Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 84 of 126
Found at i:25638216 original size:30 final size:29
Alignment explanation
Indices: 25638153--25638504 Score: 278
Period size: 30 Copynumber: 12.1 Consensus size: 29
25638143 AAAGTTTCGA
* *
25638153 AAAGTTT-GAGGTAAAAATGTAATTTTGG
1 AAAGTTTAGGGGTAAAAATGTAATTTTTG
*
25638181 AAAGTTTAGGGGTAAAAATGTAATTTTAAG
1 AAAGTTTAGGGGTAAAAATGTAATTTT-TG
*
25638211 AAAGTTTA-GGGTAAAAAATGTGATTTTTG
1 AAAGTTTAGGGGT-AAAAATGTAATTTTTG
*
25638240 GAAG-TTA-GGG-AAAAATGTAATTTTTG
1 AAAGTTTAGGGGTAAAAATGTAATTTTTG
* * *
25638266 AGAAGTTTGGGGGTAAAAATTTGATTTTTG
1 A-AAGTTTAGGGGTAAAAATGTAATTTTTG
* *
25638296 GAAGTTT-GAGGGCAAAAATGTAATTTTTG
1 AAAGTTTAG-GGGTAAAAATGTAATTTTTG
* * *
25638325 AAAAGTTTAAGGGTCAAAATGTGATTTTTG
1 -AAAGTTTAGGGGTAAAAATGTAATTTTTG
* * * *
25638355 GAAGTTCAAGGG-CAAAATGTAATTTTTG
1 AAAGTTTAGGGGTAAAAATGTAATTTTTG
* *
25638383 AGAAGTTTTA-GGGTTAAAATGTAATTTTAG
1 A-AAG-TTTAGGGGTAAAAATGTAATTTTTG
* * * *
25638413 AAAAGTTTAAGGGTCAAAATGCAATTTTAG
1 -AAAGTTTAGGGGTAAAAATGTAATTTTTG
* *
25638443 AAAAGTTT-GAGGGT-CAAATGTAATTTTGG
1 -AAAGTTTAG-GGGTAAAAATGTAATTTTTG
*
25638472 AAAAGTTTAGGGGTCAAAAT-TAGATTTTT-
1 -AAAGTTTAGGGGTAAAAATGTA-ATTTTTG
25638501 AAAG
1 AAAG
25638505 AAAATAGAGG
Statistics
Matches: 271, Mismatches: 34, Indels: 38
0.79 0.10 0.11
Matches are distributed among these distances:
26 15 0.06
27 3 0.01
28 35 0.13
29 98 0.36
30 119 0.44
31 1 0.00
ACGTcount: A:0.38, C:0.02, G:0.25, T:0.35
Consensus pattern (29 bp):
AAAGTTTAGGGGTAAAAATGTAATTTTTG
Found at i:25638486 original size:59 final size:58
Alignment explanation
Indices: 25638151--25638500 Score: 317
Period size: 59 Copynumber: 6.0 Consensus size: 58
25638141 ATAAAGTTTC
*
25638151 GAAAAGTTTGA-GGTAAAAATGT-AATTTTGGAAAGTTTAGGGGTAAAAATGTAA-TTTT
1 GAAAAGTTTGAGGGTAAAAATGTGAATTTTGG-AAGTTTAGGGG-CAAAATGTAATTTTT
* * *
25638208 AAGAAAGTTT-AGGGTAAAAAATGTGATTTTTGGAAG-TTA-GGGAAAAATGTAATTTTT
1 GA-AAAGTTTGAGGGT-AAAAATGTGAATTTTGGAAGTTTAGGGGCAAAATGTAATTTTT
* * * *
25638265 GAGAAGTTTGGGGGTAAAAATTTGATTTTTGGAAGTTT-GAGGGCAAAAATGTAATTTTT
1 GAAAAGTTTGAGGGTAAAAATGTGAATTTTGGAAGTTTAG-GGGC-AAAATGTAATTTTT
* * * * *
25638324 GAAAAGTTTAAGGGTCAAAATGTGATTTTTGGAAGTTCAAGGGCAAAATGTAATTTTT
1 GAAAAGTTTGAGGGTAAAAATGTGAATTTTGGAAGTTTAGGGGCAAAATGTAATTTTT
* * * * * * *
25638382 GAGAAGTTTTAGGGTTAAAATGT-AATTTTAGAAAAGTTTAAGGGTCAAAATGCAATTTTA
1 GAAAAGTTTGAGGGTAAAAATGTGAATTTT-G-GAAGTTT-AGGGGCAAAATGTAATTTTT
*
25638442 GAAAAGTTTGAGGGT-CAAATGT-AATTTTGGAAAAGTTTAGGGGTCAAAAT-TAGATTTTT
1 GAAAAGTTTGAGGGTAAAAATGTGAATTTTGG--AAGTTTAGGGG-CAAAATGTA-ATTTTT
25638501 AAAGAAAATA
Statistics
Matches: 244, Mismatches: 31, Indels: 34
0.79 0.10 0.11
Matches are distributed among these distances:
56 35 0.14
57 21 0.09
58 57 0.23
59 95 0.39
60 36 0.15
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.35
Consensus pattern (58 bp):
GAAAAGTTTGAGGGTAAAAATGTGAATTTTGGAAGTTTAGGGGCAAAATGTAATTTTT
Found at i:25638798 original size:18 final size:19
Alignment explanation
Indices: 25638757--25638799 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
25638747 TGAAAATGAA
*
25638757 ATAAAATTAATGAGCAAAT
1 ATAAAATTAATGAGAAAAT
* *
25638776 TTAAAATTAATTA-AAAAT
1 ATAAAATTAATGAGAAAAT
25638794 ATAAAA
1 ATAAAA
25638800 AGGACTTGGT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (19 bp):
ATAAAATTAATGAGAAAAT
Found at i:25639380 original size:6 final size:6
Alignment explanation
Indices: 25639361--25639390 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
25639351 CACACGAGGT
*
25639361 AAACCC AAATCC AAACCC AAACCC AAACCC
1 AAACCC AAACCC AAACCC AAACCC AAACCC
25639391 TTTTCTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (6 bp):
AAACCC
Found at i:25647532 original size:40 final size:39
Alignment explanation
Indices: 25647483--25647579 Score: 149
Period size: 40 Copynumber: 2.4 Consensus size: 39
25647473 AGGTTCATGT
25647483 GTCTTCCTTTTAACAATCTTATGCTCTACCGAGTCATAA
1 GTCTTCCTTTTAACAATCTTATGCTCTACCGAGTCATAA
* *
25647522 GTCTTCCCTTTTAATAATCTTATGCTCTATCGAGTCATAA
1 GTCTT-CCTTTTAACAATCTTATGCTCTACCGAGTCATAA
*
25647562 GTATTCCTGTTTAACAAT
1 GTCTTCCT-TTTAACAAT
25647580 ATTCTCACAC
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
39 8 0.15
40 44 0.85
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (39 bp):
GTCTTCCTTTTAACAATCTTATGCTCTACCGAGTCATAA
Found at i:25676438 original size:23 final size:23
Alignment explanation
Indices: 25676407--25676451 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
25676397 TAAAGAAATA
* *
25676407 AATTTAACCCAATTTAATTAATC
1 AATTCAACCCAAATTAATTAATC
*
25676430 AATTCAACCCAAATTATTTAAT
1 AATTCAACCCAAATTAATTAAT
25676452 GAAATATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (23 bp):
AATTCAACCCAAATTAATTAATC
Found at i:25686436 original size:68 final size:68
Alignment explanation
Indices: 25686341--25686487 Score: 285
Period size: 68 Copynumber: 2.2 Consensus size: 68
25686331 AGGTTTGAAA
25686341 CAATTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGGTTAGAGTTGTTATGTAAC
1 CAATTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGGTTAGAGTTGTTATGTAAC
*
25686406 CTG
66 CCG
25686409 CAATTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGGTTAGAGTTGTTATGTAAC
1 CAATTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGGTTAGAGTTGTTATGTAAC
25686474 CCG
66 CCG
25686477 CAATTTAATCA
1 CAATTTAATCA
25686488 GGTTAGGATC
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 78 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (68 bp):
CAATTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGGTTAGAGTTGTTATGTAAC
CCG
Found at i:25687423 original size:23 final size:22
Alignment explanation
Indices: 25687392--25687435 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
25687382 AAAGAAATAA
*
25687392 AATTAACCCAATTTAATTAATT
1 AATTAACCCAAATTAATTAATT
*
25687414 AATTCAACCCAAATTATTTAAT
1 AATT-AACCCAAATTAATTAAT
25687436 GAAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTAACCCAAATTAATTAATT
Found at i:25696879 original size:71 final size:72
Alignment explanation
Indices: 25696782--25696920 Score: 244
Period size: 71 Copynumber: 1.9 Consensus size: 72
25696772 TGGAGGGATA
25696782 CAATGTTTCATTCAAGAGTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGACT
1 CAATGTTTCATT--AGAGTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGACT
25696847 GTTCATATT
64 GTTCATATT
*
25696856 CAATGTTTCATT-GAGTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGGCTGT
1 CAATGTTTCATTAGAGTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGACTGT
25696920 T
66 T
25696921 AACTTTCATT
Statistics
Matches: 64, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
71 52 0.81
74 12 0.19
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.40
Consensus pattern (72 bp):
CAATGTTTCATTAGAGTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGACTGT
TCATATT
Found at i:25696969 original size:13 final size:13
Alignment explanation
Indices: 25696934--25696961 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25696924 TTTCATTCTG
25696934 TAAAGCCTATAAA
1 TAAAGCCTATAAA
25696947 TAAAGCCTATAAA
1 TAAAGCCTATAAA
25696960 TA
1 TA
25696962 GAGGCTATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.14, G:0.07, T:0.25
Consensus pattern (13 bp):
TAAAGCCTATAAA
Found at i:25710474 original size:22 final size:22
Alignment explanation
Indices: 25710446--25710504 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
25710436 CCCAACGAGC
25710446 TGTTGCCATCGAAGGGACTTGG
1 TGTTGCCATCGAAGGGACTTGG
* *
25710468 TGTTGCCGTCGAAAGGACTTGG
1 TGTTGCCATCGAAGGGACTTGG
*
25710490 TGTTGCCATCAAAGG
1 TGTTGCCATCGAAGG
25710505 CCAAGGTGTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.20, C:0.19, G:0.34, T:0.27
Consensus pattern (22 bp):
TGTTGCCATCGAAGGGACTTGG
Found at i:25713933 original size:23 final size:24
Alignment explanation
Indices: 25713907--25713952 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
25713897 CTAACATGAA
*
25713907 AACCCAC-GGTTCCTATCACCTAT
1 AACCCACAGATTCCTATCACCTAT
25713930 AACCCACATGATTCCTATCACCT
1 AACCCACA-GATTCCTATCACCT
25713953 TCGTATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
25 13 0.65
ACGTcount: A:0.28, C:0.39, G:0.07, T:0.26
Consensus pattern (24 bp):
AACCCACAGATTCCTATCACCTAT
Found at i:25722657 original size:43 final size:43
Alignment explanation
Indices: 25722590--25722955 Score: 155
Period size: 43 Copynumber: 8.3 Consensus size: 43
25722580 GCAAAACAAG
* * * **
25722590 ATCCAAGGCACCAAGGTGCTGATGGTGTCCGACGCTCTTGCAC
1 ATCCAAGGCACAAAAGTGCCGATGGTGTCCGACGCTCCCGCAC
25722633 ATCCAAGGCACAAAAGTGCCGATGGTGTCCGACGCTCCCGCAC
1 ATCCAAGGCACAAAAGTGCCGATGGTGTCCGACGCTCCCGCAC
* * * * *
25722676 ATCCAAGGCACCAAGGT-ACGATCCGT-CCCGATCGCTCCTGTCCGATGCTCCCAC
1 ATCCAAGGCACAAAAGTGCCGAT-GGTGTCCGA-CGCT-C---CC---G----CAC
** ** * * * * * *
25722730 AT-CAAAACACCAATGGTACCGATAGTG-CTAGATGCTACTGCAC
1 ATCCAAGGCA-CAAAAGTGCCGATGGTGTC-CGACGCTCCCGCAC
* * * * * **
25722773 ATCGAAGGCCCCAACGTGCCGGTGGTGTCCGACGCTCAAGCAC
1 ATCCAAGGCACAAAAGTGCCGATGGTGTCCGACGCTCCCGCAC
* * * * *
25722816 ATCCAAGGCACCAACGTGCCGATGGTGTCCGACACTCCTGCAA
1 ATCCAAGGCACAAAAGTGCCGATGGTGTCCGACGCTCCCGCAC
* * * * * * **
25722859 ATCTAAGGAACGAAGGTACCGATGGTGTCTGATACTCCCGCAC
1 ATCCAAGGCACAAAAGTGCCGATGGTGTCCGACGCTCCCGCAC
* * * ** *
25722902 ATCCAAGGCATAAAGGTACCGATGGTGTCCGATACTCTCGCAC
1 ATCCAAGGCACAAAAGTGCCGATGGTGTCCGACGCTCCCGCAC
25722945 ATCCAAGGCAC
1 ATCCAAGGCAC
25722956 CAATATACCG
Statistics
Matches: 246, Mismatches: 58, Indels: 38
0.72 0.17 0.11
Matches are distributed among these distances:
42 8 0.03
43 201 0.82
44 5 0.02
47 3 0.01
50 2 0.01
53 5 0.02
54 16 0.07
55 6 0.02
ACGTcount: A:0.26, C:0.32, G:0.24, T:0.18
Consensus pattern (43 bp):
ATCCAAGGCACAAAAGTGCCGATGGTGTCCGACGCTCCCGCAC
Found at i:25722965 original size:43 final size:42
Alignment explanation
Indices: 25722769--25722970 Score: 188
Period size: 43 Copynumber: 4.7 Consensus size: 42
25722759 AGATGCTACT
* * * * * ** *
25722769 GCACATCGAAGGCCCCAACGTGCCGGTGGTGTCCGACGCTCAA
1 GCACATCCAAGGCACCAAGGTACCGATGGTGTCCGATACTC-C
* * *
25722812 GCACATCCAAGGCACCAACGTGCCGATGGTGTCCGACACTCC
1 GCACATCCAAGGCACCAAGGTACCGATGGTGTCCGATACTCC
* * * * *
25722854 TGCAAATCTAAGGAACGAAGGTACCGATGGTGTCTGATACTCCC
1 -GCACATCCAAGGCACCAAGGTACCGATGGTGTCCGATACT-CC
**
25722898 GCACATCCAAGGCATAAAGGTACCGATGGTGTCCGATACTCTC
1 GCACATCCAAGGCACCAAGGTACCGATGGTGTCCGATACTC-C
**
25722941 GCACATCCAAGGCACCAATATACCGATGGT
1 GCACATCCAAGGCACCAAGGTACCGATGGT
25722971 ATCTAGTGCT
Statistics
Matches: 133, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
42 1 0.01
43 130 0.98
44 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.25, T:0.18
Consensus pattern (42 bp):
GCACATCCAAGGCACCAAGGTACCGATGGTGTCCGATACTCC
Found at i:25722995 original size:86 final size:86
Alignment explanation
Indices: 25722813--25722997 Score: 194
Period size: 86 Copynumber: 2.2 Consensus size: 86
25722803 GACGCTCAAG
** * * * * *
25722813 CACATCCAAGGCACCAACGTGCCGATGGTGTCCGACACTCCTGCAAATCTAAGGAACGAAGGTAC
1 CACATCCAAGGCATAAAGGTACCGATGGTGTCCGACACTCCTGCAAATCCAAGGAACCAAGATAC
* *
25722878 CGATGGTGTCTGATACTCCCG
66 CGATGGTATCTGATACTCCCA
* * * *
25722899 CACATCCAAGGCATAAAGGTACCGATGGTGTCCGATACT-CTCGCACATCCAAGGCACCAATATA
1 CACATCCAAGGCATAAAGGTACCGATGGTGTCCGACACTCCT-GCAAATCCAAGGAACCAAGATA
*
25722963 CCGATGGTATCT-AGTGCTCCCA
65 CCGATGGTATCTGA-TACTCCCA
* *
25722985 TACATTCAAGGCA
1 CACATCCAAGGCA
25722998 CCAATGTGTC
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
85 3 0.04
86 78 0.96
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.20
Consensus pattern (86 bp):
CACATCCAAGGCATAAAGGTACCGATGGTGTCCGACACTCCTGCAAATCCAAGGAACCAAGATAC
CGATGGTATCTGATACTCCCA
Found at i:25727510 original size:23 final size:24
Alignment explanation
Indices: 25727466--25727510 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
25727456 GCAGGTTAAG
* *
25727466 AATATAAAATATCAGTGTAAATGA
1 AATATAAAATATCAGAGCAAATGA
*
25727490 AATATAAAA-GTCAGAGCAAAT
1 AATATAAAATATCAGAGCAAAT
25727511 TAATACGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 9 0.50
24 9 0.50
ACGTcount: A:0.56, C:0.07, G:0.13, T:0.24
Consensus pattern (24 bp):
AATATAAAATATCAGAGCAAATGA
Found at i:25728877 original size:43 final size:43
Alignment explanation
Indices: 25728805--25729179 Score: 351
Period size: 43 Copynumber: 9.0 Consensus size: 43
25728795 ATCACTGCCG
* * * *
25728805 AATGCTCCTGCACATCGAAGGCACTAAGGTGTCGATGGTGTCC
1 AATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCC
* ** *
25728848 AATACTCCCGCACATCCAATTCACCAAGGTACCGATGGTGT-C
1 AATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCC
** ** *
25728890 AGACACTCCTACACATCGAAGGCACCAAGGTGCCGATGGTGTCC
1 A-ATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCC
* * *
25728934 GATGCTCCCGCA-ATCCAAGGCACCAAGGTGCCAATGGTGTCT
1 AATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCC
* *
25728976 GATGCTCTCGCACATCCAAGGCACCAAGGTGCCGA---TG--C
1 AATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCC
* * *
25729014 --T--T-CCGCACATCCAAGGCACCAAGGTGTCAATGGGGTCC
1 AATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCC
* * *
25729052 GATGCTCCCCCACATCCAAGGCACCAAGGTGCCAATGGTGTCC
1 AATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCC
* ** * *
25729095 AATGCTCTCGCACATCCAAGGGTCCAAGGTACCGATGGTATCC
1 AATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCC
* * * * *
25729138 AAGGCTTCCACACATCTAAGGCACCAAGGTGCCTATGGTGTC
1 AATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
25729180 TGATGCTCTC
Statistics
Matches: 268, Mismatches: 51, Indels: 26
0.78 0.15 0.08
Matches are distributed among these distances:
33 25 0.09
34 1 0.00
36 2 0.01
38 1 0.00
40 3 0.01
42 41 0.15
43 194 0.72
44 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.19
Consensus pattern (43 bp):
AATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCC
Found at i:25729014 original size:33 final size:33
Alignment explanation
Indices: 25728976--25729039 Score: 112
Period size: 33 Copynumber: 1.9 Consensus size: 33
25728966 AATGGTGTCT
25728976 GATGC-TCTCGCACATCCAAGGCACCAAGGTGCC
1 GATGCTTC-CGCACATCCAAGGCACCAAGGTGCC
25729009 GATGCTTCCGCACATCCAAGGCACCAAGGTG
1 GATGCTTCCGCACATCCAAGGCACCAAGGTG
25729040 TCAATGGGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.25, C:0.34, G:0.25, T:0.16
Consensus pattern (33 bp):
GATGCTTCCGCACATCCAAGGCACCAAGGTGCC
Found at i:25729057 original size:76 final size:75
Alignment explanation
Indices: 25728927--25729084 Score: 244
Period size: 76 Copynumber: 2.1 Consensus size: 75
25728917 AGGTGCCGAT
* * * *
25728927 GGTGTCCGATGCTCCCGCAATCCAAGGCACCAAGGTGCCAATGGTGTCTGATGCTCTCGCACATC
1 GGTG-CCGATGCTCCCGCAATCCAAGGCACCAAGGTGCCAATGGGGTCCGATGCTCCCCCACATC
25728992 CAAGGCACCAA
65 CAAGGCACCAA
* *
25729003 GGTGCCGATGCTTCCGCACATCCAAGGCACCAAGGTGTCAATGGGGTCCGATGCTCCCCCACATC
1 GGTGCCGATGCTCCCGCA-ATCCAAGGCACCAAGGTGCCAATGGGGTCCGATGCTCCCCCACATC
25729068 CAAGGCACCAA
65 CAAGGCACCAA
25729079 GGTGCC
1 GGTGCC
25729085 AATGGTGTCC
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
75 13 0.17
76 62 0.83
ACGTcount: A:0.23, C:0.34, G:0.26, T:0.17
Consensus pattern (75 bp):
GGTGCCGATGCTCCCGCAATCCAAGGCACCAAGGTGCCAATGGGGTCCGATGCTCCCCCACATCC
AAGGCACCAA
Found at i:25729111 original size:119 final size:118
Alignment explanation
Indices: 25728901--25729131 Score: 363
Period size: 119 Copynumber: 1.9 Consensus size: 118
25728891 GACACTCCTA
* * * *
25728901 CACATCGAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCAATCCAAGGCACCAAGGTGCC
1 CACATCCAAGGCACCAAGGTGCCAATGGGGTCCGATGCTCCCCCAATCCAAGGCACCAAGGTGCC
** *
25728966 AATGGTGTCTGATGCTCTCGCACATCCAAGGCACCAAGGTGCCGATGCTTCCG
66 AATGGTGTCCAATGCTCTCGCACATCCAAGGCACCAAGGTACCGATGCTTCCG
*
25729019 CACATCCAAGGCACCAAGGTGTCAATGGGGTCCGATGCTCCCCCACATCCAAGGCACCAAGGTGC
1 CACATCCAAGGCACCAAGGTGCCAATGGGGTCCGATGCTCCCCCA-ATCCAAGGCACCAAGGTGC
**
25729084 CAATGGTGTCCAATGCTCTCGCACATCCAAGGGTCCAAGGTACCGATG
65 CAATGGTGTCCAATGCTCTCGCACATCCAAGGCACCAAGGTACCGATG
25729132 GTATCCAAGG
Statistics
Matches: 102, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
118 40 0.39
119 62 0.61
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.17
Consensus pattern (118 bp):
CACATCCAAGGCACCAAGGTGCCAATGGGGTCCGATGCTCCCCCAATCCAAGGCACCAAGGTGCC
AATGGTGTCCAATGCTCTCGCACATCCAAGGCACCAAGGTACCGATGCTTCCG
Found at i:25729378 original size:43 final size:43
Alignment explanation
Indices: 25729322--25729409 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
25729312 TGTCCGAGGC
* * * ** *
25729322 TCCCGCACGTCCAAGATACCAAGGTGCTTATGCTTCCTGATGG
1 TCCCACACATCCAAGATACCAACGTGCCAATGATTCCTGATGG
* *
25729365 TCCCACACATCCAAGGTACCAACGTGCCAATGATTCTTGATGG
1 TCCCACACATCCAAGATACCAACGTGCCAATGATTCCTGATGG
25729408 TC
1 TC
25729410 TCGAACCACC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (43 bp):
TCCCACACATCCAAGATACCAACGTGCCAATGATTCCTGATGG
Found at i:25730356 original size:129 final size:129
Alignment explanation
Indices: 25730116--25730378 Score: 307
Period size: 129 Copynumber: 2.0 Consensus size: 129
25730106 ACATCAACGA
** * * * * * *
25730116 CACCAAGGTGCTGATGGTGTCTGAGGCTCCCTCACATCTAAGGCTCCAAGGTGTCGATGCTTCCT
1 CACCAAGGTGCCAATGGAGTCCGAGGCTCCATCACATCCAAGGCACCAAGGTGTCGATGATTCCT
* * * ** * *
25730181 GATGGTCTCACACCACCATCTTCCTAAGTTGTCAATGGTGTTCGATGCTCCCGCACAACCAAGG
66 GATGGTCTCACACCACCACCATCCGAAGTTACCAATAGTGTCCGATGCTCCCGCACAACCAAGG
25730245 CACCAAGGTGCCAATGGAGTCCGAGGCTCCAAT-ACATCCAAGGCACCAAGGTGTCGATGATTCC
1 CACCAAGGTGCCAATGGAGTCCGAGGCTCC-ATCACATCCAAGGCACCAAGGTGTCGATGATTCC
* * * *
25730309 T-ATTGGTC-CACCACCACCACCATCCGAAGTTACCGATAGTGTCCGATGCTCTCGCACATCTAA
65 TGA-TGGTCTCA-CACCACCACCATCCGAAGTTACCAATAGTGTCCGATGCTCCCGCACAACCAA
25730372 GG
128 GG
25730374 CACCA
1 CACCA
25730379 TGGTACCGAT
Statistics
Matches: 112, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
128 3 0.03
129 108 0.96
130 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (129 bp):
CACCAAGGTGCCAATGGAGTCCGAGGCTCCATCACATCCAAGGCACCAAGGTGTCGATGATTCCT
GATGGTCTCACACCACCACCATCCGAAGTTACCAATAGTGTCCGATGCTCCCGCACAACCAAGG
Found at i:25730519 original size:86 final size:86
Alignment explanation
Indices: 25730278--25731236 Score: 603
Period size: 86 Copynumber: 11.2 Consensus size: 86
25730268 AGGCTCCAAT
* * * ** * *
25730278 ACATCCAAGGCACCAAGGTGTCGATGATTC-CTATTGGTCCACCACCACCA-CCATCCGAAGTTA
1 ACATCCAAGGCACCAAGGTGCCGATGCTTCTCGA-TGGTCCGTCACCACCATCGA-CCTAAGTTA
*
25730341 CCGATAGTGTCCGATGCTCTCGC
64 CCGATGGTGTCCGATGCTCTCGC
* * * * * ** * *
25730364 ACATCTAAGGCACCATGGTACCGATACTTCCCGATGGTCCCGT-ACCATGATCGGCCTAAATTAC
1 ACATCCAAGGCACCAAGGTGCCGATGCTTCTCGATGGT-CCGTCACCACCATCGACCTAAGTTAC
*
25730428 TGATGGTGTCCGATGCTCTCGC
65 CGATGGTGTCCGATGCTCTCGC
* * * * * * *
25730450 ACATCAAAGGTACCAAGGTGCCGATGCTTCCCGATAGTCCGTCACCCCCATCGACTTATGTTACC
1 ACATCCAAGGCACCAAGGTGCCGATGCTTCTCGATGGTCCGTCACCACCATCGACCTAAGTTACC
* *
25730515 GATGGTGTCCGATACTTTCGC
66 GATGGTGTCCGATGCTCTCGC
** * * * **
25730536 ACAAT-CAAGGCATTAAGGTGCCGACGCTTCCCAATGGTCTCG-CACCACCATCGGGCTAAGTTA
1 AC-ATCCAAGGCACCAAGGTGCCGATGCTTCTCGATGGTC-CGTCACCACCATCGACCTAAGTTA
** *
25730599 TTGATGGTGTTCGATGCT-TC-C
64 CCGATGGTGTCCGATGCTCTCGC
* * * *
25730620 GCA--C--GGTACGAAGGTGTCCG-TGCTTCTCGATGGTCCCG-CACCACCATCCACCTAAGTTA
1 ACATCCAAGGCACCAAGGTG-CCGATGCTTCTCGATGGT-CCGTCACCACCATCGACCTAAGTTA
* *
25730679 CCGATGGTGTCCGGTGCTCCCGC
64 CCGATGGTGTCCGATGCTCTCGC
* * * * * * * * *
25730702 CCAACCAAGGCACCAAGCTGTCTG-TGCTTCCCAATAGTTCCGT-A-CACCAT-TAGCCTATGTT
1 ACATCCAAGGCACCAAGGTG-CCGATGCTTCTCGAT-GGTCCGTCACCACCATCGA-CCTAAGTT
* * * *
25730763 ACCAATGGTGTCCGATACTCCCGT
63 ACCGATGGTGTCCGATGCTCTCGC
* * *
25730787 ACATCCAAGGCACCAAGGTGTCGATGCTTCTCGATGCT-C-TCACTCCATCATCGGA-CTAAGTT
1 ACATCCAAGGCACCAAGGTGCCGATGCTTCTCGATGGTCCGTCA--CCACCATC-GACCTAAGTT
* *
25730849 ACGGATGGTGTTCGATGCTC-CTGC
63 ACCGATGGTGTCCGATGCTCTC-GC
* * *
25730873 ACATCCAAGGCACCAAGGTGCCCG-TGCTTCTTGATGGT-CTTGCACCACCATCAACCTAAGTT-
1 ACATCCAAGGCACCAAGGTG-CCGATGCTTCTCGATGGTCCGT-CACCACCATCGACCTAAGTTA
* * * *
25730935 CTCGATAGTG-CTTGATGTTCTCGA
64 C-CGATGGTGTC-CGATGCTCTCGC
* * * * * *
25730959 ACATCTAAGGCACTAAGGTGCCCATGCATCTCGATGGTCCAG-CACCGCCATCGATCTAAGTTAC
1 ACATCCAAGGCACCAAGGTGCCGATGCTTCTCGATGGTCC-GTCACCACCATCGACCTAAGTTAC
** * * *
25731023 CGATGGTGTTTGATTCTCCCGT
65 CGATGGTGTCCGATGCTCTCGC
* * * ** * * *
25731045 ACATCGAAGGCACCAAGGTGCCCATGCTTCTCGATGGTCCCG-AACCATTATCGGCATAAATTAC
1 ACATCCAAGGCACCAAGGTGCCGATGCTTCTCGATGGT-CCGTCACCACCATCGACCTAAGTTAC
*
25731109 CGATGGTGTCCGATGCTTTCGC
65 CGATGGTGTCCGATGCTCTCGC
* * * *
25731131 ACATCCAAGGCACCAAGGTGTCC-ATGATTCTCGATAGTCCCG-AACCACCATTG-CCATAAGTT
1 ACATCCAAGGCACCAAGGTG-CCGATGCTTCTCGATGGT-CCGTCACCACCATCGACC-TAAGTT
* ** *
25731193 ACCGATCGTACCCGATGCTC-CTGT
63 ACCGATGGTGTCCGATGCTCTC-GC
**
25731217 ACATCCAAGGCGTCAAGGTG
1 ACATCCAAGGCACCAAGGTG
25731237 TGAATGGTGT
Statistics
Matches: 680, Mismatches: 152, Indels: 82
0.74 0.17 0.09
Matches are distributed among these distances:
80 54 0.08
81 5 0.01
82 5 0.01
83 3 0.00
84 7 0.01
85 72 0.11
86 510 0.75
87 21 0.03
88 3 0.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (86 bp):
ACATCCAAGGCACCAAGGTGCCGATGCTTCTCGATGGTCCGTCACCACCATCGACCTAAGTTACC
GATGGTGTCCGATGCTCTCGC
Found at i:25731143 original size:172 final size:171
Alignment explanation
Indices: 25730278--25731236 Score: 672
Period size: 172 Copynumber: 5.6 Consensus size: 171
25730268 AGGCTCCAAT
* * * * * *
25730278 ACATCCAAGGCACCAAGGTGTCGATGATTC-CTATTGGTCCACCACCACCA-CCATCCGAAGTTA
1 ACATCCAAGGCACCAAGGTGTCCATGCTTCTCGA-TGGTCCAGCACCACCATCGA--CTAAGTTA
* * * * * * *
25730341 CCGATAGTGTCCGATGCTCTCGCACATCTAAGGCACCATGGTACCGATACTTCCCGATGGTCCCG
63 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCATGCTTCCCGATGGTCCCG
* * * * *
25730406 TACCATGATCGGCCTAAATTACTGATGGTGTCCGATGCTCTCGC
128 AACCATCATCGGCCTAAGTTACCGATGGTGTCCGATGCTTTCGC
* * * * * *
25730450 ACATCAAAGGTACCAAGGTG-CCGATGCTTCCCGATAGTCC-GTCACCCCCATCGACTTATGTTA
1 ACATCCAAGGCACCAAGGTGTCC-ATGCTTCTCGATGGTCCAG-CACCACCATCGAC-TAAGTTA
* ** ** * * * *
25730513 CCGATGGTGTCCGATACTTTCGCACAAT-CAAGGCATTAAGGTGCCGACGCTTCCCAATGGTCTC
63 CCGATGGTGTCCGATGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCCATGCTTCCCGATGGTCCC
* * * ** *
25730577 GCACCACCATCGGGCTAAGTTATTGATGGTGTTCGATGC-TTC-C
127 GAACCATCATCGGCCTAAGTTACCGATGGTGTCCGATGCTTTCGC
* * * * * *
25730620 GCA--C--GGTACGAAGGTGTCCGTGCTTCTCGATGGTCCCGCACCACCATCCACCTAAGTTACC
1 ACATCCAAGGCACCAAGGTGTCCATGCTTCTCGATGGTCCAGCACCACCATCGA-CTAAGTTACC
* * * * * ** * * * *
25730681 GATGGTGTCCGGTGCTCCCGCCCAACCAAGGCACCAAGCTGTCTGTGCTTCCCAATAGTTCCGTA
65 GATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCATGCTTCCCGATGGTCCCGAA
* ** * * * ** *
25730746 -CACCATTAGCCTATGTTACCAATGGTGTCCGATACTCCCGT
130 CCATCATCGGCCTAAGTTACCGATGGTGTCCGATGCTTTCGC
* * * *
25730787 ACATCCAAGGCACCAAGGTGTCGATGCTTCTCGATGCTCTCA-CTCCATCATCGGACTAAGTTAC
1 ACATCCAAGGCACCAAGGTGTCCATGCTTCTCGATGGTC-CAGCACCACCATC-GACTAAGTTAC
* * * * ** ** *
25730851 GGATGGTGTTCGATGCTCCTGCACATCCAAGGCACCAAGGTGCCCGTGCTTCTTGATGGTCTTGC
64 CGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCATGCTTCCCGATGGTCCCGA
* ** * * *
25730916 ACCACCATCAACCTAAGTT-CTCGATAGTG-CTTGATG-TTCTCGA
129 ACCATCATCGGCCTAAGTTAC-CGATGGTGTC-CGATGCTT-TCGC
* * * * *
25730959 ACATCTAAGGCACTAAGGTGCCCATGCATCTCGATGGTCCAGCACCGCCATCGATCTAAGTTACC
1 ACATCCAAGGCACCAAGGTGTCCATGCTTCTCGATGGTCCAGCACCACCATCGA-CTAAGTTACC
** * * * *
25731024 GATGGTGTTTGATTCTCCCGTACATCGAAGGCACCAAGGTGCCCATGCTTCTCGATGGTCCCGAA
65 GATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCATGCTTCCCGATGGTCCCGAA
* * *
25731089 CCATTATCGGCATAAATTACCGATGGTGTCCGATGCTTTCGC
130 CCATCATCGGCCTAAGTTACCGATGGTGTCCGATGCTTTCGC
* * * * * *
25731131 ACATCCAAGGCACCAAGGTGTCCATGATTCTCGATAGTCCCGAACCACCATTGCCATAAGTTACC
1 ACATCCAAGGCACCAAGGTGTCCATGCTTCTCGATGGTCCAGCACCACCATCGAC-TAAGTTACC
* ** * * **
25731196 GATCGTACCCGATGCTCCTGTACATCCAAGGCGTCAAGGTG
65 GATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
25731237 TGAATGGTGT
Statistics
Matches: 603, Mismatches: 156, Indels: 56
0.74 0.19 0.07
Matches are distributed among these distances:
165 27 0.04
166 90 0.15
167 6 0.01
169 1 0.00
170 3 0.00
171 104 0.17
172 362 0.60
173 10 0.02
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (171 bp):
ACATCCAAGGCACCAAGGTGTCCATGCTTCTCGATGGTCCAGCACCACCATCGACTAAGTTACCG
ATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCATGCTTCCCGATGGTCCCGAAC
CATCATCGGCCTAAGTTACCGATGGTGTCCGATGCTTTCGC
Found at i:25732048 original size:85 final size:86
Alignment explanation
Indices: 25731866--25732148 Score: 270
Period size: 85 Copynumber: 3.3 Consensus size: 86
25731856 AGCACCAATG
* * * *
25731866 TACCGGTGGTGTCCGATGCTCCCGTACATCCAAGGTACC-AGGTGTCGATGGTTCCCAATGGTCT
1 TACCGATGGTGTCCGATGCTCCCGCACATCCAAGGTACCAAGGTATCGATGCTTCCCAATGG--T
* *
25731930 CCCATTGCCA-C--CGTCCTAAGT
64 CCCA-TACCACCATCGACCTAAGT
* * ** *
25731951 TATCGATAGTGTCCGATGCTATCGCACATCCAA-GTACCAAGGTATCGATGCTTCCCGATGGTCC
1 TACCGATGGTGTCCGATGCTCCCGCACATCCAAGGTACCAAGGTATCGATGCTTCCCAATGGTCC
*
25732015 CATACCACCATCGACCTATGT
66 CATACCACCATCGACCTAAGT
* * * * ****
25732036 TACCGATGGTGTCCTATGCTCCCACACTTCCAAGGTACCAAGGTACCGATGCTTTTTTATGGTCC
1 TACCGATGGTGTCCGATGCTCCCGCACATCCAAGGTACCAAGGTATCGATGCTTCCCAATGGTCC
* * **
25732101 CACACCACTATCGGGCTAAGT
66 CATACCACCATCGACCTAAGT
* *
25732122 TATCGATGGTGTCTGATGCTCCCGCAC
1 TACCGATGGTGTCCGATGCTCCCGCAC
25732149 GACACGAAGA
Statistics
Matches: 160, Mismatches: 33, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
82 4 0.03
83 6 0.04
84 5 0.03
85 80 0.50
86 65 0.41
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.27
Consensus pattern (86 bp):
TACCGATGGTGTCCGATGCTCCCGCACATCCAAGGTACCAAGGTATCGATGCTTCCCAATGGTCC
CATACCACCATCGACCTAAGT
Found at i:25732108 original size:86 final size:85
Alignment explanation
Indices: 25731944--25732481 Score: 221
Period size: 86 Copynumber: 6.3 Consensus size: 85
25731934 TTGCCACCGT
* * * ** * * *
25731944 CCTAAGTTATCGATAGTGTCCGATGCTATCGCACATCCAAGTACCAAGGTATCGATGCTTCCCGA
1 CCTAAGTTACCGATGGTGTCTGATGCTCCCACACTTCCAAGTACCAAGGTACCGATGCTTCCCGA
*
25732009 TGGTCCCATACCACCATCGA
66 TGGTCCCACACCACCATCGA
* ***
25732029 CCTATGTTACCGATGGTGTCCT-ATGCTCCCACACTTCCAAGGTACCAAGGTACCGATGCTTTTT
1 CCTAAGTTACCGATGGTGT-CTGATGCTCCCACACTTCCAA-GTACCAAGGTACCGATGCTTCCC
* * *
25732093 TATGGTCCCACACCACTATCGG
64 GATGGTCCCACACCACCATCGA
* * * * * * * ** ** **
25732115 GCTAAGTTATCGATGGTGTCTGATGCTCCCGCA----CGA-CACGAAGATTTCTTTGCTTCTAGA
1 CCTAAGTTACCGATGGTGTCTGATGCTCCCACACTTCCAAGTACCAAGGTACCGATGCTTCCCGA
* *
25732175 TGGTCCCGCACCACCATCAA
66 TGGTCCCACACCACCATCGA
* * * * * * ** ** * * * * **
25732195 TCTTAGTTGCC-ATTGGTGTTTAATGCTCTCGTAAATACAAGGGACCAAGGTACCGGTACTTTTC
1 CCTAAGTTACCGA-TGGTGTCTGATGCTCCCACACTTCCAA-GTACCAAGGTACCGATGCTTCCC
* * *
25732259 GATGGTCCCGCACCACCATTGG
64 GATGGTCCCACACCACCATCGA
* * * * * * * * * * ** * *
25732281 CATATGTTATCGATAGTGTCCGATGCACCCACACATCTATGTCACCATGGTGTCAATGCTTACCG
1 CCTAAGTTACCGATGGTGTCTGATGCTCCCACACTTCCAAGT-ACCAAGGTACCGATGCTTCCCG
** *
25732346 ATGGTCCCGTACCACTATCGA
65 ATGGTCCCACACCACCATCGA
* ** * * * * * *
25732367 GCTAAGTTA-CGAATGGTGTCAAATTCCCCCACACATCCAAGGTACTAAGGTGCCCG-TGCTTCT
1 CCTAAGTTACCG-ATGGTGTCTGATGCTCCCACACTTCCAA-GTACCAAGGT-ACCGATGCTTCC
*
25732430 CGATGATCCCACACCACCATCGA
63 CGATGGTCCCACACCACCATCGA
* * *
25732453 TCTATGTTACCGATGGTGTCAGATGCTCC
1 CCTAAGTTACCGATGGTGTCTGATGCTCC
25732482 TGCACATCTA
Statistics
Matches: 323, Mismatches: 114, Indels: 31
0.69 0.24 0.07
Matches are distributed among these distances:
79 1 0.00
80 53 0.16
82 2 0.01
84 2 0.01
85 35 0.11
86 224 0.69
87 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (85 bp):
CCTAAGTTACCGATGGTGTCTGATGCTCCCACACTTCCAAGTACCAAGGTACCGATGCTTCCCGA
TGGTCCCACACCACCATCGA
Found at i:25733154 original size:86 final size:86
Alignment explanation
Indices: 25733064--25733229 Score: 190
Period size: 86 Copynumber: 1.9 Consensus size: 86
25733054 GGTGCCGATG
* * * * * ** *
25733064 CTTCCAGATGGTCTAACACCACTATCGACCTATGTTGTCGATTATGTTCGATGCT-CTCTTACAT
1 CTTCCAGATAGTCTAACACCACCATCGACCTAGGTTGCCAACGATGTTCGATGCTAC-CGTACAT
25733128 CCAAAGCAACAAGGTGCTTGTA
65 CCAAAGCAACAAGGTGCTTGTA
* ***
25733150 CTTCCCGATAGTCTCGTACCACCATCGACCTAGGTTGCCAACGATGTTCGATGCTACCGTACATC
1 CTTCCAGATAGTCTAACACCACCATCGACCTAGGTTGCCAACGATGTTCGATGCTACCGTACATC
* *
25733215 CAAGGCACCAAGGTG
66 CAAAGCAACAAGGTG
25733230 TCGGTGGTGT
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
86 64 0.98
87 1 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (86 bp):
CTTCCAGATAGTCTAACACCACCATCGACCTAGGTTGCCAACGATGTTCGATGCTACCGTACATC
CAAAGCAACAAGGTGCTTGTA
Found at i:25733246 original size:43 final size:43
Alignment explanation
Indices: 25733198--25733363 Score: 224
Period size: 43 Copynumber: 3.9 Consensus size: 43
25733188 CAACGATGTT
* * * * *
25733198 CGATGCTACCGTACATCCAAGGCACCAAGGTGTCGGTGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATAGTGTC
* * *
25733241 CGATGCTCCTGCACATCCAAAGTACCAAGGTGCCGATAGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATAGTGTC
*
25733284 CGAAGCTCCCGCACATCCAAGGCACCAAGGTGCCGATAGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATAGTGTC
* * *
25733327 CGAGGCTCCCGCACATCCAAGGCATCAAGGTGTCGAT
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGAT
25733364 GGTTCCCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 108 1.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (43 bp):
CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATAGTGTC
Found at i:25733462 original size:86 final size:86
Alignment explanation
Indices: 25733316--25733507 Score: 213
Period size: 86 Copynumber: 2.2 Consensus size: 86
25733306 CACCAAGGTG
* * * * * *
25733316 CCGATAGTGTCCGAGGCTCCCGCACATCCAAGGCATCAAGGTGTCGATGGTTCCCAATGGTCTCG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTATCGATGCTTCCCAATGGTCTCA
* *
25733381 TACCGCCATCGTCCTAAATTA
66 TACCACCATCGACCTAAATTA
** ****
25733402 CCGATGGTGTCCGATGCTTTCGCACATCCAAGGCACCAAGGTATCGATGCTTTTTGATGGTCTCA
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTATCGATGCTTCCCAATGGTCTCA
* * *
25733467 TACCACTATCGAGCTAAGTTA
66 TACCACCATCGACCTAAATTA
* *
25733488 CTGATGGTGTCTGATGCTCC
1 CCGATGGTGTCCGATGCTCC
25733508 ACACGGCACG
Statistics
Matches: 85, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.27
Consensus pattern (86 bp):
CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTATCGATGCTTCCCAATGGTCTCA
TACCACCATCGACCTAAATTA
Found at i:25733850 original size:86 final size:85
Alignment explanation
Indices: 25733620--25733951 Score: 235
Period size: 86 Copynumber: 3.9 Consensus size: 85
25733610 CCAGTACTTC
* * * * *
25733620 CCGATGGTCCCGCACCACCATTGGCATATGTTATCGATGGTGTCCGATG-ACTCGCACATTTAAG
1 CCGATGGTCCCGCACCACCATCGACATATGTTATCGATGGTGTCAGATGCTCTCGCACATCTAAG
* * *
25733684 TCACCATGGTGTCAATGCTT
66 GCACCAAGGTGCCAATGCTT
* * * ** *
25733704 ACCGATGGTTCCGCACCACCATCGAGC-TAAGTTGTAAATGGTGTCAGATGCTC-CTACACATCT
1 -CCGATGGTCCCGCACCACCATCGA-CATATGTTATCGATGGTGTCAGATGCTCTC-GCACATCT
* * **
25733767 AAGGCACTAAGTTGCCCGTGCTT
63 AAGGCACCAAGGTGCCAATGCTT
* ** * *
25733790 CTCGATGGTCCCACACCACCATCGATTTATGTTATCGATGGTGTCAGATGCTCTCGCACATCCAG
1 C-CGATGGTCCCGCACCACCATCGACATATGTTATCGATGGTGTCAGATGCTCTCGCACATCTAA
* * *
25733855 GGCATCAAGGTACCAAT-ATAT
65 GGCACCAAGGTGCCAATGCT-T
* * * * * * * * *
25733876 CCAGATGG-CCTTGCACCACCATCGGCCTATGTTACCGATGCTATTCA-ATGCTCCCGTACATCC
1 CC-GATGGTCC-CGCACCACCATCGACATATGTTATCGATGGT-GTCAGATGCTCTCGCACATCT
25733939 AAGGCACCAAGGT
63 AAGGCACCAAGGT
25733952 ACTGATGCTA
Statistics
Matches: 190, Mismatches: 47, Indels: 19
0.74 0.18 0.07
Matches are distributed among these distances:
85 45 0.24
86 141 0.74
87 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (85 bp):
CCGATGGTCCCGCACCACCATCGACATATGTTATCGATGGTGTCAGATGCTCTCGCACATCTAAG
GCACCAAGGTGCCAATGCTT
Found at i:25733982 original size:43 final size:43
Alignment explanation
Indices: 25733908--25734175 Score: 197
Period size: 43 Copynumber: 6.2 Consensus size: 43
25733898 CGGCCTATGT
* * * * *
25733908 TACCGATGCTATTCAATGCTCCCGTACATCCAAGGCACCAAGG
1 TACCGATGCTGTCCGATGCTCTCGCACATCCAAGGCACCAAGG
* * * * *
25733951 TACTGATGCT-ACTCGATGCTCTCGCAGATCCAAGGTACTAAGG
1 TACCGATGCTGTC-CGATGCTCTCGCACATCCAAGGCACCAAGG
* * * * *
25733994 TATCGATGGTGTCCGATGTTCTCGCAAATCCAAGGTACCAAGG
1 TACCGATGCTGTCCGATGCTCTCGCACATCCAAGGCACCAAGG
* *
25734037 TACCAATAG-TGTCCGAAGCTCTCGCACATCCAAGGCACCAAGG
1 TACCGAT-GCTGTCCGATGCTCTCGCACATCCAAGGCACCAAGG
* * ** * *
25734080 TACCGATGGT-TCCCGATGGTCTCGGGC-CA-CCACCG-ATCTAAGT
1 TACCGATGCTGT-CCGATGCTCTC--GCACATCCAAGGCA-CCAAGG
** * *
25734123 TACCGATATTGTCCGATGCTCTTGCACATTCAAGGCACCAAGG
1 TACCGATGCTGTCCGATGCTCTCGCACATCCAAGGCACCAAGG
25734166 TACCGATGCT
1 TACCGATGCT
25734176 TCTCTATGGT
Statistics
Matches: 173, Mismatches: 40, Indels: 24
0.73 0.17 0.10
Matches are distributed among these distances:
41 2 0.01
42 5 0.03
43 158 0.91
44 6 0.03
45 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (43 bp):
TACCGATGCTGTCCGATGCTCTCGCACATCCAAGGCACCAAGG
Found at i:25734136 original size:86 final size:86
Alignment explanation
Indices: 25734037--25734933 Score: 335
Period size: 86 Copynumber: 10.5 Consensus size: 86
25734027 GGTACCAAGG
* * * * *
25734037 TACCAATAGTGTCCGAAGCTCTCGCACATCCAAGGCACCAAGGTACCGATGGTTCCCGATGGTCT
1 TACCGATAGTGTCCGATGCTCTCGCACATCCAAGGCACCAAGGTACCGATGCTTCTCGATGGTCC
*
25734102 CGGGCCACCACCGATCTAAGT
66 CGCGCCACCACCGATCTAAGT
* * * *
25734123 TACCGATATTGTCCGATGCTCTTGCACATTCAAGGCACCAAGGTACCGATGCTTCTCTATGGTCC
1 TACCGATAGTGTCCGATGCTCTCGCACATCCAAGGCACCAAGGTACCGATGCTTCTCGATGGTCC
* * *
25734188 CGCTCCACCATCGGTCTAAGT
66 CGCGCCACCACCGATCTAAGT
** * * * * **
25734209 TGTCGA-AGGTGTCTGATGCTCCCCCACATCCAAGACACCAAGGTGTCGATGCTTCTCGATGGTC
1 TACCGATA-GTGTCCGATGCTCTCGCACATCCAAGGCACCAAGGTACCGATGCTTCTCGATGGTC
* * * *
25734273 CCACACCACCATC-AGCTTATA-T
65 CCGCGCCACCACCGATC-TA-AGT
* * * * *** * *
25734295 TATCGATGGTGTCCGATACACTTATACATCCAAGGCACCAAGGTACCGTTGCTTCCCGATGGTCC
1 TACCGATAGTGTCCGATGCTCTCGCACATCCAAGGCACCAAGGTACCGATGCTTCTCGATGGTCC
* * ** **
25734360 CGCACCACTATTGGGCTAAGT
66 CGCGCCACCACCGATCTAAGT
** * * ** * *** * *
25734381 TGTCGAT-GTTGTCCTATG-T-TC-CTACA--C--GGTATGAATGTTTTTTG-TGCTTGTTGATG
1 TACCGATAG-TGTCCGATGCTCTCGC-ACATCCAAGGCACCAA-G-GTACCGATGCTTCTCGATG
** * *
25734437 GTCCCGTACCACCATCAATCTAAGT
62 GTCCCGCGCCACCACCGATCTAAGT
* * * * * * * *
25734462 TGCTGATGGTGTCCGATGCTCTCGCA-ATACAAAGCACCAAGGTACCGATGCTTTTAGATGATCC
1 TACCGATAGTGTCCGATGCTCTCGCACATCCAAGGCACCAAGGTACCGATGCTTCTCGATGGTCC
* * * *
25734526 CGCACCACAATC-AGCCTATA-T
66 CGCGCCACCACCGA-TCTA-AGT
* * * * * * *
25734547 TACTGAT-GATGTCCAATGCTCCCACACATCCAAGGAACCAAGGTACGGATGCTTCCCGATGGTC
1 TACCGATAG-TGTCCGATGCTCTCGCACATCCAAGGCACCAAGGTACCGATGCTTCTCGATGGTC
*** * *
25734611 CCATACCACCATCGGGT-TAAGT
65 CCGCGCCACCA-CCGATCTAAGT
** * * * * * * ** * * *
25734633 TACAAACAGTGTCTGATACTTTCGCACATTCGAGTTACCAAGGTGCCCG-TGCTTCTTGATGTTC
1 TACCGATAGTGTCCGATGCTCTCGCACATCCAAGGCACCAAGGT-ACCGATGCTTCTCGATGGTC
*** * *
25734697 CCATACCACCATCGACCTAAGT
65 CCGCGCCACCACCGATCTAAGT
*** * ** * * * * * *
25734719 TGTGGATGGTGTCTAATGCTCCCGTATATCCAAGGCACCAAGGTGCCCATTCTT-TCCGATGGTC
1 TACCGATAGTGTCCGATGCTCTCGCACATCCAAGGCACCAAGGTACCGATGCTTCT-CGATGGTC
** * * *
25734783 TTGCACCACCATCGACCTAAGT
65 CCGCGCCACCACCGATCTAAGT
** * * ** *
25734805 TATTGATGGTGTCCGATGCTCTCGTC-CATCCAAGGCACCAAAGTGTCAATGCTTCTCGATGGTC
1 TACCGATAGTGTCCGATGCTCTCG-CACATCCAAGGCACCAAGGTACCGATGCTTCTCGATGGTC
* * * *
25734869 CCTCACCACCATCGACCTAAGT
65 CCGCGCCACCACCGATCTAAGT
* * * *
25734891 TACCAATGGAGTCCGATGCT-TCCGCA-ATCCAAGGTACCAAGGT
1 TACCGATAGTGTCCGATGCTCT-CGCACATCCAAGGCACCAAGGT
25734934 GCCAATGGTA
Statistics
Matches: 604, Mismatches: 172, Indels: 71
0.71 0.20 0.08
Matches are distributed among these distances:
80 5 0.01
81 42 0.07
82 6 0.01
83 3 0.00
84 10 0.02
85 74 0.12
86 457 0.76
87 7 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (86 bp):
TACCGATAGTGTCCGATGCTCTCGCACATCCAAGGCACCAAGGTACCGATGCTTCTCGATGGTCC
CGCGCCACCACCGATCTAAGT
Found at i:25734533 original size:85 final size:86
Alignment explanation
Indices: 25734425--25734600 Score: 187
Period size: 85 Copynumber: 2.1 Consensus size: 86
25734415 ATGTTTTTTG
* * * * * * * * *
25734425 TGCTTGTTGATGGTCCCGTACCACCATCAATCTA-AGTTGCTGATGGTGTCCGATGCTCTCGCA-
1 TGCTTGTTGATGATCCCGCACCACAATCAACCTATA-TTACTGATGATGTCCAATGCTCCCACAC
*
25734488 ATACAAAGCACCAAGGTACCGA
65 ATACAAAGAACCAAGGTACCGA
*
25734510 TGCTT-TTAGATGATCCCGCACCACAATCAGCCTATATTACTGATGATGTCCAATGCTCCCACAC
1 TGCTTGTT-GATGATCCCGCACCACAATCAACCTATATTACTGATGATGTCCAATGCTCCCACAC
* * *
25734574 ATCCAAGGAACCAAGGTACGGA
65 ATACAAAGAACCAAGGTACCGA
25734596 TGCTT
1 TGCTT
25734601 CCCGATGGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
84 2 0.03
85 48 0.65
86 24 0.32
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (86 bp):
TGCTTGTTGATGATCCCGCACCACAATCAACCTATATTACTGATGATGTCCAATGCTCCCACACA
TACAAAGAACCAAGGTACCGA
Found at i:25737437 original size:18 final size:18
Alignment explanation
Indices: 25737408--25737451 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
25737398 AAATGTACTA
25737408 ACAAAT-AAAATGCAATG
1 ACAAATAAAAATGCAATG
25737425 ACAAATAAAAATGCAATG
1 ACAAATAAAAATGCAATG
*
25737443 ACAACTAAA
1 ACAAATAAA
25737452 TGCTATGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.61, C:0.14, G:0.09, T:0.16
Consensus pattern (18 bp):
ACAAATAAAAATGCAATG
Found at i:25747162 original size:86 final size:87
Alignment explanation
Indices: 25747012--25747654 Score: 541
Period size: 86 Copynumber: 7.6 Consensus size: 87
25747002 TAATGCTATC
* * * * * *
25747012 AGTTGCCGATGGTTTTCGATGCTCCCGCACATCGAAGACACCAAGGTG-TCGATGCTTCCCGATG
1 AGTTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCGATGCTTTCCGATG
* * *
25747076 GTCCCACACGACCATCAGCTTA
66 GTCCCACACCACCATCGGCCTA
* * * * *
25747098 AGTTACCGATGGTGTCTGATGCTCTCGCACATCTAAGGCACCAAGGTG-CAGATGCTTTCCGATG
1 AGTTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCGATGCTTTCCGATG
*
25747162 GT-CCAGCACAACCATCGGCCTA
66 GTCCCA-CACCACCATCGGCCTA
* ** * * * * * * *
25747184 TGTTTTCGATGGTGTCCGATGCTCCCCCACATCTAGGGCACCAAAGTG-CCAATGCTTCCCAATG
1 AGTTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCGATGCTTTCCGATG
* *
25747248 GTCCCGCACTACCATCGAG-CTA
66 GTCCCACACCACCATCG-GCCTA
** * * **
25747270 AGTTGCTAATGGTGTCCGATGCTCCCG--CAT----GACACGAAGGTGCCCG-TGC-TTCAAATG
1 AGTTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCGATGCTTTCCGATG
* **
25747327 GTACCGTACCACCATCGGCCTA
66 GTCCCACACCACCATCGGCCTA
* ** * * * *
25747349 AGTTACCGATGGTGTTTGATTCTCTCGTACATCCAAGGCACCAAGGTG-CCGATGCTTTCCGGTG
1 AGTTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCGATGCTTTCCGATG
*
25747413 GTCCCATACCACCATCGGCCTA
66 GTCCCACACCACCATCGGCCTA
* * * ** * *
25747435 TGTTGCCGATGCTATCCGATGCTCTTGCACATCCAAGGTACCAAGGTG-TCGATGC-TTCTCGAT
1 AGTTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCGATGCTTTC-CGAT
** *
25747498 GGTCCTGCATCACCATCGAG-CTA
65 GGTCCCACACCACCATCG-GCCTA
** * *
25747521 AGTTGTTGATGGTGTCCGATGTTCCCGTACATCCAAGGCACCAAGGTGCCCG-TGC-TTCTCGAT
1 AGTTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCGATGCTTTC-CGAT
*
25747584 GGTCCCACACCATCATCGGCCTA
65 GGTCCCACACCACCATCGGCCTA
* * * *
25747607 AGTTGCCGATGGTGTCCAATGCTCCCGTACCTCCATGGCACCAAGGTG
1 AGTTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
25747655 TCGATGGTCC
Statistics
Matches: 447, Mismatches: 93, Indels: 34
0.78 0.16 0.06
Matches are distributed among these distances:
78 1 0.00
79 43 0.10
80 12 0.03
81 5 0.01
84 6 0.01
85 20 0.04
86 354 0.79
87 6 0.01
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.25
Consensus pattern (87 bp):
AGTTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCCGATGCTTTCCGATG
GTCCCACACCACCATCGGCCTA
Found at i:25747539 original size:251 final size:254
Alignment explanation
Indices: 25747028--25747660 Score: 675
Period size: 251 Copynumber: 2.5 Consensus size: 254
25747018 CGATGGTTTT
* *** * *
25747028 CGATGCTCCCGCACATCGAAGACACCAAGGTG-TCGATGCTTCCCGATGGTCCCACACGACCATC
1 CGATGCTCCCG-ACAT---AGACACCAAGGTGCCCG-TGCTTCTAAATGGTACCACACCACCATC
* * * * *
25747092 AGCTTAAGTTACCGATGGTGTCTGATGCTCTCGCACATCTAAGGCACCAAGGTGCAGATGCTTTC
61 GGCCTAAGTTACCGATGGTGTCTGATGCTCTCGTACATCCAAGGCACCAAGGTGCCGATGCTTTC
** * * * *
25747157 CGATGGTCCAGCACAACCATCGGCCTATGTTTTCGATGGTGTCCGATGCTCCCCCACATCTAGGG
126 CGATGGTCCAGCACAACCATCGGCCTATGTTGCCGATGCTATCCGATGCTCCCCCACATCCAAGG
25747222 CACCAAAGTGCCAATGCTTCCCAATGGTCCCGCACTACCATCGAGCTAAGTTGCTAATGGTGTC
191 CACCAAAGTGCCAATGCTTCCCAATGGTCCCGCACTACCATCGAGCTAAGTTGCTAATGGTGTC
* **
25747286 CGATGCTCCCG-CAT-GACACGAAGGTGCCCGTGCTTC-AAATGGTACCGTACCACCATCGGCCT
1 CGATGCTCCCGACATAGACACCAAGGTGCCCGTGCTTCTAAATGGTACCACACCACCATCGGCCT
* * *
25747348 AAGTTACCGATGGTGTTTGATTCTCTCGTACATCCAAGGCACCAAGGTGCCGATGCTTTCCGGTG
66 AAGTTACCGATGGTGTCTGATGCTCTCGTACATCCAAGGCACCAAGGTGCCGATGCTTTCCGATG
* * *** *
25747413 GTCCCA-TACCACCATCGGCCTATGTTGCCGATGCTATCCGATGCTCTTGCACATCCAAGGTACC
131 GT-CCAGCACAACCATCGGCCTATGTTGCCGATGCTATCCGATGCTCCCCCACATCCAAGGCACC
* * * * * * * *
25747477 AAGGTGTCGATGCTTCTCGATGGTCCTGCA-TCACCATCGAGCTAAGTTGTTGATGGTGTC
195 AAAGTGCCAATGCTTCCCAATGGTCCCGCACT-ACCATCGAGCTAAGTTGCTAATGGTGTC
* * ** * *
25747537 CGATGTTCCCGTACATCCAAGGCACCAAGGTGCCCGTGCTTCTCGATGGTCCCACACCATCATCG
1 CGATGCTCCCG-ACAT---AGACACCAAGGTGCCCGTGCTTCTAAATGGTACCACACCACCATCG
* ** * * * *
25747602 GCCTAAGTTGCCGATGGTGTCCAATGCTCCCGTACCTCCATGGCACCAAGGTGTCGATG
62 GCCTAAGTTACCGATGGTGTCTGATGCTCTCGTACATCCAAGGCACCAAGGTGCCGATG
25747661 GTCCAGCACA
Statistics
Matches: 311, Mismatches: 54, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
250 1 0.00
251 185 0.59
252 20 0.06
253 5 0.02
256 3 0.01
257 20 0.06
258 77 0.25
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.24
Consensus pattern (254 bp):
CGATGCTCCCGACATAGACACCAAGGTGCCCGTGCTTCTAAATGGTACCACACCACCATCGGCCT
AAGTTACCGATGGTGTCTGATGCTCTCGTACATCCAAGGCACCAAGGTGCCGATGCTTTCCGATG
GTCCAGCACAACCATCGGCCTATGTTGCCGATGCTATCCGATGCTCCCCCACATCCAAGGCACCA
AAGTGCCAATGCTTCCCAATGGTCCCGCACTACCATCGAGCTAAGTTGCTAATGGTGTC
Found at i:25747632 original size:337 final size:337
Alignment explanation
Indices: 25747012--25747633 Score: 781
Period size: 337 Copynumber: 1.8 Consensus size: 337
25747002 TAATGCTATC
* * *
25747012 AGTTGCCGATGGTTTTCGATGCTCCCGCACATCGAAGACACCAAGGTGTCGATGCTTCCCGATGG
1 AGTTACCGATGGTTTTCGATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGCTTCCCGATGG
* * * * * *
25747077 TCCCACACGACCATCAGCTTAAGTTACCGATGGTGTCTGATGCTCTCGCACATCTAAGGCACCAA
66 TCCCACACCACCATCAGCCTAAGTTACCGATGCTATCCGATGCTCTCGCACATCCAAGGCACCAA
*
25747142 GGTGCAGATGCTTTCCGATGGTCCAGCACAACCATCGGCCTATGTTTTCGATGGTGTCCGATGCT
131 GGTGCAGATGCTTTCCGATGGTCCAGCACAACCATCGGCCTAAGTTTTCGATGGTGTCCGATGCT
* * * *
25747207 CCCCCACATCTAGGGCACCAAAGTGCCAATGCTTCCCAATGGTCCCGCACTACCATCGAGCTAAG
196 CCCCCACATCCAAGGCACCAAAGTGCCAATGCTTCCCAATGGTCCCACACCACCATCGAGCTAAG
* *
25747272 TTGCTAATGGTGTCCGATGCTCCCGCATGACACGAAGGTGCCCGTGCTTCAAATGGTACCGTACC
261 TTGCCAATGGTGTCCAATGCTCCCGCATGACACGAAGGTGCCCGTGCTTCAAATGGTACCGTACC
25747337 ACCATCGGCCTA
326 ACCATCGGCCTA
* * * * * *
25747349 AGTTACCGATGGTGTTT-GATTCTCTCGTACATCCAAGGCACCAAGGTGCCGATGCTTTCCGGTG
1 AGTTACCGATGGT-TTTCGATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGCTTCCCGATG
* * * * * *
25747413 GTCCCATACCACCATCGGCCTATGTTGCCGATGCTATCCGATGCTCTTGCACATCCAAGGTACCA
65 GTCCCACACCACCATCAGCCTAAGTTACCGATGCTATCCGATGCTCTCGCACATCCAAGGCACCA
*
25747478 AGGTGTC-GATGC-TTCTCGATGGTCCTGCATC-ACCATCGAG-CTAAGTTGTT-GATGGTGTCC
130 AGGTG-CAGATGCTTTC-CGATGGTCCAGCA-CAACCATCG-GCCTAAGTT-TTCGATGGTGTCC
* ** * ** * * *
25747538 GATGTTCCCGTACATCCAAGGCACCAAGGTGCCCGTGCTTCTCGATGGTCCCACACCATCATCG-
190 GATGCTCCCCCACATCCAAGGCACCAAAGTGCCAATGCTTCCCAATGGTCCCACACCACCATCGA
*
25747602 GCCTAAGTTGCCGATGGTGTCCAATGCTCCCG
255 G-CTAAGTTGCCAATGGTGTCCAATGCTCCCG
25747634 TACCTCCATG
Statistics
Matches: 239, Mismatches: 39, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
336 4 0.02
337 227 0.95
338 8 0.03
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.25
Consensus pattern (337 bp):
AGTTACCGATGGTTTTCGATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGCTTCCCGATGG
TCCCACACCACCATCAGCCTAAGTTACCGATGCTATCCGATGCTCTCGCACATCCAAGGCACCAA
GGTGCAGATGCTTTCCGATGGTCCAGCACAACCATCGGCCTAAGTTTTCGATGGTGTCCGATGCT
CCCCCACATCCAAGGCACCAAAGTGCCAATGCTTCCCAATGGTCCCACACCACCATCGAGCTAAG
TTGCCAATGGTGTCCAATGCTCCCGCATGACACGAAGGTGCCCGTGCTTCAAATGGTACCGTACC
ACCATCGGCCTA
Found at i:25747804 original size:22 final size:21
Alignment explanation
Indices: 25747763--25747804 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
25747753 TTTATATTTA
*
25747763 TAAAATATAATATAAAAATTC
1 TAAAATATAATAAAAAAATTC
*
25747784 TAAAATATTATTAAAAAAATT
1 TAAAATA-TAATAAAAAAATT
25747805 AAAGAAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
TAAAATATAATAAAAAAATTC
Found at i:25762630 original size:2 final size:2
Alignment explanation
Indices: 25762623--25762658 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
25762613 AATGTATTGA
25762623 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25762659 GAGAGAGAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25766284 original size:145 final size:145
Alignment explanation
Indices: 25766018--25766309 Score: 548
Period size: 145 Copynumber: 2.0 Consensus size: 145
25766008 ATCTAATCTT
25766018 AGAGGTCCTATGTTTGAAAACTTTTACATTTATTTTATTTATTTTTCTCCTCTTAGCAGCAATTG
1 AGAGGTCCTATGTTTGAAAACTTTTACATTTATTTTATTTATTTTTCTCCTCTTAGCAGCAATTG
* * *
25766083 TTGACCATTCTAGAAGGTCAACACCCTCTTGTCATCCAAATATCGCCATAATGGGGGAGATTCTC
66 TTAACCATTCTAGAAGGACAACACCCTCTTGTCATCCAAATATCGCCATAACGGGGGAGATTCTC
25766148 CTTCCTTTTTGTTTG
131 CTTCCTTTTTGTTTG
25766163 AGAGGTCCTATGTTTGAAAACTTTTACATTTATTTTATTTATTTTTCTCCTCTTAGCAGCAATTG
1 AGAGGTCCTATGTTTGAAAACTTTTACATTTATTTTATTTATTTTTCTCCTCTTAGCAGCAATTG
*
25766228 TTAACCATTCTAGAAGGACAACACCCTCTTGTCATCCAAATATTGCCATAACGGGGGAGATTCTC
66 TTAACCATTCTAGAAGGACAACACCCTCTTGTCATCCAAATATCGCCATAACGGGGGAGATTCTC
25766293 CTTCCTTTTTGTTTG
131 CTTCCTTTTTGTTTG
25766308 AG
1 AG
25766310 TCCCCTTGTC
Statistics
Matches: 143, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 143 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (145 bp):
AGAGGTCCTATGTTTGAAAACTTTTACATTTATTTTATTTATTTTTCTCCTCTTAGCAGCAATTG
TTAACCATTCTAGAAGGACAACACCCTCTTGTCATCCAAATATCGCCATAACGGGGGAGATTCTC
CTTCCTTTTTGTTTG
Found at i:25770993 original size:26 final size:26
Alignment explanation
Indices: 25770964--25771013 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
25770954 ACTTGACCCG
25770964 TTGA-CTCGACTCGTTAACTTTGACCA
1 TTGACCTCGA-TCGTTAACTTTGACCA
* *
25770990 TTGACCTTGATCGTTGACTTTGAC
1 TTGACCTCGATCGTTAACTTTGAC
25771014 TGTTAACTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (26 bp):
TTGACCTCGATCGTTAACTTTGACCA
Found at i:25771025 original size:26 final size:25
Alignment explanation
Indices: 25770980--25771064 Score: 89
Period size: 26 Copynumber: 3.3 Consensus size: 25
25770970 CGACTCGTTA
* * * *
25770980 ACTTTGACCATTGACCTTGATCGTTG
1 ACTTTGACCGTTAACTTTGA-CTTTG
* *
25771006 ACTTTGACTGTTAACTTTGACTTTA
1 ACTTTGACCGTTAACTTTGACTTTG
25771031 ACTTTTGACCGTTAACTTTGACTTTG
1 AC-TTTGACCGTTAACTTTGACTTTG
25771057 ACTATTGA
1 ACT-TTGA
25771065 ATTTTTTTTC
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 6 0.12
26 43 0.88
ACGTcount: A:0.22, C:0.19, G:0.15, T:0.44
Consensus pattern (25 bp):
ACTTTGACCGTTAACTTTGACTTTG
Found at i:25771064 original size:13 final size:13
Alignment explanation
Indices: 25771006--25771053 Score: 71
Period size: 13 Copynumber: 3.7 Consensus size: 13
25770996 TTGATCGTTG
25771006 ACTTTGACTGTTA
1 ACTTTGACTGTTA
25771019 ACTTTGACT-TTA
1 ACTTTGACTGTTA
*
25771031 ACTTTTGACCGTTA
1 AC-TTTGACTGTTA
25771045 ACTTTGACT
1 ACTTTGACT
25771054 TTGACTATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 5 0.16
13 21 0.68
14 5 0.16
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (13 bp):
ACTTTGACTGTTA
Found at i:25774969 original size:19 final size:19
Alignment explanation
Indices: 25774945--25774984 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
25774935 CGAGTTGACC
*
25774945 GACCCGATCCATTGACTTT
1 GACCCGACCCATTGACTTT
25774964 GACCCGACCCATTGACTTT
1 GACCCGACCCATTGACTTT
25774983 GA
1 GA
25774985 TCATTGATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.28
Consensus pattern (19 bp):
GACCCGACCCATTGACTTT
Found at i:25775022 original size:19 final size:19
Alignment explanation
Indices: 25774975--25775034 Score: 84
Period size: 19 Copynumber: 3.1 Consensus size: 19
25774965 ACCCGACCCA
*
25774975 TTGACTTTGATCATTGATCG
1 TTGACTTTGATCATTGA-CT
* *
25774995 TTAACTTTGACCATTGACT
1 TTGACTTTGATCATTGACT
25775014 TTGACTTTGATCATTGACT
1 TTGACTTTGATCATTGACT
25775033 TT
1 TT
25775035 TTGACCAACC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 20 0.57
20 15 0.43
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.47
Consensus pattern (19 bp):
TTGACTTTGATCATTGACT
Found at i:25785631 original size:5 final size:5
Alignment explanation
Indices: 25785621--25785645 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
25785611 AAAGATTTGG
25785621 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
25785646 AAATGTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:25785686 original size:19 final size:19
Alignment explanation
Indices: 25785664--25785708 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
25785654 TTTTGTTAGG
25785664 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
25785683 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
25785702 ATTTAAT
1 ATTTAAT
25785709 TCATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:25786528 original size:16 final size:16
Alignment explanation
Indices: 25786502--25786542 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
25786492 CACTCCTATT
25786502 TTCTA-TTTCTTTTAA
1 TTCTATTTTCTTTTAA
*
25786517 TTCTATTTTCTTTTAT
1 TTCTATTTTCTTTTAA
*
25786533 TTTTATTTTC
1 TTCTATTTTC
25786543 CCTCAGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (16 bp):
TTCTATTTTCTTTTAA
Found at i:25802069 original size:117 final size:117
Alignment explanation
Indices: 25801860--25802091 Score: 376
Period size: 117 Copynumber: 2.0 Consensus size: 117
25801850 GGATTTCGAC
25801860 GAGGGGTGCTACATAAGGCACGATAGCAAGAGGATTCAGCTCCTCAATTTCGCTCATAATAACCT
1 GAGGGGTGCTACATAAGGCACGATAGCAAGAGGATTCAGCTCCTCAATTTCGCTCATAATAACCT
*
25801925 CAGCCTATCTCGAATCAAGTCAAGCTTCTTTAGAACTGGATGCCCCCACAGT
66 CAGCCTAGCTCGAATCAAGTCAAGCTTCTTTAGAACTGGATGCCCCCACAGT
* * *
25801977 GAGGGGTGCTACATAAGGTACGATAGCAAGAGGATTCAGCTCTTCGA-TTCTGCTCATAATAACC
1 GAGGGGTGCTACATAAGGCACGATAGCAAGAGGATTCAGCTCCTCAATTTC-GCTCATAATAACC
* * **
25802041 TCAGCTTAGCTCGAATCAGGTCGGGCTTCTTTAGAACTGGATGCCCCCACA
65 TCAGCCTAGCTCGAATCAAGTCAAGCTTCTTTAGAACTGGATGCCCCCACA
25802092 CTCTCTAGTG
Statistics
Matches: 106, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
116 3 0.03
117 103 0.97
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (117 bp):
GAGGGGTGCTACATAAGGCACGATAGCAAGAGGATTCAGCTCCTCAATTTCGCTCATAATAACCT
CAGCCTAGCTCGAATCAAGTCAAGCTTCTTTAGAACTGGATGCCCCCACAGT
Found at i:25804064 original size:20 final size:21
Alignment explanation
Indices: 25804039--25804077 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25804029 GCAAGGAATT
25804039 TGAAAC-AACAAAAGTAAAAG
1 TGAAACAAACAAAAGTAAAAG
*
25804059 TGAAACAAATAAAAGTAAA
1 TGAAACAAACAAAAGTAAA
25804078 TAAACAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.67, C:0.08, G:0.13, T:0.13
Consensus pattern (21 bp):
TGAAACAAACAAAAGTAAAAG
Found at i:25819301 original size:20 final size:20
Alignment explanation
Indices: 25819276--25819422 Score: 145
Period size: 20 Copynumber: 7.3 Consensus size: 20
25819266 ATGTTGATTA
*
25819276 CTGTTTGCACTTCGGTACCC
1 CTGTTTGCACTTCGGTGCCC
*
25819296 CTGTTTACACTTTC-GTGCCC
1 CTGTTTGCAC-TTCGGTGCCC
*
25819316 CTGTTTGTACTTTC-GTGCCC
1 CTGTTTGCAC-TTCGGTGCCC
* *
25819336 CTGTTTGTAGTTCGGTGCCC
1 CTGTTTGCACTTCGGTGCCC
* *
25819356 TTGTTTGCACTTCGATGCCC
1 CTGTTTGCACTTCGGTGCCC
* * * *
25819376 CTGCTTGCATTTTGATGCCC
1 CTGTTTGCACTTCGGTGCCC
* *
25819396 CTGCTTGCACTTTGGTGCCC
1 CTGTTTGCACTTCGGTGCCC
25819416 CTGTTTG
1 CTGTTTG
25819423 AAAAATCTAA
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
19 3 0.03
20 103 0.94
21 3 0.03
ACGTcount: A:0.07, C:0.31, G:0.22, T:0.40
Consensus pattern (20 bp):
CTGTTTGCACTTCGGTGCCC
Found at i:25819375 original size:60 final size:60
Alignment explanation
Indices: 25819276--25819422 Score: 172
Period size: 60 Copynumber: 2.5 Consensus size: 60
25819266 ATGTTGATTA
* * * *
25819276 CTGTTTGCACTTCGGTACCCCTGTTTACACTTTCGTGCCCCTGTTTGTACTTTCG-TGCCC
1 CTGTTTGCACTTCGGTGCCCCTGTTTGCACTTTCGTGCCCCTGCTTGCA-TTTCGATGCCC
* * * *
25819336 CTGTTTGTAGTTCGGTGCCCTTGTTTGCAC-TTCGATGCCCCTGCTTGCATTTTGATGCCC
1 CTGTTTGCACTTCGGTGCCCCTGTTTGCACTTTCG-TGCCCCTGCTTGCATTTCGATGCCC
* *
25819396 CTGCTTGCACTTTGGTGCCCCTGTTTG
1 CTGTTTGCACTTCGGTGCCCCTGTTTG
25819423 AAAAATCTAA
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
59 8 0.11
60 64 0.89
ACGTcount: A:0.07, C:0.31, G:0.22, T:0.40
Consensus pattern (60 bp):
CTGTTTGCACTTCGGTGCCCCTGTTTGCACTTTCGTGCCCCTGCTTGCATTTCGATGCCC
Found at i:25835524 original size:366 final size:366
Alignment explanation
Indices: 25834852--25835584 Score: 1430
Period size: 366 Copynumber: 2.0 Consensus size: 366
25834842 CCCAATCAAA
25834852 TGGCTTGATGCGTGGTATAAGGGTGTGCTATGGCAGCCCTCGCATCAACCATTTGTTCTTTGCTG
1 TGGCTTGATGCGTGGTATAAGGGTGTGCTATGGCAGCCCTCGCATCAACCATTTGTTCTTTGCTG
25834917 ACGGGCTTCTGTACAAAAAATCAACTTTGAAAAGTCATCTCTCTTTTTTAGCTCCAAGACCTCCA
66 ACGGGCTTCTGTACAAAAAATCAACTTTGAAAAGTCATCTCTCTTTTTTAGCTCCAAGACCTCCA
25834982 GTGCGCAAGGTACTGAGTTTGGGAGACAGATTGGCATGAGCATAGTAGAGAAAATGGAAACTTAC
131 GTGCGCAAGGTACTGAGTTTGGGAGACAGATTGGCATGAGCATAGTAGAGAAAATGGAAACTTAC
*
25835047 CTTGGGCTCTTTATGGTCGTTGGTAAGAATAAGACAAACGCTTTTAGCAAGATGGTTGAAAAAGT
196 CTTAGGCTCTTTATGGTCGTTGGTAAGAATAAGACAAACGCTTTTAGCAAGATGGTTGAAAAAGT
*
25835112 ATCCTCGAGGATCAAGGGGTGGTCGAAGCGGTTGCTCTTGTTCGGTGGCATGGAAGTTTTCTTAA
261 ATCCTCGAGGATCAAGGGGTGGTCGAAGCGGTTGCTCTTATTCGGTGGCATGGAAGTTTTCTTAA
25835177 AAGCTGTCCTACAGTCACTGCAACATACTTCCTATCGGTGT
326 AAGCTGTCCTACAGTCACTGCAACATACTTCCTATCGGTGT
25835218 TGGCTTGATGCGTGGTATAAGGGTGTGCTATGGCAGCCCTCGCATCAACCATTTGTTCTTTGCTG
1 TGGCTTGATGCGTGGTATAAGGGTGTGCTATGGCAGCCCTCGCATCAACCATTTGTTCTTTGCTG
25835283 ACGGGCTTCTGTACAAAAAATCAACTTTGAAAAGTCATCTCTCTTTTTTAGCTCCAAGACCTCCA
66 ACGGGCTTCTGTACAAAAAATCAACTTTGAAAAGTCATCTCTCTTTTTTAGCTCCAAGACCTCCA
25835348 GTGCGCAAGGTACTGAGTTTGGGAGACAGATTGGCATGAGCATAGTAGAGAAAATGGAAACTTAC
131 GTGCGCAAGGTACTGAGTTTGGGAGACAGATTGGCATGAGCATAGTAGAGAAAATGGAAACTTAC
*
25835413 CTTAGGCTCTTTATGGTCGTTGGTAAGAATAAGACAAACGCTTTTAGCAAGATGGTTGATAAAGT
196 CTTAGGCTCTTTATGGTCGTTGGTAAGAATAAGACAAACGCTTTTAGCAAGATGGTTGAAAAAGT
*
25835478 ATCCTCGAGGATCAAGGGGTGGTTGAAGCGGTTGCTCTTATTCGGTGGCATGGAAGTTTTCTTAA
261 ATCCTCGAGGATCAAGGGGTGGTCGAAGCGGTTGCTCTTATTCGGTGGCATGGAAGTTTTCTTAA
25835543 AAGCTGTCCTACAGTCACTGCAACATACTTCCTATCGGTGT
326 AAGCTGTCCTACAGTCACTGCAACATACTTCCTATCGGTGT
25835584 T
1 T
25835585 CCTTCTTCCC
Statistics
Matches: 363, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
366 363 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (366 bp):
TGGCTTGATGCGTGGTATAAGGGTGTGCTATGGCAGCCCTCGCATCAACCATTTGTTCTTTGCTG
ACGGGCTTCTGTACAAAAAATCAACTTTGAAAAGTCATCTCTCTTTTTTAGCTCCAAGACCTCCA
GTGCGCAAGGTACTGAGTTTGGGAGACAGATTGGCATGAGCATAGTAGAGAAAATGGAAACTTAC
CTTAGGCTCTTTATGGTCGTTGGTAAGAATAAGACAAACGCTTTTAGCAAGATGGTTGAAAAAGT
ATCCTCGAGGATCAAGGGGTGGTCGAAGCGGTTGCTCTTATTCGGTGGCATGGAAGTTTTCTTAA
AAGCTGTCCTACAGTCACTGCAACATACTTCCTATCGGTGT
Found at i:25839933 original size:17 final size:16
Alignment explanation
Indices: 25839911--25839955 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
25839901 TGGCAATGTA
25839911 TTTCTTTTCTTTTCTCT
1 TTTCTTTTCTTTTCT-T
25839928 TTTCTTCTTC-TTTCTT
1 TTTCTT-TTCTTTTCTT
25839944 TTTC-TTTCTTTT
1 TTTCTTTTCTTTT
25839956 TGTGATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 3 0.12
15 4 0.15
16 5 0.19
17 11 0.42
18 3 0.12
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTCTTTTCTTTTCTT
Found at i:25839954 original size:10 final size:11
Alignment explanation
Indices: 25839911--25839956 Score: 60
Period size: 10 Copynumber: 4.3 Consensus size: 11
25839901 TGGCAATGTA
25839911 TTTCTTTTCTT
1 TTTCTTTTCTT
25839922 TTCTCTTTTCTT
1 TT-TCTTTTCTT
*
25839934 CTTC-TTTCTT
1 TTTCTTTTCTT
25839944 TTTC-TTTCTT
1 TTTCTTTTCTT
25839954 TTT
1 TTT
25839957 GTGATTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
10 18 0.56
11 4 0.12
12 10 0.31
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTCTTTTCTT
Found at i:25852899 original size:18 final size:19
Alignment explanation
Indices: 25852869--25852904 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
25852859 AATCATCAAA
25852869 TTAACCCCAAAAAGGCAAT
1 TTAACCCCAAAAAGGCAAT
25852888 TTAACCCC-AAAAGGCAA
1 TTAACCCCAAAAAGGCAA
25852905 AATGATTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.47, C:0.28, G:0.11, T:0.14
Consensus pattern (19 bp):
TTAACCCCAAAAAGGCAAT
Found at i:25853412 original size:30 final size:30
Alignment explanation
Indices: 25853370--25853443 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
25853360 TAGTTTATAT
*
25853370 TTTTA-TAATTTTAAAAAATT-AAATAAAAA
1 TTTTATTATTTTTAAAAAATTAAAAT-AAAA
* *
25853399 TTTTATTATTTTTAAAGAATTAAAATATAA
1 TTTTATTATTTTTAAAAAATTAAAATAAAA
*
25853429 TTTTATTATTATTAA
1 TTTTATTATTTTTAA
25853444 TTTAAAATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
29 5 0.13
30 30 0.77
31 4 0.10
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (30 bp):
TTTTATTATTTTTAAAAAATTAAAATAAAA
Found at i:25865276 original size:18 final size:18
Alignment explanation
Indices: 25865253--25865301 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
25865243 TTTATAGTAC
*
25865253 TTATATATTTTTTGAATT
1 TTATATATTTTGTGAATT
25865271 TTATATAATATTTGTGAATT
1 TTATAT-AT-TTTGTGAATT
*
25865291 ATATTATATTT
1 TTA-TATATTT
25865302 GATTTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 6 0.23
19 4 0.15
20 13 0.50
21 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (18 bp):
TTATATATTTTGTGAATT
Found at i:25879601 original size:84 final size:84
Alignment explanation
Indices: 25879447--25879616 Score: 286
Period size: 84 Copynumber: 2.0 Consensus size: 84
25879437 TTCATTAATC
25879447 CCTTTGATCGCAAGAGCACAATCCGTCTCAACTAGAACTTTATTCCATTTAGGATCCCAAGCCAC
1 CCTTTGATCGCAAGAGCACAATCCGTCTCAACTAGAACTTTATTCCATTTAGGATCCCAAGCCAC
25879512 CCGAAGTCCATCATATATA
66 CCGAAGTCCATCATATATA
* * * * *
25879531 CCTTTGATCGCGAGAGCATAATCTGTCTCAACTAGAACTTTATTCCATTTAGGATCCTAAGCTAC
1 CCTTTGATCGCAAGAGCACAATCCGTCTCAACTAGAACTTTATTCCATTTAGGATCCCAAGCCAC
*
25879596 TCGAAGTCCATCATATATA
66 CCGAAGTCCATCATATATA
25879615 CC
1 CC
25879617 CAAAGTTCTG
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (84 bp):
CCTTTGATCGCAAGAGCACAATCCGTCTCAACTAGAACTTTATTCCATTTAGGATCCCAAGCCAC
CCGAAGTCCATCATATATA
Found at i:25888686 original size:11 final size:11
Alignment explanation
Indices: 25888670--25888705 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
25888660 TCCTTCCTTA
25888670 TTTCTTTCTCT
1 TTTCTTTCTCT
25888681 TTTCTTT-TCT
1 TTTCTTTCTCT
25888691 ATTTCTTTCTCT
1 -TTTCTTTCTCT
25888703 TTT
1 TTT
25888706 AATCACTCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 3 0.13
11 17 0.74
12 3 0.13
ACGTcount: A:0.03, C:0.22, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTCTTTCTCT
Found at i:25889252 original size:11 final size:11
Alignment explanation
Indices: 25889213--25889309 Score: 77
Period size: 11 Copynumber: 8.8 Consensus size: 11
25889203 ACCAAGTCAA
*
25889213 ACCGTTGATCG
1 ACCGTTGACCG
**
25889224 ATTGTTGACCG
1 ACCGTTGACCG
* *
25889235 GCTGTTGACCG
1 ACCGTTGACCG
*
25889246 ACCGTTGACTG
1 ACCGTTGACCG
* *
25889257 GCCATTGACCG
1 ACCGTTGACCG
* * *
25889268 ATCATTGACTG
1 ACCGTTGACCG
25889279 ACCGTTGACCG
1 ACCGTTGACCG
**
25889290 ATTGTTGACCG
1 ACCGTTGACCG
25889301 ACCGTTGAC
1 ACCGTTGAC
25889310 TTTTGACCAT
Statistics
Matches: 65, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 65 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.28
Consensus pattern (11 bp):
ACCGTTGACCG
Found at i:25889252 original size:22 final size:22
Alignment explanation
Indices: 25889213--25889309 Score: 95
Period size: 22 Copynumber: 4.4 Consensus size: 22
25889203 ACCAAGTCAA
* *
25889213 ACCGTTGATCGATTGTTGACCG
1 ACCGTTGACCGATCGTTGACCG
* * * *
25889235 GCTGTTGACCGACCGTTGACTG
1 ACCGTTGACCGATCGTTGACCG
* * * *
25889257 GCCATTGACCGATCATTGACTG
1 ACCGTTGACCGATCGTTGACCG
*
25889279 ACCGTTGACCGATTGTTGACCG
1 ACCGTTGACCGATCGTTGACCG
25889301 ACCGTTGAC
1 ACCGTTGAC
25889310 TTTTGACCAT
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 60 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.28
Consensus pattern (22 bp):
ACCGTTGACCGATCGTTGACCG
Found at i:25889352 original size:7 final size:7
Alignment explanation
Indices: 25889305--25889372 Score: 66
Period size: 7 Copynumber: 9.9 Consensus size: 7
25889295 TGACCGACCG
*
25889305 TTGACTT
1 TTGACTA
*
25889312 TTGACCA
1 TTGACTA
*
25889319 TTGACCA
1 TTGACTA
*
25889326 TTGACTG
1 TTGACTA
**
25889333 TTGACCG
1 TTGACTA
25889340 TTGACTA
1 TTGACTA
*
25889347 TTGACTG
1 TTGACTA
25889354 TTGACT-
1 TTGACTA
25889360 TTGACTA
1 TTGACTA
25889367 TTGACT
1 TTGACT
25889373 TTTTGAAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
6 6 0.12
7 46 0.88
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (7 bp):
TTGACTA
Found at i:25889378 original size:21 final size:21
Alignment explanation
Indices: 25889305--25889372 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
25889295 TGACCGACCG
* *
25889305 TTGACTTTTGACCATTGACCA
1 TTGACTGTTGACCATTGACTA
*
25889326 TTGACTGTTGACCGTTGACTA
1 TTGACTGTTGACCATTGACTA
*
25889347 TTGACTGTTGA-CTTTGACTA
1 TTGACTGTTGACCATTGACTA
25889367 TTGACT
1 TTGACT
25889373 TTTTGAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
20 14 0.33
21 29 0.67
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (21 bp):
TTGACTGTTGACCATTGACTA
Found at i:25890461 original size:18 final size:18
Alignment explanation
Indices: 25890434--25890478 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
25890424 AAATTTATAA
25890434 TATT-TTATTG-TATTTAT
1 TATTATTATTGTTA-TTAT
25890451 TATTATTATTGTTATTAT
1 TATTATTATTGTTATTAT
*
25890469 TAGTATTATT
1 TATTATTATT
25890479 TTGATGTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 4 0.16
18 19 0.76
19 2 0.08
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (18 bp):
TATTATTATTGTTATTAT
Found at i:25896978 original size:5 final size:5
Alignment explanation
Indices: 25896968--25897016 Score: 55
Period size: 5 Copynumber: 9.4 Consensus size: 5
25896958 ATTTTGTTTC
*
25896968 TTCTT TTCTT TTCTT TTCTT TTCTCT TTTTCT TTCTT TT-TCT TTCTT
1 TTCTT TTCTT TTCTT TTCTT TTCT-T TTCT-T TTCTT TTCT-T TTCTT
25897015 TT
1 TT
25897017 TCTCATTTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
4 1 0.03
5 28 0.72
6 10 0.26
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTCTT
Found at i:25896999 original size:28 final size:30
Alignment explanation
Indices: 25896968--25897032 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 30
25896958 ATTTTGTTTC
25896968 TTCTTTTC-TTTTCTTT-TCTTTTCTC-TTT
1 TTCTTTTCTTTTTCTTTCT-TTTTCTCATTT
25896996 TTC-TTTCTTTTTCTTTCTTTTTCTCATTT
1 TTCTTTTCTTTTTCTTTCTTTTTCTCATTT
*
25897025 TCCTTTTC
1 TTCTTTTC
25897033 AAGTGACTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 4 0.12
28 18 0.56
29 6 0.19
30 4 0.12
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (30 bp):
TTCTTTTCTTTTTCTTTCTTTTTCTCATTT
Found at i:25897017 original size:10 final size:10
Alignment explanation
Indices: 25896971--25897019 Score: 62
Period size: 10 Copynumber: 4.6 Consensus size: 10
25896961 TTGTTTCTTC
25896971 TTTTCTTTTCT
1 TTTTC-TTTCT
*
25896982 TTTCTTTTCTCT
1 TTT-TCTT-TCT
25896994 TTTTCTTTCT
1 TTTTCTTTCT
25897004 TTTTCTTTCT
1 TTTTCTTTCT
25897014 TTTTCT
1 TTTTCT
25897020 CATTTTCCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 19 0.56
11 8 0.24
12 7 0.21
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:25897628 original size:17 final size:16
Alignment explanation
Indices: 25897608--25897657 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 16
25897598 AACTAAATTA
25897608 ACAAAACAAATGCAATG
1 ACAAAA-AAATGCAATG
25897625 ACAAAGTTAAAATGCAATG
1 ACAAA---AAAATGCAATG
25897644 ACAATAAAAATGCA
1 ACAA-AAAAATGCA
25897658 TGCAAACTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 13 0.45
19 14 0.48
20 2 0.07
ACGTcount: A:0.58, C:0.14, G:0.12, T:0.16
Consensus pattern (16 bp):
ACAAAAAAATGCAATG
Found at i:25926734 original size:18 final size:19
Alignment explanation
Indices: 25926713--25926754 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
25926703 CCAAATGCGA
25926713 TCACAGAACT-AGATGCAG
1 TCACAGAACTCAGATGCAG
*
25926731 TCACA-TACTCAGATGCAG
1 TCACAGAACTCAGATGCAG
*
25926749 CCACAG
1 TCACAG
25926755 GTTCGAATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.36, C:0.29, G:0.19, T:0.17
Consensus pattern (19 bp):
TCACAGAACTCAGATGCAG
Found at i:25947677 original size:24 final size:24
Alignment explanation
Indices: 25947629--25947675 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
25947619 AAGAGTTAAT
25947629 TTGTCAACGCAAATATAAAATAAA
1 TTGTCAACGCAAATATAAAATAAA
*
25947653 TTGTCAGA-GCAAAT-TAAGATAAA
1 TTGTCA-ACGCAAATATAAAATAAA
25947676 ATGAATTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 8 0.38
24 12 0.57
25 1 0.05
ACGTcount: A:0.51, C:0.11, G:0.13, T:0.26
Consensus pattern (24 bp):
TTGTCAACGCAAATATAAAATAAA
Found at i:25987785 original size:12 final size:12
Alignment explanation
Indices: 25987743--25987790 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
25987733 ACTTTGAAAT
* *
25987743 TTTTATTTTTCA
1 TTTTAATTTTAA
*
25987755 TTTTTATTGTTAA
1 TTTTAATT-TTAA
*
25987768 TATTAATTTTAA
1 TTTTAATTTTAA
25987780 TTTTAATTTTA
1 TTTTAATTTTA
25987791 TTGTTATGTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
12 20 0.69
13 9 0.31
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTTAATTTTAA
Found at i:25992741 original size:15 final size:15
Alignment explanation
Indices: 25992693--25992744 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
25992683 TAATTTTCAT
25992693 ATTTAGATTAATTTGC
1 ATTTAGATT-ATTTGC
* *
25992709 A-TTAGGGATCAATTGC
1 ATTTA--GATTATTTGC
25992725 ATTTAGATTATTTGC
1 ATTTAGATTATTTGC
25992740 ATTTA
1 ATTTA
25992745 ATTTTAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
15 16 0.55
16 7 0.24
17 6 0.21
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (15 bp):
ATTTAGATTATTTGC
Found at i:26008664 original size:17 final size:18
Alignment explanation
Indices: 26008627--26008666 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26008617 TAACAGAATG
*
26008627 ATGCGATGACAAAATAAA
1 ATGCAATGACAAAATAAA
*
26008645 ATGCAATGATAAAA-AAA
1 ATGCAATGACAAAATAAA
26008662 ATGCA
1 ATGCA
26008667 TTAAAACTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.57, C:0.10, G:0.15, T:0.17
Consensus pattern (18 bp):
ATGCAATGACAAAATAAA
Found at i:26012244 original size:48 final size:48
Alignment explanation
Indices: 26012173--26012315 Score: 268
Period size: 48 Copynumber: 3.0 Consensus size: 48
26012163 TGAGTTCCTA
*
26012173 TGCTAGCGATCTTAATATGCGATATACCAACTGCTTGCGTTGACATTG
1 TGCTAGCAATCTTAATATGCGATATACCAACTGCTTGCGTTGACATTG
*
26012221 TGCTAGCAATCTTAATATGCGATATACCAACTGCTTACGTTGACATTG
1 TGCTAGCAATCTTAATATGCGATATACCAACTGCTTGCGTTGACATTG
26012269 TGCTAGCAATCTTAATATGCGATATACCAACTGCTTGCGTTGACATT
1 TGCTAGCAATCTTAATATGCGATATACCAACTGCTTGCGTTGACATT
26012316 AGTACAAAAT
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (48 bp):
TGCTAGCAATCTTAATATGCGATATACCAACTGCTTGCGTTGACATTG
Found at i:26046489 original size:7 final size:7
Alignment explanation
Indices: 26046473--26046504 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
26046463 GAAACGAATG
26046473 AAAA-TA
1 AAAAGTA
26046479 AAAAGTA
1 AAAAGTA
26046486 AAAAGT-
1 AAAAGTA
26046492 AAAAGTA
1 AAAAGTA
26046499 AAAAGT
1 AAAAGT
26046505 GCAATGACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 10 0.42
7 14 0.58
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (7 bp):
AAAAGTA
Found at i:26046495 original size:13 final size:13
Alignment explanation
Indices: 26046479--26046504 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26046469 AATGAAAATA
26046479 AAAAGTAAAAAGT
1 AAAAGTAAAAAGT
26046492 AAAAGTAAAAAGT
1 AAAAGTAAAAAGT
26046505 GCAATGACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAAGTAAAAAGT
Found at i:26049899 original size:29 final size:28
Alignment explanation
Indices: 26049835--26049900 Score: 66
Period size: 29 Copynumber: 2.3 Consensus size: 28
26049825 TGTGCTTCAT
26049835 TGTGTGATATTATTATGTGTCGTGATAC
1 TGTGTGATATTATTATGTGTCGTGATAC
26049863 T-TACGTGATATTATGT-TGTG-CTGTGATATC
1 TGT--GTGATATTAT-TATGTGTC-GTGATA-C
26049893 TGTGTGAT
1 TGTGTGAT
26049901 TATAATCTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
27 1 0.03
28 2 0.06
29 25 0.78
30 3 0.09
31 1 0.03
ACGTcount: A:0.20, C:0.08, G:0.26, T:0.47
Consensus pattern (28 bp):
TGTGTGATATTATTATGTGTCGTGATAC
Found at i:26054514 original size:26 final size:26
Alignment explanation
Indices: 26054485--26054548 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
26054475 AAGTATTATT
26054485 TTGAGCTATAGCAATTCACAAACTCC
1 TTGAGCTATAGCAATTCACAAACTCC
*
26054511 TTGAG-TCATAGAAATTCACAAACTCC
1 TTGAGCT-ATAGCAATTCACAAACTCC
* *
26054537 ATGAGCCATAGC
1 TTGAGCTATAGC
26054549 TCTAATCCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 1 0.03
26 31 0.97
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (26 bp):
TTGAGCTATAGCAATTCACAAACTCC
Found at i:26061751 original size:53 final size:53
Alignment explanation
Indices: 26061666--26061858 Score: 269
Period size: 53 Copynumber: 3.6 Consensus size: 53
26061656 GTAAATGCAA
* * * *
26061666 AAAGATCCAATGACTTTGTGTCATCGTGAGTTATATGAATACTCTCACGGATT
1 AAAGGTCCAATGACTCTGTGTCATCGTGAGTTATATGAATCCTATCACGGATT
* *
26061719 AAAGGTCCAATGACTCTGTGTCATCTTGAGTTATATGAATCCTAACACGGATT
1 AAAGGTCCAATGACTCTGTGTCATCGTGAGTTATATGAATCCTATCACGGATT
* ** *
26061772 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATACAAATCCTATTACGGATT
1 AAAGGTCCAATGACTCTGTGTCATCGTGAGTTATATGAATCCTATCACGGATT
* * *
26061825 AAAGGTCCGATGACTCTGTGTTATCATGAGTTAT
1 AAAGGTCCAATGACTCTGTGTCATCGTGAGTTAT
26061859 CAAATGTGAA
Statistics
Matches: 126, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 126 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (53 bp):
AAAGGTCCAATGACTCTGTGTCATCGTGAGTTATATGAATCCTATCACGGATT
Found at i:26066560 original size:17 final size:18
Alignment explanation
Indices: 26066523--26066562 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26066513 ATCAAAAGGG
*
26066523 ATGCAGTGACAAAATAAA
1 ATGCAATGACAAAATAAA
*
26066541 ATGCAATGACAATA-AAA
1 ATGCAATGACAAAATAAA
26066558 ATGCA
1 ATGCA
26066563 TGAAAACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.55, C:0.12, G:0.15, T:0.17
Consensus pattern (18 bp):
ATGCAATGACAAAATAAA
Found at i:26074817 original size:13 final size:14
Alignment explanation
Indices: 26074799--26074828 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26074789 GTCAATGCAA
26074799 TCAGA-GTTAAATG
1 TCAGAGGTTAAATG
26074812 TCAGAGGTTAAATG
1 TCAGAGGTTAAATG
26074826 TCA
1 TCA
26074829 ATGTACTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (14 bp):
TCAGAGGTTAAATG
Found at i:26080407 original size:11 final size:11
Alignment explanation
Indices: 26080391--26080417 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
26080381 TCGTGTGCAA
26080391 CAAAATGAATT
1 CAAAATGAATT
26080402 CAAAATGAATT
1 CAAAATGAATT
26080413 CAAAA
1 CAAAA
26080418 CAAAGCTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (11 bp):
CAAAATGAATT
Found at i:26085435 original size:12 final size:12
Alignment explanation
Indices: 26085418--26085442 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26085408 CATCTCATTC
26085418 TCCTATTTTATT
1 TCCTATTTTATT
26085430 TCCTATTTTATT
1 TCCTATTTTATT
26085442 T
1 T
26085443 ACTTTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (12 bp):
TCCTATTTTATT
Found at i:26092758 original size:24 final size:23
Alignment explanation
Indices: 26092723--26092769 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
26092713 AAGAGTTAAT
26092723 TTGTCAACGCAAATATAAAATAAA
1 TTGTCAACGCAAAT-TAAAATAAA
*
26092747 TTGTCAGA-GCAAATTAAGATAAA
1 TTGTCA-ACGCAAATTAAAATAAA
26092770 AATGAATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 8 0.38
24 12 0.57
25 1 0.05
ACGTcount: A:0.51, C:0.11, G:0.13, T:0.26
Consensus pattern (23 bp):
TTGTCAACGCAAATTAAAATAAA
Found at i:26094933 original size:17 final size:17
Alignment explanation
Indices: 26094889--26094925 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
26094879 CAAATGCTAA
*
26094889 ACAAATAAAATGCAACG
1 ACAACTAAAATGCAACG
*
26094906 ACAACTAAAATGCAATG
1 ACAACTAAAATGCAACG
26094923 ACA
1 ACA
26094926 GTTAAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.57, C:0.19, G:0.11, T:0.14
Consensus pattern (17 bp):
ACAACTAAAATGCAACG
Found at i:26102299 original size:327 final size:325
Alignment explanation
Indices: 26101707--26102362 Score: 1082
Period size: 327 Copynumber: 2.0 Consensus size: 325
26101697 TATTTGAATA
26101707 AAATGGCTAACTTAGGTTATATTTTCTGGATTAGTATGTTGAAATGAATTTTGTCTAGGAGATTA
1 AAATGGCTAACTTAGGTTATATTTTCTGGATTAGTATGTTGAAATGAATTTTGTCTAGGAGATTA
*
26101772 GAACTTAAGTAGGACCACTTGTGACCCCTCCAATATTTCTTGGAAATTAATTTTAACATAATCTT
66 GAACTTAAATAGGACCACTTGTGACCCCTCCAATATTTCTTGGAAATTAATTTTAACATAATCTT
* * *
26101837 CCAAGAAATTATTTCCAAAGTAAGAAAATAAATTTTGTATTTTGAAATTTTCAAATAAAAAAGGG
131 CCAAGAAATTATTTCCAAAGAAAGAAAATAAAATTTGAATTTTGAAATTTTCAAATAAAAAAGGG
*
26101902 TCAATTTTTTATCCAAGTTTTAATTGCAACCCAATTTTGTAAATTATTTTGAGTTCAATGACTTA
196 TCAATTTTTTATCCAAGTTTTAATTGCAACCAAATTTTGTAAATTATTTTGAGTTCAATGACTTA
* * **
26101967 ATTGAATTTTTTGTAAAATTTGATTGTTCCTTTTGTAAATACTAAAATTAGTTGTCTTTTTCTAT
261 ATTGAATTTTTTGTAAAATTTGATTGTTCCTTTTATAAACACTAAAATTAACTGTCTTTTTCTAT
*
26102032 AAATGGCTAACTTAGGTTATATTTTCTGGATTAGTATGTTGAAATGAATTTTGTCTAGGAGATTG
1 AAATGGCTAACTTAGGTTATATTTTCTGGATTAGTATGTTGAAATGAATTTTGTCTAGGAGATTA
* * *
26102097 GAACTTAAATGGGACTGCGCTTGTGACCCCTCCAATCTTTCTTGGAAATTAATTTTAACACT-AT
66 GAACTTAAATAGGAC--CACTTGTGACCCCTCCAATATTTCTTGGAAATTAATTTTAACA-TAAT
* *
26102161 CTTCCACGAAATTATTTCCAAAGAAAGAAAAATAAAATTTGAATTTTGAATTTTTCAAAT-AAAA
128 CTTCCAAGAAATTATTTCCAAAGAAAG-AAAATAAAATTTGAATTTTGAAATTTTCAAATAAAAA
* * *
26102225 AGTGTCAATTTTTTATCGAAGTTTTAATTGCAACCAAATTTTTTAAATTATTTTGAGTTCAATGA
192 AGGGTCAATTTTTTATCCAAGTTTTAATTGCAACCAAATTTTGTAAATTATTTTGAGTTCAATGA
*
26102290 CTTAATTGAATTTTTTGTAAAATTTGATTGTTCCTTTTATAAACACTATAATTAACTGTCTTTTT
257 CTTAATTGAATTTTTTGTAAAATTTGATTGTTCCTTTTATAAACACTAAAATTAACTGTCTTTTT
*
26102355 CTGT
322 CTAT
26102359 AAAT
1 AAAT
26102363 ATTTTTAAAC
Statistics
Matches: 307, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
325 77 0.25
327 200 0.65
328 30 0.10
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (325 bp):
AAATGGCTAACTTAGGTTATATTTTCTGGATTAGTATGTTGAAATGAATTTTGTCTAGGAGATTA
GAACTTAAATAGGACCACTTGTGACCCCTCCAATATTTCTTGGAAATTAATTTTAACATAATCTT
CCAAGAAATTATTTCCAAAGAAAGAAAATAAAATTTGAATTTTGAAATTTTCAAATAAAAAAGGG
TCAATTTTTTATCCAAGTTTTAATTGCAACCAAATTTTGTAAATTATTTTGAGTTCAATGACTTA
ATTGAATTTTTTGTAAAATTTGATTGTTCCTTTTATAAACACTAAAATTAACTGTCTTTTTCTAT
Found at i:26102406 original size:13 final size:13
Alignment explanation
Indices: 26102388--26102422 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
26102378 AATAAAAGTT
26102388 TTTATTTTATTT-A
1 TTTATTTT-TTTCA
26102401 TTTATTTTTTTCA
1 TTTATTTTTTTCA
26102414 TTTATTTTT
1 TTTATTTTT
26102423 AAATTGATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 3 0.14
13 18 0.86
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTATTTTTTTCA
Found at i:26105284 original size:9 final size:8
Alignment explanation
Indices: 26105266--26105308 Score: 50
Period size: 8 Copynumber: 4.9 Consensus size: 8
26105256 TGATGCACTG
26105266 AAAAAGAA
1 AAAAAGAA
26105274 AAAAGAGAA
1 AAAA-AGAA
26105283 AAAAATGAA
1 AAAAA-GAA
26105292 TGAAAAAGAA
1 --AAAAAGAA
26105302 AAAAAGA
1 AAAAAGA
26105309 GCAATGTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
8 12 0.39
9 11 0.35
10 3 0.10
11 5 0.16
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (8 bp):
AAAAAGAA
Found at i:26105314 original size:21 final size:22
Alignment explanation
Indices: 26105273--26105333 Score: 56
Period size: 25 Copynumber: 2.7 Consensus size: 22
26105263 CTGAAAAAGA
26105273 AAAAAGAGAAAAAA-ATGAATG-
1 AAAAAGA-AAAAAAGATGAATGT
26105294 AAAAAGAAAAAAAGA-GCAATGT
1 AAAAAGAAAAAAAGATG-AATGT
26105316 ACTCAAAAGAAAAAAAGA
1 A---AAAAGAAAAAAAGA
26105334 AAAGAGCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
20 7 0.21
21 12 0.35
22 1 0.03
25 14 0.41
ACGTcount: A:0.70, C:0.05, G:0.16, T:0.08
Consensus pattern (22 bp):
AAAAAGAAAAAAAGATGAATGT
Found at i:26118617 original size:15 final size:15
Alignment explanation
Indices: 26118599--26118628 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26118589 TTATTTAGCC
26118599 TTTAATTTTTAGTTT
1 TTTAATTTTTAGTTT
*
26118614 TTTAGTTTTTAGTTT
1 TTTAATTTTTAGTTT
26118629 ATCCGTGTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (15 bp):
TTTAATTTTTAGTTT
Found at i:26123457 original size:23 final size:22
Alignment explanation
Indices: 26123427--26123470 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
26123417 GATTCCTAAA
26123427 AAGGAGAGA-AAGGAAGGTGAGAG
1 AAGGAGAGACAAGG--GGTGAGAG
26123450 AAGGAGAGACAAGGGGTGAGA
1 AAGGAGAGACAAGGGGTGAGA
26123471 TGGAATGGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 9 0.45
24 4 0.20
ACGTcount: A:0.45, C:0.02, G:0.48, T:0.05
Consensus pattern (22 bp):
AAGGAGAGACAAGGGGTGAGAG
Found at i:26132844 original size:38 final size:39
Alignment explanation
Indices: 26132800--26132885 Score: 124
Period size: 38 Copynumber: 2.3 Consensus size: 39
26132790 GTTTTCTTCT
*
26132800 TTTTCTTCTTTGGGCGC-T-CCCCTTGTAATGATGTTTC
1 TTTTCTTCTTTGGGCGCTTCCCCCTAGTAATGATGTTTC
*
26132837 TGTTTCTTCTTTGGGCGCTTCCCCCTAGTCATGATGTTT-
1 T-TTTCTTCTTTGGGCGCTTCCCCCTAGTAATGATGTTTC
26132876 TTTTCTTCTT
1 TTTTCTTCTT
26132886 GTCCTTGTGC
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
37 1 0.02
38 25 0.57
39 2 0.05
40 16 0.36
ACGTcount: A:0.07, C:0.24, G:0.17, T:0.51
Consensus pattern (39 bp):
TTTTCTTCTTTGGGCGCTTCCCCCTAGTAATGATGTTTC
Found at i:26139398 original size:7 final size:7
Alignment explanation
Indices: 26139386--26139413 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
26139376 TAAATAAAAT
26139386 GTGTTGA
1 GTGTTGA
26139393 GTGTTGA
1 GTGTTGA
26139400 GTGTTGA
1 GTGTTGA
26139407 GTGTTGA
1 GTGTTGA
26139414 ATATTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (7 bp):
GTGTTGA
Found at i:26149672 original size:21 final size:22
Alignment explanation
Indices: 26149646--26149687 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
26149636 AATCAAAAAG
26149646 AAAAGAAAAATGAGT-AGAAAC
1 AAAAGAAAAATGAGTAAGAAAC
**
26149667 AAAAGAATCATGAGTAAGAAA
1 AAAAGAAAAATGAGTAAGAAA
26149688 ACATGTAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.64, C:0.05, G:0.19, T:0.12
Consensus pattern (22 bp):
AAAAGAAAAATGAGTAAGAAAC
Found at i:26154110 original size:25 final size:23
Alignment explanation
Indices: 26154061--26154107 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
26154051 ACAATTCATT
* * *
26154061 TTTATCTTAATTTGCTCTGACAA
1 TTTATATTAATTTGCACCGACAA
26154084 TTTATATTATATTTGCACCGACAA
1 TTTATATTA-ATTTGCACCGACAA
26154108 ATTAAATCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.45
Consensus pattern (23 bp):
TTTATATTAATTTGCACCGACAA
Found at i:26167124 original size:21 final size:20
Alignment explanation
Indices: 26167079--26167130 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
26167069 TGTTCTAGTT
*
26167079 CTACCGATACAAGTATGATTT
1 CTACCGATACAAGTATGA-TA
26167100 CTACCGATACAAGTCATGCA-A
1 CTACCGATACAAGT-ATG-ATA
26167121 CTACCGATAC
1 CTACCGATAC
26167131 CAAAAACTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 24 0.86
22 3 0.11
23 1 0.04
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (20 bp):
CTACCGATACAAGTATGATA
Found at i:26171578 original size:17 final size:17
Alignment explanation
Indices: 26171556--26171600 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
26171546 GCATGCATTT
26171556 ATTTTAATTGTCATTGC
1 ATTTTAATTGTCATTGC
*
26171573 ATTTTAGTTGTCATTGC
1 ATTTTAATTGTCATTGC
*
26171590 ATTTTATTTGT
1 ATTTTAATTGT
26171601 TTAGCATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.20, C:0.09, G:0.13, T:0.58
Consensus pattern (17 bp):
ATTTTAATTGTCATTGC
Found at i:26171598 original size:22 final size:21
Alignment explanation
Indices: 26171540--26171598 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 21
26171530 TTTTCGATAG
26171540 TTAGTTG-CA-TGCATTTATT
1 TTAGTTGTCATTGCATTTATT
*
26171559 TTAATTGTCATTGC----ATT
1 TTAGTTGTCATTGCATTTATT
26171576 TTAGTTGTCATTGCATTTTATT
1 TTAGTTGTCATTGCA-TTTATT
26171598 T
1 T
26171599 GTTTAGCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 11
0.70 0.05 0.25
Matches are distributed among these distances:
17 16 0.52
19 6 0.19
20 2 0.06
21 3 0.10
22 4 0.13
ACGTcount: A:0.20, C:0.10, G:0.14, T:0.56
Consensus pattern (21 bp):
TTAGTTGTCATTGCATTTATT
Found at i:26177428 original size:12 final size:12
Alignment explanation
Indices: 26177403--26177451 Score: 73
Period size: 12 Copynumber: 4.1 Consensus size: 12
26177393 TTTGCTTTTC
*
26177403 TTTCTTGTT-TT
1 TTTCTTGTTGCT
26177414 TTTCTTGTTGCT
1 TTTCTTGTTGCT
26177426 TTTCTTGTTGCT
1 TTTCTTGTTGCT
26177438 TTTCTTGTTTGCT
1 TTTCTTG-TTGCT
26177451 T
1 T
26177452 GAGGACAAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
11 9 0.26
12 20 0.57
13 6 0.17
ACGTcount: A:0.00, C:0.14, G:0.14, T:0.71
Consensus pattern (12 bp):
TTTCTTGTTGCT
Found at i:26177445 original size:24 final size:24
Alignment explanation
Indices: 26177403--26177451 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 24
26177393 TTTGCTTTTC
*
26177403 TTTCTTGTTTTTTTCTTG-TTGCT
1 TTTCTTGTTCTTTTCTTGTTTGCT
26177426 TTTCTTGTTGCTTTTCTTGTTTGCT
1 TTTCTTGTT-CTTTTCTTGTTTGCT
26177451 T
1 T
26177452 GAGGACAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.39
24 8 0.35
25 6 0.26
ACGTcount: A:0.00, C:0.14, G:0.14, T:0.71
Consensus pattern (24 bp):
TTTCTTGTTCTTTTCTTGTTTGCT
Found at i:26183769 original size:123 final size:123
Alignment explanation
Indices: 26183550--26183830 Score: 375
Period size: 123 Copynumber: 2.3 Consensus size: 123
26183540 CTCTGCTTTA
* * * **
26183550 TTTTGATCC-CTTTCTTTGTATCTCATGAGGAAGATGGGGTTTGAATTTTCACTCACATTGAGCT
1 TTTTGATCCAC-TTCTCTGTATCTCATCAGGAAGATGAGGTTTGAAGCTTCACTCACATTGAGCT
* ** * *
26183614 TCACTTTATTGTTTTGGTTTACTTCTCTGTATCTCATTAGAAAGATGACCGCTTCATTG
65 TCACTTCATTGTTTTGGTCCACTTATCTGTATCTCATTAGAAAGATGACCACTTCATTG
* *
26183673 TTTTGATTCACTTCTCTGTATCTCATCAGGAAGATGAGGTTTGAAGCTTCACTTACATTGAGCTT
1 TTTTGATCCACTTCTCTGTATCTCATCAGGAAGATGAGGTTTGAAGCTTCACTCACATTGAGCTT
** * * *
26183738 GGCTTCATTGTTTTGGTCCACTTATTTGTATCTGATTAGGAAGATGACCACTTCATTG
66 CACTTCATTGTTTTGGTCCACTTATCTGTATCTCATTAGAAAGATGACCACTTCATTG
* *
26183796 TTTTTATCCACTTCTCTGTATCTTATCAGGAAGAT
1 TTTTGATCCACTTCTCTGTATCTCATCAGGAAGAT
26183831 AGGGGTCTTT
Statistics
Matches: 137, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
123 136 0.99
124 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (123 bp):
TTTTGATCCACTTCTCTGTATCTCATCAGGAAGATGAGGTTTGAAGCTTCACTCACATTGAGCTT
CACTTCATTGTTTTGGTCCACTTATCTGTATCTCATTAGAAAGATGACCACTTCATTG
Found at i:26184076 original size:341 final size:337
Alignment explanation
Indices: 26183449--26184108 Score: 961
Period size: 341 Copynumber: 1.9 Consensus size: 337
26183439 TTGAGTTCTG
*
26183449 CTTCATTGTTTTGATCCATTTCTCTGTATCTCATCAGGAAGATGGGCTTTGAAGTTTCACTCTAC
1 CTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGCTTT-AAGTTTCACTCTAC
* * * ** * *
26183514 TCCACTGTAACCTCAGGGATGTTGAGCTCTGCTTTATTTTGATCCCTTTCTTTGTATCTCATGAG
65 TACACTCTAACCTCAGGGATGTTGAGCTCTACTTTATTTTGATCCCTTTCGCTGTATCTCATCAA
* * * ** *
26183579 GAAGATGGGGTTTGAATTTTCACTCACATTGAGCTTCACTTTATTGTTTTGGTTTACTTCTCTGT
130 GAAGATGAGGTTTGAATTTTCACTCACATTGAGCTTCACTTTATTATTTTAGTCCACTTCTCTAT
* * *
26183644 ATCTCATTAGAAAGATGACCGCTTCATTGTTTTGATTCACTTCTCTGTATCTCATCAGGAAGATG
195 ATCTCATAAGAAAGATGACCGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAAGAAGATG
* *
26183709 AGGTTTGAAGCTTCACTTACATTGAGCTTGGCTTCATTGTTTTGGTCCACTTATTTGTATCTGAT
260 AGGTTTGAAGCTTCACTCACATTGAGCTTGGCTTCATTGTTTTGCTCCACTT-TTTGTATCTGAT
26183774 TAGGAAGATGACCA
324 TAGGAAGATGACCA
* *
26183788 CTTCATTGTTTTTATCCACTTCTCTGTATCTTATCAGGAAGATAGGGGTCTTT-AGTTTCACTCT
1 CTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGAT--GGG-CTTTAAGTTTCACTCT
* *
26183852 GCTACACTCTAACC-CAGGGATGTTGAGCTCTACTTCATTATTTTGATCCCTTTCGCTGTATTTC
63 ACTACACTCTAACCTCAGGGATGTTGAGCTCTAC-T--TTATTTTGATCCCTTTCGCTGTATCTC
*
26183916 ATCAAGAAGAT-AGGTTTTAATTTTCACTCACATTGAGCTTCACTTTATTATTTTAGTCCACTTC
125 ATCAAGAAGATGAGGTTTGAATTTTCACTCACATTGAGCTTCACTTTATTATTTTAGTCCACTTC
26183980 TCTATATCTCATCAAG-AAGATGACCGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAAG
190 TCTATATCTCAT-AAGAAAGATGACCGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAAG
* *
26184044 AAGAT-AGGGTTTGAAGTTTCACTCATATTGAGCTTGGCTTCATTGTTTTGCTCCACTTTTTGTA
254 AAGATGA-GGTTTGAAGCTTCACTCACATTGAGCTTGGCTTCATTGTTTTGCTCCACTTTTTGTA
26184108 T
318 T
26184109 AAGGAAGATA
Statistics
Matches: 287, Mismatches: 26, Indels: 15
0.88 0.08 0.05
Matches are distributed among these distances:
339 58 0.20
340 31 0.11
341 159 0.55
342 39 0.14
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (337 bp):
CTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGCTTTAAGTTTCACTCTACT
ACACTCTAACCTCAGGGATGTTGAGCTCTACTTTATTTTGATCCCTTTCGCTGTATCTCATCAAG
AAGATGAGGTTTGAATTTTCACTCACATTGAGCTTCACTTTATTATTTTAGTCCACTTCTCTATA
TCTCATAAGAAAGATGACCGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAAGAAGATGA
GGTTTGAAGCTTCACTCACATTGAGCTTGGCTTCATTGTTTTGCTCCACTTTTTGTATCTGATTA
GGAAGATGACCA
Found at i:26195771 original size:14 final size:14
Alignment explanation
Indices: 26195732--26195773 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
26195722 TACGAGTAAT
*
26195732 AAATACACAAAATA
1 AAATAAACAAAATA
*
26195746 AATATATA-AAAATA
1 AA-ATAAACAAAATA
26195760 AAATAAACAAAATA
1 AAATAAACAAAATA
26195774 CGCAAAGCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 4 0.17
14 16 0.67
15 4 0.17
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAACAAAATA
Found at i:26196010 original size:30 final size:29
Alignment explanation
Indices: 26195974--26196056 Score: 103
Period size: 31 Copynumber: 2.8 Consensus size: 29
26195964 AAGTATAGGG
*
26195974 GTCAAAATATAATTGTTTGAAAATTTAAGA
1 GTCAAAATATAATT-TTTGAAAATTCAAGA
* *
26196004 GTCAAAACATAATTTTTAGAAAAATTCAAGG
1 GTCAAAATATAATTTTT-G-AAAATTCAAGA
*
26196035 GTTAAAATATAATTTTTGAAAA
1 GTCAAAATATAATTTTTGAAAA
26196057 GTTTGGGGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 7 0.15
30 15 0.33
31 24 0.52
ACGTcount: A:0.48, C:0.05, G:0.12, T:0.35
Consensus pattern (29 bp):
GTCAAAATATAATTTTTGAAAATTCAAGA
Found at i:26196067 original size:30 final size:30
Alignment explanation
Indices: 26195927--26196080 Score: 123
Period size: 30 Copynumber: 5.1 Consensus size: 30
26195917 AAAAACAAAA
* * * *
26195927 TTTTGGAAAGTTT-GGGGGCCAAATTTAAAT
1 TTTTGAAAAGTTTAGGGGTCAAAATAT-AAT
* *
26195957 TTTTGGAAAGTATAGGGGTCAAAATATAAT
1 TTTTGAAAAGTTTAGGGGTCAAAATATAAT
* * *
26195987 TGTTTGAAAA-TTTAAGAGTCAAAACATAAT
1 T-TTTGAAAAGTTTAGGGGTCAAAATATAAT
* * * *
26196017 TTTTAGAAAAATTCAAGGGTTAAAATATAAT
1 TTTT-GAAAAGTTTAGGGGTCAAAATATAAT
* * *
26196048 TTTTGAAAAGTTTGGGGGTTAAAATATCAT
1 TTTTGAAAAGTTTAGGGGTCAAAATATAAT
26196078 TTT
1 TTT
26196081 AAAATAAAAT
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
29 3 0.03
30 62 0.61
31 37 0.36
ACGTcount: A:0.39, C:0.05, G:0.19, T:0.37
Consensus pattern (30 bp):
TTTTGAAAAGTTTAGGGGTCAAAATATAAT
Found at i:26202849 original size:23 final size:23
Alignment explanation
Indices: 26202804--26202846 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
26202794 TATTAAAGTC
* *
26202804 TAAAATACTTTAAAAATACAATT
1 TAAAATACTTCAAAAATAAAATT
26202827 TAAAATA-TTCAAAAATAAAA
1 TAAAATACTTCAAAAATAAAA
26202847 ATTATTAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (23 bp):
TAAAATACTTCAAAAATAAAATT
Found at i:26214845 original size:50 final size:50
Alignment explanation
Indices: 26214778--26214900 Score: 167
Period size: 50 Copynumber: 2.5 Consensus size: 50
26214768 TTAAATTGTT
* *
26214778 TTCAGATCTGATATTTTAAATAAATATAAATATTTACTTAAT-TTGTTTTG
1 TTCAGATCTGGTATTTTAAATAAACATAAATATTTA-TTAATATTGTTTTG
* * *
26214828 TTTAGATCTGGTATTTTACATAAACATAAATATTTATTTATATTGTTTTG
1 TTCAGATCTGGTATTTTAAATAAACATAAATATTTATTAATATTGTTTTG
* *
26214878 TTCAGATCTTGTATTTTATATAA
1 TTCAGATCTGGTATTTTAAATAA
26214901 CTAACATGTT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
49 4 0.06
50 60 0.94
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.51
Consensus pattern (50 bp):
TTCAGATCTGGTATTTTAAATAAACATAAATATTTATTAATATTGTTTTG
Found at i:26216954 original size:17 final size:17
Alignment explanation
Indices: 26216916--26216954 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
26216906 TGCTCATGCT
26216916 GAAAAAAAAAGAGAGAA
1 GAAAAAAAAAGAGAGAA
*
26216933 -AAAAAAGAAAGAGCGAA
1 GAAAAAA-AAAGAGAGAA
26216950 GAAAA
1 GAAAA
26216955 GTTTGCTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 6 0.32
17 9 0.47
18 4 0.21
ACGTcount: A:0.74, C:0.03, G:0.23, T:0.00
Consensus pattern (17 bp):
GAAAAAAAAAGAGAGAA
Found at i:26218309 original size:10 final size:8
Alignment explanation
Indices: 26218276--26218301 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
26218266 TCATCACTCA
26218276 CATTCTCT
1 CATTCTCT
26218284 CATTCTCT
1 CATTCTCT
26218292 CATTCTCT
1 CATTCTCT
26218300 CA
1 CA
26218302 AGTTCTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.38, G:0.00, T:0.46
Consensus pattern (8 bp):
CATTCTCT
Found at i:26229829 original size:23 final size:23
Alignment explanation
Indices: 26229786--26229832 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
26229776 TTAATGTTCG
* *
26229786 TGAACATGTTCGATTAAATTAAA
1 TGAACATATTCGATGAAATTAAA
26229809 TGAACATATTCG-TGAACATTAAA
1 TGAACATATTCGATGAA-ATTAAA
26229832 T
1 T
26229833 AAACGAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.34
Consensus pattern (23 bp):
TGAACATATTCGATGAAATTAAA
Found at i:26234710 original size:20 final size:20
Alignment explanation
Indices: 26234685--26234722 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26234675 GATATGATTC
26234685 TTATAATATTAGAGATTTGA
1 TTATAATATTAGAGATTTGA
* *
26234705 TTATAATCTTAGTGATTT
1 TTATAATATTAGAGATTT
26234723 AATTTGTAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.13, T:0.50
Consensus pattern (20 bp):
TTATAATATTAGAGATTTGA
Found at i:26240429 original size:520 final size:520
Alignment explanation
Indices: 26239448--26240490 Score: 2068
Period size: 520 Copynumber: 2.0 Consensus size: 520
26239438 GAACTAAATC
26239448 AAAACAACACATTGAGTTCTTTATACACTCTCCTGATATCCATGAAATAAGTTGTGAAGGATCTA
1 AAAACAACACATTGAGTTCTTTATACACTCTCCTGATATCCATGAAATAAGTTGTGAAGGATCTA
26239513 TCTTGCTTCTCTAGACAATAGAATGCTTGACACAATTTATACATATGAAAGATATTACCTTTCCT
66 TCTTGCTTCTCTAGACAATAGAATGCTTGACACAATTTATACATATGAAAGATATTACCTTTCCT
26239578 TGAGTATAAAAAGTCCAAATAATCCATTATCTCTTTCACAAACTCACAATGATTGGTCAAAGAAA
131 TGAGTATAAAAAGTCCAAATAATCCATTATCTCTTTCACAAACTCACAATGATTGGTCAAAGAAA
26239643 TTACCTCACTATCAATATAATTGTGAATCTGTAGAAATAGTCCGATATCGTCTCTTAGCCATGTT
196 TTACCTCACTATCAATATAATTGTGAATCTGTAGAAATAGTCCGATATCGTCTCTTAGCCATGTT
26239708 TGCTTTTTTTCATCAGTGGGTGGACCATCAATCAAGTGATTGTCTTTGTCAATGTTTTTCAAATA
261 TGCTTTTTTTCATCAGTGGGTGGACCATCAATCAAGTGATTGTCTTTGTCAATGTTTTTCAAATA
26239773 GATACGGATCGTCTTACTCCAATCAAAATAATTGGTTCCATTGAGCTTATGGTCTGTAATTTTGG
326 GATACGGATCGTCTTACTCCAATCAAAATAATTGGTTCCATTGAGCTTATGGTCTGTAATTTTGG
*
26239838 ACATTATATGATTCATCTCATTCACCTTAACTTTCGTCTCCTCCATTGTATTTCTTAATAAACAA
391 ACATTATATGATTCATCTCATTCACCTTAACTTTCGTCTCCTCCATTGTATTTCTCAATAAACAA
26239903 GAAAATCAAAATCATACTAAATCAAACAATCCAAACCAAGTCAAACATCAACAAAATGGGTCTTG
456 GAAAATCAAAATCATACTAAATCAAACAATCCAAACCAAGTCAAACATCAACAAAATGGGTCTTG
26239968 AAAACAACACATTGAGTTCTTTATACACTCTCCTGATATCCATGAAATAAGTTGTGAAGGATCTA
1 AAAACAACACATTGAGTTCTTTATACACTCTCCTGATATCCATGAAATAAGTTGTGAAGGATCTA
26240033 TCTTGCTTCTCTAGACAATAGAATGCTTGACACAATTTATACATATGAAAGATATTACCTTTCCT
66 TCTTGCTTCTCTAGACAATAGAATGCTTGACACAATTTATACATATGAAAGATATTACCTTTCCT
26240098 TGAGTATAAAAAGTCCAAATAATCCATTATCTCTTTCACAAACTCACAATGATTGGTCAAAGAAA
131 TGAGTATAAAAAGTCCAAATAATCCATTATCTCTTTCACAAACTCACAATGATTGGTCAAAGAAA
*
26240163 TTACCTCACTATCAATATAATTGTGAATCTGTAGAAATAGTCCGGTATCGTCTCTTAGCCATGTT
196 TTACCTCACTATCAATATAATTGTGAATCTGTAGAAATAGTCCGATATCGTCTCTTAGCCATGTT
26240228 TGCTTTTTTTCATCAGTGGGTGGACCATCAATCAAGTGATTGTCTTTGTCAATGTTTTTCAAATA
261 TGCTTTTTTTCATCAGTGGGTGGACCATCAATCAAGTGATTGTCTTTGTCAATGTTTTTCAAATA
26240293 GATACGGATCGTCTTACTCCAATCAAAATAATTGGTTCCATTGAGCTTATGGTCTGTAATTTTGG
326 GATACGGATCGTCTTACTCCAATCAAAATAATTGGTTCCATTGAGCTTATGGTCTGTAATTTTGG
26240358 ACATTATATGATTCATCTCATTCACCTTAACTTTCGTCTCCTCCATTGTATTTCTCAATAAACAA
391 ACATTATATGATTCATCTCATTCACCTTAACTTTCGTCTCCTCCATTGTATTTCTCAATAAACAA
26240423 GAAAATCAAAATCATACTAAATCAAACAATCCAAACCAAGTCAAACATCAACAAAATGGGTCTTG
456 GAAAATCAAAATCATACTAAATCAAACAATCCAAACCAAGTCAAACATCAACAAAATGGGTCTTG
26240488 AAA
1 AAA
26240491 TAGTAACCAA
Statistics
Matches: 521, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
520 521 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (520 bp):
AAAACAACACATTGAGTTCTTTATACACTCTCCTGATATCCATGAAATAAGTTGTGAAGGATCTA
TCTTGCTTCTCTAGACAATAGAATGCTTGACACAATTTATACATATGAAAGATATTACCTTTCCT
TGAGTATAAAAAGTCCAAATAATCCATTATCTCTTTCACAAACTCACAATGATTGGTCAAAGAAA
TTACCTCACTATCAATATAATTGTGAATCTGTAGAAATAGTCCGATATCGTCTCTTAGCCATGTT
TGCTTTTTTTCATCAGTGGGTGGACCATCAATCAAGTGATTGTCTTTGTCAATGTTTTTCAAATA
GATACGGATCGTCTTACTCCAATCAAAATAATTGGTTCCATTGAGCTTATGGTCTGTAATTTTGG
ACATTATATGATTCATCTCATTCACCTTAACTTTCGTCTCCTCCATTGTATTTCTCAATAAACAA
GAAAATCAAAATCATACTAAATCAAACAATCCAAACCAAGTCAAACATCAACAAAATGGGTCTTG
Found at i:26240996 original size:2 final size:2
Alignment explanation
Indices: 26240989--26241015 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26240979 ACACCATCAA
26240989 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
26241016 GGTTAAAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26241791 original size:16 final size:16
Alignment explanation
Indices: 26241770--26241811 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
26241760 AAATCATTTC
26241770 AATTCATTTTTTTTTA
1 AATTCATTTTTTTTTA
**
26241786 AATTCA-AATTTTTTA
1 AATTCATTTTTTTTTA
*
26241801 AATTTATTTTT
1 AATTCATTTTT
26241812 ACCATTTTAA
Statistics
Matches: 20, Mismatches: 5, Indels: 2
0.74 0.19 0.07
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (16 bp):
AATTCATTTTTTTTTA
Found at i:26243104 original size:19 final size:19
Alignment explanation
Indices: 26243077--26243115 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
26243067 ATATTACATA
*
26243077 TTTGAATATTAGATTTATTG
1 TTTGAATATTA-ATTCATTG
26243097 TTTG-ATATTAATTCATTG
1 TTTGAATATTAATTCATTG
26243115 T
1 T
26243116 GTATAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 6 0.33
20 4 0.22
ACGTcount: A:0.28, C:0.03, G:0.13, T:0.56
Consensus pattern (19 bp):
TTTGAATATTAATTCATTG
Found at i:26244565 original size:59 final size:59
Alignment explanation
Indices: 26244440--26244566 Score: 134
Period size: 59 Copynumber: 2.2 Consensus size: 59
26244430 TTGACATTTT
* *
26244440 TTTAATTTGGTACCTAAACTTGACTCTCTTTTTTAAGTTGGTACTTGAATTTTTTGGGA
1 TTTAATTTGGTACCTAAACTTGACTCTCTTTTTTAAGTTGGTACATGAATTTTTTGGAA
** * * * *
26244499 TCCAATTTGGTACTTGAACTTGACTCT-TTTTCTTAATTTGGTACAT-AATCTTTTT-TAA
1 TTTAATTTGGTACCTAAACTTGACTCTCTTTT-TTAAGTTGGTACATGAAT-TTTTTGGAA
26244557 TGTTAATTTG
1 T-TTAATTTG
26244567 TTAAGCATAG
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
58 9 0.16
59 46 0.84
ACGTcount: A:0.23, C:0.13, G:0.14, T:0.50
Consensus pattern (59 bp):
TTTAATTTGGTACCTAAACTTGACTCTCTTTTTTAAGTTGGTACATGAATTTTTTGGAA
Found at i:26244794 original size:60 final size:58
Alignment explanation
Indices: 26244712--26244862 Score: 162
Period size: 60 Copynumber: 2.6 Consensus size: 58
26244702 AATCGAATCT
* * * *
26244712 AAAAAATAGTTTAGGTGCCAAATTAGGAAAAAATACCAAGTTTAGGTATCAAATTGGGTCC
1 AAAAAA-AGTTTAGGTACCAAATTA-GAAAAAATACCAAGTTCAAGTACCAAATTGGGT-C
* ****
26244773 AAAAAAAGTTTAGGTATCAAATTAGAAAAAAGTGTTGAGTTCAAGTACCAAATTGGGTC
1 AAAAAAAGTTTAGGTACCAAATTAGAAAAAA-TACCAAGTTCAAGTACCAAATTGGGTC
*
26244832 AAAAAAA-TTTAAGTACCAAATTA-AAAAAATA
1 AAAAAAAGTTTAGGTACCAAATTAGAAAAAATA
26244863 TATATCAAAT
Statistics
Matches: 77, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
56 1 0.01
57 6 0.08
58 14 0.18
59 15 0.19
60 35 0.45
61 6 0.08
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (58 bp):
AAAAAAAGTTTAGGTACCAAATTAGAAAAAATACCAAGTTCAAGTACCAAATTGGGTC
Found at i:26246348 original size:18 final size:19
Alignment explanation
Indices: 26246327--26246372 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
26246317 TTTAAAGTGA
*
26246327 TTTATTTAAATAT-GATAT
1 TTTATTTAAATATAAATAT
*
26246345 TTTATATAAATATAAATAT
1 TTTATTTAAATATAAATAT
26246364 TTATATTTA
1 TT-TATTTA
26246373 TATGTGTTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 12 0.52
19 6 0.26
20 5 0.22
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TTTATTTAAATATAAATAT
Found at i:26253119 original size:18 final size:18
Alignment explanation
Indices: 26253096--26253140 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
26253086 AAGCATTTTC
26253096 ATTTAAGTATATA-TATAT
1 ATTTAA-TATATATTATAT
*
26253114 ATTTAATATTTATTATAT
1 ATTTAATATATATTATAT
26253132 A-TTAATATA
1 ATTTAATATA
26253141 CTTATTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
ATTTAATATATATTATAT
Done.