Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 107 of 135
Found at i:36776504 original size:10 final size:10
Alignment explanation
Indices: 36776489--36776532 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
36776479 TTTTAATTAA
36776489 TTTAAAATTT
1 TTTAAAATTT
*
36776499 TTTAAAATAT
1 TTTAAAATTT
36776509 TTTAAATATTT
1 TTTAAA-ATTT
*
36776520 GTTAATAATTT
1 TTTAA-AATTT
36776531 TT
1 TT
36776533 GTACTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
10 15 0.54
11 12 0.43
12 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (10 bp):
TTTAAAATTT
Found at i:36778905 original size:4 final size:4
Alignment explanation
Indices: 36778877--36778923 Score: 60
Period size: 4 Copynumber: 11.8 Consensus size: 4
36778867 AAAATTGAAG
* *
36778877 GAAA -AAA GAAA TAAA AAAGA GAAA GAAA GAAA GAAA GAAA GAAA GAA
1 GAAA GAAA GAAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA GAA
36778924 GAAGGAAGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
3 3 0.08
4 32 0.84
5 3 0.08
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (4 bp):
GAAA
Found at i:36778931 original size:7 final size:7
Alignment explanation
Indices: 36778915--36778947 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
36778905 GAAAGAAAGA
*
36778915 AAGAAAG
1 AAGAAGG
36778922 AAGAAGG
1 AAGAAGG
36778929 AAGAAGG
1 AAGAAGG
36778936 AAGAAGG
1 AAGAAGG
36778943 -AGAAG
1 AAGAAG
36778948 AAAAAAAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (7 bp):
AAGAAGG
Found at i:36778939 original size:29 final size:28
Alignment explanation
Indices: 36778873--36778953 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
36778863 AACGAAAATT
* *
36778873 GAAGGAAAAAAGAAATAAAAAAGAGAAA
1 GAAGGAAGAAAGAAAGAAAAAAGAGAAA
* * *
36778901 GAAAGAAAGAAAGAAAGAAAGAAGAAGGAA
1 G-AAGGAAGAAAGAAAGAAAAAAG-AGAAA
*
36778931 GAAGGAAGAAGGAGAAGAAAAAA
1 GAAGGAAGAAAGA-AAGAAAAAA
36778954 AGGTAATGTG
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
28 1 0.02
29 28 0.67
30 13 0.31
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.01
Consensus pattern (28 bp):
GAAGGAAGAAAGAAAGAAAAAAGAGAAA
Found at i:36779225 original size:23 final size:24
Alignment explanation
Indices: 36779151--36779227 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 24
36779141 TTTAAAAAAA
* *
36779151 TTAATTTGTTAGTTAATTTGATTATT
1 TTAATTT-TTA-TTGATTTGATTAGT
* * *
36779177 TTAAGTTTT-TTGTTTTGTTTAGT
1 TTAATTTTTATTGATTTGATTAGT
36779200 TTAATTTTTAATTGATTTG-TTA-T
1 TTAATTTTT-ATTGATTTGATTAGT
36779223 TTAAT
1 TTAAT
36779228 GTTGTTATAG
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
23 24 0.57
24 3 0.07
25 9 0.21
26 6 0.14
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (24 bp):
TTAATTTTTATTGATTTGATTAGT
Found at i:36779341 original size:20 final size:21
Alignment explanation
Indices: 36779300--36779342 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
36779290 TAATTTACTT
36779300 TAATTTAATTTTGCTAGTTAG
1 TAATTTAATTTTGCTAGTTAG
* *
36779321 TAATTTTATTTTG-TTGTTAG
1 TAATTTAATTTTGCTAGTTAG
36779341 TA
1 TA
36779343 GTAGTAAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.26, C:0.02, G:0.14, T:0.58
Consensus pattern (21 bp):
TAATTTAATTTTGCTAGTTAG
Found at i:36779938 original size:30 final size:30
Alignment explanation
Indices: 36779904--36779997 Score: 75
Period size: 30 Copynumber: 3.2 Consensus size: 30
36779894 AATGGTACAG
*
36779904 AATAAATATTTATTTTGTACAATTTTAGTA
1 AATAAATATATATTTTGTACAATTTTAGTA
** * * * *
36779934 AAT-AAT-GGTGTTTAGATACTATTTTGGTA
1 AATAAATATATATTTTG-TACAATTTTAGTA
* * *
36779963 TATAAATATATATTTTGTACCATTATAGTA
1 AATAAATATATATTTTGTACAATTTTAGTA
36779993 AATAA
1 AATAA
36779998 CTCATTTTGG
Statistics
Matches: 46, Mismatches: 15, Indels: 6
0.69 0.22 0.09
Matches are distributed among these distances:
28 5 0.11
29 16 0.35
30 20 0.43
31 5 0.11
ACGTcount: A:0.39, C:0.04, G:0.11, T:0.46
Consensus pattern (30 bp):
AATAAATATATATTTTGTACAATTTTAGTA
Found at i:36781883 original size:21 final size:21
Alignment explanation
Indices: 36781857--36781903 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
36781847 ACGAGCCACC
*
36781857 GCAATAATTTACTCCTCCCGG
1 GCAATAATCTACTCCTCCCGG
* *
36781878 GCAATACTCTACTCCTCCGGG
1 GCAATAATCTACTCCTCCCGG
36781899 GCAAT
1 GCAAT
36781904 TGGACCCTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.34, G:0.17, T:0.26
Consensus pattern (21 bp):
GCAATAATCTACTCCTCCCGG
Found at i:36782175 original size:28 final size:28
Alignment explanation
Indices: 36782129--36782201 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
36782119 ACATTAAATT
36782129 TTAAAA-CTTAAACCCTAAACCCGACAC
1 TTAAAACCTTAAACCCTAAACCCGACAC
* * * *
36782156 TTAAAACCGTAAACCGTAAACCCTAGAC
1 TTAAAACCTTAAACCCTAAACCCGACAC
* *
36782184 TTCAAACCTTAAATCCTA
1 TTAAAACCTTAAACCCTA
36782202 TACATGAAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
27 6 0.16
28 31 0.84
ACGTcount: A:0.42, C:0.30, G:0.05, T:0.22
Consensus pattern (28 bp):
TTAAAACCTTAAACCCTAAACCCGACAC
Found at i:36785270 original size:13 final size:13
Alignment explanation
Indices: 36785252--36785276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36785242 TCCTTCCTTC
36785252 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
36785265 CTTTCTTTCTTT
1 CTTTCTTTCTTT
36785277 CCCGTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
CTTTCTTTCTTTT
Found at i:36786976 original size:22 final size:22
Alignment explanation
Indices: 36786951--36786992 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
36786941 ATTAAGTTCG
36786951 ATTAATTCGGTTAATCGCATCA
1 ATTAATTCGGTTAATCGCATCA
*
36786973 ATTAATTTGGTTAATCGCAT
1 ATTAATTCGGTTAATCGCAT
36786993 GATTTTAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (22 bp):
ATTAATTCGGTTAATCGCATCA
Found at i:36789956 original size:9 final size:9
Alignment explanation
Indices: 36789921--36789964 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
36789911 TGGTTACCTC
36789921 TTAAATTCTT
1 TTAAATT-TT
*
36789931 TTAAATGTT
1 TTAAATTTT
*
36789940 TT-ATTTTT
1 TTAAATTTT
36789948 TTAAATTTT
1 TTAAATTTT
36789957 TTAAATTT
1 TTAAATTT
36789965 CCTGTCACTG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
8 6 0.21
9 17 0.59
10 6 0.21
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (9 bp):
TTAAATTTT
Found at i:36794876 original size:15 final size:15
Alignment explanation
Indices: 36794858--36794899 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
36794848 GATATCACCT
36794858 AAAAAGAAGAAAAAG
1 AAAAAGAAGAAAAAG
*
36794873 AAAAAG-A-AAAAAT
1 AAAAAGAAGAAAAAG
36794886 AAAAA-AAGAAAAAG
1 AAAAAGAAGAAAAAG
36794900 GAGAGGTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 11 0.48
14 6 0.26
15 6 0.26
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.02
Consensus pattern (15 bp):
AAAAAGAAGAAAAAG
Found at i:36794891 original size:21 final size:22
Alignment explanation
Indices: 36794858--36794899 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
36794848 GATATCACCT
36794858 AAAAAGAAGAAAAAGAAAAAGA
1 AAAAAGAAGAAAAAGAAAAAGA
*
36794880 AAAAATAA-AAAAAGAAAAAG
1 AAAAAGAAGAAAAAGAAAAAG
36794900 GAGAGGTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.02
Consensus pattern (22 bp):
AAAAAGAAGAAAAAGAAAAAGA
Found at i:36796091 original size:86 final size:86
Alignment explanation
Indices: 36795943--36796110 Score: 221
Period size: 86 Copynumber: 2.0 Consensus size: 86
36795933 GGCGAATCTA
* * *
36795943 GTACCATGGAAATATAAAGGGAAAGGTTGAGGCTGCAACGACGAACCCTATACCTTAGAAGATGT
1 GTACCATGGAAATATAAAGGGAAAGGTTGAGGCCGCAACGACAAACCCTATACCTTAAAAGATGT
36796008 GATGGGAAGGATAGAGGTTCG
66 GATGGGAAGGATAGAGGTTCG
* * ** * * *
36796029 GTACCAT-GAAGATATGAAGGGAAAGGTTGAGGCCGTAACGGTAAATCTTGTACCTTAAAAGATG
1 GTACCATGGAA-ATATAAAGGGAAAGGTTGAGGCCGCAACGACAAACCCTATACCTTAAAAGATG
*
36796093 TGATGGGAAGGATTGAGG
65 TGATGGGAAGGATAGAGG
36796111 CTACAACAGC
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
85 3 0.04
86 67 0.96
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.21
Consensus pattern (86 bp):
GTACCATGGAAATATAAAGGGAAAGGTTGAGGCCGCAACGACAAACCCTATACCTTAAAAGATGT
GATGGGAAGGATAGAGGTTCG
Found at i:36796264 original size:49 final size:49
Alignment explanation
Indices: 36796027--36796461 Score: 302
Period size: 49 Copynumber: 8.8 Consensus size: 49
36796017 GATAGAGGTT
* *
36796027 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGTAACGGTAAATC
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGGTGAATC
** * * * * ** * *
36796076 TTGTACCTTAAAAGATGTGATGGG-AAGGATTGAGGCTACAACAGCGAATC
1 CGGTACCAT-GAAGATATGAAGGGAAAGG-TTGAGGCCGCAACGGTGAATC
* * * * *** *
36796126 CGATTCCATAAAGATATGAAGGGAAAGGTTGAGGTCGCAACGACAAACC
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGGTGAATC
** * * * * * * *
36796175 CTATACCTTAAAAGATGTG-ATGGAATGATTGAGGCTGCAACGGTGAATC
1 CGGTACCAT-GAAGATATGAAGGGAAAGGTTGAGGCCGCAACGGTGAATC
* * *** *
36796224 CGGTACCATGAAGATATAAAGGGAAAGGTTGAAGCCGCAACGACAAACC
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGGTGAATC
* * * * * * *
36796273 CTGTACCTTAGAAGATGTGATGGGAAAGATTGAGGCCGGAACGGTAAATC
1 CGGTACCAT-GAAGATATGAAGGGAAAGGTTGAGGCCGCAACGGTGAATC
* * **
36796323 CGGTACCATGAAGATATAAAGGGAAAGGTTGAGGCCGCAATGACGAA-C
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGGTGAATC
* * * * **
36796371 CTTGTACCTTAGAAGATGTGATGGG-AAGGATTGAGGCTACAACGGTGAATC
1 C-GGTACCAT-GAAGATATGAAGGGAAAGG-TTGAGGCCGCAACGGTGAATC
*
36796422 CGGTACCATGAAGATATGAAGGGAAAAGTTGAGGCCGCAA
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAA
36796462 TGATGAACCT
Statistics
Matches: 282, Mismatches: 93, Indels: 22
0.71 0.23 0.06
Matches are distributed among these distances:
48 8 0.03
49 158 0.56
50 114 0.40
51 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.20
Consensus pattern (49 bp):
CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGGTGAATC
Found at i:36796381 original size:197 final size:198
Alignment explanation
Indices: 36796027--36796461 Score: 611
Period size: 197 Copynumber: 2.2 Consensus size: 198
36796017 GATAGAGGTT
* ** * *
36796027 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGTAACGGTAAATCTTGTACCTTAAAAGAT
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACCCTGTACCTTAAAAGAT
* * * * *
36796092 GTGATGGGAAGGATTGAGGCTACAACAGCGAATCCGATTCCATAAAGATATGAAGGGAAAGGTTG
66 GTGATGGGAAAGATTGAGGCCACAACAGCAAATCCGATACCATAAAGATATAAAGGGAAAGGTTG
* * *
36796157 AGGTCGCAACGACAAACCCTATACCTTAAAAGATGTGAT-GGAATGATTGAGGCTGCAACGGTGA
131 AGGCCGCAACGACAAACCCTATACCTTAAAAGATGTGATGGGAAGGATTGAGGCTACAACGGTGA
36796221 ATC
196 ATC
* * *
36796224 CGGTACCATGAAGATATAAAGGGAAAGGTTGAAGCCGCAACGACAAACCCTGTACCTTAGAAGAT
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACCCTGTACCTTAAAAGAT
** * * * *
36796289 GTGATGGGAAAGATTGAGGCCGGAACGGTAAATCCGGTACCATGAAGATATAAAGGGAAAGGTTG
66 GTGATGGGAAAGATTGAGGCCACAACAGCAAATCCGATACCATAAAGATATAAAGGGAAAGGTTG
* * * * *
36796354 AGGCCGCAATGACGAACCTTGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTACAACGGTGA
131 AGGCCGCAACGACAAACCCTATACCTTAAAAGATGTGATGGGAAGGATTGAGGCTACAACGGTGA
36796419 ATC
196 ATC
*
36796422 CGGTACCATGAAGATATGAAGGGAAAAGTTGAGGCCGCAA
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAA
36796462 TGATGAACCT
Statistics
Matches: 207, Mismatches: 30, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
197 144 0.70
198 63 0.30
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.20
Consensus pattern (198 bp):
CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACCCTGTACCTTAAAAGAT
GTGATGGGAAAGATTGAGGCCACAACAGCAAATCCGATACCATAAAGATATAAAGGGAAAGGTTG
AGGCCGCAACGACAAACCCTATACCTTAAAAGATGTGATGGGAAGGATTGAGGCTACAACGGTGA
ATC
Found at i:36796462 original size:99 final size:99
Alignment explanation
Indices: 36796027--36796603 Score: 619
Period size: 99 Copynumber: 5.8 Consensus size: 99
36796017 GATAGAGGTT
* ** * *
36796027 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGTAACGGTAAATCTTGTACCTTAAAAGAT
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACCTTGTACCTTAGAAGAT
* *
36796092 GTGATGGGAAGGATTGAGGCTACAACAGCGAATC
66 GTGATGGGAAGGATTGAGGCTACAACGGTGAATC
* * * * * * *
36796126 CGATTCCATAAAGATATGAAGGGAAAGGTTGAGGTCGCAACGACAAACCCTATACCTTAAAAGAT
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACCTTGTACCTTAGAAGAT
* *
36796191 GTGAT-GGAATGATTGAGGCTGCAACGGTGAATC
66 GTGATGGGAAGGATTGAGGCTACAACGGTGAATC
* * *
36796224 CGGTACCATGAAGATATAAAGGGAAAGGTTGAAGCCGCAACGACAAACCCTGTACCTTAGAAGAT
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACCTTGTACCTTAGAAGAT
* *** *
36796289 GTGATGGGAAAGATTGAGGCCGGAACGGTAAATC
66 GTGATGGGAAGGATTGAGGCTACAACGGTGAATC
* * *
36796323 CGGTACCATGAAGATATAAAGGGAAAGGTTGAGGCCGCAATGACGAACCTTGTACCTTAGAAGAT
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACCTTGTACCTTAGAAGAT
36796388 GTGATGGGAAGGATTGAGGCTACAACGGTGAATC
66 GTGATGGGAAGGATTGAGGCTACAACGGTGAATC
* * ** * * *
36796422 CGGTACCATGAAGATATGAAGGGAAAAGTTGAGGCCGCAATGATGAACCTGGCACCTTAG-AGAC
1 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACCTTGTACCTTAGAAGAT
* ** * *
36796486 GTGATGAGAAAAATCGAGGTCGTAACGAC-G-G-ATC
66 GTGATGGGAAGGATTGAGG-C-T-ACAACGGTGAATC
** * * * * *
36796520 TAGTATCATGGAA-ATATAAAGGGGAAAGGTTGAGGCTGGAACGACAAACCTTGTACCCTAGAA-
1 CGGTACCAT-GAAGATATGAA-GGGAAAGGTTGAGGCCGCAACGACAAACCTTGTACCTTAGAAG
** *
36796583 ACATGATAGGAAGGATTGAGG
64 ATGTGATGGGAAGGATTGAGG
36796604 TCGCAGTGAC
Statistics
Matches: 406, Mismatches: 65, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
98 119 0.29
99 280 0.69
100 3 0.01
101 4 0.01
ACGTcount: A:0.35, C:0.15, G:0.30, T:0.20
Consensus pattern (99 bp):
CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACCTTGTACCTTAGAAGAT
GTGATGGGAAGGATTGAGGCTACAACGGTGAATC
Found at i:36796602 original size:296 final size:296
Alignment explanation
Indices: 36796027--36796603 Score: 705
Period size: 296 Copynumber: 1.9 Consensus size: 296
36796017 GATAGAGGTT
* * ** *
36796027 CGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGTAACGGTAAATCTTGTACCTTAAAAGAT
1 CGGTACCATGAAGATATAAAGGGAAAGGTTGAGGCCGCAACGACAAACCTTGTACCTTAAAAGAT
* *
36796092 GTGATGGGAAGGATTGAGGCTACAACAGCGAATCCGATTCCATAAAGATATGAAGGGAAAGGTTG
66 GTGATGGGAAGGATTGAGGCTACAACAGCGAATCCGATACCATAAAGATATGAAGGGAAAAGTTG
* * * ** * **
36796157 AGGTCGCAACGACAAACCCTATACCTTAAAAGATGTGATGGAATGATTGAGGCTGCAACGGTGAA
131 AGGCCGCAACGACAAACCCTACACCTTAAAAGACGTGATGGAAAAATCGAGGCTGCAACGACGAA
* *
36796222 TCCGGTACCATGAAGATATAAAGGGAAAGGTTGAAGCCGCAACGACAAACCCTGTACCTTAGAAG
196 TCCAGTACCATGAAGATATAAAGGGAAAGGTTGAAGCCGCAACGACAAACCCTGTACCCTAGAAG
** *
36796287 ATGTGATGGGAAAGATTGAGGCCGGAACGGTAAATC
261 ACATGATAGGAAAGATTGAGGCCGGAACGGTAAATC
* * *
36796323 CGGTACCATGAAGATATAAAGGGAAAGGTTGAGGCCGCAATGACGAACCTTGTACCTTAGAAGAT
1 CGGTACCATGAAGATATAAAGGGAAAGGTTGAGGCCGCAACGACAAACCTTGTACCTTAAAAGAT
* * * *
36796388 GTGATGGGAAGGATTGAGGCTACAACGGTGAATCCGGTACCATGAAGATATGAAGGGAAAAGTTG
66 GTGATGGGAAGGATTGAGGCTACAACAGCGAATCCGATACCATAAAGATATGAAGGGAAAAGTTG
* ** * * *
36796453 AGGCCGCAATGATGAA-CCTGGCACCTT-AGAGACGTGATGAGAAAAATCGAGG-TCGTAACGAC
131 AGGCCGCAACGACAAACCCT-ACACCTTAAAAGACGTGATG-GAAAAATCGAGGCT-GCAACGAC
* * * * * * *
36796515 GGATCTAGTATCATGGAA-ATATAAAGGGGAAAGGTTGAGGCTGGAACGACAAACCTTGTACCCT
193 GAATCCAGTACCAT-GAAGATATAAA-GGGAAAGGTTGAAGCCGCAACGACAAACCCTGTACCCT
*
36796579 AGAA-ACATGATAGGAAGGATTGAGG
256 AGAAGACATGATAGGAAAGATTGAGG
36796604 TCGCAGTGAC
Statistics
Matches: 235, Mismatches: 41, Indels: 10
0.82 0.14 0.03
Matches are distributed among these distances:
295 14 0.06
296 181 0.77
297 40 0.17
ACGTcount: A:0.35, C:0.15, G:0.30, T:0.20
Consensus pattern (296 bp):
CGGTACCATGAAGATATAAAGGGAAAGGTTGAGGCCGCAACGACAAACCTTGTACCTTAAAAGAT
GTGATGGGAAGGATTGAGGCTACAACAGCGAATCCGATACCATAAAGATATGAAGGGAAAAGTTG
AGGCCGCAACGACAAACCCTACACCTTAAAAGACGTGATGGAAAAATCGAGGCTGCAACGACGAA
TCCAGTACCATGAAGATATAAAGGGAAAGGTTGAAGCCGCAACGACAAACCCTGTACCCTAGAAG
ACATGATAGGAAAGATTGAGGCCGGAACGGTAAATC
Found at i:36797129 original size:113 final size:114
Alignment explanation
Indices: 36796915--36797207 Score: 392
Period size: 113 Copynumber: 2.6 Consensus size: 114
36796905 CCTCTGTGTT
* * * ** * * *
36796915 ACAGTGAGTCGAATTAAAATAATAAAGTAGATCTCAACGTCCCCGAGAATACAGTGGAGTGGAGT
1 ACAGTGTGTTGAATCAAAATAATAAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGT
* *
36796980 GAAACTTTAAATCTGATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAT
66 GAAACTTCAAATCTGATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAA
* * *
36797029 ATAGTGTGTTGAATCAAAATAATAAAGCCGAGCTCAACGTCCTTGAGGATA-AGTGGAGTGAAGT
1 ACAGTGTGTTGAATCAAAATAATAAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGT
*
36797093 GAGACTTCAAATCCT-ATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAA
66 GAAACTTCAAAT-CTGATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAA
* * * * *
36797142 ACAGTGTGTTGAATCAAAACAATGAATCCGAGCTCAACGTCCCTGAAGATACAATGGAGTGGAGT
1 ACAGTGTGTTGAATCAAAATAATAAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGT
36797207 G
66 G
36797208 TGTAAACACC
Statistics
Matches: 155, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
113 100 0.65
114 55 0.35
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (114 bp):
ACAGTGTGTTGAATCAAAATAATAAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGT
GAAACTTCAAATCTGATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAA
Found at i:36802838 original size:43 final size:42
Alignment explanation
Indices: 36802770--36803014 Score: 276
Period size: 43 Copynumber: 5.7 Consensus size: 42
36802760 TTATAAGAAA
* *
36802770 AAACGCCGCTAAAGAACATGGTCTTTAGTGGCGCTTCACCTAC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTT-ACCTAC
* *
36802813 AAACGCCGCTAAAGACCATGTTCTTTAGCGTCGCTTATCCTAC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-CCTAC
* * *
36802856 AAATGCCGCTAAAGACCATGTTCTTTAGCGTCGCTTATCCTAC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-CCTAC
* * * *
36802899 AAACGCCGCTAAAGATCATGTTCTTTAGCAGCGCTTTATCAAC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC-TTACCTAC
* * *
36802942 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTACTCCAC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAC-CTAC
* * *
36802985 AAACGTCGCTATA-AATAGTGTTCTTTAGCG
1 AAACGCCGCTAAAGAACA-TGTTCTTTAGCG
36803015 ACGTTTTTTC
Statistics
Matches: 176, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
42 7 0.04
43 166 0.94
44 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTACCTAC
Found at i:36809108 original size:22 final size:20
Alignment explanation
Indices: 36809069--36809110 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
36809059 GTTTTTAATT
36809069 ATTAAATATTTAATTAAATA
1 ATTAAATATTTAATTAAATA
36809089 ATTAAATATTTTAAATTAAATA
1 ATTAAATA-TTT-AATTAAATA
36809111 TTTAGGTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 8 0.40
21 3 0.15
22 9 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTAAATATTTAATTAAATA
Found at i:36809140 original size:34 final size:34
Alignment explanation
Indices: 36809102--36809218 Score: 137
Period size: 33 Copynumber: 3.4 Consensus size: 34
36809092 AAATATTTTA
* * *
36809102 AATTAAATATTTAGGTTGTTTTTAATATTTAAAT
1 AATTAAATATTTGGGTTGATTTTAATAATTAAAT
* *
36809136 AATTAATTAATTAATTGGGTTGATTTAAATAATTAAAT
1 AATT-A--AA-TATTTGGGTTGATTTTAATAATTAAAT
*
36809174 AATTAAGTATTTGGGTT-ATTTTAATAATTAAAT
1 AATTAAATATTTGGGTTGATTTTAATAATTAAAT
36809207 AATTAAATATTT
1 AATTAAATATTT
36809219 TGAAGTAAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
33 26 0.37
34 13 0.19
35 2 0.03
37 3 0.04
38 26 0.37
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (34 bp):
AATTAAATATTTGGGTTGATTTTAATAATTAAAT
Found at i:36809164 original size:30 final size:30
Alignment explanation
Indices: 36809127--36809212 Score: 111
Period size: 30 Copynumber: 2.8 Consensus size: 30
36809117 TTGTTTTTAA
*
36809127 TATTTAAATAATTAATTAATTAA-TTGGGT
1 TATTTAAATAATTAAATAATTAATTTGGGT
36809156 TGATTTAAATAATTAAATAATTAAGTATTTGGGT
1 T-ATTTAAATAATTAAATAATT-A--ATTTGGGT
*
36809190 TATTTTAATAATTAAATAATTAA
1 TATTTAAATAATTAAATAATTAA
36809213 ATATTTTGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
29 1 0.02
30 20 0.40
31 1 0.02
32 1 0.02
33 20 0.40
34 7 0.14
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (30 bp):
TATTTAAATAATTAAATAATTAATTTGGGT
Found at i:36809285 original size:34 final size:34
Alignment explanation
Indices: 36809247--36809411 Score: 116
Period size: 34 Copynumber: 4.6 Consensus size: 34
36809237 TGTTTTTAAT
*
36809247 ATTTAAATAAATAAATAAATAATTAATTGAGTTG
1 ATTTAAATAAATAAATAATTAATTAATTGAGTTG
* * * *
36809281 ATTTAAAT-AATTAATAATTAAGTATTTGGGTTG
1 ATTTAAATAAATAAATAATTAATTAATTGAGTTG
* *
36809314 TTTTTAATATTTAAATAATTAATTAATTAATTAATTGGGTTG
1 -ATTTAA-A--TAAAT-A--AA-TAATTAATTAATTGAGTTG
* * * * *
36809356 ATTTAAATAATTAAATAGTTAAGTATTTGGGTTG
1 ATTTAAATAAATAAATAATTAATTAATTGAGTTG
* * *
36809390 TTTTTAATAATTAAATAATTAA
1 ATTTAAATAAATAAATAATTAA
36809412 ATATTTTGAA
Statistics
Matches: 105, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
33 20 0.19
34 48 0.46
35 3 0.03
37 2 0.02
38 7 0.07
40 1 0.01
41 7 0.07
42 17 0.16
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (34 bp):
ATTTAAATAAATAAATAATTAATTAATTGAGTTG
Found at i:36809417 original size:34 final size:34
Alignment explanation
Indices: 36809322--36809545 Score: 135
Period size: 34 Copynumber: 6.8 Consensus size: 34
36809312 TGTTTTTAAT
* * *
36809322 ATTTAAATAATTAATTAATTAATTAATTGGGTTG
1 ATTTAAATAATTAAATAATTAAATATTTGGGTTG
* *
36809356 ATTTAAATAATTAAATAGTTAAGTATTTGGGTTG
1 ATTTAAATAATTAAATAATTAAATATTTGGGTTG
* *
36809390 TTTTTAATAATTAAATAATTAAATA-TT---TTG
1 ATTTAAATAATTAAATAATTAAATATTTGGGTTG
* * *** ** *
36809420 AATTAAATATTTGGGTTGTTTTTAATA--T---TT-
1 ATTTAAATAATT-AAAT-AATTAAATATTTGGGTTG
** * * * * *
36809450 AAATAATTAATTAATTAATTAATTAATTGAGTTG
1 ATTTAAATAATTAAATAATTAAATATTTGGGTTG
*
36809484 ATTTAAATAATTAAATAATTAAGTATTTGGGTTG
1 ATTTAAATAATTAAATAATTAAATATTTGGGTTG
* *
36809518 TTTTTAATAATTAAATAATTAAATATTT
1 ATTTAAATAATTAAATAATTAAATATTT
36809546 TGAATTAAAT
Statistics
Matches: 145, Mismatches: 37, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
28 5 0.03
29 2 0.01
30 21 0.14
31 4 0.03
32 6 0.04
33 4 0.03
34 103 0.71
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (34 bp):
ATTTAAATAATTAAATAATTAAATATTTGGGTTG
Found at i:36809462 original size:4 final size:4
Alignment explanation
Indices: 36809448--36809505 Score: 53
Period size: 4 Copynumber: 14.0 Consensus size: 4
36809438 TTTTTAATAT
* * * *
36809448 TTAA ATAA TTAA TTAA TTAA TTAA TTAA TTGAG TTGAT TTAA ATAA TTAA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT-AA TT-AA TTAA TTAA TTAA
*
36809498 ATAA TTAA
1 TTAA TTAA
36809506 GTATTTGGGT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
4 37 0.84
5 7 0.16
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (4 bp):
TTAA
Found at i:36809594 original size:30 final size:30
Alignment explanation
Indices: 36809558--36809653 Score: 104
Period size: 30 Copynumber: 3.1 Consensus size: 30
36809548 AATTAAATAT
36809558 TTGGGTTATTTTTAATATTTAAATAATTAA
1 TTGGGTTATTTTTAATATTTAAATAATTAA
* *
36809588 TTGGGTTGA-TTTAAATAATTAAATAATTAAGTA
1 TTGGGTT-ATTTTTAATATTTAAATAATT-A--A
* *
36809621 TTTGGGTTGTTTTTAATATTTAAATAAATAA
1 -TTGGGTTATTTTTAATATTTAAATAATTAA
36809652 TT
1 TT
36809654 AATTAATTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
30 26 0.48
31 3 0.06
33 2 0.04
34 23 0.43
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (30 bp):
TTGGGTTATTTTTAATATTTAAATAATTAA
Found at i:36809602 original size:48 final size:48
Alignment explanation
Indices: 36809500--36809604 Score: 138
Period size: 48 Copynumber: 2.2 Consensus size: 48
36809490 ATAATTAAAT
* * **
36809500 AATTAAGTATTTGGGTTGTTTTTAATAATTAAATAATTAAATATTTTG
1 AATTAAATATTTGGGTTATTTTTAATAATTAAATAATTAAATAGGTTG
* * *
36809548 AATTAAATATTTGGGTTATTTTTAATATTTAAATAATTAATTGGGTTG
1 AATTAAATATTTGGGTTATTTTTAATAATTAAATAATTAAATAGGTTG
*
36809596 ATTTAAATA
1 AATTAAATA
36809605 ATTAAATAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (48 bp):
AATTAAATATTTGGGTTATTTTTAATAATTAAATAATTAAATAGGTTG
Found at i:36809644 original size:34 final size:33
Alignment explanation
Indices: 36809548--36809652 Score: 126
Period size: 34 Copynumber: 3.2 Consensus size: 33
36809538 AAATATTTTG
*
36809548 AATTAAATATTTGGGTTATTTTTAATATTTAAAT
1 AATT-AATATTTGGGTTGTTTTTAATATTTAAAT
* * *
36809582 AATT-A-A-TTGGGTTGATTTAAATAATTAAAT
1 AATTAATATTTGGGTTGTTTTTAATATTTAAAT
36809612 AATTAAGTATTTGGGTTGTTTTTAATATTTAAAT
1 AATTAA-TATTTGGGTTGTTTTTAATATTTAAAT
*
36809646 AAATAAT
1 AATTAAT
36809653 TAATTAATTA
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
30 24 0.41
31 2 0.03
32 1 0.02
33 2 0.03
34 30 0.51
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (33 bp):
AATTAATATTTGGGTTGTTTTTAATATTTAAAT
Found at i:36809713 original size:90 final size:89
Alignment explanation
Indices: 36809612--36810047 Score: 335
Period size: 90 Copynumber: 4.9 Consensus size: 89
36809602 ATAATTAAAT
* *
36809612 AATTAAGTATTTGGGTTGTTTTTAATATTTAAATAAATAATTAATTAATTAATTGGGTTGATTTA
1 AATTAAATATTTGGATTGTTTTTAATATTTAAATAAATAATTAATTAATTAATTGGGTTGATTTA
36809677 AATAATTAAATAATTAAATATTTCG
66 AATAATTAAATAATTAAATATTT-G
* * * *
36809702 AATTAAATATTTGGTTTGTTTTTAATATTTAAATAATTAATTAATTAATTAATTAGATTGATTTA
1 AATTAAATATTTGGATTGTTTTTAATATTTAAATAAATAATTAATTAATTAATTGGGTTGATTTA
36809767 AATAATTAAATAA-TAAAGTATTT-
66 AATAATTAAATAATTAAA-TATTTG
* * * * * * * * * *
36809790 AGGTT--AT-TTT-TAATG-ATTAAATAATTAAAT--AT-TTTGAATTAAATATTTGGGTTGTTT
1 A-ATTAAATATTTGGATTGTTTTTAATATTTAAATAAATAATT-AATTAATTAATTGGGTTGATT
* * * **
36809847 TTAATATTTAAATAAATAAATAAAT-
64 TAAATAATTAAATAATTAAATATTTG
* * * ** * * * * * * * *
36809872 AATTAATTAATT-AATTG-GGTT--GATTTAAATAATTAAATAATTAAGTATTTGAGTTGTTTTT
1 AATTAAATATTTGGATTGTTTTTAATATTTAAATAAATAATTAATTAATTAATTGGGTTGATTTA
36809933 AATAATTAAATAATTAAATATTTTG
66 AATAATTAAATAATTAAATA-TTTG
36809958 AATTAAATATTTGGATTGTTTTTAATATTTAAATAAATAAATAATTAATTAATTAATTAATTGGG
1 AATTAAATATTTGGATTGTTTTTAATA-TT---TAAAT--A-AA-TAATTAATTAATTAATTGGG
*
36810023 TTGATTTAAGTAATTAAATAATTAA
58 TTGATTTAAATAATTAAATAATTAA
36810048 GAATTTGGGT
Statistics
Matches: 266, Mismatches: 56, Indels: 40
0.73 0.15 0.11
Matches are distributed among these distances:
81 4 0.02
82 41 0.15
83 5 0.02
84 58 0.22
85 4 0.02
86 13 0.05
87 6 0.02
88 3 0.01
89 6 0.02
90 79 0.30
91 2 0.01
94 5 0.02
96 1 0.00
97 1 0.00
98 38 0.14
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.47
Consensus pattern (89 bp):
AATTAAATATTTGGATTGTTTTTAATATTTAAATAAATAATTAATTAATTAATTGGGTTGATTTA
AATAATTAAATAATTAAATATTTG
Found at i:36809741 original size:124 final size:124
Alignment explanation
Indices: 36809079--36809335 Score: 341
Period size: 119 Copynumber: 2.1 Consensus size: 124
36809069 ATTAAATATT
*
36809079 TAATTAAATAATTAAATATTTTAAATTAAATATTTAGG-TTGTTTTTAATATTTAAATAA-T---
1 TAATTAAATAATTAAATATTTTGAATTAAATATTT-GGATTGTTTTTAATATTTAAATAATTAAA
* * *
36809139 TAATTAATTAATTGGGTTGATTTAAATAATTAAATAATTAAGTATTTGGGTT-ATTTTAA
65 TAATTAATTATTTTGATTGATTTAAATAATTAAATAATTAAGTATTTGGGTTGATTTTAA
* * *
36809198 TAATTAAATAATTAAATATTTTGAAGTAAATATTTGGGTTGTTTTTAATATTTAAATAAATAAAT
1 TAATTAAATAATTAAATATTTTGAATTAAATATTTGGATTGTTTTTAATATTTAAATAATTAAAT
* * *
36809263 AAATAATTA-ATTGAGTTGATTTAAATAATT-AATAATTAAGTATTTGGGTTGTTTTTAA
66 AATTAATTATTTTGA-TTGATTTAAATAATTAAATAATTAAGTATTTGGGTTGATTTTAA
*
36809321 TATTTAAATAATTAA
1 TAATTAAATAATTAA
36809336 TTAATTAATT
Statistics
Matches: 123, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
118 2 0.02
119 54 0.44
120 1 0.01
122 22 0.18
123 44 0.36
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (124 bp):
TAATTAAATAATTAAATATTTTGAATTAAATATTTGGATTGTTTTTAATATTTAAATAATTAAAT
AATTAATTATTTTGATTGATTTAAATAATTAAATAATTAAGTATTTGGGTTGATTTTAA
Found at i:36809900 original size:124 final size:127
Alignment explanation
Indices: 36809325--36810046 Score: 697
Period size: 128 Copynumber: 5.4 Consensus size: 127
36809315 TTTTAATATT
* * *
36809325 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAATTAAATAGTTAAGTATTTGGGTTG
1 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAA-TAAATAATT-A-TA--TGAGTTA
*
36809390 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAATATTTAAAT-
61 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGATTGTTTTTAATATTTAAATA
36809454 AA
126 AA
* * *
36809456 T---TAATTAATTAATTAATTAATTGAGTTGATTTAAATAATTAAATAATTAAGTATTTGGGTTG
1 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAA-TAAATAATT-A-TA--TGAGTTA
* *
36809518 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTATTTTTAATATTTAAATA
61 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGATTGTTTTTAATATTT--A-A
36809583 ATTAATTGGGTTGA
123 A-TAA--------A
* * * * *
36809597 TTTAAATAATTAAATAATTAAGTATTTGGGTTGTTTTTAATATTTAAATAAATAATTAATTAATT
1 --TAAATAATTAATTAATTAATTAATTGGGTTG-ATTTAA-A--T-AATAAATAATT-A-T-ATG
* * * *
36809662 AATTGGGTTGATTTAAATAATTAAATAATTAAATATTTCGAATTAAATATTTGGTTTGTTTTTAA
56 AGTT--ATT--TTT-AATAATTAAATAATTAAATATTTTGAATTAAATATTTGGATTGTTTTTAA
*
36809727 TATTTAAATAAT
116 TATTTAAATAAA
* * **** *
36809739 TAATTAATTAATTAATTAGATTGATTTAAAT-AATTAAATAATAAAGT-ATT-TA-G-GTTATTT
1 TAAATAATTAATTAATTA-ATTAATTGGGTTGATTTAAATAATAAA-TAATTATATGAGTTATTT
* *
36809799 TTAATGATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAATATTTAAATAAA
64 TTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGATTGTTTTTAATATTTAAATAAA
* *
36809863 TAAATAAATAATTAATTAATTAATTGGGTTGATTTAAATAATTAAATAATTAAGTATTTGAGTTG
1 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAA-TAAATAATT-A-TA--TGAGTTA
36809928 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGATTGTTTTTAATATTTAAATA
61 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGATTGTTTTTAATATTTAAATA
36809993 AA
126 AA
*
36809995 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAGTAATTAAATAATTA
1 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAA-TAAATAATTA
36810047 AGAATTTGGG
Statistics
Matches: 503, Mismatches: 47, Indels: 82
0.80 0.07 0.13
Matches are distributed among these distances:
123 7 0.01
124 84 0.17
125 10 0.02
127 2 0.00
128 120 0.24
129 2 0.00
130 1 0.00
131 6 0.01
132 119 0.24
133 1 0.00
135 9 0.02
136 2 0.00
138 1 0.00
139 4 0.01
140 16 0.03
141 6 0.01
143 1 0.00
146 23 0.05
147 5 0.01
148 1 0.00
149 3 0.01
150 16 0.03
151 8 0.02
152 1 0.00
153 3 0.01
154 52 0.10
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (127 bp):
TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAATAAATAATTATATGAGTTATTTTT
AATAATTAAATAATTAAATATTTTGAATTAAATATTTGGATTGTTTTTAATATTTAAATAAA
Found at i:36809955 original size:34 final size:34
Alignment explanation
Indices: 36809863--36809955 Score: 114
Period size: 34 Copynumber: 2.7 Consensus size: 34
36809853 TTTAAATAAA
* * * * *
36809863 TAAATAAATAATTAATTAATTAATTGGGTTGATT
1 TAAATAATTAAATAATTAAATATTTGAGTTGATT
* *
36809897 TAAATAATTAAATAATTAAGTATTTGAGTTGTTT
1 TAAATAATTAAATAATTAAATATTTGAGTTGATT
*
36809931 TTAATAATTAAATAATTAAATATTT
1 TAAATAATTAAATAATTAAATATTT
36809956 TGAATTAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 51 1.00
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.46
Consensus pattern (34 bp):
TAAATAATTAAATAATTAAATATTTGAGTTGATT
Found at i:36810012 original size:132 final size:132
Alignment explanation
Indices: 36809325--36810074 Score: 993
Period size: 132 Copynumber: 5.6 Consensus size: 132
36809315 TTTTAATATT
*
36809325 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAATTAAATAGTTAAGTATTTGGGTTG
1 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAATTAAATAATTAAGTATTTGGGTTG
36809390 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAATATTTAAAT-
66 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAATATTTAAATA
36809454 AA
131 AA
*
36809456 T---TAATTAATTAATTAATTAATTGAGTTGATTTAAATAATTAAATAATTAAGTATTTGGGTTG
1 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAATTAAATAATTAAGTATTTGGGTTG
*
36809518 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTATTTTTAATATTTAAATA
66 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAATATTT--A-A
36809583 ATTAATTGGGTTGA
128 A-TAA--------A
* * * * * *
36809597 TTTAAATAATTAAATAATTAAGTATTTGGGTTGTTTTTAATATTTAAATAAATAATTAATTAATT
1 --TAAATAATTAATTAATTAATTAATTGGGTTG-ATTTAA-A--TAATTAAATAATTAAGT-A-T
* * * *
36809662 AATTGGGTTGATTTAAATAATTAAATAATTAAATATTTCGAATTAAATATTTGGTTTGTTTTTAA
58 --TTGGGTTGTTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAA
36809727 TATTTAAAT-AA
121 TATTTAAATAAA
* * * *
36809738 T---TAATTAATTAATTAATT-A---GATTGATTTAAATAATTAAATAATAAAGTATTTAGGTTA
1 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAATTAAATAATTAAGTATTTGGGTTG
*
36809796 TTTTTAATGATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAATATTTAAATA
66 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAATATTTAAATA
36809861 AA
131 AA
* *
36809863 TAAATAAATAATTAATTAATTAATTGGGTTGATTTAAATAATTAAATAATTAAGTATTTGAGTTG
1 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAATTAAATAATTAAGTATTTGGGTTG
*
36809928 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGATTGTTTTTAATATTTAAATA
66 TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAATATTTAAATA
36809993 AA
131 AA
* *
36809995 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAGTAATTAAATAATTAAGAATTTGGGTTG
1 TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAATTAAATAATTAAGTATTTGGGTTG
* *
36810060 TTTTTATTATTTAAA
66 TTTTTAATAATTAAA
36810075 ATTTAAAAAA
Statistics
Matches: 541, Mismatches: 44, Indels: 67
0.83 0.07 0.10
Matches are distributed among these distances:
124 65 0.12
125 3 0.01
126 1 0.00
127 1 0.00
128 148 0.27
129 1 0.00
130 2 0.00
131 8 0.01
132 178 0.33
133 1 0.00
136 15 0.03
139 1 0.00
141 2 0.00
143 1 0.00
146 23 0.04
147 5 0.01
148 1 0.00
149 1 0.00
150 16 0.03
151 3 0.01
152 2 0.00
154 63 0.12
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (132 bp):
TAAATAATTAATTAATTAATTAATTGGGTTGATTTAAATAATTAAATAATTAAGTATTTGGGTTG
TTTTTAATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAATATTTAAATA
AA
Found at i:36810257 original size:10 final size:10
Alignment explanation
Indices: 36810242--36810268 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
36810232 TTCCTATGTT
36810242 GAATTTATTA
1 GAATTTATTA
36810252 GAATTTATTA
1 GAATTTATTA
36810262 GAATTTA
1 GAATTTA
36810269 AATGATTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (10 bp):
GAATTTATTA
Found at i:36811883 original size:15 final size:15
Alignment explanation
Indices: 36811863--36811906 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36811853 GGAGGAAGAG
36811863 AGGGATTTAGAAATT
1 AGGGATTTAGAAATT
* *
36811878 AGGGATTTAGCATTT
1 AGGGATTTAGAAATT
* *
36811893 AGGAATTTCGAAAT
1 AGGGATTTAGAAAT
36811907 CTATTTTTAG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (15 bp):
AGGGATTTAGAAATT
Found at i:36812074 original size:41 final size:41
Alignment explanation
Indices: 36812023--36812200 Score: 216
Period size: 41 Copynumber: 4.3 Consensus size: 41
36812013 GGCGCTTATG
* * * * *
36812023 TCCGGCCTTTAGCAGCGCATTCTTATAAGCGCTGCTATTGC
1 TCCGACCTTTAGCGGCGCATTCTCATAAGCGCCGTTATTGC
* *
36812064 TCCGATCTTTAGCGGCGC-TTCTCCATAAGCACCGTTATTGC
1 TCCGACCTTTAGCGGCGCATTCT-CATAAGCGCCGTTATTGC
* * * *
36812105 TCAGACCTTTAGCGGCGCTTTCCCATAAGCGCCATTATTGC
1 TCCGACCTTTAGCGGCGCATTCTCATAAGCGCCGTTATTGC
*
36812146 TCCGACCTTTAGCGGCG-ATTTCTTATAAGCGCCGTTATTGC
1 TCCGACCTTTAGCGGCGCA-TTCTCATAAGCGCCGTTATTGC
36812187 TCCGACCTTTAGCG
1 TCCGACCTTTAGCG
36812201 ATGCTTATGT
Statistics
Matches: 117, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
40 4 0.03
41 110 0.94
42 3 0.03
ACGTcount: A:0.17, C:0.30, G:0.21, T:0.31
Consensus pattern (41 bp):
TCCGACCTTTAGCGGCGCATTCTCATAAGCGCCGTTATTGC
Found at i:36812238 original size:146 final size:146
Alignment explanation
Indices: 36812070--36812346 Score: 378
Period size: 146 Copynumber: 1.9 Consensus size: 146
36812060 TTGCTCCGAT
* *
36812070 CTTTAGCGGCGCTTCTCCATAAGCACCGTTATTGCTCAGACCTTTAGCGGCGCTT-TCCCATAAG
1 CTTTAGCGGCGCTTATCCATAAGCACCGCTATTGCTCAGACCTTTAGCGGCGCTTCT-CCATAAG
* * * * *
36812134 CGCCATTATTGCTCCGACCTTTAGCGGCGATTTCTTATAAGCGCCGTTATTGCTCCGACCTTTAG
65 CGCCATTATTACTCCGACCTTTAGCGACGATTTCATATAAGCGCCGCTATTGCTCCAACCTTTAG
36812199 CGATGCTTATGTCCGGC
130 CGATGCTTATGTCCGGC
* * * * * *
36812216 CTTTAGCGGCGCATTAT-TATAAGCGCTGCTATTGCTCCGATCTTTAGCGGTGCTTCTCCATAAG
1 CTTTAGCGGCGC-TTATCCATAAGCACCGCTATTGCTCAGACCTTTAGCGGCGCTTCTCCATAAG
* * *
36812280 CGCCGTTATTACTCCGACCTTTAGCGACGCTTTCATATAAGCGCCGCTATTGCTCCAATCTTTAG
65 CGCCATTATTACTCCGACCTTTAGCGACGATTTCATATAAGCGCCGCTATTGCTCCAACCTTTAG
36812345 CG
130 CG
36812347 GCCCTTTAGC
Statistics
Matches: 113, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
146 109 0.96
147 4 0.04
ACGTcount: A:0.18, C:0.29, G:0.21, T:0.32
Consensus pattern (146 bp):
CTTTAGCGGCGCTTATCCATAAGCACCGCTATTGCTCAGACCTTTAGCGGCGCTTCTCCATAAGC
GCCATTATTACTCCGACCTTTAGCGACGATTTCATATAAGCGCCGCTATTGCTCCAACCTTTAGC
GATGCTTATGTCCGGC
Found at i:36812252 original size:64 final size:64
Alignment explanation
Indices: 36812146--36812270 Score: 180
Period size: 64 Copynumber: 2.0 Consensus size: 64
36812136 CCATTATTGC
* *
36812146 TCCGACCTTTAGCGGCGATTTCTTATAAGCGCCGTTATTGCTCCGACCTTTAGCGATGCTTATG
1 TCCGACCTTTAGCGGCGATTTATTATAAGCGCCGCTATTGCTCCGACCTTTAGCGATGCTTATG
* * * *
36812210 TCCGGCCTTTAGCGGCGCA-TTATTATAAGCGCTGCTATTGCTCCGATCTTTAGCGGTGCTT
1 TCCGACCTTTAGCGGCG-ATTTATTATAAGCGCCGCTATTGCTCCGACCTTTAGCGATGCTT
36812271 CTCCATAAGC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 53 0.98
65 1 0.02
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.34
Consensus pattern (64 bp):
TCCGACCTTTAGCGGCGATTTATTATAAGCGCCGCTATTGCTCCGACCTTTAGCGATGCTTATG
Found at i:36812279 original size:41 final size:41
Alignment explanation
Indices: 36812216--36812353 Score: 145
Period size: 41 Copynumber: 3.4 Consensus size: 41
36812206 TATGTCCGGC
* * *
36812216 CTTTAGCGGCGCATT-ATTATAAGCGCTGCTATTGCTCCGAT
1 CTTTAGCGGCGCTTTCA-CATAAGCGCCGCTATTGCTCCGAT
* * * *
36812257 CTTTAGCGGTGCTTCTC-CATAAGCGCCGTTATTACTCCGAC
1 CTTTAGCGGCGCTT-TCACATAAGCGCCGCTATTGCTCCGAT
* * *
36812298 CTTTAGCGACGCTTTCATATAAGCGCCGCTATTGCTCCAAT
1 CTTTAGCGGCGCTTTCACATAAGCGCCGCTATTGCTCCGAT
*
36812339 CTTTAGCGGCCCTTT
1 CTTTAGCGGCGCTTT
36812354 AGCGGCGCTT
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
40 2 0.03
41 75 0.96
42 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.20, T:0.33
Consensus pattern (41 bp):
CTTTAGCGGCGCTTTCACATAAGCGCCGCTATTGCTCCGAT
Found at i:36812288 original size:187 final size:187
Alignment explanation
Indices: 36811966--36812348 Score: 622
Period size: 187 Copynumber: 2.0 Consensus size: 187
36811956 ATGTAAAAAT
*
36811966 TTTAGCGGCGATTTCTTATAAGCGCCGCTATTGCTCCGACCTTTAGCGGCGCTTATGTCCGGCCT
1 TTTAGCGGCGATTTCTTATAAGCGCCGCTATTGCTCCGACCTTTAGCGACGCTTATGTCCGGCCT
*
36812031 TTAGCAGCGCATTCTTATAAGCGCTGCTATTGCTCCGATCTTTAGCGGCGCTTCTCCATAAGCAC
66 TTAGCAGCGCATTATTATAAGCGCTGCTATTGCTCCGATCTTTAGCGGCGCTTCTCCATAAGCAC
* * * * *
36812096 CGTTATTGCTCAGACCTTTAGCGGCGCTTTCCCATAAGCGCCATTATTGCTCCGACC
131 CGTTATTACTCAGACCTTTAGCGACGCTTTCACATAAGCGCCACTATTGCTCCAACC
* *
36812153 TTTAGCGGCGATTTCTTATAAGCGCCGTTATTGCTCCGACCTTTAGCGATGCTTATGTCCGGCCT
1 TTTAGCGGCGATTTCTTATAAGCGCCGCTATTGCTCCGACCTTTAGCGACGCTTATGTCCGGCCT
* * *
36812218 TTAGCGGCGCATTATTATAAGCGCTGCTATTGCTCCGATCTTTAGCGGTGCTTCTCCATAAGCGC
66 TTAGCAGCGCATTATTATAAGCGCTGCTATTGCTCCGATCTTTAGCGGCGCTTCTCCATAAGCAC
* * * *
36812283 CGTTATTACTCCGACCTTTAGCGACGCTTTCATATAAGCGCCGCTATTGCTCCAATC
131 CGTTATTACTCAGACCTTTAGCGACGCTTTCACATAAGCGCCACTATTGCTCCAACC
36812340 TTTAGCGGC
1 TTTAGCGGC
36812349 CCTTTAGCGG
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
187 180 1.00
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.32
Consensus pattern (187 bp):
TTTAGCGGCGATTTCTTATAAGCGCCGCTATTGCTCCGACCTTTAGCGACGCTTATGTCCGGCCT
TTAGCAGCGCATTATTATAAGCGCTGCTATTGCTCCGATCTTTAGCGGCGCTTCTCCATAAGCAC
CGTTATTACTCAGACCTTTAGCGACGCTTTCACATAAGCGCCACTATTGCTCCAACC
Found at i:36812380 original size:52 final size:51
Alignment explanation
Indices: 36812297--36812399 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
36812287 ATTACTCCGA
*
36812297 CCTTTAGCGACGCTTTCATATAAGCGCCGCTATTGCTCCAATCTTTAGCGGC
1 CCTTTAGCGACGCTTTCACATAAGCGCCGCTATTGCT-CAATCTTTAGCGGC
* * * *
36812349 CCTTTAGCGGCGCTTTTC-CATAAGCGTCGCTATTGCTCTATCTTTTGCGGC
1 CCTTTAGCGACGC-TTTCACATAAGCGCCGCTATTGCTCAATCTTTAGCGGC
36812400 GTTTATGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 12 0.27
52 29 0.64
53 4 0.09
ACGTcount: A:0.16, C:0.30, G:0.20, T:0.34
Consensus pattern (51 bp):
CCTTTAGCGACGCTTTCACATAAGCGCCGCTATTGCTCAATCTTTAGCGGC
Found at i:36814686 original size:21 final size:22
Alignment explanation
Indices: 36814662--36814723 Score: 56
Period size: 21 Copynumber: 2.8 Consensus size: 22
36814652 CGATATAAGC
36814662 ATACAAGCTACCGATACATCT-
1 ATACAAGCTACCGATACATCTA
* * *
36814683 ATACTAAAACTACCGATACTTGTA
1 ATAC--AAGCTACCGATACATCTA
*
36814707 ATTC-AGCTACCGATACA
1 ATACAAGCTACCGATACA
36814724 ACTCAAGTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
21 15 0.47
23 14 0.44
24 3 0.09
ACGTcount: A:0.39, C:0.26, G:0.10, T:0.26
Consensus pattern (22 bp):
ATACAAGCTACCGATACATCTA
Found at i:36817460 original size:19 final size:20
Alignment explanation
Indices: 36817436--36817475 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
36817426 AACCTGCAAG
*
36817436 AGACAAG-AGAAAAGAACAA
1 AGACAAGAAGAAAAAAACAA
36817455 AGACAAGAAGAAAAAAACAA
1 AGACAAGAAGAAAAAAACAA
36817475 A
1 A
36817476 TAGCAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.72, C:0.10, G:0.17, T:0.00
Consensus pattern (20 bp):
AGACAAGAAGAAAAAAACAA
Found at i:36824765 original size:36 final size:38
Alignment explanation
Indices: 36824694--36824811 Score: 98
Period size: 45 Copynumber: 3.0 Consensus size: 38
36824684 CAAGCACATC
* * * *
36824694 ATATAGCTTAATTAATCAGATAATATTTA-CGATATC-G
1 ATATAGCATAATCAATCAAATAACATTTATC-ATATCAG
36824731 -TATAGCATAATCAATCAAATAACATTTATCATATCAAG
1 ATATAGCATAATCAATCAAATAACATTTATCATATC-AG
*
36824769 CATATCGCATATCATAATCAATCAAATAACATTTATCATATCA
1 ---AT---ATAGCATAATCAATCAAATAACATTTATCATATCA
36824812 AGCATATCGC
Statistics
Matches: 66, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
36 29 0.44
37 1 0.02
38 1 0.02
42 1 0.02
44 1 0.02
45 33 0.50
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.34
Consensus pattern (38 bp):
ATATAGCATAATCAATCAAATAACATTTATCATATCAG
Found at i:36824789 original size:45 final size:45
Alignment explanation
Indices: 36824725--36824838 Score: 210
Period size: 45 Copynumber: 2.5 Consensus size: 45
36824715 AATATTTACG
* *
36824725 ATATCGTATAGCATAATCAATCAAATAACATTTATCATATCAAGC
1 ATATCGCATATCATAATCAATCAAATAACATTTATCATATCAAGC
36824770 ATATCGCATATCATAATCAATCAAATAACATTTATCATATCAAGC
1 ATATCGCATATCATAATCAATCAAATAACATTTATCATATCAAGC
36824815 ATATCGCATATCATAATCAATCAA
1 ATATCGCATATCATAATCAATCAA
36824839 TTAATAGGGA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 67 1.00
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (45 bp):
ATATCGCATATCATAATCAATCAAATAACATTTATCATATCAAGC
Found at i:36825036 original size:45 final size:43
Alignment explanation
Indices: 36824986--36825126 Score: 167
Period size: 45 Copynumber: 3.2 Consensus size: 43
36824976 AGCGAAACGT
*
36824986 ATATCATGTGAGTTGCATAGTATAATCAATCAAATAATATTTACC
1 ATATCATGT-A-TTGCATAGCATAATCAATCAAATAATATTTACC
* *
36825031 ATATCATGCATATCGTATAGCATAATCAATCAAATAATATTTACC
1 ATATCATG--TATTGCATAGCATAATCAATCAAATAATATTTACC
* * *
36825076 ATATCATGCATAT-CGATAGCATACTTAATCAAATAATATTTACC
1 ATATCATGTAT-TGC-ATAGCATAATCAATCAAATAATATTTACC
36825120 ATATCAT
1 ATATCAT
36825127 AATTAATCAA
Statistics
Matches: 84, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
43 2 0.02
44 34 0.40
45 46 0.55
46 1 0.01
47 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (43 bp):
ATATCATGTATTGCATAGCATAATCAATCAAATAATATTTACC
Found at i:36825132 original size:29 final size:29
Alignment explanation
Indices: 36825095--36825155 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
36825085 ATATCGATAG
* *
36825095 CATACTTAATCAAATAATATTTACCATAT
1 CATAATTAATCAAATAATATTTACCACAT
*
36825124 CATAATTAATCAAATAGTATTTACCACAT
1 CATAATTAATCAAATAATATTTACCACAT
36825153 CAT
1 CAT
36825156 GCATATCGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.36
Consensus pattern (29 bp):
CATAATTAATCAAATAATATTTACCACAT
Found at i:36825190 original size:45 final size:45
Alignment explanation
Indices: 36825124--36826121 Score: 1382
Period size: 45 Copynumber: 22.5 Consensus size: 45
36825114 TTTACCATAT
* * *
36825124 CATAATTAATCAAATAGTATTTACCACATCATGCATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
*
36825169 CATAATCAATCAAATAATATTTACCATATCATACATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* *
36825214 CATAATCAATCAAATAACATTTACCATACCATGCATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* * *
36825259 CATAATCAATCCAATAATATTTACCATGTCATACATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
*
36825304 CATAATCAATCAAATAATATTTACCATGTCATGCATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* **
36825349 CATAATCAATTAAATAATATTTACCATATCATGCATATTATATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* * *
36825394 CATAATCAATCCAATAATATTTACCATATCATACATATCGTATAA
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* *
36825439 CATAATCAATCAAATAACATTTACCATACCATGCATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* * *
36825484 CATAATCAATCCAATAATATTTACCATGTCATACATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
*
36825529 CATAATCAATCAAATAATATTTACCATGTCATGCATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* **
36825574 CATAATCAATTAAATAATATTTACCATATCATGCATATTATATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* *
36825619 CATAATCAATCCAAA-AATATTTACCATATCATACATATCGTATAA
1 CATAATCAAT-CAAATAATATTTACCATATCATGCATATCGTATAG
* *
36825664 CATAATCAATCAAATAATATTTA-C-TA-CGT-C--AT-GCATA-
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* *
36825701 CATAATCAATCAAATAATATTTACCATATTATACATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
*
36825746 CATAATCAATCAAATAATATTTACC--AT-GT-C--AT-GTATA-
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* *
36825783 CATAATCAATCAAATAATATTTACCATATCATACATATCGCATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* * * ** *
36825828 CAAAATCAATCAAATAATATTTACCATGTAAAACATATCATATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
*
36825873 CATAATCAATCAAATAATATTTACCATATCATACATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* * *
36825918 CATAATCAATCAAATAATACTTATCATATTATGCATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* *
36825963 CATAATCAATCAAATCATATTTACCATATCATACATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
*
36826008 CATAATCAATCAAATAATATTTAACATATCATGCATATCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* * * *
36826053 AATACTTAATCAAATAATATTTACCATATCATGCATACCGTATAG
1 CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
* * *
36826098 TATAGTCAATTAAATAATATTTAC
1 CATAATCAATCAAATAATATTTAC
36826122 TGTTGAAGCC
Statistics
Matches: 850, Mismatches: 85, Indels: 36
0.88 0.09 0.04
Matches are distributed among these distances:
37 48 0.06
38 10 0.01
39 8 0.01
40 2 0.00
41 4 0.00
42 3 0.00
43 8 0.01
44 13 0.02
45 751 0.88
46 3 0.00
ACGTcount: A:0.43, C:0.18, G:0.06, T:0.33
Consensus pattern (45 bp):
CATAATCAATCAAATAATATTTACCATATCATGCATATCGTATAG
Found at i:36825735 original size:33 final size:36
Alignment explanation
Indices: 36825663--36825819 Score: 142
Period size: 37 Copynumber: 4.1 Consensus size: 36
36825653 ATATCGTATA
*
36825663 ACATAATCAATCAAATAATATTTACTACGTCATGCAT
1 ACATAATCAATCAAATAATATTTAC-ACATCATGCAT
* *
36825700 ACATAATCAATCAAATAATATTTACCATATTATACATATCGTAT
1 ACATAATCAATCAAATAATATTTA-C--A-CAT-C--AT-GCAT
*
36825744 AGCATAATCAATCAAATAATATTTAC-CATGTCATGTAT
1 A-CATAATCAATCAAATAATATTTACACA--TCATGCAT
36825782 ACATAATCAATCAAATAATATTTAC-CAT-AT-CAT
1 ACATAATCAATCAAATAATATTTACACATCATGCAT
36825815 ACATA
1 ACATA
36825820 TCGCATAGCA
Statistics
Matches: 105, Mismatches: 5, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
33 7 0.07
34 2 0.02
35 1 0.01
37 50 0.48
38 6 0.06
39 4 0.04
40 2 0.02
41 2 0.02
42 1 0.01
43 2 0.02
44 5 0.05
45 23 0.22
ACGTcount: A:0.45, C:0.17, G:0.04, T:0.34
Consensus pattern (36 bp):
ACATAATCAATCAAATAATATTTACACATCATGCAT
Found at i:36826200 original size:17 final size:17
Alignment explanation
Indices: 36826178--36826268 Score: 110
Period size: 17 Copynumber: 5.4 Consensus size: 17
36826168 ACCCATTTTT
* *
36826178 AATTTATTTTAAGTTTG
1 AATTTATTTTAAATTTA
* * *
36826195 AATTTAGTATAAACTTA
1 AATTTATTTTAAATTTA
*
36826212 AATTTATTCTAAATTTA
1 AATTTATTTTAAATTTA
*
36826229 AATTCATTTTAAATTTA
1 AATTTATTTTAAATTTA
*
36826246 AATTTATTTTAAATTTG
1 AATTTATTTTAAATTTA
36826263 AATTTA
1 AATTTA
36826269 ATTAAAAATT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 62 1.00
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.53
Consensus pattern (17 bp):
AATTTATTTTAAATTTA
Found at i:36826230 original size:6 final size:6
Alignment explanation
Indices: 36826204--36826269 Score: 50
Period size: 6 Copynumber: 11.5 Consensus size: 6
36826194 GAATTTAGTA
* * *
36826204 TAAACT TAAATT T--ATT CTAAATT TAAA-T TCATTT TAAATT TAAATT
1 TAAATT TAAATT TAAATT -TAAATT TAAATT TAAATT TAAATT TAAATT
* *
36826250 T-ATTT TAAATT TGAATT TAA
1 TAAATT TAAATT TAAATT TAA
36826270 TTAAAAATTA
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
4 3 0.07
5 8 0.17
6 32 0.70
7 3 0.07
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.52
Consensus pattern (6 bp):
TAAATT
Found at i:36826256 original size:11 final size:11
Alignment explanation
Indices: 36826209--36826269 Score: 52
Period size: 11 Copynumber: 5.4 Consensus size: 11
36826199 TAGTATAAAC
36826209 TTAAATTT-AT
1 TTAAATTTAAT
*
36826219 TCTAAATTTAAA
1 T-TAAATTTAAT
* *
36826231 TTCATTTTAAAT
1 TTAAATTT-AAT
*
36826243 TTAAATTTATT
1 TTAAATTTAAT
36826254 TTAAATTTGAAT
1 TTAAATTT-AAT
36826266 TTAA
1 TTAA
36826270 TTAAAAATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
10 1 0.03
11 22 0.56
12 16 0.41
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:36826281 original size:34 final size:34
Alignment explanation
Indices: 36826178--36826281 Score: 111
Period size: 34 Copynumber: 3.1 Consensus size: 34
36826168 ACCCATTTTT
* * *
36826178 AATTTATTTTAAGTTTGAATTT-AGTATAAACTTA
1 AATTTATTTTAAATTTGAATTTAATTA-AAAATTA
* * * * * *
36826212 AATTTATTCTAAATTTAAATTCATTTTAAATTTA
1 AATTTATTTTAAATTTGAATTTAATTAAAAATTA
36826246 AATTTATTTTAAATTTGAATTTAATTAAAAATTA
1 AATTTATTTTAAATTTGAATTTAATTAAAAATTA
36826280 AA
1 AA
36826282 AAGAAAGTTC
Statistics
Matches: 55, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
34 54 0.98
35 1 0.02
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (34 bp):
AATTTATTTTAAATTTGAATTTAATTAAAAATTA
Found at i:36828060 original size:30 final size:30
Alignment explanation
Indices: 36827986--36828060 Score: 71
Period size: 30 Copynumber: 2.5 Consensus size: 30
36827976 AAAGGTCCCT
* * **
36827986 AAACTGTC-CAAAAATCATATTTTGACCCTT
1 AAACT-TCTCAAAAATCACATTTTAACCCCA
* * *
36828016 ACACTTTTCCAAAATCACATTTTAACCCCA
1 AAACTTCTCAAAAATCACATTTTAACCCCA
36828046 AAACTTCTCAAAAAT
1 AAACTTCTCAAAAAT
36828061 TATTTTTTTT
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
29 1 0.03
30 33 0.97
ACGTcount: A:0.40, C:0.27, G:0.03, T:0.31
Consensus pattern (30 bp):
AAACTTCTCAAAAATCACATTTTAACCCCA
Found at i:36828208 original size:29 final size:29
Alignment explanation
Indices: 36827986--36828264 Score: 121
Period size: 29 Copynumber: 9.4 Consensus size: 29
36827976 AAAGGTCCCT
* * **
36827986 AAACTGTCCAAAAATCATATTTTGACCCTT
1 AAACT-TCCAAAAATCACATTTTTACCCCC
* * *
36828016 ACACTTTTCC-AAAATCACATTTTAACCCCA
1 AAAC--TTCCAAAAATCACATTTTTACCCCC
* ** * * *
36828046 AAACTTCTCAAAAATTATTTTTTTTCTCTC
1 AAACTTC-CAAAAATCACATTTTTACCCCC
* * * *
36828076 AAACTACTCAAAAATTAAAATTTTACCCCC
1 AAACTTC-CAAAAATCACATTTTTACCCCC
* * ** *
36828106 GAACTTCCAAAAATTACATTTTTTTCCTC
1 AAACTTCCAAAAATCACATTTTTACCCCC
* * * * * *
36828135 GAATTTCTAAAAATAACATTTTTACTCTC
1 AAACTTCCAAAAATCACATTTTTACCCCC
* * * *
36828164 GAACTTCTAAAGATCACATTTTTGCCCCC
1 AAACTTCCAAAAATCACATTTTTACCCCC
** *
36828193 AAACTTCCAAAAATCATGTTTTTA-CCCT
1 AAACTTCCAAAAATCACATTTTTACCCCC
* * * *
36828221 AAATTTTCCTAAAATGACATTTTTACCCCTA
1 AAA-CTTCCAAAAATCACATTTTTACCCC-C
36828252 AAACTTTCCAAAA
1 AAAC-TTCCAAAA
36828265 TTATGTTTTA
Statistics
Matches: 186, Mismatches: 55, Indels: 15
0.73 0.21 0.06
Matches are distributed among these distances:
28 9 0.05
29 98 0.53
30 65 0.35
31 13 0.07
32 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (29 bp):
AAACTTCCAAAAATCACATTTTTACCCCC
Found at i:36828265 original size:59 final size:59
Alignment explanation
Indices: 36828170--36828282 Score: 149
Period size: 59 Copynumber: 1.9 Consensus size: 59
36828160 TCTCGAACTT
* * *
36828170 CTAAAGATCACATTTTTGCCCCCAAACTTCCAAAAATCATGTTTTTACCCTAAATTTTC
1 CTAAAGATCACATTTTTACCCCAAAACTTCCAAAAATCATGTTTTAACCCTAAATTTTC
* *
36828229 CTAAA-ATGACATTTTTACCCCTAAAACTTTCC-AAAATTATGTTTTAACCCTAAA
1 CTAAAGATCACATTTTTACCCC-AAAAC-TTCCAAAAATCATGTTTTAACCCTAAA
36828283 CTCTCTGAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
58 14 0.30
59 29 0.62
60 4 0.09
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.35
Consensus pattern (59 bp):
CTAAAGATCACATTTTTACCCCAAAACTTCCAAAAATCATGTTTTAACCCTAAATTTTC
Found at i:36828736 original size:98 final size:98
Alignment explanation
Indices: 36828565--36828758 Score: 300
Period size: 98 Copynumber: 2.0 Consensus size: 98
36828555 AAATATTTAA
* *
36828565 AATCAAGGCAATATTCCTTTATTTCGAGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGCGATT
1 AATCAAGGCAATATTCCTTTATTTCGAGTTTTAAAAATTTGTGCCTTAACTTACTAGACGCGATT
* *
36828630 TATCTTCAAATCGGGATAATCGAATACCCTTAC
66 TATCTTCAAACCGAGATAATCGAATACCCTTAC
* **
36828663 AATCAAGGCAATGTTCCTTTATTTCTTGTTTTAAAAATTTGTGCCTTAACTTACTAGACGCGAAT
1 AATCAAGGCAATATTCCTTTATTTCGAGTTTTAAAAATTTGTGCCTTAACTTACTAGACGCG-AT
*
36828728 TT-TTTTCAAACCGAGATAATCGAATACCCTT
65 TTATCTTCAAACCGAGATAATCGAATACCCTT
36828759 TTTCAAGGTT
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
98 83 0.95
99 4 0.05
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (98 bp):
AATCAAGGCAATATTCCTTTATTTCGAGTTTTAAAAATTTGTGCCTTAACTTACTAGACGCGATT
TATCTTCAAACCGAGATAATCGAATACCCTTAC
Found at i:36840349 original size:39 final size:38
Alignment explanation
Indices: 36840305--36840721 Score: 303
Period size: 39 Copynumber: 10.8 Consensus size: 38
36840295 TGAAGCCATC
* * *
36840305 CAATCTTTTACCCCGAGCATGGGGCAGATCATTATCAG
1 CAATCTCTTACCCCGAGCATGGGGCAGATCATCACCAG
* ***
36840343 CAAATCTCTTACCCCGAGCCTGGGGCAGATTGCCACCAG
1 C-AATCTCTTACCCCGAGCATGGGGCAGATCATCACCAG
*
36840382 TCAATCTCTTACCCCAAGCATGGGGCAGATCATCACCAG
1 -CAATCTCTTACCCCGAGCATGGGGCAGATCATCACCAG
* * *
36840421 CCAATCTCTTACCCCGAGCCTGGGGCAGATTA-CAGCCATT
1 -CAATCTCTTACCCCGAGCATGGGGCAGATCATCA-CCA-G
* * * * * * ***
36840461 CTATCTTTTACCCTGAGCTTGGGGCAGATTACCATCTTT
1 CAATCTCTTACCCCGAGCATGGGGCAGATCATCA-CCAG
* *
36840500 CAATCTCTTACCCCGAGCCT-GGGCAGAT--TCCAGCCATT
1 CAATCTCTTACCCCGAGCATGGGGCAGATCAT-CA-CCA-G
* * *
36840538 CAATCTCTTACCCCGAGCCTGGGGCAGATTA-CAACCATT
1 CAATCTCTTACCCCGAGCATGGGGCAGATCATC-ACCA-G
* * *
36840577 CGATCTTTTACCCCGAGCTTGGGGCAGATCATCACCAG
1 CAATCTCTTACCCCGAGCATGGGGCAGATCATCACCAG
* *
36840615 TCAATCTCTTACCCCGAGC-TTGGGCAGATTGCAGTCATTC-G
1 -CAATCTCTTACCCCGAGCATGGGGCAGA-T-CA-TCA-CCAG
* * * *
36840656 --ATCTCTTACCCCGAGCTTAGGGTAGATCATCATCAG
1 CAATCTCTTACCCCGAGCATGGGGCAGATCATCACCAG
*
36840692 CCAATCTCTTACCCCGATCATGGGGCAGAT
1 -CAATCTCTTACCCCGAGCATGGGGCAGAT
36840722 TGCAGTCATT
Statistics
Matches: 310, Mismatches: 47, Indels: 43
0.77 0.12 0.11
Matches are distributed among these distances:
35 2 0.01
36 4 0.01
37 5 0.02
38 57 0.18
39 229 0.74
40 8 0.03
41 4 0.01
42 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (38 bp):
CAATCTCTTACCCCGAGCATGGGGCAGATCATCACCAG
Found at i:36840427 original size:78 final size:78
Alignment explanation
Indices: 36840305--36840721 Score: 368
Period size: 78 Copynumber: 5.4 Consensus size: 78
36840295 TGAAGCCATC
* * * *
36840305 CAATCTTTTACCCCGAGCATGGGGCAGATCATTATCAGCAAATCTCTTACCCCGAGCCTGGGGCA
1 CAATCTCTTACCCCGAGCATGGGGCAGATCATCACCAGCCAATCTCTTACCCCGAGCCTGGGGCA
36840370 GATTGCCA-CCAGT
66 GATT-CCAGCCAGT
*
36840383 CAATCTCTTACCCCAAGCATGGGGCAGATCATCACCAGCCAATCTCTTACCCCGAGCCTGGGGCA
1 CAATCTCTTACCCCGAGCATGGGGCAGATCATCACCAGCCAATCTCTTACCCCGAGCCTGGGGCA
* *
36840448 GATTACAGCCATT
66 GATTCCAGCCAGT
* * * * * * * ***
36840461 CTATCTTTTACCCTGAGCTTGGGGCAGATTACCATCTTTCAATCTCTTACCCCGAGCCT-GGGCA
1 CAATCTCTTACCCCGAGCATGGGGCAGATCATCACCAGCCAATCTCTTACCCCGAGCCTGGGGCA
*
36840525 GATTCCAGCCATT
66 GATTCCAGCCAGT
* * ** * * *
36840538 CAATCTCTTACCCCGAGCCTGGGGCAGATTA-CAACCATTCGATCTTTTACCCCGAGCTTGGGGC
1 CAATCTCTTACCCCGAGCATGGGGCAGATCATC-ACCAGCCAATCTCTTACCCCGAGCCTGGGGC
36840602 AGA-TCATCA-CCAGT
65 AGATTC--CAGCCAGT
* * ** * * *
36840616 CAATCTCTTACCCCGAGC-TTGGGCAGAT--TGCAGTCATTCGATCTCTTACCCCGAGCTTAGGG
1 CAATCTCTTACCCCGAGCATGGGGCAGATCAT-CA-CCAGCCAATCTCTTACCCCGAGCCTGGGG
* * *
36840678 TAGA-TCATCA-TCAGC
64 CAGATTC--CAGCCAGT
*
36840693 CAATCTCTTACCCCGATCATGGGGCAGAT
1 CAATCTCTTACCCCGAGCATGGGGCAGAT
36840722 TGCAGTCATT
Statistics
Matches: 292, Mismatches: 38, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
76 2 0.01
77 134 0.46
78 154 0.53
79 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (78 bp):
CAATCTCTTACCCCGAGCATGGGGCAGATCATCACCAGCCAATCTCTTACCCCGAGCCTGGGGCA
GATTCCAGCCAGT
Found at i:36840567 original size:116 final size:116
Alignment explanation
Indices: 36840346--36840671 Score: 440
Period size: 116 Copynumber: 2.8 Consensus size: 116
36840336 TTATCAGCAA
* * * *
36840346 ATCTCTTACCCCGAGCCTGGGGCAGATTGCCACCAGTCAATCTCTTACCCCAAGCATGGGGCAGA
1 ATCTTTTACCCCGAGCTTGGGGCAGATTACCACCAGTCAATCTCTTACCCCGAGCAT-GGGCAGA
** * *
36840411 -TCATCA-CCAGCCAATCTCTTACCCCGAGCCTGGGGCAGATTACAGCCATTCT
65 TTC--CAGCCATTCAATCTCTTACCCCGAGCCTGGGGCAGATTACAACCATTCG
* * ** *
36840463 ATCTTTTACCCTGAGCTTGGGGCAGATTACCATCTTTCAATCTCTTACCCCGAGCCTGGGCAGAT
1 ATCTTTTACCCCGAGCTTGGGGCAGATTACCACCAGTCAATCTCTTACCCCGAGCATGGGCAGAT
36840528 TCCAGCCATTCAATCTCTTACCCCGAGCCTGGGGCAGATTACAACCATTCG
66 TCCAGCCATTCAATCTCTTACCCCGAGCCTGGGGCAGATTACAACCATTCG
* * *
36840579 ATCTTTTACCCCGAGCTTGGGGCAGATCATCACCAGTCAATCTCTTACCCCGAGCTTGGGCAGAT
1 ATCTTTTACCCCGAGCTTGGGGCAGATTACCACCAGTCAATCTCTTACCCCGAGCATGGGCAGAT
* * *
36840644 TGCAGTCATTCGATCTCTTACCCCGAGC
66 TCCAGCCATTCAATCTCTTACCCCGAGC
36840672 TTAGGGTAGA
Statistics
Matches: 184, Mismatches: 23, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
115 2 0.01
116 132 0.72
117 50 0.27
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.25
Consensus pattern (116 bp):
ATCTTTTACCCCGAGCTTGGGGCAGATTACCACCAGTCAATCTCTTACCCCGAGCATGGGCAGAT
TCCAGCCATTCAATCTCTTACCCCGAGCCTGGGGCAGATTACAACCATTCG
Found at i:36840704 original size:116 final size:114
Alignment explanation
Indices: 36840298--36840722 Score: 429
Period size: 116 Copynumber: 3.7 Consensus size: 114
36840288 GACAGATTGA
* * * * * * *
36840298 AGCCATCCAATCTTTTACCCCGAGCATGGGGCAGATCATTATCAGCAAATCTCTTACCCCGAGCC
1 AGCCATTCAATCTCTTACCCCGAGCCTGGGGCAGATCA-CACCAGCCAATCTCTTACCCCGAGCT
* * *
36840363 TGGGGCAGATTGCCACCAGTCAATCTCTTACCCCAAGCATGGGGCAGATCATC
65 TGGGGCAGATTACCACCAGTCAATCTCTTACCCCGAGC-TTGGGCAGAT--TC
** * ** * * *
36840416 A-CCAGCCAATCTCTTACCCCGAGCCTGGGGCAGATTACAGCCATTCTATCTTTTACCCTGAGCT
1 AGCCATTCAATCTCTTACCCCGAGCCTGGGGCAGATCACA-CCAGCCAATCTCTTACCCCGAGCT
* ** *
36840480 TGGGGCAGATTACCATCTTTCAATCTCTTACCCCGAGCCTGGGCAGATTCC
65 TGGGGCAGATTACCACCAGTCAATCTCTTACCCCGAGCTTGGGCAGATT-C
* ** * *
36840531 AGCCATTCAATCTCTTACCCCGAGCCTGGGGCAGATTACAACCATTCGATCTTTTACCCCGAGCT
1 AGCCATTCAATCTCTTACCCCGAGCCTGGGGCAGATCAC-ACCAGCCAATCTCTTACCCCGAGCT
* *
36840596 TGGGGCAGATCATCACCAGTCAATCTCTTACCCCGAGCTTGGGCAGATTGC
65 TGGGGCAGATTACCACCAGTCAATCTCTTACCCCGAGCTTGGGCAGATT-C
* * * * * * * *
36840647 AGTCATTCGATCTCTTACCCCGAGCTTAGGGTAGATCATCATCAGCCAATCTCTTACCCCGATCA
1 AGCCATTCAATCTCTTACCCCGAGCCTGGGGCAGATCA-CACCAGCCAATCTCTTACCCCGAGCT
36840712 TGGGGCAGATT
65 TGGGGCAGATT
36840723 GCAGTCATTC
Statistics
Matches: 257, Mismatches: 45, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
114 1 0.00
115 2 0.01
116 170 0.66
117 83 0.32
118 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (114 bp):
AGCCATTCAATCTCTTACCCCGAGCCTGGGGCAGATCACACCAGCCAATCTCTTACCCCGAGCTT
GGGGCAGATTACCACCAGTCAATCTCTTACCCCGAGCTTGGGCAGATTC
Found at i:36841199 original size:17 final size:17
Alignment explanation
Indices: 36841177--36841267 Score: 92
Period size: 17 Copynumber: 5.4 Consensus size: 17
36841167 ATCCATTTTT
* *
36841177 AATTTATTTTAAGTTTG
1 AATTTATTTTAAATTTA
* ** *
36841194 AATTTAGTACAAACTTA
1 AATTTATTTTAAATTTA
* *
36841211 AATTTATTCTGAATTTA
1 AATTTATTTTAAATTTA
*
36841228 AATTCATTTTAAATTTA
1 AATTTATTTTAAATTTA
*
36841245 AATTTATTTTAAATTTG
1 AATTTATTTTAAATTTA
36841262 AATTTA
1 AATTTA
36841268 ATTAAAAATT
Statistics
Matches: 58, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 58 1.00
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.52
Consensus pattern (17 bp):
AATTTATTTTAAATTTA
Found at i:36841280 original size:34 final size:34
Alignment explanation
Indices: 36841177--36841280 Score: 102
Period size: 34 Copynumber: 3.1 Consensus size: 34
36841167 ATCCATTTTT
* * *
36841177 AATTTATTTTAAGTTTGAATTT-AGTACAAACTTA
1 AATTTATTTTAAATTTGAATTTAATTA-AAAATTA
* * * * * * *
36841211 AATTTATTCTGAATTTAAATTCATTTTAAATTTA
1 AATTTATTTTAAATTTGAATTTAATTAAAAATTA
36841245 AATTTATTTTAAATTTGAATTTAATTAAAAATTA
1 AATTTATTTTAAATTTGAATTTAATTAAAAATTA
36841279 AA
1 AA
36841281 AAGAAAGTTC
Statistics
Matches: 53, Mismatches: 16, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
34 52 0.98
35 1 0.02
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (34 bp):
AATTTATTTTAAATTTGAATTTAATTAAAAATTA
Found at i:36843076 original size:30 final size:30
Alignment explanation
Indices: 36843042--36843113 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
36843032 ACACTTTTCC
36843042 AAAATCAC-TTTCTGA-CCCTTGAACTTCTTA
1 AAAATCACATTTCTGATCCC--GAACTTCTTA
* *
36843072 AAAATTACATTTTTGATCCCGAACTTCTTA
1 AAAATCACATTTCTGATCCCGAACTTCTTA
*
36843102 AAAATTACATTT
1 AAAATCACATTT
36843114 TTCTCCGAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
30 29 0.76
31 6 0.16
32 3 0.08
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.39
Consensus pattern (30 bp):
AAAATCACATTTCTGATCCCGAACTTCTTA
Found at i:36843114 original size:30 final size:28
Alignment explanation
Indices: 36843062--36843198 Score: 154
Period size: 27 Copynumber: 4.9 Consensus size: 28
36843052 TCTGACCCTT
* *
36843062 GAACTTCTTAAAAATTACATTTTTGATCCC
1 GAACTTCTCAAAAATTACATTTTT-CT-CC
*
36843092 GAACTTCTTAAAAATTACATTTTTCTCC
1 GAACTTCTCAAAAATTACATTTTTCTCC
*
36843120 GAACTTC-CAGAAATTACATTTTTCTCC
1 GAACTTCTCAAAAATTACATTTTTCTCC
*
36843147 GAACTT-TCAAAAATTACATTTTTGCCCTC
1 GAACTTCTCAAAAATTACATTTTT-CTC-C
* *
36843176 GAACTTC-CAGAAATCACATTTTT
1 GAACTTCTCAAAAATTACATTTTT
36843199 GCCCTTAAAC
Statistics
Matches: 96, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
27 39 0.41
28 11 0.11
29 22 0.23
30 24 0.25
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (28 bp):
GAACTTCTCAAAAATTACATTTTTCTCC
Found at i:36843189 original size:29 final size:28
Alignment explanation
Indices: 36843062--36843285 Score: 211
Period size: 29 Copynumber: 7.8 Consensus size: 28
36843052 TCTGACCCTT
* *
36843062 GAACTTCTTAAAAATTACATTTTTGATCCC
1 GAACTTC-CAAAAATTACATTTTTG-CCCC
* *
36843092 GAACTTCTTAAAAATTACATTTTT-CTCC
1 GAACTTC-CAAAAATTACATTTTTGCCCC
* *
36843120 GAACTTCCAGAAATTACATTTTT-CTCC
1 GAACTTCCAAAAATTACATTTTTGCCCC
*
36843147 GAACTTTCAAAAATTACATTTTTGCCCTC
1 GAACTTCCAAAAATTACATTTTTGCCC-C
* * *
36843176 GAACTTCCAGAAATCACATTTTTGCCCTT
1 GAACTTCCAAAAATTACATTTTTGCCC-C
* * *
36843205 AAACCTCCAAAAATTATATTTTTGCCCTC
1 GAACTTCCAAAAATTACATTTTTGCCC-C
*
36843234 GAACTTCC-AAAGTTCACATTTTTGCCCCC
1 GAACTTCCAAAAATT-ACATTTTTG-CCCC
* *
36843263 GAACTTCCAAAAATCACGTTTTT
1 GAACTTCCAAAAATTACATTTTT
36843286 ACCTTGAATT
Statistics
Matches: 165, Mismatches: 24, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
27 39 0.24
28 16 0.10
29 79 0.48
30 31 0.19
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (28 bp):
GAACTTCCAAAAATTACATTTTTGCCCC
Found at i:36843326 original size:87 final size:88
Alignment explanation
Indices: 36843148--36843332 Score: 198
Period size: 87 Copynumber: 2.1 Consensus size: 88
36843138 TTTTTCTCCG
* * * * *
36843148 AACTTTCAAAAATT-ACATTTTTGCCCTCGAACTTCCAGAAATCACATTTTTGCCCTTAAACCTC
1 AACTTTCCAAAGTTCACATTTTTGCCCCCGAACTTCCAAAAATCACATTTTTGACCTTAAACCTC
* * **
36843212 CAAAAATTATATTTTTGCCCTCG
66 CAAAAATGATATTTTTCCCCTAA
* ***
36843235 AAC-TTCCAAAGTTCACATTTTTGCCCCCGAACTTCCAAAAATCACGTTTTT-ACCTTGAATTTT
1 AACTTTCCAAAGTTCACATTTTTGCCCCCGAACTTCCAAAAATCACATTTTTGACCTT-AAACCT
*
36843298 CCTAAAATGACT-TTTTTCCCCTAA
65 CCAAAAATGA-TATTTTTCCCCTAA
36843322 AACTTTCCAAA
1 AACTTTCCAAA
36843333 ATTGCATCTT
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
86 12 0.15
87 60 0.75
88 8 0.10
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (88 bp):
AACTTTCCAAAGTTCACATTTTTGCCCCCGAACTTCCAAAAATCACATTTTTGACCTTAAACCTC
CAAAAATGATATTTTTCCCCTAA
Found at i:36843759 original size:98 final size:98
Alignment explanation
Indices: 36843584--36843781 Score: 310
Period size: 98 Copynumber: 2.0 Consensus size: 98
36843574 TCCAAAGTAT
*
36843584 TTAAAATCGAGGCAATATTCCTTTATTTCAGGTTTTAAAAATTTGTGCCTTAACTTACCAGACGC
1 TTAAAATCGAGGCAATATTCCTTTATTTCAGGTTTTAAAAATTTGTACCTTAACTTACCAGACGC
*
36843649 GATTTTTCTTCAAATCGGGATAATCGAATACCC
66 GATTTTTCTTCAAACCGGGATAATCGAATACCC
* * * *
36843682 TTAAAATCGAGGCAATATTCTTTTATTTC-GTGTTTTGAAAATTTGTACCTTAACTTACTAGGCG
1 TTAAAATCGAGGCAATATTCCTTTATTTCAG-GTTTTAAAAATTTGTACCTTAACTTACCAGACG
36843746 CGAATTTTT-TTCAAACCGGGATAATCGAATACCC
65 CG-ATTTTTCTTCAAACCGGGATAATCGAATACCC
36843780 TT
1 TT
36843782 TTTCAAGGTT
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
97 1 0.01
98 85 0.92
99 6 0.07
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (98 bp):
TTAAAATCGAGGCAATATTCCTTTATTTCAGGTTTTAAAAATTTGTACCTTAACTTACCAGACGC
GATTTTTCTTCAAACCGGGATAATCGAATACCC
Found at i:36844769 original size:29 final size:29
Alignment explanation
Indices: 36844737--36844865 Score: 145
Period size: 29 Copynumber: 4.4 Consensus size: 29
36844727 AAATAATGGC
* *
36844737 AAAATTATAAAATCTAGAAAACCAGTGGA
1 AAAACTATAAAATCTGGAAAACCAGTGGA
*
36844766 AAAACTGA-AAAATCTGGAAAACCAAT-GA
1 AAAACT-ATAAAATCTGGAAAACCAGTGGA
* * * *
36844794 CAAAACTGTAAAATCTGGAACACTAGTGGT
1 -AAAACTATAAAATCTGGAAAACCAGTGGA
* *
36844824 GAAACTATAAAATCTGGAAAACCAGTGGC
1 AAAACTATAAAATCTGGAAAACCAGTGGA
36844853 AAAACTATAAAAT
1 AAAACTATAAAAT
36844866 AGCTGCATTT
Statistics
Matches: 82, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
28 2 0.02
29 78 0.95
30 2 0.02
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (29 bp):
AAAACTATAAAATCTGGAAAACCAGTGGA
Found at i:36844798 original size:58 final size:58
Alignment explanation
Indices: 36844731--36844865 Score: 173
Period size: 58 Copynumber: 2.3 Consensus size: 58
36844721 TTTGAAAAAT
*
36844731 AATGGCAAAATTATAAAATCTAGAAAACCAGTGGAAAAACTGA-AAAATCTGGAAAACC
1 AATGGCAAAACTATAAAATCTAGAAAACCAGTGGAAAAACT-ATAAAATCTGGAAAACC
* * * * * **
36844789 AATGACAAAACTGTAAAATCTGGAACACTAGTGGTGAAACTATAAAATCTGGAAAACC
1 AATGGCAAAACTATAAAATCTAGAAAACCAGTGGAAAAACTATAAAATCTGGAAAACC
*
36844847 AGTGGCAAAACTATAAAAT
1 AATGGCAAAACTATAAAAT
36844866 AGCTGCATTT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 1 0.02
58 64 0.98
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.19
Consensus pattern (58 bp):
AATGGCAAAACTATAAAATCTAGAAAACCAGTGGAAAAACTATAAAATCTGGAAAACC
Found at i:36860660 original size:86 final size:86
Alignment explanation
Indices: 36860510--36860685 Score: 334
Period size: 86 Copynumber: 2.0 Consensus size: 86
36860500 ATTTTCCAGT
*
36860510 ATATTTTGGACGTTTGATCCCTGCGTTCGAGCTTTTCCTTACTGCAAGCCATTTGTCCAGGTAGA
1 ATATTTTGGACGTTTGATCCCTACGTTCGAGCTTTTCCTTACTGCAAGCCATTTGTCCAGGTAGA
36860575 TGGGACCTGGCTATACGGGAA
66 TGGGACCTGGCTATACGGGAA
*
36860596 ATATTTTGGACGTTTGATCCCTACGTTCGAGCTTTTCCTTACTGCAAGCCATTTGTCCATGTAGA
1 ATATTTTGGACGTTTGATCCCTACGTTCGAGCTTTTCCTTACTGCAAGCCATTTGTCCAGGTAGA
36860661 TGGGACCTGGCTATACGGGAA
66 TGGGACCTGGCTATACGGGAA
36860682 ATAT
1 ATAT
36860686 ACGCAGATCC
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.34
Consensus pattern (86 bp):
ATATTTTGGACGTTTGATCCCTACGTTCGAGCTTTTCCTTACTGCAAGCCATTTGTCCAGGTAGA
TGGGACCTGGCTATACGGGAA
Found at i:36866897 original size:17 final size:17
Alignment explanation
Indices: 36866875--36866910 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
36866865 TCATATTGGC
36866875 TCGGTGTGTTTCCTCAT
1 TCGGTGTGTTTCCTCAT
36866892 TCGGTGTGTTTCCTCAT
1 TCGGTGTGTTTCCTCAT
36866909 TC
1 TC
36866911 ACCGACTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.06, C:0.25, G:0.22, T:0.47
Consensus pattern (17 bp):
TCGGTGTGTTTCCTCAT
Found at i:36867257 original size:22 final size:23
Alignment explanation
Indices: 36867232--36867280 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
36867222 AAATTTTACC
36867232 ATTTAAATAAAAATTATTT-TAA
1 ATTTAAATAAAAATTATTTCTAA
* **
36867254 ATTT-TATATTAATTATTTCTAA
1 ATTTAAATAAAAATTATTTCTAA
36867276 ATTTA
1 ATTTA
36867281 TTATATAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
ATTTAAATAAAAATTATTTCTAA
Found at i:36867269 original size:21 final size:22
Alignment explanation
Indices: 36867243--36867295 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 22
36867233 TTTAAATAAA
36867243 AATTATTTTAAA-TT-TTATATT
1 AATTATTTTAAATTTATTATA-T
36867264 AATTATTTCTAAATTTATTATAT
1 AATTATTT-TAAATTTATTATAT
36867287 AATTATTTT
1 AATTATTTT
36867296 TACCCGTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 8 0.28
22 5 0.17
23 11 0.38
24 5 0.17
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
AATTATTTTAAATTTATTATAT
Found at i:36867795 original size:12 final size:12
Alignment explanation
Indices: 36867774--36867805 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
36867764 CTAACAAATT
36867774 AAAA-AAATTTA
1 AAAATAAATTTA
36867785 AAAATAAATTTA
1 AAAATAAATTTA
36867797 AAAATAAAT
1 AAAATAAAT
36867806 ACATTACCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
AAAATAAATTTA
Found at i:36870095 original size:58 final size:57
Alignment explanation
Indices: 36870021--36870131 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 57
36870011 AAAAAAGTAA
* * *
36870021 TTTTTTTGTCGTCGTGCTGTCT-ACGACATTGGTGTTAGATAGTTGAAAAAGTTAAAT
1 TTTTTTTGTCGCCGTGCTGTCTGACGACACTGGTGTCAGATAGTT-AAAAAGTTAAAT
* * *
36870078 TTTTTTGTGTCGCCGTGCTGTTTGGCGGCACTGGTGTCAGATAGTTAAAAAGTT
1 TTTTTT-TGTCGCCGTGCTGTCTGACGACACTGGTGTCAGATAGTTAAAAAGTT
36870132 GTTTTTTATG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 6 0.13
58 22 0.48
59 18 0.39
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.41
Consensus pattern (57 bp):
TTTTTTTGTCGCCGTGCTGTCTGACGACACTGGTGTCAGATAGTTAAAAAGTTAAAT
Found at i:36871533 original size:19 final size:19
Alignment explanation
Indices: 36871498--36871539 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
36871488 TTGCCCCATT
36871498 TTTTTTCCCTTTCTCTT-C
1 TTTTTTCCCTTTCTCTTGC
* *
36871516 TTTTTTCACTTTTTTCTTGC
1 TTTTTTC-CCTTTCTCTTGC
36871536 TTTT
1 TTTT
36871540 CCTTCTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 7 0.35
19 8 0.40
20 5 0.25
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTTTTCCCTTTCTCTTGC
Found at i:36871950 original size:16 final size:16
Alignment explanation
Indices: 36871929--36871961 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
36871919 AGAGTTTAAT
36871929 TATTATGACATAAGTG
1 TATTATGACATAAGTG
*
36871945 TATTATGATATAAGTG
1 TATTATGACATAAGTG
36871961 T
1 T
36871962 GTTAGATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.42
Consensus pattern (16 bp):
TATTATGACATAAGTG
Found at i:36877612 original size:30 final size:29
Alignment explanation
Indices: 36877549--36877787 Score: 230
Period size: 29 Copynumber: 8.0 Consensus size: 29
36877539 TTTAAAAGGT
* *
36877549 CCCTAAACTTTCCAAAAAACCATATTTTGAC
1 CCCTAAACTTTCC--AAAATCACATTTTGAC
* * *
36877580 CCCTAAAATTTTCCAAAATTACATTTTAAC
1 CCCT-AAACTTTCCAAAATCACATTTTGAC
* *
36877610 CCCTAAATTTTCTCAAAATCATATTTTGAC
1 CCCTAAACTTTC-CAAAATCACATTTTGAC
* * * *
36877640 CCGTAAACTTCCCAAAATCATATTTTAAC
1 CCCTAAACTTTCCAAAATCACATTTTGAC
* *
36877669 CCTTAAACTTCCCAAAATCACATTTTGAC
1 CCCTAAACTTTCCAAAATCACATTTTGAC
* *
36877698 CCCTAAGCTTTCCCAAAATCATATTTTGA-
1 CCCTAAACTTT-CCAAAATCACATTTTGAC
* *
36877727 CCCTAAACTTTCCAAAAGTTACATTTTAAC
1 CCCTAAACTTTCCAAAA-TCACATTTTGAC
*
36877757 CTCTAAACTTTCCAAAAATTCA-ATTTTGAC
1 CCCTAAACTTTCC-AAAA-TCACATTTTGAC
36877787 C
1 C
36877788 ATAAATTCTC
Statistics
Matches: 175, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
28 6 0.03
29 76 0.43
30 75 0.43
31 10 0.06
32 8 0.05
ACGTcount: A:0.36, C:0.27, G:0.03, T:0.34
Consensus pattern (29 bp):
CCCTAAACTTTCCAAAATCACATTTTGAC
Found at i:36877658 original size:29 final size:29
Alignment explanation
Indices: 36877549--36877787 Score: 212
Period size: 30 Copynumber: 8.0 Consensus size: 29
36877539 TTTAAAAGGT
* *
36877549 CCCTAAACTTTCCAAAAAACCATATTTTGAC
1 CCCTAAAC-TTCC-CAAAATCATATTTTGAC
* * * * *
36877580 CCCTAAAATTTTCCAAAATTACATTTTAAC
1 CCCT-AAACTTCCCAAAATCATATTTTGAC
* *
36877610 CCCTAAATTTTCTCAAAATCATATTTTGAC
1 CCCTAAA-CTTCCCAAAATCATATTTTGAC
* *
36877640 CCGTAAACTTCCCAAAATCATATTTTAAC
1 CCCTAAACTTCCCAAAATCATATTTTGAC
* *
36877669 CCTTAAACTTCCCAAAATCACATTTTGAC
1 CCCTAAACTTCCCAAAATCATATTTTGAC
*
36877698 CCCTAAGCTTTCCCAAAATCATATTTTGA-
1 CCCTAAAC-TTCCCAAAATCATATTTTGAC
* * * *
36877727 CCCTAAACTTTCCAAAAGTTACATTTTAAC
1 CCCTAAACTTCCCAAAA-TCATATTTTGAC
* *
36877757 CTCTAAACTTTCCAAAAATTCA-ATTTTGAC
1 CCCTAAAC-TTCCCAAAA-TCATATTTTGAC
36877787 C
1 C
36877788 ATAAATTCTC
Statistics
Matches: 169, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
28 8 0.05
29 69 0.41
30 73 0.43
31 16 0.09
32 3 0.02
ACGTcount: A:0.36, C:0.27, G:0.03, T:0.34
Consensus pattern (29 bp):
CCCTAAACTTCCCAAAATCATATTTTGAC
Found at i:36877775 original size:59 final size:58
Alignment explanation
Indices: 36877549--36877792 Score: 213
Period size: 59 Copynumber: 4.1 Consensus size: 58
36877539 TTTAAAAGGT
* * * * * * * * *
36877549 CCCTAAACTTTCCAAAAAACCATATTTTGACCCCTAAAATTTTCCAAAATTACATTTTAA
1 CCCTAAAC-TTCC-CAAAATCACATTTTAACCCCTAAACTTTCCCAAAATCATATTTTGA
* * * * * *
36877609 CCCCTAAATTTTCTCAAAATCATATTTTGACCCGTAAAC-TTCCCAAAATCATATTTTAA
1 -CCCTAAA-CTTCCCAAAATCACATTTTAACCCCTAAACTTTCCCAAAATCATATTTTGA
* *
36877668 CCCTTAAACTTCCCAAAATCACATTTTGACCCCTAAGCTTTCCCAAAATCATATTTTGA
1 CCC-TAAACTTCCCAAAATCACATTTTAACCCCTAAACTTTCCCAAAATCATATTTTGA
* * * *
36877727 CCCTAAACTTTCCAAAAGTTACATTTTAACCTCTAAACTTTCCAAAAATTCA-ATTTTGA
1 CCCTAAACTTCCCAAAA-TCACATTTTAACCCCTAAACTTTCCCAAAA-TCATATTTTGA
*
36877786 CCATAAA
1 CCCTAAA
36877793 TTCTCCGAAA
Statistics
Matches: 156, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
58 41 0.26
59 81 0.52
60 24 0.15
61 10 0.06
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.34
Consensus pattern (58 bp):
CCCTAAACTTCCCAAAATCACATTTTAACCCCTAAACTTTCCCAAAATCATATTTTGA
Found at i:36902125 original size:21 final size:21
Alignment explanation
Indices: 36902101--36902141 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36902091 GACCCAAACT
* *
36902101 GTTGATTGTTGACCGTTGACA
1 GTTGACTGTTGACCATTGACA
36902122 GTTGACTGTTGACCATTGAC
1 GTTGACTGTTGACCATTGAC
36902142 TTTAACCGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.37
Consensus pattern (21 bp):
GTTGACTGTTGACCATTGACA
Found at i:36903219 original size:21 final size:20
Alignment explanation
Indices: 36903195--36903233 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
36903185 ATTTAATTTA
*
36903195 TTTTGTTATTTTACTTTTGGG
1 TTTTGTTATTATA-TTTTGGG
*
36903216 TTTTTTTATTATATTTTG
1 TTTTGTTATTATATTTTG
36903234 TTAAATATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.13, C:0.03, G:0.13, T:0.72
Consensus pattern (20 bp):
TTTTGTTATTATATTTTGGG
Found at i:36910035 original size:12 final size:11
Alignment explanation
Indices: 36910017--36910067 Score: 59
Period size: 12 Copynumber: 4.5 Consensus size: 11
36910007 ATTTTGCTTG
36910017 TTCTGTCTCTA
1 TTCTGTCTCTA
*
36910028 TCTCTGTCTCTG
1 T-TCTGTCTCTA
36910040 TTCTG-CTTCTA
1 TTCTGTC-TCTA
36910051 TCTCTGTCTCTA
1 T-TCTGTCTCTA
36910063 TTCTG
1 TTCTG
36910068 CTTCTGTGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
10 1 0.03
11 13 0.38
12 19 0.56
13 1 0.03
ACGTcount: A:0.06, C:0.29, G:0.12, T:0.53
Consensus pattern (11 bp):
TTCTGTCTCTA
Found at i:36910050 original size:23 final size:23
Alignment explanation
Indices: 36910015--36910072 Score: 91
Period size: 23 Copynumber: 2.5 Consensus size: 23
36910005 TTATTTTGCT
36910015 TGTTCTG-TCTCTATCTCTGTCTC
1 TGTTCTGCT-TCTATCTCTGTCTC
36910038 TGTTCTGCTTCTATCTCTGTCTC
1 TGTTCTGCTTCTATCTCTGTCTC
*
36910061 TATTCTGCTTCT
1 TGTTCTGCTTCT
36910073 GTGTTCTCTC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
23 32 0.97
24 1 0.03
ACGTcount: A:0.05, C:0.29, G:0.12, T:0.53
Consensus pattern (23 bp):
TGTTCTGCTTCTATCTCTGTCTC
Found at i:36910072 original size:29 final size:29
Alignment explanation
Indices: 36910017--36910073 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
36910007 ATTTTGCTTG
* *
36910017 TTCTGTCTCTATCTCTGTCTCTGTTCTGC
1 TTCTATCTCTATCTCTATCTCTGTTCTGC
*
36910046 TTCTATCTCTGTCTCTAT-TCTGCTTCTG
1 TTCTATCTCTATCTCTATCTCTG-TTCTG
36910074 TGTTCTCTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.05, C:0.30, G:0.12, T:0.53
Consensus pattern (29 bp):
TTCTATCTCTATCTCTATCTCTGTTCTGC
Found at i:36910920 original size:39 final size:39
Alignment explanation
Indices: 36910876--36911383 Score: 523
Period size: 39 Copynumber: 13.0 Consensus size: 39
36910866 CATTGGGTTT
* *
36910876 TGGTTACAATCTGCCCCATGATCGGGGTAAGAGATTAGA
1 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
* * * *
36910915 TGGTTACGATCTGTCCCATGATCGGGGTAAGAGATTGAA
1 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
** * * * *
36910954 TGGTTTTTAATTTACCTCATGATCGGGGTAAGAGTTTGGA
1 TGG-TTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
* * *
36910994 TGGTTGCGATCTGCTCCATGATCGGGGTAAGAGATCGGA
1 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
* * *
36911033 TGATTGCAATCTGCCTCATGATCGGGGTAAGAGATTAGA
1 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
36911072 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
1 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
* * * * * *
36911111 TGGTTGCAATCTACCTCATGATCAGGGTAAAAGATTAGT
1 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
* ** * * *
36911150 TGATTGTGATCTGCCCCATTATCGGGGTAAAAGATTGGC
1 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
*** * * * **
36911189 TAACTGCGATCTGCTCCATGATCGAGGTAAGAGATCAGA
1 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
* *
36911228 TGGTTACAATCTGCTCCATGATCGGGGTAAGAGATTGGA
1 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
* * *
36911267 TGGTTGCAATCTGCCCCATGATCGAGGTAAAAGATTGGC
1 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
** ** *
36911306 TGACTGTGATCTGCCCCATGATCGGGGTAAAAGATTGG-
1 TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
* * *
36911344 TGTGTTTTCAATCTTCCCCATGATCGGGGTAAGGGATTGG
1 TG-G-TTGCAATCTGCCCCATGATCGGGGTAAGAGATTGG
36911384 TGTAGCTTCG
Statistics
Matches: 384, Mismatches: 82, Indels: 5
0.82 0.17 0.01
Matches are distributed among these distances:
38 2 0.01
39 324 0.84
40 58 0.15
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (39 bp):
TGGTTGCAATCTGCCCCATGATCGGGGTAAGAGATTGGA
Found at i:36911482 original size:49 final size:49
Alignment explanation
Indices: 36911410--36912084 Score: 345
Period size: 49 Copynumber: 13.9 Consensus size: 49
36911400 TTTATTGTAA
* * * * * *
36911410 CTTCGAGGTAGAAGATTCACCGTTACGACTTCAACCTTTCCCTTCATAT
1 CTTCGTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCTCCATAT
* * * *
36911459 CTTCGTGGTACTAGATTCGCCGTTGCGGCTTCAATCTTT-CCTAGCATGT
1 CTTCGTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCT-CCATAT
* * * * * * *
36911508 TTTTGAGGTACAAGGTTCACCGTTGCGGCTTCAACCTTTCCCTCCATAT
1 CTTCGTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCTCCATAT
* * * * * * *
36911557 CTTCGTGGTACCAGATTCGTCGTTACAACTTTAATCTTT-CCTGGCATGT
1 CTTCGTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCT-CCATAT
* * * * * * * *
36911606 TTTTGAGCTACAAGGTCCGCCGTTGCAACTTCAACCTTTCCCTCCATAT
1 CTTCGTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCTCCATAT
** * * * ** *
36911655 CTTTAATGGTACCAGATTCGCCGTTGTGGCTTCAATCTTTCCCAGCATGT
1 C-TTCGTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCTCCATAT
* * * *
36911705 -TTCTGAGGTACAAGATTCGTCGTTGCAACTTCAATCGTT-CCTCCATAT
1 CTTC-GTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCTCCATAT
* * * * * * ** *
36911753 CTTCGTTGTACCAGATTCACCATTGCGGCTTCAATCTTT-TCAGCATGT
1 CTTCGTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCTCCATAT
* * * * * * * *
36911801 TTTTGAGGTACAAGGTTCACCATTGCGACTTCAACCTTTCCCTTCATAT
1 CTTCGTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCTCCATAT
* * ** ** * * *
36911850 CTTTGTAGTATTAGATTTACCATTG-TAGCTTCAATCTTTCCCAGCC---T
1 CTTCGTGGTACAAGATTCGCCGTTGCGA-CTTCAATCTTTCCC-TCCATAT
* * * * * *
36911897 GTTCTGAGGTACAAGGTTCGCCATTGCAACTTCAA-CCTTCCCTCCATAT
1 CTTC-GTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCTCCATAT
* * ** * * *
36911946 CTTCATGGTACCAGATTCGCTATTGC-AGGTTCAATC-TT-CCTATCATGT
1 CTTCGTGGTACAAGATTCGCCGTTGCGA-CTTCAATCTTTCCCT-CCATAT
* * * *
36911994 -TTCTGAGGTACAAGGTTCGTCGTTGCGACTTCAACCTTTCCCTCCATAT
1 CTTC-GTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCTCCATAT
* * *
36912043 -TTCGTGGTACCAGATTCGCCGTTGCGGCTTAAATCTTTCCCT
1 CTTCGTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCT
36912085 ATCGAATTTA
Statistics
Matches: 457, Mismatches: 147, Indels: 45
0.70 0.23 0.07
Matches are distributed among these distances:
46 2 0.00
47 16 0.04
48 178 0.39
49 217 0.47
50 44 0.10
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (49 bp):
CTTCGTGGTACAAGATTCGCCGTTGCGACTTCAATCTTTCCCTCCATAT
Found at i:36911557 original size:98 final size:98
Alignment explanation
Indices: 36911414--36912082 Score: 776
Period size: 98 Copynumber: 6.9 Consensus size: 98
36911404 TTGTAACTTC
* * * * * *
36911414 GAGGTAGAAGATTCACCGTTACGACTTCAACCTTTCCCTTCATATCTTCGTGGTACTAGATTCGC
1 GAGGTACAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCATATCTTCGTGGTACCAGATTCGC
*
36911479 CGTTGCGGCTTCAATCTTTCCTAGCATGTTTTT
66 CGTTGCGGCTTCAATCTTTCCTAGCATGTTTCT
* * *
36911512 GAGGTACAAGGTTCACCGTTGCGGCTTCAACCTTTCCCTCCATATCTTCGTGGTACCAGATTCGT
1 GAGGTACAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCATATCTTCGTGGTACCAGATTCGC
* ** * * *
36911577 CGTTACAACTTTAATCTTTCCTGGCATGTTTTT
66 CGTTGCGGCTTCAATCTTTCCTAGCATGTTTCT
* * * **
36911610 GAGCTACAAGGTCCGCCGTTGCAACTTCAACCTTTCCCTCCATATCTTTAATGGTACCAGATTCG
1 GAGGTACAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCATATC-TTCGTGGTACCAGATTCG
* *
36911675 CCGTTGTGGCTTCAATCTTTCCCAGCATGTTTCT
65 CCGTTGCGGCTTCAATCTTTCCTAGCATGTTTCT
* * * * * * *
36911709 GAGGTACAAGATTCGTCGTTGCAACTTCAATCGTT-CCTCCATATCTTCGTTGTACCAGATTCAC
1 GAGGTACAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCATATCTTCGTGGTACCAGATTCGC
* * *
36911773 CATTGCGGCTTCAATCTTTTC-AGCATGTTTTT
66 CGTTGCGGCTTCAATCTTTCCTAGCATGTTTCT
* * * * * ** **
36911805 GAGGTACAAGGTTCACCATTGCGACTTCAACCTTTCCCTTCATATCTTTGTAGTATTAGATTTAC
1 GAGGTACAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCATATCTTCGTGGTACCAGATTCGC
* ** * *
36911870 CATTGTAGCTTCAATCTTTCCCAGCCTG-TTCT
66 CGTTGCGGCTTCAATCTTTCCTAGCATGTTTCT
* * *
36911902 GAGGTACAAGGTTCGCCATTGCAACTTCAACC-TTCCCTCCATATCTTCATGGTACCAGATTCGC
1 GAGGTACAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCATATCTTCGTGGTACCAGATTCGC
** *
36911966 TATTGCAGG-TTCAATC-TTCCTATCATGTTTCT
66 CGTTGC-GGCTTCAATCTTTCCTAGCATGTTTCT
*
36911998 GAGGTACAAGGTTCGTCGTTGCGACTTCAACCTTTCCCTCCATAT-TTCGTGGTACCAGATTCGC
1 GAGGTACAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCATATCTTCGTGGTACCAGATTCGC
*
36912062 CGTTGCGGCTTAAATCTTTCC
66 CGTTGCGGCTTCAATCTTTCC
36912083 CTATCGAATT
Statistics
Matches: 480, Mismatches: 83, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
95 10 0.02
96 134 0.28
97 124 0.26
98 142 0.30
99 70 0.15
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (98 bp):
GAGGTACAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCATATCTTCGTGGTACCAGATTCGC
CGTTGCGGCTTCAATCTTTCCTAGCATGTTTCT
Found at i:36911959 original size:193 final size:195
Alignment explanation
Indices: 36911414--36912083 Score: 812
Period size: 193 Copynumber: 3.4 Consensus size: 195
36911404 TTGTAACTTC
* * * * *
36911414 GAGGTAGAAGATTCACCGTTACGACTTCAACCTTTCCCTTCATATCTTCGTGGTACTAGATTCGC
1 GAGGTACAAGGTTCACCGTTGCGACTTCAACCTTTCCCTCCATATCTTTGTGGTACTAGATTCGC
* * * * **
36911479 CGTTGCGGCTTCAATCTTTCCTAGCATGTTTTTGAGGTACAAGGTTCACCGTTGCGGCTTCAACC
66 CGTTGTGGCTTCAATCTTTCCCAGCATGTTTCTGAGGTACAAGGTTCGCCGTTGCAACTTCAACC
* * * ** * *
36911544 TTTCCCTCCATATCTTCGTGGTACCAGATTCGTCGTTACAACTTTAATCTTTCCTGGCATGTTTT
131 -TTCCCTCCATATCTTCGTGGTACCAGATTCGCCATTGCGGCTTCAATCTTTCCTAGCATGTTTT
36911609 T
195 T
* * * * * *
36911610 GAGCTACAAGGTCCGCCGTTGCAACTTCAACCTTTCCCTCCATATCTTTAATGGTACCAGATTCG
1 GAGGTACAAGGTTCACCGTTGCGACTTCAACCTTTCCCTCCATATCTTT-GTGGTACTAGATTCG
* *
36911675 CCGTTGTGGCTTCAATCTTTCCCAGCATGTTTCTGAGGTACAAGATTCGTCGTTGCAACTTCAAT
65 CCGTTGTGGCTTCAATCTTTCCCAGCATGTTTCTGAGGTACAAGGTTCGCCGTTGCAACTTCAA-
* * * *
36911740 CGTT-CCTCCATATCTTCGTTGTACCAGATTCACCATTGCGGCTTCAATCTTTTC-AGCATGTTT
129 CCTTCCCTCCATATCTTCGTGGTACCAGATTCGCCATTGCGGCTTCAATCTTTCCTAGCATGTTT
36911803 TT
194 TT
* * * * **
36911805 GAGGTACAAGGTTCACCATTGCGACTTCAACCTTTCCCTTCATATCTTTGTAGTATTAGATTTAC
1 GAGGTACAAGGTTCACCGTTGCGACTTCAACCTTTCCCTCCATATCTTTGTGGTACTAGATTCGC
* * * *
36911870 CATTGTAGCTTCAATCTTTCCCAGCCTG-TTCTGAGGTACAAGGTTCGCCATTGCAACTTCAACC
66 CGTTGTGGCTTCAATCTTTCCCAGCATGTTTCTGAGGTACAAGGTTCGCCGTTGCAACTTCAACC
* * * *
36911934 TTCCCTCCATATCTTCATGGTACCAGATTCGCTATTGCAGG-TTCAATC-TTCCTATCATGTTTC
131 TTCCCTCCATATCTTCGTGGTACCAGATTCGCCATTGC-GGCTTCAATCTTTCCTAGCATGTTTT
36911997 T
195 T
** * *
36911998 GAGGTACAAGGTTCGTCGTTGCGACTTCAACCTTTCCCTCCATAT-TTCGTGGTACCAGATTCGC
1 GAGGTACAAGGTTCACCGTTGCGACTTCAACCTTTCCCTCCATATCTTTGTGGTACTAGATTCGC
* *
36912062 CGTTGCGGCTTAAATCTTTCCC
66 CGTTGTGGCTTCAATCTTTCCC
36912084 TATCGAATTT
Statistics
Matches: 399, Mismatches: 70, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
192 37 0.09
193 119 0.30
194 37 0.09
195 53 0.13
196 81 0.20
197 71 0.18
198 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (195 bp):
GAGGTACAAGGTTCACCGTTGCGACTTCAACCTTTCCCTCCATATCTTTGTGGTACTAGATTCGC
CGTTGTGGCTTCAATCTTTCCCAGCATGTTTCTGAGGTACAAGGTTCGCCGTTGCAACTTCAACC
TTCCCTCCATATCTTCGTGGTACCAGATTCGCCATTGCGGCTTCAATCTTTCCTAGCATGTTTTT
Found at i:36913125 original size:17 final size:17
Alignment explanation
Indices: 36913103--36913207 Score: 57
Period size: 18 Copynumber: 5.4 Consensus size: 17
36913093 TCGACCTCTC
36913103 CTTTTTGTTTCTTTTCT
1 CTTTTTGTTTCTTTTCT
*
36913120 CTTTTTCTTTTCATTTTTTTCTT
1 CTTTTT-GTTTC----TTTTC-T
*
36913143 CTTTTTGTTTCTTTTTT
1 CTTTTTGTTTCTTTTCT
*
36913160 CTTTTTCTTTTCATTTTTTTCTT
1 CTTTTT-GTTTC----TTTTC-T
*
36913183 CTTTTTGTTTCCTTTTTT
1 CTTTTTGTTT-CTTTTCT
36913201 CTTTTTG
1 CTTTTTG
36913208 GGTGAAATAT
Statistics
Matches: 68, Mismatches: 7, Indels: 25
0.68 0.07 0.25
Matches are distributed among these distances:
17 13 0.19
18 20 0.29
19 4 0.06
22 16 0.24
23 15 0.22
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.78
Consensus pattern (17 bp):
CTTTTTGTTTCTTTTCT
Found at i:36913128 original size:13 final size:13
Alignment explanation
Indices: 36913110--36913182 Score: 69
Period size: 13 Copynumber: 5.5 Consensus size: 13
36913100 CTCCTTTTTG
36913110 TTTCTTTTCTCTT
1 TTTCTTTTCTCTT
*
36913123 TTTCTTTTCATTTT
1 TTTCTTTTC-TCTT
36913137 TTTCTTCTT-T-TT
1 TTTCTT-TTCTCTT
*
36913149 GTTTCTTTTTTCTT
1 -TTTCTTTTCTCTT
*
36913163 TTTCTTTTCATTTT
1 TTTCTTTTC-TCTT
36913177 TTTCTT
1 TTTCTT
36913183 CTTTTTGTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
12 4 0.08
13 25 0.49
14 20 0.39
15 2 0.04
ACGTcount: A:0.03, C:0.16, G:0.01, T:0.79
Consensus pattern (13 bp):
TTTCTTTTCTCTT
Found at i:36913129 original size:23 final size:22
Alignment explanation
Indices: 36913103--36913188 Score: 65
Period size: 23 Copynumber: 4.0 Consensus size: 22
36913093 TCGACCTCTC
36913103 CTTTTTGTTTCTTTTCTCTTTTT
1 CTTTTTGTTT-TTTTCTCTTTTT
**
36913126 C-TTTTCATTTTTT-TC---TT
1 CTTTTTGTTTTTTTCTCTTTTT
*
36913143 CTTTTTGTTTCTTTTTTCTTTTT
1 CTTTTTGTTT-TTTTCTCTTTTT
**
36913166 CTTTTCATTTTTTTCTTCTTTTT
1 CTTTTTGTTTTTTTC-TCTTTTT
36913189 GTTTCCTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
17 3 0.06
18 6 0.12
19 4 0.08
20 4 0.08
21 4 0.08
22 10 0.20
23 18 0.37
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.79
Consensus pattern (22 bp):
CTTTTTGTTTTTTTCTCTTTTT
Found at i:36913147 original size:40 final size:40
Alignment explanation
Indices: 36913103--36913206 Score: 190
Period size: 40 Copynumber: 2.6 Consensus size: 40
36913093 TCGACCTCTC
*
36913103 CTTTTTGTTTCTTTTCTCTTTTTCTTTTCATTTTTTTCTT
1 CTTTTTGTTTCTTTTTTCTTTTTCTTTTCATTTTTTTCTT
36913143 CTTTTTGTTTCTTTTTTCTTTTTCTTTTCATTTTTTTCTT
1 CTTTTTGTTTCTTTTTTCTTTTTCTTTTCATTTTTTTCTT
36913183 CTTTTTGTTTCCTTTTTTCTTTTT
1 CTTTTTGTTT-CTTTTTTCTTTTT
36913207 GGGTGAAATA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
40 49 0.79
41 13 0.21
ACGTcount: A:0.02, C:0.16, G:0.03, T:0.79
Consensus pattern (40 bp):
CTTTTTGTTTCTTTTTTCTTTTTCTTTTCATTTTTTTCTT
Found at i:36913199 original size:23 final size:22
Alignment explanation
Indices: 36913103--36913200 Score: 104
Period size: 20 Copynumber: 4.8 Consensus size: 22
36913093 TCGACCTCTC
*
36913103 CTTTTTGTTTC--TTTTCTCTT
1 CTTTTTGTTTCATTTTTTTCTT
*
36913123 -TTTCT-TTTCATTTTTTTCTT
1 CTTTTTGTTTCATTTTTTTCTT
36913143 CTTTTTGTTTC--TTTTTTCTT
1 CTTTTTGTTTCATTTTTTTCTT
*
36913163 -TTTCT-TTTCATTTTTTTCTT
1 CTTTTTGTTTCATTTTTTTCTT
*
36913183 CTTTTTGTTTCCTTTTTT
1 CTTTTTGTTTCATTTTTT
36913201 CTTTTTGGGT
Statistics
Matches: 64, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
18 8 0.12
19 8 0.12
20 26 0.41
21 8 0.12
22 14 0.22
ACGTcount: A:0.02, C:0.16, G:0.03, T:0.79
Consensus pattern (22 bp):
CTTTTTGTTTCATTTTTTTCTT
Found at i:36913201 original size:8 final size:7
Alignment explanation
Indices: 36913110--36913206 Score: 62
Period size: 7 Copynumber: 14.3 Consensus size: 7
36913100 CTCCTTTTTG
36913110 TTTCTTT
1 TTTCTTT
*
36913117 TCTC-TT
1 TTTCTTT
36913123 TTTCTTT
1 TTTCTTT
*
36913130 TCAT-TTT
1 T-TTCTTT
*
36913137 TTTCTTC
1 TTTCTTT
*
36913144 TTT-TTG
1 TTTCTTT
36913150 TTTCTTT
1 TTTCTTT
36913157 TTTC-TT
1 TTTCTTT
36913163 TTTCTTT
1 TTTCTTT
*
36913170 TCAT-TTT
1 T-TTCTTT
36913177 TTTCTTCT
1 TTTCTT-T
*
36913185 TTT-TGT
1 TTTCTTT
*
36913191 TTCCTTT
1 TTTCTTT
36913198 TTTCTTT
1 TTTCTTT
36913205 TT
1 TT
36913207 GGGTGAAATA
Statistics
Matches: 68, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
6 21 0.31
7 41 0.60
8 6 0.09
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.79
Consensus pattern (7 bp):
TTTCTTT
Found at i:36913207 original size:18 final size:19
Alignment explanation
Indices: 36913136--36913207 Score: 69
Period size: 18 Copynumber: 3.7 Consensus size: 19
36913126 CTTTTCATTT
36913136 TTTTCTTCTTTTTGTTT-C
1 TTTTCTTCTTTTTGTTTCC
* *
36913154 TTTT-TTCTTTTTCTTTTCATTT
1 TTTTCTTCTTTTT-GTTTC---C
36913176 TTTTCTTCTTTTTGTTTCC
1 TTTTCTTCTTTTTGTTTCC
36913195 TTTT-TTCTTTTTG
1 TTTTCTTCTTTTTG
36913208 GGTGAAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
17 8 0.18
18 16 0.36
19 4 0.09
22 8 0.18
23 8 0.18
ACGTcount: A:0.01, C:0.15, G:0.04, T:0.79
Consensus pattern (19 bp):
TTTTCTTCTTTTTGTTTCC
Found at i:36914165 original size:9 final size:8
Alignment explanation
Indices: 36914130--36914175 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
36914120 TTTTGACCCC
36914130 TTTTTCTT
1 TTTTTCTT
*
36914138 TTTTCCTT
1 TTTTTCTT
*
36914146 TTTTGTTTT
1 TTTT-TCTT
36914155 TTTTTCATT
1 TTTTTC-TT
36914164 TTTTTCTT
1 TTTTTCTT
36914172 TTTT
1 TTTT
36914176 GATAACACGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 18 0.56
9 14 0.44
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:36918526 original size:152 final size:152
Alignment explanation
Indices: 36918250--36918562 Score: 572
Period size: 152 Copynumber: 2.1 Consensus size: 152
36918240 AACAAAACAA
*
36918250 AGGGGGACTTAAAGCGTAATTTTCCTTTTTTATTTTTCAGAGATTTGCCACGTAAACGATAGCGT
1 AGGGGGACTTAAAGCGTAATTTTCCTTTTTTATTTTTCAGAGATTTGCCACGTAAACGACAGCGT
36918315 TTCAAAGCTACATGTCTAAGCTTGAAAACGCCATCGTATTAGTCTAAACTATGTTCAAAAGGACC
66 TTCAAAGCTACATGTCTAAGCTTGAAAACGCCATCGTATTAGTCTAAACTATGTTCAAAAGGACC
*
36918380 AAAACTAAAATACTGGAGAAAC
131 AAAACCAAAATACTGGAGAAAC
*
36918402 AGGGGGACTTAAAGCGTAATTTTCCTTTTTTATTTTTCAGAGATTTGCCACGTAAACGACAGTGT
1 AGGGGGACTTAAAGCGTAATTTTCCTTTTTTATTTTTCAGAGATTTGCCACGTAAACGACAGCGT
*
36918467 TTCAAAGCTACATGTCTAAGCTTGAAAACGCCATCGTATTAGTCTAAACTATGTTCAAAAGGCCC
66 TTCAAAGCTACATGTCTAAGCTTGAAAACGCCATCGTATTAGTCTAAACTATGTTCAAAAGGACC
*
36918532 AAAACCGAAATACTGGAGAAAC
131 AAAACCAAAATACTGGAGAAAC
*
36918554 AGGAGGACT
1 AGGGGGACT
36918563 GCAGAGCGCA
Statistics
Matches: 155, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
152 155 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (152 bp):
AGGGGGACTTAAAGCGTAATTTTCCTTTTTTATTTTTCAGAGATTTGCCACGTAAACGACAGCGT
TTCAAAGCTACATGTCTAAGCTTGAAAACGCCATCGTATTAGTCTAAACTATGTTCAAAAGGACC
AAAACCAAAATACTGGAGAAAC
Found at i:36921243 original size:17 final size:17
Alignment explanation
Indices: 36921218--36921269 Score: 68
Period size: 17 Copynumber: 3.1 Consensus size: 17
36921208 AAGTTAGACT
36921218 GACCCGACCCATTGACC
1 GACCCGACCCATTGACC
* *
36921235 GACCTGACCTATTGACC
1 GACCCGACCCATTGACC
* *
36921252 GACCCGAACCGTTGACC
1 GACCCGACCCATTGACC
36921269 G
1 G
36921270 TTGACTTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.23, C:0.40, G:0.21, T:0.15
Consensus pattern (17 bp):
GACCCGACCCATTGACC
Found at i:36921749 original size:18 final size:17
Alignment explanation
Indices: 36921711--36921763 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
36921701 TGAGATGTTG
*
36921711 TGTTATATGTGAT-TGTA
1 TGTTATATGTGATAT-TT
36921728 TGTTATATTGTGATATTT
1 TGTTATA-TGTGATATTT
*
36921746 TGTTA-ATATGATATTT
1 TGTTATATGTGATATTT
36921762 TG
1 TG
36921764 CTGAGATGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 11 0.34
17 8 0.25
18 12 0.38
19 1 0.03
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.57
Consensus pattern (17 bp):
TGTTATATGTGATATTT
Found at i:36923196 original size:22 final size:22
Alignment explanation
Indices: 36923169--36923213 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
36923159 AACATAATGA
*
36923169 TATATATATAATAT-ATTTTTAT
1 TATATA-ATAATATAATTATTAT
*
36923191 TATATAATTATATAATTATTAT
1 TATATAATAATATAATTATTAT
36923213 T
1 T
36923214 TGATTTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TATATAATAATATAATTATTAT
Found at i:36923224 original size:19 final size:19
Alignment explanation
Indices: 36923173--36923212 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
36923163 TAATGATATA
**
36923173 TATATAA-TATATTTTTAT
1 TATATAATTATATAATTAT
36923191 TATATAATTATATAATTAT
1 TATATAATTATATAATTAT
36923210 TAT
1 TAT
36923213 TTGATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATATAATTATATAATTAT
Found at i:36923580 original size:15 final size:15
Alignment explanation
Indices: 36923560--36923617 Score: 62
Period size: 16 Copynumber: 3.7 Consensus size: 15
36923550 TTTGGTTCAC
36923560 TGTAATGGAATAGAA
1 TGTAATGGAATAGAA
*
36923575 TGTAATGGAATAGAGT
1 TGTAATGGAATAGA-A
* *
36923591 TCTAATGGAATAAAA
1 TGTAATGGAATAGAA
*
36923606 CTATAATGGAAT
1 -TGTAATGGAAT
36923618 GAAATAAAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
15 14 0.39
16 22 0.61
ACGTcount: A:0.45, C:0.03, G:0.22, T:0.29
Consensus pattern (15 bp):
TGTAATGGAATAGAA
Found at i:36923935 original size:21 final size:21
Alignment explanation
Indices: 36923892--36923940 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
36923882 TATTATTAAA
36923892 ATATAAATTAAAAAATTATAAT
1 ATATAAATTAAAAAA-TATAAT
*
36923914 ATATAATATTATAAAA-ATAAT
1 ATATAA-ATTAAAAAATATAAT
36923935 ATATAA
1 ATATAA
36923941 CCTACGTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 11 0.44
22 6 0.24
23 8 0.32
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
ATATAAATTAAAAAATATAAT
Found at i:36923935 original size:58 final size:57
Alignment explanation
Indices: 36923766--36923937 Score: 147
Period size: 56 Copynumber: 3.0 Consensus size: 57
36923756 TTTTAATAAT
* * * * * ** * *
36923766 ATTATTATTAAATATATTTTAATAAAA-AATAAATAATTTAATCATATTTTGACATA
1 ATTATTATTAAATAAAATTTAAAAAAATAATATATAATTTAATAATATAATAATATA
* **
36923822 ATTATTATTAAATAAAATTTAATAAAATAATATATAATTTAATAATATTTTTAATATA
1 ATTATTATTAAATAAAATTTAAAAAAATAATATATAATTTAATAATA-TAATAATATA
36923880 ATTATTATTAAAATATAAA-TTAAAAAATTATAATATATAATATT-ATAA-A-AATAATATA
1 ATTATTATT-AAATA-AAATTTAAAAAA--ATAATATATAAT-TTAATAATATAATAATATA
36923938 TAACCTACGT
Statistics
Matches: 100, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
56 25 0.25
57 17 0.17
58 24 0.24
59 12 0.12
60 4 0.04
61 16 0.16
62 2 0.02
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.44
Consensus pattern (57 bp):
ATTATTATTAAATAAAATTTAAAAAAATAATATATAATTTAATAATATAATAATATA
Found at i:36923938 original size:23 final size:22
Alignment explanation
Indices: 36923892--36923939 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
36923882 TATTATTAAA
*
36923892 ATATAAATTAAAAAATTATAAT
1 ATATAAATTAAAAAATAATAAT
36923914 ATATAATATTATAAAAATAAT-AT
1 ATATAA-ATTA-AAAAATAATAAT
36923937 ATA
1 ATA
36923940 ACCTACGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 6 0.26
23 9 0.39
24 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
ATATAAATTAAAAAATAATAAT
Found at i:36929121 original size:18 final size:18
Alignment explanation
Indices: 36929100--36929183 Score: 78
Period size: 18 Copynumber: 4.4 Consensus size: 18
36929090 TTGCACTTTG
*
36929100 GTGCCCGTATTTACACTT
1 GTGCCCCTATTTACACTT
36929118 GTGCCCCTATTTACACTT
1 GTGCCCCTATTTACACTT
* * *
36929136 GTACCCCTGTTTGCACTTT
1 GTGCCCCTATTTACAC-TT
* *
36929155 GGTGCCCCTACTTGCACATCT
1 -GTGCCCCTATTTACAC-T-T
36929176 GTGCCCCT
1 GTGCCCCT
36929184 TTTTGCACTC
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
18 30 0.55
19 2 0.04
20 22 0.40
21 1 0.02
ACGTcount: A:0.13, C:0.35, G:0.17, T:0.36
Consensus pattern (18 bp):
GTGCCCCTATTTACACTT
Found at i:36929189 original size:20 final size:18
Alignment explanation
Indices: 36929089--36929192 Score: 91
Period size: 20 Copynumber: 5.4 Consensus size: 18
36929079 TCTGTGCATG
*
36929089 TTTGCACTTTGGTGCCCGTA
1 TTTGCAC-TT-GTGCCCCTA
*
36929109 TTTACACTTGTGCCCCTA
1 TTTGCACTTGTGCCCCTA
* * *
36929127 TTTACACTTGTACCCCTG
1 TTTGCACTTGTGCCCCTA
36929145 TTTGCACTTTGGTGCCCCTA
1 TTTGCAC-TT-GTGCCCCTA
* *
36929165 CTTGCACATCTGTGCCCCTT
1 TTTGCAC-T-TGTGCCCCTA
36929185 TTTGCACT
1 TTTGCACT
36929193 CCGGTATGGC
Statistics
Matches: 70, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
18 30 0.43
19 5 0.07
20 34 0.49
21 1 0.01
ACGTcount: A:0.12, C:0.32, G:0.16, T:0.39
Consensus pattern (18 bp):
TTTGCACTTGTGCCCCTA
Found at i:36935688 original size:21 final size:19
Alignment explanation
Indices: 36935664--36935713 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 19
36935654 AATCACATGT
*
36935664 TTAACAATTTCATGTCCAAAA
1 TTAACAATTTCAAG--CAAAA
36935685 TTAAC-ATTT-AAGCAAAA
1 TTAACAATTTCAAGCAAAA
36935702 TTAATCAATTTC
1 TTAA-CAATTTC
36935714 TTAAACAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 9 0.36
18 1 0.04
19 6 0.24
20 4 0.16
21 5 0.20
ACGTcount: A:0.44, C:0.16, G:0.04, T:0.36
Consensus pattern (19 bp):
TTAACAATTTCAAGCAAAA
Found at i:36935845 original size:21 final size:20
Alignment explanation
Indices: 36935821--36935877 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
36935811 GAAGTTTGAA
*
36935821 TTGTATCGATAGAATCTAAAG
1 TTGTATCGGTAGAATCT-AAG
*
36935842 TTGTATCGGTAGAACTCTCAG
1 TTGTATCGGTAGAA-TCTAAG
*
36935863 TTCTATCGGTAGAAT
1 TTGTATCGGTAGAAT
36935878 TCTATAGCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.03
21 28 0.88
22 3 0.09
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (20 bp):
TTGTATCGGTAGAATCTAAG
Found at i:36941003 original size:2 final size:2
Alignment explanation
Indices: 36940991--36941027 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
36940981 AAGTTCATGG
*
36940991 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36941028 GATTTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:36941597 original size:20 final size:20
Alignment explanation
Indices: 36941572--36941731 Score: 98
Period size: 20 Copynumber: 8.0 Consensus size: 20
36941562 GGTGTTCCTA
36941572 TTTGCACATTTGTGCCCCTG
1 TTTGCACATTTGTGCCCCTG
*
36941592 TTTGCAC-TTTGGTGCCCCTA
1 TTTGCACATTT-GTGCCCCTG
* *
36941612 TTTGCACATCTATGCCCCTG
1 TTTGCACATTTGTGCCCCTG
* *
36941632 TTT--TCATTTCAGTGCCCCTA
1 TTTGCACATTT--GTGCCCCTG
* * *
36941652 TTT-CAACATCTATGCCCCTA
1 TTTGC-ACATTTGTGCCCCTG
*
36941672 TTTGCAC-TTCAGTGCCCCTG
1 TTTGCACATT-TGTGCCCCTG
** *
36941692 AATGCAC-TCTGGTGCCCCTG
1 TTTGCACAT-TTGTGCCCCTG
* *
36941712 ATCGCACATTTGTGCCCCTG
1 TTTGCACATTTGTGCCCCTG
36941732 CTATGCATCA
Statistics
Matches: 109, Mismatches: 21, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
18 4 0.04
19 4 0.04
20 92 0.84
21 5 0.05
22 4 0.04
ACGTcount: A:0.14, C:0.33, G:0.17, T:0.36
Consensus pattern (20 bp):
TTTGCACATTTGTGCCCCTG
Found at i:36941603 original size:40 final size:40
Alignment explanation
Indices: 36941559--36941690 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 40
36941549 TTGAATACAA
** * *
36941559 TTTGGTGTTCCTATTTGCACATTTGTGCCCCTGTTTGCAC
1 TTTGGTGCCCCTATTTGCACATCTATGCCCCTGTTTGCAC
*
36941599 TTTGGTGCCCCTATTTGCACATCTATGCCCCTGTTTTCA-
1 TTTGGTGCCCCTATTTGCACATCTATGCCCCTGTTTGCAC
* *
36941638 TTTCAGTGCCCCTATTT-CAACATCTATGCCCCTATTTGCAC
1 TTT-GGTGCCCCTATTTGC-ACATCTATGCCCCTGTTTGCAC
**
36941679 TTCAGTGCCCCT
1 TTTGGTGCCCCT
36941691 GAATGCACTC
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
39 4 0.05
40 74 0.93
41 2 0.03
ACGTcount: A:0.14, C:0.31, G:0.15, T:0.40
Consensus pattern (40 bp):
TTTGGTGCCCCTATTTGCACATCTATGCCCCTGTTTGCAC
Found at i:36943356 original size:48 final size:48
Alignment explanation
Indices: 36943285--36943381 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
36943275 GCTTGCCATT
*
36943285 CATAGAAAATTTCATTGGCTAGTTTCATCCTCCAAGTAGCCCATGATC
1 CATAGAAAATTTCATTGGCTAGTTCCATCCTCCAAGTAGCCCATGATC
36943333 CATAGAAAATTTCATTGGCTAGTTCCATCCTCCAAGTAGCCCATGATC
1 CATAGAAAATTTCATTGGCTAGTTCCATCCTCCAAGTAGCCCATGATC
36943381 C
1 C
36943382 GATGGATGAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (48 bp):
CATAGAAAATTTCATTGGCTAGTTCCATCCTCCAAGTAGCCCATGATC
Found at i:36944066 original size:19 final size:19
Alignment explanation
Indices: 36944044--36944084 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
36944034 CCATCTAAAG
*
36944044 CACCTAAATAATTCTACAT
1 CACCTAAACAATTCTACAT
36944063 CACCTAAACAATTCTACAT
1 CACCTAAACAATTCTACAT
36944082 CAC
1 CAC
36944085 ATGAATAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.27
Consensus pattern (19 bp):
CACCTAAACAATTCTACAT
Found at i:36945347 original size:26 final size:26
Alignment explanation
Indices: 36945277--36945340 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 26
36945267 ATCTTCTAGA
** *
36945277 AATTTAGCTCAAATGAGCCAAGATAG
1 AATTTAGCTCTCACGAGCCAAGATAG
* *
36945303 AGTTTAGCTCTCACGAGCCCAGATAG
1 AATTTAGCTCTCACGAGCCAAGATAG
*
36945329 AATTTTGCTCTC
1 AATTTAGCTCTC
36945341 TCTAGCCATA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (26 bp):
AATTTAGCTCTCACGAGCCAAGATAG
Found at i:36945389 original size:25 final size:25
Alignment explanation
Indices: 36945355--36945424 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
36945345 GCCATACAAA
* ** *
36945355 AATTATGCTCTTTTGAGCCAAATAG
1 AATTACGCTCTTACGAGCCAAACAG
* *
36945380 AATTACGCTCTAACGAGCCAGACAG
1 AATTACGCTCTTACGAGCCAAACAG
*
36945405 AATTACGCTCTTACAAGCCA
1 AATTACGCTCTTACGAGCCA
36945425 GAATCCAAAG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (25 bp):
AATTACGCTCTTACGAGCCAAACAG
Done.