Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 113 of 135
Found at i:38369103 original size:98 final size:96
Alignment explanation
Indices: 38368809--38369103 Score: 332
Period size: 98 Copynumber: 3.1 Consensus size: 96
38368799 AGAAAACGTT
* * *
38368809 GAATCTCATACCTTAGAGATGTGAAGGGAAAGGTTAAAGCCACAAAGACAAACCTTGTACCCTAA
1 GAATCTCATACC-TAGAGATGTGAAGGGAAAGGTTGAAGCCAAAAAGGCAAACCTTGTACCCTAA
** *
38368874 AAATATGAAGGGAGAGATTGAAGTCGTAACGGT
65 AAATATGAAGGGAGAGATTGAAG-CACAACGGC
*
38368907 GAATCTCATACCCTAGAGATGTGAA--G---GGTTGAAGCCACAATA-GCAAACCTTGTACCCTA
1 GAATCTCATA-CCTAGAGATGTGAAGGGAAAGGTTGAAGCCA-AAAAGGCAAACCTTGTACCCTA
* * * *
38368966 GATATATGGAGGGAGAGTTTGAAGCAGCAACGGC
64 AAAATATGAAGGGAGAGATTGAAGCA-CAACGGC
* * * *
38369000 AAATCTCATACACTAGAGTTGTGAAGGGAAAGGTTGAAGCCAAAAAGGCGAACCTTGTACCTTAA
1 GAATCTCATAC-CTAGAGATGTGAAGGGAAAGGTTGAAGCCAAAAAGGCAAACCTTGTACCCTAA
* *
38369065 AGATATGAAGGGAGAGATTGAAGCCACAACGAC
65 AAATATGAAGGGAGAGATTGAAG-CACAACGGC
38369098 GAATCT
1 GAATCT
38369104 TTCATGTTAG
Statistics
Matches: 164, Mismatches: 22, Indels: 22
0.79 0.11 0.11
Matches are distributed among these distances:
92 2 0.01
93 72 0.44
94 2 0.01
95 1 0.01
96 1 0.01
97 3 0.02
98 79 0.48
99 4 0.02
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (96 bp):
GAATCTCATACCTAGAGATGTGAAGGGAAAGGTTGAAGCCAAAAAGGCAAACCTTGTACCCTAAA
AATATGAAGGGAGAGATTGAAGCACAACGGC
Found at i:38369233 original size:41 final size:40
Alignment explanation
Indices: 38369173--38369364 Score: 114
Period size: 41 Copynumber: 4.5 Consensus size: 40
38369163 AAGATGTGAT
* * *
38369173 GGGAAAGATTAAAGTCGCAATAGCGAATCTTGTACCCTAGA
1 GGGAAA-ATTGAAGCCGCAATGGCGAATCTTGTACCCTAGA
* * * * **
38369214 GGGAAAATTTGAAGCCGCAACGGTGAACCTTATACTTTAGAGA
1 GGGAAAA-TTGAAGCCGCAATGGCGAATCTTGTACCCT--AGA
**
38369257 TGTGATGCAAAAGATTGAAGCCATAATGGCGAATCTTGTACCCTAGA
1 -G-G--G--AAA-ATTGAAGCCGCAATGGCGAATCTTGTACCCTAGA
* * ** *
38369304 GGGAAAGGTTGAAGCCGTAATGATGAATCTTGTACCTTAGA
1 GGGAAA-ATTGAAGCCGCAATGGCGAATCTTGTACCCTAGA
*
38369345 GGGAAAGATTGAAGTCGCAA
1 GGGAAA-ATTGAAGCCGCAA
38369365 CGATGAACCT
Statistics
Matches: 116, Mismatches: 25, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
40 1 0.01
41 77 0.66
43 4 0.03
44 1 0.01
45 2 0.02
46 1 0.01
47 4 0.03
49 25 0.22
50 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (40 bp):
GGGAAAATTGAAGCCGCAATGGCGAATCTTGTACCCTAGA
Found at i:38369289 original size:90 final size:90
Alignment explanation
Indices: 38369127--38369320 Score: 235
Period size: 90 Copynumber: 2.1 Consensus size: 90
38369117 ATATGAAGCG
* * * ** * *
38369127 AAATGTTGAAGTCGCAATGGCGAACCTCATGCCTTAAAGATGTGATGGGAAAGATTAAAGTCGCA
1 AAAT-TTGAAGCCGCAACGGCGAACCTCATACCTTAAAGATGTGATGCAAAAGATTAAAGCCACA
38369192 ATAGCGAATCTTGTACCCTAGAGGGA
65 ATAGCGAATCTTGTACCCTAGAGGGA
* * * * * *
38369218 AAATTTGAAGCCGCAACGGTGAACCTTATACTTTAGAGATGTGATGCAAAAGATTGAAGCCATAA
1 AAATTTGAAGCCGCAACGGCGAACCTCATACCTTAAAGATGTGATGCAAAAGATTAAAGCCACAA
*
38369283 TGGCGAATCTTGTACCCTAGAGGGA
66 TAGCGAATCTTGTACCCTAGAGGGA
**
38369308 AAGGTTGAAGCCG
1 AAATTTGAAGCCG
38369321 TAATGATGAA
Statistics
Matches: 87, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
90 83 0.95
91 4 0.05
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.23
Consensus pattern (90 bp):
AAATTTGAAGCCGCAACGGCGAACCTCATACCTTAAAGATGTGATGCAAAAGATTAAAGCCACAA
TAGCGAATCTTGTACCCTAGAGGGA
Found at i:38369344 original size:90 final size:90
Alignment explanation
Indices: 38369148--38369345 Score: 234
Period size: 90 Copynumber: 2.2 Consensus size: 90
38369138 TCGCAATGGC
* * * ** * *
38369148 GAACCTCATGCCTTAAAGATGTGATGGGAAAGATTAAAGTCGCAATAGCGAATCTTGTACCCTAG
1 GAACCTTATACCTTAGAGATGTGATGCAAAAGATTAAAGCCACAATAGCGAATCTTGTACCCTAG
* *
38369213 AGGGAAAATTTGAAGCCGCAACGGT
66 AGGGAAAAGTTGAAGCCGCAACGAT
* * * *
38369238 GAACCTTATACTTTAGAGATGTGATGCAAAAGATTGAAGCCATAATGGCGAATCTTGTACCCTAG
1 GAACCTTATACCTTAGAGATGTGATGCAAAAGATTAAAGCCACAATAGCGAATCTTGTACCCTAG
* * *
38369303 AGGGAAAGGTTGAAGCCGTAATGAT
66 AGGGAAAAGTTGAAGCCGCAACGAT
* *
38369328 GAATCTTGTACCTTAGAG
1 GAACCTTATACCTTAGAG
38369346 GGAAAGATTG
Statistics
Matches: 89, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (90 bp):
GAACCTTATACCTTAGAGATGTGATGCAAAAGATTAAAGCCACAATAGCGAATCTTGTACCCTAG
AGGGAAAAGTTGAAGCCGCAACGAT
Found at i:38369370 original size:41 final size:41
Alignment explanation
Indices: 38369287--38369566 Score: 139
Period size: 41 Copynumber: 6.4 Consensus size: 41
38369277 CCATAATGGC
* * * *
38369287 GAATCTTGTACCCTAGAGGGAAAGGTTGAAGCCGTAATGAT
1 GAATCTTGTACCTTAGAGGGAAAGATTGAAGCCGCAACGAT
*
38369328 GAATCTTGTACCTTAGAGGGAAAGATTGAAGTCGCAACGAT
1 GAATCTTGTACCTTAGAGGGAAAGATTGAAGCCGCAACGAT
* * * * * * *
38369369 GAACCTTATACCTTAGAGATGTGATGGAAAATATTGAAGACGTAATGGT
1 GAATCTTGTACCTT--AGA---G--GG-AAAGATTGAAGCCGCAACGAT
* * * * * * * *
38369418 GAATATTGTACCCTAAAGGCAAGGGTTGAAGCCGTAACCG-C
1 GAATCTTGTACCTTAGAGGGAAAGATTGAAGCCGCAA-CGAT
* * * *
38369459 GAACCTTATACCTTAAAGATGTGATGGGAAAGATTGAAGCCGCGACGGT
1 GAATCTTGTACCTT----A---GA-GGGAAAGATTGAAGCCGCAACGAT
* * *
38369508 GAATCTTGTACCCTAGAGGGAAAGATTGAAGCCGTAACGAC
1 GAATCTTGTACCTTAGAGGGAAAGATTGAAGCCGCAACGAT
* *
38369549 GAACCTTATACCTTAGAG
1 GAATCTTGTACCTTAGAG
38369567 ATGTGATGGG
Statistics
Matches: 176, Mismatches: 45, Indels: 36
0.68 0.18 0.14
Matches are distributed among these distances:
41 106 0.60
42 4 0.02
43 3 0.02
44 1 0.01
45 2 0.01
46 1 0.01
47 2 0.01
48 5 0.03
49 52 0.30
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (41 bp):
GAATCTTGTACCTTAGAGGGAAAGATTGAAGCCGCAACGAT
Found at i:38369407 original size:131 final size:131
Alignment explanation
Indices: 38369197--38369454 Score: 383
Period size: 131 Copynumber: 2.0 Consensus size: 131
38369187 TCGCAATAGC
* *
38369197 GAATCTTGTACCCTAGAGGGAAAATTTGAAGCCGCAACGGTGAACCTTATACTTTAGAGATGTGA
1 GAATCTTGTACCCTAGAGGGAAAATTTGAAGCCGCAACGATGAACCTTATACCTTAGAGATGTGA
* * * *
38369262 TGCAAAAGATTGAAGCCATAATGGCGAATCTTGTACCCTAGAGGGAAAGGTTGAAGCCGTAATGA
66 TGCAAAAGATTGAAGACATAATGGCGAATATTGTACCCTAAAGGCAAAGGTTGAAGCCGTAATGA
38369327 T
131 T
* *
38369328 GAATCTTGTACCTTAGAGGGAAAGA-TTGAAGTCGCAACGATGAACCTTATACCTTAGAGATGTG
1 GAATCTTGTACCCTAGAGGGAAA-ATTTGAAGCCGCAACGATGAACCTTATACCTTAGAGATGTG
* * * * *
38369392 ATGGAAAATATTGAAGACGTAATGGTGAATATTGTACCCTAAAGGCAAGGGTTGAAGCCGTAA
65 ATGCAAAAGATTGAAGACATAATGGCGAATATTGTACCCTAAAGGCAAAGGTTGAAGCCGTAA
38369455 CCGCGAACCT
Statistics
Matches: 113, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
131 112 0.99
132 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (131 bp):
GAATCTTGTACCCTAGAGGGAAAATTTGAAGCCGCAACGATGAACCTTATACCTTAGAGATGTGA
TGCAAAAGATTGAAGACATAATGGCGAATATTGTACCCTAAAGGCAAAGGTTGAAGCCGTAATGA
T
Found at i:38369427 original size:90 final size:90
Alignment explanation
Indices: 38369304--38369995 Score: 508
Period size: 90 Copynumber: 7.4 Consensus size: 90
38369294 GTACCCTAGA
* * * * * * * *
38369304 GGGAAAGGTTGAAGCCGTAATGATGAATCTTGTACCTTAGAGGGAAAGATTGAAGTCGCAACGAT
1 GGGAAAGATTGAAGACGCAACGGTGAATCTTGTACCCTAGAGGGAAAGATTGAAGCCGCAACGAC
38369369 GAACCTTATACCTTAGAGATGTGAT
66 GAACCTTATACCTTAGAGATGTGAT
* * * * * * * * * *
38369394 GGAAAATATTGAAGACGTAATGGTGAATATTGTACCCTAAAGGCAAGGGTTGAAGCCGTAACCG-
1 GGGAAAGATTGAAGACGCAACGGTGAATCTTGTACCCTAGAGGGAAAGATTGAAGCCGCAA-CGA
*
38369458 CGAACCTTATACCTTAAAGATGTGAT
65 CGAACCTTATACCTTAGAGATGTGAT
* * *
38369484 GGGAAAGATTGAAGCCGCGACGGTGAATCTTGTACCCTAGAGGGAAAGATTGAAGCCGTAACGAC
1 GGGAAAGATTGAAGACGCAACGGTGAATCTTGTACCCTAGAGGGAAAGATTGAAGCCGCAACGAC
38369549 GAACCTTATACCTTAGAGATGTGAT
66 GAACCTTATACCTTAGAGATGTGAT
* * * * * *
38369574 GGGAAAGATT-AAAATCGCAACGGCGAATCTTGTACCCTAGAAGGAAAGGTTGAAGCCACAACGG
1 GGGAAAGATTGAAGA-CGCAACGGTGAATCTTGTACCCTAGAGGGAAAGATTGAAGCCGCAACGA
* * *
38369638 TGAACCTTATACCTTAGATATGTTAT
65 CGAACCTTATACCTTAGAGATGTGAT
* * * ** * * *
38369664 GGGAAAGATGGAA-ACCACAATGACGAATCTTATACCCTAAAGATGTGGAGGGAAAGGTTGAAGT
1 GGGAAAGATTGAAGA-CGCAACGGTGAATCTTGTACCCT----A----GAGGGAAAGATTGAAGC
* *
38369728 CGCAACGGCGAACCTTATATCTTAGAGATGTGAT
57 CGCAACGACGAACCTTATACCTTAGAGATGTGAT
* * * * * * * * *
38369762 AGGAAAGATTGAGGCCGTAACGGCGAATCTTATACCCAAGAGATGTGGAGGGAAAGGTTGAAGTC
1 GGGAAAGATTGAAGACGCAACGGTGAATCTTGTACCC--------TAGAGGGAAAGATTGAAGCC
*** * *
38369827 GCAACGGTAAACTTTATACCTTAGAGATGTGAA
58 GCAACGACGAACCTTATACCTTAGAGATGTGAT
* * * * * *
38369860 AGGAAAGATTGAAGCCACAACGGTGAATCTTATACCCTAGAGATGTAGAGGGAAAGGTTGAAGTC
1 GGGAAAGATTGAAGACGCAACGGTGAATCTTGTACCC--------TAGAGGGAAAGATTGAAGCC
* * *
38369925 GCAACGGCGAACCTTATACCTTAGAGATGTAAA
58 GCAACGACGAACCTTATACCTTAGAGATGTGAT
* * * *
38369958 GGGAAAGATTGACGCCGCAACGGCGAATCTTATACCCT
1 GGGAAAGATTGAAGACGCAACGGTGAATCTTGTACCCT
38369996 GAAGATGAGG
Statistics
Matches: 501, Mismatches: 80, Indels: 42
0.80 0.13 0.07
Matches are distributed among these distances:
89 4 0.01
90 252 0.50
91 4 0.01
94 1 0.00
98 239 0.48
106 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.22
Consensus pattern (90 bp):
GGGAAAGATTGAAGACGCAACGGTGAATCTTGTACCCTAGAGGGAAAGATTGAAGCCGCAACGAC
GAACCTTATACCTTAGAGATGTGAT
Found at i:38369515 original size:221 final size:221
Alignment explanation
Indices: 38369132--38369566 Score: 546
Period size: 221 Copynumber: 2.0 Consensus size: 221
38369122 AAGCGAAATG
* * * * *
38369132 TTGAAGTCGCAATGGCGAACCTCATGCCTTAAAGATGTGATGGGAAAGATTAAAGTCGCAATAGC
1 TTGAAGTCGCAACGACGAACCTCATACCTTAAAGATGTGATGGAAAAGATTAAAGACGCAATAGC
* * * * * * * *
38369197 GAATCTTGTACCCTAGAGGGAAAATTTGAAGCCGCAACGGTGAACCTTATACTTTAGAGATGTGA
66 GAATATTGTACCCTAAAGGCAAAAGTTGAAGCCGCAACCGCGAACCTTATACCTTAAAGATGTGA
* * * *
38369262 TGCAAAAGATTGAAGCCATAATGGCGAATCTTGTACCCTAGAGGGAAAGGTTGAAGCCGTAATGA
131 TGCAAAAGATTGAAGCCACAACGGCGAATCTTGTACCCTAGAGGGAAAGATTGAAGCCGTAACGA
* * *
38369327 TGAATCTTGTACCTTAGAGGGAAAGA
196 CGAACCTTATACCTTAGAGGGAAAGA
* * * * * * * *
38369353 TTGAAGTCGCAACGATGAACCTTATACCTTAGAGATGTGATGGAAAATATTGAAGACGTAATGGT
1 TTGAAGTCGCAACGACGAACCTCATACCTTAAAGATGTGATGGAAAAGATTAAAGACGCAATAGC
** *
38369418 GAATATTGTACCCTAAAGGCAAGGGTTGAAGCCGTAACCGCGAACCTTATACCTTAAAGATGTGA
66 GAATATTGTACCCTAAAGGCAAAAGTTGAAGCCGCAACCGCGAACCTTATACCTTAAAGATGTGA
** * * *
38369483 TGGGAAAGATTGAAGCCGCGACGGTGAATCTTGTACCCTAGAGGGAAAGATTGAAGCCGTAACGA
131 TGCAAAAGATTGAAGCCACAACGGCGAATCTTGTACCCTAGAGGGAAAGATTGAAGCCGTAACGA
38369548 CGAACCTTATACCTTAGAG
196 CGAACCTTATACCTTAGAG
38369567 ATGTGATGGG
Statistics
Matches: 178, Mismatches: 36, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
221 178 1.00
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.24
Consensus pattern (221 bp):
TTGAAGTCGCAACGACGAACCTCATACCTTAAAGATGTGATGGAAAAGATTAAAGACGCAATAGC
GAATATTGTACCCTAAAGGCAAAAGTTGAAGCCGCAACCGCGAACCTTATACCTTAAAGATGTGA
TGCAAAAGATTGAAGCCACAACGGCGAATCTTGTACCCTAGAGGGAAAGATTGAAGCCGTAACGA
CGAACCTTATACCTTAGAGGGAAAGA
Found at i:38369582 original size:49 final size:48
Alignment explanation
Indices: 38369523--38369993 Score: 416
Period size: 49 Copynumber: 9.8 Consensus size: 48
38369513 TTGTACCCTA
* *
38369523 GAGGGAAAGATTGAAGCCGTAACGACGAACCTTATACCTTAGAGATGT
1 GAGGGAAAGATTGAAGCCGCAACGGCGAACCTTATACCTTAGAGATGT
* ** * * *
38369571 GATGGGAAAGATTAAAATCGCAACGGCGAATCTTGTACCCT--AGA---
1 GA-GGGAAAGATTGAAGCCGCAACGGCGAACCTTATACCTTAGAGATGT
* * * *
38369615 -A-GGAAAGGTTGAAGCCACAACGGTGAACCTTATACCTTAGATATGT
1 GAGGGAAAGATTGAAGCCGCAACGGCGAACCTTATACCTTAGAGATGT
* * * * * * * * *
38369661 TATGGGAAAGATGGAAACCACAATGACGAATCTTATACCCTAAAGATGT
1 GA-GGGAAAGATTGAAGCCGCAACGGCGAACCTTATACCTTAGAGATGT
* * *
38369710 GGAGGGAAAGGTTGAAGTCGCAACGGCGAACCTTATATCTTAGAGATGT
1 -GAGGGAAAGATTGAAGCCGCAACGGCGAACCTTATACCTTAGAGATGT
* * * * **
38369759 GATAGGAAAGATTGAGGCCGTAACGGCGAATCTTATACCCAAGAGATGT
1 GA-GGGAAAGATTGAAGCCGCAACGGCGAACCTTATACCTTAGAGATGT
* * ** *
38369808 GGAGGGAAAGGTTGAAGTCGCAACGGTAAACTTTATACCTTAGAGATGT
1 -GAGGGAAAGATTGAAGCCGCAACGGCGAACCTTATACCTTAGAGATGT
* * * * *
38369857 GAAAGGAAAGATTGAAGCCACAACGGTGAATCTTATACCCTAGAGATGT
1 G-AGGGAAAGATTGAAGCCGCAACGGCGAACCTTATACCTTAGAGATGT
* *
38369906 AGAGGGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGT
1 -GAGGGAAAGATTGAAGCCGCAACGGCGAACCTTATACCTTAGAGATGT
* * *
38369955 AAAGGGAAAGATTGACGCCGCAACGGCGAATCTTATACC
1 -GAGGGAAAGATTGAAGCCGCAACGGCGAACCTTATACC
38369994 CTGAAGATGA
Statistics
Matches: 329, Mismatches: 80, Indels: 27
0.75 0.18 0.06
Matches are distributed among these distances:
41 28 0.09
43 3 0.01
47 4 0.01
48 5 0.02
49 285 0.87
50 4 0.01
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (48 bp):
GAGGGAAAGATTGAAGCCGCAACGGCGAACCTTATACCTTAGAGATGT
Found at i:38369744 original size:98 final size:98
Alignment explanation
Indices: 38369616--38370007 Score: 518
Period size: 98 Copynumber: 4.0 Consensus size: 98
38369606 TACCCTAGAA
* * * * * ** * *
38369616 GGAAAGGTTGAAGCCACAACGGTGAACCTTATACCTTAGATATGTTATGGGAAAGATGGAAACCA
1 GGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGTGAAAGGAAAGATTGAAGCCA
* *
38369681 CAATGACGAATCTTATACCCTAAAGATGTGGAG
66 CAACGGCGAATCTTATACCCTAAAGATGTGGAG
* * * *
38369714 GGAAAGGTTGAAGTCGCAACGGCGAACCTTATATCTTAGAGATGTGATAGGAAAGATTGAGGCCG
1 GGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGTGAAAGGAAAGATTGAAGCCA
*
38369779 TAACGGCGAATCTTATACCC-AAGAGATGTGGAG
66 CAACGGCGAATCTTATACCCTAA-AGATGTGGAG
** *
38369812 GGAAAGGTTGAAGTCGCAACGGTAAACTTTATACCTTAGAGATGTGAAAGGAAAGATTGAAGCCA
1 GGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGTGAAAGGAAAGATTGAAGCCA
* * *
38369877 CAACGGTGAATCTTATACCCTAGAGATGTAGAG
66 CAACGGCGAATCTTATACCCTAAAGATGTGGAG
*
38369910 GGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGT-AAAGGGAAAGATTGACGCC
1 GGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGTGAAA-GGAAAGATTGAAGCC
* * *
38369974 GCAACGGCGAATCTTATACCCTGAAGATGAGGAG
65 ACAACGGCGAATCTTATACCCTAAAGATGTGGAG
38370008 AAATAGATTG
Statistics
Matches: 256, Mismatches: 35, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
97 5 0.02
98 250 0.98
99 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (98 bp):
GGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGTGAAAGGAAAGATTGAAGCCA
CAACGGCGAATCTTATACCCTAAAGATGTGGAG
Found at i:38369913 original size:196 final size:187
Alignment explanation
Indices: 38369341--38369994 Score: 671
Period size: 196 Copynumber: 3.5 Consensus size: 187
38369331 TCTTGTACCT
* ** *
38369341 TAGAGGGAAAGATTGAAGTCGCAACGATGAACCTTATACCTTAGAGATGTGAT-GGAAAATATTG
1 TAGAGGGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGTGATAGG-AAAGATTG
* * * * * * * * ** * **
38369405 AAGACGTAATGGTGAATATTGTACCCTA-AAGGCAAGGGTTGAAGCCGTAACCGCGAACCTTATA
65 AAGCCGCAACGGCGAATCTTATACCCGAGAAGG-AAAGGTTGAAGCCACAACGGTAAACCTTATA
* * * *
38369469 CCTTAAAGATGTGATGGGAAAGATTGAAGCCGCGACGGTGAATCTTGTACCC-------
129 CCTTAGAGATGTGATGGGAAAGATTGAAGCCACAACGGTGAATCTTATACCCTAAGATG
* * * * * *
38369521 TAGAGGGAAAGATTGAAGCCGTAACGACGAACCTTATACCTTAGAGATGTGATGGGAAAGATTAA
1 TAGAGGGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGTGATAGGAAAGATTGA
** * * *
38369586 AATCGCAACGGCGAATCTTGTACCCTAGAAGGAAAGGTTGAAGCCACAACGGTGAACCTTATACC
66 AGCCGCAACGGCGAATCTTATACCCGAGAAGGAAAGGTTGAAGCCACAACGGTAAACCTTATACC
* * * * * **
38369651 TTAGATATGTTATGGGAAAGATGGAAACCACAATGACGAATCTTATACCCTAAAGATG
131 TTAGAGATGTGATGGGAAAGATTGAAGCCACAACGGTGAATCTTATACCCT-AAGATG
* *
38369709 TGGAGGGAAAGGTTGAAGTCGCAACGGCGAACCTTATATCTTAGAGATGTGATAGGAAAGATTGA
1 TAGAGGGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGTGATAGGAAAGATTGA
* * * *
38369774 GGCCGTAACGGCGAATCTTATACCCAAGAGATGTGGAGGGAAAGGTTGAAGTCGCAACGGTAAAC
66 AGCCGCAACGGCGAATCTTATACCC--GAGA-----A-GGAAAGGTTGAAGCCACAACGGTAAAC
* **
38369839 TTTATACCTTAGAGATGTGAAAGGAAAGATTGAAGCCACAACGGTGAATCTTATACCCTAGAGAT
123 CTTATACCTTAGAGATGTGATGGGAAAGATTGAAGCCACAACGGTGAATCTTATACCCTA-AGAT
38369904 G
187 G
*
38369905 TAGAGGGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGT-AAAGGGAAAGATTG
1 TAGAGGGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGTGATA-GGAAAGATTG
*
38369969 ACGCCGCAACGGCGAATCTTATACCC
65 AAGCCGCAACGGCGAATCTTATACCC
38369995 TGAAGATGAG
Statistics
Matches: 395, Mismatches: 59, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
180 145 0.37
181 6 0.02
188 77 0.19
190 3 0.01
195 4 0.01
196 160 0.41
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.22
Consensus pattern (187 bp):
TAGAGGGAAAGGTTGAAGTCGCAACGGCGAACCTTATACCTTAGAGATGTGATAGGAAAGATTGA
AGCCGCAACGGCGAATCTTATACCCGAGAAGGAAAGGTTGAAGCCACAACGGTAAACCTTATACC
TTAGAGATGTGATGGGAAAGATTGAAGCCACAACGGTGAATCTTATACCCTAAGATG
Found at i:38372175 original size:23 final size:25
Alignment explanation
Indices: 38372132--38372180 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
38372122 AACCCTTTTA
38372132 TTTTATTTTTGTTAAAATTAA-CCC
1 TTTTATTTTTGTTAAAATTAATCCC
38372156 TTTTA-TTTT-TTAAAATTTAATCCC
1 TTTTATTTTTGTTAAAA-TTAATCCC
38372180 T
1 T
38372181 CACTATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.26
23 8 0.35
24 9 0.39
ACGTcount: A:0.29, C:0.12, G:0.02, T:0.57
Consensus pattern (25 bp):
TTTTATTTTTGTTAAAATTAATCCC
Found at i:38373177 original size:25 final size:26
Alignment explanation
Indices: 38373149--38373197 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
38373139 TGACGACTTC
*
38373149 ATTTTTTTTTT-AAATAAAATTCGGG
1 ATTTTTTTTTTAAAACAAAATTCGGG
38373174 ATTTTTTTTTTAAAACAAAATTCG
1 ATTTTTTTTTTAAAACAAAATTCG
38373198 ACAGTTGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.51
Consensus pattern (26 bp):
ATTTTTTTTTTAAAACAAAATTCGGG
Found at i:38376890 original size:6 final size:6
Alignment explanation
Indices: 38376879--38376903 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
38376869 ATTTAAATAA
38376879 TATATT TATATT TATATT TATATT T
1 TATATT TATATT TATATT TATATT T
38376904 TAAAATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATATT
Found at i:38377095 original size:29 final size:29
Alignment explanation
Indices: 38377063--38377137 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
38377053 TCAAATTGTA
* *
38377063 TTTTAGTTATTTATGTTTGAAATGTTACG
1 TTTTAGTCATTTATGTTTGAAATATTACG
38377092 TTTTAGTCATTTATGTTTGAAATATTACG
1 TTTTAGTCATTTATGTTTGAAATATTACG
* *
38377121 TTTTAATCACTTATGTT
1 TTTTAGTCATTTATGTT
38377138 ATTATTTTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.25, C:0.07, G:0.13, T:0.55
Consensus pattern (29 bp):
TTTTAGTCATTTATGTTTGAAATATTACG
Found at i:38378274 original size:24 final size:25
Alignment explanation
Indices: 38378221--38378277 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
38378211 ATTAATGCAC
38378221 GTAAAAATTTTACGTATTACATTTA
1 GTAAAAATTTTACGTATTACATTTA
*
38378246 GTAAAAATTTTAGGTATTACATTTA
1 GTAAAAATTTTACGTATTACATTTA
38378271 -TAAAAAT
1 GTAAAAAT
38378278 ATATATGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 7 0.23
25 24 0.77
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (25 bp):
GTAAAAATTTTACGTATTACATTTA
Found at i:38380192 original size:4 final size:4
Alignment explanation
Indices: 38380185--38380215 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
38380175 AAATAATGTA
38380185 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
38380216 GCTACTATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:38393476 original size:3 final size:3
Alignment explanation
Indices: 38393470--38393497 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
38393460 GATGATGATG
38393470 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
38393498 CCCTTTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:38393842 original size:15 final size:16
Alignment explanation
Indices: 38393824--38393853 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
38393814 TATTTTTATT
38393824 AATT-AAAATTTAAAA
1 AATTAAAAATTTAAAA
38393839 AATTAAAAATTTAAA
1 AATTAAAAATTTAAA
38393854 TAGAAAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATTAAAAATTTAAAA
Found at i:38394065 original size:31 final size:32
Alignment explanation
Indices: 38394000--38394067 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 32
38393990 AAAATCAGAG
* * **
38394000 AAAATATTTTTAGATCCCTTAAAAGTTGGTAA
1 AAAATATTTTTAGAGCCCTTAAAAGCTGAAAA
*
38394032 AAAATATTTTT-GGGCCCTTAAAAGCTGAAAA
1 AAAATATTTTTAGAGCCCTTAAAAGCTGAAAA
38394063 AAAAT
1 AAAAT
38394068 TTACCCTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
31 20 0.65
32 11 0.35
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.32
Consensus pattern (32 bp):
AAAATATTTTTAGAGCCCTTAAAAGCTGAAAA
Found at i:38394393 original size:26 final size:26
Alignment explanation
Indices: 38394343--38394393 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
38394333 TCATAGTAGT
* * * *
38394343 TGATTTGATCAATTAATTTTGTTAAC
1 TGATTTAATCAACTAATTCTATTAAC
38394369 TGATTTAATCAACTAATTCTATTAA
1 TGATTTAATCAACTAATTCTATTAA
38394394 GTGTTTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (26 bp):
TGATTTAATCAACTAATTCTATTAAC
Found at i:38394929 original size:26 final size:27
Alignment explanation
Indices: 38394896--38394953 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
38394886 ACAATGTTGA
38394896 TTTTTGTAGATTCACGATGGAG-TTTT
1 TTTTTGTAGATTCACGATGGAGCTTTT
* * * *
38394922 TTTTTGTATATTTATGGTGGAGCTTTT
1 TTTTTGTAGATTCACGATGGAGCTTTT
38394949 TTTTT
1 TTTTT
38394954 TTAAAATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.16, C:0.05, G:0.21, T:0.59
Consensus pattern (27 bp):
TTTTTGTAGATTCACGATGGAGCTTTT
Found at i:38398809 original size:30 final size:28
Alignment explanation
Indices: 38398742--38398811 Score: 70
Period size: 30 Copynumber: 2.4 Consensus size: 28
38398732 ATAGAAAATC
38398742 TACAATATTTTTCTAAATAATTTAAAAA
1 TACAATATTTTTCTAAATAATTTAAAAA
* ** *
38398770 T-CACTTATTTTTCTAAACATTTTTTTAAAA
1 TACA-ATATTTTTCT-AA-ATAATTTAAAAA
38398800 TACAATATTTTT
1 TACAATATTTTT
38398812 ACACTAATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
27 2 0.06
28 10 0.30
29 2 0.06
30 17 0.52
31 2 0.06
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (28 bp):
TACAATATTTTTCTAAATAATTTAAAAA
Found at i:38400152 original size:26 final size:27
Alignment explanation
Indices: 38400092--38400151 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
38400082 ACACAGATGA
*
38400092 AGGGTTTTGAAGTGGCGACACTCTTGG
1 AGGGTTTTGAAGTGACGACACTCTTGG
*
38400119 AGGGTTTTGAAGTGACGGCAC-CTT-G
1 AGGGTTTTGAAGTGACGACACTCTTGG
*
38400144 AGGTTTTT
1 AGGGTTTT
38400152 TTGCCACTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 8 0.27
26 3 0.10
27 19 0.63
ACGTcount: A:0.18, C:0.13, G:0.35, T:0.33
Consensus pattern (27 bp):
AGGGTTTTGAAGTGACGACACTCTTGG
Found at i:38400354 original size:20 final size:19
Alignment explanation
Indices: 38400298--38400364 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 19
38400288 AAACGGGCAC
*
38400298 GAGAGAAAAAAAGAAAGAAA
1 GAGAGAAAGAAAG-AAGAAA
*
38400318 GA-AGGAAA-AAGGAAGAAA
1 GAGA-GAAAGAAAGAAGAAA
*
38400336 GAGAGGAAAGAAAGAAGAAG
1 GAGA-GAAAGAAAGAAGAAA
38400356 GAGAGAAAG
1 GAGAGAAAG
38400365 CTAGTAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 8 0.20
19 15 0.37
20 18 0.44
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (19 bp):
GAGAGAAAGAAAGAAGAAA
Found at i:38400954 original size:17 final size:17
Alignment explanation
Indices: 38400934--38400979 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
38400924 TAATTTAAAG
38400934 TTATATTTGTTTAG-TAT
1 TTAT-TTTGTTTAGTTAT
*
38400951 TTATTATT-TTAAGTTAT
1 TTATT-TTGTTTAGTTAT
38400968 TTATTTTGTTTA
1 TTATTTTGTTTA
38400980 ATTTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (17 bp):
TTATTTTGTTTAGTTAT
Found at i:38400991 original size:30 final size:32
Alignment explanation
Indices: 38400934--38401002 Score: 81
Period size: 30 Copynumber: 2.2 Consensus size: 32
38400924 TAATTTAAAG
*
38400934 TTATATTTGTTTAGTATTTATTATTTTAAGTT-AT
1 TTAT-TTTGTTTAG-ATTTAATATTTTAA-TTGAT
38400968 TTATTTTGTTTA-ATTTAAT-TTTTAATTGAT
1 TTATTTTGTTTAGATTTAATATTTTAATTGAT
38400998 TTATT
1 TTATT
38401003 ATTTAATATT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 2 0.06
30 13 0.39
31 6 0.18
33 8 0.24
34 4 0.12
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (32 bp):
TTATTTTGTTTAGATTTAATATTTTAATTGAT
Found at i:38401262 original size:17 final size:17
Alignment explanation
Indices: 38401240--38401273 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
38401230 TTCTCTCTTT
38401240 CTTCTTTCTTTCCTCTC
1 CTTCTTTCTTTCCTCTC
*
38401257 CTTCTTTCTTTCTTCTC
1 CTTCTTTCTTTCCTCTC
38401274 TGGTGCCTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (17 bp):
CTTCTTTCTTTCCTCTC
Found at i:38401267 original size:21 final size:20
Alignment explanation
Indices: 38401232--38401270 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
38401222 TACTAGTTTT
*
38401232 CTCTCTTTCTTCTTTCTTTC
1 CTCTCCTTCTTCTTTCTTTC
38401252 CTCTCCTTCTTTCTTTCTT
1 CTCTCCTTC-TTCTTTCTT
38401271 CTCTGGTGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (20 bp):
CTCTCCTTCTTCTTTCTTTC
Found at i:38404295 original size:86 final size:87
Alignment explanation
Indices: 38404192--38404438 Score: 250
Period size: 86 Copynumber: 2.8 Consensus size: 87
38404182 ATTAGGGGTG
*
38404192 GTTCAAGTATCCAATTGAGTGCAAAAAAACTCAGGGGCTTAATT-TTTTTTTGAAAAAGTTTGAG
1 GTTCAAGTATCCAATTGAATG-AAAAAAA-TCAGGGGCTTAATTCTTTTTTTGAAAAAGTTTGAG
38404256 GGTTTTTTT-ATGCATTTTGA-AA
64 GGTTTTTTTAATGCATTTTGATAA
* ** * * * *
38404278 GTTCAAGTATCCAATTGAATGTAAAAAATGTGGGGTTTAATTGCTTTTTCTGAAAAAGTTCGAGA
1 GTTCAAGTATCCAATTGAATGAAAAAAATCAGGGGCTTAATT-CTTTTTTTGAAAAAGTTTGAGG
*
38404343 ATTTTTTTAATGCATTTTGATAA
65 GTTTTTTTAATGCATTTTGATAA
* * * * * * * *
38404366 -TTCAAGTACCCGATTAAATTAAAAAAAAAGCAGGGCCTTAATTACTTTTATTGAAAACGTTTGA
1 GTTCAAGTATCCAATTGAA-T-GAAAAAAATCAGGGGCTTAATT-CTTTTTTTGAAAAAGTTTGA
*
38404430 GGGCTTTTT
63 GGGTTTTTT
38404439 ACACCCTTAA
Statistics
Matches: 128, Mismatches: 27, Indels: 9
0.78 0.16 0.05
Matches are distributed among these distances:
84 11 0.09
85 6 0.05
86 45 0.35
87 26 0.20
88 3 0.02
89 37 0.29
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (87 bp):
GTTCAAGTATCCAATTGAATGAAAAAAATCAGGGGCTTAATTCTTTTTTTGAAAAAGTTTGAGGG
TTTTTTTAATGCATTTTGATAA
Found at i:38407375 original size:23 final size:23
Alignment explanation
Indices: 38407311--38407367 Score: 98
Period size: 22 Copynumber: 2.5 Consensus size: 23
38407301 AGCACGTTTC
*
38407311 GTGCCCTCTGTTCAGCACTGTGT
1 GTGCCCTCTGTTCAGCACTTTGT
38407334 GTG-CCTCTGTTCAGCACTTTGT
1 GTGCCCTCTGTTCAGCACTTTGT
38407356 GTGCCCTCTGTT
1 GTGCCCTCTGTT
38407368 AAGTACTTCG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 21 0.66
23 11 0.34
ACGTcount: A:0.07, C:0.30, G:0.25, T:0.39
Consensus pattern (23 bp):
GTGCCCTCTGTTCAGCACTTTGT
Found at i:38411525 original size:21 final size:21
Alignment explanation
Indices: 38411479--38411527 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
38411469 GTTGTGAATG
*
38411479 TTCTACCGATACAACCCTATC
1 TTCTACCGATACAACCATATC
*
38411500 ATCTACCGATACAA-CATATC
1 TTCTACCGATACAACCATATC
38411520 TTTCTACC
1 -TTCTACC
38411528 CATATCTCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.31, C:0.35, G:0.04, T:0.31
Consensus pattern (21 bp):
TTCTACCGATACAACCATATC
Found at i:38424815 original size:32 final size:32
Alignment explanation
Indices: 38424774--38424837 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
38424764 AATGGGTGAG
38424774 ATTAATTAAAGTTAAAAGGGATTAATTAAGCT
1 ATTAATTAAAGTTAAAAGGGATTAATTAAGCT
38424806 ATTAATTAAAGTTAAAAGGGATTAATTAAGCT
1 ATTAATTAAAGTTAAAAGGGATTAATTAAGCT
38424838 TAATAATGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.47, C:0.03, G:0.16, T:0.34
Consensus pattern (32 bp):
ATTAATTAAAGTTAAAAGGGATTAATTAAGCT
Found at i:38430888 original size:20 final size:21
Alignment explanation
Indices: 38430863--38430901 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
38430853 TGACCAAACC
38430863 ATTGACCATTGACT-TTTTCT
1 ATTGACCATTGACTCTTTTCT
*
38430883 ATTGACCGTTGACTCTTTT
1 ATTGACCATTGACTCTTTT
38430902 AGGGAACCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.49
Consensus pattern (21 bp):
ATTGACCATTGACTCTTTTCT
Found at i:38434345 original size:21 final size:21
Alignment explanation
Indices: 38434319--38434372 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
38434309 CTATAAGCAG
38434319 AACTACCGATACTTATGATGC
1 AACTACCGATACTTATGATGC
38434340 AACTACCGATACTTATGATGC
1 AACTACCGATACTTATGATGC
38434361 AACTACCGATAC
1 AACTACCGATAC
38434373 AACTCAAGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (21 bp):
AACTACCGATACTTATGATGC
Found at i:38434954 original size:28 final size:28
Alignment explanation
Indices: 38434914--38434997 Score: 116
Period size: 28 Copynumber: 3.0 Consensus size: 28
38434904 GATATTCGAT
* *
38434914 TTACT-CCTCATTGACCTAAAGGTTATGC
1 TTACTCCCT-ATTGACCCAAAGGTCATGC
*
38434942 TTACTCCCTATTGACCCGAAGGTCATGC
1 TTACTCCCTATTGACCCAAAGGTCATGC
*
38434970 TTACTCTCTATTGACCCAAAGGTCATGC
1 TTACTCCCTATTGACCCAAAGGTCATGC
38434998 CTGGTACCAG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
28 47 0.94
29 3 0.06
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (28 bp):
TTACTCCCTATTGACCCAAAGGTCATGC
Found at i:38435327 original size:20 final size:19
Alignment explanation
Indices: 38435294--38435332 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
38435284 CTCGTTGTTT
38435294 TTATCTTTCACATTTCCAA
1 TTATCTTTCACATTTCCAA
*
38435313 TTATCGTTTCTCATTTCCAA
1 TTATC-TTTCACATTTCCAA
38435333 AAATCATTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.23, C:0.26, G:0.03, T:0.49
Consensus pattern (19 bp):
TTATCTTTCACATTTCCAA
Found at i:38443125 original size:5 final size:5
Alignment explanation
Indices: 38443115--38443181 Score: 116
Period size: 5 Copynumber: 13.4 Consensus size: 5
38443105 TAAAGGATGG
* *
38443115 GTTGT GTTGT GTTGT GTTGT GTTGT GTTGC GTTGT GTTGT GTTGC GTTGT
1 GTTGT GTTGT GTTGT GTTGT GTTGT GTTGT GTTGT GTTGT GTTGT GTTGT
38443165 GTTGT GTTGT GTTGT GT
1 GTTGT GTTGT GTTGT GT
38443182 AAAGCTTTGG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 58 1.00
ACGTcount: A:0.00, C:0.03, G:0.40, T:0.57
Consensus pattern (5 bp):
GTTGT
Found at i:38444990 original size:3 final size:3
Alignment explanation
Indices: 38444982--38445014 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
38444972 TTAAACTAAA
38444982 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
38445015 GGTCAAATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:38445303 original size:17 final size:18
Alignment explanation
Indices: 38445240--38445304 Score: 71
Period size: 20 Copynumber: 3.5 Consensus size: 18
38445230 AATATATATT
38445240 ATAATTTCTAT-ATTTTTA
1 ATAATTT-TATAATTTTTA
*
38445258 ATAATGTTAATAATTTATTA
1 ATAAT-TTTATAATTT-TTA
38445278 ATGAATTTTATAATTTTTA
1 AT-AATTTTATAATTTTTA
38445297 A-AATTTTA
1 ATAATTTTA
38445305 AATATTAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
17 7 0.17
18 7 0.17
19 10 0.24
20 14 0.34
21 3 0.07
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (18 bp):
ATAATTTTATAATTTTTA
Found at i:38446955 original size:24 final size:24
Alignment explanation
Indices: 38446923--38446970 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
38446913 GACAACTTTG
*
38446923 GCTCTTACGAGCCCAAAATGGTTA
1 GCTCTTACGAACCCAAAATGGTTA
*
38446947 GCTCTTACGAACCCAGAATGGTTA
1 GCTCTTACGAACCCAAAATGGTTA
38446971 ACCAGTATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (24 bp):
GCTCTTACGAACCCAAAATGGTTA
Found at i:38449730 original size:25 final size:25
Alignment explanation
Indices: 38449677--38449738 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
38449667 AGTACTGAAT
* *
38449677 AGAGAGCACATAAGTGCTGGGCAAC
1 AGAGAGCACAAAAGTGCTAGGCAAC
*
38449702 AGAGAGCACACAAAGTGCTAGTCAA-
1 AGAGAGCACA-AAAGTGCTAGGCAAC
38449727 AGAGTA-CACAAA
1 AGAG-AGCACAAA
38449739 GTACTGAGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
24 2 0.06
25 18 0.56
26 12 0.38
ACGTcount: A:0.44, C:0.19, G:0.26, T:0.11
Consensus pattern (25 bp):
AGAGAGCACAAAAGTGCTAGGCAAC
Found at i:38449759 original size:39 final size:39
Alignment explanation
Indices: 38449705--38449779 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
38449695 GGGCAACAGA
* *
38449705 GAGCACACAAAGTGCTAGTCAAAGAGTACACAAAGTACT
1 GAGCACACAAAGTGCTAATCAAAGAGCACACAAAGTACT
* *
38449744 GAGCACACAAAGTGCTAATCAGAGAGCACACGAAGT
1 GAGCACACAAAGTGCTAATCAAAGAGCACACAAAGT
38449780 GCTAATAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.13
Consensus pattern (39 bp):
GAGCACACAAAGTGCTAATCAAAGAGCACACAAAGTACT
Found at i:38449774 original size:23 final size:22
Alignment explanation
Indices: 38449699--38449864 Score: 103
Period size: 23 Copynumber: 7.5 Consensus size: 22
38449689 AGTGCTGGGC
38449699 AACAGAGAGCACACAAAGTGCT
1 AACAGAGAGCACACAAAGTGCT
* * *
38449721 AGTCAAAGAGTACACAAA--G-T
1 A-ACAGAGAGCACACAAAGTGCT
*
38449741 -AC--TGAGCACACAAAGTGCT
1 AACAGAGAGCACACAAAGTGCT
*
38449760 AATCAGAGAGCACACGAAGTGCTAAT
1 AA-CAGAGAGCACACAAAGTGC---T
* * *
38449786 AACAGAAAGCACGAGACA-TGCT
1 AACAGAGAGCAC-ACAAAGTGCT
*
38449808 GAACAGAGAGCACACATAGTGCT
1 -AACAGAGAGCACACAAAGTGCT
*
38449831 GAACAGAGAGCACACACAGTGCT
1 -AACAGAGAGCACACAAAGTGCT
*
38449854 AAACAAAGAGC
1 -AACAGAGAGC
38449865 GCGCTAGTGT
Statistics
Matches: 112, Mismatches: 18, Indels: 27
0.71 0.11 0.17
Matches are distributed among these distances:
16 10 0.09
18 2 0.02
19 1 0.01
20 2 0.02
21 2 0.02
22 5 0.04
23 73 0.65
25 12 0.11
26 5 0.04
ACGTcount: A:0.44, C:0.22, G:0.23, T:0.11
Consensus pattern (22 bp):
AACAGAGAGCACACAAAGTGCT
Found at i:38450322 original size:106 final size:106
Alignment explanation
Indices: 38450137--38450348 Score: 424
Period size: 106 Copynumber: 2.0 Consensus size: 106
38450127 ACCAAAATTT
38450137 TTAGTTTAGCTAATTTGTACAGTAAATTCTTCCAATTTACCCCTTCTCTGCTGCTTGACAGTTTC
1 TTAGTTTAGCTAATTTGTACAGTAAATTCTTCCAATTTACCCCTTCTCTGCTGCTTGACAGTTTC
38450202 GACCTTTCTTCACTAAAAATGATCTATCTTTTTGTACAGAG
66 GACCTTTCTTCACTAAAAATGATCTATCTTTTTGTACAGAG
38450243 TTAGTTTAGCTAATTTGTACAGTAAATTCTTCCAATTTACCCCTTCTCTGCTGCTTGACAGTTTC
1 TTAGTTTAGCTAATTTGTACAGTAAATTCTTCCAATTTACCCCTTCTCTGCTGCTTGACAGTTTC
38450308 GACCTTTCTTCACTAAAAATGATCTATCTTTTTGTACAGAG
66 GACCTTTCTTCACTAAAAATGATCTATCTTTTTGTACAGAG
38450349 ATCAAATGAT
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 106 1.00
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.42
Consensus pattern (106 bp):
TTAGTTTAGCTAATTTGTACAGTAAATTCTTCCAATTTACCCCTTCTCTGCTGCTTGACAGTTTC
GACCTTTCTTCACTAAAAATGATCTATCTTTTTGTACAGAG
Found at i:38465271 original size:16 final size:16
Alignment explanation
Indices: 38465250--38465280 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
38465240 GTGGCTTCTG
*
38465250 CTTTAATTTTGTTTTA
1 CTTTAATATTGTTTTA
38465266 CTTTAATATTGTTTT
1 CTTTAATATTGTTTT
38465281 GAGTTATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.68
Consensus pattern (16 bp):
CTTTAATATTGTTTTA
Found at i:38465940 original size:16 final size:16
Alignment explanation
Indices: 38465908--38465946 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
38465898 TTACATGTAA
*
38465908 AATAATTTTTTTATTT
1 AATATTTTTTTTATTT
38465924 AA-ATTTTTTTTATTTT
1 AATATTTTTTTTA-TTT
38465940 AATATTT
1 AATATTT
38465947 AATTGATGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 9 0.45
16 7 0.35
17 4 0.20
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
AATATTTTTTTTATTT
Found at i:38471993 original size:5 final size:5
Alignment explanation
Indices: 38471983--38472058 Score: 125
Period size: 5 Copynumber: 15.2 Consensus size: 5
38471973 GGGCTCATTG
* *
38471983 GGCCA GGCCA GGCCA GGCCG GGCCA GGCCA GGCCA GGCCG GGCCA GGCCA
1 GGCCA GGCCA GGCCA GGCCA GGCCA GGCCA GGCCA GGCCA GGCCA GGCCA
*
38472033 GGCCA GGCCG GGCCA GGCCA GGCCA G
1 GGCCA GGCCA GGCCA GGCCA GGCCA G
38472059 AGTTAAAAGT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 65 1.00
ACGTcount: A:0.16, C:0.39, G:0.45, T:0.00
Consensus pattern (5 bp):
GGCCA
Found at i:38472007 original size:20 final size:20
Alignment explanation
Indices: 38471982--38472058 Score: 154
Period size: 20 Copynumber: 3.9 Consensus size: 20
38471972 TGGGCTCATT
38471982 GGGCCAGGCCAGGCCAGGCC
1 GGGCCAGGCCAGGCCAGGCC
38472002 GGGCCAGGCCAGGCCAGGCC
1 GGGCCAGGCCAGGCCAGGCC
38472022 GGGCCAGGCCAGGCCAGGCC
1 GGGCCAGGCCAGGCCAGGCC
38472042 GGGCCAGGCCAGGCCAG
1 GGGCCAGGCCAGGCCAG
38472059 AGTTAAAAGT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.16, C:0.39, G:0.45, T:0.00
Consensus pattern (20 bp):
GGGCCAGGCCAGGCCAGGCC
Found at i:38472321 original size:18 final size:18
Alignment explanation
Indices: 38472298--38472340 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
38472288 GAATAGGTTT
38472298 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
* *
38472316 TTAATTGAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
38472334 TTAATTA
1 TTAATTA
38472341 CACCTTGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:38476025 original size:12 final size:12
Alignment explanation
Indices: 38476008--38476034 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
38475998 AAATATTTTT
38476008 TTTCTTTTTCAA
1 TTTCTTTTTCAA
38476020 TTTCTTTTTCAA
1 TTTCTTTTTCAA
38476032 TTT
1 TTT
38476035 TTATCTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTCTTTTTCAA
Found at i:38476991 original size:6 final size:6
Alignment explanation
Indices: 38476980--38477048 Score: 79
Period size: 6 Copynumber: 11.5 Consensus size: 6
38476970 AGTGCATAAT
* * *
38476980 AAAATA AAAATA AAAATA AAAAT- AAAATG AAAATG AAAATG AAAATGA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT-A
38477028 AAAA-A ATAAATA AAAATA AAA
1 AAAATA A-AAATA AAAATA AAA
38477049 TATAGAACTA
Statistics
Matches: 58, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
5 7 0.12
6 45 0.78
7 6 0.10
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:38477003 original size:18 final size:18
Alignment explanation
Indices: 38476980--38477048 Score: 79
Period size: 17 Copynumber: 3.8 Consensus size: 18
38476970 AGTGCATAAT
38476980 AAAATAAAAATAAAAATA
1 AAAATAAAAATAAAAATA
* *
38476998 AAAAT-AAAATGAAAATG
1 AAAATAAAAATAAAAATA
*
38477015 AAAATGAAAATGAAAAA-A
1 AAAATAAAAAT-AAAAATA
38477033 ATAAATAAAAATAAAA
1 A-AAATAAAAATAAAA
38477049 TATAGAACTA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 15 0.35
18 15 0.35
19 13 0.30
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (18 bp):
AAAATAAAAATAAAAATA
Found at i:38477495 original size:53 final size:54
Alignment explanation
Indices: 38477387--38477509 Score: 139
Period size: 53 Copynumber: 2.3 Consensus size: 54
38477377 GACCACTTTT
* * *
38477387 TTTTTTTAAATTTTTTTCAATTTTTTAAGTAATAAAAAATAACAATTAATGTAA
1 TTTTTTGAATTTTTTTTCAATTTTTTAAGTAATAAAAAATAACAATTAATCTAA
38477441 TTTTTTGAAGTTTTTTTTCAATTTTTTTAAAGTAAT-AAAAAT-A-AA-T-ATACTAA
1 TTTTTTGAA-TTTTTTTTCAA-TTTTTT-AAGTAATAAAAAATAACAATTAAT-CTAA
*
38477494 TTTTTTTAATTTTTTT
1 TTTTTTGAATTTTTTT
38477510 ATTTTTTTGA
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
52 9 0.15
53 12 0.20
54 10 0.16
55 11 0.18
56 12 0.20
57 7 0.11
ACGTcount: A:0.37, C:0.03, G:0.04, T:0.55
Consensus pattern (54 bp):
TTTTTTGAATTTTTTTTCAATTTTTTAAGTAATAAAAAATAACAATTAATCTAA
Found at i:38477505 original size:9 final size:9
Alignment explanation
Indices: 38477491--38477529 Score: 62
Period size: 9 Copynumber: 4.3 Consensus size: 9
38477481 ATAAATATAC
38477491 TAATTTTTT
1 TAATTTTTT
38477500 TAATTTTTT
1 TAATTTTTT
38477509 T-ATTTTTT
1 TAATTTTTT
38477517 TGAATTTTTT
1 T-AATTTTTT
38477527 TAA
1 TAA
38477530 GATAAAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.29
9 12 0.43
10 8 0.29
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (9 bp):
TAATTTTTT
Found at i:38488060 original size:59 final size:58
Alignment explanation
Indices: 38487992--38488222 Score: 209
Period size: 59 Copynumber: 3.9 Consensus size: 58
38487982 AATTTTGGAC
*
38487992 ATTTTAGGGTAAAATGGTAATTTTAGGAAAG-TTTAGGGTCAAAAATAGAATTTTTAGA
1 ATTTTAGGGTAAAATGGTAATTTTA-GAAAGTTTTAGGGTTAAAAATAGAATTTTTAGA
* * *
38488050 TATTTTAGGGTAAAATGGTAATTTTTA-AAAGTTTTAAGGTTAAAAAT-GAAATTTATAAA
1 -ATTTTAGGGTAAAATGGTAA-TTTTAGAAAGTTTTAGGGTTAAAAATAG-AATTTTTAGA
*** * * *
38488109 CATTCGGGGGTAAAATGGTATTTTTTGAAAGTTTTGGGGTTAAAAATAGAATTTTTAGA
1 -ATTTTAGGGTAAAATGGTAATTTTAGAAAGTTTTAGGGTTAAAAATAGAATTTTTAGA
* * * *** * *
38488168 AGTTCAGGGCTAAAAAT-GTAATTTTTGAAAAAATCAGGGTTAAAAATGGAATTTT
1 ATTTTAGGG-T-AAAATGGTAATTTTAGAAAGTTTTAGGGTTAAAAATAGAATTTT
38488223 AAAAAGTTCG
Statistics
Matches: 140, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
58 14 0.10
59 115 0.82
60 11 0.08
ACGTcount: A:0.39, C:0.03, G:0.21, T:0.37
Consensus pattern (58 bp):
ATTTTAGGGTAAAATGGTAATTTTAGAAAGTTTTAGGGTTAAAAATAGAATTTTTAGA
Found at i:38488076 original size:29 final size:28
Alignment explanation
Indices: 38487969--38488074 Score: 115
Period size: 28 Copynumber: 3.7 Consensus size: 28
38487959 TGGATACCCG
* * *
38487969 AGGGTGAAATGGTAATTTTGGACATTTT
1 AGGGTAAAATGGTAATTTTAGAAATTTT
*
38487997 AGGGTAAAATGGTAATTTTAGGAAAGTTT
1 AGGGTAAAATGGTAATTTTA-GAAATTTT
* *
38488026 AGGGTCAAAAATAG-AATTTTTAGATATTTT
1 AGGGT--AAAATGGTAA-TTTTAGAAATTTT
38488056 AGGGTAAAATGGTAATTTT
1 AGGGTAAAATGGTAATTTT
38488075 TAAAAGTTTT
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
28 28 0.43
29 13 0.20
30 13 0.20
31 11 0.17
ACGTcount: A:0.36, C:0.02, G:0.25, T:0.38
Consensus pattern (28 bp):
AGGGTAAAATGGTAATTTTAGAAATTTT
Found at i:38488154 original size:118 final size:118
Alignment explanation
Indices: 38487997--38488343 Score: 325
Period size: 118 Copynumber: 3.0 Consensus size: 118
38487987 TGGACATTTT
* *
38487997 AGGGTAAAATGGTAATTTTAGGAAAGTTTAGGGTCAAAAATAGAATTTTTAGATATTTTAGGG-T
1 AGGGTAAAATGGTAATTTTAGGAAAGTTTAGGGTCAAAAATAGAATTTTTAGA-AGTTCAGGGCT
** * *
38488061 -AAAATGGTAATTTTT-AAAAGTTTTAAGGTTAAAAATGAAATTTATAAACA-TTCG
65 AAAAAT-GTAATTTTTGAAAA-AATCAAGGTTAAAAATGAAATTT-TAAAAAGTTCG
* ** * *
38488115 GGGGTAAAATGGT-ATTTTTTGAAAGTTTTGGGGTTAAAAATAGAATTTTTAGAAGTTCAGGGCT
1 AGGGTAAAATGGTAATTTTAGGAAAG-TTTAGGGTCAAAAATAGAATTTTTAGAAGTTCAGGGCT
* *
38488179 AAAAATGTAATTTTTGAAAAAATCAGGGTTAAAAATGGAATTTTAAAAAGTTCG
65 AAAAATGTAATTTTTGAAAAAATCAAGGTTAAAAATGAAATTTTAAAAAGTTCG
* * * * * * * *
38488233 AGGGTAAAAAT-GTAATTTTCGGAGAA-ATCAGAGT-AAAAATGGAATTTTGAAAAGTT-AGGGG
1 AGGGT-AAAATGGTAATTTTAGGA-AAGTTTAGGGTCAAAAATAGAATTTTTAGAAGTTCAGGGC
* * * * * *
38488294 TAAAAATTTAATTTTTGGAGAAATCGAGGTAAAAAATAAAATTTTAAAAA
64 TAAAAATGTAATTTTTGAAAAAATCAAGGTTAAAAATGAAATTTTAAAAA
38488344 AGTTTGGGTG
Statistics
Matches: 189, Mismatches: 32, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
116 46 0.24
117 41 0.22
118 79 0.42
119 21 0.11
120 2 0.01
ACGTcount: A:0.43, C:0.03, G:0.21, T:0.33
Consensus pattern (118 bp):
AGGGTAAAATGGTAATTTTAGGAAAGTTTAGGGTCAAAAATAGAATTTTTAGAAGTTCAGGGCTA
AAAATGTAATTTTTGAAAAAATCAAGGTTAAAAATGAAATTTTAAAAAGTTCG
Found at i:38488164 original size:30 final size:30
Alignment explanation
Indices: 38487975--38488251 Score: 132
Period size: 29 Copynumber: 9.4 Consensus size: 30
38487965 CCCGAGGGTG
* *
38487975 AAATGGTAATTTTGGACA-TTTTAGGGT--A
1 AAAT-GTAATTTTTGAAAGTTTTAGGGTTAA
* *
38488003 AAATGGTAATTTTAGGAAAG-TTTAGGGTCAA
1 AAAT-GTAATTTT-TGAAAGTTTTAGGGTTAA
*
38488034 AAATAG-AATTTTTAGATA-TTTTAGGG-T-A
1 AAAT-GTAATTTTT-GAAAGTTTTAGGGTTAA
* *
38488062 AAATGGTAATTTTTAAAAGTTTTAAGGTTAA
1 AAAT-GTAATTTTTGAAAGTTTTAGGGTTAA
* * ** ** *
38488093 AAATGAAATTTAT-AAACATTCGGGGGT-A
1 AAATGTAATTTTTGAAAGTTTTAGGGTTAA
* *
38488121 AAATGGTATTTTTTGAAAGTTTTGGGGTTAA
1 AAAT-GTAATTTTTGAAAGTTTTAGGGTTAA
* *
38488152 AAATAG-AATTTTT-AGAAG-TTCAGGGCTAA
1 AAAT-GTAATTTTTGA-AAGTTTTAGGGTTAA
*** *
38488181 AAATGTAATTTTTGAAAAAATCAGGGTTAA
1 AAATGTAATTTTTGAAAGTTTTAGGGTTAA
* ** **
38488211 AAATGGAATTTTAAAAAGTTCGAGGG-TAA
1 AAATGTAATTTTTGAAAGTTTTAGGGTTAA
38488240 AAATGTAATTTT
1 AAATGTAATTTT
38488252 CGGAGAAATC
Statistics
Matches: 191, Mismatches: 41, Indels: 33
0.72 0.15 0.12
Matches are distributed among these distances:
28 27 0.14
29 76 0.40
30 71 0.37
31 17 0.09
ACGTcount: A:0.40, C:0.03, G:0.21, T:0.36
Consensus pattern (30 bp):
AAATGTAATTTTTGAAAGTTTTAGGGTTAA
Found at i:38488230 original size:59 final size:58
Alignment explanation
Indices: 38488145--38488343 Score: 233
Period size: 59 Copynumber: 3.4 Consensus size: 58
38488135 GAAAGTTTTG
* * * *
38488145 GGGTTAAAAATAGAATTTTTAGAAGTTCAGGGCTAAAAATGTAATTTTTGAAAAAATCA
1 GGGTTAAAAATAGAATTTTAAAAAGTTCAGGG-TAAAAATGTAATTTTTGGAGAAATCA
* *
38488204 GGGTTAAAAATGGAATTTTAAAAAGTTCGAGGGTAAAAATGTAATTTTCGGAGAAATCA
1 GGGTTAAAAATAGAATTTTAAAAAGTTC-AGGGTAAAAATGTAATTTTTGGAGAAATCA
* * * *
38488263 GAG-TAAAAATGGAATTTTGAAAAGTT-AGGGGTAAAAATTTAATTTTTGGAGAAATC-
1 GGGTTAAAAATAGAATTTTAAAAAGTTCA-GGGTAAAAATGTAATTTTTGGAGAAATCA
* *
38488319 GAGGTAAAAAATAAAATTTTAAAAA
1 G-GGTTAAAAATAGAATTTTAAAAA
38488344 AGTTTGGGTG
Statistics
Matches: 121, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
56 2 0.02
57 27 0.22
58 38 0.31
59 50 0.41
60 4 0.03
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.30
Consensus pattern (58 bp):
GGGTTAAAAATAGAATTTTAAAAAGTTCAGGGTAAAAATGTAATTTTTGGAGAAATCA
Found at i:38488268 original size:29 final size:28
Alignment explanation
Indices: 38488178--38488328 Score: 87
Period size: 29 Copynumber: 5.2 Consensus size: 28
38488168 AGTTCAGGGC
* * *
38488178 TAAAAATGTAATTTTTGAAAAAATCAGGG
1 TAAAAATGTAA-TTTTGGAGAAATCAGAG
* * *
38488207 TTAAAAATGGAATTTT--AAAAAGTTCGAGGG
1 -TAAAAATGTAATTTTGGAGAAA--TC-AGAG
38488237 TAAAAATGTAATTTTCGGAGAAATCAGAG
1 TAAAAATGTAATTTT-GGAGAAATCAGAG
* * *
38488266 TAAAAATGGAATTTT-GA-AAAGTTAGGGG
1 TAAAAATGTAATTTTGGAGAAA-TCA-GAG
*
38488294 TAAAAATTTAATTTTTGGAGAAATC-GAGG
1 TAAAAATGTAA-TTTTGGAGAAATCAGA-G
38488323 TAAAAA
1 TAAAAA
38488329 ATAAAATTTT
Statistics
Matches: 98, Mismatches: 11, Indels: 25
0.73 0.08 0.19
Matches are distributed among these distances:
26 3 0.03
27 9 0.09
28 12 0.12
29 48 0.49
30 19 0.19
31 3 0.03
32 4 0.04
ACGTcount: A:0.46, C:0.03, G:0.21, T:0.30
Consensus pattern (28 bp):
TAAAAATGTAATTTTGGAGAAATCAGAG
Found at i:38489565 original size:3 final size:3
Alignment explanation
Indices: 38489557--38489605 Score: 73
Period size: 3 Copynumber: 16.3 Consensus size: 3
38489547 TTCATTACTG
*
38489557 TTA TTA TTA ATA TTA TTA -TA TTCA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA
38489602 TTA T
1 TTA T
38489606 CATCATCATC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.88
4 3 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:38489580 original size:30 final size:30
Alignment explanation
Indices: 38489527--38489605 Score: 104
Period size: 30 Copynumber: 2.6 Consensus size: 30
38489517 TTTATTTATA
* * *
38489527 TATTATTTATTATTAATAAATTCATTACTGT
1 TATTA-TTATTATTATTATATTCATTACTAT
* *
38489558 TATTATTAATATTATTATATTCATTATTAT
1 TATTATTATTATTATTATATTCATTACTAT
38489588 TATTATTATTATTATTAT
1 TATTATTATTATTATTAT
38489606 CATCATCATC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 37 0.88
31 5 0.12
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.59
Consensus pattern (30 bp):
TATTATTATTATTATTATATTCATTACTAT
Found at i:38489583 original size:12 final size:11
Alignment explanation
Indices: 38489518--38489605 Score: 60
Period size: 12 Copynumber: 7.8 Consensus size: 11
38489508 TTCCATTTTT
38489518 TTAT-TTATATA
1 TTATATTAT-TA
38489529 TTAT-TTATTA
1 TTATATTATTA
*
38489539 TTA-ATAAATTCA
1 TTATAT-TATT-A
*
38489551 TTACTGTTATTA
1 TTA-TATTATTA
38489563 TTA-A-TATTA
1 TTATATTATTA
38489572 TTATATTCATTA
1 TTATATT-ATTA
38489584 TTATTATTATTA
1 TTA-TATTATTA
38489596 TTATTATTAT
1 TTA-TATTAT
38489606 CATCATCATC
Statistics
Matches: 64, Mismatches: 4, Indels: 17
0.75 0.05 0.20
Matches are distributed among these distances:
9 8 0.12
10 7 0.11
11 12 0.19
12 29 0.45
13 7 0.11
14 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (11 bp):
TTATATTATTA
Found at i:38490358 original size:35 final size:34
Alignment explanation
Indices: 38490311--38490435 Score: 142
Period size: 35 Copynumber: 3.6 Consensus size: 34
38490301 TTTTTGGACT
*
38490311 TTTAATATTTATAATAAATTTAAATTTAAATATAAA
1 TTTAA-ATTTAAAATAAATTTAAATTTAAA-ATAAA
* * * * *
38490347 TCTAAACTTATATTAAATTTAAATTTTAAAACAAA
1 TTTAAATTTAAAATAAATTTAAA-TTTAAAATAAA
* *
38490382 TTTAAATTTAAAATAAATTTAGATTCAAAATAAA
1 TTTAAATTTAAAATAAATTTAAATTTAAAATAAA
*
38490416 TTTCAATTTAAAATAAATTT
1 TTTAAATTTAAAATAAATTT
38490436 TAAAATGGGC
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
34 28 0.37
35 38 0.50
36 10 0.13
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (34 bp):
TTTAAATTTAAAATAAATTTAAATTTAAAATAAA
Found at i:38490376 original size:7 final size:6
Alignment explanation
Indices: 38490325--38490427 Score: 70
Period size: 6 Copynumber: 17.7 Consensus size: 6
38490315 ATATTTATAA
* * * *
38490325 TAAATT TAAATT TAAATA TAAATC TAAACT TATA-T TAAATT TAAATTT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAA-TT
* * * * * *
38490373 TAAA-A CAAATT TAAATT TAAA-A TAAATT TAGATT CAAA-A TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
*
38490418 TCAATT TAAA
1 TAAATT TAAA
38490428 ATAAATTTTA
Statistics
Matches: 72, Mismatches: 20, Indels: 10
0.71 0.20 0.10
Matches are distributed among these distances:
5 14 0.19
6 52 0.72
7 6 0.08
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (6 bp):
TAAATT
Found at i:38490393 original size:17 final size:17
Alignment explanation
Indices: 38490311--38490435 Score: 142
Period size: 17 Copynumber: 7.2 Consensus size: 17
38490301 TTTTTGGACT
*
38490311 TTTAATATTTATAATAAA
1 TTTAA-ATTTAAAATAAA
38490329 TTTAAATTTAAATATAAA
1 TTTAAATTTAAA-ATAAA
* * * *
38490347 TCTAAACTTATATTAAA
1 TTTAAATTTAAAATAAA
*
38490364 TTTAAATTTTAAAACAAA
1 TTTAAA-TTTAAAATAAA
38490382 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
* *
38490399 TTTAGATTCAAAATAAA
1 TTTAAATTTAAAATAAA
*
38490416 TTTCAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
38490433 TTT
1 TTT
38490436 TAAAATGGGC
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
17 57 0.64
18 32 0.36
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:38491134 original size:201 final size:201
Alignment explanation
Indices: 38490782--38491206 Score: 629
Period size: 201 Copynumber: 2.1 Consensus size: 201
38490772 ATTTGGTCTT
* * * * * *
38490782 CTTCTCAGTATCTCATCTGGAAGATGGCCGCGTCGCTTATTTCAATCCGTTTCTCTGTATCTCAT
1 CTTCTCTGTATCTCATCAGGAAGATGACCGCGTCACTTATTTCAATCCGCTTCTCTGTATCTCAC
** * * * **
38490847 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATTAGGAAGCTAACCATTTTATTGCTTTGA
66 CAAAAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCATTTTATTGATTCAA
*
38490912 CCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTC-AGAGATTTGCTCGCATTGAGCCTTGAGT
131 CCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGA-AGATTTGCTCACATTGAGCCTTGAGT
38490976 TAGTATA
195 TAGTATA
* * *
38490983 CTTCTCTGTATCTCATCAGGAAGATGACCGTC-TCACTTGTTTCAATTCGCTTCTCTGTATCTTA
1 CTTCTCTGTATCTCATCAGGAAGATGACCG-CGTCACTTATTTCAATCCGCTTCTCTGTATCTCA
*
38491047 CCAAAAAGACGAATTTGGTCCACTTCTTAGTATCTCATCAAGAAGCTAACCATTTTATTGATTCA
65 CCAAAAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCATTTTATTGATTCA
* *
38491112 ACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCCTTGAGT
130 ACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACATTGAGCCTTGAGT
*
38491177 TGGTATA
195 TAGTATA
38491184 CTTCTCTGTATCTCATCAGGAAG
1 CTTCTCTGTATCTCATCAGGAAG
38491207 CTGGGGTTCG
Statistics
Matches: 201, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
201 199 0.99
202 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (201 bp):
CTTCTCTGTATCTCATCAGGAAGATGACCGCGTCACTTATTTCAATCCGCTTCTCTGTATCTCAC
CAAAAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCATTTTATTGATTCAA
CCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACATTGAGCCTTGAGTT
AGTATA
Found at i:38491420 original size:232 final size:232
Alignment explanation
Indices: 38491007--38491438 Score: 720
Period size: 232 Copynumber: 1.9 Consensus size: 232
38490997 ATCAGGAAGA
* * * *
38491007 TGACCGTCTCACTTGTTTCAATTCGCTTCTCTGTATCTTACCAAAAAGACGAATTTGGTCCACTT
1 TGACCGCCTCACTTGTTCCAATTCGCTTCTCTGTATCTCACCAAAAAGACAAATTTGGTCCACTT
* *
38491072 CTTAGTATCTCATCAAGAAGCTAACCATTTTATTGATTCAACCTGCTTCTCAGTATCTCATCAGG
66 CTCAGTATCTCATCAAGAAGCTAACCATTTTATTGATTCAACCTGCTTCTCAGTATCTCATCAAG
*
38491137 AAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCCTTGAGTTGGTATACTTCTCTGTATCTCATCA
131 AAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCCTTGAGTTGGTATACTTCTCTATATCTCATCA
38491202 GGAAGCTGGGGTTCGAAGATTTGCTCACGTTGAGCCT
196 GGAAGCTGGGGTTCGAAGATTTGCTCACGTTGAGCCT
* ** *
38491239 TGACCGCCTCACTTGTTCCAATTTGCTTCTCTGTATCTCACCAGGAAGGCAAATTTGGTCCACTT
1 TGACCGCCTCACTTGTTCCAATTCGCTTCTCTGTATCTCACCAAAAAGACAAATTTGGTCCACTT
* * * *
38491304 CTCAGTATCTTATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAG
66 CTCAGTATCTCATCAAGAAGCTAACCATTTTATTGATTCAACCTGCTTCTCAGTATCTCATCAAG
*
38491369 AAGCTGGTGTTCGAAGATTTGCTCACTTTGAGCCTTGAGTTGGTATACTTCTCTATATCTCATCA
131 AAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCCTTGAGTTGGTATACTTCTCTATATCTCATCA
38491434 GGAAG
196 GGAAG
38491439 ATGACTGCCT
Statistics
Matches: 184, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
232 184 1.00
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.35
Consensus pattern (232 bp):
TGACCGCCTCACTTGTTCCAATTCGCTTCTCTGTATCTCACCAAAAAGACAAATTTGGTCCACTT
CTCAGTATCTCATCAAGAAGCTAACCATTTTATTGATTCAACCTGCTTCTCAGTATCTCATCAAG
AAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCCTTGAGTTGGTATACTTCTCTATATCTCATCA
GGAAGCTGGGGTTCGAAGATTTGCTCACGTTGAGCCT
Found at i:38491600 original size:39 final size:39
Alignment explanation
Indices: 38491557--38491739 Score: 123
Period size: 39 Copynumber: 4.7 Consensus size: 39
38491547 TCTGCTCCTC
*
38491557 GCTCGGGGTAAGAGATTGGTTGACGATGATCTACCCCAG
1 GCTCGGGGTAAGAGATTGGTTGACGATGATCTACCCCAA
* * *
38491596 GCTCGAGGTAAAAGATCAAATGGTT-AC-A--ATCTGCCCCAA
1 GCTCGGGGTAAGAGAT----TGGTTGACGATGATCTACCCCAA
* * * *
38491635 GCTCGGGGTAAGAGATTGGTTGATGATGATCT-GCCTAG
1 GCTCGGGGTAAGAGATTGGTTGACGATGATCTACCCCAA
* * *
38491673 GCTCGGGGTAAAAGATCAAATGGCTG-C-A--ACCTACCCCAA
1 GCTCGGGGTAAGAGAT----TGGTTGACGATGATCTACCCCAA
*
38491712 GCTCGGGGTAAGAGATTGGTTGATGATG
1 GCTCGGGGTAAGAGATTGGTTGACGATG
38491740 TAACTTCACT
Statistics
Matches: 107, Mismatches: 20, Indels: 34
0.66 0.12 0.21
Matches are distributed among these distances:
35 10 0.09
36 1 0.01
37 2 0.02
38 21 0.20
39 59 0.55
40 1 0.01
41 1 0.01
42 7 0.07
43 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (39 bp):
GCTCGGGGTAAGAGATTGGTTGACGATGATCTACCCCAA
Found at i:38491712 original size:77 final size:77
Alignment explanation
Indices: 38491483--38491739 Score: 334
Period size: 78 Copynumber: 3.3 Consensus size: 77
38491473 CCCGTGATCA
* ** * * *
38491483 GGGTAAGAAGATTGGTTGATGGTGATCTGCCCCAGGCTTAGGGTAAGAGATCGAATGGCTGTAAT
1 GGGTAAG-AGATTGGTTGATGATGATCTG-CCCAGGCTCGGGGTAAAAGATCAAATGGCTGCAAT
* **
38491548 CTGCTCCTCGCTCG
64 CTGCCCCAAGCTCG
* * * * *
38491562 GGGTAAGAGATTGGTTGACGATGATCTACCCCAGGCTCGAGGTAAAAGATCAAATGGTTACAATC
1 GGGTAAGAGATTGGTTGATGATGATCT-GCCCAGGCTCGGGGTAAAAGATCAAATGGCTGCAATC
38491627 TGCCCCAAGCTCG
65 TGCCCCAAGCTCG
* *
38491640 GGGTAAGAGATTGGTTGATGATGATCTGCCTAGGCTCGGGGTAAAAGATCAAATGGCTGCAACCT
1 GGGTAAGAGATTGGTTGATGATGATCTGCCCAGGCTCGGGGTAAAAGATCAAATGGCTGCAATCT
*
38491705 ACCCCAAGCTCG
66 GCCCCAAGCTCG
38491717 GGGTAAGAGATTGGTTGATGATG
1 GGGTAAGAGATTGGTTGATGATG
38491740 TAACTTCACT
Statistics
Matches: 155, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
77 66 0.43
78 82 0.53
79 7 0.05
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (77 bp):
GGGTAAGAGATTGGTTGATGATGATCTGCCCAGGCTCGGGGTAAAAGATCAAATGGCTGCAATCT
GCCCCAAGCTCG
Found at i:38491948 original size:101 final size:102
Alignment explanation
Indices: 38491829--38492186 Score: 578
Period size: 101 Copynumber: 3.5 Consensus size: 102
38491819 TGATGTCGAG
* *
38491829 GCTTCATCTTGCTCTTACTAAAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTATTTTTAATCCAACTT
* *
38491894 TACTACAGCTTCAAGAGGATAGGAATTGATATTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATATTTGAA
* *
38491931 GCTTCATC-TACTCTTACTACAACTTCAGAGAGATAAAGACTTGTTATTATTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTATTTTTAATCCAACTT
38491995 TACTGCAACTTCAAGAGGATAGGAATTGATATTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATATTTGAA
* * * * *
38492032 GTTTCATCTTGCTCTTATTACAACTTCAGAGAGATAAAGGCTTACTA-T-TGTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTATTTTTAATCCAACTT
* *
38492095 TACTGTAACTTCAAGAGGATAGGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATATTTGAA
38492132 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTATTTTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTATTTTT
38492187 TTATCTGATC
Statistics
Matches: 233, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
100 92 0.39
101 96 0.41
102 45 0.19
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.37
Consensus pattern (102 bp):
GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTATTTTTAATCCAACTT
TACTGCAACTTCAAGAGGATAGGAATTGATATTTGAA
Found at i:38492004 original size:50 final size:49
Alignment explanation
Indices: 38491843--38492111 Score: 154
Period size: 50 Copynumber: 5.4 Consensus size: 49
38491833 CATCTTGCTC
* * *
38491843 TTACTAAAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACT
1 TTACTACAACTTCA-AGAGATAAAGACTTGATATTATTTTTAATCCAACT
* * * *** * *
38491893 TTACTACAGCTTCAAGAGGAT-AGGAATTGATATTTGAAGCTTCAT-CTACT
1 TTACTACAACTTCAAGA-GATAAAGACTTGATA-TT-ATTTTTAATCCAACT
*
38491943 CTTACTACAACTTCAGAGAGATAAAGACTTGTTATTATTTTTAATCCAACT
1 -TTACTACAACTTCA-AGAGATAAAGACTTGATATTATTTTTAATCCAACT
* * * ** * ***
38491994 TTACTGCAACTTCAAGAGGAT-AGGAATTGATATTTGAAGTTTCATCTTGCT
1 TTACTACAACTTCAAGA-GATAAAGACTTGATA-TT-ATTTTTAATCCAACT
* * *
38492045 CTTATTACAACTTCAGAGAGATAAAGGCTT-ACTA-T-TGTTTAATCCAACT
1 -TTACTACAACTTCA-AGAGATAAAGACTTGA-TATTATTTTTAATCCAACT
**
38492094 TTACTGTAACTTCAAGAG
1 TTACTACAACTTCAAGAG
38492112 GATAGGAATT
Statistics
Matches: 162, Mismatches: 43, Indels: 31
0.69 0.18 0.13
Matches are distributed among these distances:
47 4 0.02
48 11 0.07
49 31 0.19
50 44 0.27
51 36 0.22
52 27 0.17
53 9 0.06
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (49 bp):
TTACTACAACTTCAAGAGATAAAGACTTGATATTATTTTTAATCCAACT
Found at i:38492114 original size:100 final size:100
Alignment explanation
Indices: 38491829--38492180 Score: 537
Period size: 100 Copynumber: 3.5 Consensus size: 100
38491819 TGATGTCGAG
* *
38491829 GCTTCATCTTGCTCTTACTAAAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTACTATTG--TTTAATCCAACTT
* *
38491894 TACTACAGCTTCAAGAGGATAGGAATTGATATTTGAA
64 TACTGCAACTTCAAGAGGATAGGAATTGATATTTGAA
* *
38491931 GCTTCATC-TACTCTTACTACAACTTCAGAGAGATAAAGACTTGTTATTATT-TTTAATCCAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGAC---TTACTATTGTTTAATCCAACT
38491994 TTACTGCAACTTCAAGAGGATAGGAATTGATATTTGAA
63 TTACTGCAACTTCAAGAGGATAGGAATTGATATTTGAA
* * *
38492032 GTTTCATCTTGCTCTTATTACAACTTCAGAGAGATAAAGGCTTACTATTGTTTAATCCAACTTTA
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTACTATTGTTTAATCCAACTTTA
* *
38492097 CTGTAACTTCAAGAGGATAGGAATTGATGTTTGAA
66 CTGCAACTTCAAGAGGATAGGAATTGATATTTGAA
*
38492132 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTACTATT
38492181 ATTTTTTTAT
Statistics
Matches: 228, Mismatches: 17, Indels: 12
0.89 0.07 0.05
Matches are distributed among these distances:
99 7 0.03
100 93 0.41
101 85 0.37
102 37 0.16
104 6 0.03
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (100 bp):
GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTACTATTGTTTAATCCAACTTTA
CTGCAACTTCAAGAGGATAGGAATTGATATTTGAA
Found at i:38492419 original size:50 final size:51
Alignment explanation
Indices: 38492308--38492789 Score: 315
Period size: 50 Copynumber: 9.8 Consensus size: 51
38492298 CAAATCTTAA
* * * * *
38492308 TGGTACTGGATCCGCCGTTAC-GGCTTAGATCTTTCCC-T-TGTGTCTTCG
1 TGGTACTGGATCTGCCGTTGCAGTCTTAGATCTTTCCCTTCTGTATCTTTG
*
38492356 TGGTACTGGATCTGCCGTTGCACTCTTAGAT-TTTCCCTTCTGTATCTTTG
1 TGGTACTGGATCTGCCGTTGCAGTCTTAGATCTTTCCCTTCTGTATCTTTG
* * * * *
38492406 TGGTACTAGATCTGCCGTCGC-GACTTTA-ATCTTTCCC-T-AGTGTCTTTG
1 TGGTACTGGATCTGCCGTTGCAGTC-TTAGATCTTTCCCTTCTGTATCTTTG
* * * ** * *
38492454 CGATACTGGATCCGCCGTTGTGGTCTTAGATCTTTTCCGTCGTGT-T-TTTG
1 TGGTACTGGATCTGCCGTTGCAGTCTTAGATCTTTCCCTTC-TGTATCTTTG
* * * *
38492504 TGGTACTGGATATGCCGTTGCGGTCTTAGATCTTTCCCTTCTATATCTTTA
1 TGGTACTGGATCTGCCGTTGCAGTCTTAGATCTTTCCCTTCTGTATCTTTG
* * * * **
38492555 TGGTATTGGATTTACCGTTGCAGTCTTAGATCTTTCCC-T-TGTGTCTTCA
1 TGGTACTGGATCTGCCGTTGCAGTCTTAGATCTTTCCCTTCTGTATCTTTG
** * * *
38492604 CAGTACTGGATCTGCCATTGC-GATCTTAAATCTTTCCCATCGTGT-T-TTTG
1 TGGTACTGGATCTGCCGTTGCAG-TCTTAGATCTTTCCCTTC-TGTATCTTTG
** * * * *
38492654 TGGTACTGGATCCACCGTCGC-GACTTAGATCTTTCCC-T-TGTGTCTTCG
1 TGGTACTGGATCTGCCGTTGCAGTCTTAGATCTTTCCCTTCTGTATCTTTG
* * * * *
38492702 CGGTACTGGATCCGCCGTTGC-GATCATAGATCTTTCTCGTCGTGT-T-TTTG
1 TGGTACTGGATCTGCCGTTGCAG-TCTTAGATCTTTCCCTTC-TGTATCTTTG
* * * * *
38492752 TGGTACTGGATCCGCCATCGC-GACTTAGATATTTCCCT
1 TGGTACTGGATCTGCCGTTGCAGTCTTAGATCTTTCCCT
38492790 GTCAAACCTG
Statistics
Matches: 342, Mismatches: 70, Indels: 43
0.75 0.15 0.09
Matches are distributed among these distances:
46 3 0.01
47 1 0.00
48 75 0.22
49 96 0.28
50 119 0.35
51 40 0.12
52 8 0.02
ACGTcount: A:0.14, C:0.24, G:0.22, T:0.40
Consensus pattern (51 bp):
TGGTACTGGATCTGCCGTTGCAGTCTTAGATCTTTCCCTTCTGTATCTTTG
Found at i:38492637 original size:150 final size:148
Alignment explanation
Indices: 38492311--38492692 Score: 405
Period size: 150 Copynumber: 2.6 Consensus size: 148
38492301 ATCTTAATGG
* * * * * * *
38492311 TACTGGATCCGCCGTTACG-GCTTAGATCTTTCCC-TTGTGTCTTCGTGGTACTGGATCTGCCGT
1 TACTGGATCCGCCATTGCGATCTTAAATCTTTCCCATCGTGTTTTTGTGGTACTGGATCTGCCGT
* * * *
38492374 TGCACTCTTAGAT-TTTCCCTTCTGTATCTTTGTGGTACTAGATCTGCCGTCGCGACTTTAATCT
66 TGC-GTCTTAGATCTTTCCCTTCTATATCTTTATGGTACTAGATCTACCGTCGCGACTTTAATCT
**
38492438 TTCCCTAGTGTCTTTGCGA
130 TTCCCTAGTGTCTTCACGA
* * * * * * *
38492457 TACTGGATCCGCCGTTGTGGTCTTAGATCTTTTCCGTCGTGTTTTTGTGGTACTGGATATGCCGT
1 TACTGGATCCGCCATTGCGATCTTAAATCTTTCCCATCGTGTTTTTGTGGTACTGGATCTGCCGT
* * * * *
38492522 TGCGGTCTTAGATCTTTCCCTTCTATATCTTTATGGTATTGGATTTACCGTTGC-AGTCTTAGAT
66 TGC-GTCTTAGATCTTTCCCTTCTATATCTTTATGGTACTAGATCTACCGTCGCGACT-TTA-AT
*
38492586 CTTTCCCTTGTGTCTTCAC-A
128 CTTTCCCTAGTGTCTTCACGA
* **
38492606 GTACTGGATCTGCCATTGCGATCTTAAATCTTTCCCATCGTGTTTTTGTGGTACTGGATCCACCG
1 -TACTGGATCCGCCATTGCGATCTTAAATCTTTCCCATCGTGTTTTTGTGGTACTGGATCTGCCG
* *
38492671 TCGCGACTTAGATCTTTCCCTT
65 TTGCGTCTTAGATCTTTCCCTT
38492693 GTGTCTTCGC
Statistics
Matches: 197, Mismatches: 33, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
146 17 0.09
147 13 0.07
148 38 0.19
149 54 0.27
150 75 0.38
ACGTcount: A:0.14, C:0.24, G:0.21, T:0.41
Consensus pattern (148 bp):
TACTGGATCCGCCATTGCGATCTTAAATCTTTCCCATCGTGTTTTTGTGGTACTGGATCTGCCGT
TGCGTCTTAGATCTTTCCCTTCTATATCTTTATGGTACTAGATCTACCGTCGCGACTTTAATCTT
TCCCTAGTGTCTTCACGA
Found at i:38492708 original size:98 final size:97
Alignment explanation
Indices: 38492309--38492789 Score: 407
Period size: 98 Copynumber: 4.9 Consensus size: 97
38492299 AAATCTTAAT
* * * * * * *
38492309 GGTACTGGATCCGCCGTTACG-GCTTAGATCTTTCCCTTGTGTCTTCGTGGTACTGGATCTGCCG
1 GGTACTGGATCTGCCGTTGCGATCTTAGATCTTTCCCTCGTGTTTTTGTGGTACTGGATCCGCCG
* * *
38492373 TTGC-ACTCTTAGAT-TTTCCCTTCTGTATCTTTGT
66 TTGCGA--CTTAGATCTTTCCC-T-TGTGTCTTCGC
* * * * * *
38492407 GGTACTAGATCTGCCGTCGCGA-CTTTA-ATCTTTCCCTAGTGTCTTTGCGATACTGGATCCGCC
1 GGTACTGGATCTGCCGTTGCGATC-TTAGATCTTTCCCTCGTGTTTTTGTGGTACTGGATCCGCC
* * * * * * *
38492470 GTTGTGGTCTTAGATCTTTTCCGTCGTGTTTTTGT
65 GTTG-CGACTTAGATC-TTTCCCTTGTGTCTTCGC
* * * * * ***
38492505 GGTACTGGATATGCCGTTGCGGTCTTAGATCTTTCCCTTC-TATATCTTTATGGTATTGGATTTA
1 GGTACTGGATCTGCCGTTGCGATCTTAGATCTTTCCC-TCGTGT-T-TTTGTGGTACTGGATCCG
* *
38492569 CCGTTGCAGTCTTAGATCTTTCCCTTGTGTCTTCAC
63 CCGTTGC-GACTTAGATCTTTCCCTTGTGTCTTCGC
* * * *
38492605 AGTACTGGATCTGCCATTGCGATCTTAAATCTTTCCCATCGTGTTTTTGTGGTACTGGATCCACC
1 GGTACTGGATCTGCCGTTGCGATCTTAGATCTTTCCC-TCGTGTTTTTGTGGTACTGGATCCGCC
*
38492670 GTCGCGACTTAGATCTTTCCCTTGTGTCTTCGC
65 GTTGCGACTTAGATCTTTCCCTTGTGTCTTCGC
* * *
38492703 GGTACTGGATCCGCCGTTGCGATCATAGATCTTTCTCGTCGTGTTTTTGTGGTACTGGATCCGCC
1 GGTACTGGATCTGCCGTTGCGATCTTAGATCTTTC-CCTCGTGTTTTTGTGGTACTGGATCCGCC
* * *
38492768 ATCGCGACTTAGATATTTCCCT
65 GTTGCGACTTAGATCTTTCCCT
38492790 GTCAAACCTG
Statistics
Matches: 310, Mismatches: 59, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
98 191 0.62
99 37 0.12
100 53 0.17
101 29 0.09
ACGTcount: A:0.14, C:0.25, G:0.22, T:0.40
Consensus pattern (97 bp):
GGTACTGGATCTGCCGTTGCGATCTTAGATCTTTCCCTCGTGTTTTTGTGGTACTGGATCCGCCG
TTGCGACTTAGATCTTTCCCTTGTGTCTTCGC
Found at i:38493522 original size:106 final size:106
Alignment explanation
Indices: 38493327--38493570 Score: 373
Period size: 106 Copynumber: 2.3 Consensus size: 106
38493317 CATGGTAGCA
* * *
38493327 AGGTGAATGAAATTTTATCGGAGGTAAAGCTCACATGAATGGAAAGATTAAAAGTGACCCATATT
1 AGGTGAATG-AATTTTATTGGAGGAAAAGCTCACATGAATGAAAAGATTAAAAGTGACCCATATT
38493392 GGTCGAAAGATGCCAAATATAAAGTAAGCAAAGAATAGAGTT
65 GGTCGAAAGATGCCAAATATAAAGTAAGCAAAGAATAGAGTT
* * **
38493434 AGGTGGATGAATTTTATTGGAGGAAAAGTTTGCATGAATGAAAAGATTAAAAGTGACCCATATTG
1 AGGTGAATGAATTTTATTGGAGGAAAAGCTCACATGAATGAAAAGATTAAAAGTGACCCATATTG
*
38493499 GTC-AAAGGATGCCAAATATAAAGTGAGCAAAGAATAGAGTT
66 GTCGAAA-GATGCCAAATATAAAGTAAGCAAAGAATAGAGTT
* *
38493540 AGGTGAATGAATTTTATTAGAGGCAAAGCTC
1 AGGTGAATGAATTTTATTGGAGGAAAAGCTC
38493571 GCATTAGTCC
Statistics
Matches: 123, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
105 3 0.02
106 112 0.91
107 8 0.07
ACGTcount: A:0.41, C:0.09, G:0.25, T:0.25
Consensus pattern (106 bp):
AGGTGAATGAATTTTATTGGAGGAAAAGCTCACATGAATGAAAAGATTAAAAGTGACCCATATTG
GTCGAAAGATGCCAAATATAAAGTAAGCAAAGAATAGAGTT
Found at i:38494121 original size:21 final size:21
Alignment explanation
Indices: 38494097--38494147 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
38494087 TTTTCTATGT
*
38494097 TTTTCTTCTTATTTTTCTTCC
1 TTTTCTTCTTATTTTACTTCC
* *
38494118 TTTTCTT-TTCTTTTACTTTC
1 TTTTCTTCTTATTTTACTTCC
*
38494138 TTTTTTTCTT
1 TTTTCTTCTT
38494148 TCTTCTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTCTTCTTATTTTACTTCC
Found at i:38494153 original size:15 final size:15
Alignment explanation
Indices: 38494098--38494163 Score: 62
Period size: 15 Copynumber: 4.2 Consensus size: 15
38494088 TTTCTATGTT
38494098 TTTCTTCTTATTTTTC
1 TTTCTTCTT-TTTTTC
* *
38494114 TTCCTT-TTCTTTTC
1 TTTCTTCTTTTTTTC
38494128 TTTTACTTTCTTTTTTTC
1 -TTT-C-TTCTTTTTTTC
*
38494146 TTTCTTCTTTTTTCC
1 TTTCTTCTTTTTTTC
38494161 TTT
1 TTT
38494164 GTTTATTGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 5 0.12
15 17 0.41
16 7 0.17
17 5 0.12
18 7 0.17
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTCTTCTTTTTTTC
Found at i:38499847 original size:28 final size:28
Alignment explanation
Indices: 38499816--38500030 Score: 96
Period size: 28 Copynumber: 7.4 Consensus size: 28
38499806 TTGGATACCC
*
38499816 GGGGGTAAAATGGTAATTTTGGATATTT
1 GGGGGTAAAATGGTAATTTTGGAAATTT
* * *
38499844 GGGGGCAAAATGGTATTTTTGGGAGAGTTT
1 GGGGGTAAAATGGTAATTTT-GGA-AATTT
*
38499874 -AGGGTCAAAAATGG-AATTTTTGGAAATTT
1 GGGGGT--AAAATGGTAA-TTTTGGAAATTT
* * **
38499903 AGGGGTAAAATGGTATTTTTTAAAAGTTT
1 GGGGGTAAAATGGTAATTTTGGAAA-TTT
** * * * *
38499932 TCGGTTCAAAAATGG-AATTTATAGACATTC
1 GGGGGT--AAAATGGTAATTT-TGGAAATTT
*
38499962 GGGGGTAAAATGGTAATATTTGAAAATTT
1 GGGGGTAAAATGGTAAT-TTTGGAAATTT
** * *
38499991 TTGGGTCAAAAATGG-AATTTTTGGAAGTTC
1 GGGGGT--AAAATGGTAA-TTTTGGAAATTT
*
38500021 GAGGGTAAAA
1 GGGGGTAAAA
38500031 ATATAATTTT
Statistics
Matches: 137, Mismatches: 34, Indels: 32
0.67 0.17 0.16
Matches are distributed among these distances:
28 43 0.31
29 29 0.21
30 36 0.26
31 29 0.21
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.35
Consensus pattern (28 bp):
GGGGGTAAAATGGTAATTTTGGAAATTT
Found at i:38499886 original size:31 final size:28
Alignment explanation
Indices: 38499817--38499922 Score: 115
Period size: 28 Copynumber: 3.7 Consensus size: 28
38499807 TGGATACCCG
* * *
38499817 GGGGTAAAATGGTAATTTTGGATATTTG
1 GGGGTAAAATGGTATTTTTGGAAATTTA
* *
38499845 GGGGCAAAATGGTATTTTTGGGAGAGTTTA
1 GGGGTAAAATGGTATTTTT-GGA-AATTTA
*
38499875 -GGGTCAAAAATGGAATTTTTGGAAATTTA
1 GGGGT--AAAATGGTATTTTTGGAAATTTA
38499904 GGGGTAAAATGGTATTTTT
1 GGGGTAAAATGGTATTTTT
38499923 TAAAAGTTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
28 30 0.47
29 11 0.17
30 10 0.16
31 13 0.20
ACGTcount: A:0.30, C:0.02, G:0.31, T:0.37
Consensus pattern (28 bp):
GGGGTAAAATGGTATTTTTGGAAATTTA
Found at i:38499895 original size:59 final size:58
Alignment explanation
Indices: 38499822--38500030 Score: 213
Period size: 59 Copynumber: 3.6 Consensus size: 58
38499812 ACCCGGGGGT
* * * *
38499822 AAAATGGTAA-TTTTGGATATTTGGGGGCAAAATGGTATTTTTGGGAGAGTTTAGGGTCA
1 AAAATGG-AATTTTTGGAAATTTGGGGGTAAAATGGTATTTTT-GAAAAGTTTAGGGTCA
* * * *
38499881 AAAATGGAATTTTTGGAAATTTAGGGGTAAAATGGTATTTTTTAAAAGTTTTCGGTTCA
1 AAAATGGAATTTTTGGAAATTTGGGGGTAAAATGGTATTTTTGAAAAG-TTTAGGGTCA
* * * * * * *
38499940 AAAATGGAATTTATAGACATTCGGGGGTAAAATGGTAATATTTGAAAATTTTTGGGTCA
1 AAAATGGAATTTTTGGAAATTTGGGGGTAAAATGGT-ATTTTTGAAAAGTTTAGGGTCA
* * *
38499999 AAAATGGAATTTTTGGAAGTTCGAGGGTAAAA
1 AAAATGGAATTTTTGGAAATTTGGGGGTAAAA
38500031 ATATAATTTT
Statistics
Matches: 124, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
58 5 0.04
59 110 0.89
60 9 0.07
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.35
Consensus pattern (58 bp):
AAAATGGAATTTTTGGAAATTTGGGGGTAAAATGGTATTTTTGAAAAGTTTAGGGTCA
Found at i:38500040 original size:29 final size:29
Alignment explanation
Indices: 38500006--38500103 Score: 108
Period size: 29 Copynumber: 3.3 Consensus size: 29
38499996 TCAAAAATGG
38500006 AATTTTTGGAAGTTCGAGGGTAAAAATAT
1 AATTTTTGGAAGTTCGAGGGTAAAAATAT
** * *
38500035 AATTTTTGGAAAAATCGAGGTTAAAAATAG
1 AATTTTTGG-AAGTTCGAGGGTAAAAATAT
* * *
38500065 AATTTTAT-AAAGTTCGGGGGTAAAAATGT
1 AATTTT-TGGAAGTTCGAGGGTAAAAATAT
38500094 AATTTTTGGA
1 AATTTTTGGA
38500104 GAAATTGAGA
Statistics
Matches: 54, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
28 1 0.02
29 30 0.56
30 22 0.41
31 1 0.02
ACGTcount: A:0.40, C:0.03, G:0.22, T:0.35
Consensus pattern (29 bp):
AATTTTTGGAAGTTCGAGGGTAAAAATAT
Found at i:38500060 original size:30 final size:30
Alignment explanation
Indices: 38500006--38500163 Score: 103
Period size: 30 Copynumber: 5.3 Consensus size: 30
38499996 TCAAAAATGG
**
38500006 AATTTTTGG-AAGTTCGAGGGTAAAAATAT
1 AATTTTTGGAAAAATCGAGGGTAAAAATAT
* *
38500035 AATTTTTGGAAAAATCGAGGTTAAAAATAG
1 AATTTTTGGAAAAATCGAGGGTAAAAATAT
** * *
38500065 AATTTTAT--AAAGTTCGGGGGTAAAAATGT
1 AATTTT-TGGAAAAATCGAGGGTAAAAATAT
* * * *
38500094 AATTTTTGGAGAAATTGA-GATCAAAAATAG
1 AATTTTTGGAAAAATCGAGGGT-AAAAATAT
* * *
38500124 AA-TTTT-GAAAAAGTTTGGGGGTCAAAATAT
1 AATTTTTGGAAAAA--TCGAGGGTAAAAATAT
38500154 AATTTTTGGA
1 AATTTTTGGA
38500164 TAGTTTAGGG
Statistics
Matches: 96, Mismatches: 23, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
28 6 0.06
29 36 0.38
30 45 0.47
31 7 0.07
32 2 0.02
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.34
Consensus pattern (30 bp):
AATTTTTGGAAAAATCGAGGGTAAAAATAT
Found at i:38500160 original size:60 final size:59
Alignment explanation
Indices: 38499996--38500163 Score: 210
Period size: 59 Copynumber: 2.8 Consensus size: 59
38499986 AATTTTTGGG
* *** * *
38499996 TCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATATAATTTTTGGAAAAATCGAGG
1 TCAAAAATAGAATTTTAAAAAGTTCGGGGGTAAAAATATAATTTTTGGAAAAATCGAGA
* * * * *
38500055 TTAAAAATAGAATTTTATAAAGTTCGGGGGTAAAAATGTAATTTTTGGAGAAATTGAGA
1 TCAAAAATAGAATTTTAAAAAGTTCGGGGGTAAAAATATAATTTTTGGAAAAATCGAGA
* *
38500114 TCAAAAATAGAATTTTGAAAAAGTTTGGGGGTCAAAATATAATTTTTGGA
1 TCAAAAATAGAATTTT-AAAAAGTTCGGGGGTAAAAATATAATTTTTGGA
38500164 TAGTTTAGGG
Statistics
Matches: 93, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
59 64 0.69
60 29 0.31
ACGTcount: A:0.42, C:0.04, G:0.22, T:0.33
Consensus pattern (59 bp):
TCAAAAATAGAATTTTAAAAAGTTCGGGGGTAAAAATATAATTTTTGGAAAAATCGAGA
Found at i:38501292 original size:3 final size:3
Alignment explanation
Indices: 38501286--38501327 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
38501276 TTCATTACTG
*
38501286 TTA TTA TTA ATA TTA TTA -TA TTCA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA
38501328 ATGTTAATGT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:38502093 original size:7 final size:6
Alignment explanation
Indices: 38502042--38502144 Score: 61
Period size: 6 Copynumber: 17.7 Consensus size: 6
38502032 ATATTTATAA
* * * * *
38502042 TAAATT TAAATT TAAATA TAAATC TAAACT CATA-T TAAATT TAAATTT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAA-TT
* * * * * *
38502090 TAAA-A CAAATT TAAATT TAAA-A TAAATT TAGATT CAAA-A TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
*
38502135 TCAATT TAAA
1 TAAATT TAAA
38502145 ATAGATTTCA
Statistics
Matches: 70, Mismatches: 22, Indels: 10
0.69 0.22 0.10
Matches are distributed among these distances:
5 13 0.19
6 51 0.73
7 6 0.09
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (6 bp):
TAAATT
Found at i:38502110 original size:17 final size:17
Alignment explanation
Indices: 38502028--38502152 Score: 124
Period size: 17 Copynumber: 7.2 Consensus size: 17
38502018 TTTTTGGACT
*
38502028 TTTAATATTTATAATAAA
1 TTTAA-ATTTAAAATAAA
38502046 TTTAAATTTAAATATAAA
1 TTTAAATTTAAA-ATAAA
* * * * *
38502064 TCTAAACTCATATTAAA
1 TTTAAATTTAAAATAAA
*
38502081 TTTAAATTTTAAAACAAA
1 TTTAAA-TTTAAAATAAA
38502099 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
* *
38502116 TTTAGATTCAAAATAAA
1 TTTAAATTTAAAATAAA
* *
38502133 TTTCAATTTAAAATAGA
1 TTTAAATTTAAAATAAA
38502150 TTT
1 TTT
38502153 CAAAATGGGC
Statistics
Matches: 86, Mismatches: 19, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
17 56 0.65
18 30 0.35
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:38502116 original size:35 final size:34
Alignment explanation
Indices: 38502028--38502152 Score: 124
Period size: 35 Copynumber: 3.6 Consensus size: 34
38502018 TTTTTGGACT
*
38502028 TTTAATATTTATAATAAATTTAAATTTAAATATAAA
1 TTTAA-ATTTAAAATAAATTTAAATTTAAA-ATAAA
* * * * * *
38502064 TCTAAACTCATATTAAATTTAAATTTTAAAACAAA
1 TTTAAATTTAAAATAAATTTAAA-TTTAAAATAAA
* *
38502099 TTTAAATTTAAAATAAATTTAGATTCAAAATAAA
1 TTTAAATTTAAAATAAATTTAAATTTAAAATAAA
* *
38502133 TTTCAATTTAAAATAGATTT
1 TTTAAATTTAAAATAAATTT
38502153 CAAAATGGGC
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
34 27 0.37
35 36 0.49
36 10 0.14
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (34 bp):
TTTAAATTTAAAATAAATTTAAATTTAAAATAAA
Found at i:38503469 original size:40 final size:40
Alignment explanation
Indices: 38503414--38503495 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
38503404 TCAACCAGTA
*
38503414 AGATAATCTACAAAACAATAACATCTTTGGTAAGCTTCAT
1 AGATAATCTACAAAACAACAACATCTTTGGTAAGCTTCAT
38503454 AGATAATCTACAAAACAACAACATCTTTGGTAAGCTTCAT
1 AGATAATCTACAAAACAACAACATCTTTGGTAAGCTTCAT
38503494 AG
1 AG
38503496 CTTAGTAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (40 bp):
AGATAATCTACAAAACAACAACATCTTTGGTAAGCTTCAT
Found at i:38507108 original size:17 final size:19
Alignment explanation
Indices: 38507069--38507107 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
38507059 TCTTATGCGG
38507069 TTGAATTTTATTACTAAATT
1 TTGAATTTTATTAC-AAATT
38507089 TTGAATTTTATTA-AAATT
1 TTGAATTTTATTACAAATT
38507107 T
1 T
38507108 GCCACCAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
20 13 0.68
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (19 bp):
TTGAATTTTATTACAAATT
Found at i:38512181 original size:6 final size:6
Alignment explanation
Indices: 38512170--38512201 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
38512160 CTTATCTATG
38512170 GGAAAT GGAAAT GGAAAT GGAAAT GGAAAT GG
1 GGAAAT GGAAAT GGAAAT GGAAAT GGAAAT GG
38512202 GCCAAGGCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.38, T:0.16
Consensus pattern (6 bp):
GGAAAT
Found at i:38514023 original size:18 final size:17
Alignment explanation
Indices: 38514000--38514047 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
38513990 CATTCAATTT
38514000 ATAATAAAAAATGACAAA
1 ATAATAAAAAAT-ACAAA
* *
38514018 ATAATAAACAATATAAA
1 ATAATAAAAAATACAAA
38514035 A-AATAAATAAATA
1 ATAATAAA-AAATA
38514048 AATGCAAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 6 0.23
17 9 0.35
18 11 0.42
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (17 bp):
ATAATAAAAAATACAAA
Found at i:38514204 original size:30 final size:29
Alignment explanation
Indices: 38514162--38514256 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 29
38514152 AAAACGTAAT
38514162 TTTAAAAGAAATAAAAATAAAATGGTTAAA
1 TTTAAAA-AAATAAAAATAAAATGGTTAAA
*
38514192 TTTAACAAAAATAAAAATAAAA-GGATTTAA
1 TTTAA-AAAAATAAAAATAAAATGG-TTAAA
* * *
38514222 TTTTAAAAAA-CAAAAT-AAATGGGTAAAA
1 TTTAAAAAAATAAAAATAAAAT-GGTTAAA
38514250 TTTAAAA
1 TTTAAAA
38514257 GGGAAAATAA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
27 3 0.05
28 14 0.25
29 9 0.16
30 27 0.49
31 2 0.04
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (29 bp):
TTTAAAAAAATAAAAATAAAATGGTTAAA
Found at i:38526116 original size:19 final size:20
Alignment explanation
Indices: 38526092--38526142 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
38526082 TTCAATTTAC
38526092 AATAAA-AAATGACAAAAAT-
1 AATAAACAAATGA-AAAAATG
38526111 AATAAACAATAT-AAAAAATG
1 AATAAACAA-ATGAAAAAATG
*
38526131 AATAAATAAATG
1 AATAAACAAATG
38526143 TAAATCGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
19 14 0.52
20 11 0.41
21 2 0.07
ACGTcount: A:0.71, C:0.04, G:0.06, T:0.20
Consensus pattern (20 bp):
AATAAACAAATGAAAAAATG
Found at i:38526272 original size:29 final size:31
Alignment explanation
Indices: 38526240--38526304 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
38526230 ATAAAAACAG
*
38526240 AATAAAAGGG-T-AATTTTAA-AAGAAATATA
1 AATAAAAGGGTTAAATTTTAACAA-AAATAAA
38526269 AATAAAAGGGTTAAATTTTAACAAAAATAAA
1 AATAAAAGGGTTAAATTTTAACAAAAATAAA
38526300 AATAA
1 AATAA
38526305 TTTAATTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 10 0.31
30 1 0.03
31 19 0.59
32 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.11, T:0.26
Consensus pattern (31 bp):
AATAAAAGGGTTAAATTTTAACAAAAATAAA
Found at i:38530895 original size:21 final size:21
Alignment explanation
Indices: 38530857--38530896 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
38530847 TACCCTTTAC
* *
38530857 TTCTACCGGTACATGTATGAG
1 TTCTACCGGAACAAGTATGAG
*
38530878 TTCTATCGGAACAAGTATG
1 TTCTACCGGAACAAGTATG
38530897 TAGAATCTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (21 bp):
TTCTACCGGAACAAGTATGAG
Found at i:38531705 original size:23 final size:23
Alignment explanation
Indices: 38531632--38531805 Score: 140
Period size: 23 Copynumber: 7.5 Consensus size: 23
38531622 TATACGGAAC
* *
38531632 AAACAGAGAGTAC-CAAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
*
38531654 -AACAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
38531675 GGGCAACAGAGAGCACACACAGTGCT
1 ---AAACAGAGAGCACACAAAGTGCT
* *
38531701 AAACAGAGAGTACACAAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
*
38531724 AATCAGAGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* * *
38531747 AATCAGAGAGCACACACAGTGTT
1 AAACAGAGAGCACACAAAGTGCT
* * *
38531770 AATAACAGATAGCACGA-GACGTGCT
1 -A-AACAGAGAGCAC-ACAAAGTGCT
38531795 AAACAGAGAGC
1 AAACAGAGAGC
38531806 GCGCTAGAGT
Statistics
Matches: 122, Mismatches: 21, Indels: 17
0.76 0.13 0.11
Matches are distributed among these distances:
21 17 0.14
23 69 0.57
24 2 0.02
25 27 0.22
26 7 0.06
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.13
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:38531754 original size:69 final size:66
Alignment explanation
Indices: 38531632--38531767 Score: 193
Period size: 69 Copynumber: 2.0 Consensus size: 66
38531622 TATACGGAAC
*
38531632 AAACAGAGAGTACCAAAGTACTAACAGAGAGCACATAAGTGCTGGGCAACAGAGAGCACACACAG
1 AAACAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCT--G-AACAGAGAGCACACACAG
38531697 TGCT
63 TGCT
38531701 AAACAGAGAGTACACAAAGTACTAATCAGAGAGCACACAAAGTGCT-AATCAGAGAGCACACACA
1 AAACAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACA-AAAGTGCTGAA-CAGAGAGCACACACA
38531765 GTG
62 GTG
38531768 TTAATAACAG
Statistics
Matches: 62, Mismatches: 1, Indels: 8
0.87 0.01 0.11
Matches are distributed among these distances:
68 2 0.03
69 31 0.50
70 11 0.18
71 11 0.18
72 7 0.11
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (66 bp):
AAACAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCTGAACAGAGAGCACACACAGTGC
T
Found at i:38547223 original size:50 final size:49
Alignment explanation
Indices: 38547136--38547321 Score: 149
Period size: 50 Copynumber: 3.7 Consensus size: 49
38547126 CAAGACAACG
** ** * * *
38547136 AATCTTATACCTCTAAAGCCATAGAGGAACAGATTGAAGTCGCAATGACA
1 AATCTTATACC-CTAAAGCTGTAGAGGGGCAGATTGAAGCCACAAGGACA
* * * *
38547186 AATCTTATACACCTAAAGCTGTAGAGGGGCAGGTTGAAGCCATAAGGGCG
1 AATCTTATAC-CCTAAAGCTGTAGAGGGGCAGATTGAAGCCACAAGGACA
* * * * *
38547236 AATCTCATACCCCTAAAGTTGTAGAGGGGCAGATTGAAACTAC-AGAAGCA
1 AATCTTATA-CCCTAAAGCTGTAGAGGGGCAGATTGAAGCCACAAGGA-CA
* *
38547286 AATCCTATACCCCCTAAAGTTGTAGAGGGGCAGATT
1 AATCTTATA--CCCTAAAGCTGTAGAGGGGCAGATT
38547322 AAAATGAGTA
Statistics
Matches: 110, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
49 2 0.02
50 80 0.73
51 28 0.25
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (49 bp):
AATCTTATACCCTAAAGCTGTAGAGGGGCAGATTGAAGCCACAAGGACA
Found at i:38547662 original size:90 final size:90
Alignment explanation
Indices: 38547504--38547672 Score: 214
Period size: 90 Copynumber: 1.9 Consensus size: 90
38547494 ATATCCTTGG
* * *
38547504 AGTTACAGTGGATCGGATTAAAGATACGAAAGCGAATCCTTATCTCTATGAAGTTACAGTATAGC
1 AGTTACAGTGGATCGGATTAAAGATACGAAAGCAAATCCTTATCTCTATAAAGTTACAGTAGAGC
*
38547569 AAGATGAAGCTACCTATACCCCTGA
66 AAGATAAAGCTACCTATACCCCTGA
* * * * * * * *
38547594 AGTTGCAGTGGGTCGGATTAAAG-TCATGAAAGCAAATCTTTATCTTTCTAAAGTTGCAGTGGAG
1 AGTTACAGTGGATCGGATTAAAGAT-ACGAAAGCAAATCCTTATCTCTATAAAGTTACAGTAGAG
38547658 CAAGATAAAGCTACC
65 CAAGATAAAGCTACC
38547673 ACACCAAATC
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
89 1 0.02
90 65 0.98
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (90 bp):
AGTTACAGTGGATCGGATTAAAGATACGAAAGCAAATCCTTATCTCTATAAAGTTACAGTAGAGC
AAGATAAAGCTACCTATACCCCTGA
Found at i:38547756 original size:101 final size:101
Alignment explanation
Indices: 38547581--38547770 Score: 265
Period size: 101 Copynumber: 1.9 Consensus size: 101
38547571 GATGAAGCTA
* * ** * *
38547581 CCTATACCCCTGAAGTTGCAGTGGGTCGGATTAAAGTCATGAAAGCAAATCTTTATCTTTCTAAA
1 CCTATACCACTAAAGTTGCAGTGGGTCAAATTAAAGACATGAAAGCAAATCTTTATCTCTCTAAA
38547646 GTTGCAGTGGAGCAAGATAAAGCTACCACACCAAAT
66 GTTGCAGTGGAGCAAGATAAAGCTACCACACCAAAT
* * *
38547682 CCTATACCACTAAAGTTGTAGTGGGTCAAATTAAAGACATGAAAGGAAATCTTTATCTC-CTTGA
1 CCTATACCACTAAAGTTGCAGTGGGTCAAATTAAAGACATGAAAGCAAATCTTTATCTCTC-TAA
* *
38547746 ATTTGCAGTGGAGCAAGATGAAGCT
65 AGTTGCAGTGGAGCAAGATAAAGCT
38547771 GCAATACTAG
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
100 1 0.01
101 76 0.99
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (101 bp):
CCTATACCACTAAAGTTGCAGTGGGTCAAATTAAAGACATGAAAGCAAATCTTTATCTCTCTAAA
GTTGCAGTGGAGCAAGATAAAGCTACCACACCAAAT
Found at i:38547785 original size:101 final size:100
Alignment explanation
Indices: 38547581--38547805 Score: 256
Period size: 101 Copynumber: 2.2 Consensus size: 100
38547571 GATGAAGCTA
* * ** * *
38547581 CCTATACCCCTGAAGTTGCAGTGGGTCGGATTAAAGTCATGAAAGCAAATCTTTATCTTTCTAAA
1 CCTATA-CCCTAAAGTTGTAGTGGGTCAAATTAAAGACATGAAAGCAAATCTTTATCTCTCTAAA
*
38547646 GTTGCAGTGGAGCAAGATAAAGCTACCACACCAAAT
65 GTTGCAGTGGAGCAAGATAAAGCTACAACACCAAAT
* *
38547682 CCTATACCACTAAAGTTGTAGTGGGTCAAATTAAAGACATGAAAGGAAATCTTTATCTC-CTTGA
1 CCTATACC-CTAAAGTTGTAGTGGGTCAAATTAAAGACATGAAAGCAAATCTTTATCTCTC-TAA
* * * * * *
38547746 ATTTGCAGTGGAGCAAGATGAAGCTGCAATACTAGAT
64 AGTTGCAGTGGAGCAAGATAAAGCTACAACACCAAAT
38547783 CCTAT-CTTCCTAAAGTTGTAGTG
1 CCTATAC--CCTAAAGTTGTAGTG
38547806 AAGCAGATAC
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
100 4 0.04
101 100 0.95
102 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (100 bp):
CCTATACCCTAAAGTTGTAGTGGGTCAAATTAAAGACATGAAAGCAAATCTTTATCTCTCTAAAG
TTGCAGTGGAGCAAGATAAAGCTACAACACCAAAT
Found at i:38548053 original size:9 final size:9
Alignment explanation
Indices: 38548031--38548071 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
38548021 TTATTATTTT
38548031 ATAAATATAA
1 ATAAATA-AA
38548041 ATAAATAAA
1 ATAAATAAA
38548050 ATAAAT-AA
1 ATAAATAAA
*
38548058 AT-AATAGA
1 ATAAATAAA
38548066 ATAAAT
1 ATAAAT
38548072 GCTTTAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
7 3 0.11
8 7 0.25
9 11 0.39
10 7 0.25
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (9 bp):
ATAAATAAA
Found at i:38548055 original size:13 final size:14
Alignment explanation
Indices: 38548031--38548061 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
38548021 TTATTATTTT
38548031 ATAAATATAAATAA
1 ATAAATATAAATAA
38548045 ATAAA-ATAAATAA
1 ATAAATATAAATAA
38548058 ATAA
1 ATAA
38548062 TAGAATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
ATAAATATAAATAA
Found at i:38548113 original size:21 final size:22
Alignment explanation
Indices: 38548087--38548133 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
38548077 AAAATAAAGT
*
38548087 CCAATACCCAAAATA-CAAAAC
1 CCAATACACAAAATACCAAAAC
* *
38548108 CCAATACATAAAATACCCAAAC
1 CCAATACACAAAATACCAAAAC
38548130 CCAA
1 CCAA
38548134 AAAATCATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.55, C:0.34, G:0.00, T:0.11
Consensus pattern (22 bp):
CCAATACACAAAATACCAAAAC
Found at i:38548864 original size:9 final size:10
Alignment explanation
Indices: 38548834--38548862 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
38548824 GGAGCCGAAA
38548834 GGATTTTTTT
1 GGATTTTTTT
38548844 GGATTTTTTT
1 GGATTTTTTT
38548854 GGATTTTTT
1 GGATTTTTT
38548863 GGCCACCGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.00, G:0.21, T:0.69
Consensus pattern (10 bp):
GGATTTTTTT
Found at i:38550356 original size:13 final size:13
Alignment explanation
Indices: 38550340--38550371 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
38550330 TAAATTAAAA
38550340 AAATAAAAATATC
1 AAATAAAAATATC
38550353 AAATAAAAATATC
1 AAATAAAAATATC
38550366 AAATAA
1 AAATAA
38550372 TATAACTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (13 bp):
AAATAAAAATATC
Found at i:38551472 original size:25 final size:26
Alignment explanation
Indices: 38551443--38551501 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
38551433 TCTAAATTTG
* *
38551443 AAATTTAATCTGTTTTTAA-TTT-AAA
1 AAATTTAATCT-TATTCAATTTTAAAA
38551468 AAATTTAATCTTATTCAATTTTAAAA
1 AAATTTAATCTTATTCAATTTTAAAA
38551494 AAATTTAA
1 AAATTTAA
38551502 AATCTAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 5 0.17
25 14 0.47
26 11 0.37
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (26 bp):
AAATTTAATCTTATTCAATTTTAAAA
Found at i:38555769 original size:14 final size:14
Alignment explanation
Indices: 38555740--38555779 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
38555730 AAACTGACAA
38555740 AATTATATTAAATTT
1 AATTA-ATTAAATTT
*
38555755 AATTAATTAACTTT
1 AATTAATTAAATTT
*
38555769 AATTCATTAAA
1 AATTAATTAAA
38555780 AAATTCCTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (14 bp):
AATTAATTAAATTT
Found at i:38557692 original size:11 final size:12
Alignment explanation
Indices: 38557676--38557729 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 12
38557666 TTTTTTAAAG
38557676 TTTAAA-TTAAT
1 TTTAAATTTAAT
38557687 TTTAAATTT-A-
1 TTTAAATTTAAT
*
38557697 TTTAAATTTACTT
1 TTTAAATTTA-AT
38557710 ATTTAAATTTAAT
1 -TTTAAATTTAAT
*
38557723 TTAAAAT
1 TTTAAAT
38557730 AATATTAAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
10 9 0.26
11 7 0.20
12 8 0.23
13 1 0.03
14 10 0.29
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (12 bp):
TTTAAATTTAAT
Found at i:38557702 original size:10 final size:11
Alignment explanation
Indices: 38557676--38557727 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
38557666 TTTTTTAAAG
*
38557676 TTTAAATTAAT
1 TTTAAATTTAT
38557687 TTTAAATTTA-
1 TTTAAATTTAT
38557697 TTTAAATTTACTT
1 TTTAAATTTA--T
*
38557710 ATTTAAATTTAA
1 -TTTAAATTTAT
38557722 TTTAAA
1 TTTAAA
38557728 ATAATATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
10 10 0.29
11 15 0.43
14 10 0.29
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (11 bp):
TTTAAATTTAT
Found at i:38557713 original size:14 final size:14
Alignment explanation
Indices: 38557694--38557720 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
38557684 AATTTTAAAT
38557694 TTATTTAAATTTAC
1 TTATTTAAATTTAC
38557708 TTATTTAAATTTA
1 TTATTTAAATTTA
38557721 ATTTAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTTAAATTTAC
Found at i:38559479 original size:160 final size:159
Alignment explanation
Indices: 38559295--38559600 Score: 391
Period size: 160 Copynumber: 1.9 Consensus size: 159
38559285 TTTTAATTGG
* * **
38559295 TTTTTAATTTAATCCTTCGACTGTTTGATTGCAACAGAGGCTACCACGTGTCTTTTTTTGGGCTT
1 TTTTTAAATTAATCCTTCGACTG-TTGACTGCAACAGAGGCTACCACGTGTC-ACTTTT-GGCTT
* *
38559360 AGTT-TGCATTTAGTCCCTGT-TGTGTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTGCTT
63 AGTTATGCATCTAGTCCCTGTATGTGTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTACTT
38559423 AATTACAAAATTGACCCAGGAATCTTTTGAGA
128 AATTACAAAATTGACCCAGGAATCTTTTGAGA
* * * * * *
38559455 TTTTTAAATTAGTCCTTTGACTGTTGACTGCACCAGAGGCTGCCACGTGTCACTTTTGGTTTATT
1 TTTTTAAATTAATCCTTCGACTGTTGACTGCAACAGAGGCTACCACGTGTCACTTTTGGCTTAGT
* * * * * *
38559520 TATGTATCTAGTCCCTGTCATTTTTAATTTGTTTTAATTTAATCCTTAAATCAACTTTTATTTTA
66 TATGCATCTAGTCCCTGT-ATGTGTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTACTTAA
*
38559585 TTACAAAATTGGCCCA
130 TTACAAAATTGACCCA
38559601 ACAATTTTTC
Statistics
Matches: 124, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
157 7 0.06
158 18 0.15
159 25 0.20
160 74 0.60
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.44
Consensus pattern (159 bp):
TTTTTAAATTAATCCTTCGACTGTTGACTGCAACAGAGGCTACCACGTGTCACTTTTGGCTTAGT
TATGCATCTAGTCCCTGTATGTGTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTACTTAAT
TACAAAATTGACCCAGGAATCTTTTGAGA
Found at i:38559830 original size:58 final size:59
Alignment explanation
Indices: 38559707--38560312 Score: 743
Period size: 58 Copynumber: 10.4 Consensus size: 59
38559697 CCTGGATGGT
* **
38559707 CCAAAAATTACCATTTTACCTAC-AAACTTTCCAAAATTCTGTTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACC-CCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* *
38559766 CCAAAAATTACCATTTTACCCCTAAACTTTCC-AAATTCCATTTTCAACCCCGGTTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * *
38559824 TCAAAAATTACTATTTTACCCCTAAAC-TTCCAAAATTCCATTTTTAACCCCAATTTTA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
**
38559882 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCA-TTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* *
38559940 CCAAAAATTACCATTTTACCCTTAAAC-TTCCAAAATTCCATTTTTAACCTC-AGTTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGA-TTTCA
* * *
38559998 CAAAAAATTACCATTTTA-CCCTCGAAC-TTCTCAAAATTCCATTTTTAACCCC-ATTTTTA
1 CCAAAAATTACCATTTTACCCCT-AAACTTTC-CAAAATTCCATTTTTAACCCCGA-TTTCA
* * * *
38560057 CCAAAAATCACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTCAACCCCAATTTAA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* *
38560116 CCAAAAATTACTATTTTA-CCCTCAAATTTTCCAAAATTCCA-TTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCT-AAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * * ** **
38560174 CCTAAAATTACCATCTTACCCATAAACTTTCCAAAATTCTATTTTCGACCTAGATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
38560233 CCAAAAATTACTATTTTA-CCCTCAAATTTTCCAAAATTCCATTTTTAACCCTGATTTCA
1 CCAAAAATTACCATTTTACCCCT-AAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* *
38560292 TC-AAAATTACCATTTTGCCCC
1 CCAAAAATTACCATTTTACCCC
38560313 CACGAGTCCA
Statistics
Matches: 471, Mismatches: 61, Indels: 30
0.84 0.11 0.05
Matches are distributed among these distances:
57 21 0.04
58 234 0.50
59 208 0.44
60 8 0.02
ACGTcount: A:0.34, C:0.29, G:0.02, T:0.35
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:38560013 original size:31 final size:29
Alignment explanation
Indices: 38559855--38560307 Score: 137
Period size: 30 Copynumber: 15.4 Consensus size: 29
38559845 CTAAACTTCC
* *
38559855 AAAATTCCATTTTTAACCCCAATTTTACCA
1 AAAATTCCATTTTTAACCTCAATTTCA-CA
* *
38559885 AAAATTACCA-TTTTACCCCCGAACTTTC-C-
1 AAAATT-CCATTTTTAACCTC-AA-TTTCACA
* *
38559914 AAAATTCCA-TTTTAACCCCGATTTCACCA
1 AAAATTCCATTTTTAACCTCAATTTCA-CA
* * *
38559943 AAAATTACCA-TTTTACCCTTAAACTTC-C-
1 AAAATT-CCATTTTTAACC-TCAATTTCACA
*
38559971 AAAATTCCATTTTTAACCTCAGTTTCACAA
1 AAAATTCCATTTTTAACCTCAATTTCAC-A
* * *
38560001 AAAATTACCA-TTTTACCCTCGAACTTCTC-
1 AAAATT-CCATTTTTAACCTC-AATTTCACA
* * *
38560030 AAAATTCCATTTTTAACCCCATTTTTACCA
1 AAAATTCCATTTTTAACCTCAATTTCA-CA
* * *
38560060 AAAATCACCA-TTTTACCCCTAAACTTTC-C-
1 AAAAT-TCCATTTTTA-ACCTCAA-TTTCACA
* * *
38560089 AAAATTCCATTTTCAACCCCAATTTAACCA
1 AAAATTCCATTTTTAACCTCAATTTCA-CA
* *
38560119 AAAATTAC-TATTTTACCCTCAAATTTTC-C-
1 AAAATTCCAT-TTTTAACCTC-AA-TTTCACA
* * *
38560148 AAAATTCCA-TTTTAACCCCGATTTCACCT
1 AAAATTCCATTTTTAACCTCAATTTCA-CA
* * *
38560177 AAAATTACCA-TCTTACCCATAAACTTTC-C-
1 AAAATT-CCATTTTTAACC-TCAA-TTTCACA
* **
38560206 AAAATTCTATTTTCGACCT-AGATTTCACCA
1 AAAATTCCATTTTTAACCTCA-ATTTCA-CA
* *
38560236 AAAATTAC-TATTTTACCCTCAAATTTTC-C-
1 AAAATTCCAT-TTTTAACCTC-AA-TTTCACA
*
38560265 AAAATTCCATTTTTAACC-CTGATTTCATC-
1 AAAATTCCATTTTTAACCTC-AATTTCA-CA
38560294 AAAATTACCATTTT
1 AAAATT-CCATTTT
38560308 GCCCCCACGA
Statistics
Matches: 313, Mismatches: 63, Indels: 94
0.67 0.13 0.20
Matches are distributed among these distances:
26 8 0.03
27 22 0.07
28 55 0.18
29 85 0.27
30 98 0.31
31 27 0.09
32 18 0.06
ACGTcount: A:0.35, C:0.28, G:0.02, T:0.36
Consensus pattern (29 bp):
AAAATTCCATTTTTAACCTCAATTTCACA
Found at i:38560165 original size:117 final size:117
Alignment explanation
Indices: 38559707--38560312 Score: 780
Period size: 117 Copynumber: 5.2 Consensus size: 117
38559697 CCTGGATGGT
* ** *
38559707 CCAAAAATTACCATTTTACCTAC-AAACTTTCCAAAATTCTGTTTTTAACCCCGATTTCACCAAA
1 CCAAAAATTACCATTTTACC-CCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAA
*
38559771 AATTACCATTTTACCC-CTAAACTTTCC-AAATTCCATTTTCAACCCCGGTTTCA
65 AATTACCATTTTACCCTC-AAACTTTCCAAAATTCCATTTT-AACCCCGATTTCA
* * *
38559824 TCAAAAATTACTATTTTACCCCTAAAC-TTCCAAAATTCCATTTTTAACCCCAATTTTACCAAAA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAA
* *
38559888 ATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTAACCCCGATTTCA
66 ATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTAACCCCGATTTCA
* * * *
38559940 CCAAAAATTACCATTTTACCCTTAAAC-TTCCAAAATTCCATTTTTAACCTCAGTTTCACAAAAA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAA
* *
38560004 ATTACCATTTTACCCTCGAAC-TTCTCAAAATTCCATTTTTAACCCC-ATTTTTA
66 ATTACCATTTTACCCTCAAACTTTC-CAAAATTCCA-TTTTAACCCCGA-TTTCA
* * *
38560057 CCAAAAATCACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTCAACCCCAATTTAACCAAAA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAA
* *
38560122 ATTACTATTTTACCCTCAAATTTTCCAAAATTCCATTTTAACCCCGATTTCA
66 ATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTAACCCCGATTTCA
* * * * ** *
38560174 CCTAAAATTACCATCTTACCCATAAACTTTCCAAAATTCTATTTTCGA-CCTAGATTTCACCAAA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCA-ATTTCACCAAA
* * *
38560238 AATTACTATTTTACCCTCAAATTTTCCAAAATTCCATTTTTAACCCTGATTTCA
65 AATTACCATTTTACCCTCAAACTTTCCAAAATTCCA-TTTTAACCCCGATTTCA
* *
38560292 TC-AAAATTACCATTTTGCCCC
1 CCAAAAATTACCATTTTACCCC
38560313 CACGAGTCCA
Statistics
Matches: 436, Mismatches: 42, Indels: 22
0.87 0.08 0.04
Matches are distributed among these distances:
115 3 0.01
116 160 0.37
117 192 0.44
118 78 0.18
119 3 0.01
ACGTcount: A:0.34, C:0.29, G:0.02, T:0.35
Consensus pattern (117 bp):
CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAA
ATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTAACCCCGATTTCA
Found at i:38572630 original size:76 final size:76
Alignment explanation
Indices: 38572500--38572796 Score: 504
Period size: 76 Copynumber: 3.9 Consensus size: 76
38572490 TCAATCCAAC
* * *
38572500 ATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAA
1 ATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTCTGAAATTGAA
38572565 GTAAGAGCAAG
66 GTAAGAGCAAG
* *
38572576 ATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAATCTTCATCTCTGAAATTGAA
1 ATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTCTGAAATTGAA
38572641 GTAAGAGCAAG
66 GTAAGAGCAAG
* *
38572652 ATCATTTCCTATCCTTTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCCCTGAAATTGAA
1 ATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTCTGAAATTGAA
38572717 GTAAGAGCAAG
66 GTAAGAGCAAG
* *
38572728 ATTATTTCCTATCATCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTCTTGAAATTGA
1 ATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTC-TGAAATTGA
38572793 AGTA
65 AGTA
38572797 GAGTTGGATA
Statistics
Matches: 207, Mismatches: 13, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
76 194 0.94
77 13 0.06
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (76 bp):
ATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTCTGAAATTGAA
GTAAGAGCAAG
Found at i:38572843 original size:191 final size:191
Alignment explanation
Indices: 38572589--38572987 Score: 674
Period size: 191 Copynumber: 2.1 Consensus size: 191
38572579 ATTTCCTATC
* * *
38572589 CTCTTGAAATTGAAGTAAAGCTGGATATCAAATCTTCATCTCTGAAATTGAAGTAAGAGCAAGAT
1 CTCTTGAAATTGAAGTAAAGCTGGATAACAAATCTTCATCTCCGAAATTGAAGTAACAGCAAGAT
*
38572654 CATTTCCTATCCTTTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCCCTGAAATTGAAGT
66 CATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCCCTGAAATTGAAGT
*
38572719 AAGAGCAAGATTATTTCCTATCATCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTAT
131 AAGAGCAAGATTATTTCCTATCATCTTGAAATTGAAGTAAAGCTGGATAACAAGTCTTTAT
* * * *
38572780 CTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCCGAAATTGAAGTAACAGCAAGAT
1 CTCTTGAAATTGAAGTAAAGCTGGATAACAAATCTTCATCTCCGAAATTGAAGTAACAGCAAGAT
* *
38572845 TATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTCTGAAATTGAAGT
66 CATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCCCTGAAATTGAAGT
*
38572910 AAGAGCAAGATTATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGTCTTTAT
131 AAGAGCAAGATTATTTCCTATCATCTTGAAATTGAAGTAAAGCTGGATAACAAGTCTTTAT
*
38572971 CTC-CGAAATTGAAGTAA
1 CTCTTGAAATTGAAGTAA
38572988 GAGCAAGATC
Statistics
Matches: 194, Mismatches: 14, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
190 12 0.06
191 182 0.94
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (191 bp):
CTCTTGAAATTGAAGTAAAGCTGGATAACAAATCTTCATCTCCGAAATTGAAGTAACAGCAAGAT
CATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCCCTGAAATTGAAGT
AAGAGCAAGATTATTTCCTATCATCTTGAAATTGAAGTAAAGCTGGATAACAAGTCTTTAT
Done.