Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 86 of 126
Found at i:26594335 original size:30 final size:30
Alignment explanation
Indices: 26594194--26594476 Score: 129
Period size: 29 Copynumber: 9.8 Consensus size: 30
26594184 CCCCTAAATT
26594194 TCCAAAAATTACCATTTTACCCTCGAA-TG
1 TCCAAAAATTACCATTTTACCCTCGAACTG
* * *
26594223 TCCAAAAATT-CTATTTTTGACCC-CAAACTT
1 TCCAAAAATTACCA-TTTT-ACCCTCGAACTG
* * *
26594253 TTCAAAAATTAGCATTTTACCC-C-AAATG
1 TCCAAAAATTACCATTTTACCCTCGAACTG
* *
26594281 TCTAAAAATT-CCATTTTTGA-CCTCGAACTT
1 TCCAAAAATTACCA-TTTT-ACCCTCGAACTG
*** *
26594311 TTTGAAAATTACCATTTTACCCTCGAGC-G
1 TCCAAAAATTACCATTTTACCCTCGAACTG
* * * *
26594340 --CAAAAATT-TCATTTTTGACCC-CAAAATT
1 TCCAAAAATTACCA-TTTT-ACCCTCGAACTG
**
26594368 TCCAAAAACCACCATTTTACCCTC-AGA-TG
1 TCCAAAAATTACCATTTTACCCTCGA-ACTG
* * *
26594397 TTCC-AAAATTA-CATTTTTCCATCG-AGTG
1 -TCCAAAAATTACCATTTTACCCTCGAACTG
* *
26594425 TCC-AAAATTACCATTTTGCCC-CTGAAGTG
1 TCCAAAAATTACCATTTTACCCTC-GAACTG
*
26594454 TTC-AAAATTACCATTTTACCCTC
1 TCCAAAAATTACCATTTTACCCTC
26594477 AGGCATTCGA
Statistics
Matches: 193, Mismatches: 36, Indels: 49
0.69 0.13 0.18
Matches are distributed among these distances:
26 2 0.01
27 26 0.13
28 44 0.23
29 59 0.31
30 56 0.29
31 6 0.03
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.34
Consensus pattern (30 bp):
TCCAAAAATTACCATTTTACCCTCGAACTG
Found at i:26594414 original size:29 final size:30
Alignment explanation
Indices: 26594378--26594478 Score: 92
Period size: 28 Copynumber: 3.6 Consensus size: 30
26594368 TCCAAAAACC
26594378 ACCA-TTTTACCCTCAGATGTTCCAAAATT
1 ACCATTTTTACCCTCAGATGTTCCAAAATT
*
26594407 A-CATTTTT-CCATC-GA-GTGTCCAAAATT
1 ACCATTTTTACCCTCAGATGT-TCCAAAATT
** *
26594434 ACCATTTTGCCCCTGA-AGTGTT-CAAAATT
1 ACCATTTTTACCCTCAGA-TGTTCCAAAATT
26594463 ACCA-TTTTACCCTCAG
1 ACCATTTTTACCCTCAG
26594479 GCATTCGAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
26 2 0.04
27 12 0.21
28 20 0.35
29 20 0.35
30 1 0.02
31 2 0.04
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.35
Consensus pattern (30 bp):
ACCATTTTTACCCTCAGATGTTCCAAAATT
Found at i:26594855 original size:96 final size:96
Alignment explanation
Indices: 26594691--26594882 Score: 253
Period size: 96 Copynumber: 2.0 Consensus size: 96
26594681 AGACCTTTAA
* ** *
26594691 AATCGAGGCAATATTCCTTTATTTTGAGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGTTATT
1 AATCGAGGCAATATTCCTTTATTCTGAGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGAGACT
*
26594756 TTTCTTCAAGTC-AGAATAATCGAATACCCTT
66 TTTCTTCAAATCAAG-ATAATCGAATACCCTT
* * * * *
26594787 AATCGAGGCAATGTTTCTTTATCTCTG-GTTTTGAAAATTTTTGCTTTAACTTACTAGGTGAGAC
1 AATCGAGGCAATATTCCTTTAT-TCTGAGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGAGAC
*
26594851 TTTTCTTCAAATCAAGATAATCGAATATCCTT
65 TTTTCTTCAAATCAAGATAATCGAATACCCTT
26594883 TTCCAAGGTT
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
96 78 0.94
97 5 0.06
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (96 bp):
AATCGAGGCAATATTCCTTTATTCTGAGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGAGACT
TTTCTTCAAATCAAGATAATCGAATACCCTT
Found at i:26601655 original size:106 final size:108
Alignment explanation
Indices: 26601525--26601747 Score: 396
Period size: 107 Copynumber: 2.1 Consensus size: 108
26601515 AATTTACTGA
*
26601525 ATATAGTTTAACGTAATTATAATTATTAATTATAATGATTTTGTTAAATATT-AAAACATGGAAG
1 ATATA-TTTAACGTAATTATAATTATTAATTATAATGATTTCGTTAAATATTAAAAACATGGAAG
*
26601589 TTAATATCCTTTTGGAAAGGATATAATGTTTTAATAAACCTTCC
65 TTAATATCATTTTGGAAAGGATATAATGTTTTAATAAACCTTCC
*
26601633 ATA-ATTTAATGTAATTATAATTATTAATTATAATGATTTCGTTAAATATTAAAAACATGGAAGT
1 ATATATTTAACGTAATTATAATTATTAATTATAATGATTTCGTTAAATATTAAAAACATGGAAGT
26601697 TAATATCATTTTGGAAAGGATATAATGTTTTAATAAACCTTCC
66 TAATATCATTTTGGAAAGGATATAATGTTTTAATAAACCTTCC
26601740 ATATATTT
1 ATATATTT
26601748 CTTTAAATGA
Statistics
Matches: 110, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
106 44 0.40
107 59 0.54
108 7 0.06
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (108 bp):
ATATATTTAACGTAATTATAATTATTAATTATAATGATTTCGTTAAATATTAAAAACATGGAAGT
TAATATCATTTTGGAAAGGATATAATGTTTTAATAAACCTTCC
Found at i:26601820 original size:123 final size:123
Alignment explanation
Indices: 26601677--26601916 Score: 363
Period size: 123 Copynumber: 2.0 Consensus size: 123
26601667 GATTTCGTTA
* *
26601677 AATATTAAAAACATGGAAGTTAATATCATTTTGGAAAGGATATAATGTTTTAATAAACCTTCCAT
1 AATATTAAAAACATGGAAGTTAATATCATTTTGGAAAGGATATAATATTTCAATAAACCTTCCAT
* * *** * *
26601742 ATATTTCTTTAAATGAATATTTTTATTTTAATATGAGATATTATATAAAAGGGAATTG
66 ATATTTCTCTAAAGGAATATTACCATTTTAATATAAGATATTAAATAAAAGGGAATTG
* * * *
26601800 AATATTATAAATATGGAAGTTATTATCTTTTTGGAAAGGATATAATATTTCAATAAACCTTCCAT
1 AATATTAAAAACATGGAAGTTAATATCATTTTGGAAAGGATATAATATTTCAATAAACCTTCCAT
26601865 ATATTTCTCTAAAGGAATATTACCATTTTAATATAAGATATTAAATAAAAGG
66 ATATTTCTCTAAAGGAATATTACCATTTTAATATAAGATATTAAATAAAAGG
26601917 AAATATAGCA
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
123 104 1.00
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (123 bp):
AATATTAAAAACATGGAAGTTAATATCATTTTGGAAAGGATATAATATTTCAATAAACCTTCCAT
ATATTTCTCTAAAGGAATATTACCATTTTAATATAAGATATTAAATAAAAGGGAATTG
Found at i:26602671 original size:33 final size:33
Alignment explanation
Indices: 26602629--26602691 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
26602619 TTATGCCTTA
26602629 AATTGAAAATGATTTTTA-TATAGGGGGAGCTTG
1 AATTGAAAATGATTTTTATTA-AGGGGGAGCTTG
26602662 AATTGAAAATGATTTTTATTAAGGGGGAGC
1 AATTGAAAATGATTTTTATTAAGGGGGAGC
26602692 AATCTATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 27 0.93
34 2 0.07
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (33 bp):
AATTGAAAATGATTTTTATTAAGGGGGAGCTTG
Found at i:26605829 original size:106 final size:107
Alignment explanation
Indices: 26605688--26605908 Score: 363
Period size: 107 Copynumber: 2.1 Consensus size: 107
26605678 TTTACTAAGT
* *
26605688 ATAATTTAACGTAATTATAATTATTAATTATAATGATTTTGTTAAATATT-AAACCATGGAAGTT
1 ATAATTTAACGTAATTATAATTATTAATTATAATGATTTCGTTAAATATTAAAAACATGGAAGTT
* * *
26605752 AATATCTTTTTGGAAAGGATATAATGTTTTAATAAACTTTCC
66 AATATCCTTTTGGAAAGGATATAATATTTTAATAAACCTTCC
*
26605794 ATAATTTAACGTATTTATAATTATTAATTATAATGATTTCGTTAAATATTAAAAACATGGAAGTT
1 ATAATTTAACGTAATTATAATTATTAATTATAATGATTTCGTTAAATATTAAAAACATGGAAGTT
*
26605859 AATATCCTTTTGGAAAGGATATAGTATTTTAATAAACCTTCC
66 AATATCCTTTTGGAAAGGATATAATATTTTAATAAACCTTCC
26605901 ATATATTT
1 ATA-ATTT
26605909 CTTTAAAGGA
Statistics
Matches: 106, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
106 48 0.45
107 54 0.51
108 4 0.04
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (107 bp):
ATAATTTAACGTAATTATAATTATTAATTATAATGATTTCGTTAAATATTAAAAACATGGAAGTT
AATATCCTTTTGGAAAGGATATAATATTTTAATAAACCTTCC
Found at i:26605976 original size:123 final size:123
Alignment explanation
Indices: 26605838--26606204 Score: 610
Period size: 123 Copynumber: 3.0 Consensus size: 123
26605828 GATTTCGTTA
*
26605838 AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAAGGATATAGTATTTTAATAAACCTTCCAT
1 AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAAGGATATAGTGTTTTAATAAACCTTCCAT
26605903 ATATTTCTTTAAAGGAATATTTCCATTTTAATATGAGATATTATATAAAAGGAAATTG
66 ATATTTCTTTAAAGGAATATTTCCATTTTAATATGAGATATTATATAAAAGGAAATTG
*
26605961 AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAAGGATATAGTGTTTTAATTAACCTTCCAT
1 AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAAGGATATAGTGTTTTAATAAACCTTCCAT
* *
26606026 ATATTTCTTTAAAGAAATATTTCCATTTCAATATGAGATATTATATAAAAGGAAATTG
66 ATATTTCTTTAAAGGAATATTTCCATTTTAATATGAGATATTATATAAAAGGAAATTG
* * * * * *
26606084 AATATTATAAACATGGAAGTTAATATACTTTTAGAAAGGATATAATGTATCAATAAACCTTCCAT
1 AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAAGGATATAGTGTTTTAATAAACCTTCCAT
* *
26606149 ATATTT-TTCTAAAGGAATATTTCCATTTTAATATAAGATATTAAATAAAAGGAAAT
66 ATATTTCTT-TAAAGGAATATTTCCATTTTAATATGAGATATTATATAAAAGGAAAT
26606205 ATAGCATAAT
Statistics
Matches: 228, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
122 2 0.01
123 226 0.99
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (123 bp):
AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAAGGATATAGTGTTTTAATAAACCTTCCAT
ATATTTCTTTAAAGGAATATTTCCATTTTAATATGAGATATTATATAAAAGGAAATTG
Found at i:26606026 original size:230 final size:237
Alignment explanation
Indices: 26605732--26606204 Score: 561
Period size: 246 Copynumber: 2.0 Consensus size: 237
26605722 GATTTTGTTA
* * *
26605732 AATATTAAACCATGGAAGTTAATATCTTTTTGGAAAGGATATAATGTTTTAATAAACTTTCCATA
1 AATATTAAAACATGGAAGTTAATATCCTTTTGGAAAGGATATAATGTTTTAATAAACCTTCCATA
* * ** *****
26605797 -A-TTTAACG-TATTT-A-T-AAT-TA-TTAATTATA-ATGATTTCGTTAAATATTAAAAACATG
66 TATTTTAAAGATATTTCATTCAATATAGAT-ATTATATAAAAGGAAATTAAATATTAAAAACATG
* * * * *
26605853 GAAGTTAATATCCTTTTGGAAAGGATATAGTATTTTAATAAACCTTCCATATATTTCTT-TAAAG
130 GAAGTTAATATACTTTTAGAAAGGATATAATATATCAATAAACCTTCCATATATTT-TTCTAAAG
* *
26605917 GAATATTTCCATTTTAATATGAGATATTATATAAAAGGAAATTG
194 GAATATTTCCATTTTAATATAAGATATTAAATAAAAGGAAATTG
* *
26605961 AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAAGGATATAGTGTTTTAATTAACCTTCCAT
1 AATATT-AAAACATGGAAGTTAATATCCTTTTGGAAAGGATATAATGTTTTAATAAACCTTCCAT
*
26606026 ATATTTCTTTAAAGAAATATTTCCATTTCAATATGAGATATTATATAAAAGGAAATTGAATATTA
65 ATA--T-TTTAAAG--ATATTT-CA-TTCAATAT-AGATATTATATAAAAGGAAATTAAATATTA
* *
26606091 TAAACATGGAAGTTAATATACTTTTAGAAAGGATATAATGTATCAATAAACCTTCCATATATTTT
122 AAAACATGGAAGTTAATATACTTTTAGAAAGGATATAATATATCAATAAACCTTCCATATATTTT
26606156 TCTAAAGGAATATTTCCATTTTAATATAAGATATTAAATAAAAGGAAAT
187 TCTAAAGGAATATTTCCATTTTAATATAAGATATTAAATAAAAGGAAAT
26606205 ATAGCATAAT
Statistics
Matches: 201, Mismatches: 24, Indels: 21
0.82 0.10 0.09
Matches are distributed among these distances:
229 6 0.03
230 54 0.27
231 1 0.00
235 6 0.03
238 5 0.02
240 1 0.00
242 1 0.00
243 3 0.01
244 1 0.00
245 9 0.04
246 114 0.57
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (237 bp):
AATATTAAAACATGGAAGTTAATATCCTTTTGGAAAGGATATAATGTTTTAATAAACCTTCCATA
TATTTTAAAGATATTTCATTCAATATAGATATTATATAAAAGGAAATTAAATATTAAAAACATGG
AAGTTAATATACTTTTAGAAAGGATATAATATATCAATAAACCTTCCATATATTTTTCTAAAGGA
ATATTTCCATTTTAATATAAGATATTAAATAAAAGGAAATTG
Found at i:26606101 original size:22 final size:21
Alignment explanation
Indices: 26606063--26606109 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
26606053 TCAATATGAG
26606063 ATATTATATAAAAGGAAATTGA
1 ATATTATATAAAAGGAAATT-A
* *
26606085 ATATTATA-AACATGGAAGTTA
1 ATATTATATAA-AAGGAAATTA
26606106 ATAT
1 ATAT
26606110 ACTTTTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.51, C:0.02, G:0.13, T:0.34
Consensus pattern (21 bp):
ATATTATATAAAAGGAAATTA
Found at i:26607009 original size:20 final size:20
Alignment explanation
Indices: 26606984--26607037 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
26606974 TTGGCTTGGG
* *
26606984 ACTTCTACCGGTAGAACTTC
1 ACTTCTACCGATACAACTTC
26607004 ACTTCTACCGATACAACTTC
1 ACTTCTACCGATACAACTTC
*
26607024 AGTTCTACCGATAC
1 ACTTCTACCGATAC
26607038 CTTGAAGACT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (20 bp):
ACTTCTACCGATACAACTTC
Found at i:26609541 original size:20 final size:20
Alignment explanation
Indices: 26609516--26609569 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
26609506 TTGGCCTGGG
* *
26609516 ACTTCTACCGGTAGAACTTC
1 ACTTCTACCGATACAACTTC
*
26609536 ACTTCTACTGATACAACTTC
1 ACTTCTACCGATACAACTTC
* *
26609556 AGTTCTACTGATAC
1 ACTTCTACCGATAC
26609570 CTTGAAGACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (20 bp):
ACTTCTACCGATACAACTTC
Found at i:26609704 original size:28 final size:30
Alignment explanation
Indices: 26609647--26609704 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
26609637 ATAGTCTGAT
*
26609647 GAGTTCTACCGATACCAAATGAAACCTTTA
1 GAGTTCTACCGATACCAAATGAAACATTTA
* *
26609677 GAGTTCTATCGATA-C-AATGAAGCATTTA
1 GAGTTCTACCGATACCAAATGAAACATTTA
26609705 ATGATAGAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 11 0.44
29 1 0.04
30 13 0.52
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (30 bp):
GAGTTCTACCGATACCAAATGAAACATTTA
Found at i:26616869 original size:12 final size:13
Alignment explanation
Indices: 26616829--26616869 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
26616819 TTCAATTAGA
*
26616829 TTAGTAATTATTT
1 TTAGTAATTAATT
26616842 TTAAGTAATTAA-T
1 TT-AGTAATTAATT
26616855 TTAGTAA-TAATT
1 TTAGTAATTAATT
26616867 TTA
1 TTA
26616870 TCTAATATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 3 0.12
12 9 0.36
13 5 0.20
14 8 0.32
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (13 bp):
TTAGTAATTAATT
Found at i:26626653 original size:25 final size:25
Alignment explanation
Indices: 26626601--26626653 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
26626591 ATATACGAAG
* * *
26626601 AAGGTTTTATAGAGAGTTTACTAAA
1 AAGGCTTTATAGAGAGTTCACCAAA
* *
26626626 AAGGCTTTATAGAGAGTTCGCCACA
1 AAGGCTTTATAGAGAGTTCACCAAA
26626651 AAG
1 AAG
26626654 TCTTGGTTTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (25 bp):
AAGGCTTTATAGAGAGTTCACCAAA
Found at i:26629654 original size:33 final size:33
Alignment explanation
Indices: 26629598--26629663 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
26629588 TGATTCACAT
*
26629598 GTTAAGCATGCTATTAATCTGATTATGACTCGC
1 GTTAAGCATGCTATTAATATGATTATGACTCGC
* * *
26629631 GTTAAGCATG-TCATTATTATGATTCTGATTCGC
1 GTTAAGCATGCT-ATTAATATGATTATGACTCGC
26629664 ATATTAAGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 1 0.04
33 27 0.96
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (33 bp):
GTTAAGCATGCTATTAATATGATTATGACTCGC
Found at i:26629855 original size:49 final size:49
Alignment explanation
Indices: 26629802--26629913 Score: 120
Period size: 49 Copynumber: 2.3 Consensus size: 49
26629792 ACAATTTTTG
* * * *
26629802 GTGGCTTGACCACAATATTTTGTATT-TGGTAG-TATATCTGCATTATCTA
1 GTGGCTTGACCACAATATTCTGT-TTCTGGCAGCTAGA-CTGCAATATCTA
* * *
26629851 GTGGCTCGACCACACTATTCTGTTTCTGGCAGCTCGACTGCAATATCTA
1 GTGGCTTGACCACAATATTCTGTTTCTGGCAGCTAGACTGCAATATCTA
*
26629900 GTGGCTTGTCCACA
1 GTGGCTTGACCACA
26629914 TTTTCTTATG
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
48 2 0.04
49 48 0.92
50 2 0.04
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (49 bp):
GTGGCTTGACCACAATATTCTGTTTCTGGCAGCTAGACTGCAATATCTA
Found at i:26630923 original size:47 final size:47
Alignment explanation
Indices: 26630869--26630963 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 47
26630859 GCTCGGGAAG
* *
26630869 TCATCAAGGTGGGAGTTAACCCAAAATTGGTATTTCCCATTTGTGAA
1 TCATCAAGGTGGGAATTAACCCAAAATTAGTATTTCCCATTTGTGAA
*
26630916 TCATCAAGGTGGGAATTAACCCGAAATTAGTATTTCCCATTTGTGAA
1 TCATCAAGGTGGGAATTAACCCAAAATTAGTATTTCCCATTTGTGAA
26630963 T
1 T
26630964 ACCTTTACCC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (47 bp):
TCATCAAGGTGGGAATTAACCCAAAATTAGTATTTCCCATTTGTGAA
Found at i:26633004 original size:15 final size:15
Alignment explanation
Indices: 26632984--26633033 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
26632974 GATATGATTT
26632984 TTTTTATTTTGTTTA
1 TTTTTATTTTGTTTA
* *
26632999 TTTTTATTATCTTT-
1 TTTTTATTTTGTTTA
26633013 TTCTTTA-TTTGTTTA
1 TT-TTTATTTTGTTTA
*
26633028 ATTTTA
1 TTTTTA
26633034 GTTTATGACA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (15 bp):
TTTTTATTTTGTTTA
Found at i:26635461 original size:20 final size:20
Alignment explanation
Indices: 26635426--26635473 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
26635416 GGACCGACTA
26635426 AAGAAAATGGAGAAAA-CTG
1 AAGAAAATGGAGAAAAGCTG
* *
26635445 ACGAAAGATGGATAAAAGCTG
1 AAGAAA-ATGGAGAAAAGCTG
26635466 AAGAAAAT
1 AAGAAAAT
26635474 TGGACCCGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 5 0.21
20 11 0.46
21 8 0.33
ACGTcount: A:0.56, C:0.06, G:0.25, T:0.12
Consensus pattern (20 bp):
AAGAAAATGGAGAAAAGCTG
Found at i:26644491 original size:52 final size:52
Alignment explanation
Indices: 26644429--26644608 Score: 279
Period size: 52 Copynumber: 3.5 Consensus size: 52
26644419 AAAAGGTACG
* * *
26644429 ATGACTATGTGTCATCGTGAGTATTTGAATCCTTTATGGATTATGAGGTCCA
1 ATGACTATGTGTCATCATGAGTATATGAATCCTTTACGGATTATGAGGTCCA
* *
26644481 ATGACTATGTGTCATAATGAGTATATGAATTCTTTACGGATTATGAGGTCCA
1 ATGACTATGTGTCATCATGAGTATATGAATCCTTTACGGATTATGAGGTCCA
* * *
26644533 ATGACTAAGTGTCATCATGAGTATATGAATCCTTTACGGATTAAGAGGTCCG
1 ATGACTATGTGTCATCATGAGTATATGAATCCTTTACGGATTATGAGGTCCA
*
26644585 ATGACTATGTGTCATCGTGAGTAT
1 ATGACTATGTGTCATCATGAGTAT
26644609 TAAATGAATG
Statistics
Matches: 116, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 116 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (52 bp):
ATGACTATGTGTCATCATGAGTATATGAATCCTTTACGGATTATGAGGTCCA
Found at i:26645384 original size:21 final size:21
Alignment explanation
Indices: 26645360--26645408 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
26645350 ACTTGATTCT
26645360 GTAGAAGAGTCACTTGTATCG
1 GTAGAAGAGTCACTTGTATCG
***
26645381 GTAGACCTGTCACTTGTATCG
1 GTAGAAGAGTCACTTGTATCG
*
26645402 ATAGAAG
1 GTAGAAG
26645409 TCTCCAAAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (21 bp):
GTAGAAGAGTCACTTGTATCG
Found at i:26675803 original size:22 final size:22
Alignment explanation
Indices: 26675775--26675821 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
26675765 ACTCAAGCTC
* *
26675775 TTTTATTTTCTTTTTTTG-TTTG
1 TTTTATTGT-TTTTCTTGTTTTG
26675797 TTTTATTGTTTTTCTTGTTTTG
1 TTTTATTGTTTTTCTTGTTTTG
26675819 TTT
1 TTT
26675822 GCTTGAGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.04, C:0.04, G:0.11, T:0.81
Consensus pattern (22 bp):
TTTTATTGTTTTTCTTGTTTTG
Found at i:26677487 original size:21 final size:22
Alignment explanation
Indices: 26677457--26677497 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
26677447 TGAGTAATAT
26677457 TTTTTAAAGACTTTGCATTTAA
1 TTTTTAAAGACTTTGCATTTAA
*
26677479 TTTTT-AAGACTTTTCATTT
1 TTTTTAAAGACTTTGCATTT
26677498 GAGATAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.27, C:0.10, G:0.07, T:0.56
Consensus pattern (22 bp):
TTTTTAAAGACTTTGCATTTAA
Found at i:26696560 original size:12 final size:13
Alignment explanation
Indices: 26696542--26696577 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
26696532 TCAGAGCAGG
26696542 TTCTTCTTCTTTC
1 TTCTTCTTCTTTC
26696555 -TCTTCTTCTTTC
1 TTCTTCTTCTTTC
*
26696567 TTCCTCTTCTT
1 TTCTTCTTCTT
26696578 GATCTTTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (13 bp):
TTCTTCTTCTTTC
Found at i:26708742 original size:12 final size:12
Alignment explanation
Indices: 26708721--26708767 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
26708711 TCACAAACAA
26708721 GCTCGTTTATTG
1 GCTCGTTTATTG
* *
26708733 GCTTGTTTATTA
1 GCTCGTTTATTG
*
26708745 GCTCATTTATTG
1 GCTCGTTTATTG
*
26708757 ACTCGTTTATT
1 GCTCGTTTATT
26708768 TATTAATGAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.15, C:0.15, G:0.17, T:0.53
Consensus pattern (12 bp):
GCTCGTTTATTG
Found at i:26708753 original size:24 final size:24
Alignment explanation
Indices: 26708720--26708767 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26708710 TTCACAAACA
* * *
26708720 AGCTCGTTTATTGGCTTGTTTATT
1 AGCTCATTTATTGACTCGTTTATT
26708744 AGCTCATTTATTGACTCGTTTATT
1 AGCTCATTTATTGACTCGTTTATT
26708768 TATTAATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.52
Consensus pattern (24 bp):
AGCTCATTTATTGACTCGTTTATT
Found at i:26710919 original size:7 final size:7
Alignment explanation
Indices: 26710907--26710933 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
26710897 TACAACCTCC
26710907 TCCTCTT
1 TCCTCTT
26710914 TCCTCTT
1 TCCTCTT
26710921 TCCTCTT
1 TCCTCTT
26710928 TCCTCT
1 TCCTCT
26710934 CATTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (7 bp):
TCCTCTT
Found at i:26715284 original size:23 final size:24
Alignment explanation
Indices: 26715238--26715290 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
26715228 TTTATAATAC
*
26715238 ATATATTTTTAAAAAAGTTTTAAA
1 ATATATTTTTAAAAAAGTTCTAAA
* *
26715262 ATATTTTTTTATAAAA-TTCTAAA
1 ATATATTTTTAAAAAAGTTCTAAA
26715285 ATATAT
1 ATATAT
26715291 AAATTTAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
ATATATTTTTAAAAAAGTTCTAAA
Found at i:26715289 original size:15 final size:15
Alignment explanation
Indices: 26715271--26715329 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
26715261 AATATTTTTT
26715271 TATA-AAATTCTAAAA
1 TATATAAATT-TAAAA
*
26715286 TATATAAATTTAAAT
1 TATATAAATTTAAAA
* * *
26715301 TGTAAAAAGTTAAAA
1 TATATAAATTTAAAA
26715316 TA-ATAAA-TTAAAA
1 TATATAAATTTAAAA
26715329 T
1 T
26715330 TAAAAATGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
13 7 0.19
14 4 0.11
15 20 0.56
16 5 0.14
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (15 bp):
TATATAAATTTAAAA
Found at i:26715335 original size:28 final size:30
Alignment explanation
Indices: 26715281--26715340 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 30
26715271 TATAAAATTC
* *
26715281 TAAAATATATAAATTTAAATTGTAAAAAGT
1 TAAAATATATAAATTAAAATTGAAAAAAGT
*
26715311 TAAAATA-ATAAATTAAAATT-AAAAATGT
1 TAAAATATATAAATTAAAATTGAAAAAAGT
26715339 TA
1 TA
26715341 TAAAAATTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 8 0.30
29 12 0.44
30 7 0.26
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (30 bp):
TAAAATATATAAATTAAAATTGAAAAAAGT
Found at i:26715413 original size:21 final size:21
Alignment explanation
Indices: 26715370--26715414 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
26715360 ATATATATTA
*
26715370 TTTTTTATAATAATTTTCAAT
1 TTTTTTATAATAATTTTAAAT
*
26715391 TTTTTTAT-ATTATTTTAACAT
1 TTTTTTATAATAATTTTAA-AT
26715412 TTT
1 TTT
26715415 AAAATTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTTATAATAATTTTAAAT
Found at i:26715473 original size:21 final size:22
Alignment explanation
Indices: 26715441--26715482 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
26715431 TATTTTAGAG
*
26715441 TTTTATAAAAAAATATTTTTAA
1 TTTTATAAAAAAATATATTTAA
*
26715463 TTTTA-AAAAAATTATATTTA
1 TTTTATAAAAAAATATATTTA
26715483 TTATATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TTTTATAAAAAAATATATTTAA
Found at i:26715479 original size:23 final size:26
Alignment explanation
Indices: 26715424--26715481 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 26
26715414 TAAAATTTAT
26715424 AATTATATATTTTAGAGTTTTATAAAA
1 AATTATAT-TTTTAGAGTTTTATAAAA
26715451 AA--ATATTTTTA-A-TTTTA-AAAA
1 AATTATATTTTTAGAGTTTTATAAAA
26715472 AATTATATTT
1 AATTATATTT
26715482 ATTATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
21 6 0.21
22 5 0.17
23 7 0.24
24 5 0.17
25 4 0.14
27 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (26 bp):
AATTATATTTTTAGAGTTTTATAAAA
Found at i:26716058 original size:23 final size:23
Alignment explanation
Indices: 26716016--26716059 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
26716006 CTAACAAGTG
* * *
26716016 AAGTTATATTTTTTTTTAAAATT
1 AAGTTATATATTTCTATAAAATT
26716039 AAGTTATATATTTCTATAAAA
1 AAGTTATATATTTCTATAAAA
26716060 GTAATTTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (23 bp):
AAGTTATATATTTCTATAAAATT
Found at i:26717325 original size:29 final size:31
Alignment explanation
Indices: 26717269--26717345 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
26717259 ATCTCAAAAT
* *
26717269 TATACATGAATTTTAATTTTATATGTAATTG
1 TATACATGAATTTTAATTTTAGATGTAATTA
*
26717300 TATACATGAATTTTAA-TTT-GGTGTAATTA
1 TATACATGAATTTTAATTTTAGATGTAATTA
*
26717329 TATATATGAAATTTTAA
1 TATACATG-AATTTTAA
26717346 ACGTGGTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
29 14 0.34
30 11 0.27
31 16 0.39
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49
Consensus pattern (31 bp):
TATACATGAATTTTAATTTTAGATGTAATTA
Found at i:26726951 original size:42 final size:42
Alignment explanation
Indices: 26726904--26727802 Score: 399
Period size: 38 Copynumber: 22.9 Consensus size: 42
26726894 AGATGGTGGC
* *
26726904 CTTCAATCTGCCCCATGATCGGGGTAACAAATTGGATGATGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
*
26726946 CTTCAATCTGCCCCATTA-CTGGGGTAAGAGATTGGATG--G-
1 CTTCAATCTGCCCCATGATC-GGGGTAAGAGATTGGATGATGT
* * * * *
26726985 CTTCAATCTACCCCATGGTCGGAGTAAGTGATTGAATGATGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
*
26727027 CTTCAATCTGCCCTATGATCGGGGT-A-AGATT-G--GATGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
* ** * * *
26727064 -TTCAATTTGCCTTATGATCGAGCTAAGAGATTCG-TG-TGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
* ** *
26727103 CTTCAATCTGCCCTC-TAATTAGGGTAAAAGATT-G--GATG-
1 CTTCAATCTGCCC-CATGATCGGGGTAAGAGATTGGATGATGT
* *
26727141 CTTTAATCTGCCCCATGATCGGGGTAAGAGATT-GACG-TGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
* ** ** * *
26727181 CTTCAATTTGCCCTTTGATTAGAGTAAAAGATTGGAT-A---
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
26727219 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGG-T-ATGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
* ** ** * * * *
26727259 CTTCAATATGCCCTTTGATTAGGATAAAATATTGGATGCTG-
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
* *** *
26727300 --T-AATTTGCCCCATGATTATGGTAAGAGATTAG-TG-TGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
* * * ** *
26727337 CTTCAATCTTCCTTC-TAATTAGGGTAAAAGATT-G--GATG-
1 CTTCAATCTGCC-CCATGATCGGGGTAAGAGATTGGATGATGT
* * *
26727375 CTTCAATCTGCCCCCTAATTGGGGTAAGAGATTGG-TG-TGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
* * ** * * *
26727415 CTTCAATCTTCCCTC-TAATTAGGTTAAAAG-TTTG--GATG-
1 CTTCAATCTGCCC-CATGATCGGGGTAAGAGATTGGATGATGT
*
26727453 CTTCAATCTGCCCCATGATCGGGCTAAGAGATTGG-TG-TGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
** ** *
26727493 CTTCAATCTGCCCTTTGATTAGGGTAAAAGATT-GA--ATGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
* * * * *
26727532 -TTCAATCTACCCCATGATTGGGCTAAGAGATTAGAAT-ATAT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATT-GGATGATGT
* ** *
26727573 -TT-AATCTTCCCTC-TGATTAGGGTAAAAGATT-G--GATG-
1 CTTCAATCTGCCC-CATGATCGGGGTAAGAGATTGGATGATGT
* * *
26727609 CTTTAATCTACCCCATAATCGGGGTAAGAGATTGG-TG-TGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
* ** ** *
26727649 TTTCAATCTGCCCTTTGATTAGGGTAAAAGATT-G--GATG-
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
* * *
26727687 CTTCAATTTGCCCCATGATTGGGGTAAGAGATTGG-TG-TGC
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
*** *
26727727 CTTCAATCTGCCCTC-TGATTATGGTAAAAGATT-G--GATG-
1 CTTCAATCTGCCC-CATGATCGGGGTAAGAGATTGGATGATGT
* *** *
26727765 CTTCAATCTGCTCCATGATCAATGTATGAGATTGGATG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATG
26727803 GTAACATCGT
Statistics
Matches: 657, Mismatches: 138, Indels: 125
0.71 0.15 0.14
Matches are distributed among these distances:
36 22 0.03
37 19 0.03
38 237 0.36
39 74 0.11
40 233 0.35
41 16 0.02
42 56 0.09
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGT
Found at i:26727000 original size:39 final size:41
Alignment explanation
Indices: 26726904--26727271 Score: 184
Period size: 40 Copynumber: 9.3 Consensus size: 41
26726894 AGATGGTGGC
26726904 CTTCAATCTGCCCCATGATCGGGGTAACAAATTGGATGATGT
1 CTTCAATCTGCCCCATGATCGGGGTAACAAATTGGATGA-GT
* * *
26726946 CTTCAATCTGCCCCATTA-CTGGGGTAAGAGATTGGATG-G-
1 CTTCAATCTGCCCCATGATC-GGGGTAACAAATTGGATGAGT
* * * *** *
26726985 CTTCAATCTACCCCATGGTCGGAGTAAGTGATTGAATGATGT
1 CTTCAATCTGCCCCATGATCGGGGTAACAAATTGGATGA-GT
* *
26727027 CTTCAATCTGCCCTATGATCGGGGT-A-AGATTGGAT--GT
1 CTTCAATCTGCCCCATGATCGGGGTAACAAATTGGATGAGT
* ** * * * * * *
26727064 -TTCAATTTGCCTTATGATCGAGCTAAGAGATTCG-TGTGT
1 CTTCAATCTGCCCCATGATCGGGGTAACAAATTGGATGAGT
* **
26727103 CTTCAATCTGCCCTC-TAATTAGGGTAA-AAGATTGGAT--G-
1 CTTCAATCTGCCC-CATGATCGGGGTAACAA-ATTGGATGAGT
* * * * *
26727141 CTTTAATCTGCCCCATGATCGGGGTAAGAGATT-GACGTGT
1 CTTCAATCTGCCCCATGATCGGGGTAACAAATTGGATGAGT
* ** ** *
26727181 CTTCAATTTGCCCTTTGATTAGAGTAA-AAGATTGGAT-A--
1 CTTCAATCTGCCCCATGATCGGGGTAACAA-ATTGGATGAGT
* *
26727219 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGG-T-ATGT
1 CTTCAATCTGCCCCATGATCGGGGTAACAAATTGGATGA-GT
*
26727259 CTTCAATATGCCC
1 CTTCAATCTGCCC
26727272 TTTGATTAGG
Statistics
Matches: 248, Mismatches: 54, Indels: 50
0.70 0.15 0.14
Matches are distributed among these distances:
36 20 0.08
37 9 0.04
38 56 0.23
39 38 0.15
40 65 0.26
41 6 0.02
42 54 0.22
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (41 bp):
CTTCAATCTGCCCCATGATCGGGGTAACAAATTGGATGAGT
Found at i:26727799 original size:78 final size:78
Alignment explanation
Indices: 26726904--26727784 Score: 1014
Period size: 78 Copynumber: 11.3 Consensus size: 78
26726894 AGATGGTGGC
* * * * *
26726904 CTTCAATCTGCCCCATGATCGGGGTAACAAATTGGATGATGTCTTCAATCTGCCC-CATTACTGG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGG-TG-TGTCTTCAATCTGCCCTC-TGATTAG
*
26726968 GGTAAGAGATTGGATGG
63 GGTAAAAGATTGGAT-G
* * * * * * **
26726985 CTTCAATCTACCCCATGGTCGGAGTAAGTGATTGAATGATGTCTTCAATCTGCCCTATGATCGGG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTG-GTG-TGTCTTCAATCTGCCCTCTGATTAGG
26727050 GT--AAGATTGGATG
64 GTAAAAGATTGGATG
* * ** * * * *
26727063 TTTCAATTTGCCTTATGATCGAGCTAAGAGATTCGTGTGTCTTCAATCTGCCCTCTAATTAGGGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
26727128 AAAAGATTGGATG
66 AAAAGATTGGATG
* ** * * *
26727141 CTTTAATCTGCCCCATGATCGGGGTAAGAGATTGACGTGTCTTCAATTTGCCCTTTGATTAGAGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
*
26727206 AAAAGATTGGATA
66 AAAAGATTGGATG
* * * *
26727219 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTATGTCTTCAATATGCCCTTTGATTAGGAT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
*
26727284 AAAATATTGGATG
66 AAAAGATTGGATG
* *** * * * *
26727297 CTGT-AATTTGCCCCATGATTATGGTAAGAGATTAGTGTGTCTTCAATCTTCCTTCTAATTAGGG
1 CT-TCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGG
26727361 TAAAAGATTGGATG
65 TAAAAGATTGGATG
* * * * * *
26727375 CTTCAATCTGCCCCCTAATTGGGGTAAGAGATTGGTGTGTCTTCAATCTTCCCTCTAATTAGGTT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
*
26727440 AAAAGTTTGGATG
66 AAAAGATTGGATG
* *
26727453 CTTCAATCTGCCCCATGATCGGGCTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTAGGGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
*
26727518 AAAAGATTGAATG
66 AAAAGATTGGATG
* * * * * ** * * * *
26727531 TTTCAATCTACCCCATGATTGGGCTAAGAGATTAGAATATATTTAATCTTCCCTCTGATTAGGGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
26727596 AAAAGATTGGATG
66 AAAAGATTGGATG
* * * * *
26727609 CTTTAATCTACCCCATAATCGGGGTAAGAGATTGGTGTGTTTTCAATCTGCCCTTTGATTAGGGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
26727674 AAAAGATTGGATG
66 AAAAGATTGGATG
* * * *
26727687 CTTCAATTTGCCCCATGATTGGGGTAAGAGATTGGTGTGCCTTCAATCTGCCCTCTGATTATGGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
26727752 AAAAGATTGGATG
66 AAAAGATTGGATG
*
26727765 CTTCAATCTGCTCCATGATC
1 CTTCAATCTGCCCCATGATC
26727785 AATGTATGAG
Statistics
Matches: 673, Mismatches: 121, Indels: 15
0.83 0.15 0.02
Matches are distributed among these distances:
76 24 0.04
77 3 0.00
78 582 0.86
79 10 0.01
81 54 0.08
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (78 bp):
CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
AAAAGATTGGATG
Found at i:26728056 original size:42 final size:42
Alignment explanation
Indices: 26727942--26728048 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 42
26727932 TAGTGACGTA
* * **
26727942 AGATTCGCCTTTGCAGCTTCAATCTAGC-CCTTTACAGCTTTG
1 AGATTCGCCTTTACGGCTTCAATCTA-CTTTTTTACAGCTTTG
26727984 AGATTCGCCTTTACGGCTTCAATCTACTTTTTTACAG-TCTTG
1 AGATTCGCCTTTACGGCTTCAATCTACTTTTTTACAGCT-TTG
*
26728026 AGATTCGCCTTTCCGGCTTCAAT
1 AGATTCGCCTTTACGGCTTCAAT
26728049 TTGCTTTTCC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
41 2 0.03
42 56 0.97
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (42 bp):
AGATTCGCCTTTACGGCTTCAATCTACTTTTTTACAGCTTTG
Found at i:26728122 original size:49 final size:48
Alignment explanation
Indices: 26728069--26728274 Score: 173
Period size: 49 Copynumber: 4.2 Consensus size: 48
26728059 TCATCTTCAG
* * *
26728069 GGTATGAGATTCGCCGTTGCAGCCTT-AATCTTTCCCTTCACATCTCTAA
1 GGTATAAGATTCGTCGTTGC-GGCTTCAATCTTT-CCTTCACATCTCTAA
* * * * *
26728118 GGTATAAGGTTCGTCGTTGTGGCTTCAACCTTTCCTTCCATATCTCTAT
1 GGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCTT-CACATCTCTAA
* * * *
26728167 GGTACAAGATTCGTCGTTGCGGTTTCAATCTTTTCCATCACATCACTAA
1 GGTATAAGATTCGTCGTTGCGGCTTCAATC-TTTCCTTCACATCTCTAA
* * * * * *
26728216 GGTACAA-AGTTTGTCGTTACGACTTCAACCTTTCCTTCTATATCTCTAA
1 GGTATAAGA-TTCGTCGTTGCGGCTTCAATCTTTCCTTC-ACATCTCTAA
*
26728265 GGTATTAGAT
1 GGTATAAGAT
26728275 CTGCCGTCGT
Statistics
Matches: 124, Mismatches: 27, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
48 16 0.13
49 101 0.81
50 7 0.06
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (48 bp):
GGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCTTCACATCTCTAA
Found at i:26728292 original size:98 final size:98
Alignment explanation
Indices: 26728075--26728300 Score: 240
Period size: 98 Copynumber: 2.3 Consensus size: 98
26728065 TCAGGGTATG
* * * * * * **
26728075 AGATTCGCCGTTGCAGCCTT-AATCTTTCCCTTCACATCTCTAAGGTATAAGGTTCGTCGTTGTG
1 AGATTCGCCGTCGC-GACTTCAATCTTTCCCATCACATCACTAAGGTACAAAGTTCGTCGTTACG
* *
26728139 GCTTCAACCTTTCCTTCCATATCTCTATGGTACA
65 ACTTCAACCTTTCCTTCCATATCTCTAAGGTACA
* * ** * *
26728173 AGATTCGTCGTTGCGGTTTCAATCTTTTCCATCACATCACTAAGGTACAAAGTTTGTCGTTACGA
1 AGATTCGCCGTCGCGACTTCAATCTTTCCCATCACATCACTAAGGTACAAAGTTCGTCGTTACGA
* **
26728238 CTTCAACCTTTCCTTCTATATCTCTAAGGTATT
66 CTTCAACCTTTCCTTCCATATCTCTAAGGTACA
*
26728271 AGA-TCTGCCGTCGTGACTTCAATCTTTCCC
1 AGATTC-GCCGTCGCGACTTCAATCTTTCCC
26728301 TTCAAACCTG
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
97 5 0.05
98 99 0.95
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (98 bp):
AGATTCGCCGTCGCGACTTCAATCTTTCCCATCACATCACTAAGGTACAAAGTTCGTCGTTACGA
CTTCAACCTTTCCTTCCATATCTCTAAGGTACA
Found at i:26729241 original size:20 final size:21
Alignment explanation
Indices: 26729213--26729263 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 21
26729203 TCACCTCGAG
26729213 CTCTATTTTTTTTTC-TCTTTT
1 CTCT-TTTTTTTTTCTTCTTTT
26729234 CTCTTTTTTTTTTCTTTCTTTT
1 CTCTTTTTTTTTTC-TTCTTTT
26729256 C-CTTTTTT
1 CTCTTTTTT
26729264 ATGTTTTTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.36
21 11 0.39
22 7 0.25
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (21 bp):
CTCTTTTTTTTTTCTTCTTTT
Found at i:26729243 original size:22 final size:21
Alignment explanation
Indices: 26729218--26729263 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 21
26729208 TCGAGCTCTA
26729218 TTTTTTTTTC--TCTTTTCTCT
1 TTTTTTTTTCTTTCTTTTC-CT
26729238 TTTTTTTTTCTTTCTTTTCCT
1 TTTTTTTTTCTTTCTTTTCCT
26729259 TTTTT
1 TTTTT
26729264 ATGTTTTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 10 0.42
21 7 0.29
22 7 0.29
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTTTTTCTTTCTTTTCCT
Found at i:26731996 original size:97 final size:97
Alignment explanation
Indices: 26731821--26732014 Score: 259
Period size: 97 Copynumber: 2.0 Consensus size: 97
26731811 AACCTTGGAA
* * * *
26731821 AAGGATATTCGATTATCATGATTTGAAGAAAAGTCGCACCTAGTAAGTTAAGGCACAAATTTTTA
1 AAGGATATTCGATTATCACGACTTGAAGAAAAATCGCACCTAGTAAGTTAAGGCACAAATTTTCA
* *
26731886 GAATCAGAGAT-AAAGAAACATTGCCTCGATTT
66 AAATCAGAAATAAAAG-AACATTGCCTCGATTT
*
26731918 AAGGATATTCGATTATTC-CGACTTGAAGAAAAATCGCGCCTAGTAAGTTAAGGCACAAATTTTC
1 AAGGATATTCGATTA-TCACGACTTGAAGAAAAATCGCACCTAGTAAGTTAAGGCACAAATTTTC
* *
26731982 AAAACTCA-AAATAAAAGAATATTGCCTTGATTT
65 AAAA-TCAGAAATAAAAGAACATTGCCTCGATTT
26732015 CAAAGTTTTC
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
97 76 0.89
98 9 0.11
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (97 bp):
AAGGATATTCGATTATCACGACTTGAAGAAAAATCGCACCTAGTAAGTTAAGGCACAAATTTTCA
AAATCAGAAATAAAAGAACATTGCCTCGATTT
Found at i:26732309 original size:29 final size:29
Alignment explanation
Indices: 26732277--26732498 Score: 222
Period size: 30 Copynumber: 7.5 Consensus size: 29
26732267 TTTTAGACAC
26732277 TTTGGGGTCAAAAATGGAATTTTTGG-ATG
1 TTTGGGGTC-AAAATGGAATTTTTGGAATG
*
26732306 TTTGGGGGT-AAAATGGTAATTTTTGGAAAG
1 TTT-GGGGTCAAAATGG-AATTTTTGGAATG
** *
26732336 TTTAAGGTCAAAAATGGAATTTTTAG-ATG
1 TTTGGGGTC-AAAATGGAATTTTTGGAATG
*
26732365 TTTGAGGGT-AAAATGGTAATTTTTGGAAAG
1 TTTG-GGGTCAAAATGG-AATTTTTGGAATG
* *
26732395 TTCGAGGTCAAAATGGAATTTTTGG-ATG
1 TTTGGGGTCAAAATGGAATTTTTGGAATG
26732423 TTTGGGGGT-AAAATGGTAATTTTTGGAATG
1 TTT-GGGGTCAAAATGG-AATTTTTGGAATG
* * *
26732453 TTCGGGGCCAAAAATGGAATTTTTGGAAAG
1 TTTGGGGTC-AAAATGGAATTTTTGGAATG
26732483 TTTGGGGGTCAAAATG
1 TTT-GGGGTCAAAATG
26732499 TAGTTTCTAG
Statistics
Matches: 159, Mismatches: 19, Indels: 29
0.77 0.09 0.14
Matches are distributed among these distances:
28 25 0.16
29 57 0.36
30 58 0.36
31 19 0.12
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.36
Consensus pattern (29 bp):
TTTGGGGTCAAAATGGAATTTTTGGAATG
Found at i:26732365 original size:59 final size:59
Alignment explanation
Indices: 26732282--26732498 Score: 337
Period size: 59 Copynumber: 3.7 Consensus size: 59
26732272 GACACTTTGG
**
26732282 GGTCAAAAATGGAATTTTTGGATGTTTGGGGGTAAAATGGTAATTTTTGGAAAGTTTAA
1 GGTCAAAAATGGAATTTTTGGATGTTTGGGGGTAAAATGGTAATTTTTGGAAAGTTCGA
* *
26732341 GGTCAAAAATGGAATTTTTAGATGTTTGAGGGTAAAATGGTAATTTTTGGAAAGTTCGA
1 GGTCAAAAATGGAATTTTTGGATGTTTGGGGGTAAAATGGTAATTTTTGGAAAGTTCGA
* *
26732400 GGTC-AAAATGGAATTTTTGGATGTTTGGGGGTAAAATGGTAATTTTTGGAATGTTCGG
1 GGTCAAAAATGGAATTTTTGGATGTTTGGGGGTAAAATGGTAATTTTTGGAAAGTTCGA
* *
26732458 GGCCAAAAATGGAATTTTTGGAAAGTTTGGGGGTCAAAATG
1 GGTCAAAAATGGAATTTTTGG-ATGTTTGGGGGT-AAAATG
26732499 TAGTTTCTAG
Statistics
Matches: 145, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
58 53 0.37
59 75 0.52
60 11 0.08
61 6 0.04
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.35
Consensus pattern (59 bp):
GGTCAAAAATGGAATTTTTGGATGTTTGGGGGTAAAATGGTAATTTTTGGAAAGTTCGA
Found at i:26732443 original size:117 final size:117
Alignment explanation
Indices: 26732251--26732476 Score: 337
Period size: 117 Copynumber: 1.9 Consensus size: 117
26732241 TTGGATGCCC
* * *
26732251 GAGGGTAAAACGGTAATTTTAGACACTTTGGGGTCAAAAATGGAATTTTTGGATGTTTGGGGGTA
1 GAGGGTAAAACGGTAATTTTAGAAACTTCGAGGTCAAAAATGGAATTTTTGGATGTTTGGGGGTA
* *
26732316 AAATGGTAATTTTTGGAAAGTTTAAGGTCAAAAATGGAATTTTTAGATGTTT
66 AAATGGTAATTTTTGGAAAGTTCAAGGCCAAAAATGGAATTTTTAGATGTTT
* * *
26732368 GAGGGTAAAATGGTAATTTTTGGAAAGTTCGAGGTC-AAAATGGAATTTTTGGATGTTTGGGGGT
1 GAGGGTAAAACGGTAA-TTTTAGAAACTTCGAGGTCAAAAATGGAATTTTTGGATGTTTGGGGGT
* **
26732432 AAAATGGTAATTTTTGGAATGTTCGGGGCCAAAAATGGAATTTTT
65 AAAATGGTAATTTTTGGAAAGTTCAAGGCCAAAAATGGAATTTTT
26732477 GGAAAGTTTG
Statistics
Matches: 97, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
117 83 0.86
118 14 0.14
ACGTcount: A:0.31, C:0.04, G:0.29, T:0.35
Consensus pattern (117 bp):
GAGGGTAAAACGGTAATTTTAGAAACTTCGAGGTCAAAAATGGAATTTTTGGATGTTTGGGGGTA
AAATGGTAATTTTTGGAAAGTTCAAGGCCAAAAATGGAATTTTTAGATGTTT
Found at i:26732497 original size:30 final size:30
Alignment explanation
Indices: 26732280--26732498 Score: 222
Period size: 29 Copynumber: 7.4 Consensus size: 30
26732270 TAGACACTTT
26732280 GGGGTCAAAAATGGAATTTTTGG-ATGTTTG
1 GGGGTC-AAAATGGAATTTTTGGAATGTTTG
*
26732310 GGGGT-AAAATGGTAATTTTTGGAAAGTTT-
1 GGGGTCAAAATGG-AATTTTTGGAATGTTTG
** *
26732339 AAGGTCAAAAATGGAATTTTTAG-ATGTTTG
1 GGGGTC-AAAATGGAATTTTTGGAATGTTTG
* * *
26732369 AGGGT-AAAATGGTAATTTTTGGAAAG-TTC
1 GGGGTCAAAATGG-AATTTTTGGAATGTTTG
*
26732398 GAGGTCAAAATGGAATTTTTGG-ATGTTTG
1 GGGGTCAAAATGGAATTTTTGGAATGTTTG
*
26732427 GGGGT-AAAATGGTAATTTTTGGAATG-TTC
1 GGGGTCAAAATGG-AATTTTTGGAATGTTTG
* *
26732456 GGGGCCAAAAATGGAATTTTTGGAAAGTTTG
1 GGGGTC-AAAATGGAATTTTTGGAATGTTTG
26732487 GGGGTCAAAATG
1 GGGGTCAAAATG
26732499 TAGTTTCTAG
Statistics
Matches: 156, Mismatches: 19, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
28 23 0.15
29 60 0.38
30 52 0.33
31 21 0.13
ACGTcount: A:0.31, C:0.04, G:0.31, T:0.35
Consensus pattern (30 bp):
GGGGTCAAAATGGAATTTTTGGAATGTTTG
Found at i:26733259 original size:2 final size:2
Alignment explanation
Indices: 26733252--26733281 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
26733242 AAAATATACT
26733252 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26733282 GTTGTGCATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26733472 original size:2 final size:2
Alignment explanation
Indices: 26733392--26733455 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
26733382 ATGTATTTAA
26733392 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26733434 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
26733456 GTACATGCTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26734751 original size:39 final size:39
Alignment explanation
Indices: 26734708--26734969 Score: 213
Period size: 39 Copynumber: 6.7 Consensus size: 39
26734698 TAGTGATTTA
* * *
26734708 CCCCAAACTCGGGGTAAAAGATTGGATGACTACAATCTG
1 CCCCAAGCTCGGGGTAAGAGATTGGATGACTGCAATCTG
* * * **
26734747 CCCCAAGCTCAGGGTAAGAGATTGGCTAACTGTGATCTG
1 CCCCAAGCTCGGGGTAAGAGATTGGATGACTGCAATCTG
* *
26734786 CCCTAAGCTCGGGGTAAGAGATTGGATGGCTGCAATCTG
1 CCCCAAGCTCGGGGTAAGAGATTGGATGACTGCAATCTG
* * * * * **
26734825 CCCCAGGCTTGAGGTAAGAAATTGGCTGA-TGGTGATCTG
1 CCCCAAGCTCGGGGTAAGAGATTGGATGACT-GCAATCTG
* * * * ** * *
26734864 CCCTAGGCTCGGGGTAAAAGATTGAATGGTTGCAATTTA
1 CCCCAAGCTCGGGGTAAGAGATTGGATGACTGCAATCTG
* * * **
26734903 CCCCAAGCTTGGGGCAAGAGATTGGCTGA-TGGTGATCTG
1 CCCCAAGCTCGGGGTAAGAGATTGGATGACT-GCAATCTG
*
26734942 CCCCAGGCTCGGGGTAAGAGATTGGATG
1 CCCCAAGCTCGGGGTAAGAGATTGGATG
26734970 GTGATGTAAC
Statistics
Matches: 168, Mismatches: 52, Indels: 6
0.74 0.23 0.03
Matches are distributed among these distances:
38 2 0.01
39 165 0.98
40 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (39 bp):
CCCCAAGCTCGGGGTAAGAGATTGGATGACTGCAATCTG
Found at i:26734971 original size:78 final size:78
Alignment explanation
Indices: 26734715--26734970 Score: 343
Period size: 78 Copynumber: 3.3 Consensus size: 78
26734705 TTACCCCAAA
* * ** *
26734715 CTCGGGGTAAAAGATTGGATGACTACAATCTGCCCCAAGCTCAGGGTAAGAGATTGGCTAACT-G
1 CTCGGGGTAAAAGATTGGATGGCTGCAATCTGCCCCAAGCTTGGGGTAAGAGATTGGCTGA-TGG
*
26734779 TGATCTGCCCTAAG
65 TGATCTGCCCTAGG
* * * *
26734793 CTCGGGGTAAGAGATTGGATGGCTGCAATCTGCCCCAGGCTTGAGGTAAGAAATTGGCTGATGGT
1 CTCGGGGTAAAAGATTGGATGGCTGCAATCTGCCCCAAGCTTGGGGTAAGAGATTGGCTGATGGT
26734858 GATCTGCCCTAGG
66 GATCTGCCCTAGG
* * * * *
26734871 CTCGGGGTAAAAGATTGAATGGTTGCAATTTACCCCAAGCTTGGGGCAAGAGATTGGCTGATGGT
1 CTCGGGGTAAAAGATTGGATGGCTGCAATCTGCCCCAAGCTTGGGGTAAGAGATTGGCTGATGGT
*
26734936 GATCTGCCCCAGG
66 GATCTGCCCTAGG
*
26734949 CTCGGGGTAAGAGATTGGATGG
1 CTCGGGGTAAAAGATTGGATGG
26734971 TGATGTAACT
Statistics
Matches: 155, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
77 1 0.01
78 154 0.99
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (78 bp):
CTCGGGGTAAAAGATTGGATGGCTGCAATCTGCCCCAAGCTTGGGGTAAGAGATTGGCTGATGGT
GATCTGCCCTAGG
Found at i:26735291 original size:49 final size:49
Alignment explanation
Indices: 26735235--26736088 Score: 551
Period size: 49 Copynumber: 17.4 Consensus size: 49
26735225 TTACTGTTGT
* *
26735235 AACCTTTCCCTCCATATCTTTGTGGTACTGGATTCGCCGTTGCGGCTTA
1 AACCTTTCCCTTCATATCTTTGTGGTACTGGATTCGCCGTTGCGACTTA
* * ** *
26735284 AATCTTTCCCTTCAT-GCTTCTGACGTACAAGG-TTCGCCGTTGCGACTTA
1 AACCTTTCCCTTCATATCTT-TGTGGTAC-TGGATTCGCCGTTGCGACTTA
* * * * *
26735333 AACCTTTCTCTCCATATCCTTGTGGTACTGGATTCGCCGTTGTGGCTTA
1 AACCTTTCCCTTCATATCTTTGTGGTACTGGATTCGCCGTTGCGACTTA
* * * * * *
26735382 AATCTTTCCCTTCATGT-TTCTGAGGTACAAGG-TTCGCCATTGCAACTTA
1 AACCTTTCCCTTCATATCTT-TGTGGTAC-TGGATTCGCCGTTGCGACTTA
* * * * *
26735431 AACCTTTCCCTCCGTATCTTTGTGGTGCTAGATTCGCCGTTGCGGCTTA
1 AACCTTTCCCTTCATATCTTTGTGGTACTGGATTCGCCGTTGCGACTTA
** * * * **
26735480 AATATTTTCCCTTCAT-GCTTCTGAGGTACAAGG-TTCATCGTTGCGACTTA
1 AA-CCTTTCCCTTCATATCTT-TGTGGTAC-TGGATTCGCCGTTGCGACTTA
* *
26735530 AACCTTTCCCTTCATATCTTCGTGGTACTGGATTCACCGTTGC-AGCTTA
1 AACCTTTCCCTTCATATCTTTGTGGTACTGGATTCGCCGTTGCGA-CTTA
* * * * *
26735579 AATCTTTCCCTTCAT-GCTTCTGAGGTACAAGG-TTCGTCGTTGCGACTTA
1 AACCTTTCCCTTCATATCTT-TGTGGTAC-TGGATTCGCCGTTGCGACTTA
* * * *
26735628 AACCTTTCCC-TCTAAATCTTCGTGGTACTAGATTTGCCGTTGCGACTTA
1 AACCTTTCCCTTC-ATATCTTTGTGGTACTGGATTCGCCGTTGCGACTTA
* * * * ***
26735677 AAGCTTTCCCTTCAT-GCTTCTGAGGTACAAGG-TTCGTTATTGCGACTTA
1 AACCTTTCCCTTCATATCTT-TGTGGTAC-TGGATTCGCCGTTGCGACTTA
* * ** * *
26735726 AACCTTTCCCTTTAAATCTTCATGGTACTGGATTCGTCGTTGTGACTTA
1 AACCTTTCCCTTCATATCTTTGTGGTACTGGATTCGCCGTTGCGACTTA
* * * * *
26735775 AATCTTTCCCTTCAT-GCTTCTGAGGTACAAGG-TTCGTCGTTGCGACTTA
1 AACCTTTCCCTTCATATCTT-TGTGGTAC-TGGATTCGCCGTTGCGACTTA
* * * *
26735824 AACCTTTCCATTTAAATCTTTGTGGTACTGGATTTGCCGTTGC-AGCTTA
1 AACCTTTCCCTTCATATCTTTGTGGTACTGGATTCGCCGTTGCGA-CTTA
* * * * ***
26735873 AATCTTTCCCTTCAT-GCTTCTGAGGTACAAGG-TTCATTGTTGC-AGCTTA
1 AACCTTTCCCTTCATATCTT-TGTGGTAC-TGGATTCGCCGTTGCGA-CTTA
* * * * * * *
26735922 AACCTTTCCCTTTAAATCTTCGTGGTATTGGATTCGCCATTGTGGCTTA
1 AACCTTTCCCTTCATATCTTTGTGGTACTGGATTCGCCGTTGCGACTTA
* * * * * *
26735971 AATCTTTCCCTTCAT-GCTTCTGAGGTACAAGG-TTTGTCGTTGCGACTTA
1 AACCTTTCCCTTCATATCTT-TGTGGTAC-TGGATTCGCCGTTGCGACTTA
* * * * * * *
26736020 AACCTTTCCCTTTAAATCTTTGTGGTACTGGATTTGCCATTGCGGCCTC
1 AACCTTTCCCTTCATATCTTTGTGGTACTGGATTCGCCGTTGCGACTTA
* *
26736069 AACTTTTCCCTTCAAATCTT
1 AACCTTTCCCTTCATATCTT
26736089 CATGTTTTTC
Statistics
Matches: 601, Mismatches: 165, Indels: 78
0.71 0.20 0.09
Matches are distributed among these distances:
48 37 0.06
49 494 0.82
50 69 0.11
51 1 0.00
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.38
Consensus pattern (49 bp):
AACCTTTCCCTTCATATCTTTGTGGTACTGGATTCGCCGTTGCGACTTA
Found at i:26735356 original size:98 final size:98
Alignment explanation
Indices: 26735235--26736082 Score: 1105
Period size: 98 Copynumber: 8.6 Consensus size: 98
26735225 TTACTGTTGT
** * *
26735235 AACCTTTCCCTCCATATCTTTGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTTTAAATCCTTGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* *
26735300 CTTCTGACGTACAAGGTTCGCCGTTGCGACTTA
66 CTTCTGAGGTACAAGGTTCGTCGTTGCGACTTA
* ** * *
26735333 AACCTTTCTCTCCATATCCTTGTGGTACTGGATTCGCCGTTGTGGCTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTTTAAATCCTTGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* * * *
26735398 TTTCTGAGGTACAAGGTTCGCCATTGCAACTTA
66 CTTCTGAGGTACAAGGTTCGTCGTTGCGACTTA
**** * * * *
26735431 AACCTTTCCCTCCGTATCTTTGTGGTGCTAGATTCGCCGTTGCGGCTTAAATATTTTCCCTTCAT
1 AACCTTTCCCTTTAAATCCTTGTGGTACTGGATTCGCCGTTGCGGCTTAAAT-CTTTCCCTTCAT
*
26735496 GCTTCTGAGGTACAAGGTTCATCGTTGCGACTTA
65 GCTTCTGAGGTACAAGGTTCGTCGTTGCGACTTA
* * * *
26735530 AACCTTTCCCTTCATAT-CTTCGTGGTACTGGATTCACCGTTGCAGCTTAAATCTTTCCCTTCAT
1 AACCTTTCCCTTTAAATCCTT-GTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCAT
26735594 GCTTCTGAGGTACAAGGTTCGTCGTTGCGACTTA
65 GCTTCTGAGGTACAAGGTTCGTCGTTGCGACTTA
* * * * *
26735628 AACCTTTCCCTCTAAAT-CTTCGTGGTACTAGATTTGCCGTTGCGACTTAAAGCTTTCCCTTCAT
1 AACCTTTCCCTTTAAATCCTT-GTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCAT
**
26735692 GCTTCTGAGGTACAAGGTTCGTTATTGCGACTTA
65 GCTTCTGAGGTACAAGGTTCGTCGTTGCGACTTA
* * * *
26735726 AACCTTTCCCTTTAAAT-CTTCATGGTACTGGATTCGTCGTTGTGACTTAAATCTTTCCCTTCAT
1 AACCTTTCCCTTTAAATCCTT-GTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCAT
26735790 GCTTCTGAGGTACAAGGTTCGTCGTTGCGACTTA
65 GCTTCTGAGGTACAAGGTTCGTCGTTGCGACTTA
* * * *
26735824 AACCTTTCCATTTAAATCTTTGTGGTACTGGATTTGCCGTTGCAGCTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTTTAAATCCTTGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* *
26735889 CTTCTGAGGTACAAGGTTCATTGTTGC-AGCTTA
66 CTTCTGAGGTACAAGGTTCGTCGTTGCGA-CTTA
* * *
26735922 AACCTTTCCCTTTAAAT-CTTCGTGGTATTGGATTCGCCATTGTGGCTTAAATCTTTCCCTTCAT
1 AACCTTTCCCTTTAAATCCTT-GTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCAT
*
26735986 GCTTCTGAGGTACAAGGTTTGTCGTTGCGACTTA
65 GCTTCTGAGGTACAAGGTTCGTCGTTGCGACTTA
* * * * *
26736020 AACCTTTCCCTTTAAATCTTTGTGGTACTGGATTTGCCATTGCGGCCTCAA-CTTTTCCCTTCA
1 AACCTTTCCCTTTAAATCCTTGTGGTACTGGATTCGCCGTTGCGGCTTAAATC-TTTCCCTTCA
26736083 AATCTTCATG
Statistics
Matches: 668, Mismatches: 74, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
97 4 0.01
98 577 0.86
99 87 0.13
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.38
Consensus pattern (98 bp):
AACCTTTCCCTTTAAATCCTTGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
CTTCTGAGGTACAAGGTTCGTCGTTGCGACTTA
Found at i:26737060 original size:28 final size:29
Alignment explanation
Indices: 26737029--26737099 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
26737019 CACCTCGACC
26737029 TTTCCTTTTCTTTTT-CTGTTTTTTCTAT
1 TTTCCTTTTCTTTTTCCTGTTTTTTCTAT
* * *
26737057 TTTCTTTTTCCTTTTTCCTTTTTTTTCTTT
1 TTTCCTTTT-CTTTTTCCTGTTTTTTCTAT
*
26737087 TTTTCTTTCTCTT
1 TTTCCTTT-TCTT
26737100 CTTTTTTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 8 0.23
29 6 0.17
30 20 0.57
31 1 0.03
ACGTcount: A:0.01, C:0.20, G:0.01, T:0.77
Consensus pattern (29 bp):
TTTCCTTTTCTTTTTCCTGTTTTTTCTAT
Found at i:26737081 original size:22 final size:23
Alignment explanation
Indices: 26737034--26737094 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
26737024 CGACCTTTCC
* *
26737034 TTTTCTTTTTCTGTTTTTTC-TA
1 TTTTCTTTTTCTCTTTTTCCTTA
*
26737056 TTTTCTTTTTC-CTTTTTCCTTTT
1 TTTTCTTTTTCTCTTTTTCC-TTA
*
26737079 TTTTCTTTTTTTCTTT
1 TTTTCTTTTTCTCTTT
26737095 CTCTTCTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 6 0.19
22 11 0.34
23 11 0.34
24 4 0.12
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (23 bp):
TTTTCTTTTTCTCTTTTTCCTTA
Found at i:26737083 original size:17 final size:17
Alignment explanation
Indices: 26737061--26737094 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26737051 TTCTATTTTC
26737061 TTTTTCCTTTTTCCTTT
1 TTTTTCCTTTTTCCTTT
* *
26737078 TTTTTCTTTTTTTCTTT
1 TTTTTCCTTTTTCCTTT
26737095 CTCTTCTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTCCTTTTTCCTTT
Found at i:26737095 original size:29 final size:30
Alignment explanation
Indices: 26737033--26737095 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
26737023 TCGACCTTTC
*
26737033 CTTTTCTTTTTCTGTTTTTTCTATTTTCTT
1 CTTTCCTTTTTCTGTTTTTTCTATTTTCTT
*
26737063 -TTTCCTTTTTCCTTTTTTTTCT-TTTT-TT
1 CTTTCCTTTTT-CTGTTTTTTCTATTTTCTT
26737091 CTTTC
1 CTTTC
26737096 TCTTCTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
28 2 0.07
29 17 0.59
30 10 0.34
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.78
Consensus pattern (30 bp):
CTTTCCTTTTTCTGTTTTTTCTATTTTCTT
Found at i:26737104 original size:23 final size:21
Alignment explanation
Indices: 26737035--26737105 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 21
26737025 GACCTTTCCT
26737035 TTTCTTTTTCTGTTTTTTCTAT-
1 TTTCTTTTTCT-TTTTTTCT-TC
*
26737057 TTTCTTTTTC-CTTTTTC--C
1 TTTCTTTTTCTTTTTTTCTTC
26737075 TTT-TTTTTCTTTTTTTCTTTC
1 TTTCTTTTTCTTTTTTTC-TTC
26737096 TCTTCTTTTT
1 T-TTCTTTTT
26737106 TATTTATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
17 6 0.15
18 9 0.22
20 6 0.15
21 2 0.05
22 12 0.30
23 5 0.12
ACGTcount: A:0.01, C:0.18, G:0.01, T:0.79
Consensus pattern (21 bp):
TTTCTTTTTCTTTTTTTCTTC
Found at i:26737118 original size:23 final size:22
Alignment explanation
Indices: 26737068--26737119 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 22
26737058 TTCTTTTTCC
* *
26737068 TTTTTC-CTTTTTTTTCTTTTT
1 TTTTTCTCTTTTTTTTATTTAT
26737089 TTCTTTCTCTTCTTTTTTATTTAT
1 TT-TTTCTCTT-TTTTTTATTTAT
26737113 TTTTTCT
1 TTTTTCT
26737120 TCATTGCATC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 2 0.08
22 4 0.15
23 8 0.31
24 12 0.46
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (22 bp):
TTTTTCTCTTTTTTTTATTTAT
Found at i:26743067 original size:6 final size:6
Alignment explanation
Indices: 26743056--26743100 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
26743046 TGAGCAAAAT
* * *
26743056 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA
26743101 TATGAATTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.47, C:0.00, G:0.31, T:0.22
Consensus pattern (6 bp):
TGAAAG
Found at i:26746637 original size:15 final size:16
Alignment explanation
Indices: 26746607--26746644 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
26746597 GTAAAATCGA
*
26746607 TTAAAAAGATTAAAAT
1 TTAATAAGATTAAAAT
26746623 TTAATAAGA-TAAAAT
1 TTAATAAGATTAAAAT
*
26746638 TAAATAA
1 TTAATAA
26746645 AAAGACTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
TTAATAAGATTAAAAT
Found at i:26750863 original size:30 final size:30
Alignment explanation
Indices: 26750829--26750972 Score: 148
Period size: 30 Copynumber: 4.8 Consensus size: 30
26750819 TAAAACCCAT
*
26750829 TTTTTCAAAATTATATTTTGACCCCTAAAC
1 TTTTTCAAAATTACATTTTGACCCCTAAAC
* *
26750859 TTTTTTAAAATTACATTTT-AACCCTAAAC
1 TTTTTCAAAATTACATTTTGACCCCTAAAC
* * * *
26750888 TTCTCCAAAAGTACATTTTGACCCCTTAAC
1 TTTTTCAAAATTACATTTTGACCCCTAAAC
** * * * *
26750918 TTTCCCAAAATCATATTTTAACCCTTAAAC
1 TTTTTCAAAATTACATTTTGACCCCTAAAC
26750948 TTTCTT-AAAATTACATTTTGACCCC
1 TTT-TTCAAAATTACATTTTGACCCC
26750973 AAAATTCTCA
Statistics
Matches: 89, Mismatches: 23, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
29 24 0.27
30 65 0.73
ACGTcount: A:0.33, C:0.24, G:0.03, T:0.40
Consensus pattern (30 bp):
TTTTTCAAAATTACATTTTGACCCCTAAAC
Found at i:26750897 original size:59 final size:60
Alignment explanation
Indices: 26750833--26750972 Score: 176
Period size: 59 Copynumber: 2.4 Consensus size: 60
26750823 ACCCATTTTT
* *** *
26750833 TCAAAATTATATTTTGACCCCTAAACTTTTTTAAAATTACATTTTAACCC-TAAAC-TTC
1 TCAAAATTACATTTTGACCCCTAAACTTTCCCAAAATCACATTTTAACCCTTAAACTTTC
* * *
26750891 TCCAAAAGTACATTTTGACCCCTTAACTTTCCCAAAATCATATTTTAACCCTTAAACTTTC
1 T-CAAAATTACATTTTGACCCCTAAACTTTCCCAAAATCACATTTTAACCCTTAAACTTTC
*
26750952 TTAAAATTACATTTTGACCCC
1 TCAAAATTACATTTTGACCCC
26750973 AAAATTCTCA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
58 1 0.01
59 41 0.59
60 23 0.33
61 4 0.06
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (60 bp):
TCAAAATTACATTTTGACCCCTAAACTTTCCCAAAATCACATTTTAACCCTTAAACTTTC
Found at i:26752805 original size:30 final size:29
Alignment explanation
Indices: 26752746--26752805 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
26752736 GTTTGATCAA
26752746 ATGAAAAATTAAATGTTGAAAAGTTAAGT
1 ATGAAAAATTAAATGTTGAAAAGTTAAGT
* *
26752775 ATGAAAATTTATAAGTGTTG-AAATTTAAGT
1 ATGAAAAATTA-AA-TGTTGAAAAGTTAAGT
26752805 A
1 A
26752806 CGGAAGATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 10 0.37
30 12 0.44
31 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.35
Consensus pattern (29 bp):
ATGAAAAATTAAATGTTGAAAAGTTAAGT
Found at i:26753604 original size:21 final size:19
Alignment explanation
Indices: 26753571--26753611 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
26753561 GTAAAATATT
*
26753571 AAAAAAAAAATATATTTCA
1 AAAAAAAAAATATATGTCA
26753590 AAAAATAAAAGATATATGTCA
1 AAAAA-AAAA-ATATATGTCA
26753611 A
1 A
26753612 TTTTTTTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 4 0.21
21 10 0.53
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (19 bp):
AAAAAAAAAATATATGTCA
Found at i:26759536 original size:59 final size:58
Alignment explanation
Indices: 26759431--26759746 Score: 470
Period size: 59 Copynumber: 5.4 Consensus size: 58
26759421 TATGGATACC
*
26759431 CGGGGGCAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATT
1 CGGGGGTAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATT
* * * * * *
26759489 TGGGGGTAAAATGGTAATTTTTAGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
1 CGGGGGTAAAATGGTAA-TTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATT
*
26759548 CAGGGGTAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATT
1 CGGGGGTAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATT
* * * * *
26759606 TGGGGGTAAAATGGCAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
1 CGGGGGTAAAATGGTAA-TTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATT
*
26759665 CGGGGGTAAAATGGTAATTTTGGTGTAATCGAGGTTAAAAATGGAATTTTAAAAGATT
1 CGGGGGTAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATT
*
26759723 AAGGGGGTAAAATGGTAATTTTGG
1 -CGGGGGTAAAATGGTAATTTTGG
26759747 AAAAGTTTTG
Statistics
Matches: 228, Mismatches: 27, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
58 102 0.45
59 126 0.55
ACGTcount: A:0.34, C:0.04, G:0.29, T:0.32
Consensus pattern (58 bp):
CGGGGGTAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATT
Found at i:26759746 original size:117 final size:117
Alignment explanation
Indices: 26759431--26759744 Score: 556
Period size: 117 Copynumber: 2.7 Consensus size: 117
26759421 TATGGATACC
*
26759431 CGGGGGCAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATTTGGGGGT
1 CGGGGGTAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATTTGGGGGT
*
26759496 AAAATGGTAATTTTTAGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
66 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
*
26759548 CAGGGGTAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATTTGGGGGT
1 CGGGGGTAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATTTGGGGGT
* *
26759613 AAAATGGCAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
66 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
* *
26759665 CGGGGGTAAAATGGTAATTTTGGTGTAATCGAGGTTAAAAATGGAATTTTAAAAGATTAAGGGGG
1 CGGGGGTAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATT-TGGGGG
26759730 TAAAATGGTAATTTT
65 TAAAATGGTAATTTT
26759745 GGAAAAGTTT
Statistics
Matches: 187, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
117 168 0.90
118 19 0.10
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (117 bp):
CGGGGGTAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATTTGGGGGT
AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
Found at i:26759760 original size:30 final size:29
Alignment explanation
Indices: 26759726--26760168 Score: 616
Period size: 30 Copynumber: 14.7 Consensus size: 29
26759716 AAAGATTAAG
*
26759726 GGGGTAAAATGGTAATTTTGGAAAAGTTTT
1 GGGGTAAAAT-ATAATTTTGGAAAAGTTTT
*
26759756 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
1 GGGGT-AAAATATAATTTTGGAAAAGTTTT
*
26759786 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
1 GGGGT-AAAATATAATTTTGGAAAAGTTTT
*
26759816 AGGGTCAAAATATAATTTTGGAAAAGTTTT
1 GGGGT-AAAATATAATTTTGGAAAAGTTTT
*
26759846 GGGGTTAAAATGTAATTTTGGAAAAGTTTT
1 GGGG-TAAAATATAATTTTGGAAAAGTTTT
* *
26759876 AGGGTTAAAATGTAATTTTGGAAAAGTTTT
1 -GGGGTAAAATATAATTTTGGAAAAGTTTT
* *
26759906 GGGGTTAAAATATAATTTTAGAAAAGTTTC
1 GGGG-TAAAATATAATTTTGGAAAAGTTTT
*
26759936 GAGGTCAAAATATAATTTTGGAAAAGTTTT
1 GGGGT-AAAATATAATTTTGGAAAAGTTTT
26759966 GGGGTTAAAATATAATTTTGGAAAAGTTTT
1 GGGG-TAAAATATAATTTTGGAAAAGTTTT
*
26759996 GGGGTTAAAATGTAATTTTGGAAAAGTTTT
1 GGGG-TAAAATATAATTTTGGAAAAGTTTT
**
26760026 GGGGTTAAAATGCAATTTTGGAAAAGTTTT
1 GGGG-TAAAATATAATTTTGGAAAAGTTTT
*
26760056 GGGGTCAAAATATAATTTTGGAAAAGTTTC
1 GGGGT-AAAATATAATTTTGGAAAAGTTTT
26760086 GGGGTTAAAATATAATTTTGGAAAAGTTTT
1 GGGG-TAAAATATAATTTTGGAAAAGTTTT
26760116 GGGGTTAAAATATAATTTTGGAAAAGTTTT
1 GGGG-TAAAATATAATTTTGGAAAAGTTTT
26760146 GGGGTCAAAATATAATTTCTGGA
1 GGGGT-AAAATATAATTT-TGGA
26760169 TTGTTTGGGG
Statistics
Matches: 384, Mismatches: 19, Indels: 19
0.91 0.05 0.05
Matches are distributed among these distances:
29 6 0.02
30 363 0.95
31 15 0.04
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.37
Consensus pattern (29 bp):
GGGGTAAAATATAATTTTGGAAAAGTTTT
Found at i:26759776 original size:19 final size:19
Alignment explanation
Indices: 26759752--26759806 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
26759742 TTTGGAAAAG
26759752 TTTTGGGGTCAAAATGTAA
1 TTTTGGGGTCAAAATGTAA
26759771 TTTT--GG--AAAA-G---
1 TTTTGGGGTCAAAATGTAA
26759782 TTTTGGGGTCAAAATGTAA
1 TTTTGGGGTCAAAATGTAA
26759801 TTTTGG
1 TTTTGG
26759807 AAAAGTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 16
0.64 0.00 0.36
Matches are distributed among these distances:
11 4 0.14
13 2 0.07
14 1 0.04
15 8 0.29
16 1 0.04
17 2 0.07
19 10 0.36
ACGTcount: A:0.29, C:0.04, G:0.27, T:0.40
Consensus pattern (19 bp):
TTTTGGGGTCAAAATGTAA
Found at i:26759801 original size:60 final size:60
Alignment explanation
Indices: 26759738--26760168 Score: 691
Period size: 60 Copynumber: 7.2 Consensus size: 60
26759728 GGTAAAATGG
* * *
26759738 TAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATG
1 TAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATA
* *
26759798 TAATTTTGGAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATG
1 TAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATA
* * *
26759858 TAATTTTGGAAAAGTTTTAGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTTAAAATA
1 TAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATA
* * *
26759918 TAATTTTAGAAAAGTTTCGAGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATA
1 TAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATA
* * *
26759978 TAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTTAAAATG
1 TAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATA
* *
26760038 CAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTCGGGGTTAAAATA
1 TAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATA
* *
26760098 TAATTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTGGAAAAGTTTTGGGGTCAAAATA
1 TAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATA
26760158 TAATTTCTGGA
1 TAATTT-TGGA
26760169 TTGTTTGGGG
Statistics
Matches: 343, Mismatches: 27, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
60 339 0.99
61 4 0.01
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.38
Consensus pattern (60 bp):
TAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATA
Found at i:26759832 original size:90 final size:90
Alignment explanation
Indices: 26759738--26760168 Score: 700
Period size: 90 Copynumber: 4.8 Consensus size: 90
26759728 GGTAAAATGG
* *
26759738 TAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATT
1 TAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATT
* *
26759803 TTGGAAAAGTTTTAGGGTCAAAATA
66 TTGGAAAAGTTTTGGGGTTAAAATA
* * *
26759828 TAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTAGGGTTAAAATGTAATT
1 TAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATT
26759893 TTGGAAAAGTTTTGGGGTTAAAATA
66 TTGGAAAAGTTTTGGGGTTAAAATA
* * * * * *
26759918 TAATTTTAGAAAAGTTTCGAGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATATAATT
1 TAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATT
*
26759983 TTGGAAAAGTTTTGGGGTTAAAATG
66 TTGGAAAAGTTTTGGGGTTAAAATA
*
26760008 TAATTTTGGAAAAGTTTTGGGGTTAAAATGCAATTTTGGAAAAGTTTTGGGGTCAAAATATAATT
1 TAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATT
*
26760073 TTGGAAAAGTTTCGGGGTTAAAATA
66 TTGGAAAAGTTTTGGGGTTAAAATA
*
26760098 TAATTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTGGAAAAGTTTTGGGGTCAAAATATAATT
1 TAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATT
26760163 TCTGGA
66 T-TGGA
26760169 TTGTTTGGGG
Statistics
Matches: 316, Mismatches: 24, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
90 312 0.99
91 4 0.01
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.38
Consensus pattern (90 bp):
TAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATT
TTGGAAAAGTTTTGGGGTTAAAATA
Found at i:26761256 original size:17 final size:15
Alignment explanation
Indices: 26761218--26761261 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 15
26761208 TCAGTTCCCT
*
26761218 TTTTTATTTAATTAA
1 TTTTTAATTAATTAA
26761233 TTTTTAATTAATTAA
1 TTTTTAATTAATTAA
26761248 TATTATTAATTAAT
1 T-TT-TTAATTAAT
26761262 GCTGCTGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 15 0.58
16 2 0.08
17 9 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTTTAATTAATTAA
Found at i:26761769 original size:18 final size:15
Alignment explanation
Indices: 26761734--26761764 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26761724 ATGGTGTATG
26761734 GAGCTGGTGGTGGCA
1 GAGCTGGTGGTGGCA
26761749 GAGCTGGTGGTGGCA
1 GAGCTGGTGGTGGCA
26761764 G
1 G
26761765 CAGAGGCACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.55, T:0.19
Consensus pattern (15 bp):
GAGCTGGTGGTGGCA
Found at i:26761993 original size:19 final size:18
Alignment explanation
Indices: 26761962--26762000 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
26761952 TAATATTAAA
26761962 TTTTAAATTAAATTCAAT
1 TTTTAAATTAAATTCAAT
*
26761980 TTTTAAATTTAAATTGAAT
1 TTTTAAA-TTAAATTCAAT
26761999 TT
1 TT
26762001 AATGTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTTAAATTAAATTCAAT
Found at i:26763511 original size:18 final size:18
Alignment explanation
Indices: 26763488--26763522 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26763478 TAGTAAATTT
26763488 AATTATTAAATTTTAAAA
1 AATTATTAAATTTTAAAA
* *
26763506 AATTATTTATTTTTAAA
1 AATTATTAAATTTTAAA
26763523 GTTTAATATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
AATTATTAAATTTTAAAA
Found at i:26763701 original size:29 final size:29
Alignment explanation
Indices: 26763666--26763735 Score: 131
Period size: 29 Copynumber: 2.4 Consensus size: 29
26763656 TTGACCTCCC
*
26763666 TAAAATTATAAAAATTTGATTTAATCCTT
1 TAAAATTATAAAAATTTAATTTAATCCTT
26763695 TAAAATTATAAAAATTTAATTTAATCCTT
1 TAAAATTATAAAAATTTAATTTAATCCTT
26763724 TAAAATTATAAA
1 TAAAATTATAAA
26763736 GATATAAACT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (29 bp):
TAAAATTATAAAAATTTAATTTAATCCTT
Found at i:26771292 original size:18 final size:20
Alignment explanation
Indices: 26771264--26771310 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
26771254 GTCAGAACAA
26771264 CTTCTTCTTCTTTT-ATTT-T
1 CTTC-TCTTCTTTTCATTTGT
*
26771283 CTTCTCTTCTTTTCCTTTGT
1 CTTCTCTTCTTTTCATTTGT
26771303 CTTCTCTT
1 CTTCTCTT
26771311 TTCTCTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 9 0.36
19 7 0.28
20 9 0.36
ACGTcount: A:0.02, C:0.28, G:0.02, T:0.68
Consensus pattern (20 bp):
CTTCTCTTCTTTTCATTTGT
Found at i:26784010 original size:28 final size:27
Alignment explanation
Indices: 26783958--26784011 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
26783948 AGGAATCAAA
* *
26783958 TTTTTTTAACTTTTAAGGGATTTAAAT
1 TTTTTTTAACTTTTAAGAGACTTAAAT
26783985 TTTTTTTCAACTTTTAA-AGAGCTTAAA
1 TTTTTTT-AACTTTTAAGAGA-CTTAAA
26784012 ATCTCATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.31, C:0.07, G:0.09, T:0.52
Consensus pattern (27 bp):
TTTTTTTAACTTTTAAGAGACTTAAAT
Found at i:26789307 original size:7 final size:7
Alignment explanation
Indices: 26789280--26789318 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
26789270 AATCCGAACC
*
26789280 TGACCGT
1 TGACCAT
26789287 TGACC-T
1 TGACCAT
26789293 TGACCCAT
1 TGA-CCAT
26789301 TGACCAT
1 TGACCAT
26789308 TGACCAT
1 TGACCAT
26789315 TGAC
1 TGAC
26789319 TTTTTTGGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 4 0.13
7 22 0.73
8 4 0.13
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (7 bp):
TGACCAT
Found at i:26791011 original size:35 final size:35
Alignment explanation
Indices: 26790972--26791041 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
26790962 GAAGATGGAG
*
26790972 GATTTTTTCAATGATTGGGAAGTGAATAATTCAAT
1 GATTTTTTCAAAGATTGGGAAGTGAATAATTCAAT
26791007 GATTTTTTCAAAGATTGGGAAGTGAATAATTCAAT
1 GATTTTTTCAAAGATTGGGAAGTGAATAATTCAAT
26791042 CACTCCATCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.39
Consensus pattern (35 bp):
GATTTTTTCAAAGATTGGGAAGTGAATAATTCAAT
Found at i:26791196 original size:11 final size:11
Alignment explanation
Indices: 26791180--26791212 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
26791170 TCTAAAAAAA
26791180 TAAATATAAAT
1 TAAATATAAAT
*
26791191 TAAATACAAAT
1 TAAATATAAAT
26791202 TAAATATAAAT
1 TAAATATAAAT
26791213 AATATCCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (11 bp):
TAAATATAAAT
Found at i:26791207 original size:22 final size:20
Alignment explanation
Indices: 26791165--26791212 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 20
26791155 ACTCTAAAAG
26791165 ATAAATCTAAAAAAATAAAT
1 ATAAATCTAAAAAAATAAAT
26791185 ATAAAT-TAAATACAAATTAAAT
1 ATAAATCTAAA-A-AAA-TAAAT
26791207 ATAAAT
1 ATAAAT
26791213 AATATCCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.16
20 7 0.28
21 3 0.12
22 11 0.44
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (20 bp):
ATAAATCTAAAAAAATAAAT
Found at i:26791855 original size:17 final size:17
Alignment explanation
Indices: 26791823--26791855 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26791813 TAAATTCTCG
*
26791823 TTATTTTTTCTCTTTTT
1 TTATTTTTTATCTTTTT
26791840 TTATTTTTTAT-TTTTT
1 TTATTTTTTATCTTTTT
26791856 CGGACAGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.85
Consensus pattern (17 bp):
TTATTTTTTATCTTTTT
Found at i:26792482 original size:10 final size:10
Alignment explanation
Indices: 26792452--26792485 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
26792442 CATATAATAA
26792452 ATAAATAAAT
1 ATAAATAAAT
*
26792462 AGAAA-AAAT
1 ATAAATAAAT
26792471 ATAAATAAAT
1 ATAAATAAAT
26792481 ATAAA
1 ATAAA
26792486 AGTAAAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (10 bp):
ATAAATAAAT
Found at i:26792500 original size:24 final size:24
Alignment explanation
Indices: 26792448--26792510 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
26792438 TGGACATATA
* *
26792448 ATAAATAAATA-AATAGAAAAAAT
1 ATAAATAAATATAAAAGAAAAAAG
26792471 ATAAATAAATATAAAAGTAAAAAAG
1 ATAAATAAATATAAAAG-AAAAAAG
*
26792496 A-AAATAAAAATAAAA
1 ATAAATAAATATAAAA
26792511 AATTGGGTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.31
24 17 0.49
25 7 0.20
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (24 bp):
ATAAATAAATATAAAAGAAAAAAG
Found at i:26792505 original size:6 final size:6
Alignment explanation
Indices: 26792465--26792511 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
26792455 AATAAATAGA
* * *
26792465 AAAAAT ATAAAT AAATAT AAAAGT AAAAA- AGAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A-AAAAT AAAAAT AAAAA
26792512 ATTGGGTTGC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
5 1 0.03
6 31 0.94
7 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:26796026 original size:11 final size:11
Alignment explanation
Indices: 26796006--26796037 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
26795996 CTAAAAAGAA
26796006 AAATATAAATT
1 AAATATAAATT
*
26796017 AAATACAAATT
1 AAATATAAATT
26796028 AAATATAAAT
1 AAATATAAAT
26796038 AATATTCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (11 bp):
AAATATAAATT
Found at i:26798444 original size:23 final size:22
Alignment explanation
Indices: 26798414--26798478 Score: 87
Period size: 22 Copynumber: 2.9 Consensus size: 22
26798404 TCTTCATTTA
26798414 TTAGCACGTTTAGTGCTCTT-CGT
1 TTAGCACGTTT-GTGCT-TTCCGT
26798437 TTAGCACGTTTGTGCTTTCCGT
1 TTAGCACGTTTGTGCTTTCCGT
* *
26798459 ATAGCACCTTTGTGCTTTCC
1 TTAGCACGTTTGTGCTTTCC
26798479 ATTCATTAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
21 2 0.05
22 26 0.67
23 11 0.28
ACGTcount: A:0.12, C:0.25, G:0.20, T:0.43
Consensus pattern (22 bp):
TTAGCACGTTTGTGCTTTCCGT
Found at i:26802854 original size:22 final size:22
Alignment explanation
Indices: 26802829--26802883 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
26802819 TTGATCAAGA
*
26802829 TGGTATTCTATGCTTTCGGGGT
1 TGGTATTCTATGCTTCCGGGGT
26802851 TGGTATTCTATGCTTCCGGGGT
1 TGGTATTCTATGCTTCCGGGGT
* *
26802873 CGGTACTCTAT
1 TGGTATTCTAT
26802884 TCCAAGGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.11, C:0.18, G:0.29, T:0.42
Consensus pattern (22 bp):
TGGTATTCTATGCTTCCGGGGT
Found at i:26805053 original size:14 final size:13
Alignment explanation
Indices: 26805026--26805069 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
26805016 ACCCAGATTC
26805026 GACCCTGACCGTT
1 GACCCTGACCGTT
26805039 GACCCTGACCCGTT
1 GACCCTGA-CCGTT
**
26805053 GATCATTGACCGTT
1 GA-CCCTGACCGTT
26805067 GAC
1 GAC
26805070 TTTTTCGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 9 0.33
14 14 0.52
15 4 0.15
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (13 bp):
GACCCTGACCGTT
Found at i:26808842 original size:29 final size:28
Alignment explanation
Indices: 26808810--26808913 Score: 79
Period size: 29 Copynumber: 3.6 Consensus size: 28
26808800 TTTCGGGGGA
26808810 AAAAATGGAATTTTGGTGAAACTGAGGTT
1 AAAAATGGAATTTTGGTGAAA-TGAGGTT
* * *
26808839 AAAAATGGGATTTT-G-GAAAGTTTAGGGGT
1 AAAAATGGAATTTTGGTGAAA--TGA-GGTT
* *
26808868 -AAAATGGTAATTTTTGGTGAAATCGGGGTC
1 AAAAATGG-AA-TTTTGGTGAAAT-GAGGTT
26808898 AAAAATGGAATTTTGG
1 AAAAATGGAATTTTGG
26808914 AAAGTTTAGG
Statistics
Matches: 58, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
27 4 0.07
28 10 0.17
29 23 0.40
30 9 0.16
31 8 0.14
32 4 0.07
ACGTcount: A:0.36, C:0.03, G:0.30, T:0.32
Consensus pattern (28 bp):
AAAAATGGAATTTTGGTGAAATGAGGTT
Found at i:26808902 original size:59 final size:58
Alignment explanation
Indices: 26808811--26809036 Score: 264
Period size: 59 Copynumber: 3.9 Consensus size: 58
26808801 TTCGGGGGAA
* *
26808811 AAAATGG-AATTTTGGTGAAA-CTGAGGTTAAAAATGGGATTTTGGAAAGTTTAGGGGT
1 AAAATGGTAATTTTGGTGAAATC-GAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGT
*
26808868 AAAATGGTAATTTTTGGTGAAATCGGGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGT
1 AAAATGGTAA-TTTTGGTGAAATCGAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGT
* * * * *
26808927 AAAATGGTAATTTT-G-GAAGTTTTGGGGTCAAAAATGGAATTCTAGG-AAGTTTGGGGGT
1 AAAATGGTAATTTTGGTGAA--ATCGAGGTCAAAAATGGAATT-TTGGAAAGTTTAGGGGT
* * *
26808985 AAAACGGTAATTTTTGGTGAAACCGAGGTCAAAAATTGAATTTTGGAAAGTT
1 AAAATGGTAA-TTTTGGTGAAATCGAGGTCAAAAATGGAATTTTGGAAAGTT
26809037 CGAGGACTAG
Statistics
Matches: 145, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
56 3 0.02
57 8 0.06
58 48 0.33
59 81 0.56
60 2 0.01
61 3 0.02
ACGTcount: A:0.35, C:0.04, G:0.30, T:0.32
Consensus pattern (58 bp):
AAAATGGTAATTTTGGTGAAATCGAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGT
Found at i:26808930 original size:29 final size:29
Alignment explanation
Indices: 26808838--26808988 Score: 136
Period size: 30 Copynumber: 5.2 Consensus size: 29
26808828 AAACTGAGGT
*
26808838 TAAAAATGGGATTTTGGAAAGTTTAGGGG
1 TAAAAATGGAATTTTGGAAAGTTTAGGGG
*
26808867 T-AAAATGGTAATTTTTGGTGAAA---TCGGGG
1 TAAAAATGG-AA-TTTT-G-GAAAGTTTAGGGG
26808896 TCAAAAATGGAATTTTGGAAAGTTTAGGGG
1 T-AAAAATGGAATTTTGGAAAGTTTAGGGG
*
26808926 T-AAAATGGTAATTTTGG-AAGTTTTGGGG
1 TAAAAATGG-AATTTTGGAAAGTTTAGGGG
* *
26808954 TCAAAAATGGAATTCTAGG-AAGTTTGGGGG
1 T-AAAAATGGAATT-TTGGAAAGTTTAGGGG
26808984 TAAAA
1 TAAAA
26808989 CGGTAATTTT
Statistics
Matches: 103, Mismatches: 6, Indels: 26
0.76 0.04 0.19
Matches are distributed among these distances:
27 4 0.04
28 26 0.25
29 28 0.27
30 33 0.32
31 8 0.08
32 4 0.04
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.32
Consensus pattern (29 bp):
TAAAAATGGAATTTTGGAAAGTTTAGGGG
Found at i:26808996 original size:29 final size:28
Alignment explanation
Indices: 26808856--26808997 Score: 103
Period size: 28 Copynumber: 4.9 Consensus size: 28
26808846 GGATTTTGGA
*
26808856 AAGTTTAGGGGTAAAATGGTAATTTTTGGTG
1 AAGTTTAGGGGTAAAATGGTAA--TTTAG-G
* * *
26808887 AA--ATCGGGGTCAAAAATGG-AATTTTGG
1 AAGTTTAGGGGT--AAAATGGTAATTTAGG
*
26808914 AAAGTTTAGGGGTAAAATGGTAATTTTGG
1 -AAGTTTAGGGGTAAAATGGTAATTTAGG
*
26808943 AAGTTTTGGGGTCAAAAATGG-AATTCTAGG
1 AAGTTTAGGGGT--AAAATGGTAATT-TAGG
* *
26808973 AAGTTTGGGGGTAAAACGGTAATTT
1 AAGTTTAGGGGTAAAATGGTAATTT
26808998 TTGGTGAAAC
Statistics
Matches: 92, Mismatches: 9, Indels: 23
0.74 0.07 0.19
Matches are distributed among these distances:
27 1 0.01
28 31 0.34
29 22 0.24
30 29 0.32
31 9 0.10
ACGTcount: A:0.33, C:0.04, G:0.31, T:0.32
Consensus pattern (28 bp):
AAGTTTAGGGGTAAAATGGTAATTTAGG
Found at i:26810096 original size:3 final size:3
Alignment explanation
Indices: 26810090--26810149 Score: 111
Period size: 3 Copynumber: 19.7 Consensus size: 3
26810080 ATTTAAAATA
26810090 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26810138 TAGT TAT TAT TA
1 TA-T TAT TAT TA
26810150 ATGTCATTAA
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 53 0.95
4 3 0.05
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:26810894 original size:28 final size:28
Alignment explanation
Indices: 26810880--26810949 Score: 87
Period size: 23 Copynumber: 2.7 Consensus size: 28
26810870 TTACCATAAT
26810880 ATTAAATTTAAATTAAATTCAAACTAAA
1 ATTAAATTTAAATTAAATTCAAACTAAA
26810908 ATTAAATTTAAA-TAAA---AAA-TAAA
1 ATTAAATTTAAATTAAATTCAAACTAAA
* *
26810931 TTTAAATTTAAAATAAATT
1 ATTAAATTTAAATTAAATT
26810950 TGAATTTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
23 15 0.39
24 7 0.18
27 4 0.11
28 12 0.32
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (28 bp):
ATTAAATTTAAATTAAATTCAAACTAAA
Found at i:26810944 original size:7 final size:6
Alignment explanation
Indices: 26810881--26810959 Score: 58
Period size: 6 Copynumber: 13.8 Consensus size: 6
26810871 TACCATAATA
* * * * *
26810881 TTAAAT TTAAA- TTAAAT TCAAA- CTAAAA TTAAAT TTAAA- TAAAAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* * *
26810926 ATAAAT TTAAAT TTAAA- ATAAAT TTGAAT TTAAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAA
26810960 ATAAACTTAA
Statistics
Matches: 55, Mismatches: 14, Indels: 8
0.71 0.18 0.10
Matches are distributed among these distances:
5 16 0.29
6 39 0.71
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (6 bp):
TTAAAT
Found at i:26810955 original size:17 final size:17
Alignment explanation
Indices: 26810881--26810987 Score: 101
Period size: 17 Copynumber: 6.3 Consensus size: 17
26810871 TACCATAATA
*
26810881 TTAAATTTAAATTAAAT
1 TTAAATTTAAAATAAAT
* *
26810898 TCAAA-CTAAAATTAAAT
1 TTAAATTTAAAA-TAAAT
**
26810915 TTAAATAAAAAATAAAT
1 TTAAATTTAAAATAAAT
26810932 TTAAATTTAAAATAAAT
1 TTAAATTTAAAATAAAT
* *
26810949 TTGAATTTAAAATAAAC
1 TTAAATTTAAAATAAAT
**
26810966 TT-AATTTCAAAGCAAAT
1 TTAAATTT-AAAATAAAT
26810983 TTAAA
1 TTAAA
26810988 ATGGTTTGGG
Statistics
Matches: 73, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
16 9 0.12
17 58 0.79
18 6 0.08
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (17 bp):
TTAAATTTAAAATAAAT
Found at i:26812972 original size:27 final size:28
Alignment explanation
Indices: 26812942--26813034 Score: 82
Period size: 28 Copynumber: 3.4 Consensus size: 28
26812932 TCCTTAACAT
*
26812942 AGATAGCCACAGAGGTGT-CCAT-ATAC
1 AGATAGCCACAGAGGTATCCCATCATAC
* *
26812968 AAGATAGTCACAAAGGTATCCCATCATAC
1 -AGATAGCCACAGAGGTATCCCATCATAC
* * ** *
26812997 AGATAGCGACAGAGGCATCCGTTCATAT
1 AGATAGCCACAGAGGTATCCCATCATAC
*
26813025 AGATAACCAC
1 AGATAGCCAC
26813035 GAAGGTGTTC
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
27 15 0.29
28 33 0.63
29 4 0.08
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (28 bp):
AGATAGCCACAGAGGTATCCCATCATAC
Found at i:26813001 original size:28 final size:27
Alignment explanation
Indices: 26812942--26813003 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
26812932 TCCTTAACAT
* *
26812942 AGATAGCCACAGAGGTGTCCATATACA
1 AGATAGCCACAAAGGTATCCATATACA
*
26812969 AGATAGTCACAAAGGTATCCCATCATAC-
1 AGATAGCCACAAAGGTAT-CCAT-ATACA
26812997 AGATAGC
1 AGATAGC
26813004 GACAGAGGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 15 0.52
28 10 0.34
29 4 0.14
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (27 bp):
AGATAGCCACAAAGGTATCCATATACA
Found at i:26817755 original size:27 final size:26
Alignment explanation
Indices: 26817718--26817773 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
26817708 TCAAATCTTG
*
26817718 TAATATCATCATAT-ACATATCATTCAA
1 TAATATAATCAT-TCACAT-TCATTCAA
26817745 TAATATAATCATTCCACATTCATTCAA
1 TAATATAATCATT-CACATTCATTCAA
26817772 TA
1 TA
26817774 CATTGCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 1 0.04
27 21 0.81
28 4 0.15
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.38
Consensus pattern (26 bp):
TAATATAATCATTCACATTCATTCAA
Found at i:26819541 original size:22 final size:23
Alignment explanation
Indices: 26819506--26819548 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
26819496 AGTTAGTGGT
26819506 AAAAATGTGACTTTTATTATTGA
1 AAAAATGTGACTTTTATTATTGA
* *
26819529 AAAAATG-GGCTTTTGTTATT
1 AAAAATGTGACTTTTATTATT
26819549 CTCACCGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (23 bp):
AAAAATGTGACTTTTATTATTGA
Found at i:26821635 original size:32 final size:31
Alignment explanation
Indices: 26821593--26821713 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 31
26821583 ACAGTCGTAC
* *
26821593 ATAAACAGTTCGCATACAATCAGCTCACATAT
1 ATAATCAGTTCGCATACAAT-AGTTCACATAT
* *** *
26821625 ATAAAT-AGTTCGCAAACAA-ACAACACACAT
1 AT-AATCAGTTCGCATACAATAGTTCACATAT
* *
26821655 ATAATCAATTCGCATACACTAGTTCAC--AT
1 ATAATCAGTTCGCATACAATAGTTCACATAT
26821684 ATAATCAGTTCGCATACAATAGTTCACATA
1 ATAATCAGTTCGCATACAATAGTTCACATA
26821714 CAATAAGTTT
Statistics
Matches: 70, Mismatches: 14, Indels: 11
0.74 0.15 0.12
Matches are distributed among these distances:
29 30 0.43
30 19 0.27
31 5 0.07
32 14 0.20
33 2 0.03
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.26
Consensus pattern (31 bp):
ATAATCAGTTCGCATACAATAGTTCACATAT
Found at i:26821713 original size:14 final size:14
Alignment explanation
Indices: 26821667--26821718 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
26821657 AATCAATTCG
*
26821667 CATACACTAGTTCA
1 CATACAATAGTTCA
* *
26821681 CATATAATCAGTTCG
1 CATACAAT-AGTTCA
26821696 CATACAATAGTTCA
1 CATACAATAGTTCA
26821710 CATACAATA
1 CATACAATA
26821719 AGTTTAACCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (14 bp):
CATACAATAGTTCA
Found at i:26821968 original size:17 final size:18
Alignment explanation
Indices: 26821948--26821990 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
26821938 GTTCGCACAT
26821948 AACATATGTTCACAT-GC
1 AACATATGTTCACATAGC
* *
26821965 AACATAAGTTCACATAGT
1 AACATATGTTCACATAGC
26821983 AACATATG
1 AACATATG
26821991 CTCCTACAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.28
Consensus pattern (18 bp):
AACATATGTTCACATAGC
Found at i:26827249 original size:43 final size:43
Alignment explanation
Indices: 26827201--26827341 Score: 194
Period size: 43 Copynumber: 3.3 Consensus size: 43
26827191 TCACTTGGCG
* *
26827201 TAAATGGAAGACTAATGTCTCGGGATGAGCATGAGATTATGCA
1 TAAATGGAAGACTCATGTCTCGGGATGAGCATGAGATTATGTA
*
26827244 TAAATGGAAGACTCATGTCTCAGGATGAGCATGAGATTATGTA
1 TAAATGGAAGACTCATGTCTCGGGATGAGCATGAGATTATGTA
* ** ** *
26827287 TAAATGGAAGACTCGTGAGTCGAAATGAGCATGAGATTATGTT
1 TAAATGGAAGACTCATGTCTCGGGATGAGCATGAGATTATGTA
26827330 TAAA-GGAAGACT
1 TAAATGGAAGACT
26827342 TATGACTCTA
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 8 0.09
43 80 0.91
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (43 bp):
TAAATGGAAGACTCATGTCTCGGGATGAGCATGAGATTATGTA
Found at i:26828048 original size:21 final size:21
Alignment explanation
Indices: 26828024--26828077 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
26828014 AGAGTTCTTA
26828024 GTATCGGTAGAAG-AATGACTT
1 GTATCGGTAGAAGTAAT-ACTT
* *
26828045 GTATCGGTAAAAGTTATACTT
1 GTATCGGTAGAAGTAATACTT
*
26828066 GTATCGATAGAA
1 GTATCGGTAGAA
26828078 CTAGCATAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.31
Consensus pattern (21 bp):
GTATCGGTAGAAGTAATACTT
Found at i:26830551 original size:14 final size:14
Alignment explanation
Indices: 26830532--26830561 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26830522 ACTATGTTTT
26830532 TTATTTATTTTTAA
1 TTATTTATTTTTAA
*
26830546 TTATTTGTTTTTAA
1 TTATTTATTTTTAA
26830560 TT
1 TT
26830562 TTTTTTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (14 bp):
TTATTTATTTTTAA
Found at i:26832468 original size:10 final size:10
Alignment explanation
Indices: 26832449--26832487 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
26832439 ATTCGTCTAT
26832449 TTTTTTATAA
1 TTTTTTATAA
*
26832459 TTTTTAATAA
1 TTTTTTATAA
26832469 TATTTTTATAA
1 T-TTTTTATAA
26832480 TTTATTTA
1 TTT-TTTA
26832488 ATCAAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 12 0.48
11 13 0.52
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:26834389 original size:14 final size:14
Alignment explanation
Indices: 26834370--26834398 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26834360 ATCACCATAT
26834370 AGTAATGTTTATTA
1 AGTAATGTTTATTA
26834384 AGTAATGTTTATTA
1 AGTAATGTTTATTA
26834398 A
1 A
26834399 TAAGGGTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (14 bp):
AGTAATGTTTATTA
Found at i:26834641 original size:20 final size:19
Alignment explanation
Indices: 26834597--26834638 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
26834587 AAATCTTGTC
* *
26834597 ATTTCTTTATTTTTCCTAA
1 ATTTATTTATTTTTCATAA
*
26834616 ATTTATTTATTTTTTATAA
1 ATTTATTTATTTTTCATAA
26834635 ATTT
1 ATTT
26834639 TATATAAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTTATTTATTTTTCATAA
Found at i:26836084 original size:16 final size:16
Alignment explanation
Indices: 26836053--26836082 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26836043 AAAGTATTTA
26836053 AATTTACTTATTAAAT
1 AATTTACTTATTAAAT
26836069 AATTTA-TTATTAAA
1 AATTTACTTATTAAA
26836083 ATTAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTTACTTATTAAAT
Found at i:26836684 original size:29 final size:29
Alignment explanation
Indices: 26836651--26836708 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26836641 TCCGTATAGA
26836651 ATCAAAATATTATTTCTATTCTTTTTCTT
1 ATCAAAATATTATTTCTATTCTTTTTCTT
26836680 ATCAAAATATTATTTCTATTCTTTTTCTT
1 ATCAAAATATTATTTCTATTCTTTTTCTT
26836709 TCTTCCTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.59
Consensus pattern (29 bp):
ATCAAAATATTATTTCTATTCTTTTTCTT
Found at i:26844613 original size:19 final size:18
Alignment explanation
Indices: 26844587--26844633 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
26844577 AATAAATTTT
26844587 ATTAAATTTTAATAAAAA
1 ATTAAATTTTAATAAAAA
*
26844605 ATATAAA-TTTAATTAAAA
1 AT-TAAATTTTAATAAAAA
26844623 ATTAGAATTTT
1 ATTA-AATTTT
26844634 TTTAAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 2 0.08
18 16 0.64
19 7 0.28
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTTTAATAAAAA
Found at i:26844902 original size:21 final size:21
Alignment explanation
Indices: 26844876--26844950 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 21
26844866 TTAGTACGAT
26844876 AATTTTTATAATTTTTTTACG
1 AATTTTTATAATTTTTTTACG
*
26844897 AA-TTTTAT-ATTTCTTTAC-
1 AATTTTTATAATTTTTTTACG
* *
26844915 ATTTTTTATAATTTTCTTACG
1 AATTTTTATAATTTTTTTACG
*
26844936 -ATTTTATAAAATTTT
1 AATTTT-TATAATTTT
26844951 ATAATTTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
18 1 0.02
19 15 0.34
20 18 0.41
21 10 0.23
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (21 bp):
AATTTTTATAATTTTTTTACG
Found at i:26844904 original size:20 final size:20
Alignment explanation
Indices: 26844879--26844944 Score: 75
Period size: 19 Copynumber: 3.4 Consensus size: 20
26844869 GTACGATAAT
26844879 TTTTATAATTTTTTTACGAA
1 TTTTATAATTTTTTTACGAA
* *
26844899 TTTTAT-ATTTCTTTAC-ATT
1 TTTTATAATTTTTTTACGA-A
*
26844918 TTTTATAATTTTCTTACG-A
1 TTTTATAATTTTTTTACGAA
26844937 TTTTATAA
1 TTTTATAA
26844945 AATTTTATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
18 1 0.03
19 23 0.61
20 14 0.37
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTTATAATTTTTTTACGAA
Found at i:26844913 original size:10 final size:9
Alignment explanation
Indices: 26844899--26845094 Score: 54
Period size: 10 Copynumber: 20.3 Consensus size: 9
26844889 TTTTTACGAA
26844899 TTTTATATT
1 TTTTATATT
*
26844908 TCTTTACATT
1 T-TTTATATT
26844918 TTTTATAATT
1 TTTTAT-ATT
*
26844928 TTCTTACGATT
1 TT-TTA-TATT
* **
26844939 TTATA-AAA
1 TTTTATATT
26844947 TTTTATAATTT
1 TTTTAT-A-TT
*
26844958 TTTTCTATAT
1 TTTTATAT-T
* *
26844968 TTCTATATA
1 TTTTATATT
26844977 TTTTATAATT
1 TTTTAT-ATT
* * *
26844987 TTATAGAAT
1 TTTTATATT
26844996 TTTTATAATT
1 TTTTAT-ATT
*
26845006 TTTTCTAATT
1 TTTTAT-ATT
* *
26845016 TTTAATAAAAT
1 TTT--TATATT
**
26845027 TTAAATATT
1 TTTTATATT
*
26845036 TTTTATAGT
1 TTTTATATT
**
26845045 TTTTATTAACA
1 TTTTA-T-ATT
*
26845056 TTTAATATT
1 TTTTATATT
*
26845065 TTTTATAAT
1 TTTTATATT
26845074 TTTT-TATT
1 TTTTATATT
26845082 TTTTATCATT
1 TTTTAT-ATT
26845092 TTT
1 TTT
26845095 GCCACATGTC
Statistics
Matches: 131, Mismatches: 40, Indels: 31
0.65 0.20 0.15
Matches are distributed among these distances:
8 12 0.09
9 44 0.34
10 52 0.40
11 22 0.17
12 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTATATT
Found at i:26845037 original size:30 final size:29
Alignment explanation
Indices: 26844972--26845077 Score: 108
Period size: 30 Copynumber: 3.6 Consensus size: 29
26844962 CTATATTTCT
* * *
26844972 ATATATTTTATAA-TTTT-ATAGAATTTTT
1 ATATTTTTTATAATTTTTAATA-AAATTTA
*
26845000 ATAATTTTTTCTAATTTTTAATAAAATTTAA
1 AT-ATTTTTTATAATTTTTAATAAAATTT-A
* * *
26845031 ATATTTTTTATAGTTTTTATTAACATTTA
1 ATATTTTTTATAATTTTTAATAAAATTTA
26845060 ATATTTTTTATAATTTTT
1 ATATTTTTTATAATTTTT
26845078 TATTTTTTAT
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
28 2 0.03
29 27 0.42
30 31 0.48
31 5 0.08
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (29 bp):
ATATTTTTTATAATTTTTAATAAAATTTA
Done.