Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 13 of 135
Found at i:5901723 original size:53 final size:53
Alignment explanation
Indices: 5901666--5901869 Score: 144
Period size: 53 Copynumber: 3.8 Consensus size: 53
5901656 TATTTTTTTA
* * *
5901666 GGTAATGGCCATGGCTTGACCATCACCCAAAAAATATTTTTTATCTAAAAAAG
1 GGTAATAGCCATGACTTGACAATCACCCAAAAAATATTTTTTATCTAAAAAAG
** * * *** * * *
5901719 GGTAATAATCATGGCTTGACAAGCATTAAAAAAAAATTTTATT-T-GATAAAGAG
1 GGTAATAGCCATGACTTGACAATCACCCAAAAAATATTTT-TTATCTA-AAAAAG
* * * * *
5901772 GGTGATGGTCATGACTTGGCTATCACCCAAAAAATATTTTTTTATCTAAAAAAAG
1 GGTAATAGCCATGACTTGACAATCACCCAAAAAATA-TTTTTTATCT-AAAAAAG
* * *
5901827 AGATGATAGCCATGACTTGACAAGT-ACCCAAAAACTATTTTTT
1 -GGTAATAGCCATGACTTGACAA-TCACCCAAAAAATATTTTTT
5901870 TTACCAGATA
Statistics
Matches: 113, Mismatches: 30, Indels: 14
0.72 0.19 0.09
Matches are distributed among these distances:
52 1 0.01
53 64 0.57
54 7 0.06
55 11 0.10
56 29 0.26
57 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (53 bp):
GGTAATAGCCATGACTTGACAATCACCCAAAAAATATTTTTTATCTAAAAAAG
Found at i:5903671 original size:17 final size:18
Alignment explanation
Indices: 5903631--5903672 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
5903621 CTTTCGAGCT
5903631 TATTATTAAATTTTTCATA
1 TATT-TTAAATTTTTCATA
* *
5903650 AATTTTAAGTTTTT-ATA
1 TATTTTAAATTTTTCATA
5903667 TATTTT
1 TATTTT
5903673 CTGTTAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 8 0.40
18 9 0.45
19 3 0.15
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (18 bp):
TATTTTAAATTTTTCATA
Found at i:5906189 original size:21 final size:19
Alignment explanation
Indices: 5906164--5906203 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
5906154 TAACTCAAAA
5906164 TAATCATCTTACTTACTCATT
1 TAATCATCTTA-TTA-TCATT
5906185 TAATCATCTTATTATCATT
1 TAATCATCTTATTATCATT
5906204 GTATTTGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 3 0.16
21 11 0.58
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATCATCTTATTATCATT
Found at i:5911594 original size:23 final size:23
Alignment explanation
Indices: 5911568--5911615 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
5911558 ACGTTAAAAA
5911568 AAAAAATATTTCTCTCAAGTTAT
1 AAAAAATATTTCTCTCAAGTTAT
* * * *
5911591 AAAATATTTTTTTCTGAAGTTAT
1 AAAAAATATTTCTCTCAAGTTAT
5911614 AA
1 AA
5911616 TAATGCTAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (23 bp):
AAAAAATATTTCTCTCAAGTTAT
Found at i:5914657 original size:13 final size:13
Alignment explanation
Indices: 5914601--5914673 Score: 58
Period size: 13 Copynumber: 5.6 Consensus size: 13
5914591 TTTAGCATGG
* *
5914601 TTTTTAAAAATTG
1 TTTTTAAAAAGTA
5914614 TTTTTAAAAAGTA
1 TTTTTAAAAAGTA
** * *
5914627 TAGTGAAAAAATA
1 TTTTTAAAAAGTA
*
5914640 CTTTTAAAAAGTA
1 TTTTTAAAAAGTA
*
5914653 TTTTTGAAAAGT-
1 TTTTTAAAAAGTA
5914665 TTTGTTAAA
1 TTT-TTAAA
5914674 GATTTAATTG
Statistics
Matches: 45, Mismatches: 14, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
12 3 0.07
13 42 0.93
ACGTcount: A:0.44, C:0.01, G:0.11, T:0.44
Consensus pattern (13 bp):
TTTTTAAAAAGTA
Found at i:5919221 original size:31 final size:30
Alignment explanation
Indices: 5919165--5919222 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
5919155 TTGATAAAGT
*
5919165 TAAAGTATAAGATTAAGTCCATAATTTTTA
1 TAAAGTATAAGATCAAGTCCATAATTTTTA
5919195 TAAAGTATAAGAATCAA-TACCATAATTT
1 TAAAGTATAAG-ATCAAGT-CCATAATTT
5919223 AAGCTAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (30 bp):
TAAAGTATAAGATCAAGTCCATAATTTTTA
Found at i:5920294 original size:30 final size:29
Alignment explanation
Indices: 5920234--5920294 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
5920224 TTTTATTTAT
** *
5920234 AATTAATTTTAATTTTTTTATGATTTAAA
1 AATTAATTTTAATTTTAATATGATTAAAA
5920263 AATTAATATTTAATATTTAATAT-ATTAAAA
1 AATTAAT-TTTAAT-TTTAATATGATTAAAA
5920293 AA
1 AA
5920295 ACTTAAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 7 0.26
30 14 0.52
31 6 0.22
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (29 bp):
AATTAATTTTAATTTTAATATGATTAAAA
Found at i:5920546 original size:16 final size:17
Alignment explanation
Indices: 5920504--5920551 Score: 69
Period size: 17 Copynumber: 2.6 Consensus size: 17
5920494 AATAGAATTT
5920504 TCAAAAAAAAAATCGTTTGA
1 TCAAAAAAAAAA---TTTGA
5920524 TCAAAAAAAAAATTTGA
1 TCAAAAAAAAAATTTGA
5920541 TCAAAAAAAAA
1 TCAAAAAAAAA
5920552 CATGTGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.57
20 12 0.43
ACGTcount: A:0.65, C:0.08, G:0.06, T:0.21
Consensus pattern (17 bp):
TCAAAAAAAAAATTTGA
Found at i:5925479 original size:4 final size:4
Alignment explanation
Indices: 5925466--5925512 Score: 62
Period size: 4 Copynumber: 12.2 Consensus size: 4
5925456 TGATTTGAAG
* *
5925466 GAAA -AAA GAAA GAAA AAAA AAAA GAAA GAAA GAAA GAAA G-AA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
5925512 G
1 G
5925513 TAGGAGAAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
3 6 0.15
4 33 0.85
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:5925528 original size:9 final size:9
Alignment explanation
Indices: 5925514--5925539 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
5925504 AGAAGAAAGT
5925514 AGGAGAAGA
1 AGGAGAAGA
5925523 AGGAGAAGA
1 AGGAGAAGA
5925532 AGGAGAAG
1 AGGAGAAG
5925540 GAGAAAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (9 bp):
AGGAGAAGA
Found at i:5925703 original size:18 final size:18
Alignment explanation
Indices: 5925680--5925714 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
5925670 GGAAGAAAGG
*
5925680 TAAGTTTGATTAATTTTT
1 TAAGTTAGATTAATTTTT
*
5925698 TAAGTTAGGTTAATTTT
1 TAAGTTAGATTAATTTT
5925715 AAATTTAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (18 bp):
TAAGTTAGATTAATTTTT
Found at i:5925808 original size:23 final size:23
Alignment explanation
Indices: 5925734--5925811 Score: 61
Period size: 23 Copynumber: 3.3 Consensus size: 23
5925724 TTTAAAATAT
*
5925734 TTTAATTTGTTAGTTAATTTGATTA
1 TTTAATTT-TTA-TTGATTTGATTA
* * *
5925759 TTTTAAGTTTT-TTGTTTTGTTTAA
1 -TTTAATTTTTATTGATTTGATT-A
5925783 TTTAATTTTTAATTGATTTG-TTA
1 TTTAATTTTT-ATTGATTTGATTA
5925806 TTTAAT
1 TTTAAT
5925812 GTTGTTATAG
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
23 24 0.56
24 3 0.07
25 9 0.21
26 7 0.16
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.65
Consensus pattern (23 bp):
TTTAATTTTTATTGATTTGATTA
Found at i:5926669 original size:14 final size:15
Alignment explanation
Indices: 5926650--5926695 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
5926640 AACCTAGCTA
5926650 ATTAATTACCAAAAT
1 ATTAATTACCAAAAT
*
5926665 A-TAATATA-AAAAAT
1 ATTAAT-TACCAAAAT
5926679 AATTAATTACCAAAAT
1 -ATTAATTACCAAAAT
5926695 A
1 A
5926696 ATATCCTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
14 9 0.36
15 7 0.28
16 9 0.36
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (15 bp):
ATTAATTACCAAAAT
Found at i:5926693 original size:16 final size:16
Alignment explanation
Indices: 5926648--5926697 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
5926638 TAAACCTAGC
5926648 TAATTAATTACCAAAA
1 TAATTAATTACCAAAA
*
5926664 T-A-TAATATA-AAAAA
1 TAATTAAT-TACCAAAA
5926678 TAATTAATTACCAAAA
1 TAATTAATTACCAAAA
5926694 TAAT
1 TAAT
5926698 ATCCTCATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 9 0.32
15 6 0.21
16 13 0.46
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (16 bp):
TAATTAATTACCAAAA
Found at i:5926764 original size:30 final size:30
Alignment explanation
Indices: 5926730--5926829 Score: 105
Period size: 30 Copynumber: 3.4 Consensus size: 30
5926720 AAATGGTACA
*
5926730 AAATAAATATTTATTTTGTACCATTTTGGT
1 AAATAAATATATATTTTGTACCATTTTGGT
** * * *
5926760 AAAT-AAT-GGTGTGTGGATACCATTTTGGT
1 AAATAAATATATATTTTG-TACCATTTTGGT
*
5926789 ATATAAATATATATTTTGTACCATTTTGGT
1 AAATAAATATATATTTTGTACCATTTTGGT
*
5926819 ATATAAATATA
1 AAATAAATATA
5926830 CCATTTTAGT
Statistics
Matches: 56, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
28 4 0.07
29 18 0.32
30 30 0.54
31 4 0.07
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (30 bp):
AAATAAATATATATTTTGTACCATTTTGGT
Found at i:5928100 original size:43 final size:43
Alignment explanation
Indices: 5928019--5928103 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
5928009 ATTAACCTGT
* *
5928019 TAAATTATATTACTTGACTCGTGTTAATATAGTTACATGTTAC
1 TAAATTATATTACTTGACTCGTATTAATATACTTACATGTTAC
* *
5928062 TAAATTATATTACTTTACTCTTATTAATAT-CTTGACATGTTA
1 TAAATTATATTACTTGACTCGTATTAATATACTT-ACATGTTA
5928104 TTAATTGTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 2 0.05
43 35 0.95
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (43 bp):
TAAATTATATTACTTGACTCGTATTAATATACTTACATGTTAC
Found at i:5928740 original size:45 final size:45
Alignment explanation
Indices: 5928671--5928806 Score: 209
Period size: 45 Copynumber: 3.0 Consensus size: 45
5928661 CCCTAGCTCA
* * *
5928671 TCAAGCCAATGATATCAGCTTCAGTTTGACGAGCCACCACAATAC
1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
*
5928716 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACTGCAATAC
1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
* * *
5928761 TCAAGCCAAGGATATCAGGCTGAGCTTGACGAGCCACCGCAATAC
1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
5928806 T
1 T
5928807 TTACTCCTCC
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 83 1.00
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.20
Consensus pattern (45 bp):
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
Found at i:5929090 original size:21 final size:21
Alignment explanation
Indices: 5929066--5929144 Score: 72
Period size: 21 Copynumber: 3.8 Consensus size: 21
5929056 TCATAGCTTT
5929066 AAACCCTAAACCCTAAACTCA
1 AAACCCTAAACCCTAAACTCA
* * *
5929087 AAACCCTAAA-CTTTAA-TCGT
1 AAACCCTAAACCCTAAACTC-A
* * *
5929107 AAACCTTAAACCATAAACTTA
1 AAACCCTAAACCCTAAACTCA
*
5929128 AAACCTTAAACCCTAAA
1 AAACCCTAAACCCTAAA
5929145 TCTTATACAT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
19 2 0.04
20 13 0.28
21 30 0.65
22 1 0.02
ACGTcount: A:0.48, C:0.29, G:0.01, T:0.22
Consensus pattern (21 bp):
AAACCCTAAACCCTAAACTCA
Found at i:5929138 original size:14 final size:13
Alignment explanation
Indices: 5929072--5929129 Score: 53
Period size: 14 Copynumber: 4.3 Consensus size: 13
5929062 CTTTAAACCC
5929072 TAAACCCTAAACT
1 TAAACCCTAAACT
*
5929085 CAAAACCCTAAACT
1 -TAAACCCTAAACT
* * *
5929099 TTAATCGTAAACCT
1 TAAACCCTAAA-CT
*
5929113 TAAACCATAAACT
1 TAAACCCTAAACT
5929126 TAAA
1 TAAA
5929130 ACCTTAAACC
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
13 13 0.37
14 22 0.63
ACGTcount: A:0.48, C:0.26, G:0.02, T:0.24
Consensus pattern (13 bp):
TAAACCCTAAACT
Found at i:5932199 original size:20 final size:20
Alignment explanation
Indices: 5932148--5932190 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
5932138 AACGCATTAC
* *
5932148 CTTT-CTCTCCTTCTTCTTT
1 CTTTCCTCTCTTTTTTCTTT
5932167 CTTTCCTCTCTTTTTTCTTT
1 CTTTCCTCTCTTTTTTCTTT
5932187 CTTT
1 CTTT
5932191 TTTTTCTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (20 bp):
CTTTCCTCTCTTTTTTCTTT
Found at i:5932313 original size:19 final size:19
Alignment explanation
Indices: 5932289--5932327 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
5932279 TTTACAATCA
*
5932289 AAATAAAATAAATACACAC
1 AAATAAAATAAACACACAC
5932308 AAATAAAATAAACACACAC
1 AAATAAAATAAACACACAC
5932327 A
1 A
5932328 GCACAATGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.69, C:0.18, G:0.00, T:0.13
Consensus pattern (19 bp):
AAATAAAATAAACACACAC
Found at i:5932744 original size:24 final size:24
Alignment explanation
Indices: 5932717--5932783 Score: 125
Period size: 24 Copynumber: 2.8 Consensus size: 24
5932707 AAAATTTATT
5932717 ATACTCTCATCATTACATTAATTA
1 ATACTCTCATCATTACATTAATTA
5932741 ATACTCTCATCATTACATTAATTA
1 ATACTCTCATCATTACATTAATTA
*
5932765 ATACTGTCATCATTACATT
1 ATACTCTCATCATTACATT
5932784 TTCATTTAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.36, C:0.21, G:0.01, T:0.42
Consensus pattern (24 bp):
ATACTCTCATCATTACATTAATTA
Found at i:5935297 original size:22 final size:22
Alignment explanation
Indices: 5935260--5935302 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
5935250 AAAATTATTT
**
5935260 AATAATTTTATTATTTCAAAAA
1 AATAATTTTAAAATTTCAAAAA
*
5935282 AATAATTTTAAAATTTTAAAA
1 AATAATTTTAAAATTTCAAAA
5935303 TAATTTGCTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AATAATTTTAAAATTTCAAAAA
Found at i:5936159 original size:2 final size:2
Alignment explanation
Indices: 5936152--5936182 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
5936142 ATAAATACTT
5936152 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5936183 TAAATGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5942707 original size:2 final size:2
Alignment explanation
Indices: 5942700--5942725 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
5942690 TTAAACAAAA
5942700 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
5942726 TTGTCAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5948681 original size:29 final size:29
Alignment explanation
Indices: 5948646--5948725 Score: 142
Period size: 29 Copynumber: 2.8 Consensus size: 29
5948636 TTGTGTACCT
**
5948646 AATGTTATATTTTAGTCACTTATGTTTGA
1 AATGTTACGTTTTAGTCACTTATGTTTGA
5948675 AATGTTACGTTTTAGTCACTTATGTTTGA
1 AATGTTACGTTTTAGTCACTTATGTTTGA
5948704 AATGTTACGTTTTAGTCACTTA
1 AATGTTACGTTTTAGTCACTTA
5948726 CATTATCGCG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.26, C:0.10, G:0.15, T:0.49
Consensus pattern (29 bp):
AATGTTACGTTTTAGTCACTTATGTTTGA
Found at i:5951665 original size:29 final size:30
Alignment explanation
Indices: 5951592--5951728 Score: 122
Period size: 31 Copynumber: 4.6 Consensus size: 30
5951582 CAAAATTGTG
* *
5951592 TTTTTT-TAAATTTTCAAGGAGGCCTAATTTT
1 TTTTTTCTAACTTTT-AA-GAGACCTAATTTT
5951623 TTTTTT-TAACTTTTAA-AGACC-AATTTT
1 TTTTTTCTAACTTTTAAGAGACCTAATTTT
* * *
5951650 TTTTTTACTAATTTTTAAGGGATCCTACAATTT
1 TTTTTT-CTAACTTTTAAGAGA-CCTA-ATTTT
* * *
5951683 TTTTTACCAAGTTTTAAGAGACCTAATTTT
1 TTTTTTCTAACTTTTAAGAGACCTAATTTT
5951713 TTTTTTC-AACTTTTAA
1 TTTTTTCTAACTTTTAA
5951729 AGAACATAAA
Statistics
Matches: 88, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
27 12 0.14
28 4 0.05
29 17 0.19
30 14 0.16
31 19 0.22
32 13 0.15
33 9 0.10
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.53
Consensus pattern (30 bp):
TTTTTTCTAACTTTTAAGAGACCTAATTTT
Found at i:5951684 original size:32 final size:30
Alignment explanation
Indices: 5951648--5951717 Score: 86
Period size: 32 Copynumber: 2.3 Consensus size: 30
5951638 AAGACCAATT
* * *
5951648 TTTTTTTTACTAATTTTTAAGGGATCCTACAA
1 TTTTTTTTACCAAGTTTTAAGAGA-CCTA-AA
*
5951680 TTTTTTTTACCAAGTTTTAAGAGACCTAAT
1 TTTTTTTTACCAAGTTTTAAGAGACCTAAA
5951710 TTTTTTTT
1 TTTTTTTT
5951718 TCAACTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 9 0.26
31 4 0.12
32 21 0.62
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.54
Consensus pattern (30 bp):
TTTTTTTTACCAAGTTTTAAGAGACCTAAA
Found at i:5953227 original size:19 final size:19
Alignment explanation
Indices: 5953187--5953228 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
5953177 AACATATATT
* *
5953187 AATATTTCATTTTACATTA
1 AATATTTAATTTTACATCA
*
5953206 AATATTTAATTTTATATCA
1 AATATTTAATTTTACATCA
5953225 AATA
1 AATA
5953229 CATGAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (19 bp):
AATATTTAATTTTACATCA
Found at i:5954273 original size:161 final size:158
Alignment explanation
Indices: 5954083--5954377 Score: 403
Period size: 161 Copynumber: 1.8 Consensus size: 158
5954073 ATCAAATATG
* * * *
5954083 TTTTTTATTACACTAAAGAAAATATTAACTAATAAAATTCGTTAATTTCGTTAGTAACGTATGAG
1 TTTTTTATTAAAATAAAGAAAACATTAACTAATAAAATTCGTTAATTT-ATTAGTAACGTATGAG
* * *
5954148 C-ACTAATCAAAGAAATTTTTTATTACAATAAAGAGAATATTAACTACTAAAATTCGTTAATTTC
65 CGA-TAATCAAAGAAATATTTTATTACAATAAA-A-AATATTAACTAATAAAATTCGATAATTTC
5954212 ATTAGTGACATGTGACAGATCATCGAAGAAAT
127 ATTAGTGACATGTGACAGATCATCGAAGAAAT
* * * *
5954244 TTTTTTATTAAAATAAAGAGAACATTAACTAATAAATTTCGTTAATTTATTAGTGACGTGTGAGC
1 TTTTTTATTAAAATAAAGAAAACATTAACTAATAAAATTCGTTAATTTATTAGTAACGTATGAGC
* * * * *
5954309 GATTATGAAATATATATTTTATTACAATAAAAAATATTAACTAATAAAATTCGATAATTTTATTA
66 GATAATCAAAGAAATATTTTATTACAATAAAAAATATTAACTAATAAAATTCGATAATTTCATTA
5954374 GTGA
131 GTGA
5954378 TATTGAGCAA
Statistics
Matches: 117, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
158 34 0.29
159 1 0.01
160 38 0.32
161 44 0.38
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.38
Consensus pattern (158 bp):
TTTTTTATTAAAATAAAGAAAACATTAACTAATAAAATTCGTTAATTTATTAGTAACGTATGAGC
GATAATCAAAGAAATATTTTATTACAATAAAAAATATTAACTAATAAAATTCGATAATTTCATTA
GTGACATGTGACAGATCATCGAAGAAAT
Found at i:5954290 original size:81 final size:82
Alignment explanation
Indices: 5954083--5954377 Score: 356
Period size: 80 Copynumber: 3.7 Consensus size: 82
5954073 ATCAAATATG
* * * * *
5954083 TTTTTTATTACACTAAAGAAAATATTAACTAATAAAATTCGTTAATTTCGTTAGTAACGTATGAG
1 TTTTTTATTACAATAAAGAGAATATTAACTAATAAAATTCGTTAATTTCATTAGTGACGTGTGAG
* *
5954148 CA-CTAATCAAAGAAA-
66 CAGATAATCGAAGAAAT
* *
5954163 TTTTTTATTACAATAAAGAGAATATTAACTACTAAAATTCGTTAATTTCATTAGTGACATGTGA-
1 TTTTTTATTACAATAAAGAGAATATTAACTAATAAAATTCGTTAATTTCATTAGTGACGTGTGAG
*
5954227 CAGATCATCGAAGAAAT
66 CAGATAATCGAAGAAAT
* * *
5954244 TTTTTTATTAAAATAAAGAGAACATTAACTAATAAATTTCGTTAATTT-ATTAGTGACGTGTGAG
1 TTTTTTATTACAATAAAGAGAATATTAACTAATAAAATTCGTTAATTTCATTAGTGACGTGTGAG
* *
5954308 C-GATTAT-GAA-ATAT
66 CAGATAATCGAAGAAAT
* * *
5954322 ATATTTTATTACAATAAA-A-AATATTAACTAATAAAATTCGATAATTTTATTAGTGA
1 -TTTTTTATTACAATAAAGAGAATATTAACTAATAAAATTCGTTAATTTCATTAGTGA
5954378 TATTGAGCAA
Statistics
Matches: 188, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
77 25 0.13
78 12 0.06
79 20 0.11
80 86 0.46
81 45 0.24
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.38
Consensus pattern (82 bp):
TTTTTTATTACAATAAAGAGAATATTAACTAATAAAATTCGTTAATTTCATTAGTGACGTGTGAG
CAGATAATCGAAGAAAT
Found at i:5954367 original size:77 final size:77
Alignment explanation
Indices: 5954061--5954466 Score: 352
Period size: 80 Copynumber: 5.1 Consensus size: 77
5954051 TCGTTAACAT
* * * *
5954061 GTGTAAGCGATCATCAAATATGTTTTTTATTACACTAAAGAAAATATTAACTAATAAAATTCGTT
1 GTGTGAGCGATAATCAAATATATTTTTTATTACAAT-AA-AAAATATTAACTAATAAAATTCGTT
* *
5954126 AATTTCGTTAGTAAC
64 AATTT-ATTAGTGAC
* * * *
5954141 GTATGAGC-ACTAATCAAAGAAATTTTTTATTACAATAAAGAGAATATTAACTACTAAAATTCGT
1 GTGTGAGCGA-TAATCAAATATATTTTTTATTACAATAAA-A-AATATTAACTAATAAAATTCGT
5954205 TAATTTCATTAGTGAC
63 TAATTT-ATTAGTGAC
* * * * * *
5954221 ATGTGA-CAGATCATCGAAGAAAT-TTTTTTATTAAAATAAAGAGAACATTAACTAATAAATTTC
1 GTGTGAGC-GATAATC-AA-ATATATTTTTTATTACAATAAA-A-AATATTAACTAATAAAATTC
5954284 GTTAATTTATTAGTGAC
61 GTTAATTTATTAGTGAC
* * * *
5954301 GTGTGAGCGATTATGAAATATATATTTTATTACAATAAAAAATATTAACTAATAAAATTCGATAA
1 GTGTGAGCGATAATCAAATATATTTTTTATTACAATAAAAAATATTAACTAATAAAATTCGTTAA
*
5954366 TTTTATTAGTGAT
66 -TTTATTAGTGAC
* * * * * * * * *
5954379 AT-TGAGCAATAATTAAATATGTCTCTTATTACAACTAAAAAATATTAATTGATAAAATTTGTTA
1 GTGTGAGCGATAATCAAATATATTTTTTATTACAA-TAAAAAATATTAACTAATAAAATTCGTTA
** * *
5954443 ATTCGTTGGTGAT
65 ATTTATTAGTGAC
5954456 GTGTGAGCGAT
1 GTGTGAGCGAT
5954467 CATTACAGTT
Statistics
Matches: 269, Mismatches: 45, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
77 58 0.22
78 50 0.19
79 22 0.08
80 89 0.33
81 48 0.18
82 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37
Consensus pattern (77 bp):
GTGTGAGCGATAATCAAATATATTTTTTATTACAATAAAAAATATTAACTAATAAAATTCGTTAA
TTTATTAGTGAC
Found at i:5954529 original size:18 final size:18
Alignment explanation
Indices: 5954508--5954543 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
5954498 TGTCATTAAC
*
5954508 TTAATTACAATAATCTAT
1 TTAATTACAAGAATCTAT
5954526 TTAATTACAAGAATCTAT
1 TTAATTACAAGAATCTAT
5954544 CAATAAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.11, G:0.03, T:0.42
Consensus pattern (18 bp):
TTAATTACAAGAATCTAT
Found at i:5954570 original size:30 final size:28
Alignment explanation
Indices: 5954515--5954573 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 28
5954505 AACTTAATTA
5954515 CAATAATCTATTTAATTACAAGAATCTAT
1 CAATAATCTATTTAATTAC-AGAATCTAT
5954544 CAATAAATCTATTGTAATTATC-GAATCTAT
1 CAAT-AATCTATT-TAATTA-CAGAATCTAT
5954574 TATAATTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 4 0.15
30 16 0.59
31 6 0.22
32 1 0.04
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.39
Consensus pattern (28 bp):
CAATAATCTATTTAATTACAGAATCTAT
Found at i:5956056 original size:23 final size:22
Alignment explanation
Indices: 5956030--5956076 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
5956020 CATTTTATAT
*
5956030 TTATATATTACATATATAAATAA
1 TTATATATTACA-ATATAAAAAA
* *
5956053 TTATATTTTCCAATATAAAAAA
1 TTATATATTACAATATAAAAAA
5956075 TT
1 TT
5956077 GATGTTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (22 bp):
TTATATATTACAATATAAAAAA
Found at i:5956830 original size:31 final size:31
Alignment explanation
Indices: 5956760--5956831 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
5956750 ACAATTAGAG
*
5956760 TTTCATGTATATAATTAACACCAAATTAAAA
1 TTTCATGTATATAATTAACACCAAATCAAAA
**
5956791 -TTCATGTATATAATTACACATTAAATCAAAA
1 TTTCATGTATATAATTA-ACACCAAATCAAAA
5956822 TTTC-TGTATA
1 TTTCATGTATA
5956832 ATTTTAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 16 0.44
31 17 0.47
32 3 0.08
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.39
Consensus pattern (31 bp):
TTTCATGTATATAATTAACACCAAATCAAAA
Found at i:5958770 original size:79 final size:76
Alignment explanation
Indices: 5958675--5958951 Score: 319
Period size: 79 Copynumber: 3.6 Consensus size: 76
5958665 TGATAAGGAG
* *
5958675 AATATTAACTAATAAAATTCGTTAATTTTGTTAGTGACGTGTGAGCACTCATCAAAGAGTTTTTT
1 AATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTGTGAGCA-TTATCAAAGAGTTTTTT
5958740 ATTACAATAAAGA
65 ATTACAATAAA-A
* * * *
5958753 GAATATTAACTACTAAAACTCGTTAATTTCGTTAGTGACGTGTGAGAGATTATGAAAGA-TATCT
1 -AATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTGTGAG-CATTATCAAAGAGT-T-T
*
5958817 ATTATTACAATAAAA
62 TTTATTACAATAAAA
* * *
5958832 AATATTAACTAATAAAATTCGTTAATTTCGTTAATGACGT-TGAGCGATTATTAAAGATGTCTTT
1 AATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTGTGAGC-ATTATCAAAGA-GTTTTT
*
5958896 TAGTACAACTAAAA
64 TATTACAA-TAAAA
* * *
5958910 AA-ATTAACTAATAAAATTCATTAA-TTCATTAGTGATGTGTGA
1 AATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTGTGA
5958952 ATGATCGTCG
Statistics
Matches: 171, Mismatches: 19, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
76 11 0.06
77 47 0.27
78 45 0.26
79 53 0.31
80 15 0.09
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (76 bp):
AATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTGTGAGCATTATCAAAGAGTTTTTTA
TTACAATAAAA
Found at i:5958922 original size:77 final size:78
Alignment explanation
Indices: 5958675--5958951 Score: 348
Period size: 77 Copynumber: 3.6 Consensus size: 78
5958665 TGATAAGGAG
* * *
5958675 AATATTAACTAATAAAATTCGTTAATTTTGTTAGTGACGTGTGAGC-ACTCATCAAAGA-GTTTT
1 AATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTGTGAGCGA-TTATCAAAGATGTCTT
5958738 TTATTACAATAAAGA
65 TTATTACAATAAA-A
* * * * * *
5958753 GAATATTAACTACTAAAACTCGTTAATTTCGTTAGTGACGTGTGAGAGATTATGAAAGATATCTA
1 -AATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTGTGAGCGATTATCAAAGATGTCTT
5958818 TTATTACAATAAAA
65 TTATTACAATAAAA
* *
5958832 AATATTAACTAATAAAATTCGTTAATTTCGTTAATGACGT-TGAGCGATTATTAAAGATGTCTTT
1 AATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTGTGAGCGATTATCAAAGATGTCTTT
*
5958896 TAGTACAACTAAAA
66 TATTACAA-TAAAA
* * *
5958910 AA-ATTAACTAATAAAATTCATTAA-TTCATTAGTGATGTGTGA
1 AATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTGTGA
5958952 ATGATCGTCG
Statistics
Matches: 173, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
76 11 0.06
77 51 0.29
78 44 0.25
79 51 0.29
80 16 0.09
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (78 bp):
AATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTGTGAGCGATTATCAAAGATGTCTTT
TATTACAATAAAA
Found at i:5967542 original size:29 final size:30
Alignment explanation
Indices: 5967482--5967544 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
5967472 TTTAAGTAAA
5967482 TTTTAAAATCAATAATTTATTAGCAGTTTT
1 TTTTAAAATCAATAATTTATTAGCAGTTTT
5967512 TTTTAAAATCAATAATTTATTAGCAGTTTT
1 TTTTAAAATCAATAATTTATTAGCAGTTTT
5967542 TTT
1 TTT
5967545 ATTGCTTAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (30 bp):
TTTTAAAATCAATAATTTATTAGCAGTTTT
Found at i:5967596 original size:2 final size:2
Alignment explanation
Indices: 5967589--5967626 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
5967579 TATGTTGCTT
5967589 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
5967627 TTTTGGCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:5970136 original size:13 final size:13
Alignment explanation
Indices: 5970118--5970154 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
5970108 TATAGTATAT
5970118 TTTATTATTTAAA
1 TTTATTATTTAAA
*
5970131 TTTATTATAT-AA
1 TTTATTATTTAAA
5970143 TTTA-TATTTAAA
1 TTTATTATTTAAA
5970155 AAATAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
11 4 0.19
12 8 0.38
13 9 0.43
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTTATTATTTAAA
Found at i:5970835 original size:18 final size:18
Alignment explanation
Indices: 5970802--5970836 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
5970792 ATTTAAATAA
* *
5970802 TAAATTTATTTTTAAATT
1 TAAATTTAATTATAAATT
5970820 TAAATTTAATTATAAAT
1 TAAATTTAATTATAAAT
5970837 GTATACAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TAAATTTAATTATAAATT
Found at i:5972759 original size:63 final size:64
Alignment explanation
Indices: 5972658--5972821 Score: 217
Period size: 63 Copynumber: 2.5 Consensus size: 64
5972648 ATTCCATTTT
*
5972658 TATTATTTTTA-TTTATTTATTTATTTATTATTATTTTTATGAACATAAATAAAT-A-TAAAATA
1 TATTAATTTTATTTTA-TTATTTATTTATTATTA-TTTTATGAACATAAATAAATAAGTAAAATA
5972720 A
64 A
* *
5972721 TATTTATTTTATTTTATTATTTATTTATTTATTATTTTATGAATATAAATAAATAAATGTAAAAT
1 TATTAATTTTATTTTATTATTTATTTA-TTATTATTTTATGAACATAAATAAAT-AA-GTAAAAT
*
5972786 AT
63 AA
*
5972788 TATTAATTTTGTTTTATTATTTATTTATTATTAT
1 TATTAATTTTATTTTATTATTTATTTATTATTAT
5972822 AAATAAATAA
Statistics
Matches: 89, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
63 39 0.44
64 10 0.11
65 1 0.01
66 7 0.08
67 32 0.36
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (64 bp):
TATTAATTTTATTTTATTATTTATTTATTATTATTTTATGAACATAAATAAATAAGTAAAATAA
Found at i:5972773 original size:67 final size:66
Alignment explanation
Indices: 5972656--5972821 Score: 205
Period size: 67 Copynumber: 2.5 Consensus size: 66
5972646 CAATTCCATT
* *
5972656 TTTATTATTTTTATTTATTTATTTATTTATTATTATTTTTATGAACATAAATAAATATAAAATAA
1 TTTATTTTTTTTA-TTATTTATTTATTTATTATTATTTATATGAACATAAATAAATATAAAATAA
5972721 TA
65 TA
*
5972723 TTTATTTTATTTTATTATTTATTTATTTATTATT-TTATGAATAT-AA-ATAAATAAATGTAAAA
1 TTTATTTT-TTTTATTATTTATTTATTTATTATTATT-T--ATATGAACATAAATAAATATAAAA
*
5972785 TATTA
62 TAATA
*
5972790 TTAATTTTGTTTTATTATTTATTTA-TTATTAT
1 TTTATTTT-TTTTATTATTTATTTATTTATTAT
5972822 AAATAAATAA
Statistics
Matches: 89, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
66 9 0.10
67 70 0.79
68 7 0.08
69 3 0.03
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (66 bp):
TTTATTTTTTTTATTATTTATTTATTTATTATTATTTATATGAACATAAATAAATATAAAATAAT
A
Found at i:5977830 original size:6 final size:6
Alignment explanation
Indices: 5977821--5977877 Score: 69
Period size: 6 Copynumber: 9.0 Consensus size: 6
5977811 AAAAAATTAA
* *
5977821 AAAAAG AAAAAG AAAAAAG ACAAAG AAAAGG AAAAAG AAGAAAAG AAAAAG
1 AAAAAG AAAAAG -AAAAAG AAAAAG AAAAAG AAAAAG -A-AAAAG AAAAAG
5977872 AAAAAG
1 AAAAAG
5977878 GGGAGGTCGA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
6 31 0.70
7 8 0.18
8 5 0.11
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:5977847 original size:19 final size:18
Alignment explanation
Indices: 5977822--5977876 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 18
5977812 AAAAATTAAA
5977822 AAAAGAAAAAGAAAAAAG
1 AAAAGAAAAAGAAAAAAG
*
5977840 ACAAAGAAAAGGAAAAAGAAG
1 A-AAAGAAAAAG-AAAA-AAG
5977861 AAAAGAAAAAGAAAAA
1 AAAAGAAAAAGAAAAA
5977877 GGGGAGGTCG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 2 0.06
19 13 0.41
20 13 0.41
21 4 0.12
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAAGAAAAAAG
Found at i:5977849 original size:26 final size:27
Alignment explanation
Indices: 5977820--5977876 Score: 82
Period size: 25 Copynumber: 2.2 Consensus size: 27
5977810 TAAAAAATTA
*
5977820 AAAAAAGAAAAAGAA-AAAAGACAAAG
1 AAAAAAGAAAAAGAAGAAAAGAAAAAG
*
5977846 -AAAAGGAAAAAGAAGAAAAGAAAAAG
1 AAAAAAGAAAAAGAAGAAAAGAAAAAG
5977872 AAAAA
1 AAAAA
5977877 GGGGAGGTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 13 0.48
26 10 0.37
27 4 0.15
ACGTcount: A:0.81, C:0.02, G:0.18, T:0.00
Consensus pattern (27 bp):
AAAAAAGAAAAAGAAGAAAAGAAAAAG
Found at i:5977876 original size:20 final size:20
Alignment explanation
Indices: 5977822--5977877 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
5977812 AAAAATTAAA
5977822 AAAAGAAAAAG-AAAA-AAG
1 AAAAGAAAAAGAAAAAGAAG
*
5977840 ACAAAGAAAAGGAAAAAGAAG
1 A-AAAGAAAAAGAAAAAGAAG
5977861 AAAAGAAAAAGAAAAAG
1 AAAAGAAAAAGAAAAAG
5977878 GGGAGGTCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 1 0.03
19 9 0.27
20 19 0.58
21 4 0.12
ACGTcount: A:0.79, C:0.02, G:0.20, T:0.00
Consensus pattern (20 bp):
AAAAGAAAAAGAAAAAGAAG
Found at i:5978863 original size:50 final size:50
Alignment explanation
Indices: 5978800--5978945 Score: 204
Period size: 50 Copynumber: 2.9 Consensus size: 50
5978790 ATCTTTTACC
*
5978800 CCTAAAGCGGTGGAGGTGCAGATTGAAACTGCAATGGTAAATCTCATACA
1 CCTAAAGCTGTGGAGGTGCAGATTGAAACTGCAATGGTAAATCTCATACA
*
5978850 CCTAAAGCTGTGGAGGTGCAGATTGAAACCGCAAT-GTCAAATCTCATACA
1 CCTAAAGCTGTGGAGGTGCAGATTGAAACTGCAATGGT-AAATCTCATACA
* * * * * *
5978900 CCTAAAGCTGTAGAGGAGCAGAATGAAGCTGTAATGGCAAATCTCA
1 CCTAAAGCTGTGGAGGTGCAGATTGAAACTGCAATGGTAAATCTCA
5978946 GTCATTTAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
49 2 0.02
50 82 0.96
51 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (50 bp):
CCTAAAGCTGTGGAGGTGCAGATTGAAACTGCAATGGTAAATCTCATACA
Found at i:5978956 original size:50 final size:50
Alignment explanation
Indices: 5978800--5978976 Score: 194
Period size: 50 Copynumber: 3.5 Consensus size: 50
5978790 ATCTTTTACC
* * * *
5978800 CCTAAAGCGGTGGAGGTGCAGATTGAAACTGCAATGGTAAATCTCATACA
1 CCTAAAGCTGTAGAGGAGCAGATTGAAACTGCAATGGCAAATCTCATACA
* * * *
5978850 CCTAAAGCTGTGGAGGTGCAGATTGAAACCGCAATGTCAAATCTCATACA
1 CCTAAAGCTGTAGAGGAGCAGATTGAAACTGCAATGGCAAATCTCATACA
* * *
5978900 CCTAAAGCTGTAGAGGAGCAGAATGAAGCTGTAATGGCAAATCTCAGT-CA
1 CCTAAAGCTGTAGAGGAGCAGATTGAAACTGCAATGGCAAATCTCA-TACA
** * * *
5978950 TTTAAAGCTATAGAAGAGAAGATTGAA
1 CCTAAAGCTGTAGAGGAGCAGATTGAA
5978977 GTCATAAGGA
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
50 108 0.99
51 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (50 bp):
CCTAAAGCTGTAGAGGAGCAGATTGAAACTGCAATGGCAAATCTCATACA
Found at i:5979164 original size:80 final size:80
Alignment explanation
Indices: 5979031--5981208 Score: 3582
Period size: 80 Copynumber: 27.2 Consensus size: 80
5979021 AATTACAACC
* * * *
5979031 TCCAATCTTTTACCCTCACCAGAGGGCAAGATTGAAAACCATCAGATCTTTTACCCCTATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
* *
5979096 GGTAAATTGAAGAAA
66 GGCAGATTGAAGAAA
*
5979111 TCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5979176 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* *
5979191 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCAATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5979256 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
*
5979271 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTATCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
5979336 GGTAGATTGAAGAAA
66 GGCAGATTGAAGAAA
** *
5979351 TTTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATTCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5979416 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* *
5979431 TTCTATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5979496 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* * *
5979511 TTCTATCTTTTACCCTAACTAGAGGG-AAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5979575 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* * *
5979590 TCTAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTTCTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5979655 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
*
5979670 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCGTGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCAT--
5979735 GGCAGATTGGACAGATTGAAGAAA
64 -G--G---GG-CAGATTGAAGAAA
5979759 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5979824 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* * *
5979839 TCCAATCTTTTACCTTAACTAGAGTGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5979904 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
*
5979919 TCCAACCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5979984 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* * * * *
5979999 TCCAATCTTTTGCCCTAACTAAAAGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGA
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
5980064 GACAGATTGAAGAAA
66 GGCAGATTGAAGAAA
5980079 TCCAATCTTTTACCCTAACCAGAGGG-AAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5980143 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* * * *
5980158 TCTAATCTTTTACCCTAACCAGAGGG-AATATTGAAGACCATCTGATCTTCTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
5980222 GGCAAATTGAAGAAA
66 GGCAGATTGAAGAAA
5980237 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5980302 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* * *
5980317 TCCAATCTTTTACCTTAACTAGAGTGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5980382 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* *
5980397 TCCAACCTTTTACCCTGACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5980462 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* * *
5980477 TCCAATCTTTTACCCTAACTAAAAGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
5980542 GACAGATTGAAGAAA
66 GGCAGATTGAAGAAA
5980557 TCCAATCTTTTACCCTAACCAGAGGG-AAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5980621 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* *
5980636 TCTAATCTTTTACCCTAACCAGAGGG-AAGATTGAAGACCATCCGATCTTCTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
5980700 GGCAAATTGAAGAAA
66 GGCAGATTGAAGAAA
5980715 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
5980780 GGCAAATTGAAGAAA
66 GGCAGATTGAAGAAA
* *
5980795 TCCAATCTTTTACCCTAACCAGA-GGAAAGATTAAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5980859 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* *
5980874 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTCTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5980939 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* *
5980954 TCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAAACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
5981019 GCCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* * *
5981034 TCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCTGATCTTTTACTCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
5981099 GGCAGATTGAAAAAA
66 GGCAGATTGAAGAAA
* * * * *
5981114 TCCAATCTTTTACCCTAACCAAAGGGC-AGATTGAAGACCATCAGATCTCTTACCTCGACCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
5981178 GGCA-AGTTGAA-ACAA
66 GGCAGA-TTGAAGA-AA
*
5981193 TCTAATCTTTTACCCT
1 TCCAATCTTTTACCCT
5981209 TAAAGTTATA
Statistics
Matches: 1973, Mismatches: 110, Indels: 31
0.93 0.05 0.01
Matches are distributed among these distances:
78 2 0.00
79 512 0.26
80 1376 0.70
81 2 0.00
83 1 0.00
84 1 0.00
85 1 0.00
86 1 0.00
88 2 0.00
89 75 0.04
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (80 bp):
TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
GGCAGATTGAAGAAA
Found at i:5980407 original size:478 final size:479
Alignment explanation
Indices: 5979031--5981208 Score: 3621
Period size: 478 Copynumber: 4.5 Consensus size: 479
5979021 AATTACAACC
* * * * * * *
5979031 TCCAATCTTTTACCCTCACCAGAGGGCAAGATTGAAAACCATCAGATCTTTTACCCCTATCATGG
1 TCCAATCTTTTACCCTAACTAAAAGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
** *
5979096 GGTAAATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTT
66 GACAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTT
5979161 TTACCCCGATCATGGGGCAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGA
131 TTACCCCGATCATGGGGCAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGG-AAGATTGA
* * *
5979226 AGACCATCCAATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACC
195 AGACCATCCGATCTTCTACCCCGATCATGGGGCAAATTGAAGAAATCCAATCTTTTACCCTAACC
* * **
5979291 AGAGGGCAAGATTGAAGACCATCCGATCTTTTATCCCGATCATGGGGTAGATTGAAGAAATTTAA
260 AGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAA
* *
5979356 TCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATTCGATCTTTTACCCCGATCATGGGGCAG
325 TCTTTTACCCTAACCAGAGTGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAG
* * *
5979421 ATTGAAGAAATTCTATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACC
390 ATTGAAGAAATCCAACCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACC
5979486 CCGATCATGGGGCAGATTGAAGAAA
455 CCGATCATGGGGCAGATTGAAGAAA
* * * *
5979511 TTCTATCTTTTACCCTAACT-AGAGGGAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACTAAAAGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
* *
5979575 GGCAGATTGAAGAAATCTAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTT
66 GACAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTT
* *
5979640 CTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGA
131 TTACCCCGATCATGGGGCAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGG-AAGATTGA
* *
5979705 AGACCATCCGATCTTTTACCCCGATCGTGGGGCAGATTGGACAGATTGAAGAAATCCAATCTTTT
195 AGACCATCCGATCTTCTACCCCGATCATGGGGC-------A-A-ATTGAAGAAATCCAATCTTTT
5979770 ACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAA
251 ACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAA
* *
5979835 GAAATCCAATCTTTTACCTTAACTAGAGTGCAAGATTGAAGACCATCCGATCTTTTACCCCGATC
316 GAAATCCAATCTTTTACCCTAACCAGAGTGCAAGATTGAAGACCATCCGATCTTTTACCCCGATC
5979900 ATGGGGCAGATTGAAGAAATCCAACCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGA
381 ATGGGGCAGATTGAAGAAATCCAACCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGA
5979965 TCTTTTACCCCGATCATGGGGCAGATTGAAGAAA
446 TCTTTTACCCCGATCATGGGGCAGATTGAAGAAA
* *
5979999 TCCAATCTTTTGCCCTAACTAAAAGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGA
1 TCCAATCTTTTACCCTAACTAAAAGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
5980064 GACAGATTGAAGAAATCCAATCTTTTACCCTAACCAGAGGG-AAGATTGAAGACCATCCGATCTT
66 GACAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTT
*
5980128 TTACCCCGATCATGGGGCAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGAATATTGAA
131 TTACCCCGATCATGGGGCAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGAAGATTGAA
*
5980193 GACCATCTGATCTTCTACCCCGATCATGGGGCAAATTGAAGAAATCCAATCTTTTACCCTAACCA
196 GACCATCCGATCTTCTACCCCGATCATGGGGCAAATTGAAGAAATCCAATCTTTTACCCTAACCA
5980258 GAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAAT
261 GAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAAT
* *
5980323 CTTTTACCTTAACTAGAGTGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGA
326 CTTTTACCCTAACCAGAGTGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGA
*
5980388 TTGAAGAAATCCAACCTTTTACCCTGACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCC
391 TTGAAGAAATCCAACCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCC
5980453 CGATCATGGGGCAGATTGAAGAAA
456 CGATCATGGGGCAGATTGAAGAAA
5980477 TCCAATCTTTTACCCTAACTAAAAGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACTAAAAGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
5980542 GACAGATTGAAGAAATCCAATCTTTTACCCTAACCAGAGGG-AAGATTGAAGACCATCCGATCTT
66 GACAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTT
5980606 TTACCCCGATCATGGGGCAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGAAGATTGAA
131 TTACCCCGATCATGGGGCAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGAAGATTGAA
5980671 GACCATCCGATCTTCTACCCCGATCATGGGGCAAATTGAAGAAATCCAATCTTTTACCCTAACCA
196 GACCATCCGATCTTCTACCCCGATCATGGGGCAAATTGAAGAAATCCAATCTTTTACCCTAACCA
*
5980736 GAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAAATTGAAGAAATCCAAT
261 GAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAAT
* *
5980801 CTTTTACCCTAACCAGAG-GAAAGATTAAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGA
326 CTTTTACCCTAACCAGAGTGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGA
* * *
5980865 TTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTCTACCC
391 TTGAAGAAATCCAACCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCC
5980930 CGATCATGGGGCAGATTGAAGAAA
456 CGATCATGGGGCAGATTGAAGAAA
* * *
5980954 TCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAAACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACTAAAAGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
* *
5981019 GCCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCTGATCTT
66 GACAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTT
* * * * *
5981084 TTACTCCGATCATGGGGCAGATTGAAAAAATCCAATCTTTTACCCTAACCAAAGGGCAGATTGAA
131 TTACCCCGATCATGGGGCAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGAAGATTGAA
* * * * *
5981149 GACCATCAGATC-TCTTACCTCGACCATGGGGCAAGTTGAA-ACAATCTAATCTTTTACCCT
196 GACCATCCGATCTTC-TACCCCGATCATGGGGCAAATTGAAGA-AATCCAATCTTTTACCCT
5981209 TAAAGTTATA
Statistics
Matches: 1610, Mismatches: 75, Indels: 28
0.94 0.04 0.02
Matches are distributed among these distances:
477 233 0.14
478 716 0.44
479 194 0.12
480 17 0.01
486 1 0.00
487 37 0.02
488 333 0.21
489 79 0.05
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (479 bp):
TCCAATCTTTTACCCTAACTAAAAGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
GACAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTT
TTACCCCGATCATGGGGCAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGAAGATTGAA
GACCATCCGATCTTCTACCCCGATCATGGGGCAAATTGAAGAAATCCAATCTTTTACCCTAACCA
GAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAAT
CTTTTACCCTAACCAGAGTGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGA
TTGAAGAAATCCAACCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCC
CGATCATGGGGCAGATTGAAGAAA
Found at i:5981832 original size:63 final size:64
Alignment explanation
Indices: 5981731--5981894 Score: 217
Period size: 63 Copynumber: 2.5 Consensus size: 64
5981721 ATTCCATTTT
*
5981731 TATTATTTTTA-TTTATTTATTTATTTATTATTATTTTTATGAACATAAATAAAT-A-TAAAATA
1 TATTAATTTTATTTTA-TTATTTATTTATTATTA-TTTTATGAACATAAATAAATAAGTAAAATA
5981793 A
64 A
* *
5981794 TATTTATTTTATTTTATTATTTATTTATTTATTATTTTATGAATATAAATAAATAAATGTAAAAT
1 TATTAATTTTATTTTATTATTTATTTA-TTATTATTTTATGAACATAAATAAAT-AA-GTAAAAT
*
5981859 AT
63 AA
*
5981861 TATTAATTTTGTTTTATTATTTATTTATTATTAT
1 TATTAATTTTATTTTATTATTTATTTATTATTAT
5981895 AAATAAATAA
Statistics
Matches: 89, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
63 39 0.44
64 10 0.11
65 1 0.01
66 7 0.08
67 32 0.36
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (64 bp):
TATTAATTTTATTTTATTATTTATTTATTATTATTTTATGAACATAAATAAATAAGTAAAATAA
Found at i:5981846 original size:67 final size:66
Alignment explanation
Indices: 5981729--5981894 Score: 205
Period size: 67 Copynumber: 2.5 Consensus size: 66
5981719 CAATTCCATT
* *
5981729 TTTATTATTTTTATTTATTTATTTATTTATTATTATTTTTATGAACATAAATAAATATAAAATAA
1 TTTATTTTTTTTA-TTATTTATTTATTTATTATTATTTATATGAACATAAATAAATATAAAATAA
5981794 TA
65 TA
*
5981796 TTTATTTTATTTTATTATTTATTTATTTATTATT-TTATGAATAT-AA-ATAAATAAATGTAAAA
1 TTTATTTT-TTTTATTATTTATTTATTTATTATTATT-T--ATATGAACATAAATAAATATAAAA
*
5981858 TATTA
62 TAATA
*
5981863 TTAATTTTGTTTTATTATTTATTTA-TTATTAT
1 TTTATTTT-TTTTATTATTTATTTATTTATTAT
5981895 AAATAAATAA
Statistics
Matches: 89, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
66 9 0.10
67 70 0.79
68 7 0.08
69 3 0.03
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (66 bp):
TTTATTTTTTTTATTATTTATTTATTTATTATTATTTATATGAACATAAATAAATATAAAATAAT
A
Found at i:6002676 original size:19 final size:20
Alignment explanation
Indices: 6002652--6002698 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
6002642 TTATAATGGT
*
6002652 TATATTTTA-ATATTTAAAA
1 TATATTTTATATATTCAAAA
*
6002671 TATA-TTTATATATTCAAAT
1 TATATTTTATATATTCAAAA
6002690 TATATTTTA
1 TATATTTTA
6002699 CAAATAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.17
19 16 0.67
20 4 0.17
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TATATTTTATATATTCAAAA
Found at i:6006662 original size:21 final size:23
Alignment explanation
Indices: 6006625--6006667 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
6006615 GTAAAATTTT
*
6006625 TATTTATAAATAAAATT-TAAAC
1 TATTTAGAAATAAAATTGTAAAC
6006647 TATTTAGAAA-AAAATTGTAAA
1 TATTTAGAAATAAAATTGTAAA
6006668 AAGGCTAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (23 bp):
TATTTAGAAATAAAATTGTAAAC
Found at i:6009196 original size:15 final size:15
Alignment explanation
Indices: 6009176--6009235 Score: 79
Period size: 15 Copynumber: 4.1 Consensus size: 15
6009166 AATAAACTGC
*
6009176 ATAATCTGCTCTTGA
1 ATAATCTGCTATTGA
6009191 ATAATCTGCTATTGA
1 ATAATCTGCTATTGA
*
6009206 ATAATCTGCTATAG-
1 ATAATCTGCTATTGA
*
6009220 A-AATCTGCTAGTGA
1 ATAATCTGCTATTGA
6009234 AT
1 AT
6009236 TCTCTGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
13 10 0.26
14 2 0.05
15 27 0.69
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (15 bp):
ATAATCTGCTATTGA
Found at i:6014927 original size:58 final size:58
Alignment explanation
Indices: 6014839--6014984 Score: 192
Period size: 58 Copynumber: 2.5 Consensus size: 58
6014829 ATATATTATA
* *
6014839 ATTTTTACT-AATTCATATTTTAATAATAATTATATTAAAA-AT-ATT-ATTAAATTACAT
1 ATTTTTATTAAATT-ATA-TTTAATAATAATTATATTAAAATATAATTAAATAAATTA-AT
*
6014896 ATTATTTTATTAAATTATATTTAATAATAATTATGTTAAAATATAATTAAATAAATTAAT
1 A-T-TTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATAAATTAAT
6014956 ATTTTTATTAAATTATATTTAATAATAAT
1 ATTTTTATTAAATTATATTTAATAATAAT
6014985 CATTAAAATT
Statistics
Matches: 80, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
57 1 0.01
58 49 0.61
59 12 0.15
60 10 0.12
61 8 0.10
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (58 bp):
ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATAAATTAAT
Found at i:6014935 original size:26 final size:26
Alignment explanation
Indices: 6014903--6014984 Score: 74
Period size: 32 Copynumber: 2.9 Consensus size: 26
6014893 CATATTATTT
6014903 TATTAAATTATATTTAATAATAATTA
1 TATTAAATTATATTTAATAATAATTA
* * * *
6014929 TGTTAAAATATAATTAAATAAATTAATATTTT
1 TATTAAATTAT-ATT---T-AA-TAATAATTA
6014961 TATTAAATTATATTTAATAATAAT
1 TATTAAATTATATTTAATAATAAT
6014985 CATTAAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
26 15 0.35
27 5 0.12
28 1 0.02
30 1 0.02
31 5 0.12
32 16 0.37
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (26 bp):
TATTAAATTATATTTAATAATAATTA
Found at i:6015174 original size:16 final size:16
Alignment explanation
Indices: 6015153--6015224 Score: 108
Period size: 16 Copynumber: 4.5 Consensus size: 16
6015143 TGAATTACTG
6015153 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
6015169 ATTACAGCTATATTCC
1 ATTACAGCTCTATTCC
**
6015185 ATTACAATTCTATTCC
1 ATTACAGCTCTATTCC
*
6015201 ATTACACCTCTATTCC
1 ATTACAGCTCTATTCC
6015217 ATTACAGC
1 ATTACAGC
6015225 GAACCAAACG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.29, C:0.29, G:0.04, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:6026037 original size:27 final size:28
Alignment explanation
Indices: 6025976--6026045 Score: 67
Period size: 26 Copynumber: 2.6 Consensus size: 28
6025966 AAAAAAATTG
* *
6025976 ATATTTTAAATATCAAATTGAAACAAAA
1 ATATTTTAAATACCAAAATGAAACAAAA
* *
6026004 A-A-ATTAAATACCAAAAT-AAATAAAA
1 ATATTTTAAATACCAAAATGAAACAAAA
6026029 ATATTTTAAGA-ACCAAA
1 ATATTTTAA-ATACCAAA
6026046 CTGTGAATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
25 8 0.24
26 13 0.38
27 11 0.32
28 2 0.06
ACGTcount: A:0.61, C:0.09, G:0.03, T:0.27
Consensus pattern (28 bp):
ATATTTTAAATACCAAAATGAAACAAAA
Found at i:6026123 original size:21 final size:23
Alignment explanation
Indices: 6026079--6026123 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
6026069 GAACAACTTT
6026079 TTAAATATTATAAAGTAAAGGAA
1 TTAAATATTATAAAGTAAAGGAA
* *
6026102 TTAAAT-TTA-AAATTAGAGGAA
1 TTAAATATTATAAAGTAAAGGAA
6026123 T
1 T
6026124 GTGAAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
22 3 0.15
23 6 0.30
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.33
Consensus pattern (23 bp):
TTAAATATTATAAAGTAAAGGAA
Found at i:6027599 original size:64 final size:64
Alignment explanation
Indices: 6027464--6027600 Score: 170
Period size: 64 Copynumber: 2.1 Consensus size: 64
6027454 GTTGCTTGAC
* * * * * *
6027464 GGCACAAGGGCGTGTGTCTAGGCCGTGTGCCATATAAATAAGAAACAATGGGTTACACGGCTTG
1 GGCACACGGGCATGTGTCTAGGCCATGTGCCATAAAAATAAGAAACAATGAGTTACACGGCTTA
* *
6027528 GGAACACGGGCATGTGTCTAGGCCATGTGCCATAAAAACT-AGAAACAGTGAGTTACACGG-TCT
1 GGCACACGGGCATGTGTCTAGGCCATGTGCCATAAAAA-TAAGAAACAATGAGTTACACGGCT-T
6027591 A
64 A
6027592 GGCACACGG
1 GGCACACGG
6027601 ACGTGTTCTA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
63 1 0.02
64 60 0.97
65 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (64 bp):
GGCACACGGGCATGTGTCTAGGCCATGTGCCATAAAAATAAGAAACAATGAGTTACACGGCTTA
Found at i:6030893 original size:2 final size:2
Alignment explanation
Indices: 6030886--6030912 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6030876 TTATGTTTTG
6030886 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
6030913 TTGCCATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6031354 original size:105 final size:105
Alignment explanation
Indices: 6031201--6031452 Score: 333
Period size: 105 Copynumber: 2.4 Consensus size: 105
6031191 TTCCGCATAG
* * * *
6031201 GAGATGAAATGCATGGAATGATGGCAAGAACGTAACTCTCCCATTTTGACTAAGCCCTATCAGTA
1 GAGATGAAATGCATGGAATGATGGCAAGAAAGTAACTCTCTCAATTTGACTAAGCCCTATCAATA
* * * *
6031266 ATACTATATCTTCTGATACTATTGTCGCTTCTTTACGTAA
66 ACACTATATCTCCTAATACTATTGTCGATTCTTTACGTAA
* * * **
6031306 GAGATGAAGTGCACGGAATGATGGCAAGAAAGTAATTCTCTCAATTTGACTAAGCTTTATCAATA
1 GAGATGAAATGCATGGAATGATGGCAAGAAAGTAACTCTCTCAATTTGACTAAGCCCTATCAATA
* * *
6031371 ACACTATATCTCCTAATATTATTGTCTATTCTTTACGTAG
66 ACACTATATCTCCTAATACTATTGTCGATTCTTTACGTAA
** *
6031411 GAGATGAAACACATGGAATGATAGCAAGAAAGTAACTCTCTC
1 GAGATGAAATGCATGGAATGATGGCAAGAAAGTAACTCTCTC
6031453 CGTAACACTA
Statistics
Matches: 125, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
105 125 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (105 bp):
GAGATGAAATGCATGGAATGATGGCAAGAAAGTAACTCTCTCAATTTGACTAAGCCCTATCAATA
ACACTATATCTCCTAATACTATTGTCGATTCTTTACGTAA
Found at i:6031517 original size:86 final size:86
Alignment explanation
Indices: 6031369--6031538 Score: 238
Period size: 86 Copynumber: 2.0 Consensus size: 86
6031359 GCTTTATCAA
* *
6031369 TAACACTATATCTCCTAATATTATTGTCTATTCTTTACGTAGGAGATGAAACACATGGAATGAT-
1 TAACACTATATCTCCTAACATTATTGTCTATTCTTTACGTAGGAGATGAAACACATGAAATGATG
6031433 AGCAAGAAAGTAACTCTCTCCG
66 A-CAAGAAAGTAACTCTCTCCG
* * *
6031455 TAACACTATATCTTCTAACATTATTGTTGCT-TT-TTTACGTAGGAGATGAAACGCGTGAAATGA
1 TAACACTATATCTCCTAACATTATTG-T-CTATTCTTTACGTAGGAGATGAAACACATGAAATGA
*
6031518 TGACAATAAAGTAACTCTCTC
64 TGACAAGAAAGTAACTCTCTC
6031539 AATTTAGCTA
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
86 69 0.92
87 4 0.05
88 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (86 bp):
TAACACTATATCTCCTAACATTATTGTCTATTCTTTACGTAGGAGATGAAACACATGAAATGATG
ACAAGAAAGTAACTCTCTCCG
Found at i:6032734 original size:28 final size:27
Alignment explanation
Indices: 6032687--6032740 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
6032677 GACAAAACTA
6032687 TTATATTGTTTATGTAGTTAAATAATC
1 TTATATTGTTTATGTAGTTAAATAATC
6032714 TTATACTTCGTTTAT-TAGTTAAATAAT
1 TTATA-TT-GTTTATGTAGTTAAATAAT
6032741 TAGTCCATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 5 0.20
28 14 0.56
29 6 0.24
ACGTcount: A:0.33, C:0.06, G:0.09, T:0.52
Consensus pattern (27 bp):
TTATATTGTTTATGTAGTTAAATAATC
Found at i:6038713 original size:11 final size:11
Alignment explanation
Indices: 6038697--6038726 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
6038687 AATCATGATA
6038697 ATTTCAACACC
1 ATTTCAACACC
6038708 ATTTCAACACC
1 ATTTCAACACC
6038719 ATTTCAAC
1 ATTTCAAC
6038727 TCCCGTCTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.37, C:0.33, G:0.00, T:0.30
Consensus pattern (11 bp):
ATTTCAACACC
Found at i:6041987 original size:102 final size:102
Alignment explanation
Indices: 6041811--6042016 Score: 412
Period size: 102 Copynumber: 2.0 Consensus size: 102
6041801 ATTAAGCATA
6041811 TGATTTGTGACACTGGCTTAAATGGCTATTGGCTAAATATTGGCCAATCATTAGTTACTGCATTA
1 TGATTTGTGACACTGGCTTAAATGGCTATTGGCTAAATATTGGCCAATCATTAGTTACTGCATTA
6041876 TAAAGCTGCTTACTTGTTAAGTTCTATGTTAATAGGT
66 TAAAGCTGCTTACTTGTTAAGTTCTATGTTAATAGGT
6041913 TGATTTGTGACACTGGCTTAAATGGCTATTGGCTAAATATTGGCCAATCATTAGTTACTGCATTA
1 TGATTTGTGACACTGGCTTAAATGGCTATTGGCTAAATATTGGCCAATCATTAGTTACTGCATTA
6041978 TAAAGCTGCTTACTTGTTAAGTTCTATGTTAATAGGT
66 TAAAGCTGCTTACTTGTTAAGTTCTATGTTAATAGGT
6042015 TG
1 TG
6042017 CTTCGTTAGG
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 104 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (102 bp):
TGATTTGTGACACTGGCTTAAATGGCTATTGGCTAAATATTGGCCAATCATTAGTTACTGCATTA
TAAAGCTGCTTACTTGTTAAGTTCTATGTTAATAGGT
Found at i:6050825 original size:20 final size:20
Alignment explanation
Indices: 6050783--6050826 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
6050773 AAACTTAATA
**
6050783 CAAATATTTATTTTAAAATT
1 CAAATATTTATACTAAAATT
6050803 CAAATATTTTATACTAAAA-T
1 CAAATA-TTTATACTAAAATT
6050823 CAAA
1 CAAA
6050827 ATAAACTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (20 bp):
CAAATATTTATACTAAAATT
Found at i:6064272 original size:15 final size:13
Alignment explanation
Indices: 6064238--6064288 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
6064228 TTTAATAGTT
*
6064238 ATAAAAATATTCAA
1 ATAAAAAAATT-AA
6064252 A-AAAAAAACTTTAA
1 ATAAAAAAA--TTAA
6064266 AGTAAAAAAATTAA
1 A-TAAAAAAATTAA
6064280 ATAAAAAAA
1 ATAAAAAAA
6064289 AACATAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
13 14 0.44
14 9 0.28
15 2 0.06
16 7 0.22
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.22
Consensus pattern (13 bp):
ATAAAAAAATTAA
Found at i:6072679 original size:13 final size:12
Alignment explanation
Indices: 6072651--6072702 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
6072641 AATATTGTTA
* *
6072651 TTTTTTAAAATA
1 TTTTTTATAATT
6072663 TTTTTTATAATT
1 TTTTTTATAATT
6072675 TTTTTTATAAATT
1 TTTTTTAT-AATT
* *
6072688 TTGTTTACAATT
1 TTTTTTATAATT
6072700 TTT
1 TTT
6072703 ATGATTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
12 24 0.71
13 10 0.29
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (12 bp):
TTTTTTATAATT
Found at i:6072686 original size:25 final size:24
Alignment explanation
Indices: 6072651--6072702 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
6072641 AATATTGTTA
*
6072651 TTTTTTAAAATATTT-TTTATAATT
1 TTTTTTAAAAT-TTTGTTTACAATT
6072675 TTTTTTATAAATTTTGTTTACAATT
1 TTTTTTA-AAATTTTGTTTACAATT
6072700 TTT
1 TTT
6072703 ATGATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (24 bp):
TTTTTTAAAATTTTGTTTACAATT
Found at i:6077746 original size:14 final size:16
Alignment explanation
Indices: 6077726--6077765 Score: 57
Period size: 14 Copynumber: 2.6 Consensus size: 16
6077716 TTAATTTTTA
6077726 AAAATTATAAAA-AAT
1 AAAATTATAAAATAAT
6077741 -AAATTATTAAAATAAT
1 AAAATTA-TAAAATAAT
6077757 AAAATTATA
1 AAAATTATA
6077766 TTTTTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.27
15 5 0.23
16 5 0.23
17 6 0.27
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATTATAAAATAAT
Found at i:6077761 original size:17 final size:16
Alignment explanation
Indices: 6077726--6077764 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
6077716 TTAATTTTTA
6077726 AAAATTA-TAAAAAAT
1 AAAATTATTAAAAAAT
6077741 -AAATTATTAAAATAAT
1 AAAATTATTAAAA-AAT
6077757 AAAATTAT
1 AAAATTAT
6077765 ATTTTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.29
15 5 0.24
16 3 0.14
17 7 0.33
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATTATTAAAAAAT
Found at i:6083090 original size:31 final size:31
Alignment explanation
Indices: 6083053--6083117 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
6083043 CAAGTAGCGG
6083053 AAAAAAATTAGAGTAACTATGCTTGTTTATA
1 AAAAAAATTAGAGTAACTATGCTTGTTTATA
* *
6083084 AAAAAAATTAGAGTAATTATGTTTGTTTATA
1 AAAAAAATTAGAGTAACTATGCTTGTTTATA
6083115 AAA
1 AAA
6083118 TAGCATTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.03, G:0.12, T:0.37
Consensus pattern (31 bp):
AAAAAAATTAGAGTAACTATGCTTGTTTATA
Found at i:6088564 original size:97 final size:96
Alignment explanation
Indices: 6088367--6088540 Score: 257
Period size: 97 Copynumber: 1.8 Consensus size: 96
6088357 TAACATTTTA
* * * *
6088367 ATTTTTTAAATGAAAATGATAGGTAATTAATTATTTAATTATATATGTTTATATTTTATTTATTT
1 ATTTTTAAAAAGAAAATGATAGATAATTAATTATTTAATTATATATGTTTAGA-TTTATTTATTT
*
6088432 ATTTTAATTTATATAAAACCAACTTTTTAATT
65 ATTTGAATTTATATAAAACCAACTTTTTAATT
*
6088464 ATTTTTAAAAAGAAAATGATAGATAATTAATTATTTAATTTTATATGTTTAGA-TT-TTTATTT-
1 ATTTTTAAAAAGAAAATGATAGATAATTAATTATTTAATTATATATGTTTAGATTTATTTATTTA
6088526 TTTGAATTT-TATAAA
66 TTTGAATTTATATAAA
6088541 TTAACTTTTA
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
92 6 0.08
93 8 0.11
94 7 0.10
95 2 0.03
97 48 0.68
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (96 bp):
ATTTTTAAAAAGAAAATGATAGATAATTAATTATTTAATTATATATGTTTAGATTTATTTATTTA
TTTGAATTTATATAAAACCAACTTTTTAATT
Found at i:6088856 original size:22 final size:21
Alignment explanation
Indices: 6088831--6088894 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 21
6088821 AACTCCTTAA
6088831 ACACCATTATCACAAATAAAAT
1 ACACCATTATC-CAAATAAAAT
*
6088853 ACACAATTA-CCAAATAAAA-
1 ACACCATTATCCAAATAAAAT
*
6088872 ACCACCATCATCTCAAA-AAAAT
1 A-CACCATTATC-CAAATAAAAT
6088894 A
1 A
6088895 TCAGTCATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
19 1 0.03
20 15 0.43
21 6 0.17
22 13 0.37
ACGTcount: A:0.56, C:0.25, G:0.00, T:0.19
Consensus pattern (21 bp):
ACACCATTATCCAAATAAAAT
Found at i:6107215 original size:21 final size:21
Alignment explanation
Indices: 6107186--6107225 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6107176 ATATTTTTCT
*
6107186 CTTTAAATTATTTTATTTACG
1 CTTTAAATTATATTATTTACG
*
6107207 CTTTTAATTATATTATTTA
1 CTTTAAATTATATTATTTA
6107226 TAATTATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (21 bp):
CTTTAAATTATATTATTTACG
Found at i:6116660 original size:18 final size:18
Alignment explanation
Indices: 6116637--6116674 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
6116627 TAATATAATT
6116637 TTATTC-AATTTATTTGAA
1 TTATTCGAA-TTATTTGAA
6116655 TTATTCGAATTATTTGAA
1 TTATTCGAATTATTTGAA
6116673 TT
1 TT
6116675 CGAAAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.32, C:0.05, G:0.08, T:0.55
Consensus pattern (18 bp):
TTATTCGAATTATTTGAA
Found at i:6116762 original size:23 final size:23
Alignment explanation
Indices: 6116718--6116763 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
6116708 AAAAAAAAAT
* **
6116718 TAACTCGATTTGTTTAACTCGAA
1 TAACTCGATTCGAATAACTCGAA
*
6116741 TAACTCGATTCGAATAATTCGAA
1 TAACTCGATTCGAATAACTCGAA
6116764 ATTCGAAATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (23 bp):
TAACTCGATTCGAATAACTCGAA
Found at i:6116980 original size:14 final size:14
Alignment explanation
Indices: 6116961--6116996 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
6116951 TTGTTTGACT
*
6116961 GAAAATGGTTTCCG
1 GAAAATGATTTCCG
*
6116975 GAAAATGATTTCTG
1 GAAAATGATTTCCG
6116989 GAAAATGA
1 GAAAATGA
6116997 CTTACTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (14 bp):
GAAAATGATTTCCG
Found at i:6120647 original size:24 final size:26
Alignment explanation
Indices: 6120611--6120658 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
6120601 GAAGAAATGT
6120611 AAATGTGATATATGA-A-ATTATGAG
1 AAATGTGATATATGAGAGATTATGAG
6120635 AAATGATGA-ATATGAGAGATTATG
1 AAATG-TGATATATGAGAGATTATG
6120659 CCCATGTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.52
25 4 0.19
26 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (26 bp):
AAATGTGATATATGAGAGATTATGAG
Found at i:6120750 original size:22 final size:23
Alignment explanation
Indices: 6120725--6120778 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 23
6120715 TAGCGCGCGC
6120725 TCTGTT-CAACACTGTGTGTGCT
1 TCTGTTCCAACACTGTGTGTGCT
6120747 TCTGTTTCCCCAACACTGTGTGTGCT
1 TCTG-TT--CCAACACTGTGTGTGCT
*
6120773 TTTGTT
1 TCTGTT
6120779 TTCCCAGCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 4 0.15
23 2 0.07
25 2 0.07
26 19 0.70
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.44
Consensus pattern (23 bp):
TCTGTTCCAACACTGTGTGTGCT
Found at i:6120767 original size:26 final size:26
Alignment explanation
Indices: 6120731--6120803 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
6120721 GCGCTCTGTT
6120731 CAACACTGTGTGTGCTTCTGTTTCCC
1 CAACACTGTGTGTGCTTCTGTTTCCC
* *
6120757 CAACACTGTGTGTGCTTTTGTTTTCC
1 CAACACTGTGTGTGCTTCTGTTTCCC
* * *
6120783 CAGCACT-TATGCGCTTCTGTT
1 CAACACTGTGTGTGCTTCTGTT
6120804 AAGTACTTGG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
25 11 0.27
26 30 0.73
ACGTcount: A:0.12, C:0.27, G:0.19, T:0.41
Consensus pattern (26 bp):
CAACACTGTGTGTGCTTCTGTTTCCC
Found at i:6121352 original size:5 final size:5
Alignment explanation
Indices: 6121342--6121367 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
6121332 AGGGACCTCT
6121342 CATCA CATCA CATCA CATCA CATCA C
1 CATCA CATCA CATCA CATCA CATCA C
6121368 TCTTGAAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.42, G:0.00, T:0.19
Consensus pattern (5 bp):
CATCA
Found at i:6136548 original size:2 final size:2
Alignment explanation
Indices: 6136541--6136566 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6136531 AATTAAATGG
6136541 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6136567 TAAACAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6141578 original size:20 final size:21
Alignment explanation
Indices: 6141537--6141581 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
6141527 TCTCAATAAA
6141537 AATTACATAAAAAATAAAAAT
1 AATTACATAAAAAATAAAAAT
* *
6141558 AATTACAT-AAGAATCAAAAT
1 AATTACATAAAAAATAAAAAT
6141578 AATT
1 AATT
6141582 TTTAAAGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (21 bp):
AATTACATAAAAAATAAAAAT
Found at i:6150261 original size:29 final size:29
Alignment explanation
Indices: 6150229--6150379 Score: 102
Period size: 29 Copynumber: 5.2 Consensus size: 29
6150219 TAAAGATAGG
*
6150229 ATTTTGAAAAGTTCGAGGGTAAAATGGTA
1 ATTTTGGAAAGTTCGAGGGTAAAATGGTA
* * * *
6150258 ATTTTTGATGAAA-CTGGA-GTTAAAAATAG-A
1 A-TTTTG--GAAAGTTCGAGGGT-AAAATGGTA
*
6150288 ATTTTGGAAAGTTTGAGGGTAAAATGGTA
1 ATTTTGGAAAGTTCGAGGGTAAAATGGTA
6150317 ATTTTTGGTGAAA--TCG-GGGTTAAAAAT--TA
1 A-TTTT-G-GAAAGTTCGAGGG-T-AAAATGGTA
*
6150346 ATTTTGGAAAGTTCGGGGGTAAAATGGTA
1 ATTTTGGAAAGTTCGAGGGTAAAATGGTA
6150375 ATTTT
1 ATTTT
6150380 CGGATAGTCC
Statistics
Matches: 95, Mismatches: 10, Indels: 34
0.68 0.07 0.24
Matches are distributed among these distances:
26 4 0.04
27 10 0.11
28 17 0.18
29 26 0.27
30 16 0.17
31 15 0.16
32 7 0.07
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (29 bp):
ATTTTGGAAAGTTCGAGGGTAAAATGGTA
Found at i:6150377 original size:58 final size:58
Alignment explanation
Indices: 6150168--6150379 Score: 259
Period size: 59 Copynumber: 3.6 Consensus size: 58
6150158 CTAAATATGA
* * * *
6150168 AATTTTGGAAAGTTC-ATGGGGTAAAGTGGTAATTTTTGGTGATATCAGGGTTAAAGA-T
1 AATTTTGGAAAGTTCGA--GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATT
* * * *
6150226 AGGATTTTGAAAAGTTCGAGGGTAAAATGGTAATTTTTGATGAAA-CTGGAGTTAAAAATAG
1 A--ATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTTGGTGAAATC-GGGGTTAAAAAT-T
*
6150287 AATTTTGGAAAGTTTGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATT
1 AATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATT
*
6150345 AATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTT
1 AATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTT
6150380 CGGATAGTCC
Statistics
Matches: 132, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
58 35 0.27
59 81 0.61
60 14 0.11
61 2 0.02
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.35
Consensus pattern (58 bp):
AATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATT
Found at i:6150697 original size:162 final size:162
Alignment explanation
Indices: 6150453--6150798 Score: 568
Period size: 162 Copynumber: 2.1 Consensus size: 162
6150443 GGCATCCAGA
* ** * *
6150453 AGTCAAAGGACGAATTTGTAAATCTTGAAAAATTCTTGGGCCAATTTTGTAATTAAGCAGAAGTT
1 AGTCAAAGGACTAATTTAAAAATCTTCAAAAATTCTTGGGCCAATTTTGTAATTAAGCAAAAGTT
* * * * *
6150518 GATTTTAGGATTAAATTAAAACAAATTAAAAATGATAGGGACTATATACATAAATAAATCAAAAA
66 GATTTGAGGAGTAAATTAAAACAAATTAAAAATGACAGGGACTAGATACATAAATAAACCAAAAA
6150583 GTGACACGTGGCAGCCTCTGGTGCAGTCAAAC
131 GTGACACGTGGCAGCCTCTGGTGCAGTCAAAC
*
6150615 AGTCAAAGGACTAATTTAAAAATC-TCAAAAGATTCTTGGGTCAATTTTGTAATTAAGCAAAAGT
1 AGTCAAAGGACTAATTTAAAAATCTTCAAAA-ATTCTTGGGCCAATTTTGTAATTAAGCAAAAGT
6150679 TGATTTGAGGAGTAAATTAAAACAAATTAAAAATGACAGGGACTAGATACATAAATAAACCAAAA
65 TGATTTGAGGAGTAAATTAAAACAAATTAAAAATGACAGGGACTAGATACATAAATAAACCAAAA
6150744 AGTGACACGTGGCAGCCTCTGGTGCAGTCAAAC
130 AGTGACACGTGGCAGCCTCTGGTGCAGTCAAAC
*
6150777 AGTCAAAGGACTAAATTAAAAA
1 AGTCAAAGGACTAATTTAAAAA
6150799 CCAATTAAAA
Statistics
Matches: 171, Mismatches: 12, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
161 5 0.03
162 166 0.97
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26
Consensus pattern (162 bp):
AGTCAAAGGACTAATTTAAAAATCTTCAAAAATTCTTGGGCCAATTTTGTAATTAAGCAAAAGTT
GATTTGAGGAGTAAATTAAAACAAATTAAAAATGACAGGGACTAGATACATAAATAAACCAAAAA
GTGACACGTGGCAGCCTCTGGTGCAGTCAAAC
Found at i:6151269 original size:16 final size:14
Alignment explanation
Indices: 6151245--6151283 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
6151235 AGTTCGTCCC
6151245 TTCTTCTTTCTCTT
1 TTCTTCTTTCTCTT
*
6151259 TCTCGTTCTTTTTCTT
1 T-TC-TTCTTTCTCTT
6151275 TTCTTCTTT
1 TTCTTCTTT
6151284 TATTTTTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 7 0.32
15 4 0.18
16 11 0.50
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.72
Consensus pattern (14 bp):
TTCTTCTTTCTCTT
Found at i:6151611 original size:16 final size:16
Alignment explanation
Indices: 6151582--6151624 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
6151572 TTTTTTTATT
6151582 TATTATTAATATTATTAG
1 TATTATT-A-ATTATTAG
* *
6151600 TGTTATTAATTATTAT
1 TATTATTAATTATTAG
6151616 TATTATTAA
1 TATTATTAA
6151625 AAAGAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 15 0.68
17 1 0.05
18 6 0.27
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (16 bp):
TATTATTAATTATTAG
Found at i:6151642 original size:3 final size:3
Alignment explanation
Indices: 6151581--6151623 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
6151571 CTTTTTTTAT
* * *
6151581 TTA TTA TTA ATA TTA TTA GTG TTA TTAA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
6151624 AAAAGAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:6152428 original size:17 final size:16
Alignment explanation
Indices: 6152395--6152463 Score: 75
Period size: 17 Copynumber: 4.1 Consensus size: 16
6152385 ATATTTAAAC
*
6152395 ATTTAAATTCAAAATAA
1 ATTTAAATT-TAAATAA
*
6152412 ATTCAAATTTAACATAA
1 ATTTAAATTTAA-ATAA
*
6152429 ATTTAAATTCTAAATGA
1 ATTTAAATT-TAAATAA
6152446 ATTTAAATTTAAAATAA
1 ATTTAAATTT-AAATAA
6152463 A
1 A
6152464 CTAAGGTTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
16 3 0.07
17 38 0.86
18 3 0.07
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.38
Consensus pattern (16 bp):
ATTTAAATTTAAATAA
Found at i:6152434 original size:34 final size:34
Alignment explanation
Indices: 6152395--6152463 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
6152385 ATATTTAAAC
*
6152395 ATTTAAATTCAAAATAAATTCAAATTTAACATAA
1 ATTTAAATTCAAAATAAATTCAAATTTAAAATAA
* * *
6152429 ATTTAAATTCTAAATGAATTTAAATTTAAAATAA
1 ATTTAAATTCAAAATAAATTCAAATTTAAAATAA
6152463 A
1 A
6152464 CTAAGGTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.38
Consensus pattern (34 bp):
ATTTAAATTCAAAATAAATTCAAATTTAAAATAA
Found at i:6157275 original size:25 final size:25
Alignment explanation
Indices: 6157239--6157292 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
6157229 TAGGGGTGCT
6157239 TATTTGGAATTAATAGACCTTTGTC
1 TATTTGGAATTAATAGACCTTTGTC
*
6157264 TATTTGGGATTAATAGACCTTTGTC
1 TATTTGGAATTAATAGACCTTTGTC
6157289 TATT
1 TATT
6157293 GCTAGGAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.46
Consensus pattern (25 bp):
TATTTGGAATTAATAGACCTTTGTC
Found at i:6166667 original size:28 final size:28
Alignment explanation
Indices: 6166636--6166694 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
6166626 AAAAATATGG
*
6166636 TTATTCAAATT-GAATTGAATTTTATTTT
1 TTATTCAAATTAGAATT-AATTTTAATTT
* * *
6166664 TTATTTAATTTATAATTAATTTTAATTT
1 TTATTCAAATTAGAATTAATTTTAATTT
6166692 TTA
1 TTA
6166695 ATAATGTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 22 0.85
29 4 0.15
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (28 bp):
TTATTCAAATTAGAATTAATTTTAATTT
Found at i:6169210 original size:21 final size:22
Alignment explanation
Indices: 6169160--6169208 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
6169150 CAGGAAAACT
6169160 ATTTTAAATGAAAAATAAATAA
1 ATTTTAAATGAAAAATAAATAA
*
6169182 ATTCTTAAATGAAACAA-ATATAA
1 ATT-TTAAATGAAA-AATAAATAA
6169205 ATTT
1 ATTT
6169209 AAGAATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 4 0.17
23 18 0.75
24 2 0.08
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (22 bp):
ATTTTAAATGAAAAATAAATAA
Found at i:6173001 original size:20 final size:21
Alignment explanation
Indices: 6172978--6173017 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
6172968 GATAATACAT
6172978 AATAAAATAT-TTTAATTAAA
1 AATAAAATATATTTAATTAAA
*
6172998 AATAGAATATATTTAATTAA
1 AATAAAATATATTTAATTAA
6173018 TTCATTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (21 bp):
AATAAAATATATTTAATTAAA
Found at i:6182524 original size:7 final size:7
Alignment explanation
Indices: 6182512--6182539 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
6182502 GATAAGCAAT
6182512 GCCAAGG
1 GCCAAGG
6182519 GCCAAGG
1 GCCAAGG
6182526 GCCAAGG
1 GCCAAGG
6182533 GCCAAGG
1 GCCAAGG
6182540 TTGAAGGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.43, T:0.00
Consensus pattern (7 bp):
GCCAAGG
Found at i:6188110 original size:6 final size:6
Alignment explanation
Indices: 6188099--6188136 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
6188089 GCAATCCAAC
6188099 ATCAAA ATCAAA ATCAAA ATCAAA ATCAAA ATCAAA AT
1 ATCAAA ATCAAA ATCAAA ATCAAA ATCAAA ATCAAA AT
6188137 ATTCCACCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.18
Consensus pattern (6 bp):
ATCAAA
Found at i:6189351 original size:63 final size:61
Alignment explanation
Indices: 6189254--6189379 Score: 182
Period size: 63 Copynumber: 2.0 Consensus size: 61
6189244 TATTGAAAAG
* * * *
6189254 ATCATTTTTGCAGACAAAACTATAACACAAATATAACACT-TCTGCATGCTTGTATATATGA
1 ATCATTTTTGCAGACAAAACCATAACACAAATATAA-AATGGCTGAATGCTTGTATATATGA
6189315 ATCATTTTTGCAGACAAAAAACCATAACACAAATATAAAATGGCTGAATGCTTGTATATATGA
1 ATCATTTTTGCAGAC--AAAACCATAACACAAATATAAAATGGCTGAATGCTTGTATATATGA
6189378 AT
1 AT
6189380 GAAAAAAACA
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
61 15 0.26
62 2 0.03
63 41 0.71
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (61 bp):
ATCATTTTTGCAGACAAAACCATAACACAAATATAAAATGGCTGAATGCTTGTATATATGA
Found at i:6196023 original size:31 final size:32
Alignment explanation
Indices: 6195988--6196048 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
6195978 AACGTAAGAA
6195988 AGTATCTCGAT-AACTAAAATTTAGATCTTAG
1 AGTATCTCGATGAACTAAAATTTAGATCTTAG
** *
6196019 AGTATCTCGATGATTTAAATTTTAGATCTT
1 AGTATCTCGATGAACTAAAATTTAGATCTT
6196049 CATAATATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.41
Consensus pattern (32 bp):
AGTATCTCGATGAACTAAAATTTAGATCTTAG
Found at i:6196650 original size:24 final size:24
Alignment explanation
Indices: 6196629--6196681 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
6196619 ATATTATTTT
6196629 TATAAAAGATTTAATATTTATTAG
1 TATAAAAGATTTAATATTTATTAG
* * *
6196653 TATAATATATTTTATATTTATTAG
1 TATAAAAGATTTAATATTTATTAG
*
6196677 CATAA
1 TATAA
6196682 TTTATTTGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (24 bp):
TATAAAAGATTTAATATTTATTAG
Found at i:6196682 original size:24 final size:24
Alignment explanation
Indices: 6196637--6196688 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
6196627 TTTATAAAAG
*
6196637 ATTTAATATTTATTAGTATAATAT
1 ATTTAATATTTATTAGCATAATAT
* *
6196661 ATTTTATATTTATTAGCATAATTT
1 ATTTAATATTTATTAGCATAATAT
6196685 ATTT
1 ATTT
6196689 GGCTTTCGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (24 bp):
ATTTAATATTTATTAGCATAATAT
Found at i:6198845 original size:37 final size:35
Alignment explanation
Indices: 6198796--6198866 Score: 99
Period size: 37 Copynumber: 2.0 Consensus size: 35
6198786 ATTCCAAAAA
6198796 TAATATTATTTTAATAGT-TTAATATTAAATTTAATT
1 TAATATTATTTTAATAGTATT-ATATT-AATTTAATT
*
6198832 TAATACTTATTTTAATAGTATTTTATTAATTTAAT
1 TAATA-TTATTTTAATAGTATTATATTAATTTAAT
6198867 ATTAGAGTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 13 0.41
37 17 0.53
38 2 0.06
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.56
Consensus pattern (35 bp):
TAATATTATTTTAATAGTATTATATTAATTTAATT
Found at i:6198869 original size:11 final size:11
Alignment explanation
Indices: 6198796--6198870 Score: 50
Period size: 12 Copynumber: 6.7 Consensus size: 11
6198786 ATTCCAAAAA
*
6198796 TAATATTATTT
1 TAATATTAATT
6198807 TAATAGTTTAATAT
1 TAATA--TTAAT-T
6198821 TAA-ATTTAATT
1 TAATA-TTAATT
*
6198832 TAATACTTATTT
1 TAATA-TTAATT
*
6198844 TAATAGT-ATT
1 TAATATTAATT
6198854 T--TATTAATT
1 TAATATTAATT
6198863 TAATATTA
1 TAATATTA
6198871 GAGTGGTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 3 0.06
11 15 0.29
12 17 0.33
13 5 0.10
14 4 0.08
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (11 bp):
TAATATTAATT
Found at i:6202548 original size:16 final size:16
Alignment explanation
Indices: 6202509--6202552 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
6202499 ATTTATAAAT
6202509 ATTTTTTATAAATTTTA
1 ATTTTTT-TAAATTTTA
** *
6202526 ACATTTTTGAATTTTA
1 ATTTTTTTAAATTTTA
6202542 ATTTTTTTAAA
1 ATTTTTTTAAA
6202553 AATGTTTTAA
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (16 bp):
ATTTTTTTAAATTTTA
Found at i:6205422 original size:27 final size:26
Alignment explanation
Indices: 6205377--6205431 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
6205367 AATATGTCAT
*
6205377 TATATAAAAAAATTCAATAAATAAAAA
1 TATATAAAAAAATTAAATAAA-AAAAA
** *
6205404 TATATAAAATTATTAAATATAAAAAA
1 TATATAAAAAAATTAAATAAAAAAAA
6205430 TA
1 TA
6205432 AAGTAAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (26 bp):
TATATAAAAAAATTAAATAAAAAAAA
Found at i:6207650 original size:115 final size:115
Alignment explanation
Indices: 6207415--6207643 Score: 386
Period size: 115 Copynumber: 2.0 Consensus size: 115
6207405 ACTTTGAATG
* * **
6207415 TTAATAGAGAGTTCTTAATCACTTGCACATTAAAAATGTTGGCTTCAATATCAATTTTCAATATT
1 TTAATAGAGAATTCTTAATCACTTGCACATTAAAAATATTAACTTCAATATCAATTTTCAATATT
6207480 ATAATTCTTTCGTACTCACCGTAACTGATTATTTAATATTATAATTTTTA
66 ATAATTCTTTCGTACTCACCGTAACTGATTATTTAATATTATAATTTTTA
* * *
6207530 TTAATAGAGAATTTTTAATCACTTGCACATTAAAAATATTAATTTCAATATCAATTTTTAATATT
1 TTAATAGAGAATTCTTAATCACTTGCACATTAAAAATATTAACTTCAATATCAATTTTCAATATT
*
6207595 ATAATTGTTTCGTACTCACCGTAACTGATTATTTAATATTATAATTTTT
66 ATAATTCTTTCGTACTCACCGTAACTGATTATTTAATATTATAATTTTT
6207644 TATAATATTC
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
115 106 1.00
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.45
Consensus pattern (115 bp):
TTAATAGAGAATTCTTAATCACTTGCACATTAAAAATATTAACTTCAATATCAATTTTCAATATT
ATAATTCTTTCGTACTCACCGTAACTGATTATTTAATATTATAATTTTTA
Found at i:6208458 original size:5 final size:5
Alignment explanation
Indices: 6208448--6208479 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
6208438 ACAATAACCC
6208448 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT AT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT AT
6208480 TATCTATCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (5 bp):
ATGAT
Found at i:6218677 original size:14 final size:15
Alignment explanation
Indices: 6218633--6218677 Score: 60
Period size: 14 Copynumber: 3.2 Consensus size: 15
6218623 ATAATATTTA
*
6218633 AATAATAACAAT-GA
1 AATAATAACAATAGT
6218647 AATAATAACAATA-T
1 AATAATAACAATAGT
6218661 AATAATAA-AATAGT
1 AATAATAACAATAGT
6218675 AAT
1 AAT
6218678 TTATGTTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 4 0.14
14 24 0.86
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.27
Consensus pattern (15 bp):
AATAATAACAATAGT
Found at i:6223011 original size:39 final size:37
Alignment explanation
Indices: 6222951--6223044 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
6222941 AGGGTTTATA
* * *
6222951 ATTTCTACACCATAAATCCTAAACAACTTAAGATTCACG
1 ATTTCTAAACCCTAAACCCTAAACAACTT-AGATTCA-G
* * * *
6222990 ATTTCTAAACCCTAAACCCTAAATAAGTTAGGTTTAG
1 ATTTCTAAACCCTAAACCCTAAACAACTTAGATTCAG
6223027 AGTTTCTAAACCCTAAAC
1 A-TTTCTAAACCCTAAAC
6223045 AAGTTAAGGC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
37 2 0.04
38 21 0.45
39 24 0.51
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.30
Consensus pattern (37 bp):
ATTTCTAAACCCTAAACCCTAAACAACTTAGATTCAG
Found at i:6223039 original size:31 final size:32
Alignment explanation
Indices: 6223001--6223076 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
6222991 TTTCTAAACC
*
6223001 CTAAACCCTAAATAAGTT-AGGTTTA-GAGTTT
1 CTAAACCCTAAATAAGTTAAGGCTTATG-GTTT
*
6223032 CTAAACCCTAAACAAGTTAAGGCTTATGGTTT
1 CTAAACCCTAAATAAGTTAAGGCTTATGGTTT
*
6223064 CTAAATCCTAAAT
1 CTAAACCCTAAAT
6223077 CCTAACAAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
31 17 0.44
32 21 0.54
33 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (32 bp):
CTAAACCCTAAATAAGTTAAGGCTTATGGTTT
Found at i:6224304 original size:12 final size:12
Alignment explanation
Indices: 6224278--6224310 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
6224268 AAGTTGATGA
*
6224278 ATGCTCTCC-TC
1 ATGCCCTCCGTC
6224289 ATGCCCTCCGTC
1 ATGCCCTCCGTC
6224301 ATGCCCTCCG
1 ATGCCCTCCG
6224311 CCTCACTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.09, C:0.48, G:0.15, T:0.27
Consensus pattern (12 bp):
ATGCCCTCCGTC
Found at i:6227391 original size:25 final size:24
Alignment explanation
Indices: 6227357--6227403 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
6227347 AAAGGAGCCT
6227357 AACTTAATTTTTAATTAAGTTAAAA
1 AACTTAATTTTTAATTAA-TTAAAA
6227382 AACTTAATTTTTAATTAATTAA
1 AACTTAATTTTTAATTAATTAA
6227404 TATTTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (24 bp):
AACTTAATTTTTAATTAATTAAAA
Found at i:6239605 original size:243 final size:239
Alignment explanation
Indices: 6239153--6240107 Score: 1214
Period size: 243 Copynumber: 4.0 Consensus size: 239
6239143 AAATATATAT
* * * * *
6239153 ATATCGGATCAAGTTAGGTATAGATTTATTTTTTTTATTAGATTCAAAATAAATAAAT-AA--AC
1 ATATCAGATTAAGTTAGGTATAGATTTA-ATTTTTTATTAGATTCAAAACAAATAAATAAATTAA
* ** * * * * *
6239215 ATGAAAGTTCA-ATCAAAATTAAAATAAACTAAGAATTTATCAAATTAAATTCGACCAGCAATAG
65 ATGAAAG-TCAGATCAATATCGAAATAAATTAAGAATATATCAAATCAAAATCGACCAGCAATAA
* * * *
6239279 CTGTTTGTTTCTTTACATTGTCATCTCTATTTGATCATTTAATTTGTATGTTCAATTAATTATCG
129 CTGCTCGTTTCGTTACATTGTCATCTCTAATTGATCATTTAATTTGTATGTTCAATTAATTATCG
* *
6239344 AATGACCAAGCGTACATTTTTTTCACTTCTCAATCTAAAATTATGAT
194 AATGACCAAGTGTACA-TTTTTTCACTTCTCAATCTAAAATTATGAC
* * *
6239391 GTATCAGATTAAGTTAGTTATAAATTTAATTTTTTATTAGATTCAAAACAAATAAATAAAATTTA
1 ATATCAGATTAAGTTAGGTATAGATTTAATTTTTTATTAGATTCAAAACAAATAAAT-AAA-TTA
* *
6239456 AATTGAAAGTCAGATCAAGATCGAAATAAATTAAGAATATATCAAATCAAAATCGACTAGCAATA
64 AA-TGAAAGTCAGATCAATATCGAAATAAATTAAGAATATATCAAATCAAAATCGACCAGCAATA
* * *
6239521 ACTGCTCGTTTCATTACATTGCCATCTCTAATTCATCATTTAATTTGTATGTTCAATTAATTATC
128 ACTGCTCGTTTCGTTACATTGTCATCTCTAATTGATCATTTAATTTGTATGTTCAATTAATTATC
* *
6239586 GAATGATCAAGTGTACATTTTTTTCACTTTTCAATCT-AAATTGATGAC
193 GAATGACCAAGTGTACA-TTTTTTCACTTCTCAATCTAAAATT-ATGAC
*
6239634 ATATCAGATTAAGTTAAGTATAGATTTAATTTTTTAATTAGATTCAAAAC----AAATAAATTAA
1 ATATCAGATTAAGTTAGGTATAGATTTAATTTTTT-ATTAGATTCAAAACAAATAAATAAATTAA
*
6239695 CATGAAAGTTAGATCAATATCGAAATAAATTAAGAATATATCAAATCAAAATCGATCC-GCAATA
65 -ATGAAAGTCAGATCAATATCGAAATAAATTAAGAATATATCAAATCAAAATCGA-CCAGCAATA
*
6239759 ACTGCTCGTTTCGTTACATTGTCATCTCTAATTGATTATTTAATTTGTATGTTCAATTAATTATC
128 ACTGCTCGTTTCGTTACATTGTCATCTCTAATTGATCATTTAATTTGTATGTTCAATTAATTATC
* * *
6239824 GAATGATCAAGTGTATATTTTTTCACTTCTCAATCTAAATTTATGAC
193 GAATGACCAAGTGTACATTTTTTCACTTCTCAATCTAAAATTATGAC
* **
6239871 ATAT-AGGATTAAGTTAGGTATAGATTTAATTTGTT-TTAGATTCAAAATGAATAAATTAACATT
1 ATATCA-GATTAAGTTAGGTATAGATTTAATTTTTTATTAGATTCAAAACAAATAAA-TAA-A-T
* * * * * *
6239934 TAAATTGAAAGTCAAATCAATATCGAAATAATTTAAGAATATATCAAATTAAATTTGACCAGTAA
62 TAAA-TGAAAGTCAGATCAATATCGAAATAAATTAAGAATATATCAAATCAAAATCGACCAGCAA
* * *
6239999 TAACTGCTCCTTTCGTTACATTGTCATCTCTAATTGATAATTTAATTTGTATGTTCAATTAATTT
126 TAACTGCTCGTTTCGTTACATTGTCATCTCTAATTGATCATTTAATTTGTATGTTCAATTAATTA
* * *
6240064 TCGATTGACCACATGTGTACATATTTTCACTTCTCAATTTAAAA
191 TCGAATGACCA-A-GTGTACATTTTTTCACTTCTCAATCTAAAA
6240108 ATTAATCTTT
Statistics
Matches: 633, Mismatches: 60, Indels: 42
0.86 0.08 0.06
Matches are distributed among these distances:
235 12 0.02
236 1 0.00
237 81 0.13
238 165 0.26
239 10 0.02
240 7 0.01
241 4 0.01
242 135 0.21
243 178 0.28
244 40 0.06
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (239 bp):
ATATCAGATTAAGTTAGGTATAGATTTAATTTTTTATTAGATTCAAAACAAATAAATAAATTAAA
TGAAAGTCAGATCAATATCGAAATAAATTAAGAATATATCAAATCAAAATCGACCAGCAATAACT
GCTCGTTTCGTTACATTGTCATCTCTAATTGATCATTTAATTTGTATGTTCAATTAATTATCGAA
TGACCAAGTGTACATTTTTTCACTTCTCAATCTAAAATTATGAC
Found at i:6247293 original size:3 final size:3
Alignment explanation
Indices: 6247285--6247313 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
6247275 AAGAATGAAG
6247285 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
6247314 TACACCTGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:6247821 original size:1 final size:1
Alignment explanation
Indices: 6247815--6247839 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
6247805 GGAAGAAATT
6247815 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
6247840 AAAGGGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Done.