Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 105 of 135
Found at i:36070805 original size:13 final size:12
Alignment explanation
Indices: 36070769--36070803 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
36070759 ATATTTTTTG
36070769 TTTTTAATTTAA
1 TTTTTAATTTAA
36070781 TTTTTACATTTAA
1 TTTTTA-ATTTAA
*
36070794 TTTTTTATTT
1 TTTTTAATTT
36070804 TATAGGTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTTAATTTAA
Found at i:36072978 original size:6 final size:6
Alignment explanation
Indices: 36072967--36073224 Score: 174
Period size: 6 Copynumber: 41.0 Consensus size: 6
36072957 ATTTACTACA
*
36072967 TTTATT TTTATT TTCT-TT TTCATT TGTTATTTT TTTCATT TTTCATT
1 TTTATT TTTATT TT-TATT TTTATT T-TTA--TT TTT-ATT TTT-ATT
36073014 TTTCATT TTTCATT TTTAATT TTTAATTT TTTATT TTTCA-T TTTATT
1 TTT-ATT TTT-ATT TTT-ATT TTT-A-TT TTTATT TTT-ATT TTTATT
* * *
36073061 TTTCA-T TTTATT TTTCATT TTCATT TTCATT TTCATT TTT-TT TATT-TT
1 TTT-ATT TTTATT TTT-ATT TTTATT TTTATT TTTATT TTTATT T-TTATT
* * *
36073109 TTATTTT TTTATTT TTTATT TTTA-T TTTATT ATGCATTA-T TTTCTC
1 TT-TATT TTTA-TT TTTATT TTTATT TTTATT -T---TTATT TTTATT
* * *
36073155 TTTATT TTTATT TTTAGT TTTAGT TTTAGT TTTA-T TTTA-T TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
36073201 TTTATT TTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT
36073225 CCTATGGTAG
Statistics
Matches: 218, Mismatches: 11, Indels: 46
0.79 0.04 0.17
Matches are distributed among these distances:
5 23 0.11
6 123 0.56
7 56 0.26
8 8 0.04
9 5 0.02
10 3 0.01
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:36073008 original size:7 final size:7
Alignment explanation
Indices: 36072977--36073136 Score: 133
Period size: 7 Copynumber: 23.4 Consensus size: 7
36072967 TTTATTTTTA
36072977 TTTTC-T
1 TTTTCAT
36072983 TTTTCAT
1 TTTTCAT
36072990 TTGTT-ATTT
1 TT-TTCA--T
36072999 TTTTCAT
1 TTTTCAT
36073006 TTTTCAT
1 TTTTCAT
36073013 TTTTCAT
1 TTTTCAT
36073020 TTTTCAT
1 TTTTCAT
*
36073027 TTTTAAT
1 TTTTCAT
*
36073034 TTTTAAT
1 TTTTCAT
*
36073041 TTTTTAT
1 TTTTCAT
36073048 TTTTCA-
1 TTTTCAT
36073054 TTTT-AT
1 TTTTCAT
36073060 TTTTCA-
1 TTTTCAT
36073066 TTTT-AT
1 TTTTCAT
36073072 TTTTCA-
1 TTTTCAT
36073078 TTTTCA-
1 TTTTCAT
36073084 TTTTCA-
1 TTTTCAT
36073090 TTTTCATTT
1 TTTTCA--T
*
36073099 TTTTTAT
1 TTTTCAT
*
36073106 TTTTTATT
1 TTTTCA-T
*
36073114 TTTTTAT
1 TTTTCAT
*
36073121 TTTTTAT
1 TTTTCAT
36073128 TTTT-AT
1 TTTTCAT
36073134 TTT
1 TTT
36073137 ATTATGCATT
Statistics
Matches: 137, Mismatches: 4, Indels: 26
0.82 0.02 0.16
Matches are distributed among these distances:
5 2 0.01
6 44 0.32
7 71 0.52
8 11 0.08
9 9 0.07
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.77
Consensus pattern (7 bp):
TTTTCAT
Found at i:36073141 original size:8 final size:7
Alignment explanation
Indices: 36072977--36073221 Score: 107
Period size: 7 Copynumber: 34.4 Consensus size: 7
36072967 TTTATTTTTA
*
36072977 TTTTCTT
1 TTTTATT
*
36072984 TTTCATT
1 TTTTATT
*
36072991 TGTTATTT
1 TTTTA-TT
36072999 TTTTCATT
1 TTTT-ATT
*
36073007 TTTCATT
1 TTTTATT
*
36073014 TTTCATT
1 TTTTATT
*
36073021 TTTCATT
1 TTTTATT
*
36073028 TTTAATT
1 TTTTATT
*
36073035 TTTAATT
1 TTTTATT
36073042 TTTTATT
1 TTTTATT
*
36073049 TTTCATT
1 TTTTATT
*
36073056 TTATTTTT
1 TT-TTATT
36073064 CATTTTATT
1 --TTTTATT
*
36073073 TTTCA-T
1 TTTTATT
*
36073079 TTTCA-T
1 TTTTATT
*
36073085 TTTCATT
1 TTTTATT
36073092 TTCATT-TT
1 TT--TTATT
36073100 TTTTATT
1 TTTTATT
36073107 TTTTATTT
1 TTTTA-TT
36073115 TTTTATT
1 TTTTATT
36073122 TTTTA-T
1 TTTTATT
36073128 TTTTATT
1 TTTTATT
*
36073135 TTATTATG
1 TT-TTATT
**
36073143 CATTATT
1 TTTTATT
*
36073150 TTCTCTTTAT
1 TT-T-TAT-T
36073160 TTTTA-T
1 TTTTATT
*
36073166 TTTTA-G
1 TTTTATT
*
36073172 TTTTA-G
1 TTTTATT
36073178 TTTTAGTT
1 TTTTA-TT
36073186 TTATT-TT
1 TT-TTATT
36073193 ATTTTA-T
1 -TTTTATT
36073200 TTTTA-T
1 TTTTATT
36073206 TTTTA-T
1 TTTTATT
36073212 TTTTATT
1 TTTTATT
36073219 TTT
1 TTT
36073222 ATTCCTATGG
Statistics
Matches: 193, Mismatches: 24, Indels: 42
0.75 0.09 0.16
Matches are distributed among these distances:
6 54 0.28
7 89 0.46
8 34 0.18
9 11 0.06
10 5 0.03
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (7 bp):
TTTTATT
Found at i:36073203 original size:34 final size:35
Alignment explanation
Indices: 36073155--36073224 Score: 106
Period size: 34 Copynumber: 2.0 Consensus size: 35
36073145 TTATTTTCTC
36073155 TTTATTTTTATTTTTAGTTTTAGTTTTAGTTTTAT
1 TTTATTTTTATTTTTAGTTTTAGTTTTAGTTTTAT
* * *
36073190 TTTA-TTTTATTTTTATTTTTATTTTTATTTTTAT
1 TTTATTTTTATTTTTAGTTTTAGTTTTAGTTTTAT
36073224 T
1 T
36073225 CCTATGGTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.79
Consensus pattern (35 bp):
TTTATTTTTATTTTTAGTTTTAGTTTTAGTTTTAT
Found at i:36075251 original size:25 final size:23
Alignment explanation
Indices: 36075210--36075255 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
36075200 TCAATTAGGG
*
36075210 AATTATTGTTTAGATTTAATTCA
1 AATTATTATTTAGATTTAATTCA
36075233 AATTATCTATTTAGAATTTAATT
1 AATTAT-TATTTAG-ATTTAATT
36075256 TGGATCCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (23 bp):
AATTATTATTTAGATTTAATTCA
Found at i:36086469 original size:16 final size:15
Alignment explanation
Indices: 36086448--36086492 Score: 63
Period size: 16 Copynumber: 2.9 Consensus size: 15
36086438 TACATTTATG
36086448 TTTATTTCTTTTTTA
1 TTTATTTCTTTTTTA
36086463 CTTTATTTCTTCTTTTA
1 -TTTATTTCTT-TTTTA
*
36086480 TTTGTTTCTTTTT
1 TTTATTTCTTTTT
36086493 AGATTCTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 3 0.11
16 19 0.70
17 5 0.19
ACGTcount: A:0.09, C:0.11, G:0.02, T:0.78
Consensus pattern (15 bp):
TTTATTTCTTTTTTA
Found at i:36088325 original size:21 final size:20
Alignment explanation
Indices: 36088301--36088349 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
36088291 GGAATCTAAG
* *
36088301 GAGAAGAAGGAAAATGAGGAA
1 GAGAAGAAAGAAAA-GAAGAA
36088322 GAGAAGAAAGAAAAGAAGAA
1 GAGAAGAAAGAAAAGAAGAA
36088342 GAAGAAGA
1 G-AGAAGA
36088350 GAAGGAAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.02
Consensus pattern (20 bp):
GAGAAGAAAGAAAAGAAGAA
Found at i:36088799 original size:17 final size:18
Alignment explanation
Indices: 36088768--36088803 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
36088758 CATTTAGTTT
36088768 TCATTGCATTTTTATTTG
1 TCATTGCATTTTTATTTG
36088786 TCATTGCA-TTTTATTTG
1 TCATTGCATTTTTATTTG
36088803 T
1 T
36088804 TTGTACATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.17, C:0.11, G:0.11, T:0.61
Consensus pattern (18 bp):
TCATTGCATTTTTATTTG
Found at i:36095395 original size:23 final size:23
Alignment explanation
Indices: 36095363--36096083 Score: 973
Period size: 23 Copynumber: 31.0 Consensus size: 23
36095353 TAGCATATGT
* *
36095363 CAAATTACATCAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
*
36095386 CAAATCACATTAATATTTGAGCA
1 CAAATCACATTAATATTTAAGCA
36095409 CAAATCACATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
*
36095432 CAAATCATATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
*
36095455 CAAATCATATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
* *
36095478 TAAATCACATTAATATTTGAGCA
1 CAAATCACATTAATATTTAAGCA
*
36095501 CAAATCATATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
36095524 CAAATCACATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
*
36095547 CAAATCACATTATTATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
*
36095570 TAAATCACATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
*
36095593 TAAATCACATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
36095616 CAAATCACATTAATATTT-AGACA
1 CAAATCACATTAATATTTAAG-CA
* *
36095639 TAAATCACATTAATATTTGAGCA
1 CAAATCACATTAATATTTAAGCA
*
36095662 CAAATCATATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
* *
36095685 TAAATCACATTAATATTTGAGCA
1 CAAATCACATTAATATTTAAGCA
**
36095708 CAAATCATGTTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
36095731 CAAATCACATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
* *
36095754 CAAATCATATTAATATTTAA-AA
1 CAAATCACATTAATATTTAAGCA
* *
36095776 TTAAATCACATTAATATTTGAGCA
1 -CAAATCACATTAATATTTAAGCA
**
36095800 CAAATCATGTTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
36095823 CAAATCACATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
* * *
36095846 CAAATCATATT-ATCACATTAATGTTTAA
1 CAAATCACATTAAT-A-TTTAA-G---CA
*
36095874 GCACAGATCATATTAATATTTAAGCA
1 -CA-A-ATCACATTAATATTTAAGCA
36095900 CAAATCACATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
*
36095923 CAAATCATATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
* *
36095946 TAAATCACATTAATATTTGAGCA
1 CAAATCACATTAATATTTAAGCA
*
36095969 CAAATCATATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
*
36095992 TAAATCACATTAATATTTATA-CA
1 CAAATCACATTAATATTTA-AGCA
*
36096015 CAAATCATATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
* *
36096038 TAAATCATATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
*
36096061 CAAATCATATTAATATTTAAGCA
1 CAAATCACATTAATATTTAAGCA
36096084 TAGATATAAG
Statistics
Matches: 622, Mismatches: 60, Indels: 32
0.87 0.08 0.04
Matches are distributed among these distances:
22 6 0.01
23 583 0.94
24 9 0.01
25 3 0.00
26 1 0.00
28 1 0.00
29 3 0.00
30 5 0.01
31 9 0.01
32 2 0.00
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.34
Consensus pattern (23 bp):
CAAATCACATTAATATTTAAGCA
Found at i:36095864 original size:31 final size:31
Alignment explanation
Indices: 36095826--36095888 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
36095816 TTAAGCACAA
36095826 ATCACATTAATATTTAAGCACAAATCATATT
1 ATCACATTAATATTTAAGCACAAATCATATT
* *
36095857 ATCACATTAATGTTTAAGCACAGATCATATT
1 ATCACATTAATATTTAAGCACAAATCATATT
36095888 A
1 A
36095889 ATATTTAAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (31 bp):
ATCACATTAATATTTAAGCACAAATCATATT
Found at i:36097504 original size:23 final size:23
Alignment explanation
Indices: 36097478--36097535 Score: 116
Period size: 23 Copynumber: 2.5 Consensus size: 23
36097468 GAAAAAAAAT
36097478 TAACTCGATTCGTTTAACTCGAA
1 TAACTCGATTCGTTTAACTCGAA
36097501 TAACTCGATTCGTTTAACTCGAA
1 TAACTCGATTCGTTTAACTCGAA
36097524 TAACTCGATTCG
1 TAACTCGATTCG
36097536 AATAATTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (23 bp):
TAACTCGATTCGTTTAACTCGAA
Found at i:36100512 original size:48 final size:48
Alignment explanation
Indices: 36100435--36100528 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
36100425 CATCTATTTA
* *
36100435 AAGATTGAAAAGTCTTATTCTAATGAATGTCAAATAGAAGAACTGTAGT
1 AAGATTGAAAAGACTTATTCTAATCAATGTCAAATAGAAGAA-TGTAGT
36100484 AAGATTGAAAA-ACTTATTCTAATCAATGTCAAATAGAAGAATGTA
1 AAGATTGAAAAGACTTATTCTAATCAATGTCAAATAGAAGAATGTA
36100529 ATTCTATACG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
47 4 0.09
48 28 0.65
49 11 0.26
ACGTcount: A:0.46, C:0.09, G:0.16, T:0.30
Consensus pattern (48 bp):
AAGATTGAAAAGACTTATTCTAATCAATGTCAAATAGAAGAATGTAGT
Found at i:36119741 original size:23 final size:23
Alignment explanation
Indices: 36119715--36119761 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
36119705 AATCCATTTT
*
36119715 TTCTCAATTCTATTTTCATATCA
1 TTCTCAATTCTAGTTTCATATCA
* * *
36119738 TTCTCATTTTTAGTTTCATTTCA
1 TTCTCAATTCTAGTTTCATATCA
36119761 T
1 T
36119762 GATCAAATCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.21, C:0.19, G:0.02, T:0.57
Consensus pattern (23 bp):
TTCTCAATTCTAGTTTCATATCA
Found at i:36121548 original size:20 final size:20
Alignment explanation
Indices: 36121511--36121564 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
36121501 CTTTAGTGAG
*
36121511 ACTTCTACC-AGTAGAACTTC
1 ACTTCTACCGA-TACAACTTC
*
36121531 ACTTCTACCGATACAACTTT
1 ACTTCTACCGATACAACTTC
* *
36121551 AGTTCTATCGATAC
1 ACTTCTACCGATAC
36121565 CTTGAAGACT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (20 bp):
ACTTCTACCGATACAACTTC
Found at i:36124661 original size:20 final size:20
Alignment explanation
Indices: 36124624--36124662 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36124614 ATCCAATGAG
* *
36124624 ACTTCTATAGGTAGAACTTC
1 ACTTCTATAGATACAACTTC
*
36124644 ACTTCTATCGATACAACTT
1 ACTTCTATAGATACAACTT
36124663 TAGTTTTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (20 bp):
ACTTCTATAGATACAACTTC
Found at i:36124916 original size:20 final size:20
Alignment explanation
Indices: 36124863--36124918 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
36124853 CTACCCTAAG
* *
36124863 ACTTCTACTAGTAGAACTTC
1 ACTTCTACTAATACAACTTC
**
36124883 ACTTCTACCGATACAACTTC
1 ACTTCTACTAATACAACTTC
36124903 GA-TTCTACTAATACAA
1 -ACTTCTACTAATACAA
36124919 GTATGCTTCT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.34, C:0.27, G:0.07, T:0.32
Consensus pattern (20 bp):
ACTTCTACTAATACAACTTC
Found at i:36127059 original size:28 final size:28
Alignment explanation
Indices: 36127027--36127153 Score: 89
Period size: 27 Copynumber: 4.6 Consensus size: 28
36127017 TTGTGCCATG
* *
36127027 AAGGCATTCCTTTCCCA-CGATAACCACA
1 AAGGCATTCCTTT-ACAGAGATAACCACA
* *
36127055 AAGGC-TTCCATTACAGAGATAGCCACA
1 AAGGCATTCCTTTACAGAGATAACCACA
* * ** *
36127082 AAGGCATTCCTCTACAGAGGTTTGCTACA
1 AAGGCATTCCTTTACAGA-GATAACCACA
* * ** *
36127111 AAGGCTTTCCTTTACAGA-TTTGCCATA
1 AAGGCATTCCTTTACAGAGATAACCACA
36127138 AAGGCATTCCTTTACA
1 AAGGCATTCCTTTACA
36127154 TTCGCCACAA
Statistics
Matches: 82, Mismatches: 14, Indels: 7
0.80 0.14 0.07
Matches are distributed among these distances:
26 2 0.02
27 42 0.51
28 15 0.18
29 23 0.28
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (28 bp):
AAGGCATTCCTTTACAGAGATAACCACA
Found at i:36127120 original size:29 final size:27
Alignment explanation
Indices: 36127050--36127461 Score: 183
Period size: 28 Copynumber: 14.7 Consensus size: 27
36127040 CCCACGATAA
* * *
36127050 CCACAAAGGC-TTCCATTACAGAGATAG
1 CCACAAAGGCTTTCCTTTACAGA-TTTG
* *
36127077 CCACAAAGGCATTCCTCTACAGAGGTTTG
1 CCACAAAGGCTTTCCTTTACAGA--TTTG
*
36127106 CTACAAAGGCTTTCCTTTACAGATTTG
1 CCACAAAGGCTTTCCTTTACAGATTTG
* * *
36127133 CCATAAAGGCATTCCTTTAC--ATTCG
1 CCACAAAGGCTTTCCTTTACAGATTTG
*
36127158 CCACAAAGGCTTTCCTTTATAGAGGTTTG
1 CCACAAAGGCTTTCCTTTACAGA--TTTG
* * * *
36127187 CCACAAAGGCTTTCATATCCAGAGTTTT
1 CCACAAAGGCTTTCCTTTACAGA-TTTG
* * *
36127215 CCATAGAGGCTTTCCTTTAACAGAGATCT-
1 CCACAAAGGCTTTCCTTT-AC--AGATTTG
* * * * *
36127244 CCAAAAAGGATTTTCTATCTAGAGTTTTG
1 CCACAAAGGCTTTCCT-T-TACAGATTTG
* * * * **
36127273 CCATAAAGGCATTCCTTTCAAAGGTTCA
1 CCACAAAGGCTTTCCTTT-ACAGATTTG
* * * * *
36127301 CCACAAAAGCTTACCTTTTAAAGGTTTT
1 CCACAAAGGCTTTCC-TTTACAGATTTG
* *
36127329 CCACAAAGGCTTACCTTT-CAGAGGTTCG
1 CCACAAAGGCTTTCCTTTACAGA--TTTG
* * * *
36127357 CCATAAAGGCTTACCTTTTTAGAGTTTTG
1 CCACAAAGGCTTTCC--TTTACAGATTTG
* *
36127386 ACACAAAGGTTTTCCTTTAACATAGA-TTG
1 CCACAAAGGCTTTCCTTT-AC--AGATTTG
*
36127415 CCATAAAGGCTTTCC--TACCTAGAGTTTG
1 CCACAAAGGCTTTCCTTTA-C-AGA-TTTG
36127443 CCACAAAGGCTTTCCTTTA
1 CCACAAAGGCTTTCCTTTA
36127462 TTGGTGTTTT
Statistics
Matches: 292, Mismatches: 66, Indels: 51
0.71 0.16 0.12
Matches are distributed among these distances:
25 21 0.07
26 7 0.02
27 41 0.14
28 104 0.36
29 102 0.35
30 11 0.04
31 6 0.02
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (27 bp):
CCACAAAGGCTTTCCTTTACAGATTTG
Found at i:36127182 original size:81 final size:82
Alignment explanation
Indices: 36127076--36127233 Score: 219
Period size: 81 Copynumber: 1.9 Consensus size: 82
36127066 TACAGAGATA
* * *
36127076 GCCACAAAGGCATTCCTCTACAGAGGTTTGCTACAAAGGCTTTCCTTTACAGA-TTTGCCATAAA
1 GCCACAAAGGCATTCCTCTACAGAGGTTTGCCACAAAGGCTTTCATATACAGAGTTTGCCATAAA
36127140 GGCATTCCTTTACATTC
66 GGCATTCCTTTACATTC
* * * * * *
36127157 GCCACAAAGGCTTTCCTTTATAGAGGTTTGCCACAAAGGCTTTCATATCCAGAGTTTTCCATAGA
1 GCCACAAAGGCATTCCTCTACAGAGGTTTGCCACAAAGGCTTTCATATACAGAGTTTGCCATAAA
*
36127222 GGCTTTCCTTTA
66 GGCATTCCTTTA
36127234 ACAGAGATCT
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
81 46 0.70
82 20 0.30
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (82 bp):
GCCACAAAGGCATTCCTCTACAGAGGTTTGCCACAAAGGCTTTCATATACAGAGTTTGCCATAAA
GGCATTCCTTTACATTC
Found at i:36127233 original size:57 final size:58
Alignment explanation
Indices: 36127157--36127290 Score: 148
Period size: 57 Copynumber: 2.3 Consensus size: 58
36127147 CTTTACATTC
* * * * *
36127157 GCCACAAAGGCTTTCCTTT-ATAGAGGTTTGCCACAAAGG-CTTTCATATCCAGAGTTTT
1 GCCATAAAGGCTTTCCTTTAACAGAGATCT-CCAAAAAGGACTTTC-TATCCAGAGTTTT
* * *
36127215 -CCATAGAGGCTTTCCTTTAACAGAGATCTCCAAAAAGGATTTTCTATCTAGAGTTTT
1 GCCATAAAGGCTTTCCTTTAACAGAGATCTCCAAAAAGGACTTTCTATCCAGAGTTTT
*
36127272 GCCATAAAGGCATTCCTTT
1 GCCATAAAGGCTTTCCTTT
36127291 CAAAGGTTCA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
57 36 0.57
58 27 0.43
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (58 bp):
GCCATAAAGGCTTTCCTTTAACAGAGATCTCCAAAAAGGACTTTCTATCCAGAGTTTT
Found at i:36138786 original size:17 final size:18
Alignment explanation
Indices: 36138747--36138784 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
36138737 ATGCATATCA
*
36138747 TTTAGTTGTCATTGCATT
1 TTTATTTGTCATTGCATT
36138765 TTTATTTGTCATTGCATT
1 TTTATTTGTCATTGCATT
36138783 TT
1 TT
36138785 ATCTGTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.11, G:0.13, T:0.61
Consensus pattern (18 bp):
TTTATTTGTCATTGCATT
Found at i:36143668 original size:171 final size:171
Alignment explanation
Indices: 36143373--36143724 Score: 614
Period size: 171 Copynumber: 2.1 Consensus size: 171
36143363 CGACTCGTAT
* * *
36143373 CACATTGTCCAACACAACTCCCGGTACAACATGGCTAACACAGTTGATCCCTAACTCGTCATCTG
1 CACATGGTTCAACACAACTCCCGGTACAACATGGCTAACACAGTTGATCCCCAACTCGTCATCTG
36143438 CATTCTTTAAAGTTGACTAGGTGTAGTAGCCACCTTATGTGTACCAAATTTCAAGATTTATCGAG
66 CATTCTTTAAAGTTGACTAGGTGTAGTAGCCACCTTATGTGTACCAAATTTCAAGATTTATCGAG
*
36143503 CATTATAATGCCTCTAATTAATCTTAAGATGAATACTTGGG
131 CATTATAATGCCTCCAATTAATCTTAAGATGAATACTTGGG
* *
36143544 CACATGGTTCAACACAACTCCCGGTACAACATGGCTAACACAGTTGATCCCCAACTCGTCGTTTG
1 CACATGGTTCAACACAACTCCCGGTACAACATGGCTAACACAGTTGATCCCCAACTCGTCATCTG
* * *
36143609 CATTCTTTAAAGTTGACTAGGTGTAGTAGCCACCTTATGTGTACCACATTTCGAGATTTATCGAT
66 CATTCTTTAAAGTTGACTAGGTGTAGTAGCCACCTTATGTGTACCAAATTTCAAGATTTATCGAG
*
36143674 CATTATAATGCCTCCAATTAATCTTAAGATGAATATTTGGG
131 CATTATAATGCCTCCAATTAATCTTAAGATGAATACTTGGG
36143715 CACATGGTTC
1 CACATGGTTC
36143725 TTTGAAGAAG
Statistics
Matches: 171, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
171 171 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (171 bp):
CACATGGTTCAACACAACTCCCGGTACAACATGGCTAACACAGTTGATCCCCAACTCGTCATCTG
CATTCTTTAAAGTTGACTAGGTGTAGTAGCCACCTTATGTGTACCAAATTTCAAGATTTATCGAG
CATTATAATGCCTCCAATTAATCTTAAGATGAATACTTGGG
Found at i:36144171 original size:10 final size:10
Alignment explanation
Indices: 36144156--36144180 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
36144146 ATCGATAAAA
36144156 TAAAATATTT
1 TAAAATATTT
36144166 TAAAATATTT
1 TAAAATATTT
36144176 TAAAA
1 TAAAA
36144181 ATTAGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TAAAATATTT
Found at i:36144415 original size:16 final size:16
Alignment explanation
Indices: 36144394--36144427 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36144384 TGAATAAAAC
36144394 TTGAGAAAAATGAGAG
1 TTGAGAAAAATGAGAG
* *
36144410 TTGAGAGAATTGAGAG
1 TTGAGAAAAATGAGAG
36144426 TT
1 TT
36144428 TAAAGAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.32, T:0.26
Consensus pattern (16 bp):
TTGAGAAAAATGAGAG
Found at i:36147350 original size:10 final size:10
Alignment explanation
Indices: 36147335--36147367 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
36147325 GTTTTTCACT
36147335 ATTAATGATA
1 ATTAATGATA
36147345 ATTAATGATA
1 ATTAATGATA
36147355 ATTAATGATA
1 ATTAATGATA
36147365 ATT
1 ATT
36147368 CTCTAGAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (10 bp):
ATTAATGATA
Found at i:36152866 original size:19 final size:19
Alignment explanation
Indices: 36152842--36152879 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
36152832 AAACGTTGTG
*
36152842 TTTGATTAGGGGGTTTACT
1 TTTGATCAGGGGGTTTACT
36152861 TTTGATCAGGGGGTTTACT
1 TTTGATCAGGGGGTTTACT
36152880 AAGGTATAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.08, G:0.32, T:0.45
Consensus pattern (19 bp):
TTTGATCAGGGGGTTTACT
Found at i:36158999 original size:21 final size:21
Alignment explanation
Indices: 36158952--36159007 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
36158942 AACGGTGCAG
* **
36158952 ATTTCTATCGGTACCTGTACA
1 ATTTCTATCGATACAAGTACA
* *
36158973 AGTTCTATCGATACAAGTATA
1 ATTTCTATCGATACAAGTACA
*
36158994 ATTTCTACCGATAC
1 ATTTCTATCGATAC
36159008 TAAAAATTTC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.36
Consensus pattern (21 bp):
ATTTCTATCGATACAAGTACA
Found at i:36159821 original size:51 final size:51
Alignment explanation
Indices: 36159707--36159893 Score: 232
Period size: 51 Copynumber: 3.6 Consensus size: 51
36159697 TTTCATTTAA
* * ** * *
36159707 TACTCACGCTGACA-TATAGTCATTGGACCTCTTGTTCCATATAGGAATTCATA
1 TACTCACGATGACACT-TAGTCATCGGACCT-TTAATCCATAAAGG-ATTCATT
* * *
36159760 TACTCACGATGACACTGAGTCATCGGACCTTTAATCCATCATGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGGATTCATT
*
36159811 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGGATTCATT
* *
36159862 TACTCACGATAACACTTAGTCATCAGACCTTT
1 TACTCACGATGACACTTAGTCATCGGACCTTT
36159894 TCGTTTATAG
Statistics
Matches: 118, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
51 83 0.70
52 9 0.08
53 25 0.21
54 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (51 bp):
TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGGATTCATT
Found at i:36167057 original size:51 final size:51
Alignment explanation
Indices: 36166943--36167129 Score: 232
Period size: 51 Copynumber: 3.6 Consensus size: 51
36166933 TTTCATTTAA
* * ** * *
36166943 TACTCACGCTGACA-TATAGTCATTGGACCTCTTGTTCCATATAGGAATTCATA
1 TACTCACGATGACACT-TAGTCATCGGACCT-TTAATCCATAAAGG-ATTCATT
* * *
36166996 TACTCACGATGACACTGAGTCATCGGACCTTTAATCCATCATGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGGATTCATT
*
36167047 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGGATTCATT
* *
36167098 TACTCACGATAACACTTAGTCATCAGACCTTT
1 TACTCACGATGACACTTAGTCATCGGACCTTT
36167130 TCGTTTATAG
Statistics
Matches: 118, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
51 83 0.70
52 9 0.08
53 25 0.21
54 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (51 bp):
TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGGATTCATT
Found at i:36167958 original size:2 final size:2
Alignment explanation
Indices: 36167951--36167980 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
36167941 CTTAAATTTC
*
36167951 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36167981 TAAGGCAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:36170925 original size:13 final size:13
Alignment explanation
Indices: 36170909--36170957 Score: 62
Period size: 13 Copynumber: 3.5 Consensus size: 13
36170899 TGCTTTCAAT
36170909 TCTTGGTGCTCTC
1 TCTTGGTGCTCTC
*
36170922 TCTTGGTGCTTTC
1 TCTTGGTGCTCTC
36170935 AGTTCTTGGTGCTCTC
1 ---TCTTGGTGCTCTC
36170951 TCTTGGT
1 TCTTGGT
36170958 ACTTTCAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 19 0.61
16 12 0.39
ACGTcount: A:0.02, C:0.24, G:0.24, T:0.49
Consensus pattern (13 bp):
TCTTGGTGCTCTC
Found at i:36170941 original size:29 final size:29
Alignment explanation
Indices: 36170899--36170972 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
36170889 TAGCAATCTC
*
36170899 TGCTTTCAATTCTTGGTGCTCTCTCTTGG
1 TGCTTTCAGTTCTTGGTGCTCTCTCTTGG
36170928 TGCTTTCAGTTCTTGGTGCTCTCTCTTGG
1 TGCTTTCAGTTCTTGGTGCTCTCTCTTGG
*
36170957 TACTTTCAGTTCTTGG
1 TGCTTTCAGTTCTTGG
36170973 CTGTTGACTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.07, C:0.23, G:0.22, T:0.49
Consensus pattern (29 bp):
TGCTTTCAGTTCTTGGTGCTCTCTCTTGG
Found at i:36170943 original size:16 final size:15
Alignment explanation
Indices: 36170899--36170972 Score: 66
Period size: 16 Copynumber: 5.0 Consensus size: 15
36170889 TAGCAATCTC
36170899 TGCTTTCAATTCTTGG
1 TGCTTTC-ATTCTTGG
*
36170915 TGCTCTC--TCTTGG
1 TGCTTTCATTCTTGG
36170928 TGCTTTCAGTTCTTGG
1 TGCTTTCA-TTCTTGG
*
36170944 TGCTCTC--TCTTGG
1 TGCTTTCATTCTTGG
*
36170957 TACTTTCAGTTCTTGG
1 TGCTTTCA-TTCTTGG
36170973 CTGTTGACTC
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
13 23 0.49
16 24 0.51
ACGTcount: A:0.07, C:0.23, G:0.22, T:0.49
Consensus pattern (15 bp):
TGCTTTCATTCTTGG
Found at i:36172523 original size:23 final size:23
Alignment explanation
Indices: 36172497--36172545 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
36172487 TAAATATTTG
36172497 TCAGTCTACTTTCTCGGGAAGGT
1 TCAGTCTACTTTCTCGGGAAGGT
36172520 TCAGTCTACTTTCTCGGGAAGGT
1 TCAGTCTACTTTCTCGGGAAGGT
36172543 TCA
1 TCA
36172546 CGCTCGTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.35
Consensus pattern (23 bp):
TCAGTCTACTTTCTCGGGAAGGT
Found at i:36173900 original size:3 final size:3
Alignment explanation
Indices: 36173892--36173946 Score: 85
Period size: 3 Copynumber: 18.3 Consensus size: 3
36173882 AAAATTCCTA
36173892 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
*
36173937 AAT AAA AAT A
1 AAT AAT AAT A
36173947 TTATAAGTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
2 2 0.04
3 43 0.90
4 3 0.06
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:36175032 original size:20 final size:20
Alignment explanation
Indices: 36175007--36175046 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
36174997 TTTTCGCGAA
* *
36175007 AAAGTCAATGGTTAACGGTC
1 AAAGTCAACGGTCAACGGTC
36175027 AAAGTCAACGGTCAACGGTC
1 AAAGTCAACGGTCAACGGTC
36175047 TGTCAATGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (20 bp):
AAAGTCAACGGTCAACGGTC
Found at i:36175100 original size:21 final size:21
Alignment explanation
Indices: 36175074--36175122 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
36175064 GGTTTTGTTT
36175074 TGGGTTTGGTCTTGGTTCAAA
1 TGGGTTTGGTCTTGGTTCAAA
*
36175095 TGGGTTTGGTCTTGGTTCAAT
1 TGGGTTTGGTCTTGGTTCAAA
36175116 TGGGTTT
1 TGGGTTT
36175123 TAGCTTAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.10, C:0.08, G:0.35, T:0.47
Consensus pattern (21 bp):
TGGGTTTGGTCTTGGTTCAAA
Found at i:36182117 original size:23 final size:21
Alignment explanation
Indices: 36182067--36182117 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
36182057 TTATTTTTTG
*
36182067 AATTTTTTTATAAATTTTAAA
1 AATTTTTTAATAAATTTTAAA
36182088 AACTTTTTTAATAAAATTTTTAAA
1 AA-TTTTTTAAT-AAA-TTTTAAA
*
36182112 CATTTT
1 AATTTT
36182118 CATATTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 2 0.08
22 8 0.32
23 7 0.28
24 8 0.32
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTTTTTAATAAATTTTAAA
Found at i:36186428 original size:26 final size:26
Alignment explanation
Indices: 36186393--36186447 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
36186383 TACATACCTA
36186393 CTGGGAAAACAGAACCACACACAGTG
1 CTGGGAAAACAGAACCACACACAGTG
* *
36186419 CTGGGGAAACAGAAGCACACACAGTG
1 CTGGGAAAACAGAACCACACACAGTG
36186445 CTG
1 CTG
36186448 ATCAGAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.25, G:0.27, T:0.09
Consensus pattern (26 bp):
CTGGGAAAACAGAACCACACACAGTG
Found at i:36186453 original size:22 final size:22
Alignment explanation
Indices: 36186400--36186522 Score: 129
Period size: 22 Copynumber: 5.4 Consensus size: 22
36186390 CTACTGGGAA
*
36186400 AACAGAACCACACACAGTGCTGGGG
1 AACAGAAGCACACACAGTGCT---G
36186425 AAACAGAAGCACACACAGTGCTG
1 -AACAGAAGCACACACAGTGCTG
* *
36186448 ATCAGAAACACACACAGTGCTG
1 AACAGAAGCACACACAGTGCTG
* *
36186470 AGCAGAAGCACACACAATGCTG
1 AACAGAAGCACACACAGTGCTG
** * *
36186492 AACAGAAGTTCACACAGTGATA
1 AACAGAAGCACACACAGTGCTG
36186514 AACAGAAGC
1 AACAGAAGC
36186523 GTGCTAGCGT
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
22 63 0.75
23 1 0.01
26 20 0.24
ACGTcount: A:0.42, C:0.25, G:0.22, T:0.11
Consensus pattern (22 bp):
AACAGAAGCACACACAGTGCTG
Found at i:36186455 original size:28 final size:26
Alignment explanation
Indices: 36186399--36186457 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
36186389 CCTACTGGGA
**
36186399 AAACAGAACCACACACAGTGCTGGGG
1 AAACAGAACCACACACAGTGCTGCAG
*
36186425 AAACAGAAGCACACACAGTGCTGATCAG
1 AAACAGAACCACACACAGTGCTG--CAG
36186453 AAACA
1 AAACA
36186458 CACACAGTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 22 0.79
28 6 0.21
ACGTcount: A:0.44, C:0.25, G:0.22, T:0.08
Consensus pattern (26 bp):
AAACAGAACCACACACAGTGCTGCAG
Found at i:36191220 original size:31 final size:31
Alignment explanation
Indices: 36191185--36191263 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 31
36191175 GAACCCCAAA
*
36191185 AAGTTTAAGTACCAACTTAAAAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAAAAAAAAGTGTC
**
36191216 AAGTTT-AGATACCAAATTAGGAAAAAGTGTC
1 AAGTTTAAG-TACCAAATTAAAAAAAAGTGTC
* *
36191247 AAGTTCAAGTACTAAAT
1 AAGTTTAAGTACCAAAT
36191264 GTTATATTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
30 2 0.05
31 37 0.90
32 2 0.05
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAAAAAAAAGTGTC
Found at i:36192397 original size:20 final size:20
Alignment explanation
Indices: 36192315--36192385 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
36192305 AAAAATATAA
* *
36192315 ATTTTGAAATTTTATAAA-T
1 ATTTTGAATTTTTAAAAATT
**
36192334 ATTTT-AAAATTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
36192353 ATTTTGAATTTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
36192373 ATTTTGAATTTTT
1 ATTTTGAATTTTT
36192386 TTACAATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
18 10 0.22
19 11 0.24
20 25 0.54
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:36199172 original size:140 final size:138
Alignment explanation
Indices: 36198918--36199204 Score: 389
Period size: 140 Copynumber: 2.1 Consensus size: 138
36198908 GTGTTTTTAG
* * * * *
36198918 CTTTGAGTCTCGGGTTTGATTCTTTTCCTACTTACATTTGTATTTTTTATTTCATTTTACTTCAA
1 CTTTGAGTCTCGAGTTTGATTCCTTTCCTACTCACATTTGTAATTTTTATTTCATGTTACTTCAA
* *
36198983 GTTTTTTAAATTTTTTAATTAATTTTTTAACATATTAGTTACTTCGTTAAATAGATAGATAGTTG
66 GTTTTTT-AATTTTTTAATTAATTTTTTAACATATTAGTCACTTCGTTAAATAGATAGATAATTG
36199048 TAATTACAT
130 TAATTACAT
* * *
36199057 CCTTTGAGTCTTGAGTTTGATTCCTTTCCTAGTCACATTTGTAATTTTTATTTCATGTTGCTTCA
1 -CTTTGAGTCTCGAGTTTGATTCCTTTCCTACTCACATTTGTAATTTTTATTTCATGTTACTTCA
* * *
36199122 AGCTTTTTT-A-TTTTTAATTAATGTTTTTAACATATTAGCTCATTTTGTTAAATAGTTAGATAA
65 AG-TTTTTTAATTTTTTAATTAAT-TTTTTAACATATTAG-TCACTTCGTTAAATAGATAGATAA
*
36199185 TTGTGATTACAT
127 TTGTAATTACAT
36199197 CTTTGAGT
1 CTTTGAGT
36199205 ATGAGGTTCC
Statistics
Matches: 130, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
138 12 0.09
139 24 0.18
140 88 0.68
141 6 0.05
ACGTcount: A:0.25, C:0.11, G:0.11, T:0.52
Consensus pattern (138 bp):
CTTTGAGTCTCGAGTTTGATTCCTTTCCTACTCACATTTGTAATTTTTATTTCATGTTACTTCAA
GTTTTTTAATTTTTTAATTAATTTTTTAACATATTAGTCACTTCGTTAAATAGATAGATAATTGT
AATTACAT
Found at i:36199244 original size:140 final size:137
Alignment explanation
Indices: 36198951--36199280 Score: 353
Period size: 140 Copynumber: 2.4 Consensus size: 137
36198941 TTTCCTACTT
* *
36198951 ACATTTGTATTTTTTATTTCATTTTACTTCAAGTTTTTTAAATTTTTTAATTAATTTTTTAACAT
1 ACATTTGTATTTTTTATTTCATGTTGCTTCAAGTTTTTT--A-TTTTTAATTAATTTTTTAACAT
* * * ** *
36199016 ATTAGTTACTTCGTTAAATAGATAGATAGTTGTAATTACATCCTTTGAGTCTTGAGTTTGATTCC
63 ATTAGTCACTTCGTTAAATAGATAGATAATTGTAATTACATCCTTTGAGTCATGAGTTCCATTAC
*
36199081 TTTCCTAGTC
128 TTTCATAGTC
*
36199091 ACATTTGTAATTTTTATTTCATGTTGCTTCAAGCTTTTTTATTTTTAATTAATGTTTTTAACATA
1 ACATTTGTATTTTTTATTTCATGTTGCTTCAAG-TTTTTTATTTTTAATTAAT-TTTTTAACATA
* * * *
36199156 TTAGCTCATTTTGTTAAATAGTTAGATAATTGTGATTACAT-CTTTGAGT-ATGAGGTTCCATTA
64 TTAG-TCACTTCGTTAAATAGATAGATAATTGTAATTACATCCTTTGAGTCATGA-GTTCCATTA
* *
36199219 TTTTTATAAG-C
127 CTTTCAT-AGTC
* * *
36199230 ATATTAATGTATTTTTTATTTCATGTCG-TCTAAAGTTTTTTTATTTTTAAT
1 ACATT--TGTATTTTTTATTTCATGTTGCT-TCAAG-TTTTTTATTTTTAAT
36199281 AAATACTTTT
Statistics
Matches: 161, Mismatches: 21, Indels: 15
0.82 0.11 0.08
Matches are distributed among these distances:
138 15 0.09
139 39 0.24
140 63 0.39
141 44 0.27
ACGTcount: A:0.27, C:0.10, G:0.11, T:0.53
Consensus pattern (137 bp):
ACATTTGTATTTTTTATTTCATGTTGCTTCAAGTTTTTTATTTTTAATTAATTTTTTAACATATT
AGTCACTTCGTTAAATAGATAGATAATTGTAATTACATCCTTTGAGTCATGAGTTCCATTACTTT
CATAGTC
Found at i:36202401 original size:14 final size:15
Alignment explanation
Indices: 36202371--36202403 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
36202361 TTTTATACGA
36202371 AATTTTGAATTAGTG
1 AATTTTGAATTAGTG
*
36202386 AATTTT-AATTATTG
1 AATTTTGAATTAGTG
36202400 AATT
1 AATT
36202404 AAAAGTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (15 bp):
AATTTTGAATTAGTG
Found at i:36204057 original size:28 final size:28
Alignment explanation
Indices: 36204025--36204183 Score: 194
Period size: 28 Copynumber: 5.7 Consensus size: 28
36204015 GGCTTAATAA
* * *
36204025 ATATTCTGATTTTGGCTTGGAAAGAGTG
1 ATATTTTGATTTTGGCTCGGAAAGAGCG
* * *
36204053 ATATTCTAATTTTGGCTCGGAAAGAGCA
1 ATATTTTGATTTTGGCTCGGAAAGAGCG
36204081 ATATTTTGATTTTGGCTCGGAAAGAGCG
1 ATATTTTGATTTTGGCTCGGAAAGAGCG
* * *
36204109 ATATTTTGATTCTAGCTCAGAAAGAGCG
1 ATATTTTGATTTTGGCTCGGAAAGAGCG
* *
36204137 ATATTTTGATTCTGGCT-TGAAAGAGCG
1 ATATTTTGATTTTGGCTCGGAAAGAGCG
*
36204164 ATATTTTGGATTCTGGCTCG
1 ATATTTT-GATTTTGGCTCG
36204184 ATCTGAGTGT
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
27 16 0.14
28 100 0.86
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.36
Consensus pattern (28 bp):
ATATTTTGATTTTGGCTCGGAAAGAGCG
Found at i:36204227 original size:26 final size:26
Alignment explanation
Indices: 36204198--36204262 Score: 112
Period size: 26 Copynumber: 2.5 Consensus size: 26
36204188 GAGTGTTATT
*
36204198 TGTCTGGGCTCGTAAGAGCTAATCTC
1 TGTCTAGGCTCGTAAGAGCTAATCTC
36204224 TGTCTAGGCTCGTAAGAGCTAATCTC
1 TGTCTAGGCTCGTAAGAGCTAATCTC
36204250 TGTTCTAGGCTCG
1 TG-TCTAGGCTCG
36204263 AATGAGTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
26 27 0.73
27 10 0.27
ACGTcount: A:0.18, C:0.23, G:0.26, T:0.32
Consensus pattern (26 bp):
TGTCTAGGCTCGTAAGAGCTAATCTC
Found at i:36206992 original size:24 final size:24
Alignment explanation
Indices: 36206943--36206996 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
36206933 ATATATCACA
* *
36206943 ATTATAACATTACATAATATAAAT
1 ATTATAACATTACATAAAACAAAT
*
36206967 ATTATAA-ATTACTATAAAACAGAT
1 ATTATAACATTAC-ATAAAACAAAT
36206991 A-TATAA
1 ATTATAA
36206997 GGAGATAGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (24 bp):
ATTATAACATTACATAAAACAAAT
Found at i:36208049 original size:11 final size:11
Alignment explanation
Indices: 36208035--36208110 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
36208025 GATAATCACT
36208035 TTAATATTAAA
1 TTAATATTAAA
36208046 TTAATA--AAA
1 TTAATATTAAA
*
36208055 -TATTATTAACA
1 TTAATATTAA-A
36208066 -TAAGTATTAAA
1 TTAA-TATTAAA
*
36208077 TTAATTTTAATA
1 TTAATATTAA-A
36208089 TTAAATTATTAAA
1 TT-AA-TATTAAA
*
36208102 ATAATATTA
1 TTAATATTA
36208111 TTTTTAAAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 2 0.04
11 20 0.38
12 14 0.27
13 4 0.08
14 5 0.10
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:36208118 original size:25 final size:25
Alignment explanation
Indices: 36208035--36208110 Score: 84
Period size: 25 Copynumber: 3.1 Consensus size: 25
36208025 GATAATCACT
* *
36208035 TTAATATTAAATTAATAAAATATTA
1 TTAATATTAAATTATTAAAATAATA
* * * *
36208060 TTAACA-T-AAGTATTAAATTAATT
1 TTAATATTAAATTATTAAAATAATA
36208083 TTAATATTAAATTATTAAAATAATA
1 TTAATATTAAATTATTAAAATAATA
36208108 TTA
1 TTA
36208111 TTTTTAAAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
23 16 0.41
24 2 0.05
25 21 0.54
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (25 bp):
TTAATATTAAATTATTAAAATAATA
Found at i:36212210 original size:6 final size:6
Alignment explanation
Indices: 36212189--36212245 Score: 59
Period size: 6 Copynumber: 10.0 Consensus size: 6
36212179 TTTAAATTGG
**
36212189 TTTAAA TTTATT TTTAAA TTTAAA TTT--A TCTTAAA TTTAAA TTT-AA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA TTTAAA
36212235 -TTAAA TTTAAA
1 TTTAAA TTTAAA
36212246 ATTATATTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 4 0.10
5 6 0.14
6 30 0.71
7 2 0.05
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:36212224 original size:17 final size:17
Alignment explanation
Indices: 36212189--36212261 Score: 94
Period size: 17 Copynumber: 4.3 Consensus size: 17
36212179 TTTAAATTGG
*
36212189 TTTAAATTTATTTTTAAA
1 TTTAAATTTA-TATTAAA
*
36212207 TTTAAATTTATCTTAAA
1 TTTAAATTTATATTAAA
36212224 TTTAAATTTA-ATTAAA
1 TTTAAATTTATATTAAA
*
36212240 TTTAAAATTATATTAAA
1 TTTAAATTTATATTAAA
*
36212257 CTTAA
1 TTTAA
36212262 TTAAATGAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
16 14 0.28
17 26 0.52
18 10 0.20
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAAATTTATATTAAA
Found at i:36214146 original size:30 final size:30
Alignment explanation
Indices: 36214097--36214350 Score: 272
Period size: 30 Copynumber: 8.6 Consensus size: 30
36214087 CCCTAAATTG
**
36214097 TCCAAAAATT--ATATTTTTACCCCCAAACT
1 TCCAAAAATTCCAT-TTTTTACCCTAAAACT
*
36214126 TCCAAAAATTCCATTTTTTACCCTGAAACT
1 TCCAAAAATTCCATTTTTTACCCTAAAACT
* *
36214156 TCTAAAAATT--ATATTTTTACCCTCAAACT
1 TCCAAAAATTCCAT-TTTTTACCCTAAAACT
*
36214185 TCCAAAAATTCCATTTTTGACCCTAAAACT
1 TCCAAAAATTCCATTTTTTACCCTAAAACT
* * *
36214215 TCAAAAAATTCCATTTTTAACTCTAAAACT
1 TCCAAAAATTCCATTTTTTACCCTAAAACT
* * *
36214245 TCTAAAAATTACA-TTTTTACCCTTAAACT
1 TCCAAAAATTCCATTTTTTACCCTAAAACT
*
36214274 TCCAAAAATTCCA-TTTTTAACCTCAAAACT
1 TCCAAAAATTCCATTTTTTACCCT-AAAACT
* *
36214304 TCCAAAAATTCCATTTTTGACCCCAAAAC-
1 TCCAAAAATTCCATTTTTTACCCTAAAACT
36214333 T-CAAAAATTACACATTTT
1 TCCAAAAATT-C-CATTTT
36214351 ACCCCGGATG
Statistics
Matches: 194, Mismatches: 22, Indels: 17
0.83 0.09 0.07
Matches are distributed among these distances:
28 10 0.05
29 69 0.36
30 104 0.54
31 11 0.06
ACGTcount: A:0.39, C:0.24, G:0.01, T:0.36
Consensus pattern (30 bp):
TCCAAAAATTCCATTTTTTACCCTAAAACT
Found at i:36214192 original size:59 final size:58
Alignment explanation
Indices: 36214099--36214354 Score: 309
Period size: 59 Copynumber: 4.3 Consensus size: 58
36214089 CTAAATTGTC
* * * *
36214099 CAAAAATTATATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTTACCCTGAAACTT
1 CAAAAATTACATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAAAACTT
*
36214157 CTAAAAATTATATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAAAACTT
1 C-AAAAATTACATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAAAACTT
* * * * * *
36214216 CAAAAAATTCCATTTTTAACTCTAAAACTTCTAAAAATTACATTTTT-ACCCTTAAACTT
1 C-AAAAATTACATTTTT-ACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAAAACTT
* * *
36214275 CCAAAAATTCCATTTTTAACCTCAAAACTTCCAAAAATTCCATTTTTGACCCCAAAAC-T
1 -CAAAAATTACATTTTTACCCTC-AAACTTCCAAAAATTCCATTTTTGACCCTAAAACTT
*
36214334 CAAAAATTACACATTTTACCC
1 CAAAAATTACA-TTTTTACCC
36214355 CGGATGTCCA
Statistics
Matches: 171, Mismatches: 21, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
58 14 0.08
59 123 0.72
60 34 0.20
ACGTcount: A:0.39, C:0.25, G:0.01, T:0.35
Consensus pattern (58 bp):
CAAAAATTACATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAAAACTT
Found at i:36214247 original size:89 final size:88
Alignment explanation
Indices: 36214097--36214354 Score: 349
Period size: 89 Copynumber: 2.9 Consensus size: 88
36214087 CCCTAAATTG
** ** * *
36214097 TCCAAAAATTATATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTTACCCTGAAACTTCTAAA
1 TCCAAAAATTCCATTTTTACCCTAAAACTTCCAAAAATTCCATTTTTAACCCTAAAACTTCTAAA
*
36214162 AATTATATTTTTACCCTCAAACT
66 AATTACATTTTTACCCTCAAACT
* *
36214185 TCCAAAAATTCCATTTTTGACCCTAAAACTTCAAAAAATTCCATTTTTAACTCTAAAACTTCTAA
1 TCCAAAAATTCCATTTTT-ACCCTAAAACTTCCAAAAATTCCATTTTTAACCCTAAAACTTCTAA
*
36214250 AAATTACATTTTTACCCTTAAACT
65 AAATTACATTTTTACCCTCAAACT
* * *
36214274 TCCAAAAATTCCATTTTTAACCTCAAAACTTCCAAAAATTCCATTTTTGACCCCAAAAC-TC-AA
1 TCCAAAAATTCCATTTTTACCCT-AAAACTTCCAAAAATTCCATTTTTAACCCTAAAACTTCTAA
*
36214337 AAATTACACATTTTACCC
65 AAATTACA-TTTTTACCC
36214355 CGGATGTCCA
Statistics
Matches: 151, Mismatches: 16, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
87 10 0.07
88 30 0.20
89 111 0.74
ACGTcount: A:0.38, C:0.25, G:0.01, T:0.35
Consensus pattern (88 bp):
TCCAAAAATTCCATTTTTACCCTAAAACTTCCAAAAATTCCATTTTTAACCCTAAAACTTCTAAA
AATTACATTTTTACCCTCAAACT
Found at i:36214487 original size:28 final size:28
Alignment explanation
Indices: 36214453--36214528 Score: 125
Period size: 28 Copynumber: 2.7 Consensus size: 28
36214443 AAATTTTCCC
*
36214453 AAAATTACCATTTTACCCTCGAGAGTCT
1 AAAATTACCATTTTACCCTCGAAAGTCT
*
36214481 AAAATTACCATTTTACCCCCGAAAGTCT
1 AAAATTACCATTTTACCCTCGAAAGTCT
*
36214509 AAAATTACTATTTTACCCTC
1 AAAATTACCATTTTACCCTC
36214529 AGGTATCCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.33
Consensus pattern (28 bp):
AAAATTACCATTTTACCCTCGAAAGTCT
Found at i:36215726 original size:109 final size:109
Alignment explanation
Indices: 36215607--36215819 Score: 417
Period size: 109 Copynumber: 2.0 Consensus size: 109
36215597 CACTAGGGAC
36215607 TTTTTAAAGAAACGAGAGTCAAGCCAAAATTGATTATTTTTGGGTCTTTTTTGAAAACTTTTAAA
1 TTTTTAAAGAAACGAGAGTCAAGCCAAAATTGATTATTTTTGGGTCTTTTTTGAAAACTTTTAAA
36215672 GCTTCGATTTTGTTTAATATGTGATCCTCAACATTTTTGGGTCT
66 GCTTCGATTTTGTTTAATATGTGATCCTCAACATTTTTGGGTCT
36215716 TTTTTAAAGAAACGAGAGTCAAGCCAAAATTGATTATTTTTGGGTCTTTTTTGAAAACTTTTAAA
1 TTTTTAAAGAAACGAGAGTCAAGCCAAAATTGATTATTTTTGGGTCTTTTTTGAAAACTTTTAAA
*
36215781 GCTTCGATTTTGTTTAATATGTGATCCTCGACATTTTTG
66 GCTTCGATTTTGTTTAATATGTGATCCTCAACATTTTTG
36215820 TGTGGCATTG
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 103 1.00
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (109 bp):
TTTTTAAAGAAACGAGAGTCAAGCCAAAATTGATTATTTTTGGGTCTTTTTTGAAAACTTTTAAA
GCTTCGATTTTGTTTAATATGTGATCCTCAACATTTTTGGGTCT
Found at i:36225836 original size:18 final size:16
Alignment explanation
Indices: 36225809--36225842 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 16
36225799 AGGGCGTCTC
36225809 AAAAAAAAGAAGAAAAG
1 AAAAAAAAGAA-AAAAG
36225826 AAAAGAAAAGAAAAAAG
1 AAAA-AAAAGAAAAAAG
36225843 GTTCAAGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAAAAAAG
Found at i:36225946 original size:20 final size:21
Alignment explanation
Indices: 36225899--36225943 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
36225889 TTTTGAGTTG
36225899 AAAACCCGCAAAGGGCAGCTC
1 AAAACCCGCAAAGGGCAGCTC
*
36225920 AAAACCCGCAAAGGGCGGCTC
1 AAAACCCGCAAAGGGCAGCTC
36225941 AAA
1 AAA
36225944 CCCAGGAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.31, G:0.24, T:0.04
Consensus pattern (21 bp):
AAAACCCGCAAAGGGCAGCTC
Found at i:36227236 original size:201 final size:200
Alignment explanation
Indices: 36226877--36227628 Score: 1143
Period size: 201 Copynumber: 3.8 Consensus size: 200
36226867 GATTATACAC
*
36226877 AAAACAA-TGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTATACCAACTC-AGCGCTCGAT
1 AAAACAAGTGAGGCGATCATCTTCCTGATGAGATACAGAGAAGTATACCAACTCGA-CGCTCGAT
* * * *
36226940 ACGAGTAAATCTTCGAACCCTAGCTTCCTGATGAGATACTAAGAAGCAGGTCGAAGCAATAAAAT
65 GCGAGCAAATCTTCGAACCCTAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAAT
* *
36227005 GGTTAGCTTCCTGATGAGATACTAAGAAGTGGACCAAATACGTCTTCTTGATGAGATACAGAGAA
130 GGTTAGCTTCCTGATGAGATACTAAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAA
36227070 GCGGATT
195 G-GGATT
*
36227077 AAAACAAGTGAGGCGATCATCTTCCTGATGAGATATAGAGAAGTATACCAACTCGACGCTCGATG
1 AAAACAAGTGAGGCGATCATCTTCCTGATGAGATACAGAGAAGTATACCAACTCGACGCTCGATG
36227142 CGAGCAAATCTTCGAACCCTAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAATG
66 CGAGCAAATCTTCGAACCCTAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAATG
* * *
36227207 GTTAGCTTCTTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGAGAAG
131 GTTAGCTTCCTGATGAGATACTAAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAG
36227272 TGGATT
196 -GGATT
*
36227278 AAAACAAGTGAGGCGATCATCTTCCTGATGAGATACAGAGAAGTATACCAACTCGACGCTCAATG
1 AAAACAAGTGAGGCGATCATCTTCCTGATGAGATACAGAGAAGTATACCAACTCGACGCTCGATG
* * *
36227343 CAAGCAAATCTTCGAACCCTTGCTTCCTGATGAGATATTGAGAAGC-AGCTCGAAGCAATAAAAT
66 CGAGCAAATCTTCGAACCCTAGCTTCCTGATGAGATACTGAGAAGCAAG-TCGAAGCAATAAAAT
* * * *
36227407 GGTTAGCTTCCTGATAAGATACTAAAAAGTGGACCAAATTCGTCTTCCTAATGAGACACAGAGAA
130 GGTTAGCTTCCTGATGAGATACTAAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAA
36227472 GGGAATT
195 GGG-ATT
* * * *
36227479 AAAAC-AGCGAGGCGGTCATCTTCCTGATGAGATGCAGAGAAGTATACCAACTCAACGCTCGATG
1 AAAACAAGTGAGGCGATCATCTTCCTGATGAGATACAGAGAAGTATACCAACTCGACGCTCGATG
* * * * * * *
36227543 TGAACAAATCTTCGAACCCCAGCTGCCTGATGAGATACTGAGAAGCAGGTCAAAGCGATAAAATG
66 CGAGCAAATCTTCGAACCCTAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAATG
* *
36227608 GTCATCTTCCTGATGAGATAC
131 GTTAGCTTCCTGATGAGATAC
36227629 AGAGAAGAAT
Statistics
Matches: 505, Mismatches: 42, Indels: 10
0.91 0.08 0.02
Matches are distributed among these distances:
200 136 0.27
201 368 0.73
202 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (200 bp):
AAAACAAGTGAGGCGATCATCTTCCTGATGAGATACAGAGAAGTATACCAACTCGACGCTCGATG
CGAGCAAATCTTCGAACCCTAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAATG
GTTAGCTTCCTGATGAGATACTAAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAG
GGATT
Found at i:36227666 original size:115 final size:115
Alignment explanation
Indices: 36227492--36227750 Score: 392
Period size: 115 Copynumber: 2.3 Consensus size: 115
36227482 ACAGCGAGGC
* * * *
36227492 GGTCATCTTCCTGATGAGATGCAGAGAAGTATACCAACTCAACGCTCGATGTGAACAAATCTTCG
1 GGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGCGAACAAATCTTCG
* * *
36227557 AACCCCAGCTGCCTGATGAGATACTGAGAAGCAGGTCAAAGCGATAAAAT
66 AACCCCAGCTGCCTGATGAGATACTAAGAAGCAGATCAAAGCAATAAAAT
* *
36227607 GGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGCGAGCAAATCTTTG
1 GGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGCGAACAAATCTTCG
* *
36227672 AACCCCAGCTTCCTGATGAGATACTAAGAAGCAGATCGAAGCAATAAAAT
66 AACCCCAGCTGCCTGATGAGATACTAAGAAGCAGATCAAAGCAATAAAAT
* **
36227722 GGTTAGGTTCCTGATGAGATACAGAGAAG
1 GGTCATCTTCCTGATGAGATACAGAGAAG
36227751 CAATTTGAAA
Statistics
Matches: 130, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
115 130 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (115 bp):
GGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGCGAACAAATCTTCG
AACCCCAGCTGCCTGATGAGATACTAAGAAGCAGATCAAAGCAATAAAAT
Found at i:36227906 original size:159 final size:161
Alignment explanation
Indices: 36227609--36227909 Score: 444
Period size: 159 Copynumber: 1.9 Consensus size: 161
36227599 GATAAAATGG
*
36227609 TCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGCGAGCAAATCTTTGAA
1 TCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGCGAGCAAATC--TAAA
* *
36227674 CCCCAGCTTCCTGATGAGATACTAAGAAGCAGATCGAAGCAATAAAATGGTTAGGTTCCTGATGA
64 CCCCAGCTTCCTGATGAGATACTAAGAAGCAGATCGAAGCAATAAAATGGTCAGCTTCCTGATGA
36227739 GATACAGAGAAGCAATTTGAAACAGCGAGGCGA
129 GATACAGAGAAGCAATTTGAAACAGCGAGGCGA
* * * * * *
36227772 TCATCTTTCTGATGAGATACAGAGAAGTATACCAAGTCAGCGCTCGATGCGAGC-AATC-AAATC
1 TCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGCGAGCAAATCTAAACC
* * * * *
36227835 CCAGCTTCCTGATGAGATATTGAGAAGCAGGTCGAAGCGATAAAATGGTCATCTTCCTGATGAGA
66 CCAGCTTCCTGATGAGATACTAAGAAGCAGATCGAAGCAATAAAATGGTCAGCTTCCTGATGAGA
36227900 TACAGAGAAG
131 TACAGAGAAG
36227910 AATACCAACT
Statistics
Matches: 124, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
159 71 0.57
162 4 0.03
163 49 0.40
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (161 bp):
TCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGCGAGCAAATCTAAACC
CCAGCTTCCTGATGAGATACTAAGAAGCAGATCGAAGCAATAAAATGGTCAGCTTCCTGATGAGA
TACAGAGAAGCAATTTGAAACAGCGAGGCGA
Found at i:36227933 original size:111 final size:113
Alignment explanation
Indices: 36227772--36228017 Score: 325
Period size: 115 Copynumber: 2.2 Consensus size: 113
36227762 AGCGAGGCGA
* * * * * * *
36227772 TCATCTTTCTGATGAGATACAGAGAAGTATACCAAGTCAGCGCTCGATGCGAG-CAA-TCAAATC
1 TCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGCGAGAAAATTCAAACC
* * * *
36227835 CCAGCTTCCTGATGAGATATTGAGAAGCAGGTCGAAGCGATAAAATGG
66 CCAGCTTCCTGATGAGATACTAAGAAGAAGGTCGAAGCAATAAAATGG
* *
36227883 TCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAATGCTCAATGCGAGAAAATCTTCGAA
1 TCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGCGAGAAAA--TTCAAA
36227948 CCCCAGCTTCCTGATGAGATACTAAGAAGAAGGTCGAAGCAATAAAATGG
64 CCCCAGCTTCCTGATGAGATACTAAGAAGAAGGTCGAAGCAATAAAATGG
* *
36227998 TTAGCTTCCTGATGAGATAC
1 TCATCTTCCTGATGAGATAC
36228018 TAAGAAGTGG
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
111 47 0.41
112 2 0.02
115 67 0.58
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (113 bp):
TCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGCGAGAAAATTCAAACC
CCAGCTTCCTGATGAGATACTAAGAAGAAGGTCGAAGCAATAAAATGG
Found at i:36227957 original size:274 final size:276
Alignment explanation
Indices: 36227450--36228017 Score: 890
Period size: 274 Copynumber: 2.1 Consensus size: 276
36227440 CCAAATTCGT
* * * * *
36227450 CTTCCTAATGAGACACAGAGAAGGGAATTAAAACAGCGAGGCGGTCATCTTCCTGATGAGATGCA
1 CTTCCTGATGAGATACAGAGAAGGCAATTAAAACAGCGAGGCGATCATCTTCCTGATGAGATACA
* *
36227515 GAGAAGTATACCAACTCAACGCTCGATGTGAACAAATCTTCGAACCCCAGCTGCCTGATGAGATA
66 GAGAAGTATACCAACTCAACGCTCGATGCGAACAAA--TTCAAACCCCAGCTGCCTGATGAGATA
36227580 CTGAGAAGCAGGTCAAAGCGATAAAATGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAAC
129 CTGAGAAGCAGGTCAAAGCGATAAAATGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAAC
* * *
36227645 TCAACGCTCAATGCGAGCAAATCTTTGAACCCCAGCTTCCTGATGAGATACTAAGAAGCAGATCG
194 TCAACGCTCAATGCGAGAAAATCTTCGAACCCCAGCTTCCTGATGAGATACTAAGAAGAAGATCG
36227710 AAGCAATAAAATGGTTAG
259 AAGCAATAAAATGGTTAG
* * *
36227728 GTTCCTGATGAGATACAGAGAA-GCAATTTGAAACAGCGAGGCGATCATCTTTCTGATGAGATAC
1 CTTCCTGATGAGATACAGAGAAGGCAA-TTAAAACAGCGAGGCGATCATCTTCCTGATGAGATAC
* * * * * *
36227792 AGAGAAGTATACCAAGTCAGCGCTCGATGCGAGC-AA-TCAAATCCCAGCTTCCTGATGAGATAT
65 AGAGAAGTATACCAACTCAACGCTCGATGCGAACAAATTCAAACCCCAGCTGCCTGATGAGATAC
*
36227855 TGAGAAGCAGGTCGAAGCGATAAAATGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACT
130 TGAGAAGCAGGTCAAAGCGATAAAATGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACT
* *
36227920 CAATGCTCAATGCGAGAAAATCTTCGAACCCCAGCTTCCTGATGAGATACTAAGAAGAAGGTCGA
195 CAACGCTCAATGCGAGAAAATCTTCGAACCCCAGCTTCCTGATGAGATACTAAGAAGAAGATCGA
36227985 AGCAATAAAATGGTTAG
260 AGCAATAAAATGGTTAG
36228002 CTTCCTGATGAGATAC
1 CTTCCTGATGAGATAC
36228018 TAAGAAGTGG
Statistics
Matches: 266, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
274 179 0.67
277 5 0.02
278 82 0.31
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (276 bp):
CTTCCTGATGAGATACAGAGAAGGCAATTAAAACAGCGAGGCGATCATCTTCCTGATGAGATACA
GAGAAGTATACCAACTCAACGCTCGATGCGAACAAATTCAAACCCCAGCTGCCTGATGAGATACT
GAGAAGCAGGTCAAAGCGATAAAATGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTC
AACGCTCAATGCGAGAAAATCTTCGAACCCCAGCTTCCTGATGAGATACTAAGAAGAAGATCGAA
GCAATAAAATGGTTAG
Found at i:36228496 original size:6 final size:6
Alignment explanation
Indices: 36228475--36228552 Score: 72
Period size: 6 Copynumber: 13.0 Consensus size: 6
36228465 TTAAATTGGT
** * *
36228475 TTTAAA TTTATT TTTAAA TTTAAA TTTATGTAT TTTAAA TTTAAA TTT-AC
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTA---AA TTTAAA TTTAAA TTTAAA
36228525 TTTAAA TTTAAA TTT-AA TTT-AA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
36228553 ATTATATTAA
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
5 14 0.24
6 40 0.68
9 5 0.08
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:36228530 original size:11 final size:11
Alignment explanation
Indices: 36228475--36228574 Score: 62
Period size: 11 Copynumber: 8.6 Consensus size: 11
36228465 TTAAATTGGT
*
36228475 TTTAAATTTATT
1 TTTAAATTTA-A
36228487 TTTAAATTTAAA
1 TTTAAATTT-AA
*
36228499 TTTATGTATTTTAAA
1 TTTA---AATTT-AA
*
36228514 TTTAAATTTAC
1 TTTAAATTTAA
36228525 TTTAAATTTAAA
1 TTTAAATTT-AA
36228537 TTT-AATTTAA
1 TTTAAATTTAA
*
36228547 TTTAAAATT-A
1 TTTAAATTTAA
*
36228557 TATTAAACTTAA
1 T-TTAAATTTAA
36228569 -TTAAAT
1 TTTAAAT
36228575 GAATGTTCAT
Statistics
Matches: 72, Mismatches: 8, Indels: 18
0.73 0.08 0.18
Matches are distributed among these distances:
10 12 0.17
11 26 0.36
12 22 0.31
13 1 0.01
15 11 0.15
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:36228549 original size:33 final size:37
Alignment explanation
Indices: 36228475--36228560 Score: 74
Period size: 38 Copynumber: 2.4 Consensus size: 37
36228465 TTAAATTGGT
*
36228475 TTTAAATTTAT-TTTTAAATTTAAATTTATGTATTTTAAA
1 TTTAAATTTATATTTTAAATTTAAATTTA--T-CTTTAAA
* *
36228514 TTTAAA-TT-TACTTTAAATTTAAATTTA-ATTT-AA
1 TTTAAATTTATATTTTAAATTTAAATTTATCTTTAAA
*
36228547 TTTAAAATTATATT
1 TTTAAATTTATATT
36228561 AAACTTAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
33 8 0.20
34 5 0.12
35 3 0.07
37 1 0.02
38 18 0.44
39 6 0.15
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (37 bp):
TTTAAATTTATATTTTAAATTTAAATTTATCTTTAAA
Found at i:36228551 original size:39 final size:39
Alignment explanation
Indices: 36228475--36228552 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
36228465 TTAAATTGGT
* *
36228475 TTTAAATTTATTTTTAAATTTAAATTTATGTATTTTAAA
1 TTTAAATTTATCTTTAAATTTAAATTTATGTAATTTAAA
*
36228514 TTTAAATTTA-CTTTAAATTTAAATTTAATTTAATTTAAA
1 TTTAAATTTATCTTTAAATTTAAATTT-ATGTAATTTAAA
36228553 ATTATATTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
38 15 0.43
39 20 0.57
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (39 bp):
TTTAAATTTATCTTTAAATTTAAATTTATGTAATTTAAA
Found at i:36228555 original size:17 final size:17
Alignment explanation
Indices: 36228475--36228552 Score: 86
Period size: 17 Copynumber: 4.4 Consensus size: 17
36228465 TTAAATTGGT
*
36228475 TTTAAATTTATTTTTAAA
1 TTTAAATTTA-ATTTAAA
36228493 TTTAAATTTATGTATTTTAAA
1 TTTAAATTTA---A-TTTAAA
*
36228514 TTTAAATTTACTTTAAA
1 TTTAAATTTAATTTAAA
36228531 TTTAAATTTAATTT-AA
1 TTTAAATTTAATTTAAA
36228547 TTTAAA
1 TTTAAA
36228553 ATTATATTAA
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
16 8 0.15
17 19 0.35
18 10 0.19
20 1 0.02
21 16 0.30
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (17 bp):
TTTAAATTTAATTTAAA
Found at i:36228568 original size:22 final size:22
Alignment explanation
Indices: 36228509--36228570 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
36228499 TTTATGTATT
* *
36228509 TTAAATTTAAATTTACTTTAAAT
1 TTAAA-TTAAATTTAATTTAAAA
*
36228532 TTAAATTTAATTTAATTTAAAA
1 TTAAATTAAATTTAATTTAAAA
* *
36228554 TTATATTAAACTTAATT
1 TTAAATTAAATTTAATT
36228571 AAATGAATGT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 28 0.85
23 5 0.15
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (22 bp):
TTAAATTAAATTTAATTTAAAA
Found at i:36229171 original size:30 final size:30
Alignment explanation
Indices: 36229135--36229372 Score: 282
Period size: 29 Copynumber: 8.1 Consensus size: 30
36229125 TAACATTTGA
*
36229135 CCCTAAAACTTCCAAAAATTATATTTTTAC
1 CCCTAAAACTTCCAAAAATTACATTTTTAC
36229165 CCCT-AAACTTCCAAAAATTACATTTTTA-
1 CCCTAAAACTTCCAAAAATTACATTTTTAC
* *
36229193 CCCTCAAACTTCCAAAAATTCCATTTTTTA-
1 CCCTAAAACTTCCAAAAATTACA-TTTTTAC
*
36229223 CCCTAAAACTTCC-AAAATTCCATTTTTGAC
1 CCCTAAAACTTCCAAAAATTACATTTTT-AC
*
36229253 CCC-AAAACTTCCAAAAATTACATTTTTTC
1 CCCTAAAACTTCCAAAAATTACATTTTTAC
36229282 CCCT-AAACTTCCAAAAA-TACCATTTTTGAC
1 CCCTAAAACTTCCAAAAATTA-CATTTTT-AC
36229312 CCC-AAAACTTCCAAAAATT-CTATTTTTAAC
1 CCCTAAAACTTCCAAAAATTAC-ATTTTT-AC
*
36229342 CCC-AAAACTTTCAAAAATTACCA-TTTTAC
1 CCCTAAAACTTCCAAAAATTA-CATTTTTAC
36229371 CC
1 CC
36229373 TAGATGTCCA
Statistics
Matches: 187, Mismatches: 8, Indels: 27
0.84 0.04 0.12
Matches are distributed among these distances:
28 11 0.06
29 88 0.47
30 85 0.45
31 2 0.01
32 1 0.01
ACGTcount: A:0.37, C:0.28, G:0.01, T:0.34
Consensus pattern (30 bp):
CCCTAAAACTTCCAAAAATTACATTTTTAC
Found at i:36229261 original size:59 final size:59
Alignment explanation
Indices: 36229130--36229368 Score: 308
Period size: 59 Copynumber: 4.0 Consensus size: 59
36229120 GCAAATAACA
* *
36229130 TTTGACCCTAAAACTTCCAAAAATT--ATATTTTTACCCCTAAACTTCCAAAAATTACATT
1 TTTGACCCCAAAACTTCCAAAAATTCCAT-TTTTTA-CCCTAAACTTCCAAAAATTCCATT
36229189 TTT-ACCCTC-AAACTTCCAAAAATTCCATTTTTTACCCTAAAACTTCC-AAAATTCCATT
1 TTTGACCC-CAAAACTTCCAAAAATTCCATTTTTTACCCT-AAACTTCCAAAAATTCCATT
* * *
36229247 TTTGACCCCAAAACTTCCAAAAATTACATTTTTTCCCCTAAACTTCCAAAAATACCATT
1 TTTGACCCCAAAACTTCCAAAAATTCCATTTTTTACCCTAAACTTCCAAAAATTCCATT
* * * *
36229306 TTTGACCCCAAAACTTCCAAAAATTCTATTTTTAACCCCAAAACTTTCAAAAATTACCATT
1 TTTGACCCCAAAACTTCCAAAAATTCCATTTTTTA-CCCTAAACTTCCAAAAATT-CCATT
36229367 TT
1 TT
36229369 ACCCTAGATG
Statistics
Matches: 159, Mismatches: 12, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
58 45 0.28
59 89 0.56
60 18 0.11
61 7 0.04
ACGTcount: A:0.37, C:0.27, G:0.01, T:0.35
Consensus pattern (59 bp):
TTTGACCCCAAAACTTCCAAAAATTCCATTTTTTACCCTAAACTTCCAAAAATTCCATT
Found at i:36229383 original size:88 final size:87
Alignment explanation
Indices: 36229130--36229374 Score: 359
Period size: 88 Copynumber: 2.8 Consensus size: 87
36229120 GCAAATAACA
* *
36229130 TTTGACCCTAAAACTTCCAAAAATTATATTTTTACCCCTAAACTTCCAAAAATTACATTTTTACC
1 TTTGACCCTAAAACTTCCAAAAATTCTATTTTTACCCCAAAACTTCCAAAAATTACATTTTTACC
*
36229195 CTCAAACTTCCAAAAATTCCATT
66 CT-AAACTTCCAAAAATACCATT
* * *
36229218 TTTTACCCTAAAACTTCC-AAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTACATTTTTTC
1 TTTGACCCTAAAACTTCCAAAAATTCTATTTTT-ACCCCAAAACTTCCAAAAATTACA-TTTTTA
36229282 CCCTAAACTTCCAAAAATACCATT
64 CCCTAAACTTCCAAAAATACCATT
* *
36229306 TTTGACCCCAAAACTTCCAAAAATTCTATTTTTAACCCCAAAACTTTCAAAAATTACCA-TTTTA
1 TTTGACCCTAAAACTTCCAAAAATTCTATTTTT-ACCCCAAAACTTCCAAAAATTA-CATTTTTA
36229370 CCCTA
64 CCCTA
36229375 GATGTCCAAG
Statistics
Matches: 141, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
87 12 0.09
88 84 0.60
89 43 0.30
90 2 0.01
ACGTcount: A:0.37, C:0.27, G:0.01, T:0.34
Consensus pattern (87 bp):
TTTGACCCTAAAACTTCCAAAAATTCTATTTTTACCCCAAAACTTCCAAAAATTACATTTTTACC
CTAAACTTCCAAAAATACCATT
Found at i:36229505 original size:28 final size:28
Alignment explanation
Indices: 36229469--36229558 Score: 117
Period size: 28 Copynumber: 3.2 Consensus size: 28
36229459 CTAAATTTTC
* *
36229469 CCAATATTACCATTTTTCCCTCGAGAGT
1 CCAAAATTACCATTTTACCCTCGAGAGT
* *
36229497 CCAAAATTACCATTTTACCCTTGAAAGT
1 CCAAAATTACCATTTTACCCTCGAGAGT
* * *
36229525 CCAAAATTACTATTTTACCCCCGAGAAT
1 CCAAAATTACCATTTTACCCTCGAGAGT
36229553 CCAAAA
1 CCAAAA
36229559 AGTCTCATTT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (28 bp):
CCAAAATTACCATTTTACCCTCGAGAGT
Found at i:36230725 original size:52 final size:52
Alignment explanation
Indices: 36230668--36230772 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 52
36230658 ACAATGGTAG
* *
36230668 AGTGTGTGGTTGTATTCAAATGCAACTATAGCAATGACGTGAATAACAATGA
1 AGTGTGTGGTTGGATTCAAACGCAACTATAGCAATGACGTGAATAACAATGA
* * * * * * *
36230720 AGTGTGTGTTTGGATTCAAACGCAATTGTAGCAGTGAGGTGAATTATAATGA
1 AGTGTGTGGTTGGATTCAAACGCAACTATAGCAATGACGTGAATAACAATGA
36230772 A
1 A
36230773 AAGAGAAAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (52 bp):
AGTGTGTGGTTGGATTCAAACGCAACTATAGCAATGACGTGAATAACAATGA
Found at i:36231127 original size:16 final size:16
Alignment explanation
Indices: 36231077--36231127 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
36231067 AAATATTTCT
36231077 ATTATTTAATTATAA-A
1 ATTATTT-ATTATAATA
* *
36231093 ATATATTTATTGTATTA
1 AT-TATTTATTATAATA
*
36231110 ATTATTTATTAAAATA
1 ATTATTTATTATAATA
36231126 AT
1 AT
36231128 AAATAATTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 20 0.71
17 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
ATTATTTATTATAATA
Found at i:36232688 original size:36 final size:36
Alignment explanation
Indices: 36232633--36232731 Score: 155
Period size: 36 Copynumber: 2.8 Consensus size: 36
36232623 AAGGTCATGC
*
36232633 TTACTCTC-TGTTGACCCAAAGGTCATGATGCTTATT
1 TTACTC-CATGTTGACCCAAAGGTCATGATGCTCATT
* *
36232669 TTAGTCCTTGTTGACCCAAAGGTCATGATGCTCATT
1 TTACTCCATGTTGACCCAAAGGTCATGATGCTCATT
36232705 TTACTCCATGTTGACCCAAAGGTCATG
1 TTACTCCATGTTGACCCAAAGGTCATG
36232732 CCTGTTACTA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
35 1 0.02
36 57 0.98
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (36 bp):
TTACTCCATGTTGACCCAAAGGTCATGATGCTCATT
Found at i:36237553 original size:15 final size:15
Alignment explanation
Indices: 36237521--36237558 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
36237511 GTTGACAACA
*
36237521 TAATAATTAAATATT
1 TAATAATAAAATATT
36237536 TAA-AATAAAATAATT
1 TAATAATAAAAT-ATT
36237551 TAATAATA
1 TAATAATA
36237559 TTTTCTTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 7 0.35
15 9 0.45
16 4 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATAATAAAATATT
Found at i:36237718 original size:7 final size:7
Alignment explanation
Indices: 36237708--36237736 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
36237698 GAGGATTGAT
36237708 TATTGTG
1 TATTGTG
36237715 TATTGTG
1 TATTGTG
36237722 TATTGTG
1 TATTGTG
36237729 TATTGTG
1 TATTGTG
36237736 T
1 T
36237737 TGAAAAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.28, T:0.59
Consensus pattern (7 bp):
TATTGTG
Found at i:36237719 original size:21 final size:21
Alignment explanation
Indices: 36237695--36237736 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
36237685 TAAAAAAATA
36237695 ATTGAGGATTGAT-TATTGTGT
1 ATTGAGGATTG-TGTATTGTGT
* *
36237716 ATTGTGTATTGTGTATTGTGT
1 ATTGAGGATTGTGTATTGTGT
36237737 TGAAAAGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (21 bp):
ATTGAGGATTGTGTATTGTGT
Found at i:36247578 original size:28 final size:24
Alignment explanation
Indices: 36247503--36247583 Score: 126
Period size: 24 Copynumber: 3.4 Consensus size: 24
36247493 AATCTTCCAG
*
36247503 TTAAACTCTGTTTATTTGTTTCAA
1 TTAAACTCTATTTATTTGTTTCAA
36247527 TTAAACTCTATTTATTTGTTTCAA
1 TTAAACTCTATTTATTTGTTTCAA
* *
36247551 TTAAACTTTATTTATTTGTTTCAG
1 TTAAACTCTATTTATTTGTTTCAA
*
36247575 TCAAACTCT
1 TTAAACTCT
36247584 TATTAGTCTA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.27, C:0.14, G:0.06, T:0.53
Consensus pattern (24 bp):
TTAAACTCTATTTATTTGTTTCAA
Found at i:36250604 original size:25 final size:24
Alignment explanation
Indices: 36250566--36250632 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 24
36250556 AATAAATATA
* * *
36250566 ATTTAATGACTAAAATTAATTTTAT
1 ATTTTATGATTAAAATT-ATTTAAT
* *
36250591 TTTTTATGATTAAAAATATTTAAT
1 ATTTTATGATTAAAATTATTTAAT
*
36250615 ATTTTATGCATTTAAATT
1 ATTTTATG-ATTAAAATT
36250633 TTAAAATTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
24 13 0.39
25 20 0.61
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.52
Consensus pattern (24 bp):
ATTTTATGATTAAAATTATTTAAT
Found at i:36250811 original size:28 final size:28
Alignment explanation
Indices: 36250757--36250811 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
36250747 TATGTGTTGT
* **
36250757 AAAAATATACACCGTGTAATATTCAAAA
1 AAAAATATACACCGTGTAAAAGACAAAA
36250785 AAAAATATACACCGTGTAAAAGACAAA
1 AAAAATATACACCGTGTAAAAGACAAA
36250812 TTATCAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.56, C:0.15, G:0.09, T:0.20
Consensus pattern (28 bp):
AAAAATATACACCGTGTAAAAGACAAAA
Found at i:36255781 original size:52 final size:52
Alignment explanation
Indices: 36255708--36255992 Score: 486
Period size: 52 Copynumber: 5.5 Consensus size: 52
36255698 GTTTCATTTA
* *
36255708 ATACTCACGATGGCACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACTTAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
*
36255760 ATACTCACGATGACACTTAGTCATCGGACCTCATAGTCCGTAAAGGATTCAT
1 ATACTCACGATGACACTTAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
*
36255812 ATACTCACGATGACACTTAGTCATCGGACCTCATAATCCGTAAAGGATTCGT
1 ATACTCACGATGACACTTAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
*
36255864 ATACTCACGATGACACTTAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACTTAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
36255916 ATACTCATGATGACACTTAGTCATCGGACCTCATAATTCGTAAAGGATTCAT
1 ATACTCACGATGACACTTAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
36255968 ATACT---GATGACACTTAGTCATCGGA
1 ATACTCACGATGACACTTAGTCATCGGA
36255993 AAGCCTGTTA
Statistics
Matches: 223, Mismatches: 10, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
49 20 0.09
52 203 0.91
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (52 bp):
ATACTCACGATGACACTTAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:36265289 original size:19 final size:18
Alignment explanation
Indices: 36265257--36265321 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 18
36265247 TATACTTAGG
*
36265257 TTAATT-ATTAATTAATC
1 TTAATTAATTAATTAAAC
36265274 TTAATTAATCTAATTAAAC
1 TTAATTAAT-TAATTAAAC
*
36265293 ATAATTAAGTTAACCTTAAAC
1 TTAATTAA-TTAA--TTAAAC
*
36265314 ATAATTAA
1 TTAATTAA
36265322 AAATTTGGTG
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.15
18 2 0.05
19 18 0.44
20 1 0.02
21 14 0.34
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.42
Consensus pattern (18 bp):
TTAATTAATTAATTAAAC
Found at i:36279772 original size:18 final size:16
Alignment explanation
Indices: 36279737--36279775 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
36279727 TCTTAATAAA
36279737 TTTTTAATAAATATAT
1 TTTTTAATAAATATAT
*
36279753 TTTTTACATACATAATAT
1 TTTTTA-ATAAAT-ATAT
36279771 TTTTT
1 TTTTT
36279776 TCACCCACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.30
17 5 0.25
18 9 0.45
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (16 bp):
TTTTTAATAAATATAT
Found at i:36294414 original size:10 final size:10
Alignment explanation
Indices: 36294399--36294423 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
36294389 TAACTCAGTT
36294399 AAAATTAGAG
1 AAAATTAGAG
36294409 AAAATTAGAG
1 AAAATTAGAG
36294419 AAAAT
1 AAAAT
36294424 GCTAGTAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.20
Consensus pattern (10 bp):
AAAATTAGAG
Found at i:36297677 original size:12 final size:12
Alignment explanation
Indices: 36297660--36297698 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
36297650 TGGGCGCATT
36297660 CTTTTTCTTTTC
1 CTTTTTCTTTTC
36297672 CTTTTTC-TTTC
1 CTTTTTCTTTTC
*
36297683 CTTTCTCTTTGTC
1 CTTTTTCTTT-TC
36297696 CTT
1 CTT
36297699 CTGCTTGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 10 0.42
12 9 0.38
13 5 0.21
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69
Consensus pattern (12 bp):
CTTTTTCTTTTC
Found at i:36300938 original size:33 final size:33
Alignment explanation
Indices: 36300893--36300967 Score: 141
Period size: 33 Copynumber: 2.3 Consensus size: 33
36300883 TTATCTACTT
*
36300893 CAATGCCCTAACATGATATGTGATGCCCAATGA
1 CAATGCCTTAACATGATATGTGATGCCCAATGA
36300926 CAATGCCTTAACATGATATGTGATGCCCAATGA
1 CAATGCCTTAACATGATATGTGATGCCCAATGA
36300959 CAATGCCTT
1 CAATGCCTT
36300968 CAGTTGCCAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (33 bp):
CAATGCCTTAACATGATATGTGATGCCCAATGA
Found at i:36306934 original size:20 final size:19
Alignment explanation
Indices: 36306897--36306949 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
36306887 AAATACTTAT
* *
36306897 TTTAATATT-ATTTTATTAA
1 TTTAATATTAAATTGATT-A
36306916 TTTAATATTAAATTGATTA
1 TTTAATATTAAATTGATTA
36306935 TCTTAATATTAAATT
1 T-TTAATATTAAATT
36306950 TAATTTAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 11 0.37
20 19 0.63
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTAATATTAAATTGATTA
Found at i:36320075 original size:13 final size:11
Alignment explanation
Indices: 36320058--36320107 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 11
36320048 TTAGTCACTT
36320058 GAAAAAGGAAAA
1 GAAAAA-GAAAA
36320070 TGAAAAA-AGAAA
1 -GAAAAAGA-AAA
36320082 GAAAAAGAAAA
1 GAAAAAGAAAA
36320093 GAGAAAAGAAAA
1 GA-AAAAGAAAA
36320105 GAA
1 GAA
36320108 GAAAAAAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
11 13 0.38
12 15 0.44
13 6 0.18
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (11 bp):
GAAAAAGAAAA
Found at i:36320091 original size:17 final size:18
Alignment explanation
Indices: 36320060--36320114 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 18
36320050 AGTCACTTGA
*
36320060 AAAAGGAAAATGAAAAAAG
1 AAAA-GAAAAAGAAAAAAG
*
36320079 -AAAGAAAAAGAAAAGAG
1 AAAAGAAAAAGAAAAAAG
36320096 AAAAGAAAAGAAGAAAAAA
1 AAAAG-AAA-AAGAAAAAA
36320115 ATGTTTGCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 12 0.40
18 7 0.23
19 3 0.10
20 8 0.27
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (18 bp):
AAAAGAAAAAGAAAAAAG
Found at i:36320092 original size:30 final size:29
Alignment explanation
Indices: 36320060--36320115 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
36320050 AGTCACTTGA
36320060 AAAAG-GAAAATGAAAA-AAGAAAGAAAAAG
1 AAAAGAGAAAA-GAAAAGAAGAAA-AAAAAG
36320089 AAAAGAGAAAAGAAAAGAAGAAAAAAA
1 AAAAGAGAAAAGAAAAGAAGAAAAAAA
36320116 TGTTTGCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (29 bp):
AAAAGAGAAAAGAAAAGAAGAAAAAAAAG
Found at i:36320110 original size:13 final size:13
Alignment explanation
Indices: 36320074--36320112 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 13
36320064 GGAAAATGAA
36320074 AAAAGAAAGAAAAAG
1 AAAAG-AAG-AAAAG
36320089 AAAAG-AGAAAAG
1 AAAAGAAGAAAAG
36320101 AAAAGAAGAAAA
1 AAAAGAAGAAAA
36320113 AAATGTTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 10 0.43
13 8 0.35
15 5 0.22
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AAAAGAAGAAAAG
Found at i:36328318 original size:80 final size:80
Alignment explanation
Indices: 36328233--36328422 Score: 310
Period size: 80 Copynumber: 2.4 Consensus size: 80
36328223 ACGATAATAA
*
36328233 AAGTGAACCCTACTCTAGTTGGATTAACCAACAAAATCGATCAATTCCTGGCACCTAGTGCCTAA
1 AAGTGAGCCCTACTCTAGTTGGATTAACCAACAAAATCGATCAATTCCTGGCACCTAGTGCCTAA
36328298 CAAATAAACTAAAAT
66 CAAATAAACTAAAAT
* * *
36328313 AAGTGAGTCCTACTCTAGTTGGATTAACCAACAAAATCGATCAATTCTTGGCACCTAGTGCCTAG
1 AAGTGAGCCCTACTCTAGTTGGATTAACCAACAAAATCGATCAATTCCTGGCACCTAGTGCCTAA
*
36328378 CAGATAAACTAAAAT
66 CAAATAAACTAAAAT
*
36328393 AAGTGAGCAC-AGCTCTAGTTGGATTAACCA
1 AAGTGAGCCCTA-CTCTAGTTGGATTAACCA
36328423 GTAATTTTGC
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
79 1 0.01
80 101 0.99
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (80 bp):
AAGTGAGCCCTACTCTAGTTGGATTAACCAACAAAATCGATCAATTCCTGGCACCTAGTGCCTAA
CAAATAAACTAAAAT
Found at i:36330668 original size:21 final size:21
Alignment explanation
Indices: 36330644--36330694 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
36330634 GAGATAATAT
*
36330644 TACCGATACA-AGTGTGACTTC
1 TACCGATACATAGTATG-CTTC
* * *
36330665 TACCAAAACATATTATGCTTC
1 TACCGATACATAGTATGCTTC
36330686 TACCGATAC
1 TACCGATAC
36330695 TAAAAATTCT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (21 bp):
TACCGATACATAGTATGCTTC
Found at i:36331690 original size:52 final size:51
Alignment explanation
Indices: 36331590--36331778 Score: 234
Period size: 52 Copynumber: 3.6 Consensus size: 51
36331580 TTCCAATTTA
* * *
36331590 ATACTCACGATGACACAAAAGTCATCAGACCTTAAATCCGTAATAAGATCCAT
1 ATACTCACGATGACACATAA-TCATCAAACCTTAAATCCGTAA-AAGATTCAT
*
36331643 ATACTCACGATGACACATAATCATCAGACCTTATAATCCGTAAAAGATTCAT
1 ATACTCACGATGACACATAATCATCAAACCTTA-AATCCGTAAAAGATTCAT
* * * * ** *
36331695 ATACTCACAATGACATATAGTCATCAAACCTCAAAATTTGTAAAGGATTCAT
1 ATACTCACGATGACACATAATCATCAAACCT-TAAATCCGTAAAAGATTCAT
*
36331747 ATACTCACGATGACACATAGTCATCAAACCTT
1 ATACTCACGATGACACATAATCATCAAACCTT
36331779 TTTCATTTAC
Statistics
Matches: 121, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
52 92 0.76
53 29 0.24
ACGTcount: A:0.41, C:0.23, G:0.10, T:0.26
Consensus pattern (51 bp):
ATACTCACGATGACACATAATCATCAAACCTTAAATCCGTAAAAGATTCAT
Found at i:36334803 original size:25 final size:25
Alignment explanation
Indices: 36334766--36334854 Score: 85
Period size: 25 Copynumber: 3.6 Consensus size: 25
36334756 TACTCTGGAT
* *
36334766 TCTGGCTCATAAGAGTGATATTCTG
1 TCTGACTCGTAAGAGTGATATTCTG
* *
36334791 TCTGACTTGTAAGA-TCGATATTCTA
1 TCTGACTCGTAAGAGT-GATATTCTG
*
36334816 TCT-AGCTCGTAAGAGTGA-AATCTG
1 TCTGA-CTCGTAAGAGTGATATTCTG
36334840 TCTGGACTCGTAAGA
1 TCT-GACTCGTAAGA
36334855 TCTAAACTCT
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
24 9 0.17
25 41 0.79
26 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (25 bp):
TCTGACTCGTAAGAGTGATATTCTG
Found at i:36339546 original size:80 final size:80
Alignment explanation
Indices: 36339397--36339670 Score: 302
Period size: 80 Copynumber: 3.4 Consensus size: 80
36339387 GGGTGCAAAA
* *
36339397 TTGTTGGTTAATCCAACTAGAGTTGGGCTCACTTATTACAGTTTATCCGCTAGGCACTGGGTGTC
1 TTGTTGGTTAATCCAACTAGAGTTAGGCTCACTTATTACAGTTTATCCGCTAGGCACTAGGTGTC
36339462 AGGAATTGACGGATT
66 AGGAATTGACGGATT
** * * *
36339477 TTGTTGGTTAATCCAACTAGAGTTAGGCTCACTTATTATGGTTTATTCGTTAGGTACTAGGTG-C
1 TTGTTGGTTAATCCAACTAGAGTTAGGCTCACTTATTACAGTTTATCCGCTAGGCACTAGGTGTC
36339541 TAGGAATTGACGGATT
66 -AGGAATTGACGGATT
** * * * * *
36339557 TTGTTGGTTAATCCAACTAGAACT-GAGCTCACTTATTGCGGTTTATCTGCTAGGCACTTGGTGC
1 TTGTTGGTTAATCCAACTAGAGTTAG-GCTCACTTATTACAGTTTATCCGCTAGGCACTAGGTGT
* * *
36339621 CAAGAATTGGCGAACTT
65 CAGGAATTGACGGA-TT
* * * * *
36339638 TT-TCGGTTACTCAAACTAGAGCTGGGCTCACTT
1 TTGTTGGTTAATCCAACTAGAGTTAGGCTCACTT
36339671 TTATTATCGT
Statistics
Matches: 166, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
79 2 0.01
80 158 0.95
81 6 0.04
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (80 bp):
TTGTTGGTTAATCCAACTAGAGTTAGGCTCACTTATTACAGTTTATCCGCTAGGCACTAGGTGTC
AGGAATTGACGGATT
Found at i:36341909 original size:18 final size:17
Alignment explanation
Indices: 36341888--36341930 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
36341878 ATAAAAATAA
36341888 AGTAAATAATAAAAAATG
1 AGTAAA-AATAAAAAATG
*
36341906 AGTAACAAATAAATAATG
1 AGTAA-AAATAAAAAATG
*
36341924 AATAAAA
1 AGTAAAA
36341931 CAAATAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 19 0.86
19 1 0.05
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.21
Consensus pattern (17 bp):
AGTAAAAATAAAAAATG
Found at i:36343805 original size:51 final size:51
Alignment explanation
Indices: 36343639--36343805 Score: 191
Period size: 51 Copynumber: 3.3 Consensus size: 51
36343629 TCATCTTGCT
* *
36343639 CCACTGCAACTTCAAAGAGATAAAGATTTGCTTTCATGACTTTAATCCGAC
1 CCACTGCAACTTCAGAGAGATAAAGATTTGCTTTCATGACTTTAATCTGAC
* * * * **
36343690 CCACTGCAACTTCA-AG-GGTATAGGATTTGGTGTGGT-AGCTTT-ATCTTG-C
1 CCACTGCAACTTCAGAGAGATA-AAGATTTGCTTTCATGA-CTTTAATC-TGAC
36343739 TCCACTGCAACTTCAGAGAGATAAAGATTTGCTTTCATGACTTTAATCTGAC
1 -CCACTGCAACTTCAGAGAGATAAAGATTTGCTTTCATGACTTTAATCTGAC
36343791 CCACTGCAACTTCAG
1 CCACTGCAACTTCAG
36343806 TGTATAGGAT
Statistics
Matches: 94, Mismatches: 13, Indels: 18
0.75 0.10 0.14
Matches are distributed among these distances:
49 8 0.09
50 31 0.33
51 47 0.50
52 8 0.09
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (51 bp):
CCACTGCAACTTCAGAGAGATAAAGATTTGCTTTCATGACTTTAATCTGAC
Found at i:36343869 original size:100 final size:99
Alignment explanation
Indices: 36343627--36343932 Score: 411
Period size: 100 Copynumber: 3.1 Consensus size: 99
36343617 CGTAGTACAA
*
36343627 CTTCATCTTGCTCCACTGCAACTTCAAAGAGATAAAGATTTGCTTTCATGACTTTAATCCGACCC
1 CTTCATCTTGCTCCACTGCAACTTCAGAGAGATAAAGATTTGCTTTCATGACTTTAAT-CGACCC
* *
36343692 ACTGCAACTTCAAGGGTATAGGATTTGGTGTGGTAG
65 ACTGCAACTTC-AGGGTATAGGATTTGGTTTTGTAG
*
36343728 CTTTATCTTGCTCCACTGCAACTTCAGAGAGATAAAGATTTGCTTTCATGACTTTAATCTGACCC
1 CTTCATCTTGCTCCACTGCAACTTCAGAGAGATAAAGATTTGCTTTCATGACTTTAATC-GACCC
*
36343793 ACTGCAACTTCAGTGTATAGGATTTGGTTTTGTAG
65 ACTGCAACTTCAGGGTATAGGATTTGGTTTTGTAG
* * * * *
36343828 CTTCATCCTGCTCTACTGCAACTTCAGAGAGAT-AAGAATTTGTTTTC-T-AGCTTCAATGCGAT
1 CTTCATCTTGCTCCACTGCAACTTCAGAGAGATAAAG-ATTTGCTTTCATGA-CTTTAAT-CGAC
* * *
36343890 CCATTGTAACTTCAGGGATATAGGATTTGGTTTTGTAA
63 CCACTGCAACTTCAGGG-TATAGGATTTGGTTTTGTAG
36343928 CTTCA
1 CTTCA
36343933 CTCCATTCCA
Statistics
Matches: 185, Mismatches: 15, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
98 1 0.01
99 26 0.14
100 86 0.46
101 72 0.39
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (99 bp):
CTTCATCTTGCTCCACTGCAACTTCAGAGAGATAAAGATTTGCTTTCATGACTTTAATCGACCCA
CTGCAACTTCAGGGTATAGGATTTGGTTTTGTAG
Found at i:36343923 original size:50 final size:51
Alignment explanation
Indices: 36343682--36343932 Score: 184
Period size: 50 Copynumber: 5.0 Consensus size: 51
36343672 TCATGACTTT
* * *
36343682 AATCC-GACCCACTGCAACTTCAAGGG-TATAGGATTTGGTGTGGTAGCTT-
1 AATCCTGATCCACTGCAACTTC-AGGGATATAGGATTTGGTTTTGTAGCTTC
* * * * * *
36343731 TATCTTGCTCCACTGCAACTTCAGAGAGATA-AAGATTTGCTTTCATG-A-CTTT
1 AATCCTGATCCACTGCAACTTCAG-G-GATATAGGATTTGGTTT--TGTAGCTTC
* *
36343783 AAT-CTGACCCACTGCAACTTCAGTG-TATAGGATTTGGTTTTGTAGCTTC
1 AATCCTGATCCACTGCAACTTCAGGGATATAGGATTTGGTTTTGTAGCTTC
* * * *
36343832 -ATCCTGCTCTACTGCAACTTCAGAGAGATA-AGAATTT-GTTTTCTAGCTTC
1 AATCCTGATCCACTGCAACTTCAG-G-GATATAGGATTTGGTTTTGTAGCTTC
* * * *
36343882 AATGC-GATCCATTGTAACTTCAGGGATATAGGATTTGGTTTTGTAACTTC
1 AATCCTGATCCACTGCAACTTCAGGGATATAGGATTTGGTTTTGTAGCTTC
36343932 A
1 A
36343933 CTCCATTCCA
Statistics
Matches: 155, Mismatches: 30, Indels: 33
0.71 0.14 0.15
Matches are distributed among these distances:
47 2 0.01
48 9 0.06
49 43 0.28
50 53 0.34
51 40 0.26
52 7 0.05
53 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (51 bp):
AATCCTGATCCACTGCAACTTCAGGGATATAGGATTTGGTTTTGTAGCTTC
Found at i:36346179 original size:24 final size:24
Alignment explanation
Indices: 36346147--36346205 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
36346137 TATTTTATTT
36346147 ATTTATTTATTTTGCATGATTTTA
1 ATTTATTTATTTTGCATGATTTTA
* *
36346171 ATTTGTTTAATTTGCATGATTTTA
1 ATTTATTTATTTTGCATGATTTTA
36346195 A-TTATTTATTT
1 ATTTATTTATTT
36346206 GTTACCCATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 8 0.26
24 23 0.74
ACGTcount: A:0.25, C:0.03, G:0.08, T:0.63
Consensus pattern (24 bp):
ATTTATTTATTTTGCATGATTTTA
Found at i:36346447 original size:23 final size:25
Alignment explanation
Indices: 36346404--36346449 Score: 78
Period size: 23 Copynumber: 1.9 Consensus size: 25
36346394 ATTAATTGTA
36346404 TTTATTTAATTTAATTTATTCATGT
1 TTTATTTAATTTAATTTATTCATGT
36346429 TTTATTT-ATTT-ATTTATTCAT
1 TTTATTTAATTTAATTTATTCAT
36346450 TATTGTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 10 0.48
24 4 0.19
25 7 0.33
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTATTTAATTTAATTTATTCATGT
Found at i:36355343 original size:20 final size:21
Alignment explanation
Indices: 36355318--36355364 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
36355308 GTTAGTGTAA
36355318 TTTTTACTTTCACTTT-TTT-C
1 TTTTTACTTTCA-TTTGTTTCC
*
36355338 TTTTTATTTTCATTTGTTTCC
1 TTTTTACTTTCATTTGTTTCC
36355359 TTTTTA
1 TTTTTA
36355365 GTTTGTGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 3 0.12
20 14 0.58
21 7 0.29
ACGTcount: A:0.11, C:0.15, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTTACTTTCATTTGTTTCC
Found at i:36357664 original size:17 final size:18
Alignment explanation
Indices: 36357621--36357664 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
36357611 ATGCATAAGA
* *
36357621 TTTAGTTGTCATTTCATT
1 TTTAGTTGTCACTGCATT
*
36357639 TTTATTTGTCACTGCA-T
1 TTTAGTTGTCACTGCATT
36357656 TTTAGTTGT
1 TTTAGTTGT
36357665 TAGTACATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.16, C:0.11, G:0.14, T:0.59
Consensus pattern (18 bp):
TTTAGTTGTCACTGCATT
Found at i:36370752 original size:12 final size:12
Alignment explanation
Indices: 36370737--36370786 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
36370727 AGAGGTGATC
*
36370737 AAGAGAAGGATG
1 AAGAGAAGGAAG
* *
36370749 AAGAAAAAGAAG
1 AAGAGAAGGAAG
36370761 AAG-GAAAGGAAG
1 AAGAG-AAGGAAG
36370773 AAGAGAAGGAAG
1 AAGAGAAGGAAG
36370785 AA
1 AA
36370787 ACTGAACCTG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
12 30 0.97
13 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02
Consensus pattern (12 bp):
AAGAGAAGGAAG
Found at i:36371860 original size:17 final size:16
Alignment explanation
Indices: 36371838--36371871 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
36371828 TACAACAATG
36371838 AGAAAAAGAAGAAATAA
1 AGAAAAAGAAG-AATAA
*
36371855 AGAAAAATAAGAATAA
1 AGAAAAAGAAGAATAA
36371871 A
1 A
36371872 TTGCTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (16 bp):
AGAAAAAGAAGAATAA
Found at i:36376516 original size:194 final size:194
Alignment explanation
Indices: 36376187--36376575 Score: 715
Period size: 194 Copynumber: 2.0 Consensus size: 194
36376177 GGGACCAAAC
*
36376187 TCAATTCTTTAGCGTCCATCTCATAGCAAACCTCAGCTCCTTCCATCGCTCTGAATCTTTCCTCC
1 TCAATTCTTTAGCGTCCATCTCATAGCAAACCTCAACTCCTTCCATCGCTCTGAATCTTTCCTCC
* * * *
36376252 AACCATTTATAGCACTCCTCTAGCTGATTCGGAAGCTCGACTCTTATTTTCTCTGTCTCTATTAC
66 AACCATTTACAGCACTCCTCCAGCTGATTCGAAAGCTCGAATCTTATTTTCTCTGTCTCTATTAC
36376317 CTTGTTAAAATCTAGTACGACAGGGTTGATTGGGTTATCTCCTGGGTTAGAGCTAGAGCCTATT
131 CTTGTTAAAATCTAGTACGACAGGGTTGATTGGGTTATCTCCTGGGTTAGAGCTAGAGCCTATT
36376381 TCAATTCTTTAGCGTCCATCTCATAGCAAACCTCAACTCCTTCCATCGCTCTGAATCTTTCCTCC
1 TCAATTCTTTAGCGTCCATCTCATAGCAAACCTCAACTCCTTCCATCGCTCTGAATCTTTCCTCC
* *
36376446 AACCATTTACAGCACTCCTCCAGCTGATTCGAAAGTTCGAATCTTATTTTCTCTGTCTTTATTAC
66 AACCATTTACAGCACTCCTCCAGCTGATTCGAAAGCTCGAATCTTATTTTCTCTGTCTCTATTAC
36376511 CTTGTTAAAATCTAGTACGACAGGGTTGATTGGGTTATCTCCTGGGTTAGAGCTAGAGCCTATT
131 CTTGTTAAAATCTAGTACGACAGGGTTGATTGGGTTATCTCCTGGGTTAGAGCTAGAGCCTATT
36376575 T
1 T
36376576 GGTAGTGCAT
Statistics
Matches: 188, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
194 188 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.36
Consensus pattern (194 bp):
TCAATTCTTTAGCGTCCATCTCATAGCAAACCTCAACTCCTTCCATCGCTCTGAATCTTTCCTCC
AACCATTTACAGCACTCCTCCAGCTGATTCGAAAGCTCGAATCTTATTTTCTCTGTCTCTATTAC
CTTGTTAAAATCTAGTACGACAGGGTTGATTGGGTTATCTCCTGGGTTAGAGCTAGAGCCTATT
Found at i:36380700 original size:27 final size:27
Alignment explanation
Indices: 36380663--36380719 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
36380653 CCAATTCACA
36380663 TATTAACATTCCAAGCAATTCAAGAAT
1 TATTAACATTCCAAGCAATTCAAGAAT
36380690 TATTAACATTCCAAGCAATTCAAGAAT
1 TATTAACATTCCAAGCAATTCAAGAAT
36380717 TAT
1 TAT
36380720 GCAAAAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.32
Consensus pattern (27 bp):
TATTAACATTCCAAGCAATTCAAGAAT
Found at i:36380967 original size:18 final size:18
Alignment explanation
Indices: 36380929--36380973 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
36380919 AAATGTGCTA
*
36380929 ACAAATAAA-ATGCAGTG
1 ACAAATAAATATGCAATG
*
36380946 ACAAATAAATATGTAATG
1 ACAAATAAATATGCAATG
*
36380964 ACAACTAAAT
1 ACAAATAAAT
36380974 GCTATGCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22
Consensus pattern (18 bp):
ACAAATAAATATGCAATG
Found at i:36389038 original size:17 final size:18
Alignment explanation
Indices: 36389018--36389051 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36389008 AAGAAATTTA
36389018 AAAAAATT-AGTAAAAAT
1 AAAAAATTAAGTAAAAAT
*
36389035 AAAAAGTTAAGTAAAAA
1 AAAAAATTAAGTAAAAA
36389052 AGAATAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (18 bp):
AAAAAATTAAGTAAAAAT
Found at i:36402413 original size:41 final size:41
Alignment explanation
Indices: 36402356--36402450 Score: 172
Period size: 41 Copynumber: 2.3 Consensus size: 41
36402346 GAATTTTATT
*
36402356 TTAACAAGAATTCTAGTCACCCAATTCTATCAATCTCCACC
1 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
36402397 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
1 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
*
36402438 TTGACAAGAATTC
1 TTAACAAGAATTC
36402451 ACTACGAACA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.36, C:0.29, G:0.06, T:0.28
Consensus pattern (41 bp):
TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
Found at i:36402463 original size:17 final size:17
Alignment explanation
Indices: 36402441--36402479 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
36402431 CTCCACCTTG
* *
36402441 ACAAGAATTCACTACGA
1 ACAAGAACTCACAACGA
*
36402458 ACAAGAACTCTCAACGA
1 ACAAGAACTCACAACGA
36402475 ACAAG
1 ACAAG
36402480 TTCTCCACCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.49, C:0.26, G:0.13, T:0.13
Consensus pattern (17 bp):
ACAAGAACTCACAACGA
Found at i:36435947 original size:6 final size:6
Alignment explanation
Indices: 36435928--36435975 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
36435918 TTACATAATT
* *
36435928 AAAATA AAACTA AAAAT- AAAAT- AAAATA AGAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
36435974 AA
1 AA
36435976 TATACTAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
5 10 0.27
6 27 0.73
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:36435952 original size:22 final size:23
Alignment explanation
Indices: 36435896--36435975 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 23
36435886 GATAATAACT
*
36435896 AAAA-AAAATAGGAATAAAAATA
1 AAAATAAAATAAGAATAAAAATA
36435918 TTACATAATTAAAATAA-AACTAAAAAT-
1 --A-A-AA-TAAAATAAGAA-TAAAAATA
36435945 AAAATAAAATAAGAATAAAAATA
1 AAAATAAAATAAGAATAAAAATA
36435968 AAAATAAA
1 AAAATAAA
36435976 TATACTAATT
Statistics
Matches: 48, Mismatches: 1, Indels: 15
0.75 0.02 0.23
Matches are distributed among these distances:
22 15 0.31
23 12 0.25
24 2 0.04
25 2 0.04
26 2 0.04
27 2 0.04
28 13 0.27
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.20
Consensus pattern (23 bp):
AAAATAAAATAAGAATAAAAATA
Found at i:36449457 original size:2 final size:2
Alignment explanation
Indices: 36449450--36449475 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
36449440 TATCATTGCA
36449450 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
36449476 GTTAAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.