Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 26 of 135
Found at i:10517677 original size:30 final size:30
Alignment explanation
Indices: 10517641--10517996 Score: 455
Period size: 30 Copynumber: 11.9 Consensus size: 30
10517631 AAATTGTCCA
* *
10517641 AAAATTATATTTTGACCCCAAAACTTTTCT
1 AAAATTACATTTTGACCCCAAAACTTTTCC
**
10517671 AAAATTACATTTTGACCCCAAAACTTTTTT
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* * *
10517701 AAAATTACCTTTTAACCCTAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
10517731 AAAATTACATTTTGACCCTAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* * *
10517761 AAAATTACATTTTGAACCTAAAACTTTTCT
1 AAAATTACATTTTGACCCCAAAACTTTTCC
10517791 AAAATTACATTTTGACCCCAAAAACTTTTCC
1 AAAATTACATTTTGACCCC-AAAACTTTTCC
*
10517822 AAAATTACATTTTGACCCCGAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* **
10517852 AAAATTACATTTTAACCCCAAAACTTTTTT
1 AAAATTACATTTTGACCCCAAAACTTTTCC
** * *
10517882 GTAATTGCATTTTGACCTCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* *
10517912 AAAATTACATTTTGACCCTAAAACTTTTCT
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* * *
10517942 AAAATTATATTTTAACCCCAAAAC-TTTCA
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
10517971 AAAATTACCATTTT-ACCCCCAAACTT
1 AAAATTA-CATTTTGACCCCAAAACTT
10517997 ACCTAAATCC
Statistics
Matches: 285, Mismatches: 38, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
29 20 0.07
30 236 0.83
31 29 0.10
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCAAAACTTTTCC
Found at i:10518032 original size:59 final size:57
Alignment explanation
Indices: 10517969--10518165 Score: 189
Period size: 59 Copynumber: 3.4 Consensus size: 57
10517959 CCAAAACTTT
* *
10517969 CAAAAATTACCATTTTACCCCCAAACTTACCTAAATCCCATTTTTAATCCCGATTTCAC
1 CAAAAATTACCATTTTACCCCCAAACTTTCC-AAATTCCATTTTTAA-CCCGATTTCAC
* * * * * * * * * **
10518028 CAAAACTTACCGTTTTGCCTCCGAACTTTCCAAAATTTCATTTTTGACCTTGTTTTTGC
1 CAAAAATTACCATTTTACCCCCAAACTTTCC-AAATTCCATTTTTAACC-CGATTTCAC
* * *
10518087 CAAAATTTACCATTTTATTCCCCAAACTTTCCAAATTCCATTTTTAGCCCCGATTTCA-
1 CAAAAATTACCATTTTA-CCCCCAAACTTTCCAAATTCCATTTTTA-ACCCGATTTCAC
10518145 CAAAAATTACCATTTTACCCC
1 CAAAAATTACCATTTTACCCC
10518166 TAAAAACCCA
Statistics
Matches: 106, Mismatches: 29, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
57 3 0.03
58 18 0.17
59 72 0.68
60 13 0.12
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.37
Consensus pattern (57 bp):
CAAAAATTACCATTTTACCCCCAAACTTTCCAAATTCCATTTTTAACCCGATTTCAC
Found at i:10519134 original size:18 final size:18
Alignment explanation
Indices: 10519111--10519155 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
10519101 TAAATAATTA
10519111 TAAAAATATAATATAATC
1 TAAAAATATAATATAATC
10519129 TAAAAATATAATATAATC
1 TAAAAATATAATATAATC
10519147 TAAAAATAT
1 TAAAAATAT
10519156 GTCAATTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAAATATAATATAATC
Found at i:10530205 original size:11 final size:11
Alignment explanation
Indices: 10530173--10530213 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
10530163 AAAAACCCAT
10530173 AAAAATTATAA
1 AAAAATTATAA
10530184 ACAAAATTTATAA
1 A-AAAA-TTATAA
*
10530197 AAAAATTATTA
1 AAAAATTATAA
10530208 AAAAAT
1 AAAAAT
10530214 AACAATATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 12 0.44
12 8 0.30
13 7 0.26
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:10531228 original size:23 final size:24
Alignment explanation
Indices: 10531202--10531247 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
10531192 AAATTATAAA
*
10531202 ATATAATA-CAGTAAAATAAAAAC
1 ATATAATAGCAATAAAATAAAAAC
* *
10531225 ATATATTAGTAATAAAATAAAAA
1 ATATAATAGCAATAAAATAAAAA
10531248 AATTGAGGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.26
Consensus pattern (24 bp):
ATATAATAGCAATAAAATAAAAAC
Found at i:10531273 original size:11 final size:11
Alignment explanation
Indices: 10531257--10531284 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
10531247 AAATTGAGGC
10531257 CTTTTTCTTTT
1 CTTTTTCTTTT
10531268 CTTTTTCTTTT
1 CTTTTTCTTTT
10531279 CTTTTT
1 CTTTTT
10531285 TTTGTGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
CTTTTTCTTTT
Found at i:10533004 original size:97 final size:97
Alignment explanation
Indices: 10532832--10533014 Score: 296
Period size: 97 Copynumber: 1.9 Consensus size: 97
10532822 CTTGAAAAAA
* *
10532832 GGTATTCGATTATCCCGATTTGAAGAAAAGTCGTGCCTAGTAAGTTAAGGCACAAATTTTCAAAA
1 GGTATTCGATTATCCCGATTTGAAGAAAAATCGTGCCTAGTAAGTTAAAGCACAAATTTTCAAAA
*
10532897 CCAGAGATAAAGAAACATTGCCTCGTTTTAAG
66 CCAGAAATAAAGAAACATTGCCTCGTTTTAAG
10532929 GGTATTCGATTATCCC-AGTTTGAAGAAAAATCGTGCCTAGTAAGTTAAAGCACAAATTTTCAAA
1 GGTATTCGATTATCCCGA-TTTGAAGAAAAATCGTGCCTAGTAAGTTAAAGCACAAATTTTCAAA
* * *
10532993 ACCCGAAATAAAGGAATATTGC
65 ACCAGAAATAAAGAAACATTGC
10533015 ATTGATTTTA
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 1 0.01
97 78 0.99
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (97 bp):
GGTATTCGATTATCCCGATTTGAAGAAAAATCGTGCCTAGTAAGTTAAAGCACAAATTTTCAAAA
CCAGAAATAAAGAAACATTGCCTCGTTTTAAG
Found at i:10533362 original size:29 final size:29
Alignment explanation
Indices: 10533291--10533380 Score: 103
Period size: 29 Copynumber: 3.1 Consensus size: 29
10533281 GTTTTAGGGT
* * *
10533291 AAAATGTCATTTTAGGAAGATTAGGGGTA
1 AAAATGTGATTTTTGGAAGATTAGGGGCA
*
10533320 AAAATGTGATTTTTGGAAG-TTCGGAGGCA
1 AAAATGTGATTTTTGGAAGATTAGG-GGCA
*
10533349 AAAATGTGATTTTTGGGA-ATGTAGGGGCA
1 AAAATGTGATTTTTGGAAGAT-TAGGGGCA
10533378 AAA
1 AAA
10533381 TGGAATTTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
28 4 0.08
29 45 0.87
30 3 0.06
ACGTcount: A:0.36, C:0.04, G:0.30, T:0.30
Consensus pattern (29 bp):
AAAATGTGATTTTTGGAAGATTAGGGGCA
Found at i:10533388 original size:28 final size:29
Alignment explanation
Indices: 10533345--10533420 Score: 77
Period size: 28 Copynumber: 2.7 Consensus size: 29
10533335 GAAGTTCGGA
*
10533345 GGCAAAAATGTG-ATTTTTGGGA-ATGTAGG
1 GGCAAAAATG-GAATTTTT-AGACATGTAGG
* * *
10533374 GGC-AAAATGGAATTTCTAGACATTTGGG
1 GGCAAAAATGGAATTTTTAGACATGTAGG
10533402 GGCAAAAATGGAATTTTTA
1 GGCAAAAATGGAATTTTTA
10533421 AAAGTTCGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 3 0.08
28 19 0.49
29 17 0.44
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (29 bp):
GGCAAAAATGGAATTTTTAGACATGTAGG
Found at i:10533438 original size:29 final size:29
Alignment explanation
Indices: 10533406--10533518 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
10533396 TTTGGGGGCA
10533406 AAAATGGAATTTTT-AAAAGTTCGAGGGTC
1 AAAATGGAATTTTTGAAAAGTTCGA-GGTC
* * * *
10533435 AAAATGTAATTTTTGAAAAATTTGATGTC
1 AAAATGGAATTTTTGAAAAGTTCGAGGTC
*
10533464 AAAATGTG-ATTTTTGGAAAGTTCGAGGTC
1 AAAATG-GAATTTTTGAAAAGTTCGAGGTC
*
10533493 AAATAT-G-ATTTTTGGAAAGTTC-AGGT
1 AAA-ATGGAATTTTTGAAAAGTTCGAGGT
10533519 TCCTTTTGGA
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
27 4 0.06
28 16 0.22
29 42 0.58
30 10 0.14
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.36
Consensus pattern (29 bp):
AAAATGGAATTTTTGAAAAGTTCGAGGTC
Found at i:10533518 original size:27 final size:28
Alignment explanation
Indices: 10533421--10533518 Score: 101
Period size: 28 Copynumber: 3.4 Consensus size: 28
10533411 GGAATTTTTA
*
10533421 AAAGTTCGAGGGTCAAA-ATGTAATTTTTGA
1 AAAGTTCGA-GGTCAAATATG--ATTTTTGG
* * * *
10533451 AAAATTTGATGTCAAAATGTGATTTTTGG
1 AAAGTTCGAGGTC-AAATATGATTTTTGG
10533480 AAAGTTCGAGGTCAAATATGATTTTTGG
1 AAAGTTCGAGGTCAAATATGATTTTTGG
10533508 AAAGTTC-AGGT
1 AAAGTTCGAGGT
10533519 TCCTTTTGGA
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
27 4 0.07
28 21 0.37
29 20 0.35
30 10 0.18
31 2 0.04
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (28 bp):
AAAGTTCGAGGTCAAATATGATTTTTGG
Found at i:10535488 original size:17 final size:17
Alignment explanation
Indices: 10535466--10535504 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
10535456 TTAAATTCAA
* *
10535466 AAAATAAGTTTAAATTT
1 AAAATAAATTAAAATTT
10535483 AAAATAAATTAAAATTT
1 AAAATAAATTAAAATTT
10535500 AAAAT
1 AAAAT
10535505 TTAGAATTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (17 bp):
AAAATAAATTAAAATTT
Found at i:10540863 original size:18 final size:18
Alignment explanation
Indices: 10540840--10540874 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
10540830 TTGGCCCTCC
10540840 TAAAATAGTTATTTTATT
1 TAAAATAGTTATTTTATT
10540858 TAAAATAGTTATTTTAT
1 TAAAATAGTTATTTTAT
10540875 CATTTTAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (18 bp):
TAAAATAGTTATTTTATT
Found at i:10544459 original size:18 final size:20
Alignment explanation
Indices: 10544424--10544461 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
10544414 GAAAATAGAA
10544424 TTTATTGTTGTTAATAAATT
1 TTTATTGTTGTTAATAAATT
*
10544444 TTTATT-TT-TTATTAAATT
1 TTTATTGTTGTTAATAAATT
10544462 GTTGCTGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 2 0.12
20 6 0.35
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (20 bp):
TTTATTGTTGTTAATAAATT
Found at i:10559610 original size:26 final size:27
Alignment explanation
Indices: 10559578--10559646 Score: 68
Period size: 29 Copynumber: 2.5 Consensus size: 27
10559568 ATACATATTT
10559578 AATTATTTATATTTAA-TAATATAATA
1 AATTATTTATATTTAATTAATATAATA
* * * *
10559604 AATTATTAATACACTTAATTATTTTAATA
1 AATTATT--TATATTTAATTAATATAATA
10559633 AATTATTTAATATT
1 AATTATTT-ATATT
10559647 ACAATTTTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
26 7 0.21
27 1 0.03
28 10 0.30
29 15 0.45
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (27 bp):
AATTATTTATATTTAATTAATATAATA
Found at i:10559652 original size:29 final size:30
Alignment explanation
Indices: 10559599--10559674 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 30
10559589 TTTAATAATA
10559599 TAATAAATTA-TTAATACACTTAA-TTATTT
1 TAATAAATTATTTAATACAC-TAATTTATTT
*
10559628 TAATAAATTATTTAATATTAC-AATTTTATTT
1 TAATAAATTATTTAATA-CACTAA-TTTATTT
10559659 TAATAATATT-TTTAAT
1 TAATAA-ATTATTTAAT
10559675 TTTTAAATGA
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
29 12 0.29
30 6 0.15
31 20 0.49
32 3 0.07
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (30 bp):
TAATAAATTATTTAATACACTAATTTATTT
Found at i:10559768 original size:15 final size:15
Alignment explanation
Indices: 10559719--10559768 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
10559709 TATTTATATC
10559719 AATATTTTAATAATA
1 AATATTTTAATAATA
*
10559734 AATATATATTACAATTATA
1 AATAT-T-TT--AATAATA
10559753 AATATTTTAATAATA
1 AATATTTTAATAATA
10559768 A
1 A
10559769 TTTTTTAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 12 0.41
16 1 0.03
17 4 0.14
18 1 0.03
19 11 0.38
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:10559821 original size:19 final size:20
Alignment explanation
Indices: 10559799--10559836 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
10559789 AATATGTCAT
*
10559799 AAATTCATTCATAA-ATTTG
1 AAATTCAGTCATAATATTTG
*
10559818 AAATTTAGTCATAATATTT
1 AAATTCAGTCATAATATTT
10559837 TTATTGTAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (20 bp):
AAATTCAGTCATAATATTTG
Found at i:10560348 original size:18 final size:17
Alignment explanation
Indices: 10560325--10560360 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
10560315 TATGTATTAA
10560325 TTATTACAAAATATAATT
1 TTATTACAAAATA-AATT
*
10560343 TTATTATAAAATAAATT
1 TTATTACAAAATAAATT
10560360 T
1 T
10560361 CGATTGTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (17 bp):
TTATTACAAAATAAATT
Found at i:10571320 original size:42 final size:42
Alignment explanation
Indices: 10571230--10571345 Score: 180
Period size: 42 Copynumber: 2.8 Consensus size: 42
10571220 TAACAGACGC
* *
10571230 GCTAATTAAACTAAATTTTAATCGACATTGA-AAACAACCGT
1 GCTAACTAAACTAAATTTTAATCAACATTGAGAAACAACCGT
* **
10571271 GCTAACTAAACTAAATTTTAATCCACATTGAGAAACAACTTT
1 GCTAACTAAACTAAATTTTAATCAACATTGAGAAACAACCGT
10571313 GCTAACTAAACTAAATTTTAATCAACATTGAGA
1 GCTAACTAAACTAAATTTTAATCAACATTGAGA
10571346 GTATATACTT
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
41 29 0.42
42 40 0.58
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (42 bp):
GCTAACTAAACTAAATTTTAATCAACATTGAGAAACAACCGT
Found at i:10571936 original size:2 final size:2
Alignment explanation
Indices: 10571929--10571967 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
10571919 CAATGCATTT
10571929 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
10571968 TGAATAAAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:10585724 original size:19 final size:19
Alignment explanation
Indices: 10585697--10585735 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10585687 CATTTAAAAA
10585697 ATTTCAAA-TTATTAAATAC
1 ATTTCAAATTTA-TAAATAC
*
10585716 ATTTTAAATTTATAAATAC
1 ATTTCAAATTTATAAATAC
10585735 A
1 A
10585736 AAACCAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTTCAAATTTATAAATAC
Found at i:10598993 original size:26 final size:27
Alignment explanation
Indices: 10598964--10599022 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 27
10598954 TATTTTTTTT
10598964 AAAATTTA-TACAATTAAATCAAAATC
1 AAAATTTAGTACAATTAAATCAAAATC
*
10598990 AAAATTTATGTGTATAATTAAATCAAAATC
1 AAAATTTA---GTACAATTAAATCAAAATC
10599020 AAA
1 AAA
10599023 GTTTTAGGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 8 0.29
30 20 0.71
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.32
Consensus pattern (27 bp):
AAAATTTAGTACAATTAAATCAAAATC
Found at i:10604825 original size:19 final size:19
Alignment explanation
Indices: 10604803--10604847 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
10604793 TTATATTAGG
10604803 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
10604822 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
10604841 ATTTAAT
1 ATTTAAT
10604848 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:10608510 original size:22 final size:20
Alignment explanation
Indices: 10608476--10608527 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
10608466 CCCAATTATT
10608476 TTTATTATTTTTATTT-TTCTA
1 TTTATT-TTTTTATTTATT-TA
10608497 TCTTATTTTATTTATTTATTTA
1 T-TTATTTT-TTTATTTATTTA
10608519 TTTATTTTT
1 TTTATTTTT
10608528 ATCCAGGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
20 1 0.04
21 10 0.36
22 15 0.54
23 2 0.07
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTATTTTTTTATTTATTTA
Found at i:10610070 original size:19 final size:19
Alignment explanation
Indices: 10610048--10610092 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
10610038 TTATATTAGG
10610048 ATTTAATATTTAATATAT-T
1 ATTTAATATTTAA-ATATGT
* *
10610067 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
10610086 ATTTAAT
1 ATTTAAT
10610093 TTATATTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:10619694 original size:39 final size:39
Alignment explanation
Indices: 10619640--10619715 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
10619630 ATTATATTGT
* *
10619640 TGTTTTCG-TGTTTTTTACTGTTTTGGTTGCTTTTTTTGC
1 TGTTTTAGTTGTTTTTTACTATTTTGG-TGCTTTTTTTGC
*
10619679 TGTTTTAGTTTTTTTTTACTATTTTGGTGCTTTTTTT
1 TGTTTTAGTTGTTTTTTACTATTTTGGTGCTTTTTTT
10619716 ACTATTTTGG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 17 0.52
40 16 0.48
ACGTcount: A:0.05, C:0.08, G:0.17, T:0.70
Consensus pattern (39 bp):
TGTTTTAGTTGTTTTTTACTATTTTGGTGCTTTTTTTGC
Found at i:10619712 original size:22 final size:21
Alignment explanation
Indices: 10619686--10619804 Score: 78
Period size: 24 Copynumber: 5.3 Consensus size: 21
10619676 TGCTGTTTTA
10619686 GTTTTTTTTTACTATTTTGGT
1 GTTTTTTTTTACTATTTTGGT
*
10619707 G-CTTTTTTTACTATTTTGGT
1 GTTTTTTTTTACTATTTTGGT
* * *
10619727 GTTGTTTTTGCTATTATTTTTGTT
1 GTT-TTTTT-TTACTA-TTTTGGT
* *
10619751 GTTGTTTTTGTTGCTATTTTTGCT
1 GTT-TTTTT-TTACTA-TTTTGGT
* *
10619775 GTTATTTTTGTTTCTATTTTTGTT
1 GTT-TTTTT-TTACTA-TTTTGGT
10619799 GTTTTT
1 GTTTTT
10619805 GTTGTTGTTT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
20 19 0.23
21 1 0.01
22 5 0.06
23 7 0.09
24 50 0.61
ACGTcount: A:0.08, C:0.06, G:0.16, T:0.71
Consensus pattern (21 bp):
GTTTTTTTTTACTATTTTGGT
Found at i:10619727 original size:20 final size:20
Alignment explanation
Indices: 10619650--10619741 Score: 98
Period size: 20 Copynumber: 4.6 Consensus size: 20
10619640 TGTTTTCGTG
*
10619650 TTTTTTACTGTTTTGGTTGCT
1 TTTTTTACTATTTTGG-TGCT
* * * *
10619671 TTTTTTGCTGTTTTAGT-TT
1 TTTTTTACTATTTTGGTGCT
10619690 TTTTTTACTATTTTGGTGCT
1 TTTTTTACTATTTTGGTGCT
10619710 TTTTTTACTATTTTGGTG-T
1 TTTTTTACTATTTTGGTGCT
*
10619729 TGTTTTTGCTATT
1 T-TTTTTACTATT
10619742 ATTTTTGTTG
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
19 17 0.28
20 30 0.49
21 14 0.23
ACGTcount: A:0.08, C:0.08, G:0.16, T:0.68
Consensus pattern (20 bp):
TTTTTTACTATTTTGGTGCT
Found at i:10619735 original size:40 final size:40
Alignment explanation
Indices: 10619651--10619741 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
10619641 GTTTTCGTGT
* * * *
10619651 TTTTTACTGTTTTGGTTGCTTTTTTTGCTGTTTTAGTTTT
1 TTTTTACTATTTTGGTTGCTTTTTTTACTATTTTAGTTTG
*
10619691 TTTTTACTATTTTGG-TGCTTTTTTTACTATTTTGGTGTTG
1 TTTTTACTATTTTGGTTGCTTTTTTTACTATTTTAGT-TTG
*
10619731 TTTTTGCTATT
1 TTTTTACTATT
10619742 ATTTTTGTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
39 18 0.41
40 26 0.59
ACGTcount: A:0.08, C:0.08, G:0.16, T:0.68
Consensus pattern (40 bp):
TTTTTACTATTTTGGTTGCTTTTTTTACTATTTTAGTTTG
Found at i:10619796 original size:92 final size:94
Alignment explanation
Indices: 10619658--10619855 Score: 224
Period size: 92 Copynumber: 2.1 Consensus size: 94
10619648 TGTTTTTTAC
* *
10619658 TGTTTTGGTTGCTTTTTTTGCTGTTTTAGTTTTTTTTTACTATTTTGGTGCTTTTT-TTACTATT
1 TGTTTTGGTTGCTATTTTTGCTG-TTTAGTTTTTGTTTACTATTTTGGTG-TTTTTGTTACTATT
* * * * *
10619722 TTGGTGTTGTTTTTGCTATTATTTTTGTTGT
64 TTGCTATTATTTTTGCTACTATTTTGGTTGT
* * ** *
10619753 TGTTTTTGTTGCTATTTTTGCTG-TTA-TTTTTGTTT-CTATTTTTGTTGTTTTTGTTGTTGTTT
1 TGTTTTGGTTGCTATTTTTGCTGTTTAGTTTTTGTTTACTA-TTTTGGTGTTTTTGTTACTATTT
10619815 TGCTATTATTTTTGCTACTATTTTGGTTGT
65 TGCTATTATTTTTGCTACTATTTTGGTTGT
*
10619845 TATTTTGGTTG
1 TGTTTTGGTTG
10619856 TTTGGATGCT
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
91 8 0.09
92 55 0.63
93 3 0.03
95 21 0.24
ACGTcount: A:0.08, C:0.06, G:0.18, T:0.68
Consensus pattern (94 bp):
TGTTTTGGTTGCTATTTTTGCTGTTTAGTTTTTGTTTACTATTTTGGTGTTTTTGTTACTATTTT
GCTATTATTTTTGCTACTATTTTGGTTGT
Found at i:10619837 original size:56 final size:57
Alignment explanation
Indices: 10619743--10619858 Score: 146
Period size: 56 Copynumber: 2.1 Consensus size: 57
10619733 TTTGCTATTA
* * ** * *
10619743 TTTTTGTTGTTGTTTTTGTTGCTATTTTTGCTGTTATTTTTGTT-TCTATTTTTGTTG
1 TTTTTGTTGTTGTTTTTGCTACTATTTTTGCTACTATTTTGGTTGT-TATTTTGGTTG
*
10619800 TTTTTGTTGTTG-TTTTGCTATTATTTTTGCTACTATTTTGGTTGTTATTTTGGTTG
1 TTTTTGTTGTTGTTTTTGCTACTATTTTTGCTACTATTTTGGTTGTTATTTTGGTTG
10619856 TTT
1 TTT
10619859 GGATGCTATT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 38 0.75
57 13 0.25
ACGTcount: A:0.07, C:0.05, G:0.18, T:0.70
Consensus pattern (57 bp):
TTTTTGTTGTTGTTTTTGCTACTATTTTTGCTACTATTTTGGTTGTTATTTTGGTTG
Found at i:10619851 original size:12 final size:12
Alignment explanation
Indices: 10619720--10619857 Score: 97
Period size: 12 Copynumber: 11.8 Consensus size: 12
10619710 TTTTTTACTA
* *
10619720 TTTTGGTGTTGT
1 TTTTGTTGTTAT
* *
10619732 TTTTGCTATTAT
1 TTTTGTTGTTAT
*
10619744 TTTTGTTGTTGT
1 TTTTGTTGTTAT
*
10619756 TTTTGTTGCTAT
1 TTTTGTTGTTAT
*
10619768 TTTTGCTGTTAT
1 TTTTGTTGTTAT
10619780 TTTTGTT-TCTAT
1 TTTTGTTGT-TAT
10619792 TTTTGTTG---T
1 TTTTGTTGTTAT
*
10619801 TTTTGTTGTT-G
1 TTTTGTTGTTAT
* *
10619812 TTTTGCTATTAT
1 TTTTGTTGTTAT
* **
10619824 TTTTGCTACTAT
1 TTTTGTTGTTAT
*
10619836 TTTGGTTGTTAT
1 TTTTGTTGTTAT
*
10619848 TTTGGTTGTT
1 TTTTGTTGTT
10619858 TGGATGCTAT
Statistics
Matches: 101, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
9 9 0.09
11 9 0.09
12 83 0.82
ACGTcount: A:0.07, C:0.05, G:0.19, T:0.69
Consensus pattern (12 bp):
TTTTGTTGTTAT
Found at i:10619869 original size:44 final size:44
Alignment explanation
Indices: 10619777--10619871 Score: 102
Period size: 44 Copynumber: 2.2 Consensus size: 44
10619767 TTTTTGCTGT
* * * * * * *
10619777 TATTTTTGTTTCTATTTTTGTTGTTTTTGTTGTTGTTTTGCTAT
1 TATTTTTGCTACTATTTTGGTTGTTTTTGTGGTTGTTTGGATAC
*
10619821 TATTTTTGCTACTATTTTGGTTGTTATTT-TGGTTGTTTGGATGC
1 TATTTTTGCTACTATTTTGGTTGTT-TTTGTGGTTGTTTGGATAC
10619865 TATTTTT
1 TATTTTT
10619872 ATGCGTTTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 39 0.93
45 3 0.07
ACGTcount: A:0.09, C:0.05, G:0.18, T:0.67
Consensus pattern (44 bp):
TATTTTTGCTACTATTTTGGTTGTTTTTGTGGTTGTTTGGATAC
Found at i:10622083 original size:29 final size:29
Alignment explanation
Indices: 10622040--10622176 Score: 150
Period size: 30 Copynumber: 4.6 Consensus size: 29
10622030 AGAGAATACA
10622040 GGGTCAAAATATAATTTTGGAAAAGTTTG
1 GGGTCAAAATATAATTTTGGAAAAGTTTG
* *
10622069 GGGTAAAAATGTAATTTTAGG-AAAGTTTAG
1 GGGTCAAAATATAATTTT-GGAAAAGTTT-G
* * *
10622099 GGGTTAAAATACAATTTTAGAAAAGTTTG
1 GGGTCAAAATATAATTTTGGAAAAGTTTG
* *
10622128 GGGATCAAAATGTAATTTTGGAAAATTTTGG
1 GGG-TCAAAATATAATTTTGGAAAAGTTT-G
* *
10622159 GGGTTAAAATATGATTTT
1 GGGTCAAAATATAATTTT
10622177 CAAAGAAAAT
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
29 28 0.31
30 57 0.64
31 4 0.04
ACGTcount: A:0.38, C:0.02, G:0.24, T:0.36
Consensus pattern (29 bp):
GGGTCAAAATATAATTTTGGAAAAGTTTG
Found at i:10622115 original size:59 final size:60
Alignment explanation
Indices: 10622040--10622169 Score: 183
Period size: 60 Copynumber: 2.2 Consensus size: 60
10622030 AGAGAATACA
* * *
10622040 GGGTCAAAATATAATTTTGGAAAAGTTTGGGG-TAAAAATGTAATTTTAGG-AAAGTTTAG
1 GGGTTAAAATACAATTTTAGAAAAGTTTGGGGATAAAAATGTAATTTT-GGAAAAGTTTAG
* * *
10622099 GGGTTAAAATACAATTTTAGAAAAGTTTGGGGATCAAAATGTAATTTTGGAAAATTTTGG
1 GGGTTAAAATACAATTTTAGAAAAGTTTGGGGATAAAAATGTAATTTTGGAAAAGTTTAG
10622159 GGGTTAAAATA
1 GGGTTAAAATA
10622170 TGATTTTCAA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
59 31 0.49
60 32 0.51
ACGTcount: A:0.39, C:0.02, G:0.25, T:0.34
Consensus pattern (60 bp):
GGGTTAAAATACAATTTTAGAAAAGTTTGGGGATAAAAATGTAATTTTGGAAAAGTTTAG
Found at i:10623172 original size:23 final size:22
Alignment explanation
Indices: 10623141--10623183 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
10623131 AAGTATATTC
10623141 ATATATAATAAATAAATATTAA
1 ATATATAATAAATAAATATTAA
* *
10623163 ATATATTAATATATATATATT
1 ATATA-TAATAAATAAATATT
10623184 TGAAAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
ATATATAATAAATAAATATTAA
Found at i:10625749 original size:2 final size:2
Alignment explanation
Indices: 10625744--10625772 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10625734 TATATATATA
10625744 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
10625773 TCTTTGACGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:10639918 original size:30 final size:29
Alignment explanation
Indices: 10639877--10639936 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
10639867 ATGCTTTAAA
10639877 TTTTTTAATAATTTTTAAAAATTTTAAGTT
1 TTTTTTAATAATTTTTAAAAA-TTTAAGTT
* *
10639907 TTTTTTTATAATTTTTTAAAATTTAAGTT
1 TTTTTTAATAATTTTTAAAAATTTAAGTT
10639936 T
1 T
10639937 AAAATGAGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 9 0.32
30 19 0.68
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (29 bp):
TTTTTTAATAATTTTTAAAAATTTAAGTT
Found at i:10640121 original size:23 final size:23
Alignment explanation
Indices: 10640095--10640140 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
10640085 AATTTTGAAT
**
10640095 TTCGAATTATTCGAATCGAGTTA
1 TTCGAATTAAACGAATCGAGTTA
* *
10640118 TTCGAGTTAAACGAATTGAGTTA
1 TTCGAATTAAACGAATCGAGTTA
10640141 AATTTTTTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.37
Consensus pattern (23 bp):
TTCGAATTAAACGAATCGAGTTA
Found at i:10640405 original size:58 final size:58
Alignment explanation
Indices: 10640337--10640452 Score: 189
Period size: 58 Copynumber: 2.0 Consensus size: 58
10640327 ATCAACAAAA
* *
10640337 TAAACTCAAATATTTTTAAACCCAAATATAATTTCATTCTTCAAA-AACATTCATAAAC
1 TAAACTCAAATATTTTTAAACCCAAATATAATTTCATTCCT-AAATAACACTCATAAAC
*
10640395 TAAACTCAAATATTTTTAAACCCAAATATAATTTTATTCCTAAATAACACTCATAAAC
1 TAAACTCAAATATTTTTAAACCCAAATATAATTTCATTCCTAAATAACACTCATAAAC
10640453 AACTCCTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
57 3 0.06
58 51 0.94
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (58 bp):
TAAACTCAAATATTTTTAAACCCAAATATAATTTCATTCCTAAATAACACTCATAAAC
Found at i:10643801 original size:90 final size:87
Alignment explanation
Indices: 10643597--10643803 Score: 240
Period size: 87 Copynumber: 2.3 Consensus size: 87
10643587 AAGTTTTTAC
* * * *
10643597 TTTTTTTTGTACTCAATTGGATACTTGAACTATCAAAATGCATCAAAAGGGATCTCAAATTTTTT
1 TTTTTTTT-CACTCAATTGGATACTTGAACTATCAAAATGCATCAAAAGAGATATCAAAATTTTT
*
10643662 CAAAAAAGCAATTAAACCCTACA
65 CAAAAAACCAATTAAACCCTACA
** * *
10643685 TTTTTTCGCACTCAATTGAATACTTGAACTTTCAAAATGCATCAAAA-AGACTATCAAAATTTTT
1 TTTTTTTTCACTCAATTGGATACTTGAACTATCAAAATGCATCAAAAGAGA-TATCAAAATTTTT
*
10643749 CAAAAAAAAAACCAATT-AACCCTTA-G
65 C----AAAAAACCAATTAAACCC-TACA
10643775 TTTTTTTTCACTCAATTGGATACTTGAAC
1 TTTTTTTTCACTCAATTGGATACTTGAAC
10643804 CATCTTTAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
86 2 0.02
87 48 0.48
88 6 0.06
90 31 0.31
91 13 0.13
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.35
Consensus pattern (87 bp):
TTTTTTTTCACTCAATTGGATACTTGAACTATCAAAATGCATCAAAAGAGATATCAAAATTTTTC
AAAAAACCAATTAAACCCTACA
Found at i:10643888 original size:17 final size:17
Alignment explanation
Indices: 10643866--10643913 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
10643856 GGCACGTGGC
10643866 AAAAAATAATAAAAAAT
1 AAAAAATAATAAAAAAT
* *
10643883 AAAAAACAATAAAAATT
1 AAAAAATAATAAAAAAT
*
10643900 ATAAAAATATTAAA
1 A-AAAAATAATAAA
10643914 TTTTAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 16 0.62
18 10 0.38
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAAATAATAAAAAAT
Found at i:10643924 original size:29 final size:29
Alignment explanation
Indices: 10643892--10643964 Score: 103
Period size: 30 Copynumber: 2.5 Consensus size: 29
10643882 TAAAAAACAA
10643892 TAAAAATTATAAAAATATT-AAATTTTAAT
1 TAAAAATTATAAAAATATTCAAATTTT-AT
*
10643921 TAAAAACTATAAAAAATATTCAAATTTTAT
1 TAAAAATTAT-AAAAATATTCAAATTTTAT
*
10643951 TAAAAATTAGAAAA
1 TAAAAATTATAAAA
10643965 TTTTATAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 13 0.33
30 19 0.49
31 7 0.18
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (29 bp):
TAAAAATTATAAAAATATTCAAATTTTAT
Found at i:10643985 original size:29 final size:29
Alignment explanation
Indices: 10643952--10644048 Score: 99
Period size: 29 Copynumber: 3.3 Consensus size: 29
10643942 AAATTTTATT
*
10643952 AAAAATTAGAAAATTTTATAAAAATCGTA
1 AAAAATTATAAAATTTTATAAAAATCGTA
* * ** *
10643981 AAAAATTATAAAATATGTAGAAGTATAG-A
1 AAAAATTATAAAAT-TTTATAAAAATCGTA
*
10644010 AAAAATTATAAAATTTTAT-AAATTCGTA
1 AAAAATTATAAAATTTTATAAAAATCGTA
10644038 AGAAAATTATA
1 A-AAAATTATA
10644049 GAAAATGTAA
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
27 3 0.06
28 5 0.09
29 37 0.70
30 8 0.15
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (29 bp):
AAAAATTATAAAATTTTATAAAAATCGTA
Found at i:10644655 original size:88 final size:88
Alignment explanation
Indices: 10644503--10644666 Score: 226
Period size: 88 Copynumber: 1.9 Consensus size: 88
10644493 CAGTTCAAAT
* **
10644503 ACCCAATTGAGTGAAAAAAAAACTCAGGGGCTTAATTGCTTTTTTAAAAAAGTTTGAGGGTTTTT
1 ACCCAATTGAGTGAAAAAAAAACGCAGGGGCTTAATTGCTTTTTTAAAAAAGTTTGAGAATTTTT
**
10644568 TTATGCATTTTGAAAGTTTAAGC
66 CGATGCATTTTGAAAGTTTAAGC
*
10644591 ACCCAATTGAGTG-CAAAAAAA-GCAGGGGCTTAATTGCTTTTTTTGAAAAAA-TTTGAGAAATT
1 ACCCAATTGAGTGAAAAAAAAACGCAGGGGCTTAATTGC-TTTTTT-AAAAAAGTTTGAG-AATT
10644653 TTTCGATGCATTTT
63 TTTCGATGCATTTT
10644667 TACAGCTCAA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
86 15 0.22
87 19 0.28
88 33 0.49
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (88 bp):
ACCCAATTGAGTGAAAAAAAAACGCAGGGGCTTAATTGCTTTTTTAAAAAAGTTTGAGAATTTTT
CGATGCATTTTGAAAGTTTAAGC
Found at i:10644685 original size:88 final size:87
Alignment explanation
Indices: 10644497--10644700 Score: 223
Period size: 88 Copynumber: 2.3 Consensus size: 87
10644487 ATTTGGCAGT
* *
10644497 TCAAATACCCAATTGAGTGAAAAAAAAACTCAGGGGCTTAATTGCTTTTTTAAAAAAGTTTGAGG
1 TCAAATACCCAATTGAGTG-AAAAAAAACGCAGGGGCTTAATTGCTTTTTTAAAAAAGTTTGAGA
* ** *
10644562 GTTTTTTTATGCATTTTGAAAGT
65 ATTTTTCGATGCATTTTGAAAGC
* ** *
10644585 TTAAGCACCCAATTGAGTGCAAAAAAA-GCAGGGGCTTAATTGCTTTTTTTGAAAAAA-TTTGAG
1 TCAAATACCCAATTGAGTGAAAAAAAACGCAGGGGCTTAATTGC-TTTTTT-AAAAAAGTTTGAG
* *
10644648 AAATTTTTCGATGCATTTTTACAGC
64 -AATTTTTCGATGCATTTTGAAAGC
* *
10644673 TCAAATATCCAATTGAATGTAAAAAAAA
1 TCAAATACCCAATTGAGTG-AAAAAAAA
10644701 TAGAAACTTA
Statistics
Matches: 94, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
86 15 0.16
87 19 0.20
88 53 0.56
89 7 0.07
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.34
Consensus pattern (87 bp):
TCAAATACCCAATTGAGTGAAAAAAAACGCAGGGGCTTAATTGCTTTTTTAAAAAAGTTTGAGAA
TTTTTCGATGCATTTTGAAAGC
Found at i:10645264 original size:16 final size:19
Alignment explanation
Indices: 10645212--10645277 Score: 59
Period size: 18 Copynumber: 3.5 Consensus size: 19
10645202 TATATTTAGT
10645212 TATA-TAATAAATTATTAA
1 TATATTAATAAATTATTAA
10645230 TATAATTAATATAATTTATT-A
1 TAT-ATTAATA-AA-TTATTAA
10645251 T-T-TTAATAAATTATTTAA
1 TATATTAATAAATTA-TTAA
*
10645269 TATTTTAAT
1 TATATTAAT
10645278 TTTATTTTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
16 3 0.08
17 4 0.10
18 11 0.28
19 2 0.05
20 11 0.28
21 4 0.10
22 5 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATATTAATAAATTATTAA
Found at i:10645738 original size:12 final size:13
Alignment explanation
Indices: 10645721--10645758 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 13
10645711 ATCTTAAATC
10645721 AATTAATCGATT-
1 AATTAATCGATTA
10645733 AATTAATCGAGTTA
1 AATTAATCGA-TTA
10645747 AATTAATTCGAT
1 AATTAA-TCGAT
10645759 CAACTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 10 0.43
13 2 0.09
14 7 0.30
15 4 0.17
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (13 bp):
AATTAATCGATTA
Found at i:10654130 original size:18 final size:20
Alignment explanation
Indices: 10654090--10654143 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
10654080 TTAACAAAAA
*
10654090 TTACAAAAAAATCAAAATAAT
1 TTAC-AAAAATTCAAAATAAT
*
10654111 TT-CAAAAATTCAAACT-AT
1 TTACAAAAATTCAAAATAAT
*
10654129 TTATAAAAATTCAAA
1 TTACAAAAATTCAAA
10654144 TTTTTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 4 0.14
19 22 0.76
20 1 0.03
21 2 0.07
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (20 bp):
TTACAAAAATTCAAAATAAT
Found at i:10656341 original size:21 final size:21
Alignment explanation
Indices: 10656299--10656343 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
10656289 CATTAACATC
*
10656299 ATTAATACTTGAATATGGCTA
1 ATTAATACTTGAATATGCCTA
*
10656320 ATTAATACTTGAATATTCCTA
1 ATTAATACTTGAATATGCCTA
10656341 ATT
1 ATT
10656344 GATGAATGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42
Consensus pattern (21 bp):
ATTAATACTTGAATATGCCTA
Found at i:10659055 original size:3 final size:3
Alignment explanation
Indices: 10659047--10659088 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
10659037 TTTCATCTTT
10659047 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10659089 AAGAGTTAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10659663 original size:17 final size:18
Alignment explanation
Indices: 10659643--10659680 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
10659633 TTATAAATAT
10659643 TATAAAATATAA-AAAA-A
1 TATAAAAT-TAATAAAAGA
10659660 TATAAAATTAATAAAAGA
1 TATAAAATTAATAAAAGA
10659678 TAT
1 TAT
10659681 TTAAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 3 0.16
17 12 0.63
18 4 0.21
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (18 bp):
TATAAAATTAATAAAAGA
Found at i:10659744 original size:20 final size:20
Alignment explanation
Indices: 10659690--10659740 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
10659680 TTTAAATTTT
* *
10659690 ATAAAAACATATAAAAATTC
1 ATAAAAACTTATAAAAAATC
*
10659710 GTAAAAACTTATAAAAAATC
1 ATAAAAACTTATAAAAAATC
10659730 ATAAAAA-TTAT
1 ATAAAAACTTAT
10659741 TAAATATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (20 bp):
ATAAAAACTTATAAAAAATC
Found at i:10659859 original size:20 final size:19
Alignment explanation
Indices: 10659803--10659879 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 19
10659793 TGATTTAAAC
*
10659803 TTATAAAAATATATAAAAT
1 TTATAAAAACATATAAAAT
* * * *
10659822 TAATAAATTATATTTAAAATT
1 TTATAAA-AACATATAAAA-T
10659843 TTATAAAAACATATAAAAGT
1 TTATAAAAACATATAAAA-T
* *
10659863 TCATAAAAACTTATAAA
1 TTATAAAAACATATAAA
10659880 TAATATTTGA
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
19 6 0.13
20 33 0.72
21 7 0.15
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.36
Consensus pattern (19 bp):
TTATAAAAACATATAAAAT
Found at i:10661513 original size:8 final size:8
Alignment explanation
Indices: 10661500--10661527 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
10661490 AGACATTTAT
10661500 TTTTCAAG
1 TTTTCAAG
10661508 TTTTCAAG
1 TTTTCAAG
10661516 TTTTCAAG
1 TTTTCAAG
10661524 TTTT
1 TTTT
10661528 AGTAGACGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.57
Consensus pattern (8 bp):
TTTTCAAG
Found at i:10664103 original size:53 final size:52
Alignment explanation
Indices: 10664000--10664160 Score: 196
Period size: 53 Copynumber: 3.0 Consensus size: 52
10663990 CACTAATGGC
* * * *
10664000 CTGCATCAATTTTATCAAATATAAAAATAATTGGGGTTTAAAGTAATTGATGA
1 CTGCACCAATTTTATCAAATA-AAAAAAAATTAGGGTTTGAAGTAATTGATGA
* *
10664053 TCTGCACCAATTTTATCAAATAAAAAAAAATTAGAGTTCGAAGTAATTGATGA
1 -CTGCACCAATTTTATCAAATAAAAAAAAATTAGGGTTTGAAGTAATTGATGA
* * * * *
10664106 CTGACACTAAATTTATCAAATATAAAAAAATTAGGGTTTGAAATAATTAATGA
1 CTG-CACCAATTTTATCAAATAAAAAAAAATTAGGGTTTGAAGTAATTGATGA
10664159 CT
1 CT
10664161 AGTATCAATA
Statistics
Matches: 93, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
52 3 0.03
53 70 0.75
54 20 0.22
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (52 bp):
CTGCACCAATTTTATCAAATAAAAAAAAATTAGGGTTTGAAGTAATTGATGA
Found at i:10664193 original size:6 final size:6
Alignment explanation
Indices: 10664176--10664235 Score: 77
Period size: 6 Copynumber: 10.0 Consensus size: 6
10664166 CAATAATTCA
**
10664176 CATCACC CATCAC CATCAC CATCAC CATCAC CATCAC CATCGT CATC-C
1 CATCA-C CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC
*
10664224 CATCAC TATCAC
1 CATCAC CATCAC
10664236 TTTTTCTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
5 4 0.08
6 39 0.81
7 5 0.10
ACGTcount: A:0.30, C:0.48, G:0.02, T:0.20
Consensus pattern (6 bp):
CATCAC
Found at i:10664435 original size:21 final size:21
Alignment explanation
Indices: 10664409--10664471 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
10664399 TGTCTTATTT
*
10664409 AATTTAAATTATATTTTTTAA
1 AATTTAATTTATATTTTTTAA
10664430 AATTTAATTTAT-TTTTTTAA
1 AATTTAATTTATATTTTTTAA
* *
10664450 GA-TTGATTTATTATTTTTTAA
1 AATTTAATTTA-TATTTTTTAA
10664471 A
1 A
10664472 TATGTATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 7 0.19
20 10 0.28
21 19 0.53
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
AATTTAATTTATATTTTTTAA
Found at i:10664458 original size:19 final size:20
Alignment explanation
Indices: 10664409--10664472 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
10664399 TGTCTTATTT
*
10664409 AATTTAAATTATATTTTTTAA
1 AATTTAATTTAT-TTTTTTAA
10664430 AATTTAATTTATTTTTTTAA
1 AATTTAATTTATTTTTTTAA
* * *
10664450 GA-TTGATTTATTATTTTTTA
1 AATTTAATTTATT-TTTTTAA
10664470 AAT
1 AAT
10664473 ATGTATTTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 9 0.25
20 16 0.44
21 11 0.31
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (20 bp):
AATTTAATTTATTTTTTTAA
Found at i:10664480 original size:22 final size:21
Alignment explanation
Indices: 10664417--10664480 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
10664407 TTAATTTAAA
*
10664417 TTATATTTTTTAAA-ATTTAAT
1 TTATATTTTTTAAATATGT-AT
10664438 TTAT-TTTTTTAAGAT-TG-AT
1 TTATATTTTTTAA-ATATGTAT
10664457 TTATTATTTTTTAAATATGTAT
1 TTA-TATTTTTTAAATATGTAT
10664479 TT
1 TT
10664481 TGTAATTAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
19 5 0.14
20 11 0.31
21 16 0.44
22 4 0.11
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (21 bp):
TTATATTTTTTAAATATGTAT
Found at i:10665297 original size:18 final size:18
Alignment explanation
Indices: 10665262--10665320 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
10665252 GTTACTCTTT
*
10665262 ATTTAAATAATAAATT-A
1 ATTTAAAAAATAAATTAA
*
10665279 ATTTAAAACAATAAGTTAA
1 ATTTAAAA-AATAAATTAA
10665298 ATTTAAAAAATAGAATTTAA
1 ATTTAAAAAATA-AA-TTAA
10665318 ATT
1 ATT
10665321 AAATAAGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 7 0.20
18 11 0.31
19 10 0.29
20 7 0.20
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (18 bp):
ATTTAAAAAATAAATTAA
Found at i:10665696 original size:16 final size:15
Alignment explanation
Indices: 10665675--10665710 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
10665665 TTTTTCTAAA
10665675 ATATTAATATAAATAT
1 ATATTAATAT-AATAT
*
10665691 ATATTAATATTATAT
1 ATATTAATATAATAT
10665706 ATATT
1 ATATT
10665711 GAAAAAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATTAATATAATAT
Found at i:10665893 original size:28 final size:29
Alignment explanation
Indices: 10665847--10665903 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
10665837 AAATCTAATT
* *
10665847 TTATTATTTATTTCAAATCATTTAAATAA
1 TTATTATTTAATTAAAATCATTTAAATAA
*
10665876 TTATT-TTTAATTAAAATCATTTATATAA
1 TTATTATTTAATTAAAATCATTTAAATAA
10665904 ATAATAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 20 0.80
29 5 0.20
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (29 bp):
TTATTATTTAATTAAAATCATTTAAATAA
Found at i:10667306 original size:17 final size:16
Alignment explanation
Indices: 10667278--10667317 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
10667268 CACTTAATAC
* *
10667278 ATTTTAATTATATTTT
1 ATTTTTATTATATGTT
10667294 ATTATTTATTATATGTT
1 ATT-TTTATTATATGTT
10667311 ATTTTTA
1 ATTTTTA
10667318 GACACGTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (16 bp):
ATTTTTATTATATGTT
Found at i:10672097 original size:36 final size:36
Alignment explanation
Indices: 10672056--10672129 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
10672046 AAATTTAATA
10672056 TTTTGATCACTTTCCAGTTAAATCATTAATGAAATG
1 TTTTGATCACTTTCCAGTTAAATCATTAATGAAATG
*
10672092 TTTTGATCACTTTCCCGTTAAATCATTAATGAAATG
1 TTTTGATCACTTTCCAGTTAAATCATTAATGAAATG
10672128 TT
1 TT
10672130 AATGTATCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (36 bp):
TTTTGATCACTTTCCAGTTAAATCATTAATGAAATG
Found at i:10679567 original size:13 final size:14
Alignment explanation
Indices: 10679539--10679570 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
10679529 AAAGTATAAT
10679539 TTTAATTTTATTAA
1 TTTAATTTTATTAA
10679553 TTTAATTTT-TTAA
1 TTTAATTTTATTAA
10679566 TTTAA
1 TTTAA
10679571 ATGGCTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTAATTTTATTAA
Found at i:10685295 original size:17 final size:17
Alignment explanation
Indices: 10685270--10685303 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10685260 GACAGCCAAT
* *
10685270 TCATCTCTTTTTCTAAG
1 TCATATCTTTCTCTAAG
10685287 TCATATCTTTCTCTAAG
1 TCATATCTTTCTCTAAG
10685304 ATCGTACGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.24, G:0.06, T:0.50
Consensus pattern (17 bp):
TCATATCTTTCTCTAAG
Found at i:10686001 original size:25 final size:25
Alignment explanation
Indices: 10685967--10686019 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
10685957 TACGTGCAAG
10685967 GAAGGGTTAGCAACCTCACACGCCC
1 GAAGGGTTAGCAACCTCACACGCCC
10685992 GAAGGGTTAGCAACCTCACACGCCC
1 GAAGGGTTAGCAACCTCACACGCCC
10686017 GAA
1 GAA
10686020 ATTGGTACCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.30, C:0.34, G:0.25, T:0.11
Consensus pattern (25 bp):
GAAGGGTTAGCAACCTCACACGCCC
Found at i:10696146 original size:12 final size:12
Alignment explanation
Indices: 10696129--10696155 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
10696119 AGTCCCAATC
10696129 ATCACTTGTACA
1 ATCACTTGTACA
10696141 ATCACTTGTACA
1 ATCACTTGTACA
10696153 ATC
1 ATC
10696156 TGCCTTCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.33
Consensus pattern (12 bp):
ATCACTTGTACA
Found at i:10697744 original size:18 final size:18
Alignment explanation
Indices: 10697709--10697747 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
10697699 GTAATGCTGG
*
10697709 CGAACCCTTCAAGTTTGA
1 CGAACCCTTCAAGATTGA
* *
10697727 CGAACTCTTTAAGATTGA
1 CGAACCCTTCAAGATTGA
10697745 CGA
1 CGA
10697748 GCTATCACAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (18 bp):
CGAACCCTTCAAGATTGA
Found at i:10698394 original size:5 final size:5
Alignment explanation
Indices: 10698384--10698416 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
10698374 AATAACAAAA
10698384 ATATT ATATT ATATT ATATT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATA
10698417 GATTTTATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATATT
Found at i:10698646 original size:11 final size:11
Alignment explanation
Indices: 10698630--10698672 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
10698620 TATTATAAGA
*
10698630 TTAAATTTATT
1 TTAAATTTAAT
10698641 TTAAATTTAAAT
1 TTAAATTT-AAT
*
10698653 TTAAATTAAAT
1 TTAAATTTAAT
10698664 TTAAATTTA
1 TTAAATTTA
10698673 CTTTTAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:10698651 original size:6 final size:6
Alignment explanation
Indices: 10698630--10698703 Score: 73
Period size: 6 Copynumber: 12.8 Consensus size: 6
10698620 TATTATAAGA
* **
10698630 TTAAAT TT-ATT TTAAAT TTAAAT TTAAA- TTAAAT TTAAAT TTACTT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* * *
10698676 TTAAAA TTAAAA TT-ATT TTAAAT TTAAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAA
10698704 AGGTAAAAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
5 12 0.22
6 43 0.78
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (6 bp):
TTAAAT
Found at i:10698704 original size:17 final size:17
Alignment explanation
Indices: 10698612--10698703 Score: 114
Period size: 17 Copynumber: 5.4 Consensus size: 17
10698602 TGAACCCCTT
*
10698612 TTTAAATTTATTATAAGA
1 TTTAAATTTATTTTAA-A
10698630 -TTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
**
10698646 TTTAAATTTAAATTAAA
1 TTTAAATTTATTTTAAA
10698663 TTTAAATTTACTTTTAAA
1 TTTAAATTTA-TTTTAAA
* *
10698681 ATTAAAATTATTTTAAA
1 TTTAAATTTATTTTAAA
10698698 TTTAAA
1 TTTAAA
10698704 AGGTAAAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
16 1 0.02
17 50 0.78
18 13 0.20
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:10699438 original size:3 final size:3
Alignment explanation
Indices: 10699423--10699478 Score: 58
Period size: 3 Copynumber: 18.0 Consensus size: 3
10699413 AAATGATCAT
* * *
10699423 TAA TAA TAT TAA TAA TAA TTAA TAA TAA TAA TGAT TAC TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA T-AA TAA TAA TAA TAA
*
10699470 TAG TAA TAA
1 TAA TAA TAA
10699479 AAAGGGAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
3 39 0.89
4 5 0.11
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:10699445 original size:19 final size:19
Alignment explanation
Indices: 10699421--10699478 Score: 71
Period size: 19 Copynumber: 3.1 Consensus size: 19
10699411 TTAAATGATC
*
10699421 ATTAATAATATTAATAATA
1 ATTAATAATAATAATAATA
* *
10699440 ATTAATAATAATAATGATT
1 ATTAATAATAATAATAATA
* *
10699459 ACTAATAATAATAGTAATA
1 ATTAATAATAATAATAATA
10699478 A
1 A
10699479 AAAGGGAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (19 bp):
ATTAATAATAATAATAATA
Found at i:10699451 original size:16 final size:16
Alignment explanation
Indices: 10699426--10699471 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
10699416 TGATCATTAA
*
10699426 TAATATTAATAATAAT
1 TAATAATAATAATAAT
*
10699442 TAATAATAATAATGAT
1 TAATAATAATAATAAT
*
10699458 TACTAATAATAATA
1 TAATAATAATAATA
10699472 GTAATAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (16 bp):
TAATAATAATAATAAT
Found at i:10700572 original size:30 final size:29
Alignment explanation
Indices: 10700536--10700674 Score: 133
Period size: 30 Copynumber: 4.7 Consensus size: 29
10700526 CCCAGGAGGT
10700536 CCCTAAACTATCCAAAAATCATATTTTGAC
1 CCCTAAACT-TCCAAAAATCATATTTTGAC
* * * *
10700566 CCCTAAACTTTTCAAAAATTACATTTTAAC
1 CCCTAAAC-TTCCAAAAATCATATTTTGAC
*
10700596 CCCTAAACTT-CACAAAATTATATATTTG-C
1 CCCTAAACTTCCA-AAAATCATAT-TTTGAC
10700625 CCCTAAACTTCCAAAAATTCCAT-TTTTGAC
1 CCCTAAACTTCCAAAAA-T-CATATTTTGAC
*
10700655 CCC-AAATTTTCCAAAAATCA
1 CCCTAAA-CTTCCAAAAATCA
10700675 CCATTTTTTC
Statistics
Matches: 93, Mismatches: 8, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
28 4 0.04
29 34 0.37
30 52 0.56
31 3 0.03
ACGTcount: A:0.39, C:0.27, G:0.02, T:0.32
Consensus pattern (29 bp):
CCCTAAACTTCCAAAAATCATATTTTGAC
Found at i:10700652 original size:29 final size:29
Alignment explanation
Indices: 10700536--10700739 Score: 130
Period size: 29 Copynumber: 6.9 Consensus size: 29
10700526 CCCAGGAGGT
10700536 CCCTAAACTATCCAAAAA-T-CATATTTTGAC
1 CCCTAAACT-TCCAAAAATTCCAT-TTTTG-C
* * **
10700566 CCCTAAACTTTTCAAAAATTACATTTTAAC
1 CCCTAAAC-TTCCAAAAATTCCATTTTTGC
** *
10700596 CCCTAAACTT-CACAAAATTATATATTTGC
1 CCCTAAACTTCCA-AAAATTCCATTTTTGC
10700625 CCCTAAACTTCCAAAAATTCCATTTTTGAC
1 CCCTAAACTTCCAAAAATTCCATTTTTG-C
* * *
10700655 CCC-AAATTTTCCAAAAATCACCATTTTTTC
1 CCCTAAA-CTTCCAAAAAT-TCCATTTTTGC
* * * **
10700685 CTC-GAACTTTCAAAAATTCCATTTTAAC
1 CCCTAAACTTCCAAAAATTCCATTTTTGC
* * *
10700713 CCCGAACCTTCCAAAAATCACCATTTT
1 CCCTAAACTTCCAAAAAT-TCCATTTT
10700740 ACCCCCAGAT
Statistics
Matches: 139, Mismatches: 25, Indels: 20
0.76 0.14 0.11
Matches are distributed among these distances:
28 12 0.09
29 59 0.42
30 52 0.37
31 13 0.09
32 3 0.02
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.33
Consensus pattern (29 bp):
CCCTAAACTTCCAAAAATTCCATTTTTGC
Found at i:10700735 original size:58 final size:59
Alignment explanation
Indices: 10700546--10700798 Score: 187
Period size: 59 Copynumber: 4.3 Consensus size: 59
10700536 CCCTAAACTA
* * * * * *
10700546 TCCAAAAATCA-TATTTTGACCCCTAAACTTTTCAAAAATTACA-TTTTAACCCCTAAACT
1 TCCAAAAATCACCATTTTTACCCC-CAAC-TTTCAAAAATTCCATTTTTAACCCCGAACCT
* * * * * * * * **
10700605 T-CACAAAATTA-TATATTTGCCCCTAAACTTCCAAAAATTCCATTTTTGACCCCAAATTT
1 TCCA-AAAATCACCATTTTTACCCC-CAACTTTCAAAAATTCCATTTTTAACCCCGAACCT
* * *
10700664 TCCAAAAATCACCATTTTTTCCTCGAACTTTCAAAAATTCCA-TTTTAACCCCGAACCT
1 TCCAAAAATCACCATTTTTACCCCCAACTTTCAAAAATTCCATTTTTAACCCCGAACCT
* * *
10700722 TCCAAAAATCACCA-TTTTACCCCCAGA-TGTCTAAAAATTCCATTTTTAACACTGAACCT
1 TCCAAAAATCACCATTTTTACCCCCA-ACTTTC-AAAAATTCCATTTTTAACCCCGAACCT
* *
10700781 TTCAAAAATTACCATTTT
1 TCCAAAAATCACCATTTT
10700799 GCCCCCGGAT
Statistics
Matches: 157, Mismatches: 29, Indels: 15
0.78 0.14 0.07
Matches are distributed among these distances:
57 11 0.07
58 51 0.32
59 82 0.52
60 13 0.08
ACGTcount: A:0.36, C:0.27, G:0.03, T:0.34
Consensus pattern (59 bp):
TCCAAAAATCACCATTTTTACCCCCAACTTTCAAAAATTCCATTTTTAACCCCGAACCT
Found at i:10700739 original size:30 final size:28
Alignment explanation
Indices: 10700630--10700798 Score: 99
Period size: 30 Copynumber: 5.8 Consensus size: 28
10700620 TTTGCCCCTA
* * *
10700630 AACTTCCAAAAATTCCATTTTTGACCCCA
1 AACTTCCAAAAATACCA-TTTTAACCCCG
* ** *
10700659 AATTTTCCAAAAATCACCATTTTTTCCTCG
1 AA-CTTCCAAAAAT-ACCATTTTAACCCCG
* *
10700689 AACTTTCAAAAATTCCATTTTAACCCCG
1 AACTTCCAAAAATACCATTTTAACCCCG
*
10700717 AACCTTCCAAAAATCACCATTTT-ACCCCC
1 AA-CTTCCAAAAAT-ACCATTTTAACCCCG
* * * *
10700746 AGA-TGTCTAAAAATTCCATTTTTAACACTG
1 A-ACT-TCCAAAAATACCA-TTTTAACCCCG
*
10700776 AACCTTTCAAAAATTACCATTTT
1 AA-CTTCCAAAAA-TACCATTTT
10700799 GCCCCCGGAT
Statistics
Matches: 106, Mismatches: 23, Indels: 21
0.71 0.15 0.14
Matches are distributed among these distances:
28 17 0.16
29 40 0.38
30 41 0.39
31 8 0.08
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.34
Consensus pattern (28 bp):
AACTTCCAAAAATACCATTTTAACCCCG
Found at i:10700743 original size:29 final size:29
Alignment explanation
Indices: 10700630--10700798 Score: 105
Period size: 29 Copynumber: 5.7 Consensus size: 29
10700620 TTTGCCCCTA
* * *
10700630 AACTTCCAAAAATTCCATTTTTGACCCCA
1 AACTTCCAAAAATACCATTTTTAACCCCG
* * *
10700659 AATTTTCCAAAAATCACCATTTTT-TCCTCG
1 AA-CTTCCAAAAAT-ACCATTTTTAACCCCG
* *
10700689 AACTTTCAAAAATTCCA-TTTTAACCCCG
1 AACTTCCAAAAATACCATTTTTAACCCCG
*
10700717 AACCTTCCAAAAATCACCA-TTTT-ACCCCC
1 AA-CTTCCAAAAAT-ACCATTTTTAACCCCG
* * * *
10700746 AGA-TGTCTAAAAATTCCATTTTTAACACTG
1 A-ACT-TCCAAAAATACCATTTTTAACCCCG
*
10700776 AACCTTTCAAAAATTACCATTTT
1 AA-CTTCCAAAAA-TACCATTTT
10700799 GCCCCCGGAT
Statistics
Matches: 107, Mismatches: 21, Indels: 22
0.71 0.14 0.15
Matches are distributed among these distances:
27 4 0.04
28 13 0.12
29 40 0.37
30 33 0.31
31 17 0.16
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.34
Consensus pattern (29 bp):
AACTTCCAAAAATACCATTTTTAACCCCG
Found at i:10700858 original size:59 final size:58
Alignment explanation
Indices: 10700696--10700860 Score: 213
Period size: 59 Copynumber: 2.8 Consensus size: 58
10700686 TCGAACTTTC
* * *
10700696 AAAAATTCCATTTTAACCCCGAACCTTCCAAAAATCACCATTTTACCCCCAGATGTCT
1 AAAAATTCCATTTTAACCCTGAACCTTCCAAAAATTACCATTTTGCCCCCAGATGTCT
* * *
10700754 AAAAATTCCATTTTTAACACTGAACCTTTCAAAAATTACCATTTTGCCCCCGGATGTCT
1 AAAAATTCCA-TTTTAACCCTGAACCTTCCAAAAATTACCATTTTGCCCCCAGATGTCT
* * * * *
10700813 TAAAATTTCATATTTGACCCTGAATCTTCCAAAAATTACCGTTTTGCC
1 AAAAATTCCAT-TTTAACCCTGAACCTTCCAAAAATTACCATTTTGCC
10700861 TCCGAGCATC
Statistics
Matches: 92, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
58 11 0.12
59 81 0.88
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (58 bp):
AAAAATTCCATTTTAACCCTGAACCTTCCAAAAATTACCATTTTGCCCCCAGATGTCT
Found at i:10713301 original size:7 final size:7
Alignment explanation
Indices: 10713289--10713313 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10713279 AAGATTGGTA
10713289 TGGATTT
1 TGGATTT
10713296 TGGATTT
1 TGGATTT
10713303 TGGATTT
1 TGGATTT
10713310 TGGA
1 TGGA
10713314 AGGCATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (7 bp):
TGGATTT
Found at i:10716528 original size:3 final size:3
Alignment explanation
Indices: 10716520--10716547 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
10716510 TTAAAAATTA
10716520 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
10716548 AGAAAAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:10717112 original size:9 final size:9
Alignment explanation
Indices: 10717066--10717124 Score: 52
Period size: 9 Copynumber: 6.6 Consensus size: 9
10717056 AAAATTATAG
10717066 TTTTATAA-
1 TTTTATAAT
10717074 TTTTATAAT
1 TTTTATAAT
*
10717083 TTTT-TAAGC
1 TTTTATAA-T
*
10717092 TTTTA-ATTT
1 TTTTATA-AT
10717101 TTTTATAAT
1 TTTTATAAT
10717110 TTTTATAAT
1 TTTTATAAT
10717119 ATTTTA
1 -TTTTA
10717125 AACAACATCT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 11 0.27
9 24 0.59
10 6 0.15
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTTATAAT
Found at i:10722329 original size:40 final size:38
Alignment explanation
Indices: 10722261--10722395 Score: 96
Period size: 40 Copynumber: 3.4 Consensus size: 38
10722251 ACCAGAATGG
* *
10722261 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAAAGTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAG-AATAAAGTGA
* *
10722301 CACCCAGTGTCTCATCGGCCTAGCCGAAG--TAAAGTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAATAAAGTGA
* * * * *
10722338 TACCCAGTACCTCATCGAATCTATCCGAAGTAA-AATAATGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAG-AATAA-AGTGA
*
10722379 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
10722396 ACTCGAGGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
37 21 0.28
38 9 0.12
40 24 0.32
41 20 0.27
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAATAAAGTGA
Found at i:10722393 original size:41 final size:38
Alignment explanation
Indices: 10722293--10722396 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 38
10722283 TTCGAAGCAA
* *
10722293 TAAAGTGACACCCAGTGTCTCATCG-GCCTAGCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
* ** ** * *
10722330 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
10722368 TAAAATAATGACACCCAGTGTCTCATCGA
1 T--AA-AATGACACCCAGTGTCTCATCGA
10722397 CTCGAGGTCG
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
37 21 0.41
38 10 0.20
40 2 0.04
41 18 0.35
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (38 bp):
TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
Found at i:10723319 original size:13 final size:12
Alignment explanation
Indices: 10723249--10723330 Score: 60
Period size: 13 Copynumber: 6.6 Consensus size: 12
10723239 CATATACATA
*
10723249 TATATATATTAGT
1 TATA-ATATTAAT
*
10723262 TAATAATAATAA-
1 T-ATAATATTAAT
*
10723274 TATAATACTAAT
1 TATAATATTAAT
*
10723286 TA-AATAATAATT
1 TATAATATTAA-T
*
10723298 TATATTATTATAT
1 TATAATATTA-AT
10723311 TATAATATTAAT
1 TATAATATTAAT
10723323 TAATAATA
1 T-ATAATA
10723331 AATTAAAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
11 16 0.29
12 9 0.16
13 27 0.48
14 4 0.07
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (12 bp):
TATAATATTAAT
Found at i:10728459 original size:40 final size:38
Alignment explanation
Indices: 10728391--10728525 Score: 96
Period size: 40 Copynumber: 3.4 Consensus size: 38
10728381 ACCAGAATGG
* *
10728391 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAAAGTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAG-AATAAAGTGA
* *
10728431 CACCCAGTGTCTCATCGGCCTAGCCGAAG--TAAAGTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAATAAAGTGA
* * * * *
10728468 TACCCAGTACCTCATCGAATCTATCCGAAGTAA-AATAATGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAG-AATAA-AGTGA
*
10728509 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
10728526 ACTCGAGGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
37 21 0.28
38 9 0.12
40 24 0.32
41 20 0.27
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAATAAAGTGA
Found at i:10728523 original size:41 final size:38
Alignment explanation
Indices: 10728423--10728526 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 38
10728413 TTCGAAGCAA
* *
10728423 TAAAGTGACACCCAGTGTCTCATCG-GCCTAGCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
* ** ** * *
10728460 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
10728498 TAAAATAATGACACCCAGTGTCTCATCGA
1 T--AA-AATGACACCCAGTGTCTCATCGA
10728527 CTCGAGGTCG
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
37 21 0.41
38 10 0.20
40 2 0.04
41 18 0.35
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (38 bp):
TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
Found at i:10729449 original size:13 final size:12
Alignment explanation
Indices: 10729379--10729460 Score: 60
Period size: 13 Copynumber: 6.6 Consensus size: 12
10729369 CATATACATA
*
10729379 TATATATATTAGT
1 TATA-ATATTAAT
*
10729392 TAATAATAATAA-
1 T-ATAATATTAAT
*
10729404 TATAATACTAAT
1 TATAATATTAAT
*
10729416 TA-AATAATAATT
1 TATAATATTAA-T
*
10729428 TATATTATTATAT
1 TATAATATTA-AT
10729441 TATAATATTAAT
1 TATAATATTAAT
10729453 TAATAATA
1 T-ATAATA
10729461 AATTAAAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
11 16 0.29
12 9 0.16
13 27 0.48
14 4 0.07
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (12 bp):
TATAATATTAAT
Found at i:10733733 original size:23 final size:23
Alignment explanation
Indices: 10733659--10733872 Score: 160
Period size: 23 Copynumber: 9.5 Consensus size: 23
10733649 TAAACGGAAC
* * *
10733659 AAACAGAGAGTAC-CGAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
*
10733681 AAACAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
10733703 GGGTAACAGAGAGCACACAAAGTGCT
1 ---AAACAGAGAGCACACAAAGTGCT
*
10733729 AAACAGAGAGTACACAAA--G-T
1 AAACAGAGAGCACACAAAGTGCT
*
10733749 --AC--TGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
10733768 AATCAGAGAGCACACGAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* * *
10733791 AATCGGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
10733814 AATAACAGAGAGCACGA-GACGTGCT
1 -A-AACAGAGAGCAC-ACAAAGTGCT
*
10733839 AAACAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
10733862 AATCAGAGAGC
1 AAACAGAGAGC
10733873 GCGCTAGTGT
Statistics
Matches: 152, Mismatches: 24, Indels: 31
0.73 0.12 0.15
Matches are distributed among these distances:
16 10 0.07
18 3 0.02
19 1 0.01
20 1 0.01
21 2 0.01
22 19 0.12
23 78 0.51
24 2 0.01
25 28 0.18
26 8 0.05
ACGTcount: A:0.42, C:0.21, G:0.25, T:0.12
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:10733767 original size:39 final size:39
Alignment explanation
Indices: 10733713--10733787 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
10733703 GGGTAACAGA
*
10733713 GAGCACACAAAGTGCTAAACAGAGAGTACACAAAGTACT
1 GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGTACT
* *
10733752 GAGCACACAAAGTGCTAATCAGAGAGCACACGAAGT
1 GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGT
10733788 GCTAATCGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (39 bp):
GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGTACT
Found at i:10733826 original size:48 final size:46
Alignment explanation
Indices: 10733752--10733872 Score: 172
Period size: 48 Copynumber: 2.6 Consensus size: 46
10733742 ACAAAGTACT
* * *
10733752 GAGCACACAAAGTGCTAATCAGAGAGCAC-ACGAAGTGCTAATCGGA
1 GAGCACACACAGTGCTAATCAGAGAGCACGA-GAAGTGCTAAACAGA
*
10733798 GAGCACACACAGTGCTAATAACAGAGAGCACGAGACGTGCTAAACAGA
1 GAGCACACACAGTGCTAAT--CAGAGAGCACGAGAAGTGCTAAACAGA
10733846 GAGCACACACAGTGCTAATCAGAGAGC
1 GAGCACACACAGTGCTAATCAGAGAGC
10733873 GCGCTAGTGT
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
46 26 0.38
48 41 0.60
49 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.12
Consensus pattern (46 bp):
GAGCACACACAGTGCTAATCAGAGAGCACGAGAAGTGCTAAACAGA
Found at i:10738415 original size:27 final size:27
Alignment explanation
Indices: 10738366--10738429 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
10738356 ATTGAGCTGT
*
10738366 TTAAATTAGAAAATAAAAATATTAGTAA
1 TTAAATTA-AAAATAAAAATATTAATAA
*
10738394 TTAAATTAAAAATAAAATTATTAATAA
1 TTAAATTAAAAATAAAAATATTAATAA
10738421 TT-AATTAAA
1 TTAAATTAAA
10738430 TAGAATATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 7 0.21
27 19 0.56
28 8 0.24
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (27 bp):
TTAAATTAAAAATAAAAATATTAATAA
Found at i:10740733 original size:23 final size:25
Alignment explanation
Indices: 10740690--10740736 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
10740680 GTTGGATCCA
10740690 AATTAAATTCTAAAAAGATAATTTG
1 AATTAAATTCTAAAAAGATAATTTG
10740715 AATTAAA-TCTAAAAA-ATAATTT
1 AATTAAATTCTAAAAAGATAATTT
10740737 CCTAACTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 7 0.32
24 8 0.36
25 7 0.32
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.36
Consensus pattern (25 bp):
AATTAAATTCTAAAAAGATAATTTG
Found at i:10744204 original size:29 final size:30
Alignment explanation
Indices: 10744148--10744204 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
10744138 TACCCTAATA
* *
10744148 AGAAACCTGAAAAACAGCGTTGTAAGAGAG
1 AGAAACCTGAAAAACAGCATCGTAAGAGAG
*
10744178 AGAAA-CTGAAAAACAGCATCGTGAGAG
1 AGAAACCTGAAAAACAGCATCGTAAGAG
10744205 GGACAGAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.47, C:0.14, G:0.26, T:0.12
Consensus pattern (30 bp):
AGAAACCTGAAAAACAGCATCGTAAGAGAG
Found at i:10745051 original size:68 final size:68
Alignment explanation
Indices: 10744942--10745081 Score: 262
Period size: 68 Copynumber: 2.1 Consensus size: 68
10744932 AGAGAGTGAA
* *
10744942 ATTATGTTTCACCTTTGTTGACTTTCTTGGGTTTTTTATTCTCACCTTGAAAAATGGAGACTGGT
1 ATTATGTTTCACCTTTGTTGAATTTCTTGGGATTTTTATTCTCACCTTGAAAAATGGAGACTGGT
10745007 GGT
66 GGT
10745010 ATTATGTTTCACCTTTGTTGAATTTCTTGGGATTTTTATTCTCACCTTGAAAAATGGAGACTGGT
1 ATTATGTTTCACCTTTGTTGAATTTCTTGGGATTTTTATTCTCACCTTGAAAAATGGAGACTGGT
10745075 GGT
66 GGT
10745078 ATTA
1 ATTA
10745082 GTGGCGGGGA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.21, C:0.14, G:0.20, T:0.45
Consensus pattern (68 bp):
ATTATGTTTCACCTTTGTTGAATTTCTTGGGATTTTTATTCTCACCTTGAAAAATGGAGACTGGT
GGT
Found at i:10757701 original size:18 final size:18
Alignment explanation
Indices: 10757678--10757712 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10757668 AATATAATTA
*
10757678 TATAATACTTTTTATATT
1 TATAATACGTTTTATATT
*
10757696 TATAATTCGTTTTATAT
1 TATAATACGTTTTATAT
10757713 AGATTTTGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (18 bp):
TATAATACGTTTTATATT
Found at i:10765073 original size:18 final size:18
Alignment explanation
Indices: 10765052--10765124 Score: 55
Period size: 19 Copynumber: 4.2 Consensus size: 18
10765042 AACAAATTTT
10765052 ATTATTAATTTATTTTAA
1 ATTATTAATTTATTTTAA
* *
10765070 ATTATAAATTTTATTATAA
1 ATTATTAA-TTTATTTTAA
10765089 A-T-TT--TTTATTTTAA
1 ATTATTAATTTATTTTAA
* * *
10765103 ATAAATATTTATATTTTAA
1 ATTATTAATT-TATTTTAA
10765122 ATT
1 ATT
10765125 TATGCTTTCT
Statistics
Matches: 42, Mismatches: 7, Indels: 11
0.70 0.12 0.18
Matches are distributed among these distances:
14 10 0.24
16 1 0.02
17 1 0.02
18 10 0.24
19 20 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTATTAATTTATTTTAA
Found at i:10765099 original size:19 final size:19
Alignment explanation
Indices: 10765085--10765123 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
10765075 AAATTTTATT
*
10765085 ATAAAT-TTTTTATTTTAA
1 ATAAATATTTATATTTTAA
10765103 ATAAATATTTATATTTTAA
1 ATAAATATTTATATTTTAA
10765122 AT
1 AT
10765124 TTATGCTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
ATAAATATTTATATTTTAA
Found at i:10765102 original size:33 final size:31
Alignment explanation
Indices: 10765029--10765125 Score: 87
Period size: 33 Copynumber: 3.1 Consensus size: 31
10765019 AAAAAATGGC
* *
10765029 ATTTTGTA-TTTAAA-ACAAATTTTATTATTA
1 ATTTTTTATTTTAAATA-AAATTTTATTATAA
10765059 A---TTTATTTTAAATTATAAATTTTATTATAA
1 ATTTTTTATTTTAAA-TA-AAATTTTATTATAA
*
10765089 ATTTTTTATTTTAAATAAATATTTATATTTTAA
1 ATTTTTTATTTTAAATAAA-ATTT-TATTATAA
10765122 ATTT
1 ATTT
10765126 ATGCTTTCTA
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
27 3 0.05
28 6 0.11
30 16 0.29
31 2 0.04
32 6 0.11
33 22 0.40
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (31 bp):
ATTTTTTATTTTAAATAAAATTTTATTATAA
Found at i:10765107 original size:30 final size:30
Alignment explanation
Indices: 10765029--10765114 Score: 79
Period size: 30 Copynumber: 2.8 Consensus size: 30
10765019 AAAAAATGGC
* * * *
10765029 ATTTTGTATTTAAAACAAATTTTATTATTA
1 ATTTTTTATTTTAAATAAATTTTATTATAA
10765059 A---TTTATTTTAAATTATAAATTTTATTATAA
1 ATTTTTTATTTT-AA--ATAAATTTTATTATAA
10765089 ATTTTTTATTTTAAATAAATATTTAT
1 ATTTTTTATTTTAAATAAAT-TTTAT
10765115 ATTTTAAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
27 6 0.13
28 2 0.04
30 22 0.49
31 5 0.11
32 2 0.04
33 8 0.18
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (30 bp):
ATTTTTTATTTTAAATAAATTTTATTATAA
Found at i:10771154 original size:25 final size:23
Alignment explanation
Indices: 10771126--10771171 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
10771116 GTTGGATCCA
10771126 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
10771151 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
10771172 CCTTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:10773533 original size:18 final size:19
Alignment explanation
Indices: 10773498--10773539 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
10773488 TTAGAAAAAT
* *
10773498 TAAATTAAAAATGCAATAA
1 TAAAATAAAAATGAAATAA
10773517 TAAAATAAAAAT-AAATAA
1 TAAAATAAAAATGAAATAA
10773535 TAAAA
1 TAAAA
10773540 AAATTGTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (19 bp):
TAAAATAAAAATGAAATAA
Found at i:10774627 original size:25 final size:23
Alignment explanation
Indices: 10774599--10774644 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
10774589 GTTGGATCCA
10774599 AATTAAATTCTAAAAAGATAATTAT
1 AATTAAA-TCTAAAAA-ATAATTAT
*
10774624 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
10774645 CCTTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.35
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAT
Found at i:10777475 original size:25 final size:24
Alignment explanation
Indices: 10777442--10777490 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
10777432 AATAGGGTTG
*
10777442 AAATTAAATTATAA-ATTTTTATAA
1 AAATTAAATT-TAATATTTTAATAA
10777466 AAATGTAAATTTAATATTTTAATAA
1 AAAT-TAAATTTAATATTTTAATAA
10777491 TTTATATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
AAATTAAATTTAATATTTTAATAA
Found at i:10798772 original size:16 final size:16
Alignment explanation
Indices: 10798751--10798793 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
10798741 TTGGCCACGC
*
10798751 CTTTCTTTCTT-TTGCT
1 CTTTCTTT-TTGTTCCT
10798767 CTTTCTTTTTGTTCCT
1 CTTTCTTTTTGTTCCT
10798783 CTTTCTCTTTT
1 CTTTCT-TTTT
10798794 TTGGTTTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 2 0.08
16 18 0.75
17 4 0.17
ACGTcount: A:0.00, C:0.26, G:0.05, T:0.70
Consensus pattern (16 bp):
CTTTCTTTTTGTTCCT
Found at i:10807683 original size:99 final size:99
Alignment explanation
Indices: 10807512--10807712 Score: 402
Period size: 99 Copynumber: 2.0 Consensus size: 99
10807502 TCTTTCAGTC
10807512 GCAATCTAGATTGTCTTCAAGCTATTCAAGAAACTGCAAGGACAATTGAGGTATACAAACAATGT
1 GCAATCTAGATTGTCTTCAAGCTATTCAAGAAACTGCAAGGACAATTGAGGTATACAAACAATGT
10807577 ATAGCTAAATACATGATTTACATTCTGAGATACG
66 ATAGCTAAATACATGATTTACATTCTGAGATACG
10807611 GCAATCTAGATTGTCTTCAAGCTATTCAAGAAACTGCAAGGACAATTGAGGTATACAAACAATGT
1 GCAATCTAGATTGTCTTCAAGCTATTCAAGAAACTGCAAGGACAATTGAGGTATACAAACAATGT
10807676 ATAGCTAAATACATGATTTACATTCTGAGATACG
66 ATAGCTAAATACATGATTTACATTCTGAGATACG
10807710 GCA
1 GCA
10807713 GCATTCATTT
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 102 1.00
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.28
Consensus pattern (99 bp):
GCAATCTAGATTGTCTTCAAGCTATTCAAGAAACTGCAAGGACAATTGAGGTATACAAACAATGT
ATAGCTAAATACATGATTTACATTCTGAGATACG
Found at i:10815904 original size:18 final size:18
Alignment explanation
Indices: 10815881--10815918 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10815871 ACCATCTTCA
10815881 TCATCTCCATCTTCATCG
1 TCATCTCCATCTTCATCG
* *
10815899 TCATCTTCATCTTCGTCG
1 TCATCTCCATCTTCATCG
10815917 TC
1 TC
10815919 GCCTTGGAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.37, G:0.08, T:0.42
Consensus pattern (18 bp):
TCATCTCCATCTTCATCG
Found at i:10819067 original size:59 final size:59
Alignment explanation
Indices: 10818997--10819114 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 59
10818987 TTTATTTCCT
* *
10818997 CTCTCAGTTGTATATTTATACTATTAATAAAACTTATAACTGAGTTGGTGTCACCCTCA
1 CTCTCAATTGTATATTTATACTATTAATAAAACCTATAACTGAGTTGGTGTCACCCTCA
10819056 CTCTCAATTGTATATTTATACTATTAATAAAACCTATAACTGAGTTGGTGTCACCCTCA
1 CTCTCAATTGTATATTTATACTATTAATAAAACCTATAACTGAGTTGGTGTCACCCTCA
10819115 ACTGGGTCAC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.38
Consensus pattern (59 bp):
CTCTCAATTGTATATTTATACTATTAATAAAACCTATAACTGAGTTGGTGTCACCCTCA
Found at i:10819744 original size:17 final size:17
Alignment explanation
Indices: 10819702--10819812 Score: 132
Period size: 17 Copynumber: 6.3 Consensus size: 17
10819692 TTAAACCCAT
10819702 TTTAAGATTTATTTTAAA
1 TTTAA-ATTTATTTTAAA
* *
10819720 GATTAAATTTATTTTGAA
1 -TTTAAATTTATTTTAAA
*
10819738 TTTAAATTTATTTTAAG
1 TTTAAATTTATTTTAAA
10819755 TTTAAATTTATTTTAAAA
1 TTTAAATTTATTTT-AAA
* *
10819773 TTTAGATTTAATTTAAA
1 TTTAAATTTATTTTAAA
*
10819790 TTTAAATTCATATTTAAA
1 TTTAAATTTAT-TTTAAA
10819808 TTTAA
1 TTTAA
10819813 GACTTAATAA
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
17 39 0.49
18 36 0.46
19 4 0.05
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:10819747 original size:6 final size:6
Alignment explanation
Indices: 10819722--10819812 Score: 73
Period size: 6 Copynumber: 15.7 Consensus size: 6
10819712 ATTTTAAAGA
* * * * *
10819722 TTAAAT TT-ATT TTGAAT TTAAAT TT-ATT TTAAGT TTAAAT TT-ATT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* * *
10819767 TTAAAAT TTAGAT TT-AAT TTAAAT TTAAAT TCATAT TTAAAT TTAA
1 TT-AAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAA
10819813 GACTTAATAA
Statistics
Matches: 66, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
5 16 0.24
6 46 0.70
7 4 0.06
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (6 bp):
TTAAAT
Found at i:10819749 original size:35 final size:35
Alignment explanation
Indices: 10819702--10819812 Score: 136
Period size: 35 Copynumber: 3.1 Consensus size: 35
10819692 TTAAACCCAT
* *
10819702 TTTAAGATTTATTTTAAAGATTAAATTTATTTTGAA
1 TTTAA-ATTTATTTTAAAGTTTAAATTTATTTTAAA
10819738 TTTAAATTTATTTT-AAGTTTAAATTTATTTTAAAA
1 TTTAAATTTATTTTAAAGTTTAAATTTATTTT-AAA
* * *
10819773 TTTAGATTTAATTTAAA-TTTAAATTCATATTTAAA
1 TTTAAATTTATTTTAAAGTTTAAATTTAT-TTTAAA
10819808 TTTAA
1 TTTAA
10819813 GACTTAATAA
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
34 16 0.24
35 40 0.61
36 10 0.15
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.54
Consensus pattern (35 bp):
TTTAAATTTATTTTAAAGTTTAAATTTATTTTAAA
Found at i:10821455 original size:3 final size:3
Alignment explanation
Indices: 10821447--10821488 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
10821437 TTCTATTCCT
10821447 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
10821489 ACCTTTTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:10831207 original size:7 final size:7
Alignment explanation
Indices: 10831195--10831223 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
10831185 GTGCTTTTTC
10831195 TTTTGGT
1 TTTTGGT
10831202 TTTTGGT
1 TTTTGGT
10831209 TTTTGGT
1 TTTTGGT
10831216 TTTTGGT
1 TTTTGGT
10831223 T
1 T
10831224 AACAATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.28, T:0.72
Consensus pattern (7 bp):
TTTTGGT
Found at i:10831901 original size:13 final size:13
Alignment explanation
Indices: 10831883--10831907 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10831873 TGCAGTTATA
10831883 TATATATATAATG
1 TATATATATAATG
10831896 TATATATATAAT
1 TATATATATAAT
10831908 TGATGGAGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
TATATATATAATG
Found at i:10832472 original size:300 final size:296
Alignment explanation
Indices: 10831900--10832480 Score: 656
Period size: 300 Copynumber: 1.9 Consensus size: 296
10831890 ATAATGTATA
* * ** * *
10831900 TATATAATTGATGGAGGTAATAAAATGTGCATAATAAAAATTGAAATGTATAAAGTATTGAGATA
1 TATACAATTGATGGAGATAATAAAATGTGCATAATAAAAATTGAAATGTATAAAACATTAAAATA
** * * *
10831965 AAACTTTAGTTGAGCAAATTAAAAGTTTTATTGATGTAATTGGTTCGGGTTCAAATCTCACAATA
66 AAACTTTAACTGAGCAAATTAAAAGTTTTATT-ATGTAATTGGTTCGAGATCAAATCACACAATA
* ** * *
10832030 TGTATATTTTTATTGGTTTCTTAAATAAAAAGACTAAATTAACTTTGAATTATATAATTAATTTT
130 TGTATATTTTTATTGATTTCTTAAATAAAAAGACTAAATTAACTTCAAATAATATAATTAATTCT
* * * **
10832095 AATTACGAAAGAATATTTTTGTTATTTTTCTAACCGAGCTGGTGACCTATTTGAGGGTGACACCA
195 AATTACGAAAGAATATTTTCGTAATTTTTCTAACCGAGCTAGTGACCTATTTGAAAGTGACACCA
10832160 ACTCAATAAAACACTTAATAACTAGTATAGATAAATT
260 ACTCAATAAAACACTTAATAACTAGTATAGATAAATT
* * *
10832197 TATACAATTGATTGAGATAATAAAGTGTGCATAATAAAAATTGAACTGTATAAAAACATTAAAAT
1 TATACAATTGATGGAGATAATAAAATGTGCATAATAAAAATTGAAATGTAT-AAAACATTAAAAT
* * * *
10832262 AAAGCTTTAACTGAGTGATAAATTAAAATTTTTACTT-T-TCAATTGGTTTGAGATCAAATCACA
65 AAAACTTTAACTGA--G-CAAATTAAAAGTTTTA-TTATGT-AATTGGTTCGAGATCAAATCACA
* *
10832325 CAATA-GATATATTTTT-TTCGATTTTTTAAATAAAAAGATTAAATT-ACTCTCAAATAATATAA
125 CAATATG-TATATTTTTATT-GATTTCTTAAATAAAAAGACTAAATTAACT-TCAAATAATATAA
* * * *
10832387 TTTATTCTAATTA-TAAA-AAGGTATTTTCGTAATTTTTCTAACCGAGTTAGTGACTTGA-TTGA
187 TTAATTCTAATTACGAAAGAA--TATTTTCGTAATTTTTCTAACCGAGCTAGTGACCT-ATTTGA
* * *
10832449 AAGTGACGCTAACTCAGTAAAACACTTAATAA
249 AAGTGACACCAACTCAATAAAACACTTAATAA
10832481 ACAATATAGA
Statistics
Matches: 235, Mismatches: 37, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
297 46 0.20
298 22 0.09
299 10 0.04
300 140 0.60
301 15 0.06
302 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37
Consensus pattern (296 bp):
TATACAATTGATGGAGATAATAAAATGTGCATAATAAAAATTGAAATGTATAAAACATTAAAATA
AAACTTTAACTGAGCAAATTAAAAGTTTTATTATGTAATTGGTTCGAGATCAAATCACACAATAT
GTATATTTTTATTGATTTCTTAAATAAAAAGACTAAATTAACTTCAAATAATATAATTAATTCTA
ATTACGAAAGAATATTTTCGTAATTTTTCTAACCGAGCTAGTGACCTATTTGAAAGTGACACCAA
CTCAATAAAACACTTAATAACTAGTATAGATAAATT
Done.