Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 1 of 135
Found at i:12 original size:7 final size:7
Alignment explanation
Indices: 1--739 Score: 1286
Period size: 7 Copynumber: 105.9 Consensus size: 7
*
1 AAACCCG
1 AAACCCT
*
8 AAACCCG
1 AAACCCT
15 AAACCCT
1 AAACCCT
22 AAAACCCT
1 -AAACCCT
30 AAACCCT
1 AAACCCT
37 AAAACCCT
1 -AAACCCT
45 AAACCCT
1 AAACCCT
52 AAACCCT
1 AAACCCT
59 AAACCCT
1 AAACCCT
66 AAACCCT
1 AAACCCT
73 AAACCCT
1 AAACCCT
80 AAAACCCT
1 -AAACCCT
88 AAACCCT
1 AAACCCT
95 AAACCCT
1 AAACCCT
102 -AACCCT
1 AAACCCT
108 -AACCCT
1 AAACCCT
114 AAACCCT
1 AAACCCT
121 AAACCCT
1 AAACCCT
128 AAACCCT
1 AAACCCT
135 AAACCCT
1 AAACCCT
142 AAACCCT
1 AAACCCT
149 AAACCCT
1 AAACCCT
156 AAACCCT
1 AAACCCT
163 AAACCCT
1 AAACCCT
170 AAACCCT
1 AAACCCT
177 AAACCCT
1 AAACCCT
184 AAACCCT
1 AAACCCT
191 AAAACCCT
1 -AAACCCT
199 AAACCCT
1 AAACCCT
206 AAACCCT
1 AAACCCT
213 AAACCCT
1 AAACCCT
220 AAACCCT
1 AAACCCT
227 AAACCCT
1 AAACCCT
234 AAAACCCCT
1 -AAA-CCCT
243 AAACCCT
1 AAACCCT
250 AAACCCT
1 AAACCCT
257 -AACCCT
1 AAACCCT
263 AAACCCT
1 AAACCCT
270 AAACCCT
1 AAACCCT
277 AAACCCT
1 AAACCCT
284 AAACCCT
1 AAACCCT
291 AAACCCT
1 AAACCCT
298 AAACCCT
1 AAACCCT
305 AAA-CCT
1 AAACCCT
311 AAACCCT
1 AAACCCT
318 AAACCCT
1 AAACCCT
325 AAACCCT
1 AAACCCT
332 AAACCCT
1 AAACCCT
339 AAACCCT
1 AAACCCT
346 AAACCCT
1 AAACCCT
353 AAACCCT
1 AAACCCT
360 AAACCCT
1 AAACCCT
367 AAACCCT
1 AAACCCT
374 AAACCCT
1 AAACCCT
381 AAAACCCT
1 -AAACCCT
389 AAAACCCT
1 -AAACCCT
397 AAAACCCT
1 -AAACCCT
405 AAAACCCT
1 -AAACCCT
413 AAACCCT
1 AAACCCT
420 AAACCCT
1 AAACCCT
427 AAACCCT
1 AAACCCT
434 AAA-CCT
1 AAACCCT
440 AAACCCT
1 AAACCCT
447 AAACCCT
1 AAACCCT
454 AAACCCT
1 AAACCCT
461 -AACCCT
1 AAACCCT
467 -AACCCT
1 AAACCCT
473 AAACCCT
1 AAACCCT
480 -AACCCT
1 AAACCCT
486 AAACCCT
1 AAACCCT
493 -AACCCT
1 AAACCCT
499 AAACCCT
1 AAACCCT
506 AAACCCT
1 AAACCCT
513 AAACCCT
1 AAACCCT
520 AAA-CCT
1 AAACCCT
526 AAACCCT
1 AAACCCT
533 AAACCCT
1 AAACCCT
540 AAACCCT
1 AAACCCT
547 AAACCCT
1 AAACCCT
554 AAACCCT
1 AAACCCT
561 -AACCCT
1 AAACCCT
567 AAACCCT
1 AAACCCT
574 AAACCCT
1 AAACCCT
581 AAACCCT
1 AAACCCT
588 AAACCCT
1 AAACCCT
595 AAACCCT
1 AAACCCT
602 AAACCCT
1 AAACCCT
609 AAACCCT
1 AAACCCT
616 AAACCCT
1 AAACCCT
623 AAACCCT
1 AAACCCT
630 AAACCCT
1 AAACCCT
637 AAACCCT
1 AAACCCT
644 AAACCCT
1 AAACCCT
651 AAACCCT
1 AAACCCT
658 AAACCCT
1 AAACCCT
665 AAACCCT
1 AAACCCT
672 AAACCCT
1 AAACCCT
679 AAACCCT
1 AAACCCT
686 AAACCCT
1 AAACCCT
693 AAACCCT
1 AAACCCT
700 AAA-CCT
1 AAACCCT
706 AAACCCT
1 AAACCCT
713 AAACCCT
1 AAACCCT
720 AAACCCT
1 AAACCCT
727 AAACCCT
1 AAACCCT
734 AAACCC
1 AAACCC
740 CGAGCCCCGA
Statistics
Matches: 714, Mismatches: 1, Indels: 34
0.95 0.00 0.05
Matches are distributed among these distances:
6 72 0.10
7 573 0.80
8 65 0.09
9 4 0.01
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
AAACCCT
Found at i:1225 original size:29 final size:29
Alignment explanation
Indices: 1202--1376 Score: 103
Period size: 29 Copynumber: 6.1 Consensus size: 29
1192 GAACCTCGAT
1202 CCCCCAAACCCCAAACCCCAAACCCCAAA
1 CCCCCAAACCCCAAACCCCAAACCCCAAA
* * *
1231 CCCCCAAGCCCCAAGCCCCAAACCATC-AA
1 CCCCCAAACCCCAAACCCCAAACC-CCAAA
* ** *
1260 CCCTC-AACCTTAAACCCTAAA-CCCAAA
1 CCCCCAAACCCCAAACCCCAAACCCCAAA
* * * * *
1287 ACCCTAAACCTCAAAACCCCTAATCCCCCAA
1 CCCCCAAACC-CCAAACCCC-AAACCCCAAA
* * * * *
1318 --CCCAAACCCCGAGCCCCGAGCCTCGAAA
1 CCCCCAAACCCCAAACCCCAAACC-CCAAA
*
1346 -CCCCAAACCCTAAACCCCAAACCCC-AA
1 CCCCCAAACCCCAAACCCCAAACCCCAAA
1373 CCCC
1 CCCC
1377 AGACTCTAAT
Statistics
Matches: 105, Mismatches: 32, Indels: 19
0.67 0.21 0.12
Matches are distributed among these distances:
26 1 0.01
27 10 0.10
28 28 0.27
29 58 0.55
30 3 0.03
31 5 0.05
ACGTcount: A:0.37, C:0.53, G:0.04, T:0.06
Consensus pattern (29 bp):
CCCCCAAACCCCAAACCCCAAACCCCAAA
Found at i:1242 original size:7 final size:7
Alignment explanation
Indices: 1--1377 Score: 627
Period size: 7 Copynumber: 196.1 Consensus size: 7
*
1 AAACCCG
1 AAACCCC
*
8 AAACCCG
1 AAACCCC
*
15 AAACCCTA
1 AAACCC-C
*
23 AAACCCT
1 AAACCCC
*
30 AAACCCTA
1 AAACCC-C
*
38 AAACCCT
1 AAACCCC
*
45 AAACCCT
1 AAACCCC
*
52 AAACCCT
1 AAACCCC
*
59 AAACCCT
1 AAACCCC
*
66 AAACCCT
1 AAACCCC
*
73 AAACCCTA
1 AAACCC-C
*
81 AAACCCT
1 AAACCCC
*
88 AAACCCT
1 AAACCCC
95 AAA-CCC
1 AAACCCC
*
101 TAA-CCC
1 AAACCCC
* *
107 TAACCCT
1 AAACCCC
*
114 AAACCCT
1 AAACCCC
*
121 AAACCCT
1 AAACCCC
*
128 AAACCCT
1 AAACCCC
*
135 AAACCCT
1 AAACCCC
*
142 AAACCCT
1 AAACCCC
*
149 AAACCCT
1 AAACCCC
*
156 AAACCCT
1 AAACCCC
*
163 AAACCCT
1 AAACCCC
*
170 AAACCCT
1 AAACCCC
*
177 AAACCCT
1 AAACCCC
*
184 AAACCCTA
1 AAACCC-C
*
192 AAACCCT
1 AAACCCC
*
199 AAACCCT
1 AAACCCC
*
206 AAACCCT
1 AAACCCC
*
213 AAACCCT
1 AAACCCC
*
220 AAACCCT
1 AAACCCC
*
227 AAACCCTA
1 AAACCC-C
235 AAACCCC
1 AAACCCC
*
242 TAAACCCT
1 -AAACCCC
250 AAA-CCC
1 AAACCCC
* *
256 TAACCCT
1 AAACCCC
*
263 AAACCCT
1 AAACCCC
*
270 AAACCCT
1 AAACCCC
*
277 AAACCCT
1 AAACCCC
*
284 AAACCCT
1 AAACCCC
*
291 AAACCCT
1 AAACCCC
*
298 AAACCCT
1 AAACCCC
*
305 AAA-CCT
1 AAACCCC
*
311 AAACCCT
1 AAACCCC
*
318 AAACCCT
1 AAACCCC
*
325 AAACCCT
1 AAACCCC
*
332 AAACCCT
1 AAACCCC
*
339 AAACCCT
1 AAACCCC
*
346 AAACCCT
1 AAACCCC
*
353 AAACCCT
1 AAACCCC
*
360 AAACCCT
1 AAACCCC
*
367 AAACCCT
1 AAACCCC
*
374 AAACCCTA
1 AAACCC-C
*
382 AAACCCTA
1 AAACCC-C
*
390 AAACCCTA
1 AAACCC-C
*
398 AAACCCTA
1 AAACCC-C
*
406 AAACCCT
1 AAACCCC
*
413 AAACCCT
1 AAACCCC
*
420 AAACCCT
1 AAACCCC
*
427 AAACCCT
1 AAACCCC
*
434 AAA-CCT
1 AAACCCC
*
440 AAACCCT
1 AAACCCC
*
447 AAACCCT
1 AAACCCC
454 AAA-CCC
1 AAACCCC
*
460 TAA-CCC
1 AAACCCC
* *
466 TAACCCT
1 AAACCCC
473 AAA-CCC
1 AAACCCC
* *
479 TAACCCT
1 AAACCCC
486 AAA-CCC
1 AAACCCC
* *
492 TAACCCT
1 AAACCCC
*
499 AAACCCT
1 AAACCCC
*
506 AAACCCT
1 AAACCCC
*
513 AAACCCT
1 AAACCCC
*
520 AAA-CCT
1 AAACCCC
*
526 AAACCCT
1 AAACCCC
*
533 AAACCCT
1 AAACCCC
*
540 AAACCCT
1 AAACCCC
*
547 AAACCCT
1 AAACCCC
554 AAA-CCC
1 AAACCCC
* *
560 TAACCCT
1 AAACCCC
*
567 AAACCCT
1 AAACCCC
*
574 AAACCCT
1 AAACCCC
*
581 AAACCCT
1 AAACCCC
*
588 AAACCCT
1 AAACCCC
*
595 AAACCCT
1 AAACCCC
*
602 AAACCCT
1 AAACCCC
*
609 AAACCCT
1 AAACCCC
*
616 AAACCCT
1 AAACCCC
*
623 AAACCCT
1 AAACCCC
*
630 AAACCCT
1 AAACCCC
*
637 AAACCCT
1 AAACCCC
*
644 AAACCCT
1 AAACCCC
*
651 AAACCCT
1 AAACCCC
*
658 AAACCCT
1 AAACCCC
*
665 AAACCCT
1 AAACCCC
*
672 AAACCCT
1 AAACCCC
*
679 AAACCCT
1 AAACCCC
*
686 AAACCCT
1 AAACCCC
*
693 AAACCCT
1 AAACCCC
*
700 AAA-CCT
1 AAACCCC
*
706 AAACCCT
1 AAACCCC
*
713 AAACCCT
1 AAACCCC
*
720 AAACCCT
1 AAACCCC
*
727 AAACCCT
1 AAACCCC
734 AAACCCC
1 AAACCCC
* *
741 GAGCCCC
1 AAACCCC
* *
748 GAGCCCC
1 AAACCCC
* *
755 GAGCCCC
1 AAACCCC
*
762 GAACCCC
1 AAACCCC
*
769 GAACCCC
1 AAACCCC
*
776 GAACCCC
1 AAACCCC
*
783 GAACCCC
1 AAACCCC
*
790 GAACCCC
1 AAACCCC
*
797 GAACCCC
1 AAACCCC
*
804 GAACCCC
1 AAACCCC
811 GAAACCCC
1 -AAACCCC
819 GAAACCCC
1 -AAACCCC
827 GAAA-CCC
1 -AAACCCC
*
834 GAA-CCC
1 AAACCCC
*
840 GAACCCC
1 AAACCCC
*
847 GAACCCC
1 AAACCCC
*
854 GAACCCC
1 AAACCCC
*
861 GAACCCC
1 AAACCCC
*
868 GAACCCC
1 AAACCCC
*
875 GAACCCC
1 AAACCCC
*
882 GAACCCC
1 AAACCCC
* *
889 GAACCCT
1 AAACCCC
*
896 AAACCCT
1 AAACCCC
*
903 GAACCCC
1 AAACCCC
*
910 GAACCCC
1 AAACCCC
*
917 GAACCCC
1 AAACCCC
*
924 AAACCCT
1 AAACCCC
931 AAACCCC
1 AAACCCC
*
938 GAACCCC
1 AAACCCC
*
945 AAACCCT
1 AAACCCC
*
952 AAACCCT
1 AAACCCC
959 AAACCCC
1 AAACCCC
* *
966 GAGCCCC
1 AAACCCC
* *
973 GAGCCCC
1 AAACCCC
* *
980 GAGCCCC
1 AAACCCC
**
987 GAGCCCCC
1 -AAACCCC
*
995 GAA-CCC
1 AAACCCC
*
1001 AACCCCC
1 AAACCCC
1008 AAACCCC
1 AAACCCC
*
1015 CAACCCC
1 AAACCCC
1022 AAACCCC
1 AAACCCC
**
1029 AAACCTG
1 AAACCCC
*
1036 AAACCCT
1 AAACCCC
*
1043 AAACCCT
1 AAACCCC
*
1050 AAACCCT
1 AAACCCC
*
1057 AAACCCG
1 AAACCCC
*
1064 AAGCCCC
1 AAACCCC
*
1071 GAAACCCT
1 -AAACCCC
*
1079 AAGCCCC
1 AAACCCC
1086 AAACCCC
1 AAACCCC
*
1093 AAACCCTA
1 AAACCC-C
**
1101 AAACCTT
1 AAACCCC
*
1108 AAAACCC
1 AAACCCC
*
1115 AAAGCCC
1 AAACCCC
*
1122 AAACCCT
1 AAACCCC
* **
1129 GAACCTT
1 AAACCCC
*
1136 ACA-CCC
1 AAACCCC
*
1142 AACACCCT
1 AA-ACCCC
*
1150 ACACCCC
1 AAACCCC
* *
1157 GAGCCCC
1 AAACCCC
*
1164 GAAA-CCT
1 -AAACCCC
*
1171 GAACCCC
1 AAACCCC
*
1178 GAACCCC
1 AAACCCC
* *
1185 GAACCTC
1 AAACCCC
* *
1192 GAACCTCG
1 AAACC-CC
**
1200 ATCCCCC
1 AAACCCC
1207 AAACCCC
1 AAACCCC
1214 AAACCCC
1 AAACCCC
1221 AAACCCC
1 AAACCCC
1228 AAACCCCC
1 AAA-CCCC
*
1236 AAGCCCC
1 AAACCCC
*
1243 AAGCCCC
1 AAACCCC
*
1250 AAACCATC
1 AAACC-CC
1258 -AACCCTC
1 AAACCC-C
**
1265 -AACCTT
1 AAACCCC
*
1271 AAACCCT
1 AAACCCC
*
1278 AAACCCA
1 AAACCCC
*
1285 AAACCCT
1 AAACCCC
*
1292 AAACCTCA
1 AAACC-CC
1300 AAACCCC
1 AAACCCC
*
1307 TAATCCCC
1 -AAACCCC
*
1315 CAA-CCC
1 AAACCCC
1321 AAACCCC
1 AAACCCC
* *
1328 GAGCCCC
1 AAACCCC
* * *
1335 GAGCCTCG
1 AAACC-CC
1343 AAACCCC
1 AAACCCC
*
1350 AAACCCT
1 AAACCCC
1357 AAACCCC
1 AAACCCC
1364 AAACCCC
1 AAACCCC
1371 -AACCCC
1 AAACCCC
1377 A
1 A
1378 GACTCTAATC
Statistics
Matches: 1195, Mismatches: 138, Indels: 74
0.85 0.10 0.05
Matches are distributed among these distances:
6 87 0.07
7 981 0.82
8 127 0.11
ACGTcount: A:0.39, C:0.47, G:0.05, T:0.10
Consensus pattern (7 bp):
AAACCCC
Found at i:1437 original size:6 final size:7
Alignment explanation
Indices: 1429--1518 Score: 83
Period size: 7 Copynumber: 13.0 Consensus size: 7
1419 CGAAATTAAA
1429 CCCAAAC
1 CCCAAAC
1436 CCCAAAC
1 CCCAAAC
1443 CCCAAA-
1 CCCAAAC
*
1449 CCCAAGC
1 CCCAAAC
*
1456 CCCAAGC
1 CCCAAAC
*
1463 CCCAAGC
1 CCCAAAC
*
1470 CCCAAGC
1 CCCAAAC
*
1477 CCCAAGC
1 CCCAAAC
*
1484 CCCAAGC
1 CCCAAAC
*
1491 CCCAAGC
1 CCCAAAC
*
1498 CCCAAGC
1 CCCAAAC
*
1505 CCTAAAC
1 CCCAAAC
*
1512 CCTAAAC
1 CCCAAAC
1519 TCCTATGCAC
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
6 5 0.06
7 74 0.94
ACGTcount: A:0.34, C:0.54, G:0.09, T:0.02
Consensus pattern (7 bp):
CCCAAAC
Found at i:1441 original size:7 final size:7
Alignment explanation
Indices: 1429--1506 Score: 122
Period size: 7 Copynumber: 11.3 Consensus size: 7
1419 CGAAATTAAA
*
1429 CCCAAAC
1 CCCAAGC
*
1436 CCCAAAC
1 CCCAAGC
*
1443 CCCAA-A
1 CCCAAGC
1449 CCCAAGC
1 CCCAAGC
1456 CCCAAGC
1 CCCAAGC
1463 CCCAAGC
1 CCCAAGC
1470 CCCAAGC
1 CCCAAGC
1477 CCCAAGC
1 CCCAAGC
1484 CCCAAGC
1 CCCAAGC
1491 CCCAAGC
1 CCCAAGC
1498 CCCAAGC
1 CCCAAGC
1505 CC
1 CC
1507 TAAACCCTAA
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
6 5 0.07
7 63 0.93
ACGTcount: A:0.32, C:0.58, G:0.10, T:0.00
Consensus pattern (7 bp):
CCCAAGC
Found at i:3045 original size:12 final size:11
Alignment explanation
Indices: 3006--3091 Score: 59
Period size: 11 Copynumber: 7.7 Consensus size: 11
2996 GGAAAATCAA
*
3006 AATAATAATA-
1 AATAAAAATAC
*
3016 AACAAAAATAC
1 AATAAAAATAC
*
3027 AATAAAAATTC
1 AATAAAAATAC
*
3038 AATAAAAA-AG
1 AATAAAAATAC
*
3048 AACCAAAAATAC
1 AA-TAAAAATAC
* *
3060 TGACAAAAATAC
1 -AATAAAAATAC
*
3072 AATAAAAATTC
1 AATAAAAATAC
3083 AAATAAAAA
1 -AATAAAAA
3092 GAACCAAAAT
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
10 10 0.17
11 30 0.51
12 18 0.31
13 1 0.02
ACGTcount: A:0.70, C:0.10, G:0.02, T:0.17
Consensus pattern (11 bp):
AATAAAAATAC
Found at i:4520 original size:103 final size:103
Alignment explanation
Indices: 4383--4570 Score: 290
Period size: 103 Copynumber: 1.8 Consensus size: 103
4373 TTCAAAAAAA
* * *
4383 ATTTATATTTTTAAATAAATTGATATTTAATTGATTGAT-GACTAGACATCAAATTTAATAAATT
1 ATTTATATTTTTAAATAAATTGACATTTAATTGATTGATAGA-TAAACATCAAACTTAATAAATT
4447 GATGATATTTTATTAAAAAATAAGTGATTTAAATTTATT
65 GATGATATTTTATTAAAAAATAAGTGATTTAAATTTATT
* * *
4486 ATTTATATTTTTGAATTAAATTGACA-TTATTTGATTGATAGATAAATATCAAACTTAATAAATT
1 ATTTATATTTTT-AAATAAATTGACATTTAATTGATTGATAGATAAACATCAAACTTAATAAATT
4550 GATGATATTTTATTAAAAAAT
65 GATGATATTTTATTAAAAAAT
4571 CTTAAACTCG
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
103 64 0.83
104 13 0.17
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (103 bp):
ATTTATATTTTTAAATAAATTGACATTTAATTGATTGATAGATAAACATCAAACTTAATAAATTG
ATGATATTTTATTAAAAAATAAGTGATTTAAATTTATT
Found at i:7574 original size:12 final size:12
Alignment explanation
Indices: 7557--7581 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7547 TGAGAGGGTT
7557 TGGACAAAAATA
1 TGGACAAAAATA
7569 TGGACAAAAATA
1 TGGACAAAAATA
7581 T
1 T
7582 AGGCCCGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (12 bp):
TGGACAAAAATA
Found at i:7744 original size:21 final size:20
Alignment explanation
Indices: 7720--7790 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 20
7710 ATTATATTGT
7720 TGTTTTGGTGCTGTTTTTTAC
1 TGTTTTGGTGCT-TTTTTTAC
* *
7741 TGTTTTAGTTGCTTTTTTTGC
1 TGTTTT-GGTGCTTTTTTTAC
*
7762 T-TTTT-TTGCTTTTTTTTTAC
1 TGTTTTGGTGC--TTTTTTTAC
7782 TGTTTTGGT
1 TGTTTTGGT
7791 TGTTATTTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
18 4 0.10
20 13 0.32
21 18 0.44
22 6 0.15
ACGTcount: A:0.04, C:0.08, G:0.18, T:0.69
Consensus pattern (20 bp):
TGTTTTGGTGCTTTTTTTAC
Found at i:7765 original size:8 final size:9
Alignment explanation
Indices: 7749--7777 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
7739 ACTGTTTTAG
7749 TTGCTTTTT
1 TTGCTTTTT
7758 TTGCTTTTT
1 TTGCTTTTT
7767 TTGCTTTTT
1 TTGCTTTTT
7776 TT
1 TT
7778 TTACTGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.10, G:0.10, T:0.79
Consensus pattern (9 bp):
TTGCTTTTT
Found at i:7787 original size:10 final size:10
Alignment explanation
Indices: 7728--7777 Score: 52
Period size: 9 Copynumber: 5.1 Consensus size: 10
7718 GTTGTTTTGG
7728 TGCTGTTTTT
1 TGCTGTTTTT
*
7738 TACTGTTTTAGT
1 TGCTGTTTT--T
7750 TGCT-TTTTT
1 TGCTGTTTTT
7759 TGCT-TTTTT
1 TGCTGTTTTT
7768 TGCT-TTTTT
1 TGCTGTTTTT
7777 T
1 T
7778 TTACTGTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
9 20 0.56
10 8 0.22
11 4 0.11
12 4 0.11
ACGTcount: A:0.04, C:0.10, G:0.14, T:0.72
Consensus pattern (10 bp):
TGCTGTTTTT
Found at i:7799 original size:12 final size:12
Alignment explanation
Indices: 7784--7895 Score: 94
Period size: 12 Copynumber: 9.9 Consensus size: 12
7774 TTTTTTACTG
*
7784 TTTTGGTTGTTA
1 TTTTTGTTGTTA
*
7796 TTTTCG-TGTTA
1 TTTTTGTTGTTA
**
7807 TTTTTACTGTTA
1 TTTTTGTTGTTA
7819 TTTTTGTTGTTA
1 TTTTTGTTGTTA
*
7831 TTTTTGTGGTT-
1 TTTTTGTTGTTA
*
7842 TTTATGTTG---
1 TTTTTGTTGTTA
*
7851 --TTTGCTGTTA
1 TTTTTGTTGTTA
*
7861 TTTTTGCTGTTA
1 TTTTTGTTGTTA
*
7873 TTTTGGTTGTTA
1 TTTTTGTTGTTA
7885 TTTTTGTTGTT
1 TTTTTGTTGTT
7896 TGGATGTTAT
Statistics
Matches: 81, Mismatches: 13, Indels: 12
0.76 0.12 0.11
Matches are distributed among these distances:
7 5 0.06
11 16 0.20
12 60 0.74
ACGTcount: A:0.08, C:0.04, G:0.20, T:0.69
Consensus pattern (12 bp):
TTTTTGTTGTTA
Found at i:7859 original size:42 final size:44
Alignment explanation
Indices: 7813--7909 Score: 135
Period size: 42 Copynumber: 2.2 Consensus size: 44
7803 GTTATTTTTA
* *
7813 CTGTTATTTTTGTTGTTATTTTTGTGGTT-TTTATGTTGTTT-G
1 CTGTTATTTTTGCTGTTATTTTGGTGGTTATTTATGTTGTTTGG
* *
7855 CTGTTATTTTTGCTGTTATTTTGGTTGTTATTTTTGTTGTTTGG
1 CTGTTATTTTTGCTGTTATTTTGGTGGTTATTTATGTTGTTTGG
*
7899 ATGTTATTTTT
1 CTGTTATTTTT
7910 TTATGCGTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 26 0.54
43 11 0.23
44 11 0.23
ACGTcount: A:0.08, C:0.03, G:0.21, T:0.68
Consensus pattern (44 bp):
CTGTTATTTTTGCTGTTATTTTGGTGGTTATTTATGTTGTTTGG
Found at i:7910 original size:21 final size:22
Alignment explanation
Indices: 7840--7909 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 22
7830 ATTTTTGTGG
*
7840 TTTTTATGTTGTTT-GCTGTTA
1 TTTTTATGTTGTTTGGATGTTA
* * *
7861 TTTTTGCTGTTATTTTGGTTGTTA
1 TTTTT-ATGTT-GTTTGGATGTTA
7885 -TTTT-TGTTGTTTGGATGTTA
1 TTTTTATGTTGTTTGGATGTTA
7905 TTTTT
1 TTTTT
7910 TTATGCGTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
20 10 0.25
21 13 0.32
22 4 0.10
23 7 0.17
24 6 0.15
ACGTcount: A:0.09, C:0.03, G:0.20, T:0.69
Consensus pattern (22 bp):
TTTTTATGTTGTTTGGATGTTA
Found at i:8737 original size:22 final size:22
Alignment explanation
Indices: 8711--8754 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8701 AGCTTATCAT
* *
8711 TGTTTTTTTATACTCCTATAAA
1 TGTTTTTTAAAACTCCTATAAA
*
8733 TGTTTTTTAAAACTGCTATAAA
1 TGTTTTTTAAAACTCCTATAAA
8755 AAGTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.50
Consensus pattern (22 bp):
TGTTTTTTAAAACTCCTATAAA
Found at i:9888 original size:49 final size:49
Alignment explanation
Indices: 9769--9876 Score: 153
Period size: 49 Copynumber: 2.2 Consensus size: 49
9759 ATACTTTTTA
* * * *
9769 AATAGGTATCAGTACTATATAACATATATCAATATCAGAGATTTAGATG
1 AATAGGTATCAGTACAATATAACAGATATCAATATCAGAAACTTAGATG
* **
9818 AATAGGTATCAGTACAATATAACAGGTATTGATATCAGAAACTTAGATG
1 AATAGGTATCAGTACAATATAACAGATATCAATATCAGAAACTTAGATG
9867 AATAGGTATC
1 AATAGGTATC
9877 GATACCATAT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.31
Consensus pattern (49 bp):
AATAGGTATCAGTACAATATAACAGATATCAATATCAGAAACTTAGATG
Found at i:15452 original size:21 final size:20
Alignment explanation
Indices: 15395--15460 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 20
15385 AGTTTTTATG
*
15395 ATTTTTTATTTAATTTTTACA
1 ATTTTTTATATAA-TTTTACA
*
15416 A--GTTTATATAATTTTA-A
1 ATTTTTTATATAATTTTACA
*
15433 TATTTTTTATAATTATTTTACA
1 -ATTTTTTAT-ATAATTTTACA
15455 ATTTTT
1 ATTTTT
15461 ATTAGTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
17 1 0.03
18 6 0.17
19 8 0.22
20 5 0.14
21 15 0.42
22 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTTTTATATAATTTTACA
Found at i:15548 original size:19 final size:18
Alignment explanation
Indices: 15524--15574 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
15514 TTAATTTGAT
15524 TTTTTTATAATTTATTAAA
1 TTTTTTATAATTT-TTAAA
*
15543 TTTTTTAT-ATTTTTATA
1 TTTTTTATAATTTTTAAA
**
15560 TTACTTATAATTTTT
1 TTTTTTATAATTTTT
15575 TATAACTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 10 0.36
18 10 0.36
19 8 0.29
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTTATAATTTTTAAA
Found at i:15586 original size:11 final size:10
Alignment explanation
Indices: 15524--15587 Score: 64
Period size: 10 Copynumber: 6.7 Consensus size: 10
15514 TTAATTTGAT
15524 TTTTTTATAA
1 TTTTTTATAA
*
15534 TTTATTA-AA
1 TTTTTTATAA
15543 TTTTTTAT-A
1 TTTTTTATAA
15552 -TTTTTAT-A
1 TTTTTTATAA
**
15560 TTACTTATAA
1 TTTTTTATAA
15570 TTTTTTATAA
1 TTTTTTATAA
15580 CTTTTTTA
1 -TTTTTTA
15588 AGTTTATATC
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
8 8 0.18
9 14 0.32
10 15 0.34
11 7 0.16
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:15594 original size:36 final size:36
Alignment explanation
Indices: 15528--15596 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
15518 TTTGATTTTT
*
15528 TTATAATTTATTAAATTTTTTATATTTTTATATTAC
1 TTATAATTTATTAAATTTTTTATATGTTTATATTAC
*
15564 TTATAATTTTTTATAACTTTTTTA-A-GTTTATAT
1 TTATAATTTATTA-AA-TTTTTTATATGTTTATAT
15597 CAATTTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
36 19 0.66
37 3 0.10
38 7 0.24
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (36 bp):
TTATAATTTATTAAATTTTTTATATGTTTATATTAC
Found at i:15833 original size:22 final size:24
Alignment explanation
Indices: 15808--15860 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 24
15798 TAATCAGGTG
*
15808 TTTTTAATAAATTAA-CCTTTT-A
1 TTTTTAAGAAATTAATCCTTTTGA
* *
15830 TTTTTAAGAATTTAATCCTTTTGC
1 TTTTTAAGAAATTAATCCTTTTGA
15854 TTTTTAA
1 TTTTTAA
15861 ATTTAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 13 0.50
23 6 0.23
24 7 0.27
ACGTcount: A:0.30, C:0.09, G:0.04, T:0.57
Consensus pattern (24 bp):
TTTTTAAGAAATTAATCCTTTTGA
Found at i:29693 original size:19 final size:20
Alignment explanation
Indices: 29671--29747 Score: 72
Period size: 19 Copynumber: 4.0 Consensus size: 20
29661 TAACAGATCG
*
29671 TTAATGTTTTAAG-AATTAT
1 TTAATGTTTTTAGAAATTAT
*
29690 TTAAT-TTTTTAG-AATTTT
1 TTAATGTTTTTAGAAATTAT
* * *
29708 TTCATGTTTTTAGTAGTTAT
1 TTAATGTTTTTAGAAATTAT
*
29728 TAAATG-TTTTAGAAATTAT
1 TTAATGTTTTTAGAAATTAT
29747 T
1 T
29748 AATCTCTTAA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
18 15 0.32
19 24 0.51
20 8 0.17
ACGTcount: A:0.31, C:0.01, G:0.10, T:0.57
Consensus pattern (20 bp):
TTAATGTTTTTAGAAATTAT
Found at i:32345 original size:29 final size:29
Alignment explanation
Indices: 32312--32377 Score: 105
Period size: 29 Copynumber: 2.3 Consensus size: 29
32302 GAAGTCGTAA
*
32312 TAATATTTTATATAAAAATACCTTTTTAT
1 TAATATTTTATATAAAAATACCATTTTAT
* *
32341 TAATAATTTATATAAAAATATCATTTTAT
1 TAATATTTTATATAAAAATACCATTTTAT
32370 TAATATTT
1 TAATATTT
32378 ACTACTTTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.52
Consensus pattern (29 bp):
TAATATTTTATATAAAAATACCATTTTAT
Found at i:33423 original size:31 final size:30
Alignment explanation
Indices: 33382--33442 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
33372 ATCTATGTAC
* *
33382 ACAAATATATTTATGAACATTAAATAAACAA
1 ACAAACATATTCAT-AACATTAAATAAACAA
**
33413 ACAAACATATTCATAATTTTAAATAAACAA
1 ACAAACATATTCATAACATTAAATAAACAA
33443 TAATGAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (30 bp):
ACAAACATATTCATAACATTAAATAAACAA
Found at i:38874 original size:4 final size:4
Alignment explanation
Indices: 38865--38905 Score: 66
Period size: 4 Copynumber: 10.5 Consensus size: 4
38855 AAATAAACGG
*
38865 GAAA GAAA GAAA GAAA GAAA GAAA G-AA GAAT GAAA GAAA GA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GA
38906 TAATGTGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 3 0.09
4 31 0.91
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (4 bp):
GAAA
Found at i:41915 original size:14 final size:14
Alignment explanation
Indices: 41896--41981 Score: 53
Period size: 14 Copynumber: 6.6 Consensus size: 14
41886 GATTCATGTA
41896 TAAGATTTAGGGTT
1 TAAGATTTAGGGTT
*
41910 TAAGATTTTA-AGTT
1 TAAGA-TTTAGGGTT
* *
41924 TAACATTTATGGTT
1 TAAGATTTAGGGTT
*
41938 T-AG-----GGTTT
1 TAAGATTTAGGGTT
41946 TAAG-TTTAGGGTT
1 TAAGATTTAGGGTT
*
41959 TAAGATTTAGGATT
1 TAAGATTTAGGGTT
*
41973 TAAGGTTTA
1 TAAGATTTA
41982 ATGTTATGAA
Statistics
Matches: 55, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
8 4 0.07
9 2 0.04
13 13 0.24
14 32 0.58
15 4 0.07
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.47
Consensus pattern (14 bp):
TAAGATTTAGGGTT
Found at i:41932 original size:28 final size:28
Alignment explanation
Indices: 41900--41953 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
41890 CATGTATAAG
41900 ATTTAGGGTTTAAGATTTTAAGTTTAAC
1 ATTTAGGGTTTAAGATTTTAAGTTTAAC
* * *
41928 ATTTATGGTTTAGGGTTTTAAGTTTA
1 ATTTAGGGTTTAAGATTTTAAGTTTA
41954 GGGTTTAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.28, C:0.02, G:0.20, T:0.50
Consensus pattern (28 bp):
ATTTAGGGTTTAAGATTTTAAGTTTAAC
Found at i:41960 original size:28 final size:28
Alignment explanation
Indices: 41900--41982 Score: 78
Period size: 28 Copynumber: 3.0 Consensus size: 28
41890 CATGTATAAG
* *
41900 ATTTAGGGTTTAAGATTTTAAGTTTAAC
1 ATTTAAGGTTTAGGATTTTAAGTTTAAC
* * **
41928 ATTTATGGTTTAGGGTTTTAAGTTTAGG
1 ATTTAAGGTTTAGGATTTTAAGTTTAAC
* *
41956 GTTTAAGATTTAGGA-TTTAAGGTTTAA
1 ATTTAAGGTTTAGGATTTTAA-GTTTAA
41983 TGTTATGAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
27 5 0.11
28 39 0.89
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.47
Consensus pattern (28 bp):
ATTTAAGGTTTAGGATTTTAAGTTTAAC
Found at i:44266 original size:16 final size:16
Alignment explanation
Indices: 44245--44294 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
44235 TGATGGGGAT
44245 ATTATTTTGATAATTA
1 ATTATTTTGATAATTA
*
44261 ATTATTTT-TTATATT-
1 ATTATTTTGATA-ATTA
*
44276 A-TATTTTGGTAATTA
1 ATTATTTTGATAATTA
44291 ATTA
1 ATTA
44295 GTTAGATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 9 0.32
15 6 0.21
16 13 0.46
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (16 bp):
ATTATTTTGATAATTA
Found at i:45015 original size:20 final size:21
Alignment explanation
Indices: 44990--45032 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
44980 TACTTACTAC
44990 TACTAAC-AACAAAATAAAAT
1 TACTAACTAACAAAATAAAAT
*
45010 TACTAACTAACAAAATTAAAT
1 TACTAACTAACAAAATAAAAT
45031 TA
1 TA
45033 AAATAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (21 bp):
TACTAACTAACAAAATAAAAT
Found at i:45421 original size:23 final size:21
Alignment explanation
Indices: 45395--45447 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
45385 CTCCTTCTCC
45395 TTCTTCCTTCTTTCTTTATTTAT
1 TTCTTCCTTCTTT-TTT-TTTAT
* *
45418 TTCTTTC-TCTTTTTTTTTCT
1 TTCTTCCTTCTTTTTTTTTAT
*
45438 TTTTTCCTTC
1 TTCTTCCTTC
45448 AAATTTCGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 9 0.36
21 5 0.20
22 5 0.20
23 6 0.24
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.74
Consensus pattern (21 bp):
TTCTTCCTTCTTTTTTTTTAT
Found at i:45423 original size:16 final size:16
Alignment explanation
Indices: 45402--45439 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
45392 TCCTTCTTCC
45402 TTCTTTCT-TTATTTAT
1 TTCTTTCTCTT-TTTAT
*
45418 TTCTTTCTCTTTTTTT
1 TTCTTTCTCTTTTTAT
45434 TTCTTT
1 TTCTTT
45440 TTTCCTTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 18 0.90
17 2 0.10
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (16 bp):
TTCTTTCTCTTTTTAT
Found at i:53995 original size:19 final size:20
Alignment explanation
Indices: 53969--54012 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
53959 GATGTTAAAA
53969 TCAATAAAATT-TGTATTTAT
1 TCAATAAAATTGTGT-TTTAT
53989 T-AAT-AAATTGTGTTTTAT
1 TCAATAAAATTGTGTTTTAT
54007 TCAATA
1 TCAATA
54013 GGGGTAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
18 11 0.52
19 9 0.43
20 1 0.05
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.50
Consensus pattern (20 bp):
TCAATAAAATTGTGTTTTAT
Found at i:59039 original size:22 final size:24
Alignment explanation
Indices: 58993--59039 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
58983 AAAATGAGAA
*
58993 TTTATAATTTAATTTAAATTCTTT
1 TTTATAATTTAATATAAATTCTTT
*
59017 TTTAT-ATTTAA-ATAAATTGTTT
1 TTTATAATTTAATATAAATTCTTT
59039 T
1 T
59040 CTTTTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 10 0.48
23 6 0.29
24 5 0.24
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (24 bp):
TTTATAATTTAATATAAATTCTTT
Found at i:62854 original size:18 final size:18
Alignment explanation
Indices: 62827--62861 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
62817 TGTTTAGAAT
*
62827 TGTTTCTAGCTTCAAAAG
1 TGTTTCTAGCTCCAAAAG
*
62845 TGTTTTTAGCTCCAAAA
1 TGTTTCTAGCTCCAAAA
62862 ATACTTTGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (18 bp):
TGTTTCTAGCTCCAAAAG
Found at i:63287 original size:19 final size:19
Alignment explanation
Indices: 63265--63309 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
63255 TTATATTAAG
63265 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
63284 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
63303 ATTTAAT
1 ATTTAAT
63310 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:64105 original size:22 final size:21
Alignment explanation
Indices: 64080--64126 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
64070 TTTTTATTTC
*
64080 TTTTAATTATATTTTCTTTTAT
1 TTTTAATTAT-GTTTCTTTTAT
*
64102 TTTTAATTCTGTTTCTTTTAT
1 TTTTAATTATGTTTCTTTTAT
64123 TTTT
1 TTTT
64127 CCTCAAATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTTAATTATGTTTCTTTTAT
Found at i:83533 original size:3 final size:3
Alignment explanation
Indices: 83525--83567 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
83515 ATTAAATGGT
*
83525 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTA -AA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
83568 GAATGATAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 1 0.03
3 36 0.97
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:85681 original size:21 final size:22
Alignment explanation
Indices: 85631--85682 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
85621 AAAATTATAA
* *
85631 ATAGTTTTAATAAAATAAATTT
1 ATAGTTTAAATAAAAAAAATTT
*
85653 ATA-ATTAAATAAAAAAAATTT
1 ATAGTTTAAATAAAAAAAATTT
85674 A-AGTTTAAA
1 ATAGTTTAAA
85683 CTTTTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 1 0.04
21 21 0.84
22 3 0.12
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
ATAGTTTAAATAAAAAAAATTT
Found at i:92489 original size:46 final size:46
Alignment explanation
Indices: 92436--92530 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
92426 TTAGGGATGA
92436 TTAATGTGCAATTTTCTCTTAAATTGAATTTTAGTAGATTTATTTC
1 TTAATGTGCAATTTTCTCTTAAATTGAATTTTAGTAGATTTATTTC
*
92482 TTAATGTGCAGTTTTCTCTTAAATTGAATTTTAGTAGATTTATTTC
1 TTAATGTGCAATTTTCTCTTAAATTGAATTTTAGTAGATTTATTTC
92528 TTA
1 TTA
92531 CATTGTGAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.27, C:0.08, G:0.12, T:0.53
Consensus pattern (46 bp):
TTAATGTGCAATTTTCTCTTAAATTGAATTTTAGTAGATTTATTTC
Found at i:96230 original size:3 final size:3
Alignment explanation
Indices: 96222--96268 Score: 76
Period size: 3 Copynumber: 15.0 Consensus size: 3
96212 TTGCATTCCT
96222 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TGTCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-T-A TTA TTA
96269 AACTGCTAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
3 38 0.90
4 2 0.05
5 2 0.05
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:96962 original size:12 final size:12
Alignment explanation
Indices: 96947--96971 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
96937 TGCACTAGAC
96947 CTTTCAAATAAT
1 CTTTCAAATAAT
96959 CTTTCAAATAAT
1 CTTTCAAATAAT
96971 C
1 C
96972 GTGATTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (12 bp):
CTTTCAAATAAT
Found at i:98931 original size:23 final size:19
Alignment explanation
Indices: 98906--98945 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
98896 TTCGTGTCCT
98906 TGTTTGTGCTTGACCCACA
1 TGTTTGTGCTTGACCCACA
98925 TGTTTGTGCTTGACCCACA
1 TGTTTGTGCTTGACCCACA
98944 TG
1 TG
98946 CCAGTCTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.38
Consensus pattern (19 bp):
TGTTTGTGCTTGACCCACA
Found at i:116843 original size:24 final size:24
Alignment explanation
Indices: 116810--116857 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
116800 CATGCTATTA
*
116810 AGACTTTGATGTGTAATGACATTG
1 AGACTGTGATGTGTAATGACATTG
*
116834 AGACTGTGATGTGTTATGACATTG
1 AGACTGTGATGTGTAATGACATTG
116858 GGTTTGGCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.08, G:0.27, T:0.38
Consensus pattern (24 bp):
AGACTGTGATGTGTAATGACATTG
Found at i:123033 original size:21 final size:21
Alignment explanation
Indices: 123009--123048 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
122999 GTAAATTATT
*
123009 AAAATAAGAAACTAAAATGAG
1 AAAACAAGAAACTAAAATGAG
*
123030 AAAACAAGAACCTAAAATG
1 AAAACAAGAAACTAAAATG
123049 TTATCAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.10, G:0.12, T:0.12
Consensus pattern (21 bp):
AAAACAAGAAACTAAAATGAG
Found at i:130833 original size:12 final size:12
Alignment explanation
Indices: 130816--130840 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
130806 TTTGAAATAT
130816 CCCCCGCCCCCC
1 CCCCCGCCCCCC
130828 CCCCCGCCCCCC
1 CCCCCGCCCCCC
130840 C
1 C
130841 AAAAAAAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.92, G:0.08, T:0.00
Consensus pattern (12 bp):
CCCCCGCCCCCC
Found at i:146611 original size:1 final size:1
Alignment explanation
Indices: 146607--146631 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
146597 TTACTTAAAC
146607 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
146632 AGTAAAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:148638 original size:52 final size:51
Alignment explanation
Indices: 148581--148738 Score: 141
Period size: 52 Copynumber: 3.1 Consensus size: 51
148571 AAGATTAACT
148581 TTTAATTGAAGAAATGGATGTCATTTTAACAATAAAAAAGACCACTTTACAC
1 TTTAATTGAAGAAATGGATGTCATTTTAACAATAAAAAAGACCA-TTTACAC
** * * ** * * *
148633 TTTAATTTGATCAACGTGTACCTCATTCTAGC-AT-ACAAAG---A-TTA-AC
1 TTTAA-TTGAAGAA-ATGGATGTCATTTTAACAATAAAAAAGACCATTTACAC
148679 TTTTAATTGAAGAAATGGATGTCATTTTAACAATAAAAAAGACCAGTTTACAC
1 -TTTAATTGAAGAAATGGATGTCATTTTAACAATAAAAAAGACCA-TTTACAC
148732 TTTAATT
1 TTTAATT
148739 TAATGCATTT
Statistics
Matches: 77, Mismatches: 18, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
45 11 0.14
46 10 0.13
47 13 0.17
49 1 0.01
50 1 0.01
52 20 0.26
53 10 0.13
54 11 0.14
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (51 bp):
TTTAATTGAAGAAATGGATGTCATTTTAACAATAAAAAAGACCATTTACAC
Found at i:148647 original size:99 final size:99
Alignment explanation
Indices: 148539--148739 Score: 393
Period size: 99 Copynumber: 2.0 Consensus size: 99
148529 TCTTTATACG
148539 TTTGATCAACGTGTACCTCATTCTAGCATACAAAGATTAACTTTTAATTGAAGAAATGGATGTCA
1 TTTGATCAACGTGTACCTCATTCTAGCATACAAAGATTAACTTTTAATTGAAGAAATGGATGTCA
148604 TTTTAACAATAAAAAAGACCACTTTACACTTTAA
66 TTTTAACAATAAAAAAGACCACTTTACACTTTAA
148638 TTTGATCAACGTGTACCTCATTCTAGCATACAAAGATTAACTTTTAATTGAAGAAATGGATGTCA
1 TTTGATCAACGTGTACCTCATTCTAGCATACAAAGATTAACTTTTAATTGAAGAAATGGATGTCA
*
148703 TTTTAACAATAAAAAAGACCAGTTTACACTTTAA
66 TTTTAACAATAAAAAAGACCACTTTACACTTTAA
148737 TTT
1 TTT
148740 AATGCATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 101 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.34
Consensus pattern (99 bp):
TTTGATCAACGTGTACCTCATTCTAGCATACAAAGATTAACTTTTAATTGAAGAAATGGATGTCA
TTTTAACAATAAAAAAGACCACTTTACACTTTAA
Found at i:148720 original size:47 final size:47
Alignment explanation
Indices: 148570--148720 Score: 128
Period size: 47 Copynumber: 3.1 Consensus size: 47
148560 TCTAGCATAC
148570 AAAGATTAACTTTTAATTGAAGAAATGGATGTCATTTTAACAATAAA
1 AAAGATTAACTTTTAATTGAAGAAATGGATGTCATTTTAACAATAAA
** * * ** * * *
148617 AAAGACCACTTTACAC-TTTAATTTGATCAACGTGTACCTCATTCTAGC-AT-AC
1 AAAG---A--TTA-ACTTTTAA-TTGAAGAA-ATGGATGTCATTTTAACAATAAA
148669 AAAGATTAACTTTTAATTGAAGAAATGGATGTCATTTTAACAATAAA
1 AAAGATTAACTTTTAATTGAAGAAATGGATGTCATTTTAACAATAAA
148716 AAAGA
1 AAAGA
148721 CCAGTTTACA
Statistics
Matches: 75, Mismatches: 18, Indels: 22
0.65 0.16 0.19
Matches are distributed among these distances:
45 11 0.15
46 10 0.13
47 18 0.24
49 1 0.01
50 1 0.01
52 13 0.17
53 10 0.13
54 11 0.15
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (47 bp):
AAAGATTAACTTTTAATTGAAGAAATGGATGTCATTTTAACAATAAA
Found at i:161969 original size:27 final size:27
Alignment explanation
Indices: 161937--161991 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
161927 ACGTATATAA
161937 ATTAATTTTAAATAATAAAAATAAATG
1 ATTAATTTTAAATAATAAAAATAAATG
*
161964 ATTAATTTTAAATAATAAAAATGAATG
1 ATTAATTTTAAATAATAAAAATAAATG
161991 A
1 A
161992 AATTTTTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.36
Consensus pattern (27 bp):
ATTAATTTTAAATAATAAAAATAAATG
Found at i:173483 original size:32 final size:31
Alignment explanation
Indices: 173447--173509 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
173437 CACCATTTAC
*
173447 TCAAA-AAAATAAATAATTTTTTTTATATTAAA
1 TCAAATAAAA-AAATAA-TTATTTTATATTAAA
* *
173479 TCAAATAACAAATTAATTATTTTATATTAAA
1 TCAAATAAAAAAATAATTATTTTATATTAAA
173510 ATTTTCATCC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 14 0.52
32 10 0.37
33 3 0.11
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (31 bp):
TCAAATAAAAAAATAATTATTTTATATTAAA
Found at i:174620 original size:16 final size:16
Alignment explanation
Indices: 174601--174634 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
174591 ACAAAAAAAT
*
174601 AAAAGTTTAAAAATTA
1 AAAAGTTGAAAAATTA
*
174617 AAAAGTTGAAAATTTA
1 AAAAGTTGAAAAATTA
174633 AA
1 AA
174635 TGAAGTGCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (16 bp):
AAAAGTTGAAAAATTA
Found at i:177526 original size:12 final size:12
Alignment explanation
Indices: 177509--177533 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
177499 TGTGGTACCT
177509 CTTCAATATCTA
1 CTTCAATATCTA
177521 CTTCAATATCTA
1 CTTCAATATCTA
177533 C
1 C
177534 AACAAACAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40
Consensus pattern (12 bp):
CTTCAATATCTA
Found at i:191024 original size:3 final size:3
Alignment explanation
Indices: 191016--191043 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
191006 TGCTATTCAC
191016 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
191044 CAAGTCAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:221059 original size:20 final size:19
Alignment explanation
Indices: 221023--221062 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
221013 TATTTTAAAA
* *
221023 ATTAAAAATCATTAAAATT
1 ATTAAAAAGCATAAAAATT
221042 ATTACAAAAGCATAAAAATT
1 ATTA-AAAAGCATAAAAATT
221062 A
1 A
221063 AAAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.60, C:0.07, G:0.03, T:0.30
Consensus pattern (19 bp):
ATTAAAAAGCATAAAAATT
Found at i:221392 original size:2 final size:2
Alignment explanation
Indices: 221387--221432 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
221377 TTTTTAACAA
221387 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
221429 AT AT
1 AT AT
221433 GGTAATATAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:223992 original size:4 final size:4
Alignment explanation
Indices: 223983--224010 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
223973 GCTAATAAAT
223983 TTCC TTCC TTCC TTCC TTCC TTCC TTCC
1 TTCC TTCC TTCC TTCC TTCC TTCC TTCC
224011 CACTGCTCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (4 bp):
TTCC
Found at i:234398 original size:6 final size:6
Alignment explanation
Indices: 234387--234412 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
234377 CACACACTTG
234387 TCATCT TCATCT TCATCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TC
234413 TTCCCTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.35, G:0.00, T:0.50
Consensus pattern (6 bp):
TCATCT
Found at i:260352 original size:12 final size:12
Alignment explanation
Indices: 260337--260371 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
260327 GGTGGTGGTG
260337 ATGGTGATGATC
1 ATGGTGATGATC
*
260349 ATGGTGGTGATC
1 ATGGTGATGATC
*
260361 ATGATGATGAT
1 ATGGTGATGAT
260372 AATGATGGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.06, G:0.34, T:0.34
Consensus pattern (12 bp):
ATGGTGATGATC
Found at i:260353 original size:21 final size:21
Alignment explanation
Indices: 260329--260368 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
260319 AAGATGACGG
**
260329 TGGTGGTGATGGTGATGATCA
1 TGGTGGTGATCATGATGATCA
260350 TGGTGGTGATCATGATGAT
1 TGGTGGTGATCATGATGAT
260369 GATAATGATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.05, G:0.40, T:0.35
Consensus pattern (21 bp):
TGGTGGTGATCATGATGATCA
Found at i:268476 original size:61 final size:61
Alignment explanation
Indices: 268386--268503 Score: 141
Period size: 61 Copynumber: 1.9 Consensus size: 61
268376 ATTTAAGTGT
* ** ** *
268386 CTAATTGAAATTTTAAAAACTTTTCAAAGGTTTAA-TAATAATTTTCAAAAATTTTGGAGGC
1 CTAATTAAAATTTTAAAAAAATTTCAAAGGTACAACTAA-AATTTTCAAAAACTTTGGAGGC
*
268447 CTAATTAAAATTTTCAAAAAAATTT-AAAGGTACAACTAAAATTTTTAAAAACTTTGG
1 CTAATTAAAATTTT-AAAAAAATTTCAAAGGTACAACTAAAATTTTCAAAAACTTTGG
268504 GGACCAAGGC
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
61 37 0.77
62 11 0.23
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.37
Consensus pattern (61 bp):
CTAATTAAAATTTTAAAAAAATTTCAAAGGTACAACTAAAATTTTCAAAAACTTTGGAGGC
Found at i:269325 original size:59 final size:60
Alignment explanation
Indices: 269190--269313 Score: 162
Period size: 59 Copynumber: 2.1 Consensus size: 60
269180 TATCAGGGAC
* * * * *
269190 TAACTT-AGAAAAAAAAAAGTTTAAGCCACCATGTGGAAACAATTGCCTAGTTCAAGGGT
1 TAACTTGACAAAAAAAAAAGTTCAAGCCACAATGTGGAAACAATTGCCAAGTTCAAGGAT
* * *
269249 TAACTTGACAAAAAAAAAA-TTCAAGCCTCAATGTGGCAACAATTGTCAAGTTCAAGGAT
1 TAACTTGACAAAAAAAAAAGTTCAAGCCACAATGTGGAAACAATTGCCAAGTTCAAGGAT
269308 TAACTT
1 TAACTT
269314 AAACCAAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
59 45 0.80
60 11 0.20
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (60 bp):
TAACTTGACAAAAAAAAAAGTTCAAGCCACAATGTGGAAACAATTGCCAAGTTCAAGGAT
Found at i:269340 original size:59 final size:59
Alignment explanation
Indices: 269190--269342 Score: 143
Period size: 59 Copynumber: 2.6 Consensus size: 59
269180 TATCAGGGAC
* ** * *
269190 TAACTTAGA-AAAAAAAAAGTTTAAGCCACC-ATGTGGAAACAATTGCCTAGTTCAAGGGT
1 TAACTT-GACAAAAAAAAAATACAAGCC-CCAATGTGGAAACAATTGCCAAGTTCAAGGAT
* * * *
269249 TAACTTGACAAAAAAAAAATTCAAGCCTCAATGTGGCAACAATTGTCAAGTTCAAGGAT
1 TAACTTGACAAAAAAAAAATACAAGCCCCAATGTGGAAACAATTGCCAAGTTCAAGGAT
* *
269308 TAACTT-A-AACCAAAAAAAGTACAGGCCCCAATGTG
1 TAACTTGACAA--AAAAAAAATACAAGCCCCAATGTG
269343 AGGGTAGTTG
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
57 2 0.03
58 4 0.05
59 73 0.92
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.22
Consensus pattern (59 bp):
TAACTTGACAAAAAAAAAATACAAGCCCCAATGTGGAAACAATTGCCAAGTTCAAGGAT
Found at i:278177 original size:11 final size:10
Alignment explanation
Indices: 278156--278215 Score: 57
Period size: 10 Copynumber: 5.4 Consensus size: 10
278146 GTTGTTGTTG
278156 TTTTTATAAT
1 TTTTTATAAT
278166 TTTTTATGAAT
1 TTTTTAT-AAT
278177 TTTTTATATTATT
1 TTTTTATA--A-T
*
278190 TTTTTGAATACT
1 TTTTT--ATAAT
278202 TTTTTATAAT
1 TTTTTATAAT
278212 TTTT
1 TTTT
278216 AAATTATTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
10 16 0.38
11 10 0.24
12 7 0.17
13 6 0.14
15 3 0.07
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:278204 original size:23 final size:22
Alignment explanation
Indices: 278156--278215 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 22
278146 GTTGTTGTTG
278156 TTTTTATAATTTTTTATGAAT-
1 TTTTTATAATTTTTTATGAATC
278177 TTTTTATATTATTTTTT-TGAATAC
1 TTTTTATA--ATTTTTTATGAAT-C
278201 TTTTTTATAATTTTT
1 -TTTTTATAATTTTT
278216 AAATTATTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
21 8 0.24
22 5 0.15
23 13 0.38
25 8 0.24
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (22 bp):
TTTTTATAATTTTTTATGAATC
Found at i:284587 original size:15 final size:14
Alignment explanation
Indices: 284562--284599 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
284552 CTAGAGATGA
*
284562 AAACAGAGAAGTAG
1 AAACAGAGAAGAAG
284576 AAACAGATGAAGAAG
1 AAACAGA-GAAGAAG
284591 AAACAGAGA
1 AAACAGAGA
284600 GTGAACGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.61, C:0.08, G:0.26, T:0.05
Consensus pattern (14 bp):
AAACAGAGAAGAAG
Found at i:285663 original size:24 final size:25
Alignment explanation
Indices: 285618--285673 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
285608 TGTATGATAG
285618 ATTAAAAATTAAATTAAATTTT-TT
1 ATTAAAAATTAAATTAAATTTTATT
** * *
285642 ATTAAAAATTTTATTTATTTTTATT
1 ATTAAAAATTAAATTAAATTTTATT
285667 ATTAAAA
1 ATTAAAA
285674 TTCAGTTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 18 0.67
25 9 0.33
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
ATTAAAAATTAAATTAAATTTTATT
Found at i:304944 original size:9 final size:9
Alignment explanation
Indices: 304932--304972 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
304922 TTATATTTAG
304932 AAAAATAAT
1 AAAAATAAT
304941 AAAAATAAT
1 AAAAATAAT
304950 AAAAATTAAT
1 AAAAA-TAAT
* *
304960 GAAAATATT
1 AAAAATAAT
304969 AAAA
1 AAAA
304973 GGAAGGTGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (9 bp):
AAAAATAAT
Found at i:304959 original size:19 final size:18
Alignment explanation
Indices: 304932--304972 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
304922 TTATATTTAG
304932 AAAAATAATAAAAATAAT
1 AAAAATAATAAAAATAAT
* *
304950 AAAAATTAATGAAAATATT
1 AAAAA-TAATAAAAATAAT
304969 AAAA
1 AAAA
304973 GGAAGGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (18 bp):
AAAAATAATAAAAATAAT
Found at i:307925 original size:57 final size:56
Alignment explanation
Indices: 307837--308004 Score: 193
Period size: 57 Copynumber: 3.0 Consensus size: 56
307827 GACATAATAC
* * * *
307837 CTTAAGCCGAGGGGACTGACGAACAATTGGTGATAA-AAGATCTGGTTTTGCTACTTT
1 CTTAAGCCGAGGGGACAGACGAACAACTGGTGATAAGAAG-TCTGATTTGGCTAC-TT
* *
307894 CTTAAGCCGAGGGGACAGATGAACAACTGGTGATAAGATGTCTGATTTGGCTACTT
1 CTTAAGCCGAGGGGACAGACGAACAACTGGTGATAAGAAGTCTGATTTGGCTACTT
* *
307950 CTTTAAGCCGAGTGGACCGACG-AC--CTGGTGAT-AGAATGTCTGATTTGGCTACTT
1 C-TTAAGCCGAGGGGACAGACGAACAACTGGTGATAAGAA-GTCTGATTTGGCTACTT
308004 C
1 C
308005 CTTGGGATGT
Statistics
Matches: 98, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
53 3 0.03
54 26 0.27
56 5 0.05
57 62 0.63
58 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (56 bp):
CTTAAGCCGAGGGGACAGACGAACAACTGGTGATAAGAAGTCTGATTTGGCTACTT
Found at i:310823 original size:13 final size:13
Alignment explanation
Indices: 310807--310831 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
310797 TTTCTTTTTT
310807 TTTTTACTTTTAG
1 TTTTTACTTTTAG
310820 TTTTTACTTTTA
1 TTTTTACTTTTA
310832 AAAATTATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.04, T:0.72
Consensus pattern (13 bp):
TTTTTACTTTTAG
Found at i:310974 original size:22 final size:20
Alignment explanation
Indices: 310949--311051 Score: 63
Period size: 22 Copynumber: 5.0 Consensus size: 20
310939 GCACCTAATT
310949 ATATAACATCAATAATTTAAAA
1 ATATAA-AT-AATAATTTAAAA
* *
310971 ATATAATTAAAATATTTTAAAA
1 ATATAA--ATAATAATTTAAAA
*
310993 AT-TGAA-AATAATTTAAAA
1 ATATAAATAATAATTTAAAA
*
311011 ATATAATTAA-AATGTTTTAAAA
1 ATATAAATAATAA---TTTAAAA
311033 AT-TGAAA-AATAATTTAAAA
1 ATAT-AAATAATAATTTAAAA
311052 TAAATATCAT
Statistics
Matches: 65, Mismatches: 8, Indels: 19
0.71 0.09 0.21
Matches are distributed among these distances:
18 13 0.20
19 12 0.18
20 2 0.03
21 5 0.08
22 32 0.49
23 1 0.02
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (20 bp):
ATATAAATAATAATTTAAAA
Found at i:311004 original size:40 final size:41
Alignment explanation
Indices: 310959--311051 Score: 170
Period size: 40 Copynumber: 2.3 Consensus size: 41
310949 ATATAACATC
310959 AATAATTTAAAAATATAATTAAAATATTTTAAAAATTG-AA
1 AATAATTTAAAAATATAATTAAAATATTTTAAAAATTGAAA
*
310999 AATAATTTAAAAATATAATTAAAATGTTTTAAAAATTGAAA
1 AATAATTTAAAAATATAATTAAAATATTTTAAAAATTGAAA
311040 AATAATTTAAAA
1 AATAATTTAAAA
311052 TAAATATCAT
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 37 0.73
41 14 0.27
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (41 bp):
AATAATTTAAAAATATAATTAAAATATTTTAAAAATTGAAA
Found at i:311010 original size:17 final size:17
Alignment explanation
Indices: 310975--311012 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
310965 TTAAAAATAT
*
310975 AATTAAAATATTTTAAA
1 AATTAAAATAATTTAAA
310992 AATTGAAAATAATTTAAA
1 AATT-AAAATAATTTAAA
311010 AAT
1 AAT
311013 ATAATTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (17 bp):
AATTAAAATAATTTAAA
Found at i:311550 original size:26 final size:27
Alignment explanation
Indices: 311518--311582 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
311508 TATATGAACC
311518 AGTTTTTAACAGT-AAAAAAAAGATGA
1 AGTTTTTAACAGTAAAAAAAAAGATGA
*
311544 AGTTTTTAATAGTAAAAAAAAAGATGA
1 AGTTTTTAACAGTAAAAAAAAAGATGA
311571 AGTTTTTAACAG
1 AGTTTTTAACAG
311583 AAATAATCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 12 0.33
27 24 0.67
ACGTcount: A:0.51, C:0.03, G:0.15, T:0.31
Consensus pattern (27 bp):
AGTTTTTAACAGTAAAAAAAAAGATGA
Found at i:318898 original size:17 final size:19
Alignment explanation
Indices: 318878--318914 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
318868 TTATTTATTG
318878 TATAT-TAT-TTTTAAATA
1 TATATCTATATTTTAAATA
*
318895 TATATCTGTATTTTAAATA
1 TATATCTATATTTTAAATA
318914 T
1 T
318915 GTGATTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 5 0.29
18 2 0.12
19 10 0.59
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (19 bp):
TATATCTATATTTTAAATA
Found at i:323464 original size:142 final size:142
Alignment explanation
Indices: 323199--323481 Score: 307
Period size: 142 Copynumber: 2.0 Consensus size: 142
323189 TTTAAAATCA
*** * * * * **
323199 ATGTGATTGATGAAATAATCTTTCAGTTACACGTAGCGTGCTTTATTTTGATTTAGAAAGATCGG
1 ATGTGATTGATGAAATAATCAGACAGTTACACGTAGCGTGCCTTATTCTGATGTACAAAGATCAA
* * * ** * ** * *
323264 TTTTTAATAGTAGAAATAGATAAAATTTTAACAGAATGATCGGTTTGCTTTTTGATTTAACGTAT
66 TTTTTAATAGCAAAAATAGATAAAATTTTAACAGAATAATCAATTTGCTTCTAAATTTAACATAC
323329 AAAAACTAATTG
131 AAAAACTAATTG
* * * *
323341 ATGTGGTTGATGAAATAATCAGACAGTTATATGTGGCGTGCCTTATTCTGATGTACAAAGATCAA
1 ATGTGATTGATGAAATAATCAGACAGTTACACGTAGCGTGCCTTATTCTGATGTACAAAGATCAA
* * * *
323406 TTTTTAATAGCAAAAATTGATGAAATTTTTAACAGAATAATTAATTTGC-TCTAAATTTAATATA
66 TTTTTAATAGCAAAAATAGAT-AAAATTTTAACAGAATAATCAATTTGCTTCTAAATTTAACATA
323470 CAAAAACTAATT
130 CAAAAACTAATT
323482 TACCATTATT
Statistics
Matches: 113, Mismatches: 27, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
142 91 0.81
143 22 0.19
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (142 bp):
ATGTGATTGATGAAATAATCAGACAGTTACACGTAGCGTGCCTTATTCTGATGTACAAAGATCAA
TTTTTAATAGCAAAAATAGATAAAATTTTAACAGAATAATCAATTTGCTTCTAAATTTAACATAC
AAAAACTAATTG
Found at i:342179 original size:16 final size:17
Alignment explanation
Indices: 342155--342187 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
342145 TTTAATTAAT
*
342155 TTTTTAAAAT-TAAAAA
1 TTTTAAAAATATAAAAA
342171 TTTTAAAAATATAAAAA
1 TTTTAAAAATATAAAAA
342188 ATATTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTTTAAAAATATAAAAA
Found at i:359962 original size:17 final size:17
Alignment explanation
Indices: 359937--359974 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
359927 TATACTCATC
*
359937 AAATTCAAATTAGTATA
1 AAATGCAAATTAGTATA
*
359954 AAATGCAAATTAGTTTA
1 AAATGCAAATTAGTATA
359971 AAAT
1 AAAT
359975 TTCAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.08, T:0.34
Consensus pattern (17 bp):
AAATGCAAATTAGTATA
Found at i:361235 original size:17 final size:18
Alignment explanation
Indices: 361213--361250 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
361203 TCTGTAAAAT
*
361213 AAACAT-AAATAAACCAA
1 AAACATGAAATAAAACAA
*
361230 AAACATGAATTAAAACAA
1 AAACATGAAATAAAACAA
361248 AAA
1 AAA
361251 TCAAAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.71, C:0.13, G:0.03, T:0.13
Consensus pattern (18 bp):
AAACATGAAATAAAACAA
Found at i:361248 original size:18 final size:17
Alignment explanation
Indices: 361213--361263 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
361203 TCTGTAAAAT
*
361213 AAACATAAATAAACCAA
1 AAACATAAATAAAACAA
*
361230 AAACATGAATTAAAACAA
1 AAACAT-AAATAAAACAA
*
361248 AAATCA-AAACAAAACA
1 AAA-CATAAATAAAACA
361264 TTATTGATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 14 0.50
18 12 0.43
19 2 0.07
ACGTcount: A:0.71, C:0.16, G:0.02, T:0.12
Consensus pattern (17 bp):
AAACATAAATAAAACAA
Found at i:366984 original size:27 final size:26
Alignment explanation
Indices: 366946--366998 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
366936 CTTTTAACAT
366946 AAAAAAAGGGATCAAAATTAAAAAAA
1 AAAAAAAGGGATCAAAATTAAAAAAA
*
366972 AAAAAGAAGGGATCAAAATTATAAAAA
1 AAAAA-AAGGGATCAAAATTAAAAAAA
366999 CATTCTCCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.70, C:0.04, G:0.13, T:0.13
Consensus pattern (26 bp):
AAAAAAAGGGATCAAAATTAAAAAAA
Found at i:369330 original size:20 final size:20
Alignment explanation
Indices: 369305--369345 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
369295 AAAAATAGTA
369305 CATAAACTATCAATTTTGTC
1 CATAAACTATCAATTTTGTC
369325 CATAAACTATCAATTTTGTC
1 CATAAACTATCAATTTTGTC
369345 C
1 C
369346 CAAAAGTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (20 bp):
CATAAACTATCAATTTTGTC
Found at i:375778 original size:28 final size:26
Alignment explanation
Indices: 375723--375780 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 26
375713 CGAAATTTAG
* **
375723 TTTTTATATTTAAAATTTAATCTTAT
1 TTTTTAGATTTAAAATTTAATCCAAT
375749 TTTTTAGATTTCAAAATTTTAATCCAAT
1 TTTTTAGATTT-AAAA-TTTAATCCAAT
375777 TTTT
1 TTTT
375781 AATATTATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 10 0.37
27 4 0.15
28 13 0.48
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.59
Consensus pattern (26 bp):
TTTTTAGATTTAAAATTTAATCCAAT
Found at i:375779 original size:27 final size:26
Alignment explanation
Indices: 375723--375781 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
375713 CGAAATTTAG
* * *
375723 TTTTTATATTTAAAATTTAATCTTAT
1 TTTTTAGATTTAAAATTTAATCTCAA
375749 TTTTTAGATTTCAAAATTTTAATC-CAA
1 TTTTTAGATTT-AAAA-TTTAATCTCAA
375776 TTTTTA
1 TTTTTA
375782 ATATTATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.36
27 11 0.39
28 7 0.25
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.58
Consensus pattern (26 bp):
TTTTTAGATTTAAAATTTAATCTCAA
Found at i:376528 original size:22 final size:21
Alignment explanation
Indices: 376491--376541 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
376481 ACTTAATATA
376491 AAAATATATAATTATTA-TTT
1 AAAATATATAATTATTATTTT
*
376511 AAAATATATATTTATATTATTTT
1 AAAATATATA-AT-TATTATTTT
*
376534 ATAATATA
1 AAAATATA
376542 ATATATTCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 10 0.38
21 1 0.04
22 5 0.19
23 10 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AAAATATATAATTATTATTTT
Found at i:376548 original size:20 final size:19
Alignment explanation
Indices: 376496--376548 Score: 54
Period size: 23 Copynumber: 2.6 Consensus size: 19
376486 ATATAAAAAT
376496 ATATAAT-TATTATTTAAA
1 ATATAATATATTATTTAAA
*
376514 ATATATATTTATATTATTTTATA
1 ATATA-A--TATATTA-TTTAAA
376537 ATATAATATATT
1 ATATAATATATT
376549 CGGGTAGGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
18 5 0.17
19 1 0.03
20 6 0.21
21 1 0.03
22 6 0.21
23 10 0.34
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATATAATATATTATTTAAA
Found at i:376950 original size:31 final size:29
Alignment explanation
Indices: 376877--376950 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 29
376867 TTTATTTTTA
376877 TTTAATATATAAAAATTAATCTATCAATTT
1 TTTAATATA-AAAAATTAATCTATCAATTT
376907 TTTAA-ATTAAAAAATATAATCTAATCTAA-TT
1 TTTAATA-TAAAAAAT-TAATCT-ATC-AATTT
*
376938 TTTAATACAAAAA
1 TTTAATATAAAAA
376951 TCTCTACAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
29 7 0.18
30 13 0.34
31 15 0.39
32 3 0.08
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (29 bp):
TTTAATATAAAAAATTAATCTATCAATTT
Found at i:378041 original size:14 final size:14
Alignment explanation
Indices: 378022--378051 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
378012 ATACTTTTTA
378022 AAAATAATTTTAAT
1 AAAATAATTTTAAT
*
378036 AAAATAATTTTCAT
1 AAAATAATTTTAAT
378050 AA
1 AA
378052 TTTCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (14 bp):
AAAATAATTTTAAT
Found at i:379155 original size:2 final size:2
Alignment explanation
Indices: 379148--379219 Score: 144
Period size: 2 Copynumber: 36.0 Consensus size: 2
379138 CCATACATAC
379148 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
379190 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
379220 GTCAATTTTG
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 70 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:390398 original size:18 final size:19
Alignment explanation
Indices: 390375--390422 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
390365 GGATATGTTC
390375 TTTCTTTTTG-ATCCCCCT
1 TTTCTTTTTGCATCCCCCT
* *
390393 TTTCTTTTTGCTATCTCCTT
1 TTTCTTTTTGC-ATCCCCCT
390413 TTTCTTTTTG
1 TTTCTTTTTG
390423 GGTTGTAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
20 16 0.62
ACGTcount: A:0.04, C:0.25, G:0.06, T:0.65
Consensus pattern (19 bp):
TTTCTTTTTGCATCCCCCT
Found at i:392520 original size:23 final size:25
Alignment explanation
Indices: 392476--392533 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
392466 AAATAGGCAG
*
392476 TAATATATTATTTTTAATAAAATAA
1 TAATATATTATTTTTAACAAAATAA
392501 TAATA-ATT-TTTTTAACAAAATAA
1 TAATATATTATTTTTAACAAAATAA
*
392524 TTAATTTATT
1 -TAATATATT
392534 CTTTGATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 14 0.48
24 7 0.24
25 8 0.28
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
TAATATATTATTTTTAACAAAATAA
Found at i:397918 original size:21 final size:21
Alignment explanation
Indices: 397893--397933 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
397883 ATTATTAAAT
* *
397893 AAAATGCTTTTAAGTTTTTTA
1 AAAATACTTTTAACTTTTTTA
*
397914 AAAATACTTTTGACTTTTTT
1 AAAATACTTTTAACTTTTTT
397934 TAGCAAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (21 bp):
AAAATACTTTTAACTTTTTTA
Found at i:398350 original size:6 final size:6
Alignment explanation
Indices: 398339--398367 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
398329 AAACCCCAGT
398339 CATAGG CATAGG CATAGG CATAGG CATAG
1 CATAGG CATAGG CATAGG CATAGG CATAG
398368 TGCTTAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.17
Consensus pattern (6 bp):
CATAGG
Found at i:398979 original size:21 final size:19
Alignment explanation
Indices: 398955--398998 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 19
398945 AAAAAGTGAG
398955 AAAATAACAGCAAAACATGAA
1 AAAATAACAGCAAAA-A-GAA
*
398976 AAAATAAGAGCAAAAAGAA
1 AAAATAACAGCAAAAAGAA
398995 AAAA
1 AAAA
398999 AAAATTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.32
20 1 0.05
21 14 0.64
ACGTcount: A:0.73, C:0.09, G:0.11, T:0.07
Consensus pattern (19 bp):
AAAATAACAGCAAAAAGAA
Found at i:399566 original size:20 final size:21
Alignment explanation
Indices: 399478--399564 Score: 59
Period size: 21 Copynumber: 4.0 Consensus size: 21
399468 ATTAAATTAA
* * * *
399478 ATAAAAAAATATAAAGAACTT
1 ATAAATAAATATTAATAATTT
*
399499 ATAAATAAATACTAATAATTT
1 ATAAATAAATATTAATAATTT
**
399520 -TATTTAAATATTAATTATAATTATT
1 ATAAATAAATATT-A--ATAA-T-TT
399545 ATAAATAAATATTAATAATT
1 ATAAATAAATATTAATAATT
399565 ATCTAGTTTA
Statistics
Matches: 50, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
20 9 0.18
21 18 0.36
22 1 0.02
23 8 0.16
24 1 0.02
25 3 0.06
26 10 0.20
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.40
Consensus pattern (21 bp):
ATAAATAAATATTAATAATTT
Found at i:401570 original size:17 final size:17
Alignment explanation
Indices: 401545--401580 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
401535 CACCTTGACT
* *
401545 AGAATTCTCTACGAACA
1 AGAACTCTCAACGAACA
401562 AGAACTCTCAACGAACA
1 AGAACTCTCAACGAACA
401579 AG
1 AG
401581 TTCTCCACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.25, G:0.14, T:0.17
Consensus pattern (17 bp):
AGAACTCTCAACGAACA
Found at i:403887 original size:228 final size:228
Alignment explanation
Indices: 403490--403938 Score: 862
Period size: 228 Copynumber: 2.0 Consensus size: 228
403480 TATTTTCTGG
403490 ACACCATAACTTATACCCTTTTACACCAACTTTAAAACCAAGAAAAACACATTTAATGGATCTTG
1 ACACCATAACTTATACCCTTTTACACCAACTTTAAAACCAAGAAAAACACATTTAATGGATCTTG
403555 GTTCCAATTTTCCATTACCAACATGAGCATAAGCAAGACACCCAAAAATCTTTATATCAGAATAA
66 GTTCCAATTTTCCATTACCAACATGAGCATAAGCAAGACACCCAAAAATCTTTATATCAGAATAA
*
403620 TCAGCAGGCTTACCATACCATATCTCTTGTGGAGTCCTTTTCTCAATAGAAATGGATGGAGATCG
131 TCAGCAGGCTTACCATACCATATCTCTTGTGGAGTCCTTTTCTCAATAGAAATGGATGGAGATCA
*
403685 GTTGATGAAAAAACATGCAGTAGAGGTTGCTTC
196 GTTGATCAAAAAACATGCAGTAGAGGTTGCTTC
403718 ACACCATAACTTATACCCTTTTACACCAACTTTAAAACCAAGAAAAACACATTTAATGGATCTTG
1 ACACCATAACTTATACCCTTTTACACCAACTTTAAAACCAAGAAAAACACATTTAATGGATCTTG
*
403783 GTTCCAATTTTCCATTATCAACATGAGCATAAGCAAGACACCCAAAAATCTTTATATCAGAATAA
66 GTTCCAATTTTCCATTACCAACATGAGCATAAGCAAGACACCCAAAAATCTTTATATCAGAATAA
*
403848 TCAGCAGGCTTACCATACCATATCTCTTGTGGAGTCCTTTTCTCAATGGAAATGGATGGAGATCA
131 TCAGCAGGCTTACCATACCATATCTCTTGTGGAGTCCTTTTCTCAATAGAAATGGATGGAGATCA
403913 GTTGATCAAAAAACATGCAGTAGAGG
196 GTTGATCAAAAAACATGCAGTAGAGG
403939 CTACTTCAGC
Statistics
Matches: 217, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
228 217 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (228 bp):
ACACCATAACTTATACCCTTTTACACCAACTTTAAAACCAAGAAAAACACATTTAATGGATCTTG
GTTCCAATTTTCCATTACCAACATGAGCATAAGCAAGACACCCAAAAATCTTTATATCAGAATAA
TCAGCAGGCTTACCATACCATATCTCTTGTGGAGTCCTTTTCTCAATAGAAATGGATGGAGATCA
GTTGATCAAAAAACATGCAGTAGAGGTTGCTTC
Found at i:406294 original size:23 final size:23
Alignment explanation
Indices: 406232--406285 Score: 83
Period size: 23 Copynumber: 2.3 Consensus size: 23
406222 CCCAATTCTA
*
406232 ACACAGTGC-TATCCAGTAAGCAC
1 ACACAGTGCAAAT-CAGTAAGCAC
406255 ACACAGTGCAAATCAGTAAGCAC
1 ACACAGTGCAAATCAGTAAGCAC
406278 ACACAGTG
1 ACACAGTG
406286 TTGAACAGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 27 0.93
24 2 0.07
ACGTcount: A:0.39, C:0.28, G:0.19, T:0.15
Consensus pattern (23 bp):
ACACAGTGCAAATCAGTAAGCAC
Found at i:414402 original size:10 final size:10
Alignment explanation
Indices: 414387--414412 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
414377 ATAACCTCAG
414387 TTATTTATTA
1 TTATTTATTA
414397 TTATTTATTA
1 TTATTTATTA
414407 TTATTT
1 TTATTT
414413 GTTGTGTCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (10 bp):
TTATTTATTA
Found at i:418116 original size:29 final size:29
Alignment explanation
Indices: 418084--418139 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
418074 TGTATTTTGT
*
418084 TTTTTATATTTAA-AAAATTAGAAAATTAA
1 TTTTTATATGTAATAAAA-TAGAAAATTAA
*
418113 TTTTTATATGTAATAAAATAGCAAATT
1 TTTTTATATGTAATAAAATAGAAAATT
418140 GATCATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (29 bp):
TTTTTATATGTAATAAAATAGAAAATTAA
Found at i:420547 original size:58 final size:58
Alignment explanation
Indices: 420478--420598 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 58
420468 AAATGAGTTA
* *
420478 TTTATGAGTGTTATTT-AGGAATAAAATTATATTTGGGTTTAAAAATATTTGGGTTTAG
1 TTTATGAGTGTT-TTTGAAGAATAAAATTATATTTGAGTTTAAAAATATTTGGGTTTAG
*
420536 TTTATGAGTGTTTTTGAAGAATGAAATTATATTTGAGTTTAAAAATATTTGGGTTTAG
1 TTTATGAGTGTTTTTGAAGAATAAAATTATATTTGAGTTTAAAAATATTTGGGTTTAG
420594 TTTAT
1 TTTAT
420599 TGATGGGTTT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
57 3 0.05
58 56 0.95
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (58 bp):
TTTATGAGTGTTTTTGAAGAATAAAATTATATTTGAGTTTAAAAATATTTGGGTTTAG
Found at i:420746 original size:9 final size:9
Alignment explanation
Indices: 420732--420758 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
420722 ATAATATAGT
420732 TTTATTCGA
1 TTTATTCGA
420741 TTTATTCGA
1 TTTATTCGA
420750 TTTATTCGA
1 TTTATTCGA
420759 ATTCGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.56
Consensus pattern (9 bp):
TTTATTCGA
Found at i:422706 original size:25 final size:25
Alignment explanation
Indices: 422676--422725 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
422666 AATGTTGTAG
*
422676 GTTAAAATTATTAAATCAAGACCAA
1 GTTAAAATCATTAAATCAAGACCAA
* *
422701 GTTAAACTCATTAAATCAAGGCCAA
1 GTTAAAATCATTAAATCAAGACCAA
422726 ATTGACAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.48, C:0.16, G:0.10, T:0.26
Consensus pattern (25 bp):
GTTAAAATCATTAAATCAAGACCAA
Found at i:425998 original size:18 final size:18
Alignment explanation
Indices: 425949--425999 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
425939 ATAAGTAAAT
*
425949 TATTAAAATAAGTTTATTA
1 TATT-AAATAATTTTATTA
*
425968 TATTAAAGT-ATTTTATTT
1 TATTAAA-TAATTTTATTA
*
425986 TTTTAAATAATTTT
1 TATTAAATAATTTT
426000 CAAATATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
17 1 0.04
18 21 0.78
19 5 0.19
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (18 bp):
TATTAAATAATTTTATTA
Found at i:433901 original size:6 final size:6
Alignment explanation
Indices: 433890--433917 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
433880 CTGATGACTC
433890 AAATAT AAATAT AAATAT AAATAT AAAT
1 AAATAT AAATAT AAATAT AAATAT AAAT
433918 GATATTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATAT
Found at i:451947 original size:3 final size:3
Alignment explanation
Indices: 451939--451986 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
451929 GATTCGGAAA
* * * *
451939 ATG ATG ATG ATG AAG AAG AAG AAG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
451987 GGTACGCTTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (3 bp):
ATG
Found at i:453840 original size:43 final size:43
Alignment explanation
Indices: 453781--453866 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
453771 ATTCGGTATT
*
453781 AAAAACAATACCCTATAAGTATGAACATTTGTGGGAATAACTA
1 AAAAACAATACCCTATAAGCATGAACATTTGTGGGAATAACTA
* *
453824 AAAAATAATACCCTATAAGCATGAACATTTGTGGGAATTACTA
1 AAAAACAATACCCTATAAGCATGAACATTTGTGGGAATAACTA
453867 GTTTTCTTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (43 bp):
AAAAACAATACCCTATAAGCATGAACATTTGTGGGAATAACTA
Found at i:461260 original size:15 final size:16
Alignment explanation
Indices: 461240--461270 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
461230 CCCCTAAAAT
461240 AATTTTTTAT-ATTTA
1 AATTTTTTATAATTTA
461255 AATTTTTTATAATTTA
1 AATTTTTTATAATTTA
461271 TAAAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
AATTTTTTATAATTTA
Found at i:463123 original size:3 final size:3
Alignment explanation
Indices: 463115--463139 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
463105 TAAATGTTGT
463115 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
463140 ACCACAGACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:465377 original size:15 final size:15
Alignment explanation
Indices: 465362--465391 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
465352 TTCTTAAAAA
465362 TAATAAACTAATAAAT
1 TAATAAA-TAATAAAT
465378 TAATAAATAATAAA
1 TAATAAATAATAAA
465392 ATTATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TAATAAATAATAAAT
Found at i:465393 original size:16 final size:17
Alignment explanation
Indices: 465356--465395 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
465346 AAAAAATTCT
*
465356 TAAAAATAATAAACTAA
1 TAAAATTAATAAACTAA
465373 T-AAATTAATAAA-TAA
1 TAAAATTAATAAACTAA
465388 TAAAATTA
1 TAAAATTA
465396 TATTTTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 4 0.19
16 16 0.76
17 1 0.05
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATTAATAAACTAA
Found at i:467632 original size:30 final size:30
Alignment explanation
Indices: 467598--467657 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
467588 ATTTTTTCAC
*
467598 TTTGAGTGACTGTTGAAAAAAAGTGAAAGG
1 TTTGAGTGACTGTTGAAAAAAAGTAAAAGG
467628 TTTGAGTGACTGTTGAAAAAAAGTAAAAGG
1 TTTGAGTGACTGTTGAAAAAAAGTAAAAGG
467658 GTGCTGCCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.42, C:0.03, G:0.28, T:0.27
Consensus pattern (30 bp):
TTTGAGTGACTGTTGAAAAAAAGTAAAAGG
Found at i:468072 original size:2 final size:2
Alignment explanation
Indices: 468067--468102 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
468057 TTAATGTGTG
468067 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
468103 AAAGATTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:468194 original size:13 final size:14
Alignment explanation
Indices: 468168--468201 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
468158 AAACAGGGGA
468168 GAAAGAAAAGAGAAG
1 GAAA-AAAAGAGAAG
468183 GAAAAAAA-AGAAG
1 GAAAAAAAGAGAAG
468196 GAAAAA
1 GAAAAA
468202 TTAGGATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 4 0.21
15 4 0.21
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
GAAAAAAAGAGAAG
Found at i:468491 original size:41 final size:39
Alignment explanation
Indices: 468445--468544 Score: 96
Period size: 38 Copynumber: 2.5 Consensus size: 39
468435 TTGACCTTGA
* *
468445 GTCGATGAGACACTGGGTGTCATTATTTTACTTCGGATAG
1 GTCGATGAGACACT-GGTGTCATCACTTTACTTCGGATAG
* ** *
468485 ATTCGATGAGGTACTGG-GT-ATCACTTTACTTCGGCTAG
1 -GTCGATGAGACACTGGTGTCATCACTTTACTTCGGATAG
*
468523 GCCGATGAGACACTAGGTGTCA
1 GTCGATGAGACACT-GGTGTCA
468545 CTTTATTGCT
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
37 10 0.22
38 18 0.39
39 4 0.09
40 3 0.07
41 11 0.24
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (39 bp):
GTCGATGAGACACTGGTGTCATCACTTTACTTCGGATAG
Found at i:469061 original size:2 final size:2
Alignment explanation
Indices: 469054--469082 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
469044 TTGGTTGTAA
469054 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
469083 TTTGATATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:490825 original size:30 final size:29
Alignment explanation
Indices: 490781--490847 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
490771 ATGAGATATT
* * *
490781 AAAATAATAAAATTTCATTTTGATTCTCATA
1 AAAAT-ATAAAATTTAATTATGACTCTC-TA
*
490812 AAAATATACAATTTAATTATGACTCTCTA
1 AAAATATAAAATTTAATTATGACTCTCTA
*
490841 GAAATAT
1 AAAATAT
490848 TTTCTGACTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 8 0.26
30 18 0.58
31 5 0.16
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.39
Consensus pattern (29 bp):
AAAATATAAAATTTAATTATGACTCTCTA
Found at i:496826 original size:19 final size:19
Alignment explanation
Indices: 496806--496842 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
496796 AATTATATAT
496806 TTTTTA-AATTTTTAAATA
1 TTTTTACAATTTTTAAATA
496824 TTTTTACAATTTTTAAATA
1 TTTTTACAATTTTTAAATA
496843 AACATACCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTTACAATTTTTAAATA
Done.