Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38174113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1000 characters in sequence are not A, C, G, or T
File 87 of 126
Found at i:26845081 original size:17 final size:17
Alignment explanation
Indices: 26845061--26845094 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26845051 TAACATTTAA
26845061 TATTTTTTATAATTTTT
1 TATTTTTTATAATTTTT
*
26845078 TATTTTTTATCATTTTT
1 TATTTTTTATAATTTTT
26845095 GCCACATGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (17 bp):
TATTTTTTATAATTTTT
Found at i:26845081 original size:30 final size:30
Alignment explanation
Indices: 26844972--26845077 Score: 110
Period size: 29 Copynumber: 3.6 Consensus size: 30
26844962 CTATATTTCT
* * **
26844972 ATATATTTTATAA-TTTTA-TAGAATTTTT
1 ATATTTTTTATAATTTTTATTAAAATTTAA
* *
26845000 ATAATTTTTTCTAATTTTTAATAAAATTTAA
1 AT-ATTTTTTATAATTTTTATTAAAATTTAA
* *
26845031 ATATTTTTTATAGTTTTTATTAACATTT-A
1 ATATTTTTTATAATTTTTATTAAAATTTAA
26845060 ATATTTTTTATAATTTTT
1 ATATTTTTTATAATTTTT
26845078 TATTTTTTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
28 2 0.03
29 27 0.42
30 27 0.42
31 9 0.14
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (30 bp):
ATATTTTTTATAATTTTTATTAAAATTTAA
Found at i:26848922 original size:43 final size:43
Alignment explanation
Indices: 26848852--26848983 Score: 112
Period size: 42 Copynumber: 3.1 Consensus size: 43
26848842 GAGAGAGTGT
26848852 GAAAGCAT-GTCCAGTTAGGCGTA-CTTTCTACTAACATGTCAAG
1 GAAAGC-TCGTCCAGTTAGGCG-AGCTTTCTACTAACATGTCAAG
* * *
26848895 GAAAGCTCGTCCAGTTGGGCGAGCTTTCTACATAA-TTGGC-AG
1 GAAAGCTCGTCCAGTTAGGCGAGCTTTCTAC-TAACATGTCAAG
** * * * * *
26848937 GAAATTTCATCCAATTTGGCAAGCTTTCTACTAACAT-TCAGG
1 GAAAGCTCGTCCAGTTAGGCGAGCTTTCTACTAACATGTCAAG
26848979 GAAAG
1 GAAAG
26848984 TGCACCCAGT
Statistics
Matches: 71, Mismatches: 13, Indels: 11
0.75 0.14 0.12
Matches are distributed among these distances:
41 4 0.06
42 35 0.49
43 29 0.41
44 3 0.04
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (43 bp):
GAAAGCTCGTCCAGTTAGGCGAGCTTTCTACTAACATGTCAAG
Found at i:26849619 original size:17 final size:17
Alignment explanation
Indices: 26849592--26849673 Score: 85
Period size: 17 Copynumber: 4.8 Consensus size: 17
26849582 ATAATTTAAT
26849592 TTTTAAA-TTAAATTTA
1 TTTTAAATTTAAATTTA
26849608 TTTTAAATTTAAATTTA
1 TTTTAAATTTAAATTTA
** * *
26849625 CATAAAATTTAAGTTTA
1 TTTTAAATTTAAATTTA
*
26849642 TTATAAATTTAAATTTA
1 TTTTAAATTTAAATTTA
*
26849659 TAAATTAAATTTAAA
1 T--TTTAAATTTAAA
26849674 AAGTCCAAGT
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
16 7 0.13
17 35 0.67
19 10 0.19
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (17 bp):
TTTTAAATTTAAATTTA
Found at i:26849620 original size:6 final size:6
Alignment explanation
Indices: 26849593--26849673 Score: 64
Period size: 6 Copynumber: 14.0 Consensus size: 6
26849583 TAATTTAATT
* * * *
26849593 TTTAAA -TTAAA TTT-AT TTTAAA TTTAAA TTTACA -TAAAA TTTAAG
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
26849638 TTT--A TTATAAA TTTAAA TTTATAA ATTAAA TTTAAA
1 TTTAAA TT-TAAA TTTAAA TTTA-AA TTTAAA TTTAAA
26849674 AAGTCCAAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
4 2 0.03
5 13 0.22
6 35 0.60
7 8 0.14
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:26850330 original size:3 final size:3
Alignment explanation
Indices: 26850322--26850362 Score: 64
Period size: 3 Copynumber: 13.0 Consensus size: 3
26850312 TTATAAGTTT
26850322 TAA TAA TAA TAA CTAA TAA TAA CTAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA -TAA TAA TAA -TAA TAA TAA TAA TAA TAA
26850363 ATGTTTAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 30 0.83
4 6 0.17
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:26850338 original size:10 final size:10
Alignment explanation
Indices: 26850325--26850362 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
26850315 TAAGTTTTAA
26850325 TAATAATAAC
1 TAATAATAAC
26850335 TAATAATAAC
1 TAATAATAAC
26850345 TAATAATAA-
1 TAATAATAAC
26850354 TAATAATAA
1 TAATAATAA
26850363 ATGTTTAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
9 9 0.32
10 19 0.68
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (10 bp):
TAATAATAAC
Found at i:26850338 original size:13 final size:12
Alignment explanation
Indices: 26850322--26850362 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 12
26850312 TTATAAGTTT
26850322 TAATAATAATAA
1 TAATAATAATAA
26850334 CTAATAATAACTAA
1 -TAATAATAA-TAA
26850348 TAATAATAATAA
1 TAATAATAATAA
26850360 TAA
1 TAA
26850363 ATGTTTAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.22
13 18 0.67
14 3 0.11
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (12 bp):
TAATAATAATAA
Found at i:26850340 original size:23 final size:22
Alignment explanation
Indices: 26850320--26850373 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
26850310 GGTTATAAGT
26850320 TTTAATAATAATAACTAATAATA
1 TTTAATAATAATAA-TAATAATA
** *
26850343 ACTAATAATAATAATAATAAATG
1 TTTAATAATAATAATAAT-AATA
26850366 TTTAATAA
1 TTTAATAA
26850374 AAAAAAAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
22 4 0.16
23 21 0.84
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (22 bp):
TTTAATAATAATAATAATAATA
Found at i:26851316 original size:162 final size:162
Alignment explanation
Indices: 26851138--26851448 Score: 439
Period size: 162 Copynumber: 1.9 Consensus size: 162
26851128 TTCAATTTAA
*
26851138 TCCTTTGACTGTTTGACT-AAACCAGAGGTTGCCACGTGTCA-TGTTTTGGCTTATTCATGCATT
1 TCCTTTGACTGTTTGACTGAAA-CAGAGGCTGCCACGTGTCACT-TTTTGGCTTATTCATGCATT
* * * *
26851201 TAGTCCTTGATATTTTTAATTTGTTTTAATTTAATCCCTAAATCAATTTTTGTTAAATTACAAAA
64 TAATCCTTGATATTTTTAATTTGTTTTAATTTAATCCCTAAATCAACTTTTATTAAAGTACAAAA
26851266 TTGGCCCAATAA-TTTTTCAAGGTTTATAAATTAG
129 TTGGCCCAA-AATTTTTTCAAGGTTTATAAATTAG
* * * *
26851300 TCCTTTGACTGTTTGACTGCAACAGGGGCTGCCATGTGTCACTTTTTGGCTTATTTATGCATTTA
1 TCCTTTGACTGTTTGACTGAAACAGAGGCTGCCACGTGTCACTTTTTGGCTTATTCATGCATTTA
** * * *
26851365 ATCCTTTTTATTTTTAATTTGTTTTAATTTAATCCTTAAATTAACTTTTATTTAAGTACAAAATT
66 ATCCTTGATATTTTTAATTTGTTTTAATTTAATCCCTAAATCAACTTTTATTAAAGTACAAAATT
*
26851430 GGTCCAAAATTTTTTCAAG
131 GGCCCAAAATTTTTTCAAG
26851449 ATTTTCAAAT
Statistics
Matches: 131, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
161 2 0.02
162 126 0.96
163 3 0.02
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (162 bp):
TCCTTTGACTGTTTGACTGAAACAGAGGCTGCCACGTGTCACTTTTTGGCTTATTCATGCATTTA
ATCCTTGATATTTTTAATTTGTTTTAATTTAATCCCTAAATCAACTTTTATTAAAGTACAAAATT
GGCCCAAAATTTTTTCAAGGTTTATAAATTAG
Found at i:26851591 original size:30 final size:30
Alignment explanation
Indices: 26851545--26851866 Score: 318
Period size: 30 Copynumber: 10.8 Consensus size: 30
26851535 GATTGTCCAG
*
26851545 AAATTACATTTCGACCCCAAAACTTTCTAA
1 AAATTACATTTTGACCCCAAAACTTTCTAA
* *
26851575 AAATTATATTTTGACCCCAAAACTTTCTGA
1 AAATTACATTTTGACCCCAAAACTTTCTAA
** ** *
26851605 AAATTACATTTT-AATCCTTAACTTT-TCCA
1 AAATTACATTTTGACCCCAAAACTTTCT-AA
* *
26851634 AAATTATATTTTGACCCC-AAACTTT-TCCA
1 AAATTACATTTTGACCCCAAAACTTTCT-AA
*
26851663 AAATTACATTTTGACCCCAAAACTTT-TCCA
1 AAATTACATTTTGACCCCAAAACTTTCT-AA
**
26851693 AAATTACATTTCAACCCCAAAACTTTCTAA
1 AAATTACATTTTGACCCCAAAACTTTCTAA
* * *
26851723 AAATTATATTTTGACCCCGAAACTTTCCAA
1 AAATTACATTTTGACCCCAAAACTTTCTAA
* *
26851753 AAATTACATTTTGACTCCAAAACTTT-TCCA
1 AAATTACATTTTGACCCCAAAACTTTCT-AA
* * *
26851783 AAATTACATTTTGACCCTAAAACTTTTTGA
1 AAATTACATTTTGACCCCAAAACTTTCTAA
* * *
26851813 AAATTATACTTCGACCCCAAAACTTTC-AA
1 AAATTACATTTTGACCCCAAAACTTTCTAA
*
26851842 AAATTACCATTTT-ACCCCCAAACTT
1 AAATTA-CATTTTGACCCCAAAACTT
26851867 CCCTAAATCC
Statistics
Matches: 245, Mismatches: 40, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
28 1 0.00
29 66 0.27
30 176 0.72
31 2 0.01
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.35
Consensus pattern (30 bp):
AAATTACATTTTGACCCCAAAACTTTCTAA
Found at i:26852012 original size:59 final size:59
Alignment explanation
Indices: 26851840--26852040 Score: 174
Period size: 59 Copynumber: 3.4 Consensus size: 59
26851830 CAAAACTTTC
* * * * * *
26851840 AAAAATTACCATTTTACCCCCAAACTTCCCTAAATCCCATTTTTAACCCCGATTTCACC
1 AAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTGACCCCGATTTCACA
** ** * * * ** ** *
26851899 AAACCTTACTGTTTTGCCTCC-GAACTTTCCAAAATTTCATTTTTGACCTTGATTTTGCC
1 AAAAATTACCATTTTACC-CCTAAACTTTCCAAAATTCCATTTTTGACCCCGATTTCACA
* *
26851958 AAAATTTACCATTTTATTCCCTAAACTTTCC-AAATTCCATTTTT-AGCCCCGATTTCACA
1 AAAAATTACCATTTTA-CCCCTAAACTTTCCAAAATTCCATTTTTGA-CCCCGATTTCACA
26852017 AAAAATTACCATTTTACCCCTAAA
1 AAAAATTACCATTTTACCCCTAAA
26852041 AACCCAAATT
Statistics
Matches: 108, Mismatches: 30, Indels: 9
0.73 0.20 0.06
Matches are distributed among these distances:
58 8 0.07
59 89 0.82
60 11 0.10
ACGTcount: A:0.30, C:0.29, G:0.04, T:0.36
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTGACCCCGATTTCACA
Found at i:26855143 original size:24 final size:24
Alignment explanation
Indices: 26855116--26855163 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
26855106 GTTCGCAAAC
*
26855116 AAGCTCGTTTATTGACTCGCTTAT
1 AAGCTCGTTTATTAACTCGCTTAT
** *
26855140 AAGCTTTTTTATTAACTCGTTTAT
1 AAGCTCGTTTATTAACTCGCTTAT
26855164 GACTGTTGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.48
Consensus pattern (24 bp):
AAGCTCGTTTATTAACTCGCTTAT
Found at i:26859398 original size:6 final size:6
Alignment explanation
Indices: 26859387--26859412 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26859377 TAATTTAAGA
26859387 ATAAAT ATAAAT ATAAAT ATAAAT AT
1 ATAAAT ATAAAT ATAAAT ATAAAT AT
26859413 TTCTTTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
ATAAAT
Found at i:26859902 original size:19 final size:19
Alignment explanation
Indices: 26859855--26859923 Score: 63
Period size: 19 Copynumber: 3.6 Consensus size: 19
26859845 TTACAAAAAA
*
26859855 AAAAATCAAAATAA--TTT
1 AAAATTCAAAATAATTTTT
*
26859872 AGAAATTGAAAATAATTTTT
1 A-AAATTCAAAATAATTTTT
*
26859892 AAAATTCAAAAT-ATTTATA
1 AAAATTCAAAATAATTT-TT
26859911 AAAATTCTAAAAT
1 AAAATTC-AAAAT
26859924 TTGTATCTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
17 1 0.02
18 15 0.35
19 18 0.42
20 9 0.21
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:26860164 original size:23 final size:23
Alignment explanation
Indices: 26860121--26860165 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26860111 GTAACAAGAT
**
26860121 TTTAATTTAACATTATTAATTTG
1 TTTAATTTAACATTAACAATTTG
26860144 TTTAATTTAAC-TTGAACAATTT
1 TTTAATTTAACATT-AACAATTT
26860166 CACTCAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (23 bp):
TTTAATTTAACATTAACAATTTG
Found at i:26861205 original size:16 final size:18
Alignment explanation
Indices: 26861186--26861223 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
26861176 TTATTACGAT
26861186 AAAAATCTT-GTG-AGAA
1 AAAAATCTTAGTGAAGAA
*
26861202 AAAATTCTTAGTGAAGAA
1 AAAAATCTTAGTGAAGAA
26861220 AAAA
1 AAAA
26861224 TAGTACACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 3 0.16
18 8 0.42
ACGTcount: A:0.55, C:0.05, G:0.16, T:0.24
Consensus pattern (18 bp):
AAAAATCTTAGTGAAGAA
Found at i:26861221 original size:18 final size:16
Alignment explanation
Indices: 26861186--26861224 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
26861176 TTATTACGAT
26861186 AAAAA-TCTTGTGAGA
1 AAAAATTCTTGTGAGA
26861201 AAAAATTCTTAGTGAAGA
1 AAAAATTCTT-GTG-AGA
26861219 AAAAAT
1 AAAAAT
26861225 AGTACACTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.24
16 4 0.19
17 3 0.14
18 9 0.43
ACGTcount: A:0.54, C:0.05, G:0.15, T:0.26
Consensus pattern (16 bp):
AAAAATTCTTGTGAGA
Found at i:26864862 original size:21 final size:20
Alignment explanation
Indices: 26864838--26864889 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
26864828 GAGTTTGTTA
26864838 TATCGGTAGAAGTAATAATT
1 TATCGGTAGAAGTAATAATT
* * *
26864858 GTATCGGTAGTAGTCATACTT
1 -TATCGGTAGAAGTAATAATT
26864879 TATCGGTAGAA
1 TATCGGTAGAA
26864890 CCTTCCCAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.35
Consensus pattern (20 bp):
TATCGGTAGAAGTAATAATT
Found at i:26868722 original size:14 final size:14
Alignment explanation
Indices: 26868703--26868743 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
26868693 ACAAAGAATG
26868703 AATAAATATACGAA
1 AATAAATATACGAA
26868717 AATAAATATGA-GAA
1 AATAAATAT-ACGAA
26868731 AGATAAA-ATACGA
1 A-ATAAATATACGA
26868744 GTTATGAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 1 0.04
14 17 0.71
15 6 0.25
ACGTcount: A:0.63, C:0.05, G:0.12, T:0.20
Consensus pattern (14 bp):
AATAAATATACGAA
Found at i:26868868 original size:29 final size:28
Alignment explanation
Indices: 26868831--26868941 Score: 93
Period size: 28 Copynumber: 3.9 Consensus size: 28
26868821 AGAAAAAAAG
* *
26868831 GGGTCAAAAATGAAGTTTTAGAGAGTTTA
1 GGGTTAAAAATGAA-TTTTAGAAAGTTTA
*
26868860 GGGTT-AAAATGTAATTTTAAAAAGTTTTA
1 GGGTTAAAAATG-AATTTTAGAAAG-TTTA
* *
26868889 GGGGTAAAAAT-CATTTTAGGAAAGTTTA
1 GGGTTAAAAATGAATTTTA-GAAAGTTTA
* *
26868917 GGGTAAAAATATG-ATTTTTGAAAGT
1 GGGTTAAAA-ATGAATTTTAGAAAGT
26868942 CAAGGGTCAA
Statistics
Matches: 67, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
28 37 0.55
29 25 0.37
30 5 0.07
ACGTcount: A:0.40, C:0.02, G:0.23, T:0.35
Consensus pattern (28 bp):
GGGTTAAAAATGAATTTTAGAAAGTTTA
Found at i:26869010 original size:29 final size:29
Alignment explanation
Indices: 26868854--26869210 Score: 170
Period size: 30 Copynumber: 12.3 Consensus size: 29
26868844 AGTTTTAGAG
* * *
26868854 AGTTT-AGGGTTAAAATGTAATTTTAAAA
1 AGTTTGAGGGTCAAAATGTGATTTTTAAA
* * *
26868882 AGTTTTAGGGGT-AAAA-ATCA-TTTTAGGAA
1 AGTTTGA-GGGTCAAAATGTGATTTTTA--AA
* * *
26868911 AGTTT-AGGGTAAAAATATGATTTTTGAA
1 AGTTTGAGGGTCAAAATGTGATTTTTAAA
** *
26868939 AG-TCAAGGGTCAAAATGTG-TTTTTAGA
1 AGTTTGAGGGTCAAAATGTGATTTTTAAA
* *
26868966 AGTTCGGGGGTCAAAATGTGATTTTTAAA
1 AGTTTGAGGGTCAAAATGTGATTTTTAAA
* * * * *
26868995 AGTTTGAGGATAAAAATATAATTTTTGAGA
1 AGTTTGAGGGTCAAAATGTGATTTTT-AAA
* * **
26869025 AGTTCG-GGGGCGAAAATGTGATTTTTGGA
1 AGTTTGAGGGTC-AAAATGTGATTTTTAAA
* *
26869054 AGTTTG-GAGGT-AAAATGTAATTTTTGAGA
1 AGTTTGAG-GGTCAAAATGTGATTTTT-AAA
* * *
26869083 AG-TTCAGGGGCAAAAATGTAATTTTTGAGAA
1 AGTTTGAGGGTC-AAAATGTGATTTTT-A-AA
* *
26869114 A-TTTGA-GGTTAAAATGTGATTTTTGAGA
1 AGTTTGAGGGTCAAAATGTGATTTTT-AAA
*
26869142 AGTTT-AGGGGTCAAAATGTGATTTTAGAAA
1 AGTTTGA-GGGTCAAAATGTGATTTT-TAAA
* *
26869172 AGTTT-AGAGGTCAAAATATGATTTTTGGAA
1 AGTTTGAG-GGTCAAAATGTGATTTTT-AAA
26869202 AG-TTGAGGG
1 AGTTTGAGGG
26869211 ACCTTTTGGG
Statistics
Matches: 258, Mismatches: 45, Indels: 51
0.73 0.13 0.14
Matches are distributed among these distances:
27 17 0.07
28 63 0.24
29 80 0.31
30 93 0.36
31 5 0.02
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (29 bp):
AGTTTGAGGGTCAAAATGTGATTTTTAAA
Found at i:26869041 original size:30 final size:30
Alignment explanation
Indices: 26868950--26869145 Score: 154
Period size: 29 Copynumber: 6.7 Consensus size: 30
26868940 GTCAAGGGTC
*
26868950 AAAATGT-GTTTTT-AGAAGTTCGGGGGTC-
1 AAAATGTAATTTTTGAGAAGTTCGGGGG-CA
* * * * **
26868978 AAAATGTGATTTTT-AAAAGTTTGAGGATA
1 AAAATGTAATTTTTGAGAAGTTCGGGGGCA
* *
26869007 AAAATATAATTTTTGAGAAGTTCGGGGGCG
1 AAAATGTAATTTTTGAGAAGTTCGGGGGCA
* * * *
26869037 AAAATGTGATTTTTG-GAAGTTTGGAGG-T
1 AAAATGTAATTTTTGAGAAGTTCGGGGGCA
*
26869065 AAAATGTAATTTTTGAGAAGTTCAGGGGCA
1 AAAATGTAATTTTTGAGAAGTTCGGGGGCA
* * * **
26869095 AAAATGTAATTTTTGAGAAATT-TGAGGTT
1 AAAATGTAATTTTTGAGAAGTTCGGGGGCA
*
26869124 AAAATGTGATTTTTGAGAAGTT
1 AAAATGTAATTTTTGAGAAGTT
26869146 TAGGGGTCAA
Statistics
Matches: 132, Mismatches: 31, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
28 21 0.16
29 68 0.52
30 43 0.33
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (30 bp):
AAAATGTAATTTTTGAGAAGTTCGGGGGCA
Found at i:26869041 original size:59 final size:57
Alignment explanation
Indices: 26868958--26869198 Score: 247
Period size: 59 Copynumber: 4.1 Consensus size: 57
26868948 TCAAAATGTG
26868958 TTTTT-AGAAGTTCGGGGGTCAAAATGTGATTTTTAAAAGTTT-GAGGATAAAAATATAA
1 TTTTTGAGAAGTTCGGGGG-CAAAATGTGATTTTTAAAAGTTTAGAGG-T-AAAATATAA
** * *
26869016 TTTTTGAGAAGTTCGGGGGCGAAAATGTGATTTTTGGAAGTTTGGAGGTAAAATGTAA
1 TTTTTGAGAAGTTCGGGGGC-AAAATGTGATTTTTAAAAGTTTAGAGGTAAAATATAA
* * * *
26869074 TTTTTGAGAAGTTCAGGGGCAAAAATGTAATTTTTGAGAAA-TTT-GAGGTTAAAATGTGA
1 TTTTTGAGAAGTTCGGGGGC-AAAATGTGATTTTT-A-AAAGTTTAGAGG-TAAAATATAA
* * * *
26869133 TTTTTGAGAAGTTTAGGGGTCAAAATGTGATTTTAGAAAAGTTTAGAGGTCAAAATATGA
1 TTTTTGAGAAG-TTCGGGGGCAAAATGTGATTTT-TAAAAGTTTAGAGGT-AAAATATAA
26869193 TTTTTG
1 TTTTTG
26869199 GAAAGTTGAG
Statistics
Matches: 157, Mismatches: 15, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
58 53 0.34
59 74 0.47
60 30 0.19
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (57 bp):
TTTTTGAGAAGTTCGGGGGCAAAATGTGATTTTTAAAAGTTTAGAGGTAAAATATAA
Found at i:26869160 original size:30 final size:30
Alignment explanation
Indices: 26868910--26869198 Score: 244
Period size: 30 Copynumber: 9.9 Consensus size: 30
26868900 CATTTTAGGA
* *
26868910 AAGTTTA-GGGTAAAAATATGATTTTTGA-
1 AAGTTTAGGGGTCAAAATGTGATTTTTGAG
* *
26868938 AAG-TCAAGGGTCAAAATGTG-TTTTT-AG
1 AAGTTTAGGGGTCAAAATGTGATTTTTGAG
** *
26868965 AAGTTCGGGGGTCAAAATGTGATTTTT-AA
1 AAGTTTAGGGGTCAAAATGTGATTTTTGAG
* * * *
26868994 AAGTTT-GAGGATAAAAATATAATTTTTGAG
1 AAGTTTAG-GGGTCAAAATGTGATTTTTGAG
* *
26869024 AAG-TTCGGGGGCGAAAATGTGATTTTTG-G
1 AAGTTTAGGGGTC-AAAATGTGATTTTTGAG
*
26869053 AAGTTT-GGAGGT-AAAATGTAATTTTTGAG
1 AAGTTTAGG-GGTCAAAATGTGATTTTTGAG
* *
26869082 AAGTTCAGGGG-CAAAAATGTAATTTTTGAG
1 AAGTTTAGGGGTC-AAAATGTGATTTTTGAG
* * *
26869112 AAATTT-GAGGTTAAAATGTGATTTTTGAG
1 AAGTTTAGGGGTCAAAATGTGATTTTTGAG
* *
26869141 AAGTTTAGGGGTCAAAATGTGATTTTAGAA
1 AAGTTTAGGGGTCAAAATGTGATTTTTGAG
* *
26869171 AAGTTTAGAGGTCAAAATATGATTTTTG
1 AAGTTTAGGGGTCAAAATGTGATTTTTG
26869199 GAAAGTTGAG
Statistics
Matches: 212, Mismatches: 33, Indels: 30
0.77 0.12 0.11
Matches are distributed among these distances:
26 1 0.00
27 10 0.05
28 44 0.21
29 68 0.32
30 89 0.42
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (30 bp):
AAGTTTAGGGGTCAAAATGTGATTTTTGAG
Found at i:26870993 original size:17 final size:16
Alignment explanation
Indices: 26870971--26871026 Score: 67
Period size: 17 Copynumber: 3.4 Consensus size: 16
26870961 CTTTTGATAT
*
26870971 TTTAAATTTAAAAAAAA
1 TTTAAA-TTAAAATAAA
* *
26870988 TTTAAACTTAAGATGAA
1 TTTAAA-TTAAAATAAA
26871005 TTTAAATTAAAATAAA
1 TTTAAATTAAAATAAA
26871021 TTTAAA
1 TTTAAA
26871027 AATGGGTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
16 14 0.42
17 19 0.58
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.38
Consensus pattern (16 bp):
TTTAAATTAAAATAAA
Found at i:26871502 original size:39 final size:39
Alignment explanation
Indices: 26871439--26871896 Score: 371
Period size: 39 Copynumber: 11.8 Consensus size: 39
26871429 AATGATTGCA
* * * *
26871439 ATCTACCCTAGGCTCTGGGTAAAAGATTGACTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGACTGATGGTG
* * * *
26871478 ATCTGCCTCAGGCTCGGGGTAAAAGATCGAATGGCT-GTA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGACT-GATGGTG
* * * *
26871517 ATTTGCCCTAGGCTCGGGGTAAGAGATTGACTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGACTGATGGTG
* * * * * * *
26871556 ATCTGCCCCAAGCTTGGGGTAAGAGATCGAATGGTTGTA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGACTGATGGTG
* * * * * *
26871595 ATCTACCCCAGACTTGAGGTAAAAGATTGGCTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGACTGATGGTG
* *
26871634 ATCTGCCCCAAGCTAGGGGTAAAAGATCGA---ATGGCTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGACTGATGG-TG
* *
26871671 CAATCTGCCCCAGGCTTGGGGTAAGAGATCGA---ATGGCTG
1 --ATCTGCCCCAGGCTCGGGGTAAAAGATCGACTGATGG-TG
* * *
26871710 CAATTTGCCCCAGGCTGGGGGTAAGAGATCGACTGATGGTG
1 --ATCTGCCCCAGGCTCGGGGTAAAAGATCGACTGATGGTG
* * * *
26871751 ATCTGCCCCAAGCTC-GGGTAAAAGATTGGCTGATGGGG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGACTGATGGTG
26871789 ATCTGCCCCAGGCTCGGGGTAAAAGATCGA---ATGGCTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGACTGATGG-TG
* * * * *
26871826 CAATCTGCTCCAAGCTCGGGGTAAGAGATTGATTGATGGTG
1 --ATCTGCCCCAGGCTCGGGGTAAAAGATCGACTGATGGTG
*
26871867 ATCTGCCTCAGGCTCGGGGTAAAAGATCGA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGA
26871897 ATCTTTAATC
Statistics
Matches: 336, Mismatches: 68, Indels: 30
0.77 0.16 0.07
Matches are distributed among these distances:
36 8 0.02
37 3 0.01
38 35 0.10
39 276 0.82
40 2 0.01
41 4 0.01
42 8 0.02
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (39 bp):
ATCTGCCCCAGGCTCGGGGTAAAAGATCGACTGATGGTG
Found at i:26871555 original size:78 final size:78
Alignment explanation
Indices: 26871438--26871898 Score: 518
Period size: 78 Copynumber: 5.9 Consensus size: 78
26871428 GAATGATTGC
* * * *
26871438 AATCTACCCTAGGCTCTGGGTAAAAGATTGACTGATGGTGATCTGCCTCAGGCTCGGGGTAAAAG
1 AATCTGCCCCAGGCTCGGGGTAAAAGATTGACTGATGGTGATCTGCCCCAGGCTCGGGGTAAAAG
26871503 ATCGAATGGCTGT
66 ATCGAATGGCTGT
* * * * * *
26871516 AATTTGCCCTAGGCTCGGGGTAAGAGATTGACTGATGGTGATCTGCCCCAAGCTTGGGGTAAGAG
1 AATCTGCCCCAGGCTCGGGGTAAAAGATTGACTGATGGTGATCTGCCCCAGGCTCGGGGTAAAAG
*
26871581 ATCGAATGGTTGT
66 ATCGAATGGCTGT
* * * * * * *
26871594 AATCTACCCCAGACTTGAGGTAAAAGATTGGCTGATGGTGATCTGCCCCAAGCTAGGGGTAAAAG
1 AATCTGCCCCAGGCTCGGGGTAAAAGATTGACTGATGGTGATCTGCCCCAGGCTCGGGGTAAAAG
*
26871659 ATCGAATGGCTGC
66 ATCGAATGGCTGT
* * * * *
26871672 AATCTGCCCCAGGCTTGGGGTAAGAGATCGA---ATGGCTGCAATTTGCCCCAGGCTGGGGGTAA
1 AATCTGCCCCAGGCTCGGGGTAAAAGATTGACTGATGG-TG--ATCTGCCCCAGGCTCGGGGTAA
* * *
26871734 GAGATCGACT-GATGGT
63 AAGATCGAATGGCT-GT
* * * *
26871750 GATCTGCCCCAAGCTC-GGGTAAAAGATTGGCTGATGGGGATCTGCCCCAGGCTCGGGGTAAAAG
1 AATCTGCCCCAGGCTCGGGGTAAAAGATTGACTGATGGTGATCTGCCCCAGGCTCGGGGTAAAAG
*
26871814 ATCGAATGGCTGC
66 ATCGAATGGCTGT
* * * * *
26871827 AATCTGCTCCAAGCTCGGGGTAAGAGATTGATTGATGGTGATCTGCCTCAGGCTCGGGGTAAAAG
1 AATCTGCCCCAGGCTCGGGGTAAAAGATTGACTGATGGTGATCTGCCCCAGGCTCGGGGTAAAAG
26871892 ATCGAAT
66 ATCGAAT
26871899 CTTTAATCCG
Statistics
Matches: 320, Mismatches: 54, Indels: 18
0.82 0.14 0.05
Matches are distributed among these distances:
75 4 0.01
76 2 0.01
77 56 0.17
78 253 0.79
79 1 0.00
80 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (78 bp):
AATCTGCCCCAGGCTCGGGGTAAAAGATTGACTGATGGTGATCTGCCCCAGGCTCGGGGTAAAAG
ATCGAATGGCTGT
Found at i:26883637 original size:19 final size:19
Alignment explanation
Indices: 26883610--26883650 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
26883600 AATATAGGGA
26883610 TAAAAATGAGC-ATGCAAAT
1 TAAAAATGAGCTATGC-AAT
*
26883629 TAAATATGAGCTATGCAAT
1 TAAAAATGAGCTATGCAAT
26883648 TAA
1 TAA
26883651 TGATAAAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.27
Consensus pattern (19 bp):
TAAAAATGAGCTATGCAAT
Found at i:26883915 original size:30 final size:29
Alignment explanation
Indices: 26883837--26884264 Score: 281
Period size: 29 Copynumber: 14.8 Consensus size: 29
26883827 TTGGAGAGTT
* * **
26883837 AGGGTTAAAATGT-AATTTTAGAAAGTTTT
1 AGGGTAAAAATGTGATTTTTAG-AAGTTCG
* *
26883866 AGGGTAAAAATGTCATTTTGTGGAAGTTC-
1 AGGGTAAAAATGTGATTTT-TAGAAGTTCG
*
26883895 AGGGTAAAAATATGATTTTT-GAAAGTT-G
1 AGGGTAAAAATGTGATTTTTAG-AAGTTCG
* * *
26883923 GGGGTTAAAATGTGATTTTTAGAAGTTCA
1 AGGGTAAAAATGTGATTTTTAGAAGTTCG
*
26883952 AGGGTCAAAATGTGATTTTTAGAAGTTCG
1 AGGGTAAAAATGTGATTTTTAGAAGTTCG
* * *
26883981 AGGGCAAAAATATAATTTTTAAGAAGTTCG
1 AGGGTAAAAATGTGATTTTT-AGAAGTTCG
* *
26884011 AGGGTGAAAATGTGATTTTT-GAAAGTTTG
1 AGGGTAAAAATGTGATTTTTAG-AAGTTCG
* * *
26884040 -GGG-GAAAATGTAATTTTTAAGAAGTTTG
1 AGGGTAAAAATGTGATTTTT-AGAAGTTCG
* ** * * *
26884068 GGGGTCTAAATATGATTTTTGGAAGTTTG
1 AGGGTAAAAATGTGATTTTTAGAAGTTCG
* * **
26884097 -GGG-GAAAATGTAATTTTTGAGAAGTTTT
1 AGGGTAAAAATGTGATTTTT-AGAAGTTCG
* * *
26884125 AAGGT-AAAATGTAATTTTTTAAAAGTTCG
1 AGGGTAAAAATGTGA-TTTTTAGAAGTTCG
* * *
26884154 AGGGTCAAAATGTGATTTTTGGAAGTTTTG
1 AGGGTAAAAATGTGATTTTTAGAAG-TTCG
* **
26884184 -GGG-AAAAATGTAATTTTTTAGAAGTTTA
1 AGGGTAAAAATGTGA-TTTTTAGAAGTTCG
* *
26884212 AGGGTAAAAATGTAATTTTTGAGAAGTT-T
1 AGGGTAAAAATGTGATTTTT-AGAAGTTCG
*
26884241 AGTGGTCAAAATGTGA-TTTTAGAA
1 AG-GGTAAAAATGTGATTTTTAGAA
26884265 AAGTTTAGGG
Statistics
Matches: 326, Mismatches: 50, Indels: 47
0.77 0.12 0.11
Matches are distributed among these distances:
27 26 0.08
28 64 0.20
29 145 0.44
30 89 0.27
31 2 0.01
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.37
Consensus pattern (29 bp):
AGGGTAAAAATGTGATTTTTAGAAGTTCG
Found at i:26883956 original size:57 final size:59
Alignment explanation
Indices: 26883837--26884291 Score: 326
Period size: 57 Copynumber: 7.8 Consensus size: 59
26883827 TTGGAGAGTT
* * * ** * *
26883837 AGGGTTAAAATGTAATTTTAGAAAGTTTTAGGGTAAAAATGTCATTTTGT-GGAAGTTC-
1 AGGGTCAAAATGTGATTTTTGAAAGTTTGGGGGTAAAAATGTAATTTT-TAAGAAGTTCA
* * * *
26883895 AGGGTAAAAATATGATTTTTGAAAG-TTGGGGGTTAAAATGTGATTTTT-AGAAGTTCA
1 AGGGTCAAAATGTGATTTTTGAAAGTTTGGGGGTAAAAATGTAATTTTTAAGAAGTTCA
* * * * *
26883952 AGGGTCAAAATGTGATTTTT-AGAAGTTCGAGGGCAAAAATATAATTTTTAAGAAGTTCG
1 AGGGTCAAAATGTGATTTTTGA-AAGTTTGGGGGTAAAAATGTAATTTTTAAGAAGTTCA
* **
26884011 AGGGTGAAAATGTGATTTTTGAAAGTTTGGGGG--AAAATGTAATTTTTAAGAAGTTTG
1 AGGGTCAAAATGTGATTTTTGAAAGTTTGGGGGTAAAAATGTAATTTTTAAGAAGTTCA
* * * * * *
26884068 GGGGTCTAAATATGATTTTTGGAAGTTTGGGGG--AAAATGTAATTTTTGAGAAGTTTTA
1 AGGGTCAAAATGTGATTTTTGAAAGTTTGGGGGTAAAAATGTAATTTTTAAGAAG-TTCA
* * * * * * * *
26884126 A-GGT-AAAATGTAATTTTTTAAAAGTTCGAGGGTCAAAATGTGATTTTT-GGAAGTT-T
1 AGGGTCAAAATGTGA-TTTTTGAAAGTTTGGGGGTAAAAATGTAATTTTTAAGAAGTTCA
* ** * * ** * *
26884182 TGGGGAAAAATGTAATTTTTTAGAAGTTTAAGGGTAAAAATGTAATTTTTGAGAAGTT-T
1 AGGGTCAAAATGTGATTTTTGA-AAGTTTGGGGGTAAAAATGTAATTTTTAAGAAGTTCA
* * * * *
26884241 AGTGGTCAAAATGTGATTTTAGAAAAGTTTAGGGGTTAAAATATGATTTTT
1 AG-GGTCAAAATGTGATTTTTG-AAAGTTTGGGGGTAAAAATGTAATTTTT
26884292 GGAAAGTTTA
Statistics
Matches: 323, Mismatches: 59, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
56 15 0.05
57 135 0.42
58 77 0.24
59 57 0.18
60 38 0.12
61 1 0.00
ACGTcount: A:0.35, C:0.02, G:0.25, T:0.38
Consensus pattern (59 bp):
AGGGTCAAAATGTGATTTTTGAAAGTTTGGGGGTAAAAATGTAATTTTTAAGAAGTTCA
Found at i:26884269 original size:30 final size:29
Alignment explanation
Indices: 26883810--26884304 Score: 273
Period size: 29 Copynumber: 17.1 Consensus size: 29
26883800 GAAAAAAACG
* * *
26883810 GGGTCAAAAATG-AAGTTTTGGAGAG-TTA
1 GGGT-AAAAATGTAATTTTTGAAAAGTTTA
* *
26883838 GGGTTAAAATGTAATTTTAG-AAAGTTTTA
1 GGGTAAAAATGTAATTTTTGAAAAG-TTTA
* * *
26883867 GGGTAAAAATGTCATTTTGTG-GAAGTTCA
1 GGGTAAAAATGTAATTTT-TGAAAAGTTTA
* * **
26883896 GGGTAAAAATATGATTTTTG-AAAGTTGG
1 GGGTAAAAATGTAATTTTTGAAAAGTTTA
* * * *
26883924 GGGTTAAAATGTGATTTTT-AGAAGTTCAA
1 GGGTAAAAATGTAATTTTTGAAAAGTT-TA
* * * *
26883953 GGGTCAAAATGTGATTTTT-AGAAGTTCGA
1 GGGTAAAAATGTAATTTTTGAAAAGTT-TA
* * *
26883982 GGGCAAAAATATAATTTTT-AAGAAGTTCGA
1 GGGTAAAAATGTAATTTTTGAA-AAGTT-TA
* *
26884012 GGGTGAAAATGTGATTTTTG-AAAGTTT-
1 GGGTAAAAATGTAATTTTTGAAAAGTTTA
** *
26884039 GGGGGAAAATGTAATTTTT-AAGAAGTTTGG
1 GGGTAAAAATGTAATTTTTGAA-AAGTTT-A
** * * *
26884069 GGGTCTAAATATGATTTTTG-GAAGTTT-
1 GGGTAAAAATGTAATTTTTGAAAAGTTTA
** *
26884096 GGGGGAAAATGTAATTTTTGAGAAGTTTTA
1 GGGTAAAAATGTAATTTTTGAAAAG-TTTA
* * *
26884126 AGGT-AAAATGTAATTTTTTAAAAGTTCGA
1 GGGTAAAAATGTAATTTTTGAAAAGTT-TA
* * * *
26884155 GGGTCAAAATGTGATTTTTG-GAAGTTTT
1 GGGTAAAAATGTAATTTTTGAAAAGTTTA
* * *
26884183 GGGGAAAAATGTAATTTTTTAGAAGTTTAA
1 GGGTAAAAATGTAATTTTTGAAAAGTTT-A
*
26884213 GGGTAAAAATGTAATTTTTGAGAAGTTTA
1 GGGTAAAAATGTAATTTTTGAAAAGTTTA
* * *
26884242 GTGGTCAAAATGTGATTTTAGAAAAGTTTA
1 G-GGTAAAAATGTAATTTTTGAAAAGTTTA
* * * *
26884272 GGGGTTAAAATATGATTTTTGGAAAGTTTA
1 -GGGTAAAAATGTAATTTTTGAAAAGTTTA
26884302 GGG
1 GGG
26884305 ACCTTTTAGG
Statistics
Matches: 375, Mismatches: 70, Indels: 43
0.77 0.14 0.09
Matches are distributed among these distances:
27 42 0.11
28 67 0.18
29 134 0.36
30 131 0.35
31 1 0.00
ACGTcount: A:0.34, C:0.02, G:0.26, T:0.37
Consensus pattern (29 bp):
GGGTAAAAATGTAATTTTTGAAAAGTTTA
Found at i:26885131 original size:17 final size:17
Alignment explanation
Indices: 26885109--26885165 Score: 78
Period size: 17 Copynumber: 3.4 Consensus size: 17
26885099 CATTTTATAT
26885109 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
* * *
26885126 TTTAAACTTAAGATGAA
1 TTTAAATTTAAAATAAA
*
26885143 TTTAAATCTAAAATAAA
1 TTTAAATTTAAAATAAA
26885160 TTTAAA
1 TTTAAA
26885166 AATGGGTTCA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.39
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:26889593 original size:15 final size:16
Alignment explanation
Indices: 26889566--26889596 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
26889556 ATTTTATTTT
26889566 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
26889582 AATAAT-AATTTTAAA
1 AATAATAAATTTTAAA
26889597 TAGTATTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:26890087 original size:27 final size:26
Alignment explanation
Indices: 26890048--26890098 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
26890038 TATAAGGATT
26890048 TATGACATATTTTAATCTAGTATAAAAA
1 TATGACATATTTTAAT-TA-TATAAAAA
26890076 TATGA-ATATTTTAATTATATAAA
1 TATGACATATTTTAATTATATAAA
26890099 TATGAGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.26
26 2 0.09
27 10 0.43
28 5 0.22
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (26 bp):
TATGACATATTTTAATTATATAAAAA
Found at i:26893592 original size:21 final size:21
Alignment explanation
Indices: 26893568--26893619 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
26893558 TGAGAAAATA
26893568 CTACCGATACAAGT-ATGACTT
1 CTACCGATACAAGTCATG-CTT
* *
26893589 CTACCGAAACATGTCATGCTT
1 CTACCGATACAAGTCATGCTT
26893610 CTACCGATAC
1 CTACCGATAC
26893620 TAAAAACTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 24 0.89
22 3 0.11
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (21 bp):
CTACCGATACAAGTCATGCTT
Found at i:26894817 original size:201 final size:193
Alignment explanation
Indices: 26894372--26894825 Score: 493
Period size: 195 Copynumber: 2.3 Consensus size: 193
26894362 TACCAATACT
* *
26894372 CGATGCTGCTCACACGAGCTGTCGAGGACTCACAACGTATGCAGTACCCCAACCATCGATACGGT
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCACAACATATGCAGTACCTCAACCATCGATACGGT
* * * * *
26894437 GCCTGTCTATTTTATAAATTATTCCCTAATGATGCTGCTCACATGAGCTGTCGAGAGTATGCATA
66 ACCTGTCTA--TTATAAACTATTCCCTAACGATGCTACTCACATGAGCTGTCGAGAATATGCATA
* * * * *
26894502 AAGCATAGTCCTAGCCATCGTAAGACCTATAATCCATTTAGGATCCATATCTCTTTCCCGAGTCA
129 AAGCATAATCCTAACCATCATAAGACCTATAATCCATTTAGGATCCATATCTCTTTCCCAAATCA
* * *
26894567 CGATGCTGCTCACACGAGCTGTTGAGGACTCATAACATATGCAGTACCTCAGCCATCGATACGGT
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCACAACATATGCAGTACCTCAACCATCGATACGGT
* * *
26894632 ATCTGTGC-A-TAT-AACTGTTCCCTAACGATGCTACTCACATGAGCTGTCGAGAATATGCACTT
66 ACCTGT-CTATTATAAACTATTCCCTAACGATGCTACTCACATGAGCTGTCGAGAATATGCA-TA
* * * * *
26894694 ATGCATAAAT-CTCAACCTTCATAGGGCCTGTAATCCATTTAGGATCCATATTTCTTTTCTCATT
129 AAGCAT-AATCCT-AACCATCATAAGACCTATAATCCATTTAGGATCCATA--TC---TCT--TT
26894758 CCTCAAATCA
185 CC-CAAATCA
* * * * * *
26894768 GGATGTTGCTCATATGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAACCATCG
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCACAACATATGCAGTACCTCAACCATCG
26894826 CGTCGGTTTC
Statistics
Matches: 215, Mismatches: 32, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
191 42 0.20
192 11 0.05
193 33 0.15
195 67 0.31
196 1 0.00
198 3 0.01
200 4 0.02
201 54 0.25
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (193 bp):
CGATGCTGCTCACACGAGCTGTCGAGGACTCACAACATATGCAGTACCTCAACCATCGATACGGT
ACCTGTCTATTATAAACTATTCCCTAACGATGCTACTCACATGAGCTGTCGAGAATATGCATAAA
GCATAATCCTAACCATCATAAGACCTATAATCCATTTAGGATCCATATCTCTTTCCCAAATCA
Found at i:26896032 original size:19 final size:17
Alignment explanation
Indices: 26895989--26896037 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 17
26895979 GTTTTGTATG
26895989 AAATTGAA-GAGAAAGA
1 AAATTGAAGGAGAAAGA
26896005 AAA--GAAGGAGAAAGA
1 AAATTGAAGGAGAAAGA
*
26896020 CCAAATTGAAGGAAAAAG
1 --AAATTGAAGGAGAAAG
26896038 GAAAGGAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
14 3 0.11
15 8 0.30
16 3 0.11
17 3 0.11
19 10 0.37
ACGTcount: A:0.61, C:0.04, G:0.27, T:0.08
Consensus pattern (17 bp):
AAATTGAAGGAGAAAGA
Found at i:26897158 original size:18 final size:18
Alignment explanation
Indices: 26897135--26897171 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26897125 TTTGTGATCA
26897135 AAATTGAAAGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
* *
26897153 AAATTGGAATTGAAAGTG
1 AAATTGAAAGTGAAAGTG
26897171 A
1 A
26897172 TATGAATTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:26908866 original size:78 final size:78
Alignment explanation
Indices: 26908772--26908922 Score: 284
Period size: 78 Copynumber: 1.9 Consensus size: 78
26908762 TCTATTGTAG
26908772 GAAGACTGATACTGGTATAGTTGTTTTGTTCTATTATCATTTTAATATCTTTTGATGAGATTTGT
1 GAAGACTGATACTGGTATAGTTGTTTTGTTCTATTATCATTTTAATATCTTTTGATGAGATTTGT
26908837 TCTCTTGCTCTAA
66 TCTCTTGCTCTAA
* *
26908850 GAAGATTGATATTGGTATAGTTGTTTTGTTCTATTATCATTTTAATATCTTTTGATGAGATTTGT
1 GAAGACTGATACTGGTATAGTTGTTTTGTTCTATTATCATTTTAATATCTTTTGATGAGATTTGT
26908915 TCTCTTGC
66 TCTCTTGC
26908923 ATCAGGAGCT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 71 1.00
ACGTcount: A:0.23, C:0.10, G:0.17, T:0.50
Consensus pattern (78 bp):
GAAGACTGATACTGGTATAGTTGTTTTGTTCTATTATCATTTTAATATCTTTTGATGAGATTTGT
TCTCTTGCTCTAA
Found at i:26912416 original size:21 final size:21
Alignment explanation
Indices: 26912390--26912441 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
26912380 TGAGACAATA
*
26912390 CTACCGATACAAG-TATGACTT
1 CTACCGATACAAGCCATG-CTT
* *
26912411 CTACCGAAACATGCCATGCTT
1 CTACCGATACAAGCCATGCTT
26912432 CTACCGATAC
1 CTACCGATAC
26912442 TAAAAACTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.25
Consensus pattern (21 bp):
CTACCGATACAAGCCATGCTT
Found at i:26913251 original size:52 final size:52
Alignment explanation
Indices: 26913180--26913368 Score: 256
Period size: 52 Copynumber: 3.7 Consensus size: 52
26913170 ATTCCATTTA
* * * * *
26913180 ATACTCACGATGGCACATAGTCATCGGACCTCTTAATCCGTGAAGGAATCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAAGGATTCAT
* * * * *
26913232 ATACTCACTATGACGCATAGTCATTGGACTTTTTAATCCATAAACGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAAGGATTCAT
26913284 ATACTCACGATTG-CACATAGTCATCGGACCTTTTAATCCATAAAGGATTCAT
1 ATACTCACGA-TGACACATAGTCATCGGACCTTTTAATCCATAAAGGATTCAT
*
26913336 ATACTCACGAT-ACACATAGTCATCAGACCTTTT
1 ATACTCACGATGACACATAGTCATCGGACCTTTT
26913369 CTTTATTTAC
Statistics
Matches: 119, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
51 21 0.18
52 96 0.81
53 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAAGGATTCAT
Found at i:26922194 original size:21 final size:21
Alignment explanation
Indices: 26922165--26922271 Score: 83
Period size: 21 Copynumber: 5.1 Consensus size: 21
26922155 CAAGCAAGAA
26922165 CCCTGTATTACACTCCAGTGC
1 CCCTGTATTACACTCCAGTGC
*
26922186 CCCTTTATTGA-ACTCC-GATGC
1 CCCTGTATT-ACACTCCAG-TGC
*
26922207 CCCTGTATTGCACTCCAGTGC
1 CCCTGTATTACACTCCAGTGC
* * * * * *
26922228 CCTTATGTTGCACTTCGGTGC
1 CCCTGTATTACACTCCAGTGC
* * *
26922249 CCCTGTATTGCATTCCGGTGC
1 CCCTGTATTACACTCCAGTGC
26922270 CC
1 CC
26922272 TTGAATTGTA
Statistics
Matches: 69, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
20 1 0.01
21 66 0.96
22 2 0.03
ACGTcount: A:0.14, C:0.36, G:0.19, T:0.32
Consensus pattern (21 bp):
CCCTGTATTACACTCCAGTGC
Found at i:26922224 original size:42 final size:42
Alignment explanation
Indices: 26922165--26922313 Score: 158
Period size: 42 Copynumber: 3.5 Consensus size: 42
26922155 CAAGCAAGAA
* * *
26922165 CCCTGTATTACACTCCAGTGCCCCTT-TATTGAACTCCGATGC
1 CCCTGTATTGCACTCCAGTG-CCCTTATATTGAACTTCGGTGC
* *
26922207 CCCTGTATTGCACTCCAGTGCCCTTATGTTGCACTTCGGTGC
1 CCCTGTATTGCACTCCAGTGCCCTTATATTGAACTTCGGTGC
* * * *
26922249 CCCTGTATTGCATTCCGGTGCCCTTGA-ATTGTACTTTGGTGC
1 CCCTGTATTGCACTCCAGTGCCCTT-ATATTGAACTTCGGTGC
* * *
26922291 CTCTGTACTGCACTTCAGTGCCC
1 CCCTGTATTGCACTCCAGTGCCC
26922314 CTGTGTGTTT
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
41 5 0.06
42 84 0.93
43 1 0.01
ACGTcount: A:0.14, C:0.33, G:0.19, T:0.34
Consensus pattern (42 bp):
CCCTGTATTGCACTCCAGTGCCCTTATATTGAACTTCGGTGC
Found at i:26922891 original size:28 final size:28
Alignment explanation
Indices: 26922858--26922916 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
26922848 TTTGAAAGTT
*
26922858 AGAACAAATTGTGTAGGTTAAATATGTA
1 AGAACAAATTGTGTAGGTTAAATAGGTA
26922886 AGAACAAATTGTGTAGGTTAAATAGGTA
1 AGAACAAATTGTGTAGGTTAAATAGGTA
26922914 AGA
1 AGA
26922917 TAATTTTGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.44, C:0.03, G:0.24, T:0.29
Consensus pattern (28 bp):
AGAACAAATTGTGTAGGTTAAATAGGTA
Found at i:26924561 original size:124 final size:124
Alignment explanation
Indices: 26924341--26924590 Score: 500
Period size: 124 Copynumber: 2.0 Consensus size: 124
26924331 CATCAAGTAA
26924341 AGGAACAGGAAAGATCTTTTGTTGGTTGAAAAGAGCCAAAGAGGTATAAAAGTAACAGCAACCTA
1 AGGAACAGGAAAGATCTTTTGTTGGTTGAAAAGAGCCAAAGAGGTATAAAAGTAACAGCAACCTA
26924406 CACAAATCTGTCAACATCTTTACGTACAGTCCAAATATTAATAAACACAATGATTTGGT
66 CACAAATCTGTCAACATCTTTACGTACAGTCCAAATATTAATAAACACAATGATTTGGT
26924465 AGGAACAGGAAAGATCTTTTGTTGGTTGAAAAGAGCCAAAGAGGTATAAAAGTAACAGCAACCTA
1 AGGAACAGGAAAGATCTTTTGTTGGTTGAAAAGAGCCAAAGAGGTATAAAAGTAACAGCAACCTA
26924530 CACAAATCTGTCAACATCTTTACGTACAGTCCAAATATTAATAAACACAATGATTTGGT
66 CACAAATCTGTCAACATCTTTACGTACAGTCCAAATATTAATAAACACAATGATTTGGT
26924589 AG
1 AG
26924591 ATCTCCATTA
Statistics
Matches: 126, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
124 126 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (124 bp):
AGGAACAGGAAAGATCTTTTGTTGGTTGAAAAGAGCCAAAGAGGTATAAAAGTAACAGCAACCTA
CACAAATCTGTCAACATCTTTACGTACAGTCCAAATATTAATAAACACAATGATTTGGT
Found at i:26933821 original size:144 final size:145
Alignment explanation
Indices: 26933625--26933918 Score: 459
Period size: 144 Copynumber: 2.0 Consensus size: 145
26933615 ATTTTTAAGA
* *
26933625 TTTTGTTTATTTCTTGTAATTCAAAAAAAAAATATTAACATAAAAATACATTAATTTTTAAATTA
1 TTTTGTTTATTTCTTATAATTCAAAAAAAAAATATTAACATAAAAACACATTAATTTTTAAATTA
* * *
26933690 TTTAAGTTGATTGAATCTTAGCTCAATTAACATGAATATTGTTGCTATTACAGGAGGACATAAGT
66 TTTAAGTTGATTGAATCTTAGCTCAATTAACATGAATATTGTTGCTACTACAAGAAGACATAAGT
*
26933755 TTGAATACGTTTA-GG
131 TCGAATACG-TTAGGG
*
26933770 TTTTGTTCT-TTTCTTATAATTC-ACAAAAAAATATTAACATAAAAACACATTAATTTTTAAATT
1 TTTTGTT-TATTTCTTATAATTCAAAAAAAAAATATTAACATAAAAACACATTAATTTTTAAATT
* *
26933833 ATTTAAGTTGATTGAATCTTAGCTCAATTTATATGAATATTGTTGCTACTACAAGAAGACATAAG
65 ATTTAAGTTGATTGAATCTTAGCTCAATTAACATGAATATTGTTGCTACTACAAGAAGACATAAG
*
26933898 TTCGAGTACGTTAGGG
130 TTCGAATACGTTAGGG
26933914 TTTTG
1 TTTTG
26933919 CCACAAAAAT
Statistics
Matches: 137, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
143 3 0.02
144 114 0.83
145 19 0.14
146 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (145 bp):
TTTTGTTTATTTCTTATAATTCAAAAAAAAAATATTAACATAAAAACACATTAATTTTTAAATTA
TTTAAGTTGATTGAATCTTAGCTCAATTAACATGAATATTGTTGCTACTACAAGAAGACATAAGT
TCGAATACGTTAGGG
Found at i:26934388 original size:7 final size:7
Alignment explanation
Indices: 26934378--26934420 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
26934368 AAAAACATAA
26934378 AAATATT
1 AAATATT
26934385 AAATATT
1 AAATATT
26934392 AAATATT
1 AAATATT
*
26934399 AAAATAAT
1 -AAATATT
26934407 ATAATA-T
1 A-AATATT
26934414 AAATATT
1 AAATATT
26934421 TGTTTTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
6 4 0.12
7 18 0.56
8 10 0.31
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATATT
Found at i:26934402 original size:22 final size:22
Alignment explanation
Indices: 26934377--26934420 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26934367 AAAAAACATA
*
26934377 AAAATATTA-AATATTAAATATT
1 AAAATAATATAATA-TAAATATT
26934399 AAAATAATATAATATAAATATT
1 AAAATAATATAATATAAATATT
26934421 TGTTTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATAATATAATATAAATATT
Found at i:26936127 original size:14 final size:13
Alignment explanation
Indices: 26936095--26936132 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
26936085 TATTTAAACC
26936095 TAAAAAT-AAATA
1 TAAAAATAAAATA
*
26936107 TACAAATAAATATA
1 TAAAAATAAA-ATA
26936121 TAAAAATAAAAT
1 TAAAAATAAAAT
26936133 CATTAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (13 bp):
TAAAAATAAAATA
Found at i:26938246 original size:25 final size:25
Alignment explanation
Indices: 26938167--26938247 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
26938157 TAATAAAATA
26938167 TTTAAATATTTTTTTATAATTTATTT
1 TTTAAATA-TTTTTTATAATTTATTT
** * ** * *
26938193 TTT-AATATAAATATATAATAAAATA
1 TTTAAATAT-TTTTTATAATTTATTT
26938218 TTTAAATATTTTTTATAATTTATTT
1 TTTAAATATTTTTTATAATTTATTT
26938243 TTTAA
1 TTTAA
26938248 TATAAATAAC
Statistics
Matches: 39, Mismatches: 14, Indels: 5
0.67 0.24 0.09
Matches are distributed among these distances:
24 1 0.03
25 30 0.77
26 8 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (25 bp):
TTTAAATATTTTTTATAATTTATTT
Found at i:26938251 original size:50 final size:51
Alignment explanation
Indices: 26938152--26938255 Score: 201
Period size: 50 Copynumber: 2.1 Consensus size: 51
26938142 ATTAAAATGT
26938152 ATATATAATAAAATATTTAAATATTTTTTTATAATTTATTTTTTAATATAA
1 ATATATAATAAAATATTTAAATATTTTTTTATAATTTATTTTTTAATATAA
26938203 ATATATAATAAAATATTTAAATA-TTTTTTATAATTTATTTTTTAATATAA
1 ATATATAATAAAATATTTAAATATTTTTTTATAATTTATTTTTTAATATAA
26938253 ATA
1 ATA
26938256 ACATAATCCT
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 30 0.57
51 23 0.43
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (51 bp):
ATATATAATAAAATATTTAAATATTTTTTTATAATTTATTTTTTAATATAA
Found at i:26940512 original size:143 final size:143
Alignment explanation
Indices: 26940254--26940542 Score: 569
Period size: 143 Copynumber: 2.0 Consensus size: 143
26940244 TCTTGGCAAC
26940254 CAAAGGCGGAGGATATCAAGATTCCAGGAACCATTAGGAAGAACCAATTCGTTAAGAAGGCAATC
1 CAAAGGCGGAGGATATCAAGATTCCAGGAACCATTAGGAAGAACCAATTCGTTAAGAAGGCAATC
*
26940319 AGAATCTAATTTGGCCTGGGCCAGAATCAAATTAAACAAAGGTCCCGTCTCAAGTATGCTTTAAA
66 AGAATCTAATTTGGCCTGGGCCAGAATCAAATTAAACAAAAGTCCCGTCTCAAGTATGCTTTAAA
26940384 CTTTGATATTTAA
131 CTTTGATATTTAA
26940397 CAAAGGCGGAGGATATCAAGATTCCAGGAACCATTAGGAAGAACCAATTCGTTAAGAAGGCAATC
1 CAAAGGCGGAGGATATCAAGATTCCAGGAACCATTAGGAAGAACCAATTCGTTAAGAAGGCAATC
26940462 AGAATCTAATTTGGCCTGGGCCAGAATCAAATTAAACAAAAGTCCCGTCTCAAGTATGCTTTAAA
66 AGAATCTAATTTGGCCTGGGCCAGAATCAAATTAAACAAAAGTCCCGTCTCAAGTATGCTTTAAA
26940527 CTTTGATATTTAA
131 CTTTGATATTTAA
26940540 CAA
1 CAA
26940543 TGTATTATAA
Statistics
Matches: 145, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 145 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (143 bp):
CAAAGGCGGAGGATATCAAGATTCCAGGAACCATTAGGAAGAACCAATTCGTTAAGAAGGCAATC
AGAATCTAATTTGGCCTGGGCCAGAATCAAATTAAACAAAAGTCCCGTCTCAAGTATGCTTTAAA
CTTTGATATTTAA
Found at i:26950881 original size:10 final size:10
Alignment explanation
Indices: 26950866--26950894 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
26950856 CTCTTTGAAG
26950866 CACCAATCAT
1 CACCAATCAT
26950876 CACCAATCAT
1 CACCAATCAT
26950886 CACCAATCA
1 CACCAATCA
26950895 AAAACCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.17
Consensus pattern (10 bp):
CACCAATCAT
Found at i:26956128 original size:123 final size:122
Alignment explanation
Indices: 26955912--26956134 Score: 295
Period size: 123 Copynumber: 1.8 Consensus size: 122
26955902 CGCTACATTG
* *
26955912 TTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCAATTCGTTATCTGACCCTCTTCTCTG
1 TTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCAATTCGTTATCTGACCCACTTCTCTG
** *
26955977 TATCTCATTAGGAAGATGAGGTTTGAAGTTTCACTTTCATTTGAGCTTTACCTCAATA
66 TATCTCACCAGGAAGATGA-GTTCGAAGTTTCACTTTCATTTGAGCTTTACCTCAATA
* * * * * * * *
26956035 TTTTGGTTCATTTCTTTGTATCTCATCAGGAATATGACCACTTTGTTGTTTGACCCACTTCTCTG
1 TTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCAATTCGTTATCTGACCCACTTCTCTG
26956100 TATCTCACCAGGAAGACCTGA-TTCGAAGTTTCACT
66 TATCTCACCAGGAAGA--TGAGTTCGAAGTTTCACT
26956135 CCACTCCACT
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
123 82 0.96
125 3 0.04
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (122 bp):
TTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCAATTCGTTATCTGACCCACTTCTCTG
TATCTCACCAGGAAGATGAGTTCGAAGTTTCACTTTCATTTGAGCTTTACCTCAATA
Found at i:26956352 original size:220 final size:221
Alignment explanation
Indices: 26955969--26956384 Score: 593
Period size: 220 Copynumber: 1.9 Consensus size: 221
26955959 ATCTGACCCT
* ** * ** *
26955969 CTTCTCTGTATCTCATTAGGAAGATGAGGTTTGAAGTTTCACTTTCATTTGAGCTTTACCTCAAT
1 CTTCTCTGTACCTCACCAGAAAGATGAGGTTTGAAGTTTCACTCGCATTTGAGCTTCACCTCAAT
* * * * *
26956034 ATTTTGGTTCATTTCTTTGTATCTCATCAGGAATATGACCACTTTGTTGTTTGACCCACTTCTCT
66 ATTTTAGTCCACTTCTCTGTATCTCATCAGGAAGATGACCACTTTGTTGTTTGACCCACTTCTCT
* *
26956099 GTATCTCACCAGGAAGACCTGATTCGAAGTTTCACTCCACTCCACTGTATCCTCAAGGACATTGA
131 GTACCTCACCAGGAAGACCGGATTCGAAGTTTCACTCCACTCCACTGTATCCTCAAGGACATTGA
26956164 GCTCTGCTTCACACTATTCGCATCCA
196 GCTCTGCTTCACACTATTCGCATCCA
*
26956190 CTTCTCTGTACCTCACCAGAAAGATG-GGATTTGAAGTTTCACTCGCA-TTGAGCTTCACCTCAT
1 CTTCTCTGTACCTCACCAGAAAGATGAGG-TTTGAAGTTTCACTCGCATTTGAGCTTCACCTCAA
* ***
26956253 TGTTTTAGTCCACTTCTCTGTATCTCATCAGGAAGATGATTGCTTTGTTGTTTGACCCACTTCTC
65 TATTTTAGTCCACTTCTCTGTATCTCATCAGGAAGATGACCACTTTGTTGTTTGACCCACTTCTC
** * * *
26956318 TGTACCTCACCAGGAAGATGGGATTTGAAGTTTCACTCCACTCCACTGTATTCTCAGGGACATTG
130 TGTACCTCACCAGGAAGACCGGATTCGAAGTTTCACTCCACTCCACTGTATCCTCAAGGACATTG
26956383 AG
195 AG
26956385 GTCAACTTCA
Statistics
Matches: 170, Mismatches: 24, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
220 132 0.78
221 38 0.22
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (221 bp):
CTTCTCTGTACCTCACCAGAAAGATGAGGTTTGAAGTTTCACTCGCATTTGAGCTTCACCTCAAT
ATTTTAGTCCACTTCTCTGTATCTCATCAGGAAGATGACCACTTTGTTGTTTGACCCACTTCTCT
GTACCTCACCAGGAAGACCGGATTCGAAGTTTCACTCCACTCCACTGTATCCTCAAGGACATTGA
GCTCTGCTTCACACTATTCGCATCCA
Found at i:26969066 original size:14 final size:14
Alignment explanation
Indices: 26969031--26969078 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
26969021 AGTCATTTAT
26969031 AAAAAAA-AAGAG-
1 AAAAAAAGAAGAGA
*
26969043 AAAGAAAGAAGAGA
1 AAAAAAAGAAGAGA
*
26969057 AAAAAAAGAAAAGA
1 AAAAAAAGAAGAGA
26969071 AGAAAAAA
1 A-AAAAAA
26969079 AGAAATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
12 6 0.20
13 5 0.17
14 13 0.43
15 6 0.20
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAGAGA
Found at i:26969066 original size:18 final size:18
Alignment explanation
Indices: 26969043--26969079 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26969033 AAAAAAAGAG
26969043 AAAG-AAAGAAGAGAAAAA
1 AAAGAAAAGAAGA-AAAAA
26969061 AAAGAAAAGAAGAAAAAA
1 AAAGAAAAGAAGAAAAAA
26969079 A
1 A
26969080 GAAATATATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (18 bp):
AAAGAAAAGAAGAAAAAA
Found at i:26969071 original size:27 final size:24
Alignment explanation
Indices: 26969032--26969083 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 24
26969022 GTCATTTATA
* *
26969032 AAAAAAAAGAGAAAGAAAGAAGAGAA
1 AAAAAAAAAAG-AAGAAA-AAAAGAA
26969058 AAAAAAGAAAAGAAGAAAAAAAGAA
1 AAAAAA-AAAAGAAGAAAAAAAGAA
26969083 A
1 A
26969084 TATATGCTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 7 0.30
26 12 0.52
27 4 0.17
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (24 bp):
AAAAAAAAAAGAAGAAAAAAAGAA
Found at i:26976013 original size:51 final size:51
Alignment explanation
Indices: 26975931--26976169 Score: 342
Period size: 51 Copynumber: 4.7 Consensus size: 51
26975921 GCTATAAATG
*
26975931 AAAGAGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGTATT
1 AAAG-GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* *
26975983 AAAGGTCCGTTGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* *
26976034 AAAGGTCTGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * *
26976085 AAAGGTTCGATGACT-A---TCATCGTGAGTAAATGAATCCATGACGAATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* *
26976132 AAAGGTCCGATGACTCAGTGTCATCGTGAGTATATGAA
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAA
26976170 CTTCTATACG
Statistics
Matches: 170, Mismatches: 13, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
47 41 0.24
48 1 0.01
50 1 0.01
51 123 0.72
52 4 0.02
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
Found at i:26976823 original size:21 final size:24
Alignment explanation
Indices: 26976798--26976854 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 24
26976788 GACTTGAGTT
26976798 GTATCGGTAGTTAAAT-TAT-G-A
1 GTATCGGTAGTTAAATGTATAGAA
**
26976819 GTATCGGTAGTTGTATGTATAGAA
1 GTATCGGTAGTTAAATGTATAGAA
26976843 GTATCGGTAGTT
1 GTATCGGTAGTT
26976855 TGCATGCTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 14 0.45
22 3 0.10
23 1 0.03
24 13 0.42
ACGTcount: A:0.28, C:0.05, G:0.28, T:0.39
Consensus pattern (24 bp):
GTATCGGTAGTTAAATGTATAGAA
Found at i:26982629 original size:51 final size:51
Alignment explanation
Indices: 26982547--26982783 Score: 384
Period size: 51 Copynumber: 4.6 Consensus size: 51
26982537 GCTATAAACG
*
26982547 AAAGAGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTATGGATT
1 AAAG-GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* *
26982599 AAAGGTCCGGTGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
*
26982650 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTATGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * *
26982701 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCGTGACGAATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* *
26982752 AAAGGTTCGATGACTTAGTGTCATCGTGAGTA
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTA
26982784 TATAAACTTC
Statistics
Matches: 173, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
51 169 0.98
52 4 0.02
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
Found at i:27005346 original size:15 final size:15
Alignment explanation
Indices: 27005327--27005368 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 15
27005317 TTAAAAATTA
27005327 ATTAATTAAGTTAAAG
1 ATTAATT-AGTTAAAG
27005343 -TTAAATTAGTT-AAG
1 ATT-AATTAGTTAAAG
27005357 ATTAATTAGTTA
1 ATTAATTAGTTA
27005369 TATGTATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
14 11 0.48
15 8 0.35
16 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (15 bp):
ATTAATTAGTTAAAG
Found at i:27010174 original size:17 final size:17
Alignment explanation
Indices: 27010152--27010185 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
27010142 AAATAAAGTA
27010152 AAACCAAGTCTTTTTGT
1 AAACCAAGTCTTTTTGT
27010169 AAACCAAGTCTTTTTGT
1 AAACCAAGTCTTTTTGT
27010186 CCTATAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (17 bp):
AAACCAAGTCTTTTTGT
Found at i:27010914 original size:103 final size:103
Alignment explanation
Indices: 27010727--27010914 Score: 227
Period size: 103 Copynumber: 1.8 Consensus size: 103
27010717 ATACATTGGA
* * * **
27010727 CCTTTTGACGCGAAATGAAATGACACCCAAGCACTCCATCCCAGTTACTCAGCCCAACATGCTCT
1 CCTTTTGACGCGAAATGAAATGACAACCAAACACTCCACCCCAGTTACTCAGCCCAACACACTCT
* * *
27010792 CAATTTTTTCTCTTTTTTCTGTTTAGAATGTGTTAGTC
66 CAATTATTTATCTTATTTCTGTTTAGAATGTGTTAGTC
* * * * *
27010830 CCTTTTGACGCGAAGTGAAATGACAACCAAACACTCCACCCCGGTTACTTAGTCTAACACACTC-
1 CCTTTTGACGCGAAATGAAATGACAACCAAACACTCCACCCCAGTTACTCAGCCCAACACACTCT
27010894 CAAATATATTTAT-TTATTTCT
66 C-AAT-TATTTATCTTATTTCT
27010915 TTTTTTTTCG
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
102 1 0.01
103 64 0.91
104 5 0.07
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (103 bp):
CCTTTTGACGCGAAATGAAATGACAACCAAACACTCCACCCCAGTTACTCAGCCCAACACACTCT
CAATTATTTATCTTATTTCTGTTTAGAATGTGTTAGTC
Found at i:27016741 original size:29 final size:30
Alignment explanation
Indices: 27016698--27016757 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
27016688 ATATTGGTCA
* *
27016698 CAAAATTTAATTAAAGCTC-AATTTAGTCC
1 CAAAATTTAACTAAAACTCTAATTTAGTCC
* *
27016727 CAAAATTTCACTAAAATTCTAATTTAGTCC
1 CAAAATTTAACTAAAACTCTAATTTAGTCC
27016757 C
1 C
27016758 TAATTCAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.35
Consensus pattern (30 bp):
CAAAATTTAACTAAAACTCTAATTTAGTCC
Found at i:27020355 original size:14 final size:14
Alignment explanation
Indices: 27020322--27020362 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
27020312 CAGGGACGAT
27020322 CCTTTCTTCTTTCC
1 CCTTTCTTCTTTCC
** *
27020336 AGTTTCTCCTTTCC
1 CCTTTCTTCTTTCC
27020350 CCTTTCTTCTTTC
1 CCTTTCTTCTTTC
27020363 GGTAAGCATT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.02, C:0.39, G:0.02, T:0.56
Consensus pattern (14 bp):
CCTTTCTTCTTTCC
Found at i:27027889 original size:17 final size:17
Alignment explanation
Indices: 27027867--27027901 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
27027857 GTCGATTTCA
* *
27027867 GGTCAACGGTTCGGGTC
1 GGTCAACAGTTCAGGTC
27027884 GGTCAACAGTTCAGGTC
1 GGTCAACAGTTCAGGTC
27027901 G
1 G
27027902 AGTTTGGGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.17, C:0.23, G:0.37, T:0.23
Consensus pattern (17 bp):
GGTCAACAGTTCAGGTC
Found at i:27028284 original size:54 final size:54
Alignment explanation
Indices: 27028202--27028338 Score: 220
Period size: 54 Copynumber: 2.5 Consensus size: 54
27028192 GGTCCCAACC
* **
27028202 GCTTACGAGTCAACGGGAACTTAACGGTGAGGGAAGATTGGAGGCTTGGGGTTT
1 GCTTACGAGTCGACGGGAACTTAACGGTGAGGGAAGATTGGAGGCTTCAGGTTT
*
27028256 GCTTACTAGTCGACGGGAACTTAACGGTGAGGGAAGATTGGAGGCTTCAGGTTT
1 GCTTACGAGTCGACGGGAACTTAACGGTGAGGGAAGATTGGAGGCTTCAGGTTT
**
27028310 GCTTACGAGTCGACGAAAACTTAACGGTG
1 GCTTACGAGTCGACGGGAACTTAACGGTG
27028339 GTGACGGTAC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.26, C:0.15, G:0.35, T:0.24
Consensus pattern (54 bp):
GCTTACGAGTCGACGGGAACTTAACGGTGAGGGAAGATTGGAGGCTTCAGGTTT
Found at i:27032852 original size:82 final size:82
Alignment explanation
Indices: 27032621--27032842 Score: 327
Period size: 82 Copynumber: 2.7 Consensus size: 82
27032611 AACCAGTATA
** * * **
27032621 CGATGCTGCTCACACAAGCTGATGAGAATTCGCGACATACGTGAAGACTCAGCTATCGATATTGT
1 CGATGCTGCTCACACAAGCTGATGAGAATTCGTAACATACGCGAAGACTCAGCCATCGATACGGT
*
27032686 CCAGAATTTCTCACTCT
66 CCAAAATTTCTCACTCT
* * *
27032703 CGATGCTGCTCACACAAGCTGATGAGAATTTGTAACATATGCAAAGACTCAGCCATCGATACGGT
1 CGATGCTGCTCACACAAGCTGATGAGAATTCGTAACATACGCGAAGACTCAGCCATCGATACGGT
27032768 CCAAAATTTCTCACTCT
66 CCAAAATTTCTCACTCT
* * *
27032785 CGATGCTACTCACACAAGCTAATGAAAATTCGTAACATACGCGAAGACTCAGCCATCG
1 CGATGCTGCTCACACAAGCTGATGAGAATTCGTAACATACGCGAAGACTCAGCCATCG
27032843 GAGGGGTCCA
Statistics
Matches: 124, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 124 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (82 bp):
CGATGCTGCTCACACAAGCTGATGAGAATTCGTAACATACGCGAAGACTCAGCCATCGATACGGT
CCAAAATTTCTCACTCT
Found at i:27043724 original size:19 final size:18
Alignment explanation
Indices: 27043700--27043737 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
27043690 ACCAACCGAC
27043700 CAAGATGAAATTGTCGATG
1 CAAGATGAAATTGTC-ATG
*
27043719 CAAGATGATATTGTCATG
1 CAAGATGAAATTGTCATG
27043737 C
1 C
27043738 CATCTCTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (18 bp):
CAAGATGAAATTGTCATG
Found at i:27051509 original size:13 final size:14
Alignment explanation
Indices: 27051480--27051509 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
27051470 TTCAATACAT
27051480 TGACATTTAACCTC
1 TGACATTTAACCTC
27051494 TGACATTTAA-CTC
1 TGACATTTAACCTC
27051507 TGA
1 TGA
27051510 TTGCATTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:27054913 original size:19 final size:19
Alignment explanation
Indices: 27054889--27054936 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
27054879 TGGGTCGATC
27054889 AATGGGTCGGGTCACAAGT
1 AATGGGTCGGGTCACAAGT
*
27054908 AATGGGTTCGGGTCACAGGT
1 AATGGG-TCGGGTCACAAGT
*
27054928 ATTGGGTCG
1 AATGGGTCG
27054937 ATCAAATGGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.21, C:0.15, G:0.40, T:0.25
Consensus pattern (19 bp):
AATGGGTCGGGTCACAAGT
Found at i:27056337 original size:39 final size:39
Alignment explanation
Indices: 27056294--27056368 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
27056284 GTGTATATGG
* *
27056294 GAGATTTAATTATAATATGGGTTTATAGTAATTTTGGTT
1 GAGATTTAATTATAATATGAGTTTATAGTAAGTTTGGTT
*
27056333 GAGATTTAATTATGATATGAGTTTATAGTAAGTTTG
1 GAGATTTAATTATAATATGAGTTTATAGTAAGTTTG
27056369 ATTTGATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (39 bp):
GAGATTTAATTATAATATGAGTTTATAGTAAGTTTGGTT
Found at i:27058030 original size:21 final size:21
Alignment explanation
Indices: 27058006--27058045 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
27057996 ACCATTAATT
*
27058006 TATTTATTT-ATTTATTTTTGG
1 TATTT-TTTAATTAATTTTTGG
27058027 TATTTTTTAATTAATTTTT
1 TATTTTTTAATTAATTTTT
27058046 ATCACTAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (21 bp):
TATTTTTTAATTAATTTTTGG
Found at i:27058326 original size:22 final size:23
Alignment explanation
Indices: 27058281--27058328 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
27058271 ATTCTACTTT
*
27058281 AAATATAATTTAAGTGATTAAAA
1 AAATATAATTTAAATGATTAAAA
27058304 AAATATAA-TTAAATGAATTAAAA
1 AAATATAATTTAAATG-ATTAAAA
27058327 AA
1 AA
27058329 GAGTTTGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (23 bp):
AAATATAATTTAAATGATTAAAA
Found at i:27059141 original size:3 final size:3
Alignment explanation
Indices: 27059133--27059164 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
27059123 CCTTTTCCAA
27059133 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
27059165 AGTAAAGGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:27059653 original size:16 final size:17
Alignment explanation
Indices: 27059622--27059653 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
27059612 AATAAAATTT
27059622 TATTTTAAGAGAGATCC
1 TATTTTAAGAGAGATCC
27059639 TATTTTAAG-GAGATC
1 TATTTTAAGAGAGATC
27059654 GAGACTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (17 bp):
TATTTTAAGAGAGATCC
Found at i:27063496 original size:13 final size:12
Alignment explanation
Indices: 27063447--27063497 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
27063437 ATATTAAACA
*
27063447 AACATGTTTATG
1 AACATGTTAATG
*
27063459 AACAT-ATAATTG
1 AACATGTTAA-TG
*
27063471 AACATGTTCATG
1 AACATGTTAATG
27063483 AACAATGTTAATG
1 AAC-ATGTTAATG
27063496 AA
1 AA
27063498 TAATAAACAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
11 2 0.06
12 17 0.55
13 12 0.39
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (12 bp):
AACATGTTAATG
Found at i:27065398 original size:21 final size:19
Alignment explanation
Indices: 27065362--27065401 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
27065352 ATCCTGAATC
*
27065362 TAAAATCTCAAACCCTAAA
1 TAAAATATCAAACCCTAAA
27065381 TAAAATATCTAAATCCCTAAA
1 TAAAATATC-AAA-CCCTAAA
27065402 CACCAACCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 3 0.17
21 7 0.39
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.25
Consensus pattern (19 bp):
TAAAATATCAAACCCTAAA
Found at i:27082047 original size:23 final size:22
Alignment explanation
Indices: 27082016--27082059 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
27082006 AAAGAAATAG
*
27082016 AATTAACCCAATTTAATTAATT
1 AATTAACCCAAATTAATTAATT
*
27082038 AATTCAACCCAAATTATTTAAT
1 AATT-AACCCAAATTAATTAAT
27082060 AAAATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTAACCCAAATTAATTAATT
Found at i:27091647 original size:18 final size:18
Alignment explanation
Indices: 27091624--27091668 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
27091614 TAAAAAAACC
*
27091624 ATTGTTTAAGAGGAAG-CT
1 ATTGTTCAAG-GGAAGACT
*
27091642 ATTGTTCAAGGGGAGACT
1 ATTGTTCAAGGGAAGACT
27091660 ATTGTTCAA
1 ATTGTTCAA
27091669 AATGCTAGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.31, C:0.09, G:0.27, T:0.33
Consensus pattern (18 bp):
ATTGTTCAAGGGAAGACT
Found at i:27123523 original size:57 final size:58
Alignment explanation
Indices: 27123426--27123546 Score: 140
Period size: 57 Copynumber: 2.1 Consensus size: 58
27123416 ATTGCATGGT
*
27123426 GAAATGGAGAAATAGGAAACATTTGGAAATGATTAAGG-TTTTCCCTAAAATGAAAATGA
1 GAAATGGAGAAATA-GAAACATTTGGAAATGAATAAGGTTTTTCCC-AAAATGAAAATGA
* * ** *
27123485 -AAATGGAGAAAT-GAAATCTTTTGTAAATGAATGTGGTTTTTTCCAAAATGAAAATGA
1 GAAATGGAGAAATAGAAA-CATTTGGAAATGAATAAGGTTTTTCCCAAAATGAAAATGA
27123542 GAAAT
1 GAAAT
27123547 AAATTCATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
56 4 0.08
57 27 0.51
58 22 0.42
ACGTcount: A:0.45, C:0.06, G:0.21, T:0.29
Consensus pattern (58 bp):
GAAATGGAGAAATAGAAACATTTGGAAATGAATAAGGTTTTTCCCAAAATGAAAATGA
Found at i:27132837 original size:22 final size:21
Alignment explanation
Indices: 27132783--27132837 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
27132773 GGAAAAGTGG
*
27132783 GAAAAAGTAAAAGTTTTGGGC
1 GAAAAAGTAAAAGATTTGGGC
27132804 G-AAAAGTAAAAAGATTTGGG-
1 GAAAAAGT-AAAAGATTTGGGC
27132824 GTAAAAATGTAAAA
1 G-AAAAA-GTAAAA
27132838 TATTATAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 7 0.24
21 12 0.41
22 8 0.28
23 2 0.07
ACGTcount: A:0.51, C:0.02, G:0.25, T:0.22
Consensus pattern (21 bp):
GAAAAAGTAAAAGATTTGGGC
Found at i:27133675 original size:11 final size:10
Alignment explanation
Indices: 27133658--27133691 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
27133648 AAATAGACAC
27133658 TTTTTCTTTT
1 TTTTTCTTTT
27133668 TCTTTTCTTTT
1 T-TTTTCTTTT
27133679 TTTTGTCTTTT
1 TTTT-TCTTTT
27133690 TT
1 TT
27133692 AAAGATTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 4 0.18
11 18 0.82
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:27133687 original size:16 final size:17
Alignment explanation
Indices: 27133657--27133689 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
27133647 CAAATAGACA
*
27133657 CTTTTTCTTTTTCTTTT
1 CTTTTTCTTTGTCTTTT
27133674 CTTTTT-TTTGTCTTTT
1 CTTTTTCTTTGTCTTTT
27133690 TTAAAGATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (17 bp):
CTTTTTCTTTGTCTTTT
Found at i:27137434 original size:20 final size:20
Alignment explanation
Indices: 27137384--27137440 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
27137374 TACTTTAGCC
**
27137384 ATTTTT-TATTTTTGTTTTA
1 ATTTTTCTATTTTTAATTTA
*
27137403 ATATTTGC-ATTTTTAATTTA
1 AT-TTTTCTATTTTTAATTTA
27137423 ATTTTTCTA-TTTTAATTT
1 ATTTTTCTATTTTTAATTT
27137441 TTCCCTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.70
Consensus pattern (20 bp):
ATTTTTCTATTTTTAATTTA
Found at i:27141208 original size:18 final size:18
Alignment explanation
Indices: 27141156--27141209 Score: 54
Period size: 21 Copynumber: 2.8 Consensus size: 18
27141146 TTTGTTTCTT
*
27141156 TTATTATTTATTTAATTA
1 TTATTATTTATTTTATTA
* *
27141174 TTTTTATTATCCCTTTTATTA
1 TTATTATT-T--ATTTTATTA
27141195 TTATTATTTATTTTA
1 TTATTATTTATTTTA
27141210 ATTGTTTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
18 12 0.43
19 1 0.04
20 1 0.04
21 14 0.50
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (18 bp):
TTATTATTTATTTTATTA
Found at i:27141219 original size:21 final size:20
Alignment explanation
Indices: 27141154--27141220 Score: 50
Period size: 21 Copynumber: 3.4 Consensus size: 20
27141144 TTTTTGTTTC
27141154 TTTTATTATTTA-TTTAATTAT
1 TTTTATTATTTATTTTAA-T-T
***
27141175 TTTTATTATCCCTTTT-A-T
1 TTTTATTATTTATTTTAATT
*
27141193 TATTATTATTTATTTTAATT
1 TTTTATTATTTATTTTAATT
27141213 GTTTTATT
1 -TTTTATT
27141221 TGTTACTATT
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
18 13 0.38
19 1 0.03
20 1 0.03
21 16 0.47
22 3 0.09
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.70
Consensus pattern (20 bp):
TTTTATTATTTATTTTAATT
Found at i:27143512 original size:15 final size:15
Alignment explanation
Indices: 27143492--27143543 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
27143482 TTTTTTTTCA
27143492 AAAAAAATCAAAAAG
1 AAAAAAATCAAAAAG
*
27143507 AAAAAAATTCCAAAA-
1 AAAAAAA-TCAAAAAG
**
27143522 AAAAAAAGAAAAAAG
1 AAAAAAATCAAAAAG
27143537 AAAAAAA
1 AAAAAAA
27143544 ATGTGTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 4 0.13
15 21 0.68
16 6 0.19
ACGTcount: A:0.83, C:0.06, G:0.06, T:0.06
Consensus pattern (15 bp):
AAAAAAATCAAAAAG
Found at i:27145785 original size:45 final size:44
Alignment explanation
Indices: 27145736--27145946 Score: 228
Period size: 45 Copynumber: 4.7 Consensus size: 44
27145726 TTACGAAACT
* * * *
27145736 AGAAAGACCATGGTTGAAAGATACCATGGCATTATACCTGAAACG
1 AGAAAGACCATAGTTGAAAGATACTATGGCATT-TACCGGAAATG
27145781 AGAAAGACCATAGTTGAAAGATACTATGGCATTTAACCGG-AATG
1 AGAAAGACCATAGTTGAAAGATACTATGGCATTT-ACCGGAAATG
* * *
27145825 A-ATAAGACCATAGTTGAAAGATACTATGACACTTTATCGGAATTG
1 AGA-AAGACCATAGTTGAAAGATACTATGGCA-TTTACCGGAAATG
* ** * *
27145870 AGTAAGACCATAGTTGAAACTTACTATGGCATTATATCGGCAATG
1 AGAAAGACCATAGTTGAAAGATACTATGGCATT-TACCGGAAATG
** *
27145915 ATCAAGACCATAGTTGAAAGATCCTATGGCAT
1 AGAAAGACCATAGTTGAAAGATACTATGGCAT
27145947 CACTTCGGGA
Statistics
Matches: 142, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
43 1 0.01
44 38 0.27
45 103 0.73
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (44 bp):
AGAAAGACCATAGTTGAAAGATACTATGGCATTTACCGGAAATG
Found at i:27145895 original size:89 final size:90
Alignment explanation
Indices: 27145739--27145942 Score: 245
Period size: 89 Copynumber: 2.3 Consensus size: 90
27145729 CGAAACTAGA
* * * * *
27145739 AAGACCATGGTTGAAAGATACCATGGCATTATACCTGAAACGAGAAAGACCATAGTTGAAAGATA
1 AAGACCATAGTTGAAAGATACTATGACATTATACCGGAAACGAGAAAGACCATAGTTGAAACATA
27145804 CTATGGCATT-TAACCGG-AATGAAT-
66 CTATGGCATTAT-ACCGGCAATG-ATC
* ** * *
27145828 AAGACCATAGTTGAAAGATACTATGACACTT-TATCGGAATTGAGTAAGACCATAGTTGAAACTT
1 AAGACCATAGTTGAAAGATACTATGACA-TTATACCGGAAACGAGAAAGACCATAGTTGAAACAT
*
27145892 ACTATGGCATTATATCGGCAATGATC
65 ACTATGGCATTATACCGGCAATGATC
*
27145918 AAGACCATAGTTGAAAGATCCTATG
1 AAGACCATAGTTGAAAGATACTATG
27145943 GCATCACTTC
Statistics
Matches: 99, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
89 68 0.69
90 31 0.31
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (90 bp):
AAGACCATAGTTGAAAGATACTATGACATTATACCGGAAACGAGAAAGACCATAGTTGAAACATA
CTATGGCATTATACCGGCAATGATC
Found at i:27145976 original size:90 final size:89
Alignment explanation
Indices: 27145787--27145991 Score: 213
Period size: 90 Copynumber: 2.3 Consensus size: 89
27145777 AACGAGAAAG
*
27145787 ACCATAGTTGAAAGATACTATGGCATTTAACCGGAATGAATAAGACCATAGTTGAAAGATACTAT
1 ACCATAGTTGAAACATACTATGGCATTTAACCGGAATGAATAAGACCATAGTTGAAAGATACTAT
** *
27145852 GACACTTTATCGGAATTGAGTAAG
66 GACACACTATCGGAATTGAGTAAA
* * *
27145876 ACCATAGTTGAAACTTACTATGGCA-TTATATCGGCAATG-ATCAAGACCATAGTTGAAAGATCC
1 ACCATAGTTGAAACATACTATGGCATTTA-ACCGG-AATGAAT-AAGACCATAGTTGAAAGATAC
*
27145939 TATGGCATCACT-TCGGGAA-TGTA-TAAA
63 TATGACA-CACTATC-GGAATTG-AGTAAA
* * * *
27145966 ATCATGGTTGAAAGATACCATGGCAT
1 ACCATAGTTGAAACATACTATGGCAT
27145992 CCTATGATTT
Statistics
Matches: 96, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
88 3 0.03
89 29 0.30
90 57 0.59
91 7 0.07
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (89 bp):
ACCATAGTTGAAACATACTATGGCATTTAACCGGAATGAATAAGACCATAGTTGAAAGATACTAT
GACACACTATCGGAATTGAGTAAA
Found at i:27158718 original size:23 final size:23
Alignment explanation
Indices: 27158687--27159017 Score: 423
Period size: 23 Copynumber: 14.4 Consensus size: 23
27158677 TTCTTATATC
27158687 TGTGCTTAAATATTAATATGATT
1 TGTGCTTAAATATTAATATGATT
* * *
27158710 TATGATTAAATATTAATGTGATT
1 TGTGCTTAAATATTAATATGATT
* **
27158733 TGTGCTTAAGTATTAACGTGATT
1 TGTGCTTAAATATTAATATGATT
* *
27158756 TATACTTAAATATTAATATGATT
1 TGTGCTTAAATATTAATATGATT
*
27158779 TGTGCATAAATATTAATATGATT
1 TGTGCTTAAATATTAATATGATT
27158802 TGTGCTTAAATATTAATATGATT
1 TGTGCTTAAATATTAATATGATT
* *
27158825 TATGCTTAAATATTAATGTGATT
1 TGTGCTTAAATATTAATATGATT
27158848 TGTGCTTAAATATTAATATGATT
1 TGTGCTTAAATATTAATATGATT
* **
27158871 TGTGCTAAAATATTAACGTGATT
1 TGTGCTTAAATATTAATATGATT
*
27158894 TGTGCTTAAATATGAATATGATT
1 TGTGCTTAAATATTAATATGATT
* *
27158917 TGTGCTCAAATATTAATGTGATT
1 TGTGCTTAAATATTAATATGATT
* * *
27158940 TATGCTTAAACATTAAT-GGTATT
1 TGTGCTTAAATATTAATATG-ATT
*
27158963 TGTGCTT-AATATTAGTATGATT
1 TGTGCTTAAATATTAATATGATT
* * *
27158985 TATGATTAAATATTAATGTGATT
1 TGTGCTTAAATATTAATATGATT
27159008 TGTGCTTAAA
1 TGTGCTTAAA
27159018 GAATTAAGAT
Statistics
Matches: 261, Mismatches: 44, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
22 16 0.06
23 245 0.94
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.46
Consensus pattern (23 bp):
TGTGCTTAAATATTAATATGATT
Found at i:27159127 original size:36 final size:36
Alignment explanation
Indices: 27159087--27159163 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
27159077 TGATAACTGT
** * *
27159087 TGTGAAAGTCAATATGTAGGCATGTTCTTCATGCCA
1 TGTGAAAGAAAATATATAGGCATATTCTTCATGCCA
* * *
27159123 TGTGACAGAAAATATATGGGTATATTCTTCATGCCA
1 TGTGAAAGAAAATATATAGGCATATTCTTCATGCCA
27159159 TGTGA
1 TGTGA
27159164 CTGATTATAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (36 bp):
TGTGAAAGAAAATATATAGGCATATTCTTCATGCCA
Found at i:27161411 original size:38 final size:37
Alignment explanation
Indices: 27161368--27161453 Score: 104
Period size: 38 Copynumber: 2.3 Consensus size: 37
27161358 TAAAAAGTAT
*
27161368 TTATATTAAAAAATATC-AGAAATATAATAA-ATATTTTA
1 TTATATTAAAAAACA-CAAGAAATATAATAACA-A-TTTA
*
27161406 TTATATTAAAAAACACAAATAAATATAATAACAATTTA
1 TTATATTAAAAAACAC-AAGAAATATAATAACAATTTA
27161444 TTATATTAAA
1 TTATATTAAA
27161454 TATAATTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
37 1 0.02
38 28 0.65
39 13 0.30
40 1 0.02
ACGTcount: A:0.57, C:0.05, G:0.01, T:0.37
Consensus pattern (37 bp):
TTATATTAAAAAACACAAGAAATATAATAACAATTTA
Found at i:27167501 original size:18 final size:16
Alignment explanation
Indices: 27167467--27167509 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
27167457 CTAAAAATTT
27167467 AAATAAATATATAAAA
1 AAATAAATATATAAAA
* *
27167483 ATACATAAATATGTTAAA
1 A-A-ATAAATATATAAAA
27167501 AAATAAATA
1 AAATAAATA
27167510 AATTTAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 8 0.35
17 2 0.09
18 13 0.57
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (16 bp):
AAATAAATATATAAAA
Found at i:27167737 original size:49 final size:49
Alignment explanation
Indices: 27167675--27167793 Score: 177
Period size: 49 Copynumber: 2.4 Consensus size: 49
27167665 CTATTAGAAA
27167675 TATAATATTTAAATTTA-TAATTATAAATTTTGAAAATATTTATGTATTTT
1 TATAAT-TTTAAATTTATTAA-TATAAATTTTGAAAATATTTATGTATTTT
* **
27167725 TATATTTTTAAATTTATTAATATATTTTTTGAAAATATTTATGTATTTT
1 TATAATTTTAAATTTATTAATATAAATTTTGAAAATATTTATGTATTTT
*
27167774 TATAATTTTAAATTTTTTAA
1 TATAATTTTAAATTTATTAA
27167794 GAATTGATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
49 55 0.87
50 8 0.13
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (49 bp):
TATAATTTTAAATTTATTAATATAAATTTTGAAAATATTTATGTATTTT
Found at i:27171958 original size:69 final size:66
Alignment explanation
Indices: 27171869--27172005 Score: 186
Period size: 69 Copynumber: 2.0 Consensus size: 66
27171859 CTCTCTATTA
*
27171869 TTAGCACTGTGTGTGCTCTCTGATT-AGCACTTTGTGTGCTCTCTGATTAGTACTTTGTGTACTC
1 TTAGCACTGTGTGTGCTCTCT-ATTCAGCAC-TTATGTGCTCTCTG-TTAGTACTTTG-GTACTC
27171933 TCTAG
62 TCTAG
*
27171938 TTAGCACTGTGTGTGCTCTCTATTGCCAAGCACTTATGTGCTCTCTGTTAGTACTTTGGTACTTT
1 TTAGCACTGTGTGTGCTCTCTATT--C-AGCACTTATGTGCTCTCTGTTAGTACTTTGGTACTCT
27172003 CTA
63 CTA
27172006 TTTGTTCCGT
Statistics
Matches: 62, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
68 3 0.05
69 30 0.48
70 11 0.18
71 13 0.21
72 5 0.08
ACGTcount: A:0.15, C:0.21, G:0.20, T:0.43
Consensus pattern (66 bp):
TTAGCACTGTGTGTGCTCTCTATTCAGCACTTATGTGCTCTCTGTTAGTACTTTGGTACTCTCTA
G
Found at i:27171959 original size:23 final size:23
Alignment explanation
Indices: 27171835--27171958 Score: 135
Period size: 23 Copynumber: 5.3 Consensus size: 23
27171825 ACACTAGCGC
* *
27171835 GCTCTCTGTTTAGCA-TGTCTCGT
1 GCTCTCTGATTAGCACTGTGT-GT
*
27171858 GCTCTCTATTATTAGCACTGTGTGT
1 GCTCTC--TGATTAGCACTGTGTGT
*
27171883 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* *
27171906 GCTCTCTGATTAGTACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
*
27171929 ACTCTCT-AGTTAGCACTGTGTGT
1 GCTCTCTGA-TTAGCACTGTGTGT
27171952 GCTCTCT
1 GCTCTCT
27171959 ATTGCCAAGC
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
22 1 0.01
23 67 0.77
25 15 0.17
26 4 0.05
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.44
Consensus pattern (23 bp):
GCTCTCTGATTAGCACTGTGTGT
Found at i:27178078 original size:21 final size:21
Alignment explanation
Indices: 27178052--27178138 Score: 77
Period size: 21 Copynumber: 4.0 Consensus size: 21
27178042 GCTTTCTATT
27178052 ATTAGCACTGTGTATGCTCTG
1 ATTAGCACTGTGTATGCTCTG
* *
27178073 ATTAGCACTTTGTGTGCTCTCTG
1 ATTAGCACTGTGTATG--CTCTG
*
27178096 ATTAGTACTTTGTGTACT-CTCTG
1 ATTAGCAC--TGTGTA-TGCTCTG
* *
27178119 TTTAGCACTGTGTGTGCTCT
1 ATTAGCACTGTGTATGCTCT
27178139 CTTTTGCCCA
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
20 1 0.02
21 23 0.44
23 23 0.44
25 4 0.08
26 1 0.02
ACGTcount: A:0.15, C:0.20, G:0.22, T:0.44
Consensus pattern (21 bp):
ATTAGCACTGTGTATGCTCTG
Found at i:27178090 original size:46 final size:46
Alignment explanation
Indices: 27178020--27178140 Score: 122
Period size: 46 Copynumber: 2.6 Consensus size: 46
27178010 CACTAGCACG
* * * *
27178020 CTCTCTGTTTAGCAC-GTCTCGTGCTTTCT-ATTATTAGCACTGTGTA
1 CTCTCTGATTAGCACTGTGT-GTGCTCTCTGATTAGTA-CACTGTGTA
* **
27178066 -TGCTCTGATTAGCACTTTGTGTGCTCTCTGATTAGTACTTTGTGTA
1 CT-CTCTGATTAGCACTGTGTGTGCTCTCTGATTAGTACACTGTGTA
*
27178112 CTCTCTGTTTAGCACTGTGTGTGCTCTCT
1 CTCTCTGATTAGCACTGTGTGTGCTCTCT
27178141 TTTGCCCAGC
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
45 1 0.02
46 52 0.84
47 9 0.15
ACGTcount: A:0.13, C:0.22, G:0.20, T:0.45
Consensus pattern (46 bp):
CTCTCTGATTAGCACTGTGTGTGCTCTCTGATTAGTACACTGTGTA
Found at i:27178094 original size:23 final size:23
Alignment explanation
Indices: 27178052--27178140 Score: 110
Period size: 23 Copynumber: 4.0 Consensus size: 23
27178042 GCTTTCTATT
*
27178052 ATTAGCACTGTGTATG--CTCTG
1 ATTAGCACTGTGTGTGCTCTCTG
*
27178073 ATTAGCACTTTGTGTGCTCTCTG
1 ATTAGCACTGTGTGTGCTCTCTG
* * *
27178096 ATTAGTACTTTGTGTACTCTCTG
1 ATTAGCACTGTGTGTGCTCTCTG
*
27178119 TTTAGCACTGTGTGTGCTCTCT
1 ATTAGCACTGTGTGTGCTCTCT
27178141 TTTGCCCAGC
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
21 14 0.24
23 44 0.76
ACGTcount: A:0.15, C:0.20, G:0.21, T:0.44
Consensus pattern (23 bp):
ATTAGCACTGTGTGTGCTCTCTG
Found at i:27178175 original size:21 final size:20
Alignment explanation
Indices: 27178068--27178189 Score: 73
Period size: 23 Copynumber: 5.3 Consensus size: 20
27178058 ACTGTGTATG
27178068 CTCTGATTAGCACTTTGTGTGCT
1 CTCTG-TTAGCAC-TT-TGTGCT
*
27178091 CTCTGATTAGTACTTTGTGTACT
1 CTCTG-TTAGCACTTTGTG--CT
27178114 CTCTGTTTAGCACTGTGTGTGCT
1 CTCTG-TTAGCACT-T-TGTGCT
*
27178137 CTCTTTTGCCCAGCACTTATGTGCT
1 CTCTGTT----AGCACTT-TGTGCT
* *
27178162 CTCTGTTAGTACTTTGGTACT
1 CTCTGTTAGCACTTT-GTGCT
27178183 CTCTGTT
1 CTCTGTT
27178190 TGTTCCGTAT
Statistics
Matches: 82, Mismatches: 8, Indels: 20
0.75 0.07 0.18
Matches are distributed among these distances:
20 1 0.01
21 21 0.26
22 4 0.05
23 32 0.39
24 1 0.01
25 17 0.21
26 6 0.07
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.45
Consensus pattern (20 bp):
CTCTGTTAGCACTTTGTGCT
Found at i:27180215 original size:45 final size:45
Alignment explanation
Indices: 27180130--27180218 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 45
27180120 TTGCCTAGCT
* * *
27180130 TCTTGAAGCTCCTCATCATCATCACCATTTGATAAGTAAATATCA
1 TCTTGAAGCCCCTCATCATCATCACCATCTAATAAGTAAATATCA
27180175 TCTTGAAGCCCCTCATCATCATCACCATCTAATCAA-TAAATATC
1 TCTTGAAGCCCCTCATCATCATCACCATCTAAT-AAGTAAATATC
27180219 CTCACCACCT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 38 0.95
46 2 0.05
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (45 bp):
TCTTGAAGCCCCTCATCATCATCACCATCTAATAAGTAAATATCA
Found at i:27180342 original size:30 final size:30
Alignment explanation
Indices: 27180308--27180443 Score: 92
Period size: 30 Copynumber: 4.2 Consensus size: 30
27180298 TCACCACCTC
*
27180308 CCTCACCCTCACCACCTTTACTACCAGCAT
1 CCTCACCCTCACCACCCTTACTACCAGCAT
* *
27180338 CCTCACCACCATCTCCCTCACCACCCTTACTGCCAGCAC
1 CCT------CA-C-C-CTCACCACCCTTACTACCAGCAT
*
27180377 CCTTACCCTCACCACCCTTACTACCAGCAT
1 CCTCACCCTCACCACCCTTACTACCAGCAT
** * ** * *
27180407 CCAAACCCTCAACACATTTACTACCAACAA
1 CCTCACCCTCACCACCCTTACTACCAGCAT
27180437 CCTCACC
1 CCTCACC
27180444 ACCCTCACCC
Statistics
Matches: 82, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
30 52 0.63
31 1 0.01
32 1 0.01
33 1 0.01
36 2 0.02
37 1 0.01
38 1 0.01
39 23 0.28
ACGTcount: A:0.26, C:0.51, G:0.03, T:0.20
Consensus pattern (30 bp):
CCTCACCCTCACCACCCTTACTACCAGCAT
Found at i:27180377 original size:15 final size:15
Alignment explanation
Indices: 27180359--27180405 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
27180349 TCTCCCTCAC
*
27180359 CACCCTTACTGCCAG
1 CACCCTTACTACCAG
* *
27180374 CACCCTTAC-CCTCAC
1 CACCCTTACTAC-CAG
27180389 CACCCTTACTACCAG
1 CACCCTTACTACCAG
27180404 CA
1 CA
27180406 TCCAAACCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 1 0.04
15 24 0.92
16 1 0.04
ACGTcount: A:0.23, C:0.51, G:0.06, T:0.19
Consensus pattern (15 bp):
CACCCTTACTACCAG
Found at i:27182075 original size:24 final size:24
Alignment explanation
Indices: 27182024--27182097 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
27182014 CCAAACAACA
* *
27182024 TTAGCTCTTATGAGCCT-AGATGG
1 TTAGCTCTTACGAGCCTAAAATGG
27182047 TTAGCTCTTACGAGCCTAAAATGG
1 TTAGCTCTTACGAGCCTAAAATGG
* *
27182071 TTAGCTCTTACGAGCCCAAAATAG
1 TTAGCTCTTACGAGCCTAAAATGG
27182095 TTA
1 TTA
27182098 ACCAGTATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
23 16 0.35
24 30 0.65
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (24 bp):
TTAGCTCTTACGAGCCTAAAATGG
Found at i:27184706 original size:24 final size:24
Alignment explanation
Indices: 27184679--27184729 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
27184669 TTAGAAAGTG
* *
27184679 AAATTTTTGAAACCTAAATCCCTA
1 AAATTTTTGAAACCTAAAACCCAA
27184703 AAA-TTTTGAAACCTAAAACCCAA
1 AAATTTTTGAAACCTAAAACCCAA
27184726 AAAT
1 AAAT
27184730 CCTCAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 21 0.88
24 3 0.12
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (24 bp):
AAATTTTTGAAACCTAAAACCCAA
Found at i:27185013 original size:18 final size:17
Alignment explanation
Indices: 27184966--27185013 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
27184956 GGTAAATCCC
27184966 AAATATTTTTTTTAATTT
1 AAAT-TTTTTTTTAATTT
* *
27184984 TAATTATGTTTTTAACTTT
1 AAATT-TTTTTTTAA-TTT
27185003 AAATTTTTTTT
1 AAATTTTTTTT
27185014 GTTGACGTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
17 1 0.04
18 16 0.67
19 7 0.29
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
AAATTTTTTTTTAATTT
Found at i:27185688 original size:25 final size:26
Alignment explanation
Indices: 27185631--27185690 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
27185621 GTGCAACAAA
*
27185631 TTTTATTTTAAAAATTAATAATATAT
1 TTTTTTTTTAAAAATTAATAATATAT
* * *
27185657 TTGTTTTTTTAAAGATTAA-ATTTTAT
1 TT-TTTTTTTAAAAATTAATAATATAT
27185683 TTTTTTTT
1 TTTTTTTT
27185691 CTTAGCTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 6 0.21
26 9 0.31
27 14 0.48
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (26 bp):
TTTTTTTTTAAAAATTAATAATATAT
Found at i:27185994 original size:2 final size:2
Alignment explanation
Indices: 27185987--27186048 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
27185977 CTAGAATTTA
27185987 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27186029 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
27186049 TATTTATTTA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27186136 original size:13 final size:14
Alignment explanation
Indices: 27186120--27186148 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
27186110 TATTCACTTT
27186120 AAATATA-ATTAAA
1 AAATATATATTAAA
27186133 AAATATATATTAAA
1 AAATATATATTAAA
27186147 AA
1 AA
27186149 TGATTAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAATATATATTAAA
Found at i:27195372 original size:18 final size:19
Alignment explanation
Indices: 27195349--27195387 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
27195339 TCATTTTTTT
27195349 TTATT-AATTTACAATT-TA
1 TTATTAAATTTA-AATTATA
27195367 TTATTAAATTTAAATTATA
1 TTATTAAATTTAAATTATA
27195386 TT
1 TT
27195388 TATATTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (19 bp):
TTATTAAATTTAAATTATA
Found at i:27199111 original size:42 final size:42
Alignment explanation
Indices: 27199001--27199186 Score: 207
Period size: 42 Copynumber: 4.4 Consensus size: 42
27198991 GTATAAAAAA
* * *
27199001 GAAGACTCATGTCTCGAGTTGAGCATGAGAATT-TG-TATACATG
1 GAAGACTCATGTCTCGAGATGAGAATGAG-ATTATGAT-TA-AAG
* *
27199044 GAATACTCATGTCTTGAGATGAGAATGAGATTATGATTAAAG
1 GAAGACTCATGTCTCGAGATGAGAATGAGATTATGATTAAAG
27199086 GAAGACTCATGTCTCGAGAAT-AGAATGAGATTATGATTAAAG
1 GAAGACTCATGTCTCGAG-ATGAGAATGAGATTATGATTAAAG
* * * * *
27199128 GAAGACTCATGTCTCAAGATGATAATGAGAATATAATTTAAG
1 GAAGACTCATGTCTCGAGATGAGAATGAGATTATGATTAAAG
* *
27199170 GAAGACTTATGACTCGA
1 GAAGACTCATGTCTCGA
27199187 TAGAGCATAA
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
41 2 0.02
42 90 0.73
43 31 0.25
44 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (42 bp):
GAAGACTCATGTCTCGAGATGAGAATGAGATTATGATTAAAG
Found at i:27202354 original size:22 final size:21
Alignment explanation
Indices: 27202293--27202354 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
27202283 CACTTCAAGT
*
27202293 ATTTTTAACTCAAGTGAAACA
1 ATTTTTAAATCAAGTGAAACA
* * * * *
27202314 ATATTAAAATCGAGAGAAATA
1 ATTTTTAAATCAAGTGAAACA
27202335 ATTTTTTAAATCAAGTGAAA
1 A-TTTTTAAATCAAGTGAAA
27202355 ATCTTTAAAA
Statistics
Matches: 30, Mismatches: 10, Indels: 1
0.73 0.24 0.02
Matches are distributed among these distances:
21 16 0.53
22 14 0.47
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.32
Consensus pattern (21 bp):
ATTTTTAAATCAAGTGAAACA
Found at i:27205344 original size:16 final size:16
Alignment explanation
Indices: 27205323--27205358 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
27205313 TGATGAATGG
27205323 GTTGGAATTATTAAAT
1 GTTGGAATTATTAAAT
27205339 GTTGGAATTATTAAAT
1 GTTGGAATTATTAAAT
27205355 GTTG
1 GTTG
27205359 AAATGAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (16 bp):
GTTGGAATTATTAAAT
Found at i:27208092 original size:18 final size:16
Alignment explanation
Indices: 27208061--27208104 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
27208051 GGTTTATGGT
*
27208061 TTAAAAATTTTAATTAA
1 TTAAAAA-TTTATTTAA
27208078 TT--AAATTTATTTAA
1 TTAAAAATTTATTTAA
27208092 TTAAAAATTTATT
1 TTAAAAATTTATT
27208105 CTCATTCCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 10 0.42
15 3 0.12
16 9 0.38
17 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAAAAATTTATTTAA
Found at i:27210290 original size:71 final size:72
Alignment explanation
Indices: 27210172--27210325 Score: 222
Period size: 71 Copynumber: 2.2 Consensus size: 72
27210162 CATCTCTTGG
* * *
27210172 TTCTACCGATACAACCAAGACTTCTATCAGTAGAATAAACTCTAGAGAGCAAATAAGTTATGGCC
1 TTCTACCGATACAACCAAGACTTCTATCAGTAGAACAAACTCCAGAGAGCAAAGAAGTTATGGCC
27210237 TGAGA-T
66 TGAGACT
* * * *
27210243 TTCTACCGATACAACCAAGAGTTCTATCGGTAGAACAAACTCCAGAGAGTAAAGAAGTTGTGGCC
1 TTCTACCGATACAACCAAGACTTCTATCAGTAGAACAAACTCCAGAGAGCAAAGAAGTTATGGCC
*
27210308 TGGGACT
66 TGAGACT
27210315 TT-TACCGATAC
1 TTCTACCGATAC
27210326 TTGGAAGGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
71 71 0.96
72 3 0.04
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (72 bp):
TTCTACCGATACAACCAAGACTTCTATCAGTAGAACAAACTCCAGAGAGCAAAGAAGTTATGGCC
TGAGACT
Found at i:27214986 original size:71 final size:72
Alignment explanation
Indices: 27214911--27215065 Score: 176
Period size: 71 Copynumber: 2.2 Consensus size: 72
27214901 GACTTGTTTC
* *
27214911 GATAGAAGC-CTT-CTAGGTATCA-ATAGAAGTCCCAGGCCATAACTTCTATGCTCTGTAGAGTT
1 GATAGAAGCTCTTGCT-GGTAT-AGATAGAAGTCCCAGGCCACAACTTCTATACTCTGTAGAGTT
27214973 TATTCTACT
64 TATTCTACT
* * * * * * *
27214982 GATAGAA-CTCTTGGTTGTATAGGTAGAAGTCCCAGGCCACAACTTCTTTACTCTTTGGAGTTTG
1 GATAGAAGCTCTTGCTGGTATAGATAGAAGTCCCAGGCCACAACTTCTATACTCTGTAGAGTTTA
27215046 TTCTACT
66 TTCTACT
27215053 GATAGAAG-TCTTG
1 GATAGAAGCTCTTG
27215066 GTTGTTAATC
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
70 2 0.03
71 68 0.96
72 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (72 bp):
GATAGAAGCTCTTGCTGGTATAGATAGAAGTCCCAGGCCACAACTTCTATACTCTGTAGAGTTTA
TTCTACT
Done.