Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 39 of 135
Found at i:14739330 original size:15 final size:15
Alignment explanation
Indices: 14739310--14739351 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
14739300 ATGATTTATT
14739310 ATATATTATTTTCAA
1 ATATATTATTTTCAA
14739325 ATATA-TATTTT-AA
1 ATATATTATTTTCAA
*
14739338 ATATATAATTTTCA
1 ATATATTATTTTCA
14739352 CCTTGCTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 7 0.29
14 11 0.46
15 6 0.25
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATATTATTTTCAA
Found at i:14742793 original size:20 final size:20
Alignment explanation
Indices: 14742765--14742802 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14742755 TCACGTCAGC
14742765 AAATGATTTTAAAATTATTA
1 AAATGATTTTAAAATTATTA
*
14742785 AAATTATTTTAAAATTAT
1 AAATGATTTTAAAATTAT
14742803 AATCATCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
AAATGATTTTAAAATTATTA
Found at i:14742796 original size:11 final size:11
Alignment explanation
Indices: 14742765--14742802 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
14742755 TCACGTCAGC
*
14742765 AAATGATTTTA
1 AAATTATTTTA
14742776 AAATTA--TTA
1 AAATTATTTTA
14742785 AAATTATTTTA
1 AAATTATTTTA
14742796 AAATTAT
1 AAATTAT
14742803 AATCATCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
9 9 0.38
11 15 0.62
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (11 bp):
AAATTATTTTA
Found at i:14743509 original size:23 final size:23
Alignment explanation
Indices: 14743460--14743509 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
14743450 GACCACCCAA
*
14743460 AACCCAAAATCCCCAAATTCAAT
1 AACCCAAAATCCCCAAATTCAAC
* * *
14743483 AACCTAAAATCTCCAAATTCGAC
1 AACCCAAAATCCCCAAATTCAAC
14743506 AACC
1 AACC
14743510 ATAATCAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.46, C:0.34, G:0.02, T:0.18
Consensus pattern (23 bp):
AACCCAAAATCCCCAAATTCAAC
Found at i:14744799 original size:59 final size:59
Alignment explanation
Indices: 14744690--14744829 Score: 169
Period size: 59 Copynumber: 2.4 Consensus size: 59
14744680 TAAATACTCG
* * * * * *
14744690 AGGGGTAAAATGGTACTTTTTGGTGACATCGGGGTTTAAAACAGAATTTTAGAGAGTTC
1 AGGGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTCAAAACAGAATTTTAGAAAGTTC
* *
14744749 AGGGGTAAAATGGTAATTCTTGGTAAAATCGAGG-TCAAAA-ATGAAGTTTTAGAAAGTTT
1 AGGGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTCAAAACA-GAA-TTTTAGAAAGTTC
14744808 AGGGGT-AAATGGTAATTTTTGG
1 AGGGGTAAAATGGTAATTTTTGG
14744830 AAGTTTCGAG
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
57 1 0.01
58 23 0.33
59 46 0.66
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.32
Consensus pattern (59 bp):
AGGGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTCAAAACAGAATTTTAGAAAGTTC
Found at i:14744839 original size:58 final size:58
Alignment explanation
Indices: 14744734--14744895 Score: 172
Period size: 59 Copynumber: 2.8 Consensus size: 58
14744724 TTTAAAACAG
* * * **
14744734 AATTTTAGAGAGTTCAGGGGTAAAATGGTAATTCTTGGTAA-AATCGAGGTCAAAAATG-
1 AATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGG-AAGTTTCGAGGT-AAAAATGT
14744792 AAGTTTTAGAAAGTTTAGGGGT-AAATGGTAATTTTTGGAAGTTTCGAGGTAAAAATGT
1 AA-TTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTAAAAATGT
*
14744850 AATTTTAGGAAGTTTTTA-GGGTCAAAAT-GTAATTTTTGAGAAGTTT
1 AATTTTAGAAAG--TTTAGGGGT-AAAATGGTAATTTTTG-GAAGTTT
14744896 AGGGGTTAAA
Statistics
Matches: 90, Mismatches: 6, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
57 18 0.20
58 30 0.33
59 31 0.34
60 11 0.12
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (58 bp):
AATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTAAAAATGT
Found at i:14744852 original size:29 final size:29
Alignment explanation
Indices: 14744779--14744926 Score: 115
Period size: 30 Copynumber: 5.0 Consensus size: 29
14744769 TGGTAAAATC
* *
14744779 GAGGTCAAAAATG-AAGTTTTAGAAAGTTTA
1 GAGGT-AAAAATGTAA-TTTTTGGAAGTTTA
* *
14744809 GGGGT--AAATGGTAATTTTTGGAAGTTTC
1 GAGGTAAAAAT-GTAATTTTTGGAAGTTTA
*
14744837 GAGGTAAAAATGTAATTTTAGGAAGTTTTTA
1 GAGGTAAAAATGTAATTTTTGGAAG--TTTA
*
14744868 G-GGTCAAAATGTAATTTTTGAGAAGTTTA
1 GAGGTAAAAATGTAATTTTTG-GAAGTTTA
* * * *
14744897 GGGGTTAAAGTATAATTTTTGGATAGTTTA
1 GAGGTAAAAATGTAATTTTTGGA-AGTTTA
14744927 AGGGCTTTCA
Statistics
Matches: 97, Mismatches: 12, Indels: 18
0.76 0.09 0.14
Matches are distributed among these distances:
27 4 0.04
28 16 0.16
29 22 0.23
30 47 0.48
31 8 0.08
ACGTcount: A:0.34, C:0.02, G:0.26, T:0.38
Consensus pattern (29 bp):
GAGGTAAAAATGTAATTTTTGGAAGTTTA
Found at i:14744926 original size:30 final size:29
Alignment explanation
Indices: 14744802--14744926 Score: 121
Period size: 30 Copynumber: 4.2 Consensus size: 29
14744792 AAGTTTTAGA
14744802 AAGTTTAGGGG-T-AAATGGTAATTTTTGG
1 AAGTTTAGGGGTTAAAAT-GTAATTTTTGG
* * * *
14744830 AAGTTTCGAGGTAAAAATGTAATTTTAGG
1 AAGTTTAGGGGTTAAAATGTAATTTTTGG
*
14744859 AAGTTTTTA-GGGTCAAAATGTAATTTTTGAG
1 AAG--TTTAGGGGTTAAAATGTAATTTTTG-G
* *
14744890 AAGTTTAGGGGTTAAAGTATAATTTTTGG
1 AAGTTTAGGGGTTAAAATGTAATTTTTGG
14744919 ATAGTTTA
1 A-AGTTTA
14744927 AGGGCTTTCA
Statistics
Matches: 79, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
28 9 0.11
29 19 0.24
30 44 0.56
31 7 0.09
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.40
Consensus pattern (29 bp):
AAGTTTAGGGGTTAAAATGTAATTTTTGG
Found at i:14746870 original size:17 final size:17
Alignment explanation
Indices: 14746850--14746891 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
14746840 AAATTTTATG
*
14746850 TAAATTTAAATTCAAAA
1 TAAATTTAAATTAAAAA
*
14746867 TAAATTTAATTTAAAAA
1 TAAATTTAAATTAAAAA
14746884 TAAATTTA
1 TAAATTTA
14746892 TATCCCATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAATTTAAATTAAAAA
Found at i:14747842 original size:198 final size:198
Alignment explanation
Indices: 14747232--14747951 Score: 1046
Period size: 198 Copynumber: 3.6 Consensus size: 198
14747222 GTTTCGTTGA
* *
14747232 CTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGCATTGAGCGTT
1 CTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTTGCTCGCATTGAGCGTT
* * * * *
14747297 G-GTTTGATTTGTTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCGCCTTAATTGTTTTAATTC
66 GAG-TTGA--TATACTTC-TCT--GTATCTCATCAGGAAGATGACCGCCTCAA-TGTTTTAATTC
*
14747361 GCTTCTCTGGATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAA
124 GCTTCTCTGGATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAA
14747426 CCATTTTATTG
189 CC-TTTTATTG
* * * *
14747437 CTTCAACCTACTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGCGTTGAGCGTT
1 CTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTTGCTCGCATTGAGCGTT
* * * ** *
14747502 GAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGATCGCCTCGCTTGTTTCAATTCGCTTCT
66 GAGTTGATATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTC-AATGTTTTAATTCGCTTCT
* * * *
14747567 TTGGATCTCCTCAGGAAGACAAATTTGGTCCACCTCTTTGTGTCTCATCAGGAAGCTAACCTTTT
130 CTGGATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTT
14747632 ATTG
195 ATTG
* *
14747636 CTTCGACCTGTTTCTCAGTGTCTCATCAGGAAGCTGGGTTCAAAAATTTGCTCGCATTGAGCGTT
1 CTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTTGCTCGCATTGAGCGTT
*
14747701 GAGTTGATATACTTCTTTGTATCTCATCAGGAAGATGACCGCCTCAATGTTTTAATTCGCTTCTC
66 GAGTTGATATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCAATGTTTTAATTCGCTTCTC
* *
14747766 TGGATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGCCTCATCAGAAAGCTAACCTTTTA
131 TGGATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTA
14747831 TTG
196 TTG
* * * *
14747834 CTTCGACCTGCTTCTCAGTGGCTCATCAAGAAGCTGGGTTCGAAAATTTGCTCACATTGAACGTT
1 CTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTTGCTCGCATTGAGCGTT
* * *
14747899 GAGTTGGTATACTTCTCTGTGTCTCATCAGGAAGATGACCGCCTTAATGTTTT
66 GAGTTGATATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCAATGTTTT
14747952 GTTGAACTAC
Statistics
Matches: 468, Mismatches: 45, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
198 187 0.40
199 108 0.23
200 97 0.21
202 3 0.01
203 7 0.01
205 65 0.14
206 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (198 bp):
CTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTTGCTCGCATTGAGCGTT
GAGTTGATATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCAATGTTTTAATTCGCTTCTC
TGGATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTA
TTG
Found at i:14748872 original size:44 final size:43
Alignment explanation
Indices: 14748824--14748973 Score: 129
Period size: 44 Copynumber: 3.4 Consensus size: 43
14748814 TGAGCCGCCC
*
14748824 TTTGCGGGTTTTCAACTCAAAATTCCCTTGGTTCCAGGATGCCT
1 TTTGCGGGTTTTCATCTCAAAATTCCCTTGGTTCCA-GATGCCT
* ** *** ** *
14748868 TTTGCGGGTTTTCATCGTGAACCTTTTTTTTTGAATCGAGATGCCT
1 TTTGCGGGTTTTCATC-TCAA--AATTCCCTTGGTTCCAGATGCCT
* * *
14748914 TTTGCGGGTTTTCATCTCAAAATTCCCTTGGTTTCAAGACGCCC
1 TTTGCGGGTTTTCATCTCAAAATTCCCTTGG-TTCCAGATGCCT
*
14748958 TTCGCGGGTTTTCATC
1 TTTGCGGGTTTTCATC
14748974 GTGAACCTTT
Statistics
Matches: 80, Mismatches: 22, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
43 5 0.06
44 38 0.47
45 6 0.08
46 23 0.29
47 8 0.10
ACGTcount: A:0.16, C:0.23, G:0.21, T:0.40
Consensus pattern (43 bp):
TTTGCGGGTTTTCATCTCAAAATTCCCTTGGTTCCAGATGCCT
Found at i:14748920 original size:46 final size:46
Alignment explanation
Indices: 14748864--14749019 Score: 172
Period size: 46 Copynumber: 3.4 Consensus size: 46
14748854 GTTCCAGGAT
*
14748864 GCCTTTTGCGGGTTTTCATCGTGAACCTTTTTTTTTGAATCGAGAT
1 GCCTTTTGCGGGTTTTCATCGTGAACCTTTTTTTTTGAATCGAGAC
* ** *** * ** *
14748910 GCCTTTTGCGGGTTTTCATC-TCAA-AATTCCCTTGGTTTCAAGAC
1 GCCTTTTGCGGGTTTTCATCGTGAACCTTTTTTTTTGAATCGAGAC
* *
14748954 GCCCTTCGCGGGTTTTCATCGTGAACCTTTTTTTTTGAATCGAGAC
1 GCCTTTTGCGGGTTTTCATCGTGAACCTTTTTTTTTGAATCGAGAC
*
14749000 GCCTTTTGCGAGTTTTCATC
1 GCCTTTTGCGGGTTTTCATC
14749020 TCAAATCTCC
Statistics
Matches: 82, Mismatches: 26, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
44 28 0.34
45 6 0.07
46 48 0.59
ACGTcount: A:0.15, C:0.22, G:0.21, T:0.42
Consensus pattern (46 bp):
GCCTTTTGCGGGTTTTCATCGTGAACCTTTTTTTTTGAATCGAGAC
Found at i:14748977 original size:90 final size:90
Alignment explanation
Indices: 14748819--14749032 Score: 331
Period size: 90 Copynumber: 2.4 Consensus size: 90
14748809 GGGTTTGAGC
* * * * * *
14748819 CGCCCTTTGCGGGTTTTCAACTCAAAATTCCCTTGGTTCCAGGATGCCTTTTGCGGGTTTTCATC
1 CGCCTTTTGCGGGTTTTCATCTCAAAATTCCCTTGGTTCCAAGACGCCCTTCGCGGGTTTTCATC
14748884 GTGAACCTTTTTTTTTGAATCGAGA
66 GTGAACCTTTTTTTTTGAATCGAGA
* *
14748909 TGCCTTTTGCGGGTTTTCATCTCAAAATTCCCTTGGTTTCAAGACGCCCTTCGCGGGTTTTCATC
1 CGCCTTTTGCGGGTTTTCATCTCAAAATTCCCTTGGTTCCAAGACGCCCTTCGCGGGTTTTCATC
14748974 GTGAACCTTTTTTTTTGAATCGAGA
66 GTGAACCTTTTTTTTTGAATCGAGA
*
14748999 CGCCTTTTGCGAGTTTTCATCTC-AAATCTCCCTT
1 CGCCTTTTGCGGGTTTTCATCTCAAAAT-TCCCTT
14749033 TTTTTTAGGT
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
89 4 0.04
90 109 0.96
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40
Consensus pattern (90 bp):
CGCCTTTTGCGGGTTTTCATCTCAAAATTCCCTTGGTTCCAAGACGCCCTTCGCGGGTTTTCATC
GTGAACCTTTTTTTTTGAATCGAGA
Found at i:14760150 original size:59 final size:59
Alignment explanation
Indices: 14760043--14760526 Score: 549
Period size: 59 Copynumber: 8.3 Consensus size: 59
14760033 GATATCCGAG
* * * * * * * * *
14760043 GGGTAAAAT-GTACTTTTTGGTGACATCGGGGTTTAAAATAGAATTTTAGAGAGTTTGG
1 GGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTGA
* * * * *
14760101 GGGT-AAATGGTAATTTTCGAATAAAATCGAGGTTAAAAATGGAATTTTAGAGAGTTCGA
1 GGGTAAAATGGTAATTTTTG-GTAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTGA
* * * * *
14760160 GGGTAAAATGGTAATTTTTGGTAAAATCAAGGTCAAAAATAGAATTTTGGATAGTTCGA
1 GGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTGA
*
14760219 GGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAAT-GAAGTTTTGGAAAGTTTGG
1 GGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAA-TTTTGGAAAGTTTGA
* *
14760278 GGGT-AAATGGTAA-TTTTGGTAAAATCGAGGTTAAAAATGGAGTTTTAGAAAGTTT-A
1 GGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTGA
* * *
14760334 GGGGTAAAATGGTAATTTTTAGTAAAAT-TAGGGTTAAAAATGAAATTTTGGAAAGTTTGA
1 -GGGTAAAATGGTAATTTTTGGTAAAATCGA-GGTTAAAAATGGAATTTTGGAAAGTTTGA
* * * *
14760394 GGGT-AAATGGTATTTTTTGATAAAATC-AGGGTT-AAAATGGAATTTTGAAAAGTTTAA
1 GGGTAAAATGGTAATTTTTGGTAAAATCGA-GGTTAAAAATGGAATTTTGGAAAGTTTGA
* * * *
14760451 GGGTAAAATGGCAATTTTTGGTAAAATCGGGGTTAAAAATGAAATTTTGGAAAGTTTGG
1 GGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTGA
14760510 GGGTAAAAT-GTAATTTT
1 GGGTAAAATGGTAATTTT
14760527 AAGAAGTTTT
Statistics
Matches: 367, Mismatches: 45, Indels: 28
0.83 0.10 0.06
Matches are distributed among these distances:
57 70 0.19
58 92 0.25
59 190 0.52
60 15 0.04
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTGA
Found at i:14760226 original size:29 final size:29
Alignment explanation
Indices: 14760127--14760526 Score: 93
Period size: 29 Copynumber: 13.8 Consensus size: 29
14760117 TCGAATAAAA
* * *
14760127 TCGAGGTTAAAAATGGAATTTTAGAGAGT
1 TCGAGGGTAAAAATGGAATTTTGGATAGT
**
14760156 TCGAGGGT-AAAATGGTAATTTTTGG-TAAAA
1 TCGAGGGTAAAAATGG-AA-TTTTGGAT-AGT
* *
14760186 TC-AAGGTCAAAAATAGAATTTTGGATAGT
1 TCGAGGGT-AAAAATGGAATTTTGGATAGT
**
14760215 TCGAGGGT-AAAATGGTAATTTTTGG-TAAAA
1 TCGAGGGTAAAAATGG-AA-TTTTGGAT-AGT
* *
14760245 TCGAGGTTAAAAAT-GAAGTTTTGGAAAGT
1 TCGAGGGTAAAAATGGAA-TTTTGGATAGT
* * **
14760274 TTGGGGGT--AAATGGTAATTTTGG-TAAAA
1 TCGAGGGTAAAAATGG-AATTTTGGAT-AGT
* * * *
14760302 TCGAGGTTAAAAATGGAGTTTTAGAAAGT
1 TCGAGGGTAAAAATGGAATTTTGGATAGT
* * * *
14760331 T-TAGGGGT-AAAATGGTAATTTTTAGTAAAAT
1 TCGA-GGGTAAAAATGG-AA-TTTT-GGATAGT
* *
14760362 T--AGGGTTAAAAATGAAATTTTGGAAAGT
1 TCGAGGG-TAAAAATGGAATTTTGGATAGT
* * * **
14760390 TTGAGGGT--AAATGGTATTTTTTGATAAAA
1 TCGAGGGTAAAAATGG-AATTTTGGAT-AGT
* * *
14760419 TC-AGGGTTAAAATGGAATTTTGAAAAGT
1 TCGAGGGTAAAAATGGAATTTTGGATAGT
** **
14760447 TTAAGGGT-AAAATGGCAATTTTTGG-TAAAA
1 TCGAGGGTAAAAATGG-AA-TTTTGGAT-AGT
* *
14760477 TCG-GGGTTAAAAATGAAATTTTGGAAAGT
1 TCGAGGG-TAAAAATGGAATTTTGGATAGT
* * *
14760506 TTGGGGGT-AAAATGTAATTTT
1 TCGAGGGTAAAAATGGAATTTT
14760527 AAGAAGTTTT
Statistics
Matches: 266, Mismatches: 67, Indels: 77
0.65 0.16 0.19
Matches are distributed among these distances:
27 9 0.03
28 73 0.27
29 89 0.33
30 67 0.25
31 28 0.11
ACGTcount: A:0.38, C:0.03, G:0.26, T:0.34
Consensus pattern (29 bp):
TCGAGGGTAAAAATGGAATTTTGGATAGT
Found at i:14760343 original size:116 final size:117
Alignment explanation
Indices: 14760043--14760526 Score: 547
Period size: 116 Copynumber: 4.2 Consensus size: 117
14760033 GATATCCGAG
* * * * * * *
14760043 GGGTAAAAT-GTACTTTTTGGTGACATCGGGGTTTAAAATAGAATTTTAGAGAGTTTGGGGGT-A
1 GGGTAAAATGGTA-ATTTTGGTAAAATCGAGGTTAAAAATAGAATTTTAGAAAGTTTAGGGGTAA
* * * * * *
14760106 AATGGTAATTTTCGAATAAAATCGAGGTTAAAAATGGAATTTTAGAGAGTTCGA
65 AATGGTAATTTTTG-GTAAAATCGAGGTTAAAAATGAAATTTTGGAAAGTTTGA
* * * * *
14760160 GGGTAAAATGGTAATTTTTGGTAAAATCAAGGTCAAAAATAGAATTTTGGATAG-TTCGAGGGTA
1 GGGTAAAATGGTAA-TTTTGGTAAAATCGAGGTTAAAAATAGAATTTTAGAAAGTTTAG-GGGTA
* *
14760224 AAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGAAGTTTTGGAAAGTTTGG
64 AAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGAAATTTTGGAAAGTTTGA
* *
14760278 GGGT-AAATGGTAATTTTGGTAAAATCGAGGTTAAAAATGGAGTTTTAGAAAGTTTAGGGGTAAA
1 GGGTAAAATGGTAATTTTGGTAAAATCGAGGTTAAAAATAGAATTTTAGAAAGTTTAGGGGTAAA
* *
14760342 ATGGTAATTTTTAGTAAAAT-TAGGGTTAAAAATGAAATTTTGGAAAGTTTGA
66 ATGGTAATTTTTGGTAAAATCGA-GGTTAAAAATGAAATTTTGGAAAGTTTGA
* * * *
14760394 GGGT-AAATGGTATTTTTTGATAAAATC-AGGGTT-AAAATGGAATTTT-GAAAAGTTTAAGGGT
1 GGGTAAAATGGTA-ATTTTGGTAAAATCGA-GGTTAAAAATAGAATTTTAG-AAAGTTTAGGGGT
* * *
14760455 AAAATGGCAATTTTTGGTAAAATCGGGGTTAAAAATGAAATTTTGGAAAGTTTGG
63 AAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGAAATTTTGGAAAGTTTGA
14760510 GGGTAAAAT-GTAATTTT
1 GGGTAAAATGGTAATTTT
14760527 AAGAAGTTTT
Statistics
Matches: 317, Mismatches: 39, Indels: 24
0.83 0.10 0.06
Matches are distributed among these distances:
115 6 0.02
116 179 0.56
117 44 0.14
118 74 0.23
119 14 0.04
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (117 bp):
GGGTAAAATGGTAATTTTGGTAAAATCGAGGTTAAAAATAGAATTTTAGAAAGTTTAGGGGTAAA
ATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGAAATTTTGGAAAGTTTGA
Found at i:14771405 original size:29 final size:29
Alignment explanation
Indices: 14771373--14771435 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
14771363 AAGAAATCAT
*
14771373 ATTTTAACCCCAAAACTT-TAGAAAATTAC
1 ATTTTAACCCCAAAACTTCCA-AAAATTAC
**
14771402 ATTTTAACCCTGAAACTTCCAAAAATTAC
1 ATTTTAACCCCAAAACTTCCAAAAATTAC
14771431 ATTTT
1 ATTTT
14771436 TACTCTCGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 29 0.97
30 1 0.03
ACGTcount: A:0.41, C:0.21, G:0.03, T:0.35
Consensus pattern (29 bp):
ATTTTAACCCCAAAACTTCCAAAAATTAC
Found at i:14771455 original size:29 final size:28
Alignment explanation
Indices: 14771394--14771669 Score: 140
Period size: 29 Copynumber: 9.5 Consensus size: 28
14771384 AAAACTTTAG
* **
14771394 AAAATTACATTTTAACC-CTGAAACTTCC
1 AAAATTACATTTTTACCTC-GAATTTTCC
14771422 AAAAATTACATTTTTACTCTCGAATTTTCC
1 -AAAATTACATTTTTAC-CTCGAATTTTCC
* *
14771452 AAAATTCCATTTTTAACC-CGAATTTCACC
1 AAAATTACATTTTT-ACCTCGAATTT-TCC
* *
14771481 AAAAATTACCA-TTTTACCCCCGAACTTTCC
1 -AAAATTA-CATTTTTA-CCTCGAATTTTCC
* * * *
14771511 TAAATTCCATTTTAACC-CTAATTTTACC
1 AAAATTACATTTTTACCTCGAATTTT-CC
* *
14771539 AAAATTACCA-TTTTACTCCCGAATCTTCC
1 AAAATTA-CATTTTTAC-CTCGAATTTTCC
* *
14771568 AAAATTCCATTTTTAACCTCG-ATTTCACC
1 AAAATTACATTTTT-ACCTCGAATTT-TCC
* *
14771597 AAAATTACCA-TTTTACCCTCAAACTTTCC
1 AAAATTA-CATTTTTA-CCTCGAATTTTCC
*
14771626 AAAACCTTAC-TTTTAACCTCG-A-TTTCAC
1 AAAA--TTACATTTTTACCTCGAATTTTC-C
14771654 TAAAAATTACATTTTT
1 --AAAATTACATTTTT
14771670 GCCCCCCGAG
Statistics
Matches: 192, Mismatches: 29, Indels: 52
0.70 0.11 0.19
Matches are distributed among these distances:
27 10 0.05
28 35 0.18
29 89 0.46
30 46 0.24
31 12 0.06
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (28 bp):
AAAATTACATTTTTACCTCGAATTTTCC
Found at i:14771456 original size:58 final size:60
Alignment explanation
Indices: 14771394--14771629 Score: 246
Period size: 58 Copynumber: 4.1 Consensus size: 60
14771384 AAAACTTTAG
* * *
14771394 AAAATTACA-TTTTAACCCTGAAACTT-CCAAAAATTA-CATTTTTACTCTCGAATTTTCC
1 AAAATTCCATTTTTAACCCTGAAATTTACCAAAAATTACCA-TTTTACTCCCGAATTTTCC
* *
14771452 AAAATTCCATTTTTAACCC-G-AATTTCACCAAAAATTACCATTTTACCCCCGAACTTTCC
1 AAAATTCCATTTTTAACCCTGAAATTT-ACCAAAAATTACCATTTTACTCCCGAATTTTCC
* * *
14771511 TAAATTCCA-TTTTAACCCT-AATTTTACC-AAAATTACCATTTTACTCCCGAATCTTCC
1 AAAATTCCATTTTTAACCCTGAAATTTACCAAAAATTACCATTTTACTCCCGAATTTTCC
* *
14771568 AAAATTCCATTTTTAA-CCTCG--ATTTCACC-AAAATTACCATTTTAC-CCTCAAACTTTCC
1 AAAATTCCATTTTTAACCCT-GAAATTT-ACCAAAAATTACCATTTTACTCC-CGAATTTTCC
14771626 AAAA
1 AAAA
14771630 CCTTACTTTT
Statistics
Matches: 152, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
57 46 0.30
58 57 0.38
59 47 0.31
60 2 0.01
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.36
Consensus pattern (60 bp):
AAAATTCCATTTTTAACCCTGAAATTTACCAAAAATTACCATTTTACTCCCGAATTTTCC
Found at i:14771640 original size:58 final size:54
Alignment explanation
Indices: 14771423--14771668 Score: 210
Period size: 58 Copynumber: 4.3 Consensus size: 54
14771413 GAAACTTCCA
* * *
14771423 AAAATTA-CATTTTTACTCTCGAATTTTCCAAAATTCCATTTTTAACCCGAATTTCACC
1 AAAATTACCA-TTTTAC-CCCGAACTTTCCAAAATT--ACTTTTAACCCG-ATTTCACC
* * * *
14771481 AAAAATTACCATTTTACCCCCGAACTTTCCTAAATTCCATTTTAACCCTAATTTTACC
1 -AAAATTACCATTTTA-CCCCGAACTTTCCAAAATTAC-TTTTAACCC-GATTTCACC
*
14771539 AAAATTACCATTTTACTCCCGAA-TCTTCCAAAATTCCATTTTTAACCTCGATTTCACC
1 AAAATTACCATTTTAC-CCCGAACT-TTCCAAAATT--ACTTTTAACC-CGATTTCACC
* *
14771597 AAAATTACCATTTTACCCTCAAACTTTCCAAAACCTTACTTTTAACCTCGATTTCACTA
1 AAAATTACCATTTTACCC-CGAACTTTCCAAAA--TTACTTTTAACC-CGATTTCAC-C
14771656 AAAATTA-CATTTT
1 AAAATTACCATTTT
14771669 TGCCCCCCGA
Statistics
Matches: 158, Mismatches: 15, Indels: 29
0.78 0.07 0.14
Matches are distributed among these distances:
56 2 0.01
57 32 0.20
58 83 0.53
59 36 0.23
60 5 0.03
ACGTcount: A:0.33, C:0.27, G:0.02, T:0.37
Consensus pattern (54 bp):
AAAATTACCATTTTACCCCGAACTTTCCAAAATTACTTTTAACCCGATTTCACC
Found at i:14771667 original size:116 final size:115
Alignment explanation
Indices: 14771373--14771668 Score: 350
Period size: 116 Copynumber: 2.5 Consensus size: 115
14771363 AAGAAATCAT
* ** *
14771373 ATTTTAACCCCAAAACTTTAGAAAATTACATTTTAACCCTGAAACTTC-CAAAAATTACATTTTT
1 ATTTT-ACCCCCAAACTTTCCAAAATTACATTTTAACCCT--AATTTCACAAAAATTACA-TTTT
* *
14771437 ACTCTCGAATTTTCCAAAATTCCATTTTTAACCCGAATTTCACCAAAAATTACC
62 ACTCCCGAATCTTCCAAAATTCCATTTTTAACCCGAATTTCACCAAAAATTACC
* * * * *
14771491 ATTTTACCCCCGAACTTTCCTAAATTCCATTTTAACCCTAATTTTACCAAAATTACCATTTTACT
1 ATTTTACCCCCAAACTTTCCAAAATTACATTTTAACCCTAATTTCACAAAAATTA-CATTTTACT
14771556 CCCGAATCTTCCAAAATTCCATTTTTAACCTCG-ATTTCACC-AAAATTACC
65 CCCGAATCTTCCAAAATTCCATTTTTAACC-CGAATTTCACCAAAAATTACC
* *
14771606 ATTTTACCCTCAAACTTTCCAAAACCTTAC-TTTTAA-CCTCGATTTCACTAAAAATTACATTTT
1 ATTTTACCCCCAAACTTTCCAAAA--TTACATTTTAACCCT-AATTTCAC-AAAAATTACATTTT
14771669 TGCCCCCCGA
Statistics
Matches: 153, Mismatches: 18, Indels: 16
0.82 0.10 0.09
Matches are distributed among these distances:
115 37 0.24
116 69 0.45
117 42 0.27
118 5 0.03
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.36
Consensus pattern (115 bp):
ATTTTACCCCCAAACTTTCCAAAATTACATTTTAACCCTAATTTCACAAAAATTACATTTTACTC
CCGAATCTTCCAAAATTCCATTTTTAACCCGAATTTCACCAAAAATTACC
Found at i:14779030 original size:31 final size:32
Alignment explanation
Indices: 14778995--14779055 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
14778985 GTACATTTGA
14778995 TCCTTCCATATTTTTAA-TTATTTCAATTTAG
1 TCCTTCCATATTTTTAATTTATTTCAATTTAG
***
14779026 TCCTTTTGTATTTTTAATTTATTTCAATTT
1 TCCTTCCATATTTTTAATTTATTTCAATTT
14779056 GACCCTGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 14 0.54
32 12 0.46
ACGTcount: A:0.23, C:0.13, G:0.03, T:0.61
Consensus pattern (32 bp):
TCCTTCCATATTTTTAATTTATTTCAATTTAG
Found at i:14779392 original size:29 final size:28
Alignment explanation
Indices: 14779322--14779407 Score: 82
Period size: 29 Copynumber: 3.0 Consensus size: 28
14779312 ATGGGCCCCT
* *
14779322 AAACTATCCAAAAATCACATTTTAACCCT
1 AAAC-ATCCAAAAATTACATTTTAACCCG
* **
14779351 AAAGCTTAAAAAAATTACATTTTAACCTCG
1 AAA-CATCCAAAAATTACATTTTAACC-CG
* *
14779381 AAACATCCAAAAATTATATTTTTACCC
1 AAACATCCAAAAATTACATTTTAACCC
14779408 TCAAATTTTC
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
28 1 0.02
29 39 0.87
30 5 0.11
ACGTcount: A:0.45, C:0.22, G:0.02, T:0.30
Consensus pattern (28 bp):
AAACATCCAAAAATTACATTTTAACCCG
Found at i:14779449 original size:29 final size:27
Alignment explanation
Indices: 14779398--14779628 Score: 105
Period size: 29 Copynumber: 7.9 Consensus size: 27
14779388 CAAAAATTAT
* *
14779398 ATTTTTACCCTCAAATTTTCCAAAATTCC
1 ATTTTTACCC-C-GATTTACCAAAATTCC
14779427 ATTTTTTACCCCGATTTCACCAAAAATTACC
1 A-TTTTTACCCCGATTT-ACC-AAAATT-CC
* **
14779458 A-TTTTACCCCCAAACTTT-CTTAAATTCC
1 ATTTTTA-CCCC-GA-TTTACCAAAATTCC
* *
14779486 ATTTTAACCCCTATTTTTAACCAAAATTACC
1 ATTTTTACCCCGA--TTT-ACCAAAATT-CC
*
14779517 A-TTTTACCCCCGAATCTT-CCAAAAATCC
1 ATTTTTA-CCCCG-AT-TTACCAAAATTCC
* * *
14779545 ATTTTTGACCTCGATTTCACTAAAATTAC
1 ATTTTT-ACCCCGATTT-ACCAAAATTCC
14779574 A-TTTTACCCTCGAATCTT-CCAAAATTCC
1 ATTTTTACCC-CG-AT-TTACCAAAATTCC
*
14779602 ATTTTTGACCCCGATTACACCAAAATT
1 ATTTTT-ACCCCGATT-TACCAAAATT
14779629 ACCGTTTTAC
Statistics
Matches: 155, Mismatches: 21, Indels: 52
0.68 0.09 0.23
Matches are distributed among these distances:
27 7 0.05
28 36 0.23
29 57 0.37
30 38 0.25
31 13 0.08
32 4 0.03
ACGTcount: A:0.32, C:0.29, G:0.03, T:0.37
Consensus pattern (27 bp):
ATTTTTACCCCGATTTACCAAAATTCC
Found at i:14779465 original size:59 final size:59
Alignment explanation
Indices: 14779387--14779729 Score: 299
Period size: 59 Copynumber: 5.9 Consensus size: 59
14779377 CTCGAAACAT
* *
14779387 CCAAAAATTA-TATTTTTACCCTCAAATTTTCCAAAATTCCATTTTTTACCCCGATTTCA
1 CCAAAAATTACCA-TTTTACCCTCAAATTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * ** * *
14779446 CCAAAAATTACCATTTTACCCCCAAACTTTCTTAAATTCCA-TTTTAACCCCTATTTTTAA
1 CCAAAAATTACCATTTTACCCTCAAATTTTCCAAAATTCCATTTTTAACCCCGA--TTTCA
* * * * * *
14779506 CC-AAAATTACCATTTTACCCCCGAATCTTCCAAAAATCCATTTTTGACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCTCAAATTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * * *
14779564 -CTAAAATTA-CATTTTACCCTCGAATCTTCCAAAATTCCATTTTTGACCCCGATTACA
1 CCAAAAATTACCATTTTACCCTCAAATTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * * *
14779621 CC-AAAATTACCGTTTTACCTTTAAACTTTCCAAAA--CCTTATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCTCAAATTTTCCAAAATTCC--ATTTTTAACCCCGATTTCA
* * * * ** *
14779679 CTAAAAATTATCATTTTACCCCCGAACCTTCTAAAATT-CATTTTTAACCCC
1 CCAAAAATTACCATTTTACCCTCAAATTTTCCAAAATTCCATTTTTAACCCC
14779730 AAATTTTTCC
Statistics
Matches: 231, Mismatches: 41, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
56 2 0.01
57 52 0.23
58 69 0.30
59 91 0.39
60 17 0.07
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCTCAAATTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:14779722 original size:58 final size:58
Alignment explanation
Indices: 14779415--14779729 Score: 298
Period size: 58 Copynumber: 5.4 Consensus size: 58
14779405 CCCTCAAATT
* * *
14779415 TTCCAAAATTCCATTTTTTACCCCGATTTCACCAAAAATTACCATTTTACCCCCAAACT
1 TTCCAAAATTCCATTTTTAACCCCGATTTCA-CAAAAATTACCATTTTACCCCCGAACC
** * * * *
14779474 TTCTTAAATTCCA-TTTTAACCCCTATTTTTAACCAAAATTACCATTTTACCCCCGAATC
1 TTCCAAAATTCCATTTTTAACCCCGA--TTTCACAAAAATTACCATTTTACCCCCGAACC
* * * * * *
14779533 TTCCAAAAATCCATTTTTGACCTCGATTTCACTAAAATTA-CATTTTACCCTCGAATC
1 TTCCAAAATTCCATTTTTAACCCCGATTTCACAAAAATTACCATTTTACCCCCGAACC
* * * * **** *
14779590 TTCCAAAATTCCATTTTTGACCCCGATTACACCAAAATTACCGTTTTACCTTTAAACT
1 TTCCAAAATTCCATTTTTAACCCCGATTTCACAAAAATTACCATTTTACCCCCGAACC
* *
14779648 TTCCAAAA--CCTTATTTTTAACCTCGATTTCACTAAAAATTATCATTTTACCCCCGAACC
1 TTCCAAAATTCC--ATTTTTAACCCCGATTTCAC-AAAAATTACCATTTTACCCCCGAACC
*
14779707 TTCTAAAATT-CATTTTTAACCCC
1 TTCCAAAATTCCATTTTTAACCCC
14779730 AAATTTTTCC
Statistics
Matches: 206, Mismatches: 41, Indels: 19
0.77 0.15 0.07
Matches are distributed among these distances:
56 2 0.01
57 52 0.25
58 69 0.33
59 69 0.33
60 14 0.07
ACGTcount: A:0.31, C:0.29, G:0.03, T:0.37
Consensus pattern (58 bp):
TTCCAAAATTCCATTTTTAACCCCGATTTCACAAAAATTACCATTTTACCCCCGAACC
Found at i:14781285 original size:21 final size:22
Alignment explanation
Indices: 14781245--14781286 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
14781235 CCCTATATTA
14781245 TGCATATTATGTTTGCGGATGAT
1 TGCATATTA-GTTTGCGGATGAT
*
14781268 TGCATATTA-TTTGGGGATG
1 TGCATATTAGTTTGCGGATG
14781287 CTAATGCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
23 9 0.50
ACGTcount: A:0.21, C:0.07, G:0.29, T:0.43
Consensus pattern (22 bp):
TGCATATTAGTTTGCGGATGAT
Found at i:14786540 original size:21 final size:22
Alignment explanation
Indices: 14786516--14786576 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
14786506 CGATCTAAGA
*
14786516 AAAAATAAAAGAAACT-GAATT
1 AAAAATAAAAGAAAATAGAATT
14786537 AAAAATAAAAGAAAATAGAATT
1 AAAAATAAAAGAAAATAGAATT
*
14786559 AAAAGA-AATAGAAAATAG
1 AAAA-ATAAAAGAAAATAG
14786577 GGAAGTCGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
21 15 0.42
22 20 0.56
23 1 0.03
ACGTcount: A:0.70, C:0.02, G:0.11, T:0.16
Consensus pattern (22 bp):
AAAAATAAAAGAAAATAGAATT
Found at i:14786569 original size:15 final size:16
Alignment explanation
Indices: 14786542--14786571 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14786532 GAATTAAAAA
14786542 TAAAAGAAAATAGAAT
1 TAAAAGAAAATAGAAT
14786558 TAAAAG-AAATAGAA
1 TAAAAGAAAATAGAA
14786572 AATAGGGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (16 bp):
TAAAAGAAAATAGAAT
Found at i:14788196 original size:107 final size:107
Alignment explanation
Indices: 14788003--14788200 Score: 242
Period size: 107 Copynumber: 1.9 Consensus size: 107
14787993 ATACATTGGA
* * * *
14788003 CCTTTTGACGCGAAATGAAATGACACCCAAGCACTCCATCCCGGTTACTCAGCCCAACATGCTCT
1 CCTTTCGACGCGAAATGAAATGACAACCAAGCACTCCATCCCGATTACTCAGCCAAACATGCTCT
* *
14788068 CAATTTTTTTCTTCTTTTTTTTTTTTTGTAGAATACGTTAAC
66 CAATTTATTTATTCTTTTTTTTTTTTTGTAGAATACGTTAAC
* * *
14788110 CCTTTCGACGCGAAGTGAAATGACAACCAAGCACTCCA-CCCTGATTACTCAGTCTAACACAT-T
1 CCTTTCGACGCGAAATGAAATGACAACCAAGCACTCCATCCC-GATTACTCAG-CCAA-ACATGC
* *
14788173 TCT-GATTTATTTATT-TTTCTTTTTTTTT
63 TCTCAATTTATTTATTCTTTTTTTTTTTTT
14788201 ATTCGGGTTA
Statistics
Matches: 77, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
106 15 0.19
107 53 0.69
108 5 0.06
109 4 0.05
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (107 bp):
CCTTTCGACGCGAAATGAAATGACAACCAAGCACTCCATCCCGATTACTCAGCCAAACATGCTCT
CAATTTATTTATTCTTTTTTTTTTTTTGTAGAATACGTTAAC
Found at i:14788931 original size:13 final size:13
Alignment explanation
Indices: 14788886--14788934 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
14788876 AGTTTCATGG
14788886 ATAAAAATAAATAA
1 ATAAAAATAAA-AA
* *
14788900 AT-AAAATAAGAT
1 ATAAAAATAAAAA
*
14788912 AGAAAAATAAAAA
1 ATAAAAATAAAAA
14788925 ATAAAAATAA
1 ATAAAAATAA
14788935 TTGGGTTGCC
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
12 2 0.07
13 24 0.86
14 2 0.07
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (13 bp):
ATAAAAATAAAAA
Found at i:14795385 original size:19 final size:19
Alignment explanation
Indices: 14795361--14795403 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
14795351 AAACTTAAAT
14795361 TAAATACAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
14795380 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
14795399 TAAAT
1 TAAAT
14795404 CCTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:14796202 original size:31 final size:31
Alignment explanation
Indices: 14796165--14796267 Score: 108
Period size: 31 Copynumber: 3.4 Consensus size: 31
14796155 TCTAAAAAGA
14796165 TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
* * *
14796196 TTAGGTATCAAATTGGGTCAAAAA-----AAAT
1 TTAGGTACCAAATTAGG--AAAAAGTGTCAAGT
*
14796224 TTAGGTATCAAATTAGGAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
*
14796255 TCAGGTACCAAAT
1 TTAGGTACCAAAT
14796268 GTTATATTAA
Statistics
Matches: 58, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
26 5 0.09
28 19 0.33
31 29 0.50
33 5 0.09
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.27
Consensus pattern (31 bp):
TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
Found at i:14796244 original size:59 final size:58
Alignment explanation
Indices: 14796080--14796267 Score: 214
Period size: 58 Copynumber: 3.2 Consensus size: 58
14796070 TAATAAATTT
** * * * * *
14796080 AGGTACCAAATTGAATCTAAAAAAAGCTTACGTACTAAATTAGGAAAAAATGCCAAGTTC
1 AGGTACCAAATTGGGTC-AAAAAAA-ATTAGGTACCAAATTAGGAAAAAGTGTCAAGTTC
* * * * * *
14796140 AAGTGCCAAATTTGGTCTAAAAAGATTAGGTACCAAATTAGGAAAAAGTGTCAAGTTT
1 AGGTACCAAATTGGGTCAAAAAAAATTAGGTACCAAATTAGGAAAAAGTGTCAAGTTC
* *
14796198 AGGTATCAAATTGGGTCAAAAAAAATTTAGGTATCAAATTAGGAAAAAGTGTCAAGTTC
1 AGGTACCAAATTGGGTCAAAAAAAA-TTAGGTACCAAATTAGGAAAAAGTGTCAAGTTC
14796257 AGGTACCAAAT
1 AGGTACCAAAT
14796268 GTTATATTAA
Statistics
Matches: 105, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
58 47 0.45
59 46 0.44
60 12 0.11
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.26
Consensus pattern (58 bp):
AGGTACCAAATTGGGTCAAAAAAAATTAGGTACCAAATTAGGAAAAAGTGTCAAGTTC
Found at i:14797868 original size:9 final size:8
Alignment explanation
Indices: 14797839--14797865 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
14797829 ATTTAAAAAT
14797839 AAATTAAA
1 AAATTAAA
14797847 AAATTAAA
1 AAATTAAA
14797855 AAATTAAA
1 AAATTAAA
14797863 AAA
1 AAA
14797866 ATTTGTTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (8 bp):
AAATTAAA
Found at i:14819417 original size:7 final size:7
Alignment explanation
Indices: 14819405--14819432 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
14819395 CTAAGTTGGC
14819405 TTCAAAA
1 TTCAAAA
14819412 TTCAAAA
1 TTCAAAA
14819419 TTCAAAA
1 TTCAAAA
14819426 TTCAAAA
1 TTCAAAA
14819433 CTTAACCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (7 bp):
TTCAAAA
Found at i:14821150 original size:18 final size:18
Alignment explanation
Indices: 14821118--14821152 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14821108 TCTACCACTT
**
14821118 TTTTTTTTATTTTAATCC
1 TTTTTTTTACCTTAATCC
14821136 TTTTTTTTACCTTAATC
1 TTTTTTTTACCTTAATC
14821153 AGTACTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTTTTACCTTAATCC
Found at i:14825871 original size:17 final size:17
Alignment explanation
Indices: 14825838--14825890 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
14825828 ATTAGAGTTG
* *
14825838 AATTGAAAAAATCATTT
1 AATTGAAAAATTAATTT
14825855 AATTGAAAAATTAATTT
1 AATTGAAAAATTAATTT
* *
14825872 AA--GTAAAATTAATTA
1 AATTGAAAAATTAATTT
14825887 AATT
1 AATT
14825891 AAATAAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
15 13 0.43
17 17 0.57
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.38
Consensus pattern (17 bp):
AATTGAAAAATTAATTT
Found at i:14827040 original size:11 final size:11
Alignment explanation
Indices: 14827024--14827048 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14827014 TTTTTCAAAA
14827024 TTTTATAATTT
1 TTTTATAATTT
14827035 TTTTATAATTT
1 TTTTATAATTT
14827046 TTT
1 TTT
14827049 GAAATTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:14827044 original size:19 final size:19
Alignment explanation
Indices: 14826999--14827046 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
14826989 GATCCCAAAA
*
14826999 TTATTATTTTAGAAATTTT
1 TTATAATTTTAGAAATTTT
* * * *
14827018 TCAAAATTTTATAATTTTT
1 TTATAATTTTAGAAATTTT
14827037 TTATAATTTT
1 TTATAATTTT
14827047 TTGAAATTTG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TTATAATTTTAGAAATTTT
Found at i:14827085 original size:19 final size:20
Alignment explanation
Indices: 14827063--14827102 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14827053 TTTGTATTTA
14827063 TATTTT-AAATTTTAAAAAT
1 TATTTTAAAATTTTAAAAAT
*
14827082 TATTTTAAAATTTTGAAAAT
1 TATTTTAAAATTTTAAAAAT
14827102 T
1 T
14827103 TTTATGAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (20 bp):
TATTTTAAAATTTTAAAAAT
Found at i:14828111 original size:27 final size:27
Alignment explanation
Indices: 14828060--14828114 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
14828050 AAGTTTGACA
* *
14828060 AATTCATATATCAAATTGGACAAAAAT
1 AATTCAAATATCAAATTAGACAAAAAT
*
14828087 AATTCAAATATCAAATTAAGAAAAAAAT
1 AATTCAAATATCAAATT-AGACAAAAAT
14828115 GTTAAGTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.58, C:0.09, G:0.05, T:0.27
Consensus pattern (27 bp):
AATTCAAATATCAAATTAGACAAAAAT
Found at i:14832830 original size:6 final size:6
Alignment explanation
Indices: 14832810--14832874 Score: 62
Period size: 6 Copynumber: 10.8 Consensus size: 6
14832800 TTAAAAGGGT
* * *
14832810 TTTAAA TTT-AT TTTAAA TTTAAA TTTAAA TTTACTCA TTTAAA TTT-AT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA--AA TTTAAA TTTAAA
*
14832858 TTTAAA TTTAAG TTTAA
1 TTTAAA TTTAAA TTTAA
14832875 TCAAATTTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
5 8 0.17
6 35 0.73
8 5 0.10
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:14832851 original size:14 final size:12
Alignment explanation
Indices: 14832810--14832867 Score: 75
Period size: 11 Copynumber: 4.8 Consensus size: 12
14832800 TTAAAAGGGT
14832810 TTTAAATTTAT-
1 TTTAAATTTATA
*
14832821 TTTAAATTTAAA
1 TTTAAATTTATA
14832833 TTTAAATTTACTCA
1 TTTAAATTTA-T-A
14832847 TTTAAATTTAT-
1 TTTAAATTTATA
14832858 TTTAAATTTA
1 TTTAAATTTA
14832868 AGTTTAATCA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
11 20 0.48
12 10 0.24
13 1 0.02
14 11 0.26
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (12 bp):
TTTAAATTTATA
Found at i:14834751 original size:59 final size:59
Alignment explanation
Indices: 14834659--14834975 Score: 446
Period size: 59 Copynumber: 5.4 Consensus size: 59
14834649 CCTGGATGGT
*
14834659 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
14834718 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAA-CTCGGTTTCA
1 CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
14834776 CCAAAAATTACCATTTTACCC-CTAAACTTTCCAAAATTCCATTTTTAACCCC-AGTTTCA
1 CCAAAAATTACCATTTTACCCTC-AAACTTTCCAAAATTCCATTTTTAACCCCGA-TTTCA
* *
14834835 CCAAAAATTACCATTTTATCCCT-AAACTTTCCAAAATTCCATTTTTAACCTCGATTTAA
1 CCAAAAATTACCATTTTA-CCCTCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* ** * *
14834894 CCAAAAATTACTATTTTACCCTTGAATTTTCCAAAATTCTC-TTTTTGACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTC-CATTTTTAACCCCGATTTCA
* *
14834953 TCGAAAATTACCATTTTACCCTC
1 CCAAAAATTACCATTTTACCCTC
14834976 GTGAGTCTAA
Statistics
Matches: 231, Mismatches: 19, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
57 1 0.00
58 57 0.25
59 168 0.73
60 5 0.02
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.36
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:14834865 original size:117 final size:118
Alignment explanation
Indices: 14834659--14834975 Score: 480
Period size: 117 Copynumber: 2.7 Consensus size: 118
14834649 CCTGGATGGT
*
14834659 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAA
* * *
14834724 ATTACCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAA-CTCGGTTTCA
66 ATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTAA
14834776 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCC-AGTTTCACCAAA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGA-TTTCACCAAA
14834840 AATTACCATTTTATCCCT-AAACTTTCCAAAATTCCATTTTTAACCTCGATTTAA
65 AATTACCATTTTA-CCCTCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTAA
* * * * * * *
14834894 CCAAAAATTACTATTTTACCCTTGAATTTTCCAAAATTCTC-TTTTTGACCCCGATTTCATCGAA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTC-CATTTTTAACCCCGATTTCACCAAA
14834958 AATTACCATTTTACCCTC
65 AATTACCATTTTACCCTC
14834976 GTGAGTCTAA
Statistics
Matches: 183, Mismatches: 11, Indels: 11
0.89 0.05 0.05
Matches are distributed among these distances:
116 1 0.01
117 102 0.56
118 78 0.43
119 2 0.01
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.36
Consensus pattern (118 bp):
CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAA
ATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTAA
Found at i:14834928 original size:30 final size:30
Alignment explanation
Indices: 14834658--14834929 Score: 117
Period size: 30 Copynumber: 9.2 Consensus size: 30
14834648 TCCTGGATGG
*** *
14834658 TCCAAAAATTACCATTTTACCCCCAAACTT
1 TCCAAAAATTACCATTTTACCCTTGAATTT
*
14834688 TCC-AAAATT-CCATTTTTAACCC-CG-ATTT
1 TCCAAAAATTACCA-TTTT-ACCCTTGAATTT
* * *
14834716 CACCAAAAATTACCATTTTACCCTCGAACTT
1 -TCCAAAAATTACCATTTTACCCTTGAATTT
* * *
14834747 TCC-AAAATT-CCATTTTTA-ACTCG-GTTT
1 TCCAAAAATTACCA-TTTTACCCTTGAATTT
* * * *
14834774 CACCAAAAATTACCATTTTACCCCTAAACTT
1 -TCCAAAAATTACCATTTTACCCTTGAATTT
* *
14834805 TCC-AAAATT-CCATTTTTAACCC--CAGTTT
1 TCCAAAAATTACCA-TTTT-ACCCTTGAATTT
* * *
14834833 CACCAAAAATTACCATTTTATCCC-TAAACTT
1 -TCCAAAAATTACCATTTTA-CCCTTGAATTT
* *
14834864 TCC-AAAATT-CCATTTTTAACCTCG-ATTT
1 TCCAAAAATTACCA-TTTTACCCTTGAATTT
* *
14834892 AACCAAAAATTACTATTTTACCCTTGAATTT
1 -TCCAAAAATTACCATTTTACCCTTGAATTT
14834923 TCCAAAA
1 TCCAAAA
14834930 TTCTCTTTTT
Statistics
Matches: 183, Mismatches: 33, Indels: 52
0.68 0.12 0.19
Matches are distributed among these distances:
27 2 0.01
28 29 0.16
29 65 0.36
30 67 0.37
31 20 0.11
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.35
Consensus pattern (30 bp):
TCCAAAAATTACCATTTTACCCTTGAATTT
Found at i:14836100 original size:9 final size:9
Alignment explanation
Indices: 14836083--14836113 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14836073 TAGACCGACA
*
14836083 TTTTTAACG
1 TTTTAAACG
14836092 TTTTAAACG
1 TTTTAAACG
14836101 TTTTAAACG
1 TTTTAAACG
14836110 TTTT
1 TTTT
14836114 GAGGTGACTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.26, C:0.10, G:0.10, T:0.55
Consensus pattern (9 bp):
TTTTAAACG
Found at i:14847315 original size:92 final size:92
Alignment explanation
Indices: 14847153--14847881 Score: 1072
Period size: 92 Copynumber: 7.9 Consensus size: 92
14847143 ATCAGATCAA
*
14847153 ACCAACATTATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
* * *
14847218 AAAATTGAAGTAAGAGTGAGAAGAAGG
66 GAAATTGAAGTAAGAGTAAGAAGAAGC
* *
14847245 ACCAACATTATTTTCCTATCCTCTTGAAATTAAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
* *
14847310 GAAATTGAAGTAAGAGTGAGAAGAAGG
66 GAAATTGAAGTAAGAGTAAGAAGAAGC
14847337 ACCAACA-CTATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTC
1 ACCAACATC-ATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTC
* *
14847401 AGAAATTGAAGTAAGAGTAA-AATAAAGC
65 TGAAATTGAAGTAAGAGTAAGAA-GAAGC
* *
14847429 ACCAACATCATTTTCCTATCCTCTTGAGATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCA
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
14847494 GAAATTGAAGTAAGAGTAA-AATGAAGC
66 GAAATTGAAGTAAGAGTAAGAA-GAAGC
* * * *
14847521 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTTAAGGTGGATAACATGCCTTCGTCCCTCA
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
* *
14847586 GAAATTGAAGTAAGAGTAACATGAAGC
66 GAAATTGAAGTAAGAGTAAGAAGAAGC
*
14847613 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTTT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
** * *
14847678 GAAATCAAAATAAGAGTAAGAAGAAGG
66 GAAATTGAAGTAAGAGTAAGAAGAAGC
* * *
14847705 ACCAATATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTAGATAACAAGCTTTCGTCCCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
* *
14847770 GAAATTGAAGTGAGAGTAAGATGAAGC
66 GAAATTGAAGTAAGAGTAAGAAGAAGC
* * * * * *
14847797 ACAAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAATCATTC--CTCTC
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAAC-AAGCCTTCGTCCCTC
*
14847860 TGAAATTGAAGTAAGAGCAAGA
65 TGAAATTGAAGTAAGAGTAAGA
14847882 TAAAACCCCG
Statistics
Matches: 586, Mismatches: 46, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
91 26 0.04
92 552 0.94
93 8 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (92 bp):
ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
GAAATTGAAGTAAGAGTAAGAAGAAGC
Found at i:14847321 original size:40 final size:41
Alignment explanation
Indices: 14847264--14847414 Score: 112
Period size: 40 Copynumber: 3.5 Consensus size: 41
14847254 ATTTTCCTAT
*
14847264 CCTCTTGAAATTAAAGTAAAGCTGGATAACAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
* * *
14847305 CCTC-TGAAATTGAAGTAAGAG-TGAGAAGAAGGACCAA-CACTATTTTCCTAT
1 CCTCTTGAAATTGAAGTAA-AGCTG-G-A-TA--A-CAAGC-C----TTCGT-C
14847356 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
*
14847397 CCTC-AGAAATTGAAGTAA
1 CCTCTTGAAATTGAAGTAA
14847415 GAGTAAAATA
Statistics
Matches: 86, Mismatches: 8, Indels: 33
0.68 0.06 0.26
Matches are distributed among these distances:
40 28 0.33
41 11 0.13
42 5 0.06
43 1 0.01
45 2 0.02
46 8 0.09
47 2 0.02
49 1 0.01
50 5 0.06
51 7 0.08
52 16 0.19
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (41 bp):
CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
Found at i:14848185 original size:6 final size:6
Alignment explanation
Indices: 14848165--14848223 Score: 50
Period size: 6 Copynumber: 9.8 Consensus size: 6
14848155 TTAAAAGGGT
* * *
14848165 TTTAAA TTT-AT TTTAAA TTTAAA TTTACTCA TTTAAA TTT-AC TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTA--AA TTTAAA TTTAAA TTTAAA
*
14848213 TTTAAG TTTAA
1 TTTAAA TTTAA
14848224 TCAAATTTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
5 8 0.19
6 29 0.69
8 5 0.12
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:14848200 original size:14 final size:14
Alignment explanation
Indices: 14848181--14848207 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14848171 TTTATTTTAA
14848181 ATTTAAATTTACTC
1 ATTTAAATTTACTC
14848195 ATTTAAATTTACT
1 ATTTAAATTTACT
14848208 TTAAATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTTAAATTTACTC
Found at i:14850055 original size:29 final size:27
Alignment explanation
Indices: 14850013--14850298 Score: 173
Period size: 29 Copynumber: 9.7 Consensus size: 27
14850003 GGATGGTCCA
14850013 AAAATTACCATTTTACCCACCAAACTTTCC
1 AAAATT-CCATTTTACCC-CC-AACTTTCC
* *
14850043 AAAATTCCATTTTAACCCC-AGTTTCACC
1 AAAATTCCATTTTACCCCCAACTTT--CC
14850071 AAAAATTACCATTTTACCCCCGAACTTTCC
1 -AAAATT-CCATTTTACCCCC-AACTTTCC
* * *
14850101 AAAATTCCATTTTTAACCCCGATTTTACC
1 AAAATTCCA-TTTTACCCCCAACTTT-CC
*
14850130 AAAAATTACCATTTTACCCCTGAACTTTCC
1 -AAAATT-CCATTTTACCCC-CAACTTTCC
*
14850160 AAAATTCCATTTTTAACCCCAA-TTTCACC
1 AAAATTCCA-TTTTACCCCCAACTTT--CC
* *
14850189 AAAACAAATACCATTTTACCCCTAAACTTTCC
1 ---A-AAATTCCATTTTACCCC-CAACTTTCC
* **
14850221 AAAATTCCATTTTTAACCCC-GGTTTCACC
1 AAAATTCCA-TTTTACCCCCAACTTT--CC
*
14850250 AAAAATTACCATTTTACCCTCGAACTTTCC
1 -AAAATT-CCATTTTACCC-CCAACTTTCC
* *
14850280 AAAAATCCATTTTAACCCC
1 AAAATTCCATTTTACCCCC
14850299 GATTTAACCA
Statistics
Matches: 201, Mismatches: 28, Indels: 57
0.70 0.10 0.20
Matches are distributed among these distances:
26 4 0.02
27 7 0.03
28 33 0.16
29 65 0.32
30 51 0.25
31 11 0.05
32 18 0.09
33 9 0.04
34 3 0.01
ACGTcount: A:0.34, C:0.31, G:0.02, T:0.32
Consensus pattern (27 bp):
AAAATTCCATTTTACCCCCAACTTTCC
Found at i:14850113 original size:58 final size:59
Alignment explanation
Indices: 14850010--14850385 Score: 508
Period size: 59 Copynumber: 6.4 Consensus size: 59
14850000 CCTGGATGGT
*
14850010 CCAAAAATTACCATTTTACCCACCAAACTTTCCAAAATTCCA-TTTTAACCCC-AGTTTCA
1 CCAAAAATTACCATTTTACCC-CCGAACTTTCCAAAATTCCATTTTTAACCCCGA-TTTCA
*
14850069 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTTA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* *
14850128 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* ** *
14850187 CCAAAACAAATACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGGTTTCA
1 CC-AAA-AATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
14850248 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAAATCCA-TTTTAACCCCGATTTAA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* ** * * *
14850306 CCAAAAATTACTATTTTACCCTGGAATTTTCTAAAATTCTC-TTTTTGACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTC-CATTTTTAACCCCGATTTCA
* *
14850365 CCGAAAATTACCATTTCACCC
1 CCAAAAATTACCATTTTACCC
14850386 TCGCGAGTCC
Statistics
Matches: 285, Mismatches: 26, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
58 68 0.24
59 158 0.55
60 7 0.02
61 52 0.18
ACGTcount: A:0.34, C:0.30, G:0.03, T:0.33
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:14850344 original size:178 final size:180
Alignment explanation
Indices: 14850018--14850371 Score: 556
Period size: 178 Copynumber: 2.0 Consensus size: 180
14850008 GTCCAAAAAT
14850018 TACCATTTTACCCACCAAACTTTCCAAAATTCCATTTTAACCCCAGTTTCACCAAAAATTACCAT
1 TACCATTTTACCCACCAAACTTTCCAAAATTCCATTTTAACCCCAGTTTCACCAAAAATTACCAT
* *
14850083 TTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTTACCAAAAATTACCATTTTACC
66 TTTACCCCCGAACTTTCCAAAAATCCATTTTTAACCCCGATTTAACCAAAAATTACCATTTTACC
14850148 CCTGAACTTTCCAAAATTC-CATTTTTAACCCCAATTTCACC-AAAACAAA
131 CCTGAACTTTCCAAAATTCTC-TTTTTAACCCCAATTTCACCGAAAACAAA
* *
14850197 TACCATTTTACCC-CTAAACTTTCCAAAATTCCATTTTTAACCCCGGTTTCACCAAAAATTACCA
1 TACCATTTTACCCACCAAACTTTCCAAAATTCCA-TTTTAACCCCAGTTTCACCAAAAATTACCA
* *
14850261 TTTTACCCTCGAACTTTCCAAAAATCCA-TTTTAACCCCGATTTAACCAAAAATTACTATTTTA-
65 TTTTACCCCCGAACTTTCCAAAAATCCATTTTTAACCCCGATTTAACCAAAAATTACCATTTTAC
* * * *
14850324 CCCTGGAATTTTCTAAAATTCTCTTTTTGACCCCGATTTCACCGAAAA
130 CCCT-GAACTTTCCAAAATTCTCTTTTTAACCCCAATTTCACCGAAAA
14850372 TTACCATTTC
Statistics
Matches: 161, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
177 4 0.02
178 84 0.52
179 73 0.45
ACGTcount: A:0.33, C:0.30, G:0.04, T:0.33
Consensus pattern (180 bp):
TACCATTTTACCCACCAAACTTTCCAAAATTCCATTTTAACCCCAGTTTCACCAAAAATTACCAT
TTTACCCCCGAACTTTCCAAAAATCCATTTTTAACCCCGATTTAACCAAAAATTACCATTTTACC
CCTGAACTTTCCAAAATTCTCTTTTTAACCCCAATTTCACCGAAAACAAA
Found at i:14852523 original size:2 final size:2
Alignment explanation
Indices: 14852516--14852543 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14852506 TATTTTTGTA
14852516 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14852544 TTAAAATAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14853593 original size:22 final size:22
Alignment explanation
Indices: 14853553--14853617 Score: 67
Period size: 24 Copynumber: 2.8 Consensus size: 22
14853543 CCCCCCTTTC
*
14853553 TTTCTTTTTTTTTTAAATAATA
1 TTTCTTTTTTTATTAAATAATA
*
14853575 TTTCTTTTTTATATTAATAAAATA
1 TTTCTTTTTT-TATTAA-ATAATA
*
14853599 ATTCTTTATTTTAATTAAA
1 TTTCTTT-TTTT-ATTAAA
14853618 AAAAACCCAC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
22 10 0.28
23 5 0.14
24 13 0.36
25 8 0.22
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTCTTTTTTTATTAAATAATA
Found at i:14872995 original size:4 final size:4
Alignment explanation
Indices: 14872988--14873019 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
14872978 TTGTTGGTTG
14872988 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
14873020 GTACGTATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:14875040 original size:58 final size:57
Alignment explanation
Indices: 14874959--14875077 Score: 193
Period size: 58 Copynumber: 2.1 Consensus size: 57
14874949 ACCCATCAAC
*
14874959 AAACTAAACCAAATATTTTTAAACCCAAATATAATTTCATTCTTAAAAAACACTCAT
1 AAACTAAACCAAATATTTTTAAACCCAAATATAATTTCATTCCTAAAAAACACTCAT
* * *
14875016 AAACTAAACCCAAATATTTTTAAACCTAAATATAATTTTATTCCTAAATAACACTCAT
1 AAACTAAA-CCAAATATTTTTAAACCCAAATATAATTTCATTCCTAAAAAACACTCAT
14875074 AAAC
1 AAAC
14875078 AACTCCTTGG
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
57 8 0.14
58 49 0.86
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.32
Consensus pattern (57 bp):
AAACTAAACCAAATATTTTTAAACCCAAATATAATTTCATTCCTAAAAAACACTCAT
Found at i:14875955 original size:22 final size:22
Alignment explanation
Indices: 14875909--14875957 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
14875899 AGTGAAAAAT
* *
14875909 AAAATT-TATTAAATACTTTAC
1 AAAATTATATTAAAGAATTTAC
*
14875930 AAAATTATATTAAAAGAATTTAA
1 AAAATTATATT-AAAGAATTTAC
14875953 AAAAT
1 AAAAT
14875958 ATAAAATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 6 0.26
22 4 0.17
23 13 0.57
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (22 bp):
AAAATTATATTAAAGAATTTAC
Found at i:14882803 original size:14 final size:15
Alignment explanation
Indices: 14882786--14882881 Score: 59
Period size: 17 Copynumber: 6.1 Consensus size: 15
14882776 TTTGAAAAAT
14882786 ATATAAAAATAAT-A
1 ATATAAAAATAATAA
*
14882800 ATATAAAATTAATAA
1 ATATAAAAATAATAA
* *
14882815 ATATATAAATATTAAA
1 ATATAAAAATAAT-AA
* *
14882831 AAATGAAAAATTATAA
1 ATAT-AAAAATAATAA
* *
14882847 TTATTTAAAATATAAAAA
1 --ATATAAAA-ATAATAA
*
14882865 TATATAAAAACAATAA
1 -ATATAAAAATAATAA
14882881 A
1 A
14882882 AAGCACATCT
Statistics
Matches: 61, Mismatches: 15, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
14 12 0.20
15 12 0.20
16 12 0.20
17 18 0.30
18 7 0.11
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (15 bp):
ATATAAAAATAATAA
Found at i:14882825 original size:39 final size:40
Alignment explanation
Indices: 14882780--14882880 Score: 109
Period size: 39 Copynumber: 2.5 Consensus size: 40
14882770 TAATATTTTG
14882780 AAAAATATATAAAAATAATAATATAAAATTA-AT-AAATAT
1 AAAAATATATAAAAATAATAAT-TAAAATTATATAAAATAT
* * * *
14882819 ATAAATAT-TAAAAAATGAAAAATTATAATTATTTAAAATAT
1 AAAAATATAT-AAAAAT-AATAATTAAAATTATATAAAATAT
*
14882860 AAAAATATATAAAAACAATAA
1 AAAAATATATAAAAATAATAA
14882881 AAAGCACATC
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
38 1 0.02
39 20 0.40
40 10 0.20
41 18 0.36
42 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (40 bp):
AAAAATATATAAAAATAATAATTAAAATTATATAAAATAT
Found at i:14885490 original size:30 final size:30
Alignment explanation
Indices: 14885456--14885517 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
14885446 TATTTTATTA
14885456 TTAATTTTGTTATTATTTTAGAG-TCATTTG
1 TTAATTTTGTTATTATTTTAGAGAT-ATTTG
14885486 TTAATTTTGTTATTATTTTAGAGATATTTG
1 TTAATTTTGTTATTATTTTAGAGATATTTG
14885516 TT
1 TT
14885518 TGTTAAGTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.24, C:0.02, G:0.13, T:0.61
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAGAGATATTTG
Found at i:14885620 original size:18 final size:18
Alignment explanation
Indices: 14885585--14885624 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
14885575 GAAATATTTA
*
14885585 TTTTAATGTTTTTAATAT
1 TTTTAATGTTTATAATAT
14885603 TTTTAATGTATTATATATAT
1 TTTTAATGT-TTATA-ATAT
14885623 TT
1 TT
14885625 AAAAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 4 0.21
20 6 0.32
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (18 bp):
TTTTAATGTTTATAATAT
Found at i:14887736 original size:37 final size:37
Alignment explanation
Indices: 14887695--14887934 Score: 176
Period size: 37 Copynumber: 6.3 Consensus size: 37
14887685 CAGTTGGCAT
*
14887695 GATTTAATATTGCGATTGTCATTTTTACAGTTCACTC
1 GATTTAATATTGCGACTGTCATTTTTACAGTTCACTC
* * * * * *
14887732 GATTTAAGATTGCGATTTTCGATATTCTAACAATTCACTT
1 GATTTAATATTGCGACTGTC-AT-TT-TTACAGTTCACTC
* * * * *
14887772 GATTTAATATCGCAACTGTCAATTTTACAATTCGCTC
1 GATTTAATATTGCGACTGTCATTTTTACAGTTCACTC
* * * ** * *
14887809 GATTTAATATCGCGACGGTCGTTTTTATGGTTCGCTT
1 GATTTAATATTGCGACTGTCATTTTTACAGTTCACTC
* * *
14887846 GATTTAATATCGCGACTTTCAATATTCTAACAGTTCACTC
1 GATTTAATATTGCGACTGTC-AT-TT-TTACAGTTCACTC
* * *
14887886 GATTTAATATTGC-AGCTGTTATTTTTACGGTTCGCTC
1 GATTTAATATTGCGA-CTGTCATTTTTACAGTTCACTC
*
14887923 GATTTAAAATTG
1 GATTTAATATTG
14887935 AGTCTTTCGA
Statistics
Matches: 159, Mismatches: 37, Indels: 14
0.76 0.18 0.07
Matches are distributed among these distances:
37 96 0.60
38 7 0.04
39 8 0.05
40 48 0.30
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (37 bp):
GATTTAATATTGCGACTGTCATTTTTACAGTTCACTC
Found at i:14887755 original size:77 final size:77
Alignment explanation
Indices: 14887663--14887815 Score: 189
Period size: 77 Copynumber: 2.0 Consensus size: 77
14887653 CTGATTTGCT
* * ** * * * * *
14887663 ATTGCAATCTTCGATATTTTAACAGTTGGCATGATTTAATATTGCGATTGTCATTTTTACAGTTC
1 ATTGCAATCTTCGATATTCTAACAATTCACATGATTTAATATCGCAACTGTCAATTTTACAATTC
14887728 ACTCGATTTAAG
66 ACTCGATTTAAG
* * *
14887740 ATTGCGATTTTCGATATTCTAACAATTCACTTGATTTAATATCGCAACTGTCAATTTTACAATTC
1 ATTGCAATCTTCGATATTCTAACAATTCACATGATTTAATATCGCAACTGTCAATTTTACAATTC
*
14887805 GCTCGATTTAA
66 ACTCGATTTAA
14887816 TATCGCGACG
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
77 63 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (77 bp):
ATTGCAATCTTCGATATTCTAACAATTCACATGATTTAATATCGCAACTGTCAATTTTACAATTC
ACTCGATTTAAG
Found at i:14887895 original size:114 final size:114
Alignment explanation
Indices: 14887695--14887929 Score: 290
Period size: 114 Copynumber: 2.1 Consensus size: 114
14887685 CAGTTGGCAT
* ** * * *
14887695 GATTTAATATTGCGATTGTCATTTTTACAGTTCACTCGATTTAAGATTGCGATTTTCGATATTCT
1 GATTTAATATCGCGACGGTCATTTTTACAGTTCACTCGATTTAAGATCGCGACTTTCAATATTCT
*
14887760 AACAATTCACTTGATTTAATATCGCAACTGTCAATTTTACAATTCGCTC
66 AACAATTCACTCGATTTAATATCGCAACTGTCAATTTTACAATTCGCTC
* ** * * *
14887809 GATTTAATATCGCGACGGTCGTTTTTATGGTTCGCTTGATTTAATATCGCGACTTTCAATATTCT
1 GATTTAATATCGCGACGGTCATTTTTACAGTTCACTCGATTTAAGATCGCGACTTTCAATATTCT
* * * * * **
14887874 AACAGTTCACTCGATTTAATATTGCAGCTGTTATTTTTACGGTTCGCTC
66 AACAATTCACTCGATTTAATATCGCAACTGTCAATTTTACAATTCGCTC
14887923 GATTTAA
1 GATTTAA
14887930 AATTGAGTCT
Statistics
Matches: 101, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
114 101 1.00
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (114 bp):
GATTTAATATCGCGACGGTCATTTTTACAGTTCACTCGATTTAAGATCGCGACTTTCAATATTCT
AACAATTCACTCGATTTAATATCGCAACTGTCAATTTTACAATTCGCTC
Found at i:14887918 original size:77 final size:77
Alignment explanation
Indices: 14887769--14887953 Score: 198
Period size: 77 Copynumber: 2.4 Consensus size: 77
14887759 TAACAATTCA
* * * *
14887769 CTTGATTTAATATCGCAACTGTCAAT-TT-T-ACAATTCGCTCGATTTAATATCGCGACGGTCGT
1 CTTGATTTAATATCGCGACTTTCAATATTCTAACAATTCACTCGATTTAATATCGCGACGGTCAT
*
14887831 TTTTATGGTTCG
66 TTTTACGGTTCG
* * * *
14887843 CTTGATTTAATATCGCGACTTTCAATATTCTAACAGTTCACTCGATTTAATATTGC-AGCTGTTA
1 CTTGATTTAATATCGCGACTTTCAATATTCTAACAATTCACTCGATTTAATATCGCGA-CGGTCA
14887907 TTTTTACGGTTCG
65 TTTTTACGGTTCG
* * * * * *
14887920 CTCGATTTAAAATTGAGTCTTTCGATATTCTAAC
1 CTTGATTTAATATCGCGACTTTCAATATTCTAAC
14887954 TAGGGGTAAG
Statistics
Matches: 92, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
74 24 0.26
75 2 0.02
76 2 0.02
77 64 0.70
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (77 bp):
CTTGATTTAATATCGCGACTTTCAATATTCTAACAATTCACTCGATTTAATATCGCGACGGTCAT
TTTTACGGTTCG
Found at i:14889237 original size:23 final size:23
Alignment explanation
Indices: 14889207--14889252 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
14889197 AGATAAATTC
*
14889207 AAAGTTTGATGAGTTCAAAGTTT
1 AAAGTTTGATAAGTTCAAAGTTT
14889230 AAAGTTTGATAAGTTCAAAGTTT
1 AAAGTTTGATAAGTTCAAAGTTT
14889253 GACATACCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.04, G:0.20, T:0.39
Consensus pattern (23 bp):
AAAGTTTGATAAGTTCAAAGTTT
Found at i:14889243 original size:16 final size:16
Alignment explanation
Indices: 14889224--14889254 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14889214 GATGAGTTCA
*
14889224 AAGTTTAAAGTTTGAT
1 AAGTTCAAAGTTTGAT
14889240 AAGTTCAAAGTTTGA
1 AAGTTCAAAGTTTGA
14889255 CATACCAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.19, T:0.39
Consensus pattern (16 bp):
AAGTTCAAAGTTTGAT
Found at i:14894747 original size:44 final size:44
Alignment explanation
Indices: 14894692--14894775 Score: 150
Period size: 44 Copynumber: 1.9 Consensus size: 44
14894682 AATCCAAAAA
*
14894692 TAATTTTATTTGCTTCAAAATAAAAAATAAAACAATTAAAAATG
1 TAATCTTATTTGCTTCAAAATAAAAAATAAAACAATTAAAAATG
*
14894736 TAATCTTATTTGCTTTAAAATAAAAAATAAAACAATTAAA
1 TAATCTTATTTGCTTCAAAATAAAAAATAAAACAATTAAA
14894776 TTGAATTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.35
Consensus pattern (44 bp):
TAATCTTATTTGCTTCAAAATAAAAAATAAAACAATTAAAAATG
Found at i:14897889 original size:18 final size:19
Alignment explanation
Indices: 14897874--14897913 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
14897864 AACATTAATA
14897874 ATTTTAT-AATTTTTAAAT
1 ATTTTATGAATTTTTAAAT
*
14897892 TTTTTATGAATTTTTAAAT
1 ATTTTATGAATTTTTAAAT
14897911 ATT
1 ATT
14897914 AAAAAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
ATTTTATGAATTTTTAAAT
Found at i:14897892 original size:8 final size:9
Alignment explanation
Indices: 14897848--14897907 Score: 52
Period size: 9 Copynumber: 6.6 Consensus size: 9
14897838 GAATTAGAAC
14897848 TTTTATAAT
1 TTTTATAAT
*
14897857 TTTTAATAAC
1 TTTT-ATAAT
* *
14897867 ATTAATAA-
1 TTTTATAAT
14897875 TTTTATAAT
1 TTTTATAAT
14897884 TTTTA-AATT
1 TTTTATAA-T
14897893 TTTTATGAAT
1 TTTTAT-AAT
14897903 TTTTA
1 TTTTA
14897908 AATATTAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
8 8 0.20
9 19 0.46
10 12 0.29
11 2 0.05
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (9 bp):
TTTTATAAT
Found at i:14898062 original size:17 final size:18
Alignment explanation
Indices: 14898040--14898074 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14898030 AATTTAAGGG
14898040 TTAAATG-AGGTGAAAAT
1 TTAAATGAAGGTGAAAAT
*
14898057 TTAAATGAAGGTTAAAAT
1 TTAAATGAAGGTGAAAAT
14898075 GATTTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.49, C:0.00, G:0.20, T:0.31
Consensus pattern (18 bp):
TTAAATGAAGGTGAAAAT
Found at i:14902042 original size:23 final size:23
Alignment explanation
Indices: 14901968--14902158 Score: 132
Period size: 23 Copynumber: 8.5 Consensus size: 23
14901958 TAAACGGAAC
* * *
14901968 AAACAGAGAGTAC-CGAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
* *
14901990 GAACAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
14902012 GGGCAACAGAGAGCACACAAAGTGCT
1 ---AAACAGAGAGCACACAAAGTGCT
*
14902038 AAACAGAGAGTACACAAA--G-T
1 AAACAGAGAGCACACAAAGTGCT
*
14902058 --AC--TGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
14902077 AATCAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
14902100 AATAACAGAGAGCACGA-GACGTGCT
1 -A-AACAGAGAGCAC-ACAAAGTGCT
*
14902125 AAACAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
14902148 AATCAGAGAGC
1 AAACAGAGAGC
14902159 GCGCTAGTGT
Statistics
Matches: 132, Mismatches: 21, Indels: 31
0.72 0.11 0.17
Matches are distributed among these distances:
16 10 0.08
18 3 0.02
19 1 0.01
20 1 0.01
21 2 0.02
22 18 0.14
23 58 0.44
24 2 0.02
25 29 0.22
26 8 0.06
ACGTcount: A:0.42, C:0.21, G:0.25, T:0.12
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:14902108 original size:25 final size:23
Alignment explanation
Indices: 14902061--14902158 Score: 135
Period size: 23 Copynumber: 4.2 Consensus size: 23
14902051 ACAAAGTACT
*
14902061 GAGCACACAAAGTGCTAATCAGA
1 GAGCACACACAGTGCTAATCAGA
14902084 GAGCACACACAGTGCTAATAACAGA
1 GAGCACACACAGTGCTAAT--CAGA
* *
14902109 GAGCACGAGAC-GTGCTAAACAGA
1 GAGCAC-ACACAGTGCTAATCAGA
14902132 GAGCACACACAGTGCTAATCAGA
1 GAGCACACACAGTGCTAATCAGA
14902155 GAGC
1 GAGC
14902159 GCGCTAGTGT
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
22 3 0.05
23 43 0.65
25 17 0.26
26 3 0.05
ACGTcount: A:0.41, C:0.23, G:0.24, T:0.11
Consensus pattern (23 bp):
GAGCACACACAGTGCTAATCAGA
Found at i:14908445 original size:23 final size:23
Alignment explanation
Indices: 14908371--14908561 Score: 132
Period size: 23 Copynumber: 8.5 Consensus size: 23
14908361 TAAACGGAAC
* * *
14908371 AAACAGAGAGTAC-CGAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
* *
14908393 GAACAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
14908415 GGGCAACAGAGAGCACACAAAGTGCT
1 ---AAACAGAGAGCACACAAAGTGCT
*
14908441 AAACAGAGAGTACACAAA--G-T
1 AAACAGAGAGCACACAAAGTGCT
*
14908461 --AC--TGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
14908480 AATCAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
14908503 AATAACAGAGAGCACGA-GACGTGCT
1 -A-AACAGAGAGCAC-ACAAAGTGCT
*
14908528 AAACAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
14908551 AATCAGAGAGC
1 AAACAGAGAGC
14908562 GCGCTAGTGT
Statistics
Matches: 132, Mismatches: 21, Indels: 31
0.72 0.11 0.17
Matches are distributed among these distances:
16 10 0.08
18 3 0.02
19 1 0.01
20 1 0.01
21 2 0.02
22 18 0.14
23 58 0.44
24 2 0.02
25 29 0.22
26 8 0.06
ACGTcount: A:0.42, C:0.21, G:0.25, T:0.12
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:14908511 original size:25 final size:23
Alignment explanation
Indices: 14908464--14908561 Score: 135
Period size: 23 Copynumber: 4.2 Consensus size: 23
14908454 ACAAAGTACT
*
14908464 GAGCACACAAAGTGCTAATCAGA
1 GAGCACACACAGTGCTAATCAGA
14908487 GAGCACACACAGTGCTAATAACAGA
1 GAGCACACACAGTGCTAAT--CAGA
* *
14908512 GAGCACGAGAC-GTGCTAAACAGA
1 GAGCAC-ACACAGTGCTAATCAGA
14908535 GAGCACACACAGTGCTAATCAGA
1 GAGCACACACAGTGCTAATCAGA
14908558 GAGC
1 GAGC
14908562 GCGCTAGTGT
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
22 3 0.05
23 43 0.65
25 17 0.26
26 3 0.05
ACGTcount: A:0.41, C:0.23, G:0.24, T:0.11
Consensus pattern (23 bp):
GAGCACACACAGTGCTAATCAGA
Found at i:14910906 original size:118 final size:118
Alignment explanation
Indices: 14910741--14911021 Score: 402
Period size: 118 Copynumber: 2.4 Consensus size: 118
14910731 TGCGCTCAAT
* * * **
14910741 GCTCATCGATATGATTGAAGTGAAAA-TTGTGCTAAACACTCATCGACACGTAGTTGAAGTAACC
1 GCTCATCGGTATAATCGAAGT-AAAAGTTGTGCCCAACACTCATCGACACGTAGTTGAAGTAACC
*
14910805 ATTTGGCACCCAGTGCCTCATCGGAACATCCAAATTAATTAGTTTGCACCCAAC
65 ATTTGGCACCCAGTGCCTCATCGGAACATCCAAAGTAATTAGTTTGCACCCAAC
* * * *
14910859 GCTTATTGGTATAATCGAAGTAAAAGTTGTGCCCAGCACTCATCGACACGTAGTTGAAGTAATCA
1 GCTCATCGGTATAATCGAAGTAAAAGTTGTGCCCAACACTCATCGACACGTAGTTGAAGTAACCA
* * * * *
14910924 TTTGGCACTCGGTGTCTCATCGGAACGTCCAAAGTAATTAGTTTGCACCCTAC
66 TTTGGCACCCAGTGCCTCATCGGAACATCCAAAGTAATTAGTTTGCACCCAAC
*
14910977 GCTCATCGGTATAATCGAAGTAAAGGTTGTGCCCAACACTCATCG
1 GCTCATCGGTATAATCGAAGTAAAAGTTGTGCCCAACACTCATCG
14911022 GAACGTCTGA
Statistics
Matches: 143, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
117 4 0.03
118 139 0.97
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (118 bp):
GCTCATCGGTATAATCGAAGTAAAAGTTGTGCCCAACACTCATCGACACGTAGTTGAAGTAACCA
TTTGGCACCCAGTGCCTCATCGGAACATCCAAAGTAATTAGTTTGCACCCAAC
Found at i:14920361 original size:6 final size:6
Alignment explanation
Indices: 14920327--14920388 Score: 56
Period size: 6 Copynumber: 10.5 Consensus size: 6
14920317 TAATAGGGAT
* * * *
14920327 TTTCAA TTTACAA -TTC-A TATCAC TTTCAA TTTCAA TTTCAC TTTCAC
1 TTTCAA TTT-CAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA
*
14920374 TTTCAC TTTCAA TTT
1 TTTCAA TTTCAA TTT
14920389 TGATCACAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
4 1 0.02
5 3 0.06
6 40 0.85
7 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (6 bp):
TTTCAA
Found at i:14922708 original size:58 final size:58
Alignment explanation
Indices: 14922646--14922776 Score: 167
Period size: 58 Copynumber: 2.3 Consensus size: 58
14922636 ACCCGGGGGC
* * *
14922646 AAAATAGTAA-TTTTTGTTAAAAT-TAGGTCAAAAATGGGATTTTTAAAAGTTTGAGGGT
1 AAAATAGTAATTTTTTG-TAAAATCGAGGT-AAAAATGAGATTTTTAAAAGTTTAAGGGT
* * * *
14922704 AAAATGGTAATTTTTTGTGAAATCGAGGTTAAAATGAGATTTTTGAAAGTTTAAGGGT
1 AAAATAGTAATTTTTTGTAAAATCGAGGTAAAAATGAGATTTTTAAAAGTTTAAGGGT
14922762 AAAATAGTAATTTTT
1 AAAATAGTAATTTTT
14922777 AGAAAGTTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
58 53 0.84
59 10 0.16
ACGTcount: A:0.39, C:0.02, G:0.21, T:0.39
Consensus pattern (58 bp):
AAAATAGTAATTTTTTGTAAAATCGAGGTAAAAATGAGATTTTTAAAAGTTTAAGGGT
Found at i:14922783 original size:30 final size:29
Alignment explanation
Indices: 14922684--14922926 Score: 212
Period size: 30 Copynumber: 8.2 Consensus size: 29
14922674 CAAAAATGGG
14922684 ATTTTTA-AAAGTTTGAGGGTAAAATGGTA
1 ATTTTTAGAAAGTTTGAGGGTAAAAT-GTA
* * *
14922713 ATTTTTTGTGAAA--TCGAGGTTAAAATG-A
1 A-TTTTT-AGAAAGTTTGAGGGTAAAATGTA
*
14922741 GATTTTT-GAAAGTTTAAGGGTAAAATAGTA
1 -ATTTTTAGAAAGTTTGAGGGTAAAAT-GTA
* *
14922771 ATTTTTAGAAAGTTTTAGGGTTAAAATATA
1 ATTTTTAGAAAGTTTGAGGG-TAAAATGTA
*
14922801 ATTTTTAGATAGTTTTGA-GGTCAAAATGTA
1 ATTTTTAGAAAG-TTTGAGGGT-AAAATGTA
* * * *
14922831 ATTTTCAAAAAGTTTTGAGGTTAAAATGAA
1 ATTTTTAGAAAG-TTTGAGGGTAAAATGTA
* *
14922861 ATTTTTAGAAAGTTTTAGGTTTAAAATGTA
1 ATTTTTAGAAAGTTTGAGG-GTAAAATGTA
14922891 ATTTTTAGAAAGTTTTG-GGGTGAAAATGTA
1 ATTTTTAGAAAG-TTTGAGGGT-AAAATGTA
14922921 ATTTTT
1 ATTTTT
14922927 GGATAGTCCA
Statistics
Matches: 176, Mismatches: 22, Indels: 31
0.77 0.10 0.14
Matches are distributed among these distances:
26 4 0.02
28 16 0.09
29 18 0.10
30 120 0.68
31 15 0.09
32 3 0.02
ACGTcount: A:0.37, C:0.01, G:0.20, T:0.42
Consensus pattern (29 bp):
ATTTTTAGAAAGTTTGAGGGTAAAATGTA
Found at i:14922874 original size:90 final size:91
Alignment explanation
Indices: 14922761--14922925 Score: 269
Period size: 90 Copynumber: 1.8 Consensus size: 91
14922751 AGTTTAAGGG
* *
14922761 TAAAATAGTAATTTTTAGAAAGTTTTAGGGTTAAAATATAATTTTTAGATAGTTTTGAGGTCAAA
1 TAAAATAGAAATTTTTAGAAAGTTTTAGGGTTAAAATATAATTTTTAGAAAGTTTTGAGGTCAAA
14922826 ATGTAATTTTCAAAAAGTTTTGAGGT
66 ATGTAATTTTCAAAAAGTTTTGAGGT
* * * *
14922852 TAAAAT-GAAATTTTTAGAAAGTTTTAGGTTTAAAATGTAATTTTTAGAAAGTTTTGGGGTGAAA
1 TAAAATAGAAATTTTTAGAAAGTTTTAGGGTTAAAATATAATTTTTAGAAAGTTTTGAGGTCAAA
14922916 ATGTAATTTT
66 ATGTAATTTT
14922926 TGGATAGTCC
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
90 62 0.91
91 6 0.09
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.42
Consensus pattern (91 bp):
TAAAATAGAAATTTTTAGAAAGTTTTAGGGTTAAAATATAATTTTTAGAAAGTTTTGAGGTCAAA
ATGTAATTTTCAAAAAGTTTTGAGGT
Found at i:14924750 original size:6 final size:6
Alignment explanation
Indices: 14924733--14924791 Score: 52
Period size: 6 Copynumber: 10.3 Consensus size: 6
14924723 TTTGGACATT
* * * * *
14924733 AATTTA ATTTTA AATTTA AATTT- TATATA AATTTA AATTCA AA-ATA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
14924779 AATTT- AATTTA AA
1 AATTTA AATTTA AA
14924792 AATAAATTTT
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
5 11 0.28
6 29 0.73
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (6 bp):
AATTTA
Found at i:14924763 original size:17 final size:17
Alignment explanation
Indices: 14924743--14924800 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
14924733 AATTTAATTT
** *
14924743 TAAATTTAAATTTTATA
1 TAAATTTAAATTCAAAA
14924760 TAAATTTAAATTCAAAA
1 TAAATTTAAATTCAAAA
* *
14924777 TAAATTTAATTTAAAAA
1 TAAATTTAAATTCAAAA
14924794 TAAATTT
1 TAAATTT
14924801 TTATCCCATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
TAAATTTAAATTCAAAA
Found at i:14925698 original size:23 final size:23
Alignment explanation
Indices: 14925668--14925793 Score: 110
Period size: 23 Copynumber: 5.4 Consensus size: 23
14925658 CACTAGCGCA
14925668 CTCTCTGTTTAGCAC-GTCTCGTG
1 CTCTCTGTTTAGCACTGTCT-GTG
*
14925691 CTCTCTGTTATTAGCACTGTGTGTG
1 CTCTCTG-T-TTAGCACTGTCTGTG
* * * *
14925716 CTTTCTGATTAGCACTTTGTGTG
1 CTCTCTGTTTAGCACTGTCTGTG
* * * * * *
14925739 CTCTCTGATTAGTACTTTGTATA
1 CTCTCTGTTTAGCACTGTCTGTG
*
14925762 CTCTCTGTTTAGCACTGTGTGTG
1 CTCTCTGTTTAGCACTGTCTGTG
14925785 CTCTCTGTT
1 CTCTCTGTT
14925794 GCCCAGCACT
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
23 67 0.77
24 1 0.01
25 16 0.18
26 3 0.03
ACGTcount: A:0.12, C:0.22, G:0.21, T:0.45
Consensus pattern (23 bp):
CTCTCTGTTTAGCACTGTCTGTG
Found at i:14925777 original size:46 final size:47
Alignment explanation
Indices: 14925667--14925792 Score: 139
Period size: 46 Copynumber: 2.7 Consensus size: 47
14925657 ACACTAGCGC
* *
14925667 ACTCTCTGTTTAGCACGTCT-CGTGCTCTCTGTTATTAGCACTGTGTGT
1 ACTCTCTGTTTAGCAC-TCTGTGTGCTCTCTG-TATTAGCACTGTGTAT
* * * * * *
14925715 GCTTTCTGATTAGCACTTTGTGTGCTCTCTG-ATTAGTACTTTGTAT
1 ACTCTCTGTTTAGCACTCTGTGTGCTCTCTGTATTAGCACTGTGTAT
*
14925761 ACTCTCTGTTTAGCACTGTGTGTGCTCTCTGT
1 ACTCTCTGTTTAGCACTCTGTGTGCTCTCTGT
14925793 TGCCCAGCAC
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
46 39 0.61
47 2 0.03
48 23 0.36
ACGTcount: A:0.13, C:0.22, G:0.21, T:0.44
Consensus pattern (47 bp):
ACTCTCTGTTTAGCACTCTGTGTGCTCTCTGTATTAGCACTGTGTAT
Found at i:14925835 original size:69 final size:69
Alignment explanation
Indices: 14925691--14925840 Score: 191
Period size: 69 Copynumber: 2.1 Consensus size: 69
14925681 ACGTCTCGTG
* *
14925691 CTCTCTGTTATTAGCACTGTGTGTGCTTTCTGATTAGCACTTTGTGTGCTCTCTGATTAGTACTT
1 CTCTCTG-T-TTAGCACTGTGTGTGCTCTCTGATTAGCACTTTATGTGCTCTCTGATTAGTACTT
14925756 TGTATA
64 TGTATA
14925762 CTCTCTGTTTAGCACTGTGTGTGCTCTCTG-TTGCCCAGCAC-TTATGTGCTCTCT-ATTAGTAC
1 CTCTCTGTTTAGCACTGTGTGTGCTCTCTGATT----AGCACTTTATGTGCTCTCTGATTAGTAC
*
14925824 TTTG-GTA
62 TTTGTATA
14925831 CTCTCTGTTT
1 CTCTCTGTTT
14925841 GTTCCGTATA
Statistics
Matches: 72, Mismatches: 3, Indels: 10
0.85 0.04 0.12
Matches are distributed among these distances:
68 2 0.03
69 33 0.46
70 13 0.18
71 19 0.26
72 5 0.07
ACGTcount: A:0.13, C:0.22, G:0.19, T:0.45
Consensus pattern (69 bp):
CTCTCTGTTTAGCACTGTGTGTGCTCTCTGATTAGCACTTTATGTGCTCTCTGATTAGTACTTTG
TATA
Found at i:14928125 original size:6 final size:6
Alignment explanation
Indices: 14928108--14928183 Score: 63
Period size: 6 Copynumber: 13.3 Consensus size: 6
14928098 TTTGGACATT
* * *
14928108 AATTTA ATTTTA AATTTA AATTTA TAA--TA AATTTA AATTT- TATGTA
1 AATTTA AATTTA AATTTA AATTTA -AATTTA AATTTA AATTTA AATTTA
* *
14928154 AATTTA AATTCA AA-ATA AATTT- AATTTA AA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AA
14928184 AATAAATTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
4 2 0.04
5 13 0.24
6 37 0.69
7 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (6 bp):
AATTTA
Found at i:14928138 original size:17 final size:17
Alignment explanation
Indices: 14928118--14928192 Score: 89
Period size: 17 Copynumber: 4.4 Consensus size: 17
14928108 AATTTAATTT
*
14928118 TAAATTTAAATTTATAA
1 TAAATTTAAATTTAAAA
* **
14928135 TAAATTTAAATTTTATG
1 TAAATTTAAATTTAAAA
*
14928152 TAAATTTAAATTCAAAA
1 TAAATTTAAATTTAAAA
14928169 TAAATTT-AATTTAAAAA
1 TAAATTTAAATTT-AAAA
14928186 TAAATTT
1 TAAATTT
14928193 TTATCCTATT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
16 4 0.08
17 44 0.92
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:14928910 original size:200 final size:200
Alignment explanation
Indices: 14928528--14929059 Score: 762
Period size: 200 Copynumber: 2.6 Consensus size: 200
14928518 ATTCCATTAG
* * *
14928528 TTTAGTTGACTTCGACCTGTTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGCA
1 TTTA-TTG-CTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCTGGGTTCGAAGATTTGCTCGCG
* * *
14928593 TTGAGCGTTGGTTTGATTTGGTATTCTTCT-TAGTGTCTCATCAAGAAGATGACCGCCTCGATTA
64 TTGAGC----G-TTGAGTTGGTATTCTTCTCT-GTATCTCATCAAGAAGATGACCGCCTCGCTTA
* *
14928657 TTTTAACTCGCTTCTCTGGATCTTCTCAAGAAGATGAATCTGGTCCACTTCTCTGTATCTCATCA
123 TTTTAACTCGCTTCTCTGGATCTCCTCAAGAAGACGAATCTGGTCCACTTCTCTGTATCTCATCA
14928722 GGAAGCTAACCAT
188 GGAAGCTAACCAT
* *
14928735 TTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCTGAGTTCGAAGATTGGCTCGCGTT
1 TTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCTGGGTTCGAAGATTTGCTCGCGTT
* *
14928800 GAACGTTGAGTTGGTATTCTTCTCTGTATCTCATCAAGAAGATGACCGCCTCGCTTATTTTAATT
66 GAGCGTTGAGTTGGTATTCTTCTCTGTATCTCATCAAGAAGATGACCGCCTCGCTTATTTTAACT
* * * * *
14928865 CGCTTCTCTGGATCTCCTCAGGAAGACGAATTTGGTTCGCTTCTCTGTATCTCATCAGGAGGCTA
131 CGCTTCTCTGGATCTCCTCAAGAAGACGAATCTGGTCCACTTCTCTGTATCTCATCAGGAAGCTA
14928930 ACCAT
196 ACCAT
* *
14928935 TTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAACTGGGTTCGAAGATTTGTTCGCGTT
1 TTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCTGGGTTCGAAGATTTGCTCGCGTT
* * * * *
14929000 GAGTGTTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATTACCGCCTCAC-TATTTT
66 GAGCGTTGAGTTGGTATTCTTCTCTGTATCTCATCAAGAAGATGACCGCCTCGCTTATTTT
14929060 GTTGAACTAC
Statistics
Matches: 297, Mismatches: 27, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
199 6 0.02
200 226 0.76
201 2 0.01
205 56 0.19
206 3 0.01
207 4 0.01
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (200 bp):
TTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCTGGGTTCGAAGATTTGCTCGCGTT
GAGCGTTGAGTTGGTATTCTTCTCTGTATCTCATCAAGAAGATGACCGCCTCGCTTATTTTAACT
CGCTTCTCTGGATCTCCTCAAGAAGACGAATCTGGTCCACTTCTCTGTATCTCATCAGGAAGCTA
ACCAT
Found at i:14940904 original size:58 final size:59
Alignment explanation
Indices: 14940774--14940904 Score: 169
Period size: 58 Copynumber: 2.3 Consensus size: 59
14940764 ACCCGGAGGC
* *
14940774 AAAATAGTAA-TTTTGGTTGAAATTAGGTCAAAAATAGGATTTTTAAAAGTTCAGGGGT
1 AAAATAGTAATTTTTGGTTGAAATGAGGTCAAAAATAGGATTTTTAAAAGTTCAAGGGT
* * * * *
14940832 AAAATGGTAATTTTTGG-TGAAATCGAGGT-TAAAATGGGATTTTTGAAAGTTTAAGGGT
1 AAAATAGTAATTTTTGGTTGAAAT-GAGGTCAAAAATAGGATTTTTAAAAGTTCAAGGGT
14940890 AAAATAGTAATTTTT
1 AAAATAGTAATTTTT
14940905 AGAAAGTTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
58 53 0.84
59 10 0.16
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (59 bp):
AAAATAGTAATTTTTGGTTGAAATGAGGTCAAAAATAGGATTTTTAAAAGTTCAAGGGT
Found at i:14940976 original size:31 final size:31
Alignment explanation
Indices: 14940858--14941085 Score: 226
Period size: 30 Copynumber: 7.6 Consensus size: 31
14940848 GTGAAATCGA
** *
14940858 GGTTAAAATGGGATTTTT-GAAAG-TTTAAG
1 GGTTAAAATGTAATTTTTAGAAAGTTTTGAG
14940887 GG-TAAAATAGTAATTTTTAGAAAGTTTTG-G
1 GGTTAAAAT-GTAATTTTTAGAAAGTTTTGAG
* *
14940917 GGTTAAAATGTGA-TTTTAGATAA-ATTTGAG
1 GGTTAAAATGTAATTTTTAGA-AAGTTTTGAG
**
14940947 GGCCAAAATGTAATTTTTA-AAAGGTTTTGA-
1 GGTTAAAATGTAATTTTTAGAAA-GTTTTGAG
* *
14940977 GGTTAAAATGTAATTTTAAAAAAGTTTTGA-
1 GGTTAAAATGTAATTTTTAGAAAGTTTTGAG
* *
14941007 GGTTAAAATGAAATTTTCAGAAAGTTTT-AG
1 GGTTAAAATGTAATTTTTAGAAAGTTTTGAG
* *
14941037 GGTCAAAATGTATTTTTTTAGAAAGTTTT-AG
1 GGTTAAAATGTA-ATTTTTAGAAAGTTTTGAG
14941068 GGTTAAAATGTAATTTTT
1 GGTTAAAATGTAATTTTT
14941086 GGATAGTCCA
Statistics
Matches: 166, Mismatches: 21, Indels: 23
0.79 0.10 0.11
Matches are distributed among these distances:
28 6 0.04
29 23 0.14
30 88 0.53
31 49 0.30
ACGTcount: A:0.37, C:0.02, G:0.21, T:0.40
Consensus pattern (31 bp):
GGTTAAAATGTAATTTTTAGAAAGTTTTGAG
Found at i:14942140 original size:29 final size:28
Alignment explanation
Indices: 14942086--14942142 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
14942076 TTTCTTTTTT
* *
14942086 TATTATTATTAATTTTTTAGTATTAAAA
1 TATTAATATTAATTTATTAGTATTAAAA
14942114 TATTAATATTATATTTATTA-TCATTAAAA
1 TATTAATATTA-ATTTATTAGT-ATTAAAA
14942143 CCTATAACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (28 bp):
TATTAATATTAATTTATTAGTATTAAAA
Found at i:14942916 original size:6 final size:6
Alignment explanation
Indices: 14942899--14942971 Score: 62
Period size: 6 Copynumber: 12.3 Consensus size: 6
14942889 TTTGGACATT
* * *
14942899 AATTTA ATTTTA AATTTA AATTTATA AATTTA AATTT- TATGTA AATTTA
1 AATTTA AATTTA AATTTA AA-TT-TA AATTTA AATTTA AATTTA AATTTA
* *
14942948 AATTCA AA-ATA AATTT- AATTTA AA
1 AATTTA AATTTA AATTTA AATTTA AA
14942972 AATAAATTTT
Statistics
Matches: 52, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
5 11 0.21
6 33 0.63
7 4 0.08
8 4 0.08
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (6 bp):
AATTTA
Found at i:14942960 original size:17 final size:17
Alignment explanation
Indices: 14942940--14942980 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
14942930 AAATTTTATG
*
14942940 TAAATTTAAATTCAAAA
1 TAAATTTAAATTAAAAA
*
14942957 TAAATTTAATTTAAAAA
1 TAAATTTAAATTAAAAA
14942974 TAAATTT
1 TAAATTT
14942981 TTATCCCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATTTAAATTAAAAA
Found at i:14943877 original size:23 final size:22
Alignment explanation
Indices: 14943847--14943973 Score: 119
Period size: 23 Copynumber: 5.5 Consensus size: 22
14943837 ACACTAGCGC
*
14943847 GCTCTCTGTTTAGCACGTCTCGT
1 GCTCTCTGTTTAGCACGTGT-GT
14943870 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG-T-TTAGCAC-GTGTGT
* * *
14943895 GCTTTCTGATTAGCACTTTGTGT
1 GCTCTCTGTTTAGCAC-GTGTGT
* * *
14943918 GCTCTCTGATTAGTACTTTGTGT
1 GCTCTCTGTTTAGCAC-GTGTGT
*
14943941 ACTCTCTGTTTAGCACTGTGTGT
1 GCTCTCTGTTTAGCAC-GTGTGT
14943964 GCTCTCTGTT
1 GCTCTCTGTT
14943974 GCCCAGCACT
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
23 70 0.78
24 1 0.01
25 16 0.18
26 3 0.03
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.45
Consensus pattern (22 bp):
GCTCTCTGTTTAGCACGTGTGT
Found at i:14943954 original size:46 final size:47
Alignment explanation
Indices: 14943848--14943972 Score: 146
Period size: 46 Copynumber: 2.7 Consensus size: 47
14943838 CACTAGCGCG
* *
14943848 CTCTCTGTTTAGCACGTCT-CGTGCTCTCTGTTATTAGCACTGTGTGTG
1 CTCTCTGTTTAGCAC-TCTGTGTGCTCTCTG-TATTAGCACTGTGTGTA
* * * * *
14943896 CTTTCTGATTAGCACTTTGTGTGCTCTCTG-ATTAGTACTTTGTGTA
1 CTCTCTGTTTAGCACTCTGTGTGCTCTCTGTATTAGCACTGTGTGTA
*
14943942 CTCTCTGTTTAGCACTGTGTGTGCTCTCTGT
1 CTCTCTGTTTAGCACTCTGTGTGCTCTCTGT
14943973 TGCCCAGCAC
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
46 40 0.62
47 2 0.03
48 23 0.35
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.45
Consensus pattern (47 bp):
CTCTCTGTTTAGCACTCTGTGTGCTCTCTGTATTAGCACTGTGTGTA
Found at i:14944019 original size:69 final size:69
Alignment explanation
Indices: 14943881--14944020 Score: 162
Period size: 69 Copynumber: 2.0 Consensus size: 69
14943871 CTCTCTGTTA
* * * * *
14943881 TTAGCACTGTGTGTGCTTTCTGATTAGCACTTTGTGTGCTCTCTGATTAGTACTTTGTGTACTCT
1 TTAGCACTGTGTGTGCTCTCTGATTAGCACTTTATGTGCTCTCTGATTAGCACTTTGTGCACACT
14943946 CTGT
66 CTGT
*
14943950 TTAGCACTGTGTGTGCTCTCTG-TTGCCCAGCAC-TTATGTGCTCTCT-TTTAGCACTTTG-GCA
1 TTAGCACTGTGTGTGCTCTCTGATT----AGCACTTTATGTGCTCTCTGATTAGCACTTTGTGCA
14944011 CACTCTGT
62 CACTCTGT
14944019 TT
1 TT
14944021 GTTCCGTATA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
68 2 0.03
69 32 0.52
70 10 0.16
71 12 0.20
72 5 0.08
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.44
Consensus pattern (69 bp):
TTAGCACTGTGTGTGCTCTCTGATTAGCACTTTATGTGCTCTCTGATTAGCACTTTGTGCACACT
CTGT
Found at i:14946429 original size:51 final size:51
Alignment explanation
Indices: 14946369--14946610 Score: 324
Period size: 51 Copynumber: 4.8 Consensus size: 51
14946359 CTATAAATGA
* *
14946369 AAAGGTCCGATGACTAAGTGTCATAATGAGGAAATGAATCCTTTACAGATT
1 AAAGGTCCGATGACTAAGTGTCATAATGAGTAAATGAATCCTTTACGGATT
*
14946420 AAAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATAATGAGTAAATGAATCCTTTACGGATT
* * **
14946471 AAAGGTCCAATAACTAAGTGTCATCGTGAGTAAATGAA-CCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATAATGAGTAAATGAATCCTTTACGGATT
* * * *
14946521 AAAGGTCCGATGACTAAGTGTCATAGTGAGTAAATGAATCCATGATGGATT
1 AAAGGTCCGATGACTAAGTGTCATAATGAGTAAATGAATCCTTTACGGATT
* ** ** *
14946572 AAGGGTCCGATGACTTTGTGTCATCGTGAGTATATGAAT
1 AAAGGTCCGATGACTAAGTGTCATAATGAGTAAATGAAT
14946611 TCCTATATGG
Statistics
Matches: 173, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
50 47 0.27
51 126 0.73
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATAATGAGTAAATGAATCCTTTACGGATT
Found at i:14946551 original size:101 final size:102
Alignment explanation
Indices: 14946369--14946610 Score: 344
Period size: 101 Copynumber: 2.4 Consensus size: 102
14946359 CTATAAATGA
** *
14946369 AAAGGTCCGATGACTAAGTGTCATAATGAGGAAATGAATCCTTTACAGATTAAAGGTCCGATGAC
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACAGATTAAAGGTCCGATGAC
* *
14946434 TAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT
66 TAAGTGTCATCATGAGTAAATGAATCCATGACGGATT
* * *
14946471 AAAGGTCCAATAACTAAGTGTCATCGTGAGTAAATGAA-CCTTTACGGATTAAAGGTCCGATGAC
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACAGATTAAAGGTCCGATGAC
*
14946535 TAAGTGTCAT-AGTGAGTAAATGAATCCATGATGGATT
66 TAAGTGTCATCA-TGAGTAAATGAATCCATGACGGATT
* ** *
14946572 AAGGGTCCGATGACTTTGTGTCATCGTGAGTATATGAAT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAAT
14946611 TCCTATATGG
Statistics
Matches: 123, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
100 1 0.01
101 89 0.72
102 33 0.27
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (102 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACAGATTAAAGGTCCGATGAC
TAAGTGTCATCATGAGTAAATGAATCCATGACGGATT
Found at i:14950893 original size:21 final size:20
Alignment explanation
Indices: 14950869--14950963 Score: 74
Period size: 21 Copynumber: 4.7 Consensus size: 20
14950859 TAATAAAAAA
14950869 TTTTATTCTTGTTTTGGTTTT
1 TTTTATTC-TGTTTTGGTTTT
14950890 TTTTA--CTGTTTTGGTTATT
1 TTTTATTCTGTTTTGGTT-TT
*
14950909 TTTT-TTACTGTTTTGATACTTT
1 TTTTATT-CTGTTTTGGT--TTT
*
14950931 TTTTCA-T-TGTTTTGGTTGT
1 TTTT-ATTCTGTTTTGGTTTT
*
14950950 TTTTATGCTGTTTT
1 TTTTATTCTGTTTT
14950964 AGTGCTATTT
Statistics
Matches: 60, Mismatches: 4, Indels: 21
0.71 0.05 0.25
Matches are distributed among these distances:
18 11 0.18
19 13 0.22
20 6 0.10
21 22 0.37
22 6 0.10
23 2 0.03
ACGTcount: A:0.08, C:0.06, G:0.15, T:0.71
Consensus pattern (20 bp):
TTTTATTCTGTTTTGGTTTT
Found at i:14950933 original size:42 final size:41
Alignment explanation
Indices: 14950886--14950994 Score: 112
Period size: 41 Copynumber: 2.6 Consensus size: 41
14950876 CTTGTTTTGG
* *
14950886 TTTTTTTTACTGTTTTGGTTATTTTTTTTACTGTTTT-GATAC
1 TTTTTTTTACTGTTTTGGTT-GTTTTTATACTGTTTTAG-TAC
* * * *
14950928 TTTTTTTCATTGTTTTGGTTGTTTTTATGCTGTTTTAGTGC
1 TTTTTTTTACTGTTTTGGTTGTTTTTATACTGTTTTAGTAC
*
14950969 TATTTTTTACTGTTTTAGTGTTGTTT
1 TTTTTTTTACTGTTTT-G-GTTGTTT
14950995 ATGTTGTTAT
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
41 28 0.51
42 20 0.36
43 7 0.13
ACGTcount: A:0.10, C:0.06, G:0.16, T:0.68
Consensus pattern (41 bp):
TTTTTTTTACTGTTTTGGTTGTTTTTATACTGTTTTAGTAC
Found at i:14950975 original size:62 final size:59
Alignment explanation
Indices: 14950869--14950984 Score: 151
Period size: 62 Copynumber: 1.9 Consensus size: 59
14950859 TAATAAAAAA
* * *
14950869 TTTTATTCTTGTTTTGGTTTTTTTTACTGTTTTGGTTATTTTTTTTACTGTTTTGATAC
1 TTTTATTCTTGTTTTGGTTTTTTTTACTGTTTTAGTGATATTTTTTACTGTTTTGATAC
* * *
14950928 TTTTTTTCATTGTTTTGGTTGTTTTTATGCTGTTTTAGTGCTATTTTTTACTGTTTT
1 TTTTATTC-TTGTTTTGGTT-TTTTT-TACTGTTTTAGTGATATTTTTTACTGTTTT
14950985 AGTGTTGTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 7 0.15
60 11 0.23
61 5 0.10
62 25 0.52
ACGTcount: A:0.09, C:0.07, G:0.15, T:0.69
Consensus pattern (59 bp):
TTTTATTCTTGTTTTGGTTTTTTTTACTGTTTTAGTGATATTTTTTACTGTTTTGATAC
Found at i:14950981 original size:21 final size:20
Alignment explanation
Indices: 14950887--14950988 Score: 73
Period size: 21 Copynumber: 5.0 Consensus size: 20
14950877 TTGTTTTGGT
* **
14950887 TTTTTTTACTGTTTTGGTTAT
1 TTTTTTTACTGTTTTAG-TGC
*
14950908 TTTTTTTACTGTTTT-GATAC
1 TTTTTTTACTGTTTTAG-TGC
* *
14950928 TTTTTTTCATTGTTTTGGTTG-
1 TTTTTTT-ACTGTTTTAG-TGC
* *
14950949 TTTTTATGCTGTTTTAGTGC
1 TTTTTTTACTGTTTTAGTGC
14950969 TATTTTTTACTGTTTTAGTG
1 T-TTTTTTACTGTTTTAGTG
14950989 TTGTTTATGT
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
19 2 0.03
20 18 0.27
21 44 0.67
22 2 0.03
ACGTcount: A:0.11, C:0.07, G:0.16, T:0.67
Consensus pattern (20 bp):
TTTTTTTACTGTTTTAGTGC
Found at i:14951011 original size:12 final size:12
Alignment explanation
Indices: 14950996--14951070 Score: 53
Period size: 12 Copynumber: 6.3 Consensus size: 12
14950986 GTGTTGTTTA
*
14950996 TGTTGTTATTTT
1 TGTTGCTATTTT
* *
14951008 TGTTACTGTTTT
1 TGTTGCTATTTT
14951020 TGTTGCTA-TTT
1 TGTTGCTATTTT
* **
14951031 TGCTATTATTTT
1 TGTTGCTATTTT
* *
14951043 TGCTGCTGTTTT
1 TGTTGCTATTTT
* *
14951055 GGTTGTTATTTT
1 TGTTGCTATTTT
14951067 TGTT
1 TGTT
14951071 ATTTGGTTGT
Statistics
Matches: 46, Mismatches: 16, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
11 8 0.17
12 38 0.83
ACGTcount: A:0.08, C:0.07, G:0.19, T:0.67
Consensus pattern (12 bp):
TGTTGCTATTTT
Found at i:14951042 original size:23 final size:24
Alignment explanation
Indices: 14951016--14951070 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
14951006 TTTGTTACTG
14951016 TTTTTGTTGCTATTTT-GCTATTA
1 TTTTTGTTGCTATTTTGGCTATTA
* * * *
14951039 TTTTTGCTGCTGTTTTGGTTGTTA
1 TTTTTGTTGCTATTTTGGCTATTA
14951063 TTTTTGTT
1 TTTTTGTT
14951071 ATTTGGTTGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 14 0.54
24 12 0.46
ACGTcount: A:0.07, C:0.07, G:0.18, T:0.67
Consensus pattern (24 bp):
TTTTTGTTGCTATTTTGGCTATTA
Found at i:14951082 original size:11 final size:11
Alignment explanation
Indices: 14951052--14951085 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
14951042 TTGCTGCTGT
14951052 TTTGGTTGTTA
1 TTTGGTTGTTA
14951063 TTT--TTGTTA
1 TTTGGTTGTTA
14951072 TTTGGTTGTTA
1 TTTGGTTGTTA
14951083 TTT
1 TTT
14951086 TTTATACGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.43
11 12 0.57
ACGTcount: A:0.09, C:0.00, G:0.21, T:0.71
Consensus pattern (11 bp):
TTTGGTTGTTA
Found at i:14952497 original size:29 final size:28
Alignment explanation
Indices: 14952466--14952859 Score: 174
Period size: 29 Copynumber: 13.8 Consensus size: 28
14952456 ATTAGAGTCA
14952466 AAAATGGAATTTTGGAAAGTTTGGAGGT
1 AAAATGGAATTTTGGAAAGTTTGGAGGT
* *
14952494 AAAATGGTAATTTTTGGTAAA-ATCGG-GGTT
1 AAAATGG-AA-TTTTGG-AAAGTTTGGAGG-T
* *
14952524 AAAATGAAATTTTGGAAAATTT-GAGGGT
1 AAAATGGAATTTTGGAAAGTTTGGA-GGT
* * *
14952552 AAAATGACAATTTTGGTAAA-ATCGG-GGT
1 AAAATG-GAATTTTGG-AAAGTTTGGAGGT
* * *
14952580 AAAAATGGAATTTTAGAAAGTTT-AAGGG
1 -AAAATGGAATTTTGGAAAGTTTGGAGGT
* *
14952608 AAAATGGTAATTTTGGTGAAA--TCGGGGGT
1 AAAATGG-AATTTT-G-GAAAGTTTGGAGGT
* * *
14952637 AAAATGGAATTTTAGAAAG-CTCGAGGGT
1 AAAATGGAATTTTGGAAAGTTTGGA-GGT
*
14952665 AAAATGGTAATTTTGGTGAAA---TCGAGGGT
1 AAAATGG-AATTTT-G-GAAAGTTTGGA-GGT
* * *
14952694 AAAAATAGAACTTTAGAAAGTTTAGG-GGT
1 -AAAATGGAATTTTGGAAAGTTT-GGAGGT
* *
14952723 AAAATGGTAATTTTGGTAAAATTAGG-GGT
1 AAAATGG-AATTTTGG-AAAGTTTGGAGGT
*
14952752 AAAATGGAATTTTAGAAAGTTT-GAGGGT
1 AAAATGGAATTTTGGAAAGTTTGGA-GGT
*
14952780 AAAATGGTAATTTTGGTAAA-ATTGG-GGT
1 AAAATGG-AATTTTGG-AAAGTTTGGAGGT
* ** **
14952808 AAAAATGGAATTATGGAAAACTTAAAGGT
1 -AAAATGGAATTTTGGAAAGTTTGGAGGT
* *
14952837 AAAAATGTAATTTTAGAAAGTTT
1 -AAAATGGAATTTTGGAAAGTTT
14952860 TAGGGTTAAA
Statistics
Matches: 281, Mismatches: 48, Indels: 73
0.70 0.12 0.18
Matches are distributed among these distances:
26 5 0.02
27 27 0.10
28 92 0.33
29 109 0.39
30 40 0.14
31 8 0.03
ACGTcount: A:0.40, C:0.02, G:0.27, T:0.31
Consensus pattern (28 bp):
AAAATGGAATTTTGGAAAGTTTGGAGGT
Found at i:14952850 original size:57 final size:57
Alignment explanation
Indices: 14952430--14952819 Score: 493
Period size: 57 Copynumber: 6.8 Consensus size: 57
14952420 TTAAATACCC
* * ** * *
14952430 GAGGGTAAAATGGTAATTTTGATGAAATTAGAGTCAAAAATGGAATTTTGGAAAGTTT
1 GAGGGTAAAATGGTAATTTTGGTAAAATCGGGGT-AAAAATGGAATTTTAGAAAGTTT
* * * *
14952488 G-GAGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAATGAAATTTTGGAAAATTT
1 GAG-GGTAAAATGGTAA-TTTTGGTAAAATCGGGGTAAAAATGGAATTTTAGAAAGTTT
**
14952546 GAGGGTAAAATGACAATTTTGGTAAAATCGGGGTAAAAATGGAATTTTAGAAAGTTT
1 GAGGGTAAAATGGTAATTTTGGTAAAATCGGGGTAAAAATGGAATTTTAGAAAGTTT
* * * *
14952603 AAGGG-AAAATGGTAATTTTGGTGAAATCGGGGGT-AAAATGGAATTTTAGAAAGCTC
1 GAGGGTAAAATGGTAATTTTGGTAAAATC-GGGGTAAAAATGGAATTTTAGAAAGTTT
* * *
14952659 GAGGGTAAAATGGTAATTTTGGTGAAATCGAGGGTAAAAATAGAACTTTAGAAAGTTT
1 GAGGGTAAAATGGTAATTTTGGTAAAATCG-GGGTAAAAATGGAATTTTAGAAAGTTT
*
14952717 -AGGGGTAAAATGGTAATTTTGGTAAAATTAGGGGT-AAAATGGAATTTTAGAAAGTTT
1 GA-GGGTAAAATGGTAATTTTGGTAAAA-TCGGGGTAAAAATGGAATTTTAGAAAGTTT
*
14952774 GAGGGTAAAATGGTAATTTTGGTAAAATTGGGGTAAAAATGGAATT
1 GAGGGTAAAATGGTAATTTTGGTAAAATCGGGGTAAAAATGGAATT
14952820 ATGGAAAACT
Statistics
Matches: 291, Mismatches: 30, Indels: 23
0.85 0.09 0.07
Matches are distributed among these distances:
56 51 0.18
57 131 0.45
58 93 0.32
59 16 0.05
ACGTcount: A:0.39, C:0.02, G:0.28, T:0.31
Consensus pattern (57 bp):
GAGGGTAAAATGGTAATTTTGGTAAAATCGGGGTAAAAATGGAATTTTAGAAAGTTT
Found at i:14952870 original size:29 final size:28
Alignment explanation
Indices: 14952519--14953071 Score: 225
Period size: 29 Copynumber: 19.1 Consensus size: 28
14952509 GGTAAAATCG
* * *
14952519 GGGTTAAAATGAAATTTTGGAAAATTTGA
1 GGGTTAAAATGTAATTTTAGAAAGTTT-A
* * * **
14952548 GGG-TAAAATGACAATTTTGGTAAA-ATCG
1 GGGTTAAAATG-TAATTTTAG-AAAGTTTA
* *
14952576 GGGTAAAAATGGAATTTTAGAAAGTTTAA
1 GGGTTAAAATGTAATTTTAGAAAGTTT-A
* **
14952605 GGG--AAAATGGTAATTTTGGTGAAA--TCG
1 GGGTTAAAAT-GTAATTTT--AGAAAGTTTA
* * **
14952632 GGGGTAAAATGGAATTTTAGAAAGCTCGA
1 GGGTTAAAATGTAATTTTAGAAAG-TTTA
* **
14952661 GGG-TAAAATGGTAATTTTGGTGAAA-TCGA
1 GGGTTAAAAT-GTAATTTT--AGAAAGTTTA
* *
14952690 GGGTAAAAATAG-AACTTTAGAAAGTTTA
1 GGGTTAAAAT-GTAATTTTAGAAAGTTTA
* * *
14952718 GGGGTAAAATGGTAATTTTGGTAAA-ATTA
1 GGGTTAAAAT-GTAATTTTAG-AAAGTTTA
* *
14952747 GGGGTAAAATGGAATTTTAGAAAGTTTGA
1 GGGTTAAAATGTAATTTTAGAAAGTTT-A
* * *
14952776 GGG-TAAAATGGTAATTTTGGTAAA-ATTG
1 GGGTTAAAAT-GTAATTTTAG-AAAGTTTA
* * * * * *
14952804 GGGTAAAAATGGAATTATGGAAAACTTAA
1 GGGTTAAAATGTAATTTTAG-AAAGTTTA
* *
14952833 AGGTAAAAATGTAATTTTAGAAAGTTTTA
1 GGGTTAAAATGTAATTTTAGAAAG-TTTA
*
14952862 GGGTTAAAATATAATTTTAGAAAAGTTTA
1 GGGTTAAAATGTAATTTTAG-AAAGTTTA
*
14952891 GGGGTTAAAATGTAATTTTACAAAAGTTTAA
1 -GGGTTAAAATGTAATTTTA-GAAAGTTT-A
* * * * *
14952922 GGGTCAAAATATAATTTACAAAAAGTTTT
1 GGGTTAAAATGTAATTT-TAGAAAGTTTA
* *
14952951 GAGGTCAAAATATAATTTT-GTAAAAGTTTA
1 G-GGTTAAAATGTAATTTTAG--AAAGTTTA
*
14952981 GGGGTCAAAATGTAATTTATAGAAAGTTTTA
1 -GGGTTAAAATGTAATTT-TAGAAAG-TTTA
* *
14953012 GGGTT-AAATATAATTTTGGAAAAGTTTA
1 GGGTTAAAATGTAATTTTAG-AAAGTTTA
* * * *
14953040 GGGGTCAAAATATAATTTCTGGACAGTTTA
1 -GGGTTAAAATGTAATTT-TAGAAAGTTTA
14953070 GG
1 GG
14953072 AATCTCTAGG
Statistics
Matches: 410, Mismatches: 71, Indels: 86
0.72 0.13 0.15
Matches are distributed among these distances:
26 4 0.01
27 18 0.04
28 89 0.22
29 148 0.36
30 135 0.33
31 15 0.04
32 1 0.00
ACGTcount: A:0.40, C:0.03, G:0.24, T:0.33
Consensus pattern (28 bp):
GGGTTAAAATGTAATTTTAGAAAGTTTA
Found at i:14952887 original size:30 final size:30
Alignment explanation
Indices: 14952838--14953057 Score: 224
Period size: 30 Copynumber: 7.4 Consensus size: 30
14952828 CTTAAAGGTA
* *
14952838 AAAATGTAATTTTAG-AAAGTTTTAGGGTT
1 AAAATATAATTTTAGAAAAGTTTTAGGGTC
*
14952867 AAAATATAATTTTAGAAAAG-TTTAGGGGTT
1 AAAATATAATTTTAGAAAAGTTTTA-GGGTC
* * *
14952897 AAAATGTAATTTTACAAAAGTTTAAGGGTC
1 AAAATATAATTTTAGAAAAGTTTTAGGGTC
*
14952927 AAAATATAA-TTTACAAAAAGTTTT-GAGGTC
1 AAAATATAATTTTA-GAAAAGTTTTAG-GGTC
14952957 AAAATATAATTTT-GTAAAAG-TTTAGGGGTC
1 AAAATATAATTTTAG-AAAAGTTTTA-GGGTC
*
14952987 AAAATGTAATTTATAG-AAAGTTTTAGGGT-
1 AAAATATAATTT-TAGAAAAGTTTTAGGGTC
* *
14953016 TAAATATAATTTTGGAAAAG-TTTAGGGGTC
1 AAAATATAATTTTAGAAAAGTTTTA-GGGTC
14953046 AAAATATAATTT
1 AAAATATAATTT
14953058 CTGGACAGTT
Statistics
Matches: 162, Mismatches: 14, Indels: 29
0.79 0.07 0.14
Matches are distributed among these distances:
28 6 0.04
29 44 0.27
30 99 0.61
31 12 0.07
32 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.37
Consensus pattern (30 bp):
AAAATATAATTTTAGAAAAGTTTTAGGGTC
Found at i:14952901 original size:59 final size:58
Alignment explanation
Indices: 14952435--14953071 Score: 284
Period size: 57 Copynumber: 10.9 Consensus size: 58
14952425 TACCCGAGGG
* * *
14952435 TAAAATGGTAATTTTGATGAAA--TTAGAGTCAAAA-ATGGAATTTTGGAAAGTTT-GGAGG-
1 TAAAAT-GTAATTTTGGT-AAAGTTTAGGGTCAAAATAT--AATTTTAGAAAGTTTAGG-GGT
* ** * * *
14952493 TAAAATGGTAATTTTTGGTAAA-ATCGGGGTTAAAATGA-AATTTTGGAAAATTT-GAGGG-
1 TAAAAT-GTAA-TTTTGGTAAAGTTTAGGGTCAAAAT-ATAATTTTAGAAAGTTTAG-GGGT
* * ** * ** *
14952551 TAAAATGACAATTTTGGTAAA-ATCGGGGTAAAAATGGAATTTTAGAAAGTTTAAGGG-
1 TAAAATG-TAATTTTGGTAAAGTTTAGGGTCAAAATATAATTTTAGAAAGTTTAGGGGT
*** ** * *
14952608 -AAAATGGTAATTTTGGTGAAA-TCGGGGGT-AAAATGGAATTTTAGAAAG-CTCGAGGG-
1 TAAAAT-GTAATTTTGGT-AAAGTTTAGGGTCAAAATATAATTTTAGAAAGTTTAG-GGGT
** * * *
14952664 TAAAATGGTAATTTTGGTGAAA-TCGAGGGTAAAAATAGAACTTTAGAAAGTTTAGGGG-
1 TAAAAT-GTAATTTTGGT-AAAGTTTAGGGTCAAAATATAATTTTAGAAAGTTTAGGGGT
* **
14952722 TAAAATGGTAATTTTGGTAAA-ATTAGGGGT-AAAATGGAATTTTAGAAAGTTT-GAGGG-
1 TAAAAT-GTAATTTTGGTAAAGTTTA-GGGTCAAAATATAATTTTAGAAAGTTTAG-GGGT
* * * ** * * ** **
14952779 TAAAATGGTAATTTTGGTAAA-ATTGGGGTAAAAATGGAATTATGGAAAACTTAAAGGT
1 TAAAAT-GTAATTTTGGTAAAGTTTAGGGTCAAAATATAATTTTAGAAAGTTTAGGGGT
* * *
14952837 AAAAATGTAATTTTAG-AAAGTTTTAGGGTTAAAATATAATTTTAGAAAAGTTTAGGGGT
1 TAAAATGTAATTTTGGTAAAG-TTTAGGGTCAAAATATAATTTTAG-AAAGTTTAGGGGT
*** * * * *
14952896 TAAAATGTAATTTTACAAAAGTTTAAGGGTCAAAATATAATTTACAAAAAGTTTTGAGGT
1 TAAAATGTAATTTTGGTAAAGTTT-AGGGTCAAAATATAATTT-TAGAAAGTTTAGGGGT
* * *
14952956 CAAAATATAATTTT-GTAAAAGTTTAGGGGTCAAAATGTAATTTATAGAAAGTTTTA-GGGT
1 TAAAATGTAATTTTGGT-AAAGTTTA-GGGTCAAAATATAATTT-TAGAAAG-TTTAGGGGT
* * * *
14953016 T-AAATATAATTTTGGAAAAGTTTAGGGGTCAAAATATAATTTCTGGACAGTTTAGG
1 TAAAATGTAATTTTGGTAAAGTTTA-GGGTCAAAATATAATTT-TAGAAAGTTTAGG
14953072 AATCTCTAGG
Statistics
Matches: 478, Mismatches: 71, Indels: 59
0.79 0.12 0.10
Matches are distributed among these distances:
55 1 0.00
56 44 0.09
57 157 0.33
58 107 0.22
59 87 0.18
60 77 0.16
61 5 0.01
ACGTcount: A:0.40, C:0.03, G:0.24, T:0.33
Consensus pattern (58 bp):
TAAAATGTAATTTTGGTAAAGTTTAGGGTCAAAATATAATTTTAGAAAGTTTAGGGGT
Found at i:14952964 original size:90 final size:89
Alignment explanation
Indices: 14952853--14953057 Score: 263
Period size: 90 Copynumber: 2.3 Consensus size: 89
14952843 GTAATTTTAG
* *
14952853 AAAGTTTT-AGGGTTAAAATATAATTTTAG-AAAAGTTTAGGGGTTAAAATGTAATTT-TACAAA
1 AAAGTTTTGA-GGTCAAAATATAATTTT-GTAAAAGTTTAGGGGTCAAAATGTAATTTATA-AAA
14952915 AGTTTAAGGGTCAAAATATAATTTACAA
63 AGTTTAAGGGT-AAAATATAATTTACAA
*
14952943 AAAGTTTTGAGGTCAAAATATAATTTTGTAAAAGTTTAGGGGTCAAAATGTAATTTATAGAAAGT
1 AAAGTTTTGAGGTCAAAATATAATTTTGTAAAAGTTTAGGGGTCAAAATGTAATTTATAAAAAGT
* * ***
14953008 TTTAGGGTTAAATATAATTTTGGA
66 TTAAGGGTAAAATATAATTTACAA
* *
14953032 AAAGTTTAGGGGTCAAAATATAATTT
1 AAAGTTTTGAGGTCAAAATATAATTT
14953058 CTGGACAGTT
Statistics
Matches: 102, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
89 37 0.36
90 62 0.61
91 3 0.03
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.37
Consensus pattern (89 bp):
AAAGTTTTGAGGTCAAAATATAATTTTGTAAAAGTTTAGGGGTCAAAATGTAATTTATAAAAAGT
TTAAGGGTAAAATATAATTTACAA
Found at i:14954913 original size:20 final size:20
Alignment explanation
Indices: 14954888--14954926 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
14954878 AATTTAAAGC
14954888 AAATTTAAATTTAAAAATAT
1 AAATTTAAATTTAAAAATAT
14954908 AAATTTAAATTTAAAAATA
1 AAATTTAAATTTAAAAATA
14954927 AATTTGAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AAATTTAAATTTAAAAATAT
Found at i:14955400 original size:50 final size:49
Alignment explanation
Indices: 14955346--14955802 Score: 223
Period size: 50 Copynumber: 9.1 Consensus size: 49
14955336 GGGTTCGTCG
* *
14955346 TTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGGTACTAGATCTGCCA
1 TTGCGACTTAGACCTTTCCCTTTTGTAT-TTTGAGGTACTAGATCTGCCA
* * * * * * *
14955396 TTGCGATATTAGATCTTTCCCTTATG-CTTTTGAGGTAC-ACGGTCCGCCG
1 TTGCGA-CTTAGACCTTTCCCTTTTGTATTTTGAGGTACTA-GATCTGCCA
* * *
14955445 TTGTGACTTAGACCTTTCCCTTTTCTGT-TTTTGCGGTACTGGATCTGCCA
1 TTGCGACTTAGACCTTTCCC-TTT-TGTATTTTGAGGTACTAGATCTGCCA
* * * * * * * * *
14955495 TTGTGGTCTTAGATCTTTCCCTTCCATG-CTTCTGAGGTAC-ACGGTCCGCCG
1 TTG-CGACTTAGACCTTTCCCTT--TTGTATTTTGAGGTACTA-GATCTGCCA
* * * *
14955546 TTGCGACTTAGACCTTTCTCTGTTATGT-TTTTGCGGTAATGGATCTGCCA
1 TTGCGACTTAGACCTTTCCCT-TT-TGTATTTTGAGGTACTAGATCTGCCA
* * * * * *
14955596 TTGCGGTCTTAGATCTTTCCCTTCCATGT-TTCTGAGGTAC-ACGGTCCGCCA
1 TTGC-GACTTAGACCTTTCCCTT--TTGTATTTTGAGGTACTA-GATCTGCCA
* * * *
14955647 TTGCGACTTAGACCTTCCCCTTTTGTGTTTTTGTGGTACTGGATCTGCCA
1 TTGCGACTTAGACCTTTCCCTTTTGT-ATTTTGAGGTACTAGATCTGCCA
* * ** * * * *
14955697 TTGCAGTCTTAGATCTTTCCCTCCCATG-CTTCTGAGGTAC-ACAGTCTGCCG
1 TTGC-GACTTAGACCTTTCCCT--TTTGTATTTTGAGGTACTAGA-TCTGCCA
* * * * *
14955748 TTGCGACTTAGACCTTTCCTTTTTGTGTTTTTGCGGTACTGGATCTACCA
1 TTGCGACTTAGACCTTTCCCTTTTGT-ATTTTGAGGTACTAGATCTGCCA
14955798 TTGCG
1 TTGCG
14955803 GTATTCGATC
Statistics
Matches: 296, Mismatches: 82, Indels: 58
0.68 0.19 0.13
Matches are distributed among these distances:
48 18 0.06
49 22 0.07
50 134 0.45
51 120 0.41
53 2 0.01
ACGTcount: A:0.14, C:0.25, G:0.21, T:0.39
Consensus pattern (49 bp):
TTGCGACTTAGACCTTTCCCTTTTGTATTTTGAGGTACTAGATCTGCCA
Found at i:14955513 original size:51 final size:51
Alignment explanation
Indices: 14955359--14956021 Score: 304
Period size: 51 Copynumber: 13.1 Consensus size: 51
14955349 CGACTTAAAC
* * * * * * *
14955359 CTTTCCCTTTTGTATCTTTGTGGTACTAGATCTGCCATTGCGATATTAGAT
1 CTTTCCCTTTTCTGTTTTTGAGGTACTGGATCTGCCATTGCGGTCTTAGAT
* * * * * * * *
14955410 CTTTCCC--TTATGCTTTTGAGGTACACGG-TCCGCCGTTG-TGACTTAGAC
1 CTTTCCCTTTTCTGTTTTTGAGGTAC-TGGATCTGCCATTGCGGTCTTAGAT
* *
14955458 CTTTCCCTTTTCTGTTTTTGCGGTACTGGATCTGCCATTGTGGTCTTAGAT
1 CTTTCCCTTTTCTGTTTTTGAGGTACTGGATCTGCCATTGCGGTCTTAGAT
* * * * * * * *
14955509 CTTTCCC-TTCCATGCTTCTGAGGTACACGG-TCCGCCGTTGC-GACTTAGAC
1 CTTTCCCTTTTC-TGTTTTTGAGGTAC-TGGATCTGCCATTGCGGTCTTAGAT
* * * * *
14955559 CTTTCTCTGTTATGTTTTTGCGGTAATGGATCTGCCATTGCGGTCTTAGAT
1 CTTTCCCTTTTCTGTTTTTGAGGTACTGGATCTGCCATTGCGGTCTTAGAT
* * * * * *
14955610 CTTTCCC-TTCCATGTTTCTGAGGTACACGG-TCCGCCATTGC-GACTTAGAC
1 CTTTCCCTTTTC-TGTTTTTGAGGTAC-TGGATCTGCCATTGCGGTCTTAGAT
* * * *
14955660 CTTCCCCTTTTGTGTTTTTGTGGTACTGGATCTGCCATTGCAGTCTTAGAT
1 CTTTCCCTTTTCTGTTTTTGAGGTACTGGATCTGCCATTGCGGTCTTAGAT
** * * ** * * *
14955711 CTTTCCC-TCCCATGCTTCTGAGGTAC-ACAGTCTGCCGTTGC-GACTTAGAC
1 CTTTCCCTTTTC-TGTTTTTGAGGTACTGGA-TCTGCCATTGCGGTCTTAGAT
* * * * * *
14955761 CTTTCCTTTTTGTGTTTTTGCGGTACTGGATCTACCATTGCGGTATTCGAT
1 CTTTCCCTTTTCTGTTTTTGAGGTACTGGATCTGCCATTGCGGTCTTAGAT
* * * * ** * * * *
14955812 CTTTCCC-TTCCATGCTTCTAAGGTA-TACAGTCCGCCGTTGC-GACTTAGAC
1 CTTTCCCTTTTC-TGTTTTTGAGGTACTGGA-TCTGCCATTGCGGTCTTAGAT
* * * * *
14955862 CTTTCTCTTTTTATGTTTTTGTGGTACTGGATCCGCCGTTGCGGTCTTAGAT
1 CTTTC-CCTTTTCTGTTTTTGAGGTACTGGATCTGCCATTGCGGTCTTAGAT
* * * * ** * * * *
14955914 CTTT-CCTTTCCATGTTTCTAAGGTACACGG-TCCACCATTG-TGACCTAGAC
1 CTTTCCCTTTTC-TGTTTTTGAGGTAC-TGGATCTGCCATTGCGGTCTTAGAT
* * * * *
14955964 CTTTCCCTTTTATGTTTTT-ACAGTACTGGATTTGTCGTTGCGGTCTTAGAT
1 CTTTCCCTTTTCTGTTTTTGA-GGTACTGGATCTGCCATTGCGGTCTTAGAT
14956015 CTTTCCC
1 CTTTCCC
14956022 GTTGTATTTC
Statistics
Matches: 433, Mismatches: 147, Indels: 64
0.67 0.23 0.10
Matches are distributed among these distances:
48 12 0.03
49 29 0.07
50 172 0.40
51 199 0.46
52 21 0.05
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.40
Consensus pattern (51 bp):
CTTTCCCTTTTCTGTTTTTGAGGTACTGGATCTGCCATTGCGGTCTTAGAT
Found at i:14955575 original size:101 final size:101
Alignment explanation
Indices: 14955344--14956021 Score: 901
Period size: 101 Copynumber: 6.7 Consensus size: 101
14955334 CCGGGTTCGT
* * * * * * * *
14955344 CGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGGTACTAGATCTGCCATTGCGATATTAGA
1 CGTTGCGACTTAGACCTTTCCCTTTTATGTTTTTGCGGTACTGGATCTGCCATTGCGGTCTTAGA
*
14955409 TCTTTCCCTT--ATGCTTTTGAGGTACACGGTCCGC
66 TCTTTCCCTTCCATGCTTCTGAGGTACACGGTCCGC
* * *
14955443 CGTTGTGACTTAGACCTTTCCCTTTTCTGTTTTTGCGGTACTGGATCTGCCATTGTGGTCTTAGA
1 CGTTGCGACTTAGACCTTTCCCTTTTATGTTTTTGCGGTACTGGATCTGCCATTGCGGTCTTAGA
14955508 TCTTTCCCTTCCATGCTTCTGAGGTACACGGTCCGC
66 TCTTTCCCTTCCATGCTTCTGAGGTACACGGTCCGC
* * *
14955544 CGTTGCGACTTAGACCTTTCTCTGTTATGTTTTTGCGGTAATGGATCTGCCATTGCGGTCTTAGA
1 CGTTGCGACTTAGACCTTTCCCTTTTATGTTTTTGCGGTACTGGATCTGCCATTGCGGTCTTAGA
*
14955609 TCTTTCCCTTCCATGTTTCTGAGGTACACGGTCCGC
66 TCTTTCCCTTCCATGCTTCTGAGGTACACGGTCCGC
* * * * *
14955645 CATTGCGACTTAGACCTTCCCCTTTTGTGTTTTTGTGGTACTGGATCTGCCATTGCAGTCTTAGA
1 CGTTGCGACTTAGACCTTTCCCTTTTATGTTTTTGCGGTACTGGATCTGCCATTGCGGTCTTAGA
* * *
14955710 TCTTTCCCTCCCATGCTTCTGAGGTACACAGTCTGC
66 TCTTTCCCTTCCATGCTTCTGAGGTACACGGTCCGC
* * * * *
14955746 CGTTGCGACTTAGACCTTTCCTTTTTGTGTTTTTGCGGTACTGGATCTACCATTGCGGTATTCGA
1 CGTTGCGACTTAGACCTTTCCCTTTTATGTTTTTGCGGTACTGGATCTGCCATTGCGGTCTTAGA
* * *
14955811 TCTTTCCCTTCCATGCTTCTAAGGTATACAGTCCGC
66 TCTTTCCCTTCCATGCTTCTGAGGTACACGGTCCGC
* * * *
14955847 CGTTGCGACTTAGACCTTTCTCTTTTTATGTTTTTGTGGTACTGGATCCGCCGTTGCGGTCTTAG
1 CGTTGCGACTTAGACCTTTC-CCTTTTATGTTTTTGCGGTACTGGATCTGCCATTGCGGTCTTAG
* * * *
14955912 ATCTTTCCTTTCCATGTTTCTAAGGTACACGGTCCAC
65 ATCTTTCCCTTCCATGCTTCTGAGGTACACGGTCCGC
* * * * * * * *
14955949 CATTGTGACCTAGACCTTTCCCTTTTATGTTTTTACAGTACTGGATTTGTCGTTGCGGTCTTAGA
1 CGTTGCGACTTAGACCTTTCCCTTTTATGTTTTTGCGGTACTGGATCTGCCATTGCGGTCTTAGA
14956014 TCTTTCCC
66 TCTTTCCC
14956022 GTTGTATTTC
Statistics
Matches: 511, Mismatches: 65, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
99 65 0.13
101 360 0.70
102 86 0.17
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.40
Consensus pattern (101 bp):
CGTTGCGACTTAGACCTTTCCCTTTTATGTTTTTGCGGTACTGGATCTGCCATTGCGGTCTTAGA
TCTTTCCCTTCCATGCTTCTGAGGTACACGGTCCGC
Found at i:14968103 original size:3 final size:3
Alignment explanation
Indices: 14968095--14968131 Score: 65
Period size: 3 Copynumber: 12.0 Consensus size: 3
14968085 GGATTCTTTC
14968095 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
14968132 AAAGCATTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14968897 original size:6 final size:6
Alignment explanation
Indices: 14968886--14968936 Score: 61
Period size: 6 Copynumber: 8.5 Consensus size: 6
14968876 AATTTAAAAC
*
14968886 AAATTT AAATTT AAAAATAT AAATTT AAATTT AAA--T AAATTT AAATTT
1 AAATTT AAATTT --AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
14968934 AAA
1 AAA
14968937 AATAAATTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
4 4 0.10
6 30 0.77
8 5 0.13
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (6 bp):
AAATTT
Done.