Alignment explanation
Indices: 24778195--24778232 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 15
24778185 TGTGAGAGAT
*
24778195 ATTAATCTAAAGT--
1 ATTAATCTAAACTAA
24778208 ATTAATCTAAACTAA
1 ATTAATCTAAACTAA
24778223 ATTAATCTAA
1 ATTAATCTAA
24778233 GTTAAAGCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
15 10 0.45
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.37
Consensus pattern (15 bp):
ATTAATCTAAACTAA
Found at i:24786899 original size:27 final size:26
Alignment explanation
Indices: 24786836--24786908 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
24786826 ACATTCATTG
* *
24786836 GTTCTGGTTCTGGTGAAA-CTGGTTCT
1 GTTCTGGTTCTGGT-AAAGTTGATTCT
*
24786862 -TTTTGGTTCTGGTAAAGTTGATTCT
1 GTTCTGGTTCTGGTAAAGTTGATTCT
24786887 AGTTCTGGTTCTGGTAAAGTTG
1 -GTTCTGGTTCTGGTAAAGTTG
24786909 GTGTTTTGAC
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
24 3 0.08
25 18 0.45
27 19 0.47
ACGTcount: A:0.15, C:0.11, G:0.29, T:0.45
Consensus pattern (26 bp):
GTTCTGGTTCTGGTAAAGTTGATTCT
Found at i:24788723 original size:15 final size:15
Alignment explanation
Indices: 24788680--24788717 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 15
24788670 TATGAGAGAT
*
24788680 ATTAATCTAAAGT--
1 ATTAATCTAAACTAA
24788693 ATTAATCTAAACTAA
1 ATTAATCTAAACTAA
24788708 ATTAATCTAA
1 ATTAATCTAA
24788718 GTTAAAGCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
15 10 0.45
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.37
Consensus pattern (15 bp):
ATTAATCTAAACTAA
Found at i:24792419 original size:142 final size:142
Alignment explanation
Indices: 24792177--24792438 Score: 434
Period size: 142 Copynumber: 1.8 Consensus size: 142
24792167 AACAATTTAG
* * *
24792177 ACTTCTACCGAAATAAGTGACAGTTCTACCGATACAAGAGACTCTTGTATCGAACCAAGTTATAC
1 ACTTCTACCGAAACAAGTGACAGTTCTACCGATACAAGAGACTCTTGTACCGAACCAAGTCATAC
*
24792242 TTCTACCGATACTAAAAACTCCAGAGAGCTAAGAAGTCTAACCCTGCAACTTCTATAGATAGACA
66 TTCTACCGATACTAAAAACTCCAAAGAGCTAAGAAGTCTAACCCTGCAACTTCTATAGATAGACA
24792307 AGAATAGTTCAA
131 AGAATAGTTCAA
* * *
24792319 ACTTTTACCGACACAAGTTACAGTTCTACCGATACAAGAGACTCTTGTACCGAACCAAGTCATAC
1 ACTTCTACCGAAACAAGTGACAGTTCTACCGATACAAGAGACTCTTGTACCGAACCAAGTCATAC
* * *
24792384 TTCTACTGATACTAAAAACTCCAAAGAGCTAAGAAGTCTTACCCTGTAACTTCTA
66 TTCTACCGATACTAAAAACTCCAAAGAGCTAAGAAGTCTAACCCTGCAACTTCTA
24792439 CCAATAGAAG
Statistics
Matches: 110, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
142 110 1.00
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.26
Consensus pattern (142 bp):
ACTTCTACCGAAACAAGTGACAGTTCTACCGATACAAGAGACTCTTGTACCGAACCAAGTCATAC
TTCTACCGATACTAAAAACTCCAAAGAGCTAAGAAGTCTAACCCTGCAACTTCTATAGATAGACA
AGAATAGTTCAA
Found at i:24799301 original size:108 final size:107
Alignment explanation
Indices: 24798961--24799332 Score: 469
Period size: 108 Copynumber: 3.4 Consensus size: 107
24798951 TGGAAATGAA
* * *
24798961 TCACTATTGATTTCGTCAGTTTATCTGACTAGTGTTGGGCACACATTCGTCGGTTTATCCGACTA
1 TCACTATTTATTTCATCAGTTTATCTGACTAGTGTTGGGCACACATTCGTCGGTTTATCTGACTA
* *
24799026 GCACTGGATGCAATATTGATGGTTAATCCAACTAGAGCTGTGC
66 GCACTGGACGCAATATTGTTGGTTAATCCAACTAGAGCTG-GC
* * * * * *
24799069 TCACTATTTATTTCGTTAGTTTATTTGATTAGTGTTGGGCACACATTCATCGGTTTATCTAACTA
1 TCACTATTTATTTCATCAGTTTATCTGACTAGTGTTGGGCACACATTCGTCGGTTTATCTGACTA
* * *
24799134 GCACTGGGCGCAATATCGTTGGTTAATCCAACTAGAGCGGGGC
66 GCACTGGACGCAATATTGTTGGTTAATCCAACTAGAGC-TGGC
* **
24799177 TCACTATTTATTTCATCAGTTTATCTTACTAGTGTTGGGCACACATTCGTCAATTTATCTGACTA
1 TCACTATTTATTTCATCAGTTTATCTGACTAGTGTTGGGCACACATTCGTCGGTTTATCTGACTA
** *
24799242 GCACTACACGCAATATTGTTGGTTAATCCAACTAGACCTAGGC
66 GCACTGGACGCAATATTGTTGGTTAATCCAACTAGAGCT-GGC
* * * *
24799285 TCACT-TTTAATATCATC-GATTTATCTGACTAGCGCTGGGCACAGATTC
1 TCACTATTT-ATTTCATCAG-TTTATCTGACTAGTGTTGGGCACACATTC
24799333 TTTTGCGGTT
Statistics
Matches: 228, Mismatches: 32, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
107 4 0.02
108 223 0.98
109 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (107 bp):
TCACTATTTATTTCATCAGTTTATCTGACTAGTGTTGGGCACACATTCGTCGGTTTATCTGACTA
GCACTGGACGCAATATTGTTGGTTAATCCAACTAGAGCTGGC
Found at i:24799498 original size:19 final size:20
Alignment explanation
Indices: 24799474--24799512 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
24799464 ACATTGTTGA
24799474 ATATTTGGAGATATG-TGTT
1 ATATTTGGAGATATGATGTT
* *
24799493 ATATTTTGAGCTATGATGTT
1 ATATTTGGAGATATGATGTT
24799513 GAATTTGCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.26, C:0.03, G:0.23, T:0.49
Consensus pattern (20 bp):
ATATTTGGAGATATGATGTT
Found at i:24799518 original size:20 final size:20
Alignment explanation
Indices: 24799468--24799518 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
24799458 TTATGTACAT
24799468 TGTTGAATATTTGGAGATATG
1 TGTTGAAT-TTTGGAGATATG
*
24799489 TGTT-ATATTTT-GAGCTATG
1 TGTTGA-ATTTTGGAGATATG
24799508 ATGTTGAATTT
1 -TGTTGAATTT
24799519 GCTAAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 7 0.27
20 12 0.46
21 7 0.27
ACGTcount: A:0.25, C:0.02, G:0.24, T:0.49
Consensus pattern (20 bp):
TGTTGAATTTTGGAGATATG
Found at i:24813274 original size:16 final size:17
Alignment explanation
Indices: 24813247--24813282 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
24813237 AAAAAAATCC
24813247 AAAATTACAAGTCTCAA
1 AAAATTACAAGTCTCAA
*
24813264 AAAATTA-AAGTCTTAA
1 AAAATTACAAGTCTCAA
24813280 AAA
1 AAA
24813283 CGCTTTATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.58, C:0.11, G:0.06, T:0.25
Consensus pattern (17 bp):
AAAATTACAAGTCTCAA
Found at i:24819991 original size:20 final size:21
Alignment explanation
Indices: 24819966--24820005 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
24819956 ATATGTAATA
24819966 CTTTTCTTTAACTTT-CTTTT
1 CTTTTCTTTAACTTTACTTTT
*
24819986 CTTTTCTTTTACTTTACTTT
1 CTTTTCTTTAACTTTACTTT
24820006 CACTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.70
Consensus pattern (21 bp):
CTTTTCTTTAACTTTACTTTT
Found at i:24820005 original size:11 final size:11
Alignment explanation
Indices: 24819964--24820016 Score: 58
Period size: 10 Copynumber: 5.1 Consensus size: 11
24819954 TAATATGTAA
24819964 TACTTTTCTTT
1 TACTTTTCTTT
*
24819975 AAC-TTTCTTT
1 TACTTTTCTTT
24819985 T-CTTTTCTTT
1 TACTTTTCTTT
*
24819995 TACTTTACTTT
1 TACTTTTCTTT
*
24820006 CACTTTT-TTT
1 TACTTTTCTTT
24820016 T
1 T
24820017 CATTTACAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
9 1 0.03
10 18 0.53
11 15 0.44
ACGTcount: A:0.11, C:0.19, G:0.00, T:0.70
Consensus pattern (11 bp):
TACTTTTCTTT
Found at i:24828977 original size:3 final size:3
Alignment explanation
Indices: 24828971--24828998 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
24828961 GAAGATTCCA
24828971 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
24828999 GGAAGAGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:24835586 original size:20 final size:20
Alignment explanation
Indices: 24835540--24835642 Score: 66
Period size: 20 Copynumber: 5.0 Consensus size: 20
24835530 AGTTTCAAAC
*
24835540 AATTTTAAAATCAAGTTAAAAT
1 AATTTT-AAA-CAAGTCAAAAT
* *
24835562 GATTTTAAACATGTCAAAAT
1 AATTTTAAACAAGTCAAAAT
* *
24835582 AA-TTTGAACTAAGTCAAAGT
1 AATTTTAAAC-AAGTCAAAAT
* **
24835602 CATTTT-AACACTTCAAAAT
1 AATTTTAAACAAGTCAAAAT
**
24835621 GTTTTTCAAACAAGTCAAAAT
1 AATTTT-AAACAAGTCAAAAT
24835642 A
1 A
24835643 GTTCTAGAAC
Statistics
Matches: 61, Mismatches: 16, Indels: 9
0.71 0.19 0.10
Matches are distributed among these distances:
19 17 0.28
20 22 0.36
21 17 0.28
22 5 0.08
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.34
Consensus pattern (20 bp):
AATTTTAAACAAGTCAAAAT
Found at i:24835842 original size:18 final size:18
Alignment explanation
Indices: 24835819--24835863 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
24835809 CTTTGCTCAA
**
24835819 AAATATCGATAATTCTTG
1 AAATATCGATAACCCTTG
*
24835837 AAATATCGATACCCCTTG
1 AAATATCGATAACCCTTG
24835855 AAATATCGA
1 AAATATCGA
24835864 GACCAAACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (18 bp):
AAATATCGATAACCCTTG
Found at i:24835914 original size:141 final size:141
Alignment explanation
Indices: 24835678--24835963 Score: 545
Period size: 141 Copynumber: 2.0 Consensus size: 141
24835668 ATTTTCGGGC
24835678 AAATATCAATAATTCTTGAAATATCGATACCCCTTGAAATATCGAGACCAAACTTGCATTCTGTT
1 AAATATCAATAATTCTTGAAATATCGATACCCCTTGAAATATCGAGACCAAACTTGCATTCTGTT
*
24835743 TTGACAAGCCCTGAAAATATTGATATCTCTTTACAGATATCAATAATTTCTGAAAAACATCGATA
66 TTGACAAGCCCTGAAAATATCGATATCTCTTTACAGATATCAATAATTTCTGAAAAACATCGATA
24835808 CCTTTGCTCAA
131 CCTTTGCTCAA
*
24835819 AAATATCGATAATTCTTGAAATATCGATACCCCTTGAAATATCGAGACCAAACTTGCATTCTGTT
1 AAATATCAATAATTCTTGAAATATCGATACCCCTTGAAATATCGAGACCAAACTTGCATTCTGTT
*
24835884 TTGACAAGCCCTGAAAATATCGATATCTCTTTATAGATATCAATAATTTCTGAAAAACATCGATA
66 TTGACAAGCCCTGAAAATATCGATATCTCTTTACAGATATCAATAATTTCTGAAAAACATCGATA
24835949 CCTTTGCTCAA
131 CCTTTGCTCAA
24835960 AAAT
1 AAAT
24835964 GATACCAAAA
Statistics
Matches: 142, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
141 142 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (141 bp):
AAATATCAATAATTCTTGAAATATCGATACCCCTTGAAATATCGAGACCAAACTTGCATTCTGTT
TTGACAAGCCCTGAAAATATCGATATCTCTTTACAGATATCAATAATTTCTGAAAAACATCGATA
CCTTTGCTCAA
Found at i:24838776 original size:49 final size:49
Alignment explanation
Indices: 24838719--24838892 Score: 172
Period size: 50 Copynumber: 3.5 Consensus size: 49
24838709 AAGATGCTTA
* * *
24838719 AATGCATGACTTAATTAAAAGGCAAACTAAATGAACAAATGAGTTACAT
1 AATGCATGACATAATTAAAAGGCAAACTTAATTAACAAATGAGTTACAT
* * * *
24838768 AATGCATGACATAATTTAATGTGCAAATTTAATTAACACAA-GAGTTACTT
1 AATGCATGACATAATTAAAAG-GCAAACTTAATTAACA-AATGAGTTACAT
* ** * * **
24838818 AATGCATGACATAATCAAAACACAAACTTTATTAACATATGAGTTATGT
1 AATGCATGACATAATTAAAAGGCAAACTTAATTAACAAATGAGTTACAT
*
24838867 AATTGCAAGACATAATT-AAAGGCAAA
1 AA-TGCATGACATAATTAAAAGGCAAA
24838893 ACACATATTG
Statistics
Matches: 100, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
48 1 0.01
49 47 0.47
50 50 0.50
51 2 0.02
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.28
Consensus pattern (49 bp):
AATGCATGACATAATTAAAAGGCAAACTTAATTAACAAATGAGTTACAT
Found at i:24839390 original size:31 final size:29
Alignment explanation
Indices: 24839348--24839406 Score: 82
Period size: 31 Copynumber: 2.0 Consensus size: 29
24839338 ATGACGTAAA
* *
24839348 TAAAAAAAACTTTTCATTAATTCAATAATT
1 TAAAAAAAACTTTTAAATAATT-AATAATT
24839378 TAAATAAAAACTTTTAAATAATTAATAAT
1 TAAA-AAAAACTTTTAAATAATTAATAAT
24839407 GAAAGTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (29 bp):
TAAAAAAAACTTTTAAATAATTAATAATT
Found at i:24839681 original size:14 final size:14
Alignment explanation
Indices: 24839662--24839688 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24839652 TGGATAATGA
24839662 AGAGGAGGAGGTGT
1 AGAGGAGGAGGTGT
24839676 AGAGGAGGAGGTG
1 AGAGGAGGAGGTG
24839689 GTTCACAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.59, T:0.11
Consensus pattern (14 bp):
AGAGGAGGAGGTGT
Found at i:24853648 original size:21 final size:20
Alignment explanation
Indices: 24853622--24853671 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
24853612 TAATACTATT
* *
24853622 TAATTTTTTATTTTATTTTTA
1 TAATTTTTTAATAT-TTTTTA
*
24853643 TAATTTAATTAATATTTTTTA
1 TAATTT-TTTAATATTTTTTA
24853664 TAATTTTT
1 TAATTTTT
24853672 ATGTGAATAG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 18 0.75
22 5 0.21
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
TAATTTTTTAATATTTTTTA
Found at i:24853655 original size:30 final size:31
Alignment explanation
Indices: 24853601--24853661 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
24853591 GTAACAGTTA
*
24853601 ATTTTATTTTTTAATACTATTTAAT-TTTTT
1 ATTTTATTTTTTAATACTAATTAATATTTTT
*
24853631 ATTTTATTTTTATAAT-TTAATTAATATTTTT
1 ATTTTATTTTT-TAATACTAATTAATATTTTT
24853662 TATAATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 18 0.67
31 9 0.33
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.69
Consensus pattern (31 bp):
ATTTTATTTTTTAATACTAATTAATATTTTT
Found at i:24855424 original size:18 final size:18
Alignment explanation
Indices: 24855401--24855445 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
24855391 CCCAACACAG
24855401 TTCCCATCGCCACCTCAA
1 TTCCCATCGCCACCTCAA
*
24855419 TTCCCATCACCACCTCAA
1 TTCCCATCGCCACCTCAA
*
24855437 TTCTCATCG
1 TTCCCATCG
24855446 TCTTATGGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.22, C:0.47, G:0.04, T:0.27
Consensus pattern (18 bp):
TTCCCATCGCCACCTCAA
Found at i:24855889 original size:62 final size:58
Alignment explanation
Indices: 24855710--24855929 Score: 298
Period size: 59 Copynumber: 3.7 Consensus size: 58
24855700 ATTTATTTCA
* *
24855710 AATATTTTT-TATACATTATTTTTATATTGTTTCATTTAATAAAGTAGAAGTTCTTTTG
1 AATATTTTTGTACACATTATTTTTATATTGTTTAATTTAATAAA-TAGAAGTTCTTTTG
*
24855768 AATATTTTTGTATACATTATTTTTATATTGTTTAATTTAATAAAATAGAAGTTCTTTTG
1 AATATTTTTGTACACATTATTTTTATATTGTTTAATTTAAT-AAATAGAAGTTCTTTTG
* * *
24855827 AATATTTTTGTACAAATTATTTTTGTCATATTGTATAATTTAATGAAATAGAAGTTATTTTG
1 AATATTTTTGTACACATTA-TTTT-T-ATATTGTTTAATTTAAT-AAATAGAAGTTCTTTTG
** *
24855889 AATATTTTTCAACACATTATTTTTATATTGTTTCATTTAAT
1 AATATTTTTGTACACATTATTTTTATATTGTTTAATTTAAT
24855930 TCATAACCAA
Statistics
Matches: 146, Mismatches: 11, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
58 9 0.06
59 76 0.52
60 8 0.05
61 5 0.03
62 48 0.33
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (58 bp):
AATATTTTTGTACACATTATTTTTATATTGTTTAATTTAATAAATAGAAGTTCTTTTG
Found at i:24859559 original size:30 final size:31
Alignment explanation
Indices: 24859481--24859567 Score: 110
Period size: 29 Copynumber: 2.9 Consensus size: 31
24859471 AAAAATTATC
* *
24859481 CATCTTGTCAAAA-TAATTTCTTCAGAA-TA
1 CATCTTGTCAAAATTAATTTTTTCAAAACTA
* *
24859510 CATCATGTC-AAATTTATTTTTTCAAAACT-
1 CATCTTGTCAAAATTAATTTTTTCAAAACTA
24859539 CATCTTGTCAAAATTAATTTTTTCAAAAC
1 CATCTTGTCAAAATTAATTTTTTCAAAAC
24859568 AATGCTAAGC
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
28 3 0.06
29 27 0.55
30 19 0.39
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.41
Consensus pattern (31 bp):
CATCTTGTCAAAATTAATTTTTTCAAAACTA
Found at i:24859564 original size:15 final size:15
Alignment explanation
Indices: 24859519--24859566 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
24859509 ACATCATGTC
*
24859519 AAATTTATTTTTTCA
1 AAATTAATTTTTTCA
* * * *
24859534 AAACTCATCTTGTCA
1 AAATTAATTTTTTCA
24859549 AAATTAATTTTTTCA
1 AAATTAATTTTTTCA
24859564 AAA
1 AAA
24859567 CAATGCTAAG
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (15 bp):
AAATTAATTTTTTCA
Found at i:24859632 original size:24 final size:23
Alignment explanation
Indices: 24859588--24859632 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
24859578 AATTAAAAAA
* *
24859588 AATTAAATCCTAAAACCCTAAAC
1 AATTAAAACCTAAAAACCTAAAC
*
24859611 AATTAAAAACCTAAAAATCTAA
1 AATT-AAAACCTAAAAACCTAA
24859633 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 4 0.22
24 14 0.78
ACGTcount: A:0.58, C:0.20, G:0.00, T:0.22
Consensus pattern (23 bp):
AATTAAAACCTAAAAACCTAAAC
Found at i:24860964 original size:25 final size:26
Alignment explanation
Indices: 24860935--24860983 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
24860925 GTAAAAAAAG
* *
24860935 TTTTT-GAGTCCTTTAAAAGTTGAAT
1 TTTTTCGAGCCCTTTAAAAATTGAAT
*
24860960 TTTTTCGGGCCCTTTAAAAATTGA
1 TTTTTCGAGCCCTTTAAAAATTGA
24860984 CGGCTACACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 5 0.25
26 15 0.75
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (26 bp):
TTTTTCGAGCCCTTTAAAAATTGAAT
Found at i:24861886 original size:21 final size:20
Alignment explanation
Indices: 24861854--24861893 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
24861844 AAGAATAACC
24861854 AACAGAGAAGAAACAAAAAAT
1 AACAGAGAAG-AACAAAAAAT
24861875 AACACGAG-AGAACAAAAAA
1 AACA-GAGAAGAACAAAAAA
24861894 AAAGGAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.50
21 6 0.33
22 3 0.17
ACGTcount: A:0.70, C:0.12, G:0.15, T:0.03
Consensus pattern (20 bp):
AACAGAGAAGAACAAAAAAT
Found at i:24870843 original size:51 final size:50
Alignment explanation
Indices: 24870712--24870885 Score: 237
Period size: 51 Copynumber: 3.5 Consensus size: 50
24870702 AATTTTAAAA
* * * *
24870712 AACATGAGAGTTACCTAATGCATGATA-TATTTTATGATGCATATTTAACT
1 AACATGAAAGTTACATAATGCATGTTATTA-TTTATGATGCATACTTAACT
* * *
24870762 -ACATGTAAGTTACTTAATGCATGTCT-TTATTTATGATGCAAACTTAACT
1 AACATGAAAGTTACATAATGCATGT-TATTATTTATGATGCATACTTAACT
24870811 AATCATGAAAGTTACATAATGCATGTTATTATTTATGATGCATACTTAACT
1 AA-CATGAAAGTTACATAATGCATGTTATTATTTATGATGCATACTTAACT
24870862 AACATGAAAGTTACATAATGCATG
1 AACATGAAAGTTACATAATGCATG
24870886 AATTTATTAA
Statistics
Matches: 110, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
49 38 0.35
50 27 0.25
51 45 0.41
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (50 bp):
AACATGAAAGTTACATAATGCATGTTATTATTTATGATGCATACTTAACT
Found at i:24875382 original size:17 final size:17
Alignment explanation
Indices: 24875333--24875390 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
24875323 GTACTGACAT
*
24875333 TGACACATGGAAATGCAA
1 TGACA-ATGAAAATGCAA
* * *
24875351 TGACAATGCACATGCAG
1 TGACAATGAAAATGCAA
*
24875368 TGACAATTAAAATGCAA
1 TGACAATGAAAATGCAA
*
24875385 AGACAA
1 TGACAA
24875391 AGGGAATGTG
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
17 27 0.84
18 5 0.16
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (17 bp):
TGACAATGAAAATGCAA
Found at i:24881398 original size:18 final size:18
Alignment explanation
Indices: 24881377--24881414 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
24881367 AGGTTGCCTT
*
24881377 GACATAGCTAGTTGTGTC
1 GACATAGATAGTTGTGTC
*
24881395 GACATCGATAGTTGTGTC
1 GACATAGATAGTTGTGTC
24881413 GA
1 GA
24881415 TAATTTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.32
Consensus pattern (18 bp):
GACATAGATAGTTGTGTC
Found at i:24886604 original size:24 final size:23
Alignment explanation
Indices: 24886547--24886606 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
24886537 AAAAATCGAA
24886547 TTTC-CTTTGTTTTTTTTCAATAT
1 TTTCACTTT-TTTTTTTTCAATAT
* * *
24886570 TTTCAAATTTTTTTTTTTGAATTTT
1 TTTC-ACTTTTTTTTTTTCAA-TAT
24886595 TTTCACTTTTTT
1 TTTCACTTTTTT
24886607 CGAGAAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
23 4 0.13
24 17 0.57
25 9 0.30
ACGTcount: A:0.15, C:0.10, G:0.03, T:0.72
Consensus pattern (23 bp):
TTTCACTTTTTTTTTTTCAATAT
Found at i:24887649 original size:51 final size:49
Alignment explanation
Indices: 24887594--24887788 Score: 257
Period size: 50 Copynumber: 3.8 Consensus size: 49
24887584 ACTTGTTTTA
*
24887594 ATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATGAT-ATAATTT
1 ATGATGCAAAC-TTAACTAACATGA-AGTTACATAATGCATG-TCATTATTT
* * * *
24887645 ATGATGCATATTTAACTAACATGTAAGTTACTTAATGCATGTCTTTATTT
1 ATGATGCAAACTTAACTAACATG-AAGTTACATAATGCATGTCATTATTT
24887695 ATGATGCAAACTTAACTAATCATGAAAGTTACATAATGCATGTCATTATTT
1 ATGATGCAAACTTAACTAA-CATG-AAGTTACATAATGCATGTCATTATTT
24887746 ATGATGCATATACTTAACTAACATGAATGTTACATAATGCATG
1 ATGATGCA-A-ACTTAACTAACATGAA-GTTACATAATGCATG
24887789 ACTTTATTAA
Statistics
Matches: 128, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
49 1 0.01
50 49 0.38
51 48 0.38
52 20 0.16
53 10 0.08
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (49 bp):
ATGATGCAAACTTAACTAACATGAAGTTACATAATGCATGTCATTATTT
Found at i:24887719 original size:101 final size:103
Alignment explanation
Indices: 24887570--24887801 Score: 323
Period size: 101 Copynumber: 2.3 Consensus size: 103
24887560 AACAAATGGA
* *
24887570 TTACTAAATGCATGACTTGT-TTTAATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCA
1 TTACTTAATGCATGACTT-TATTTAATGATGCAAACTTTAACTAACATGAAAGTTACATAATGCA
24887634 TGAT-ATAATTTATGATGCATAT-TTAACTAACATGTAA-G
65 TG-TCATAATTTATGATGCATATATTAACTAACATG-AATG
*
24887672 TTACTTAATGCATGTCTTTATTT-ATGATGCAAAC-TTAACTAATCATGAAAGTTACATAATGCA
1 TTACTTAATGCATGACTTTATTTAATGATGCAAACTTTAACTAA-CATGAAAGTTACATAATGCA
*
24887735 TGTCATTATTTATGATGCATATACTTAACTAACATGAATG
65 TGTCATAATTTATGATGCATATA-TTAACTAACATGAATG
* *
24887775 TTACATAATGCATGACTTTATTAAATG
1 TTACTTAATGCATGACTTTATTTAATG
24887802 CAAATCACAT
Statistics
Matches: 116, Mismatches: 7, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
100 9 0.08
101 50 0.43
102 21 0.18
103 33 0.28
104 3 0.03
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.38
Consensus pattern (103 bp):
TTACTTAATGCATGACTTTATTTAATGATGCAAACTTTAACTAACATGAAAGTTACATAATGCAT
GTCATAATTTATGATGCATATATTAACTAACATGAATG
Found at i:24898828 original size:18 final size:18
Alignment explanation
Indices: 24898789--24898831 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
24898779 CAGAAGGAAT
*
24898789 AGCATATTGGCTCGTTAG
1 AGCATACTGGCTCGTTAG
24898807 AGCATACTGGCTCGTTTA-
1 AGCATACTGGCTCG-TTAG
24898825 AGCATAC
1 AGCATAC
24898832 CTACTCGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (18 bp):
AGCATACTGGCTCGTTAG
Found at i:24907352 original size:18 final size:18
Alignment explanation
Indices: 24907329--24907446 Score: 182
Period size: 18 Copynumber: 6.6 Consensus size: 18
24907319 CGGAAGGAAT
*
24907329 AGCATATTGGCTCGTTAG
1 AGCATACTGGCTCGTTAG
* *
24907347 AGCATACTGGCTCATTTG
1 AGCATACTGGCTCGTTAG
*
24907365 AGCATACTGGCTCTTTAG
1 AGCATACTGGCTCGTTAG
*
24907383 AGCATACTGGCTCGTTTG
1 AGCATACTGGCTCGTTAG
24907401 AGCATACTGGCTCGTTAG
1 AGCATACTGGCTCGTTAG
*
24907419 AGCATACTGGCTCGTAAG
1 AGCATACTGGCTCGTTAG
24907437 AGCATACTGG
1 AGCATACTGG
24907447 ATCGCAAGGA
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 91 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (18 bp):
AGCATACTGGCTCGTTAG
Found at i:24911706 original size:108 final size:108
Alignment explanation
Indices: 24911502--24911735 Score: 290
Period size: 108 Copynumber: 2.2 Consensus size: 108
24911492 TGAGCTGAAA
* * * * * *
24911502 TCTAAACGAGACATAAGCAATCAATTAGCATTACACTCTAATCGAGACGTAAGCAATTACATAGC
1 TCTAACCGAGACGTAAGCAATCAATTAGCATTACACTCTAACCAAGACATAAGCAACTACATAGC
* * * *
24911567 AATGCGCTCTAACTGAGACATATGTAGTCACATAGCATTACGC
66 AATACGCTCTAACCGAGACATATGCACTCACATAGCATTACGC
* ** * *
24911610 TCTAACTGAGACGTAAGCAATCTCTTAGCATTACGCTCTAACCAAGACATAAGCAACTATATAGC
1 TCTAACCGAGACGTAAGCAATCAATTAGCATTACACTCTAACCAAGACATAAGCAACTACATAGC
* *
24911675 AATACGCTCTAACCGAGA-AGTGTGCACTCACATAGCATTATGC
66 AATACGCTCTAACCGAGACA-TATGCACTCACATAGCATTACGC
*
24911718 TTTAACCGAGACGTAAGC
1 TCTAACCGAGACGTAAGC
24911736 TCTCTATCAA
Statistics
Matches: 106, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
107 1 0.01
108 105 0.99
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (108 bp):
TCTAACCGAGACGTAAGCAATCAATTAGCATTACACTCTAACCAAGACATAAGCAACTACATAGC
AATACGCTCTAACCGAGACATATGCACTCACATAGCATTACGC
Found at i:24911710 original size:36 final size:36
Alignment explanation
Indices: 24911502--24911735 Score: 186
Period size: 36 Copynumber: 6.5 Consensus size: 36
24911492 TGAGCTGAAA
* * *
24911502 TCTAAACGAGACATAAGCAATCA-ATTAGCATTACAC
1 TCTAACCGAGACATAAGCACTCACA-TAGCATTACGC
* * * * * *
24911538 TCTAATCGAGACGTAAGCAATTACATAGCAATGCGC
1 TCTAACCGAGACATAAGCACTCACATAGCATTACGC
* * * *
24911574 TCTAACTGAGACATATGTAGTCACATAGCATTACGC
1 TCTAACCGAGACATAAGCACTCACATAGCATTACGC
* * * * *
24911610 TCTAACTGAGACGTAAGCAATCTCTTAGCATTACGC
1 TCTAACCGAGACATAAGCACTCACATAGCATTACGC
* * *
24911646 TCTAACCAAGACATAAGCAACT-ATATAGCAATACGC
1 TCTAACCGAGACATAAGC-ACTCACATAGCATTACGC
** *
24911682 TCTAACCGAGA-AGTGTGCACTCACATAGCATTATGC
1 TCTAACCGAGACA-TAAGCACTCACATAGCATTACGC
* *
24911718 TTTAACCGAGACGTAAGC
1 TCTAACCGAGACATAAGC
24911736 TCTCTATCAA
Statistics
Matches: 154, Mismatches: 39, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
35 4 0.03
36 147 0.95
37 3 0.02
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (36 bp):
TCTAACCGAGACATAAGCACTCACATAGCATTACGC
Done.