Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 41 of 135
Found at i:15233442 original size:12 final size:12
Alignment explanation
Indices: 15233427--15233466 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
15233417 TAAAATATAT
15233427 TTTTATATTTTA
1 TTTTATATTTTA
15233439 TTTTA-ATTTTAA
1 TTTTATATTTT-A
*
15233451 TTTTATAATTTA
1 TTTTATATTTTA
15233463 TTTT
1 TTTT
15233467 GAATTTATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 5 0.20
12 16 0.64
13 4 0.16
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTATATTTTA
Found at i:15233627 original size:20 final size:20
Alignment explanation
Indices: 15233594--15233632 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15233584 TGTGAAGCTT
*
15233594 ATTAAAGAATATTTTATATA
1 ATTAAAGAAAATTTTATATA
*
15233614 ATTAATGAAAATTTTATAT
1 ATTAAAGAAAATTTTATAT
15233633 TTATTTAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
ATTAAAGAAAATTTTATATA
Found at i:15234286 original size:26 final size:22
Alignment explanation
Indices: 15234257--15234322 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 22
15234247 AGTATAAATT
15234257 AAAATTAATCATAAATAATTATTATA
1 AAAATTAA--ATAAA-AATT-TTATA
15234283 AAAATTAAATAAAAATTTTATA
1 AAAATTAAATAAAAATTTTATA
* *
15234305 TTAATATTAAATAGAAAT
1 --AAAATTAAATAAAAAT
15234323 AATCCCGTCC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
22 5 0.14
23 4 0.11
24 19 0.53
26 8 0.22
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
AAAATTAAATAAAAATTTTATA
Found at i:15234925 original size:20 final size:19
Alignment explanation
Indices: 15234894--15234943 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 19
15234884 AAATTTTTTG
15234894 TTTAATTT-TATAATAATAAT
1 TTTAATTTATAT-A-AATAAT
15234914 TTATAATTTATATAAATAAT
1 TT-TAATTTATATAAATAAT
15234934 TTTAATTTAT
1 TTTAATTTAT
15234944 TCTTAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.29
20 10 0.36
21 7 0.25
22 3 0.11
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTAATTTATATAAATAAT
Found at i:15235383 original size:25 final size:25
Alignment explanation
Indices: 15235355--15235406 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
15235345 TATTTCATTT
*
15235355 TATTTTAATATTTAATA-TTTTTATA
1 TATTTT-ATATTTAAAATTTTTTATA
*
15235380 TATTTTTTATTTAAAATTTTTTATA
1 TATTTTATATTTAAAATTTTTTATA
15235405 TA
1 TA
15235407 ATCATCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (25 bp):
TATTTTATATTTAAAATTTTTTATA
Found at i:15236525 original size:4 final size:4
Alignment explanation
Indices: 15236516--15236549 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
15236506 AACTAATCTA
15236516 TTCC TTCC TTCC TTCC TTCC TTCC TTCC TTCC TT
1 TTCC TTCC TTCC TTCC TTCC TTCC TTCC TTCC TT
15236550 TACTTTTACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (4 bp):
TTCC
Found at i:15245176 original size:18 final size:17
Alignment explanation
Indices: 15245153--15245192 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
15245143 AAAAATTATA
15245153 AAAAAAAGCTTAACATTT
1 AAAAAAAGCTTAA-ATTT
* *
15245171 AAAAAATGTTTAAATTT
1 AAAAAAAGCTTAAATTT
15245188 AAAAA
1 AAAAA
15245193 TTAAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (17 bp):
AAAAAAAGCTTAAATTT
Found at i:15245292 original size:12 final size:12
Alignment explanation
Indices: 15245277--15245315 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
15245267 AAAATTAGTT
15245277 AAAATTTTAAAA
1 AAAATTTTAAAA
**
15245289 AAAATTACAAAA
1 AAAATTTTAAAA
*
15245301 AATATTTTAAAA
1 AAAATTTTAAAA
15245313 AAA
1 AAA
15245316 TCAATAAAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (12 bp):
AAAATTTTAAAA
Found at i:15247505 original size:20 final size:21
Alignment explanation
Indices: 15247480--15247528 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
15247470 ATTTATTTAC
15247480 TTTTAAAATTTT-ATATATTT
1 TTTTAAAATTTTCATATATTT
* *
15247500 TTTTAAGATTTTCATGTATTT
1 TTTTAAAATTTTCATATATTT
*
15247521 TTATAAAA
1 TTTTAAAA
15247529 AAAAACATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (21 bp):
TTTTAAAATTTTCATATATTT
Found at i:15249344 original size:23 final size:23
Alignment explanation
Indices: 15249269--15249344 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
15249259 AAAAAGCATA
* *
15249269 ATGTGTTTCTGTTATTCAGCACTT
1 ATGTGCTTATGTTATT-AGCACTT
**
15249293 ATGTGCTCGTGTT-TCTAGCACTT
1 ATGTGCTTATGTTAT-TAGCACTT
** *
15249316 CGGTGCTTATGTTATTTGCACTT
1 ATGTGCTTATGTTATTAGCACTT
15249339 ATGTGC
1 ATGTGC
15249345 CTCTAATCTT
Statistics
Matches: 40, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
23 28 0.70
24 12 0.30
ACGTcount: A:0.14, C:0.18, G:0.21, T:0.46
Consensus pattern (23 bp):
ATGTGCTTATGTTATTAGCACTT
Found at i:15249412 original size:24 final size:24
Alignment explanation
Indices: 15249385--15249441 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
15249375 TCTTCTTTCC
15249385 ATATGCACTC-GCGATATTCGCGCT
1 ATATGCAC-CAGCGATATTCGCGCT
*
15249409 ATATGCACCAGCGATATTCGTGCT
1 ATATGCACCAGCGATATTCGCGCT
15249433 ATATGCACC
1 ATATGCACC
15249442 CATGGTATAC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 1 0.03
24 30 0.97
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (24 bp):
ATATGCACCAGCGATATTCGCGCT
Found at i:15249547 original size:28 final size:28
Alignment explanation
Indices: 15249515--15249568 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
15249505 TATGTGCTCC
*
15249515 TAACAATCGTTACAAATTGTGA-ATACTG
1 TAACAATCGTGAC-AATTGTGATATACTG
*
15249543 TAACAATTGTGACAATTGTGATATAC
1 TAACAATCGTGACAATTGTGATATAC
15249569 GTGCTCTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (28 bp):
TAACAATCGTGACAATTGTGATATACTG
Found at i:15253692 original size:11 final size:11
Alignment explanation
Indices: 15253676--15253701 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15253666 ATAATATATA
15253676 TGATTTTAATT
1 TGATTTTAATT
15253687 TGATTTTAATT
1 TGATTTTAATT
15253698 TGAT
1 TGAT
15253702 CGTAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.62
Consensus pattern (11 bp):
TGATTTTAATT
Found at i:15258582 original size:28 final size:28
Alignment explanation
Indices: 15258546--15258601 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
15258536 AAACTAGACT
*
15258546 TCATTTATTTTATTTTAATTAGAATAAG
1 TCATCTATTTTATTTTAATTAGAATAAG
15258574 TCATCTATTTTATTTTAATTAGAATAAG
1 TCATCTATTTTATTTTAATTAGAATAAG
15258602 GTGTTTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (28 bp):
TCATCTATTTTATTTTAATTAGAATAAG
Found at i:15262904 original size:17 final size:17
Alignment explanation
Indices: 15262882--15262920 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
15262872 AGGTGAAGAA
* * *
15262882 CTTGTTTGTTGAGAGTT
1 CTTGTTCGTAGAGAATT
15262899 CTTGTTCGTAGAGAATT
1 CTTGTTCGTAGAGAATT
15262916 CTTGT
1 CTTGT
15262921 CATGGTGGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.15, C:0.10, G:0.26, T:0.49
Consensus pattern (17 bp):
CTTGTTCGTAGAGAATT
Found at i:15266478 original size:135 final size:135
Alignment explanation
Indices: 15266245--15266510 Score: 361
Period size: 135 Copynumber: 2.0 Consensus size: 135
15266235 CCAATTTACT
* * * * ** *
15266245 TGCAGGGGAAGAGTTTCAACTTTGCTTGGCAGTGATTTCCGAGATACGATGGACCAATTAATGAC
1 TGCAGGGGAAGAGTTTCAACTCTACTTGACAGTGATTTCCGAGAGAAAATGAACCAATTAATGAC
** * *
15266310 TTCTCGTGTACAAATGCAAGCGGATGGGGCTGAAAGTCAACAAGAAGTGGATGATAAGGATGGAA
66 TTCTCGTGTACAAATGCAAGCGGATGGAACTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
15266375 TTATA
131 TTATA
* * *
15266380 TGCAGGGGAAGAGTTTCAACTCTATTTGACAGTGATTTCCTAGAGAAAATGAACCGATTAATGAC
1 TGCAGGGGAAGAGTTTCAACTCTACTTGACAGTGATTTCCGAGAGAAAATGAACCAATTAATGAC
* * * * *
15266445 TTCTCGTGTAGAAATGCAAGCTGATGTAACTGAAAGTCAACGAGAAGTTGAGGATAAGGAAGGAA
66 TTCTCGTGTACAAATGCAAGCGGATGGAACTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
15266510 T
131 T
15266511 GGTCGAACCC
Statistics
Matches: 112, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
135 112 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (135 bp):
TGCAGGGGAAGAGTTTCAACTCTACTTGACAGTGATTTCCGAGAGAAAATGAACCAATTAATGAC
TTCTCGTGTACAAATGCAAGCGGATGGAACTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
TTATA
Found at i:15266538 original size:3 final size:3
Alignment explanation
Indices: 15266530--15266625 Score: 111
Period size: 3 Copynumber: 32.0 Consensus size: 3
15266520 CACGTCTTAC
* * * *
15266530 GAA GAA GAA GAG GAA GAA GAA GAA GAG GAA GAA GAA GAT GAT GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* * * * *
15266578 GAA GAA GAA GAA GAA TAT GAA GAT GAA GAT GAA GAT GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
15266626 AGGAGCTTAA
Statistics
Matches: 77, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.58, C:0.00, G:0.34, T:0.07
Consensus pattern (3 bp):
GAA
Found at i:15270554 original size:23 final size:22
Alignment explanation
Indices: 15270528--15270578 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
15270518 CCATTCACTT
*
15270528 AAAATTTTATAAAAATATATAAA
1 AAAATTCTATAAAAAT-TATAAA
**
15270551 AAAAAACTATAAAAATTATAAA
1 AAAATTCTATAAAAATTATAAA
*
15270573 ATAATT
1 AAAATT
15270579 AAAGAAAATA
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATTCTATAAAAATTATAAA
Found at i:15285066 original size:17 final size:17
Alignment explanation
Indices: 15285035--15285068 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15285025 AAAAGGGAAA
*
15285035 AGTTTTTAGGGTTTTAT
1 AGTTTTTAGGATTTTAT
*
15285052 AGTTTTTAGTATTTTAT
1 AGTTTTTAGGATTTTAT
15285069 TCTTAAATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.62
Consensus pattern (17 bp):
AGTTTTTAGGATTTTAT
Found at i:15286504 original size:20 final size:20
Alignment explanation
Indices: 15286481--15286543 Score: 69
Period size: 19 Copynumber: 3.2 Consensus size: 20
15286471 ATTTACAAAA
15286481 AAAAAAT-AAAATAATTTTT
1 AAAAAATCAAAATAATTTTT
*
15286500 CAAAAATTCAAAATAATTTTT
1 -AAAAAATCAAAATAATTTTT
* *
15286521 -AAAATTCAAAAT-ATTTAT
1 AAAAAATCAAAATAATTTTT
15286539 AAAAA
1 AAAAA
15286544 TTTCAGATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
18 5 0.13
19 16 0.41
20 6 0.15
21 12 0.31
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAAATCAAAATAATTTTT
Found at i:15286512 original size:21 final size:20
Alignment explanation
Indices: 15286488--15286545 Score: 84
Period size: 19 Copynumber: 3.0 Consensus size: 20
15286478 AAAAAAAAAT
15286488 AAAATAATTTTTCAAAAATTC
1 AAAATAATTTTT-AAAAATTC
15286509 AAAATAATTTTT-AAAATTC
1 AAAATAATTTTTAAAAATTC
*
15286528 AAAAT-ATTTATAAAAATT
1 AAAATAATTTTTAAAAATT
15286546 TCAGATTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 5 0.14
19 18 0.51
21 12 0.34
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAATAATTTTTAAAAATTC
Found at i:15287513 original size:2 final size:2
Alignment explanation
Indices: 15287506--15287535 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15287496 TTGATGAATG
15287506 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15287536 GCGCAGGTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15290456 original size:34 final size:34
Alignment explanation
Indices: 15290358--15290458 Score: 141
Period size: 34 Copynumber: 3.0 Consensus size: 34
15290348 GTGTCATTTT
* * *
15290358 TACATTCTAA-TTCTTCAGTTTGAAAACTTAAAA
1 TACATACTAATTTCTTGAGTTTGAAAACTTACAA
*
15290391 TACATATTAATTTCTTGAGTTTGAAAACTTACAA
1 TACATACTAATTTCTTGAGTTTGAAAACTTACAA
* *
15290425 TACATACTGATTTCTTGAGCTTGAAAACTTACAA
1 TACATACTAATTTCTTGAGTTTGAAAACTTACAA
15290459 AGTGAGTTGT
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
33 8 0.13
34 52 0.87
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.39
Consensus pattern (34 bp):
TACATACTAATTTCTTGAGTTTGAAAACTTACAA
Found at i:15295100 original size:88 final size:86
Alignment explanation
Indices: 15294963--15295130 Score: 201
Period size: 88 Copynumber: 1.9 Consensus size: 86
15294953 AAGAAAACAA
* * * *
15294963 AGTTCTTATTAGAATATTCTCAAAGAATGTTAGTAAGACATTAGCTTGGTTTTTTTAATCACGGA
1 AGTTCTTATTAGAAAATTCTCAAAGAATGCTAGCAAGACATTAGCTTGG-TGTTTTAATCACGGA
15295028 TCATTTTACATAAATAGCACCTT
65 -CATTTTACATAAATAGCACCTT
* * * * ** *
15295051 AGTTTTTATTAGAAAATTTTCTATGAATGCTAGCAAGACATTCTCTTGGTGTTTTAATCAGGGAC
1 AGTTCTTATTAGAAAATTCTCAAAGAATGCTAGCAAGACATTAGCTTGGTGTTTTAATCACGGAC
* *
15295116 CTTTTACATGAATAG
66 ATTTTACATAAATAG
15295131 TAGGTGCTGC
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
86 14 0.21
87 13 0.19
88 40 0.60
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (86 bp):
AGTTCTTATTAGAAAATTCTCAAAGAATGCTAGCAAGACATTAGCTTGGTGTTTTAATCACGGAC
ATTTTACATAAATAGCACCTT
Found at i:15298422 original size:15 final size:15
Alignment explanation
Indices: 15298404--15298442 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
15298394 CTCGACTCGA
*
15298404 TTTGATTCGAAATTT
1 TTTGAATCGAAATTT
15298419 TTTGAAT-GAAATTT
1 TTTGAATCGAAATTT
*
15298433 TTTGACTCGA
1 TTTGAATCGA
15298443 TTCGATTCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.28, C:0.08, G:0.15, T:0.49
Consensus pattern (15 bp):
TTTGAATCGAAATTT
Found at i:15300596 original size:26 final size:26
Alignment explanation
Indices: 15300561--15300643 Score: 123
Period size: 26 Copynumber: 3.2 Consensus size: 26
15300551 AGTGGATCTG
15300561 AGGA-CCTTGAGTTTGAGTTGGTCGA
1 AGGACCCTTGAGTTTGAGTTGGTCGA
* * *
15300586 AGGTCCCTTGAGTTTGAGTGGGTCTA
1 AGGACCCTTGAGTTTGAGTTGGTCGA
*
15300612 AAGACCCTTGAGTTTGAGTTGGTCGA
1 AGGACCCTTGAGTTTGAGTTGGTCGA
15300638 AGGACC
1 AGGACC
15300644 ATGATCGGGT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 3 0.06
26 46 0.94
ACGTcount: A:0.20, C:0.16, G:0.34, T:0.30
Consensus pattern (26 bp):
AGGACCCTTGAGTTTGAGTTGGTCGA
Found at i:15302798 original size:18 final size:18
Alignment explanation
Indices: 15302756--15302798 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
15302746 TTTCAATTAA
*
15302756 AATCGAATTAATTGATTG
1 AATCGATTTAATTGATTG
*
15302774 AACCGATTTAATTCGATT-
1 AATCGATTTAATT-GATTG
15302792 AATCGAT
1 AATCGAT
15302799 CTAGTTTGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (18 bp):
AATCGATTTAATTGATTG
Found at i:15313371 original size:2 final size:2
Alignment explanation
Indices: 15313364--15313391 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15313354 AAGAGGGATA
15313364 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15313392 TTATCTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15320711 original size:13 final size:13
Alignment explanation
Indices: 15320693--15320717 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15320683 TGAAATACTG
15320693 AGATTTCAACTTT
1 AGATTTCAACTTT
15320706 AGATTTCAACTT
1 AGATTTCAACTT
15320718 AGAAAAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (13 bp):
AGATTTCAACTTT
Found at i:15322209 original size:18 final size:18
Alignment explanation
Indices: 15322186--15322230 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
15322176 TAATTCACAT
15322186 ATTTTATAATTTTTAATA
1 ATTTTATAATTTTTAATA
* *
15322204 ATTTTATAGTTTTTAATT
1 ATTTTATAATTTTTAATA
15322222 ATTTCTATA
1 ATTT-TATA
15322231 TACCTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (18 bp):
ATTTTATAATTTTTAATA
Found at i:15322948 original size:23 final size:23
Alignment explanation
Indices: 15322922--15322991 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
15322912 TTCATTTAAC
15322922 TTAATCGAACATGTTCACGAACA
1 TTAATCGAACATGTTCACGAACA
* * * *
15322945 TTAAACTACCATGTTCATGAACA
1 TTAATCGAACATGTTCACGAACA
*
15322968 TATAATTGAACATGTTCACGAACA
1 T-TAATCGAACATGTTCACGAACA
15322992 ATTTCATGAA
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
23 20 0.54
24 17 0.46
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (23 bp):
TTAATCGAACATGTTCACGAACA
Found at i:15324295 original size:9 final size:10
Alignment explanation
Indices: 15324255--15324298 Score: 51
Period size: 9 Copynumber: 4.8 Consensus size: 10
15324245 CAGACATTAT
15324255 AAAAAT-AGA
1 AAAAATAAGA
*
15324264 AGAAAT-A-A
1 AAAAATAAGA
15324272 AAAAATAAGA
1 AAAAATAAGA
15324282 AAAAA-AAGA
1 AAAAATAAGA
15324291 AAAAATAA
1 AAAAATAA
15324299 AGAAGGATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
8 6 0.20
9 16 0.53
10 8 0.27
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (10 bp):
AAAAATAAGA
Found at i:15324311 original size:36 final size:35
Alignment explanation
Indices: 15324255--15324335 Score: 85
Period size: 36 Copynumber: 2.3 Consensus size: 35
15324245 CAGACATTAT
15324255 AAAAATAGAAGAAATAAAAAAATAAGAA-AAAAAAGA
1 AAAAATA-AAGAAATAAAAAAATAA-AAGAAAAAAGA
* *
15324291 AAAAATAAAGAAGGAT-AAAAAGTAAAAGAAAAAAGC
1 AAAAATAAAGAA--ATAAAAAAATAAAAGAAAAAAGA
*
15324327 AAAATTAAA
1 AAAAATAAA
15324336 AATATCTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
35 7 0.18
36 30 0.77
37 2 0.05
ACGTcount: A:0.77, C:0.01, G:0.12, T:0.10
Consensus pattern (35 bp):
AAAAATAAAGAAATAAAAAAATAAAAGAAAAAAGA
Found at i:15325081 original size:17 final size:17
Alignment explanation
Indices: 15325059--15325093 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
15325049 TATGAATTAG
15325059 TTTTATTTAAAATTATT
1 TTTTATTTAAAATTATT
* *
15325076 TTTTATTTTATATTATT
1 TTTTATTTAAAATTATT
15325093 T
1 T
15325094 CGCGGATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTATTTAAAATTATT
Found at i:15325906 original size:2 final size:2
Alignment explanation
Indices: 15325899--15325938 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
15325889 TAAGATAATG
15325899 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15325939 TAATTTTTAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15341166 original size:11 final size:11
Alignment explanation
Indices: 15341150--15341182 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
15341140 AGTAAAATCA
15341150 TTAATATTAAG
1 TTAATATTAAG
15341161 TTAATATT--G
1 TTAATATTAAG
15341170 TTAATATTAAG
1 TTAATATTAAG
15341181 TT
1 TT
15341183 GAATCGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.45
11 11 0.55
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (11 bp):
TTAATATTAAG
Found at i:15342842 original size:21 final size:19
Alignment explanation
Indices: 15342818--15342857 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
15342808 ATATAATCAG
15342818 TTTGCAGCACCTATTTTAAAA
1 TTTGCAGCA-C-ATTTTAAAA
*
15342839 TTTGCAGTACATTTTAAAA
1 TTTGCAGCACATTTTAAAA
15342858 ATTACATGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 1 0.06
21 8 0.44
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (19 bp):
TTTGCAGCACATTTTAAAA
Found at i:15349425 original size:51 final size:51
Alignment explanation
Indices: 15349322--15349550 Score: 250
Period size: 51 Copynumber: 4.5 Consensus size: 51
15349312 TAATATTCAT
** ** * * *
15349322 GATGACATATAGTCATCGGACCTCTTGTTCCGTATAGTAATTCATATACTCAC
1 GATGACACCTAGTCATCGGACCT-TTAATCCGTAAAG-GATTCATTTACTCAC
* * * * *
15349375 AATAACA-CTGAGTCATCGGACCTTTAATCCATCATGGATTCATTTACTCAC
1 GATGACACCT-AGTCATCGGACCTTTAATCCGTAAAGGATTCATTTACTCAC
*
15349426 GATGACACCTAGTCATCGGACCTTTAATCTGTAAAGGATTCATTTACTCAC
1 GATGACACCTAGTCATCGGACCTTTAATCCGTAAAGGATTCATTTACTCAC
*
15349477 GATGACACCTAG---TCGAACCTTTAATCCGTAAAGGATTCATTTACTCAC
1 GATGACACCTAGTCATCGGACCTTTAATCCGTAAAGGATTCATTTACTCAC
* *
15349525 GATGACACTTAGTCATCAGATCCTTT
1 GATGACACCTAGTCATCGGA-CCTTT
15349551 CGTTTATAGC
Statistics
Matches: 148, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
48 45 0.30
51 70 0.47
52 15 0.10
53 18 0.12
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (51 bp):
GATGACACCTAGTCATCGGACCTTTAATCCGTAAAGGATTCATTTACTCAC
Found at i:15349516 original size:48 final size:48
Alignment explanation
Indices: 15349394--15349538 Score: 209
Period size: 48 Copynumber: 3.0 Consensus size: 48
15349384 GAGTCATCGG
* * * *
15349394 ACCTTTAATCCATCATGGATTCATTTACTCACGATGACACCTAGTCATCGG
1 ACCTTTAATCCGTAAAGGATTCATTTACTCACGATGACACCTAG---TCGA
*
15349445 ACCTTTAATCTGTAAAGGATTCATTTACTCACGATGACACCTAGTCGA
1 ACCTTTAATCCGTAAAGGATTCATTTACTCACGATGACACCTAGTCGA
*
15349493 ACCTTTAATCCGTAAAGGATTCATTTACTCACGATGACACTTAGTC
1 ACCTTTAATCCGTAAAGGATTCATTTACTCACGATGACACCTAGTC
15349539 ATCAGATCCT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
48 47 0.54
51 40 0.46
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.32
Consensus pattern (48 bp):
ACCTTTAATCCGTAAAGGATTCATTTACTCACGATGACACCTAGTCGA
Found at i:15350818 original size:18 final size:16
Alignment explanation
Indices: 15350788--15350826 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
15350778 TCACGTCAGC
*
15350788 AAAAATAATTTAAATTT
1 AAAAATAAATTAAA-TT
15350805 AAAATATAAATTAAATT
1 AAAA-ATAAATTAAATT
15350822 AAAAA
1 AAAAA
15350827 AATATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 10 0.50
18 9 0.45
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAAATAAATTAAATT
Found at i:15353014 original size:18 final size:18
Alignment explanation
Indices: 15352991--15353071 Score: 69
Period size: 18 Copynumber: 4.5 Consensus size: 18
15352981 CAGTAAGGGC
15352991 GGTGAGGGTTTGAGAGGT
1 GGTGAGGGTTTGAGAGGT
*
15353009 GGTGAGGGTTCGAGTAAGGGT
1 GGTGAGGGTTTGAG--A-GGT
15353030 GGTGAGGG--TGA-AGGT
1 GGTGAGGGTTTGAGAGGT
* ** *
15353045 GTTGAGGGTGAGGGAGGT
1 GGTGAGGGTTTGAGAGGT
15353063 GGTGAGGGT
1 GGTGAGGGT
15353072 AAGGATGTTG
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
15 10 0.20
16 1 0.02
17 1 0.02
18 25 0.49
19 2 0.04
20 1 0.02
21 11 0.22
ACGTcount: A:0.17, C:0.01, G:0.58, T:0.23
Consensus pattern (18 bp):
GGTGAGGGTTTGAGAGGT
Found at i:15353027 original size:39 final size:36
Alignment explanation
Indices: 15352982--15353053 Score: 99
Period size: 39 Copynumber: 1.9 Consensus size: 36
15352972 AGATGATGAC
15352982 AGTAAGGGCGGTGAGGGTTTGAGAGGTGGTGAGGGTTCG
1 AGTAAGGGCGGTGAGGG--TGA-AGGTGGTGAGGGTTCG
* *
15353021 AGTAAGGGTGGTGAGGGTGAAGGTGTTGAGGGT
1 AGTAAGGGCGGTGAGGGTGAAGGTGGTGAGGGT
15353054 GAGGGAGGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 12 0.39
37 3 0.10
39 16 0.52
ACGTcount: A:0.19, C:0.03, G:0.54, T:0.24
Consensus pattern (36 bp):
AGTAAGGGCGGTGAGGGTGAAGGTGGTGAGGGTTCG
Found at i:15353032 original size:21 final size:21
Alignment explanation
Indices: 15352982--15353038 Score: 75
Period size: 18 Copynumber: 2.9 Consensus size: 21
15352972 AGATGATGAC
* *
15352982 AGTAAGGGCGGTGAGGGTTTG
1 AGTAAGGGTGGTGAGGGTTCG
15353003 AG--A-GGTGGTGAGGGTTCG
1 AGTAAGGGTGGTGAGGGTTCG
15353021 AGTAAGGGTGGTGAGGGT
1 AGTAAGGGTGGTGAGGGT
15353039 GAAGGTGTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
18 15 0.48
19 1 0.03
20 1 0.03
21 14 0.45
ACGTcount: A:0.19, C:0.04, G:0.54, T:0.23
Consensus pattern (21 bp):
AGTAAGGGTGGTGAGGGTTCG
Found at i:15353069 original size:33 final size:34
Alignment explanation
Indices: 15353027--15353106 Score: 103
Period size: 33 Copynumber: 2.4 Consensus size: 34
15353017 TTCGAGTAAG
15353027 GGTGGTGAGGGTGAAGG-TGTTGAGGGTG-AGGGA
1 GGTGGTGAGGGTGAAGGATGTTGAGGGTGTA-GGA
*
15353060 GGTGGTGAGGGT-AAGGATGTTGATGGTGTAGGA
1 GGTGGTGAGGGTGAAGGATGTTGAGGGTGTAGGA
* *
15353093 GGTGTTGAAGGTGA
1 GGTGGTGAGGGTGA
15353107 GGGTTTGGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
32 4 0.10
33 35 0.85
34 2 0.05
ACGTcount: A:0.20, C:0.00, G:0.55, T:0.25
Consensus pattern (34 bp):
GGTGGTGAGGGTGAAGGATGTTGAGGGTGTAGGA
Found at i:15355186 original size:32 final size:34
Alignment explanation
Indices: 15355119--15355198 Score: 119
Period size: 32 Copynumber: 2.4 Consensus size: 34
15355109 TAGTGTTTTG
*
15355119 TTTTAATTTAAAATTGACAGCAGACGTACTTATGTT
1 TTTTAATTTAAAATTG--AGCAGACATACTTATGTT
15355155 TTTTAATTTAAAATTG-GCAG-CATACTTATGTT
1 TTTTAATTTAAAATTGAGCAGACATACTTATGTT
15355187 TTTTAATTTAAA
1 TTTTAATTTAAA
15355199 TTGCAAGGTC
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
32 23 0.53
33 4 0.09
36 16 0.37
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (34 bp):
TTTTAATTTAAAATTGAGCAGACATACTTATGTT
Found at i:15356392 original size:160 final size:161
Alignment explanation
Indices: 15356142--15356531 Score: 620
Period size: 160 Copynumber: 2.4 Consensus size: 161
15356132 ACAACGGAAA
* * *
15356142 CACAGGCATATGGTAAACACTTTCTCATTGTCAATTCCAAATTATAATAATCTAATTTCGATTTT
1 CACAGGTATATGGTAAACACTTTCTCATTGTCAATTCCAAATTATAAAAATCTAATTTCGGTTTT
* * *
15356207 GATTTTTTATGTCTTATTCTGGTACGAGTACGAGAAGTACAACCCAAAAAAAGAATGACAGAACA
66 GATTTTTTATGTCTTAGTCTGGTACGAGTACAAGAAGTACAACCCAAAAAAAGAACGACAGAACA
15356272 CCACCATGCATTCAGGCTAACACAACTAGAT
131 CCACCATGCATTCAGGCTAACACAACTAGAT
15356303 CACAGGTATATGGTAAACACTTTCTCA-TGTCAATTCCAAATTATAAAAATCTAATTTCGGTTTT
1 CACAGGTATATGGTAAACACTTTCTCATTGTCAATTCCAAATTATAAAAATCTAATTTCGGTTTT
* * *
15356367 GATTTTTTATGTTTTAGTCTGGTACGAGTACAAGAAGTACAACCCGAACAAAGAACGACAGAACA
66 GATTTTTTATGTCTTAGTCTGGTACGAGTACAAGAAGTACAACCCAAAAAAAGAACGACAGAACA
*
15356432 CCACCATGCATTCAGGCTAACACAACTGGAT
131 CCACCATGCATTCAGGCTAACACAACTAGAT
* * ** * * *
15356463 CACAGGTATATTGTAAACACTTTCTCATTGTCAATTCTAAATTATTTAAATTTAATTTGGGTTCT
1 CACAGGTATATGGTAAACACTTTCTCATTGTCAATTCCAAATTATAAAAATCTAATTTCGGTTTT
15356528 GATT
66 GATT
15356532 ATTGTTCTCA
Statistics
Matches: 211, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
160 150 0.71
161 61 0.29
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (161 bp):
CACAGGTATATGGTAAACACTTTCTCATTGTCAATTCCAAATTATAAAAATCTAATTTCGGTTTT
GATTTTTTATGTCTTAGTCTGGTACGAGTACAAGAAGTACAACCCAAAAAAAGAACGACAGAACA
CCACCATGCATTCAGGCTAACACAACTAGAT
Found at i:15359520 original size:17 final size:18
Alignment explanation
Indices: 15359495--15359528 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15359485 TAAAATTATA
*
15359495 TTATTTTTTAA-TTTAAT
1 TTATATTTTAAGTTTAAT
15359512 TTATATTTTAAGTTTAA
1 TTATATTTTAAGTTTAA
15359529 ATTTTTTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (18 bp):
TTATATTTTAAGTTTAAT
Found at i:15364851 original size:5 final size:5
Alignment explanation
Indices: 15364815--15364849 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
15364805 ATCCCCTGCT
* *
15364815 CATTC CATTC CATTC CATTC CATTC AATTC AATTC
1 CATTC CATTC CATTC CATTC CATTC CATTC CATTC
15364850 AAAGGAAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.40
Consensus pattern (5 bp):
CATTC
Found at i:15367496 original size:22 final size:22
Alignment explanation
Indices: 15367458--15367518 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
15367448 TCTAGAACGC
* *
15367458 AATTGAATC-ATCTCAAATTCAA
1 AATTAAATCAATC-CAAATTAAA
*
15367480 ACTTAAATCAATCCAAATTAAA
1 AATTAAATCAATCCAAATTAAA
*
15367502 AATTAAA-CAACCCAAAT
1 AATTAAATCAATCCAAAT
15367519 CTAATCCTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 9 0.27
22 21 0.64
23 3 0.09
ACGTcount: A:0.52, C:0.20, G:0.02, T:0.26
Consensus pattern (22 bp):
AATTAAATCAATCCAAATTAAA
Found at i:15369706 original size:25 final size:25
Alignment explanation
Indices: 15369678--15369731 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
15369668 TATGTTATAA
* *
15369678 AAATATTATATTA-ATTATATATGTT
1 AAATAATA-ATTATATTATATATATT
*
15369703 AAATAATAATTATATTATTTATATT
1 AAATAATAATTATATTATATATATT
15369728 AAAT
1 AAAT
15369732 CACTAATCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 4 0.16
25 21 0.84
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
AAATAATAATTATATTATATATATT
Found at i:15369714 original size:29 final size:29
Alignment explanation
Indices: 15369663--15369726 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
15369653 CCGACCTGAA
15369663 TATATTATGTTATAAAAATATTATATTAAT
1 TATA-TATGTTATAAAAATATTATATTAAT
* *
15369693 TATATATGTTA-AATAATAATTATATTATT
1 TATATATGTTATAAAAAT-ATTATATTAAT
15369722 TATAT
1 TATAT
15369727 TAAATCACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 5 0.16
29 22 0.71
30 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (29 bp):
TATATATGTTATAAAAATATTATATTAAT
Found at i:15383035 original size:3 final size:3
Alignment explanation
Indices: 15383027--15383051 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15383017 AAAGGTAATT
15383027 GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA G
15383052 TGAATAAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:15383791 original size:17 final size:19
Alignment explanation
Indices: 15383752--15383791 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
15383742 TTTTATATTT
*
15383752 TTTTTCATTATTTAATAAG
1 TTTTTCAGTATTTAATAAG
15383771 -TTTTCAGT-TTTAA-AAG
1 TTTTTCAGTATTTAATAAG
15383787 TTTTT
1 TTTTT
15383792 GTCTACTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
16 3 0.16
17 9 0.47
18 7 0.37
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (19 bp):
TTTTTCAGTATTTAATAAG
Found at i:15384911 original size:21 final size:21
Alignment explanation
Indices: 15384885--15384933 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
15384875 TATATACTAT
*
15384885 ATAAAAATTTTAAAAAAGTAA
1 ATAAAAATATTAAAAAAGTAA
* *
15384906 AT-AAAATATTCAAAAATTAA
1 ATAAAAATATTAAAAAAGTAA
15384926 A-AAAAATA
1 ATAAAAATA
15384934 GAAAAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (21 bp):
ATAAAAATATTAAAAAAGTAA
Found at i:15392678 original size:2 final size:2
Alignment explanation
Indices: 15392671--15392697 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15392661 AAAAGGTAAT
15392671 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
15392698 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:15394623 original size:7 final size:7
Alignment explanation
Indices: 15394611--15394643 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
15394601 GAAAAGGACC
15394611 AGCAACA
1 AGCAACA
15394618 AGCAACA
1 AGCAACA
15394625 AGCAACA
1 AGCAACA
15394632 AGCAACA
1 AGCAACA
15394639 AGCAA
1 AGCAA
15394644 TTTGATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.27, G:0.15, T:0.00
Consensus pattern (7 bp):
AGCAACA
Found at i:15396729 original size:17 final size:18
Alignment explanation
Indices: 15396697--15396742 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
15396687 AAGAGTTGTG
15396697 ATAATTATATATTTAA-AA
1 ATAATTATA-ATTTAATAA
15396715 ATAATTATAATTTAATAA
1 ATAATTATAATTTAATAA
*
15396733 A-AATTGTAAT
1 ATAATTATAAT
15396743 AATTATTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
ATAATTATAATTTAATAA
Found at i:15412122 original size:29 final size:29
Alignment explanation
Indices: 15412090--15412145 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
15412080 TAATTGGATC
*
15412090 AAATCAAAATTTATGTATAAAATTACATA
1 AAATCAAAATTCATGTATAAAATTACATA
* * *
15412119 AAATCAAAGTTCATGTGTACAATTACA
1 AAATCAAAATTCATGTATAAAATTACA
15412146 CATTAAACCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.32
Consensus pattern (29 bp):
AAATCAAAATTCATGTATAAAATTACATA
Found at i:15421518 original size:16 final size:16
Alignment explanation
Indices: 15421472--15421519 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
15421462 CAAGTGATTT
15421472 GACAAAAAAATTATAAA
1 GACAAAAAAATTA-AAA
** **
15421489 TTCAAAAATTTTAAAA
1 GACAAAAAAATTAAAA
15421505 GACAAAAAAATTAAA
1 GACAAAAAAATTAAA
15421520 TAAAAAACTA
Statistics
Matches: 23, Mismatches: 8, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.23
Consensus pattern (16 bp):
GACAAAAAAATTAAAA
Found at i:15421660 original size:18 final size:21
Alignment explanation
Indices: 15421629--15421671 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
15421619 TAGTTTGAAC
15421629 TTTTTTACTATTTTCT-AAAT
1 TTTTTTACTATTTTCTAAAAT
*
15421649 TTTTTTA-T-TTTTTTAAAAT
1 TTTTTTACTATTTTCTAAAAT
15421668 TTTT
1 TTTT
15421672 CAAAGTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 5 0.24
19 9 0.43
20 7 0.33
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTTTACTATTTTCTAAAAT
Found at i:15424928 original size:6 final size:6
Alignment explanation
Indices: 15424917--15424950 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
15424907 CAGATGAAAC
15424917 TGGGTA TGGGTA TGGGTA TGGGTA TGGGTA TGGG
1 TGGGTA TGGGTA TGGGTA TGGGTA TGGGTA TGGG
15424951 GGGGTAAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.00, G:0.53, T:0.32
Consensus pattern (6 bp):
TGGGTA
Found at i:15425503 original size:11 final size:11
Alignment explanation
Indices: 15425457--15425490 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
15425447 CTAAAAGTAC
15425457 AAAAAAA-TAT
1 AAAAAAATTAT
*
15425467 TAAAAAATTAT
1 AAAAAAATTAT
15425478 AAAAAAATTAT
1 AAAAAAATTAT
15425489 AA
1 AA
15425491 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 6 0.29
11 15 0.71
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAAAAATTAT
Found at i:15443788 original size:52 final size:51
Alignment explanation
Indices: 15443714--15444010 Score: 378
Period size: 52 Copynumber: 5.7 Consensus size: 51
15443704 ATAAACGAAG
* * *
15443714 AGGTCCGATGACTAAGTATCATCGTGAGTATATGAATCCTCTACGGATTAA
1 AGGTCCGATGACTAAGTGTCATCGTGAGTATACGAATCCTTTACGGATTAA
*
15443765 ACGGTCTGATGACTAAGTGTCATCGTGAGTATACGAATCCTTTACGGATTAA
1 A-GGTCCGATGACTAAGTGTCATCGTGAGTATACGAATCCTTTACGGATTAA
* *
15443817 ACGGTCCGATAACTAAGTGTCATTGTGAGTATACGAATCCTTTACGGATTAA
1 A-GGTCCGATGACTAAGTGTCATCGTGAGTATACGAATCCTTTACGGATTAA
* * * *
15443869 AGGGTCCGATGACTAAGTGTCATCGTGAGTATATGGATCATTTATGGATTAA
1 A-GGTCCGATGACTAAGTGTCATCGTGAGTATACGAATCCTTTACGGATTAA
* ** *
15443921 GAGGTTCGATGACTCTGTGTCATCGTGAGTATACGAATCCTTTACGAATTATA
1 -AGGTCCGATGACTAAGTGTCATCGTGAGTATACGAATCCTTTACGGATTA-A
* * * * *
15443974 AGGTCCGATGGCTATGGGTCACCGTGAGTATATGAAT
1 AGGTCCGATGACTAAGTGTCATCGTGAGTATACGAAT
15444011 GAAGTGAAAT
Statistics
Matches: 215, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
51 1 0.00
52 212 0.99
53 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (51 bp):
AGGTCCGATGACTAAGTGTCATCGTGAGTATACGAATCCTTTACGGATTAA
Found at i:15446754 original size:18 final size:18
Alignment explanation
Indices: 15446727--15446768 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
15446717 CATTATTTCC
* *
15446727 AAGTACTTTTGGGACAAA
1 AAGTATTTTTGAGACAAA
*
15446745 AAGTATTTTTGAGATAAA
1 AAGTATTTTTGAGACAAA
15446763 AA-TATT
1 AAGTATT
15446769 GTTAAACAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.43, C:0.05, G:0.17, T:0.36
Consensus pattern (18 bp):
AAGTATTTTTGAGACAAA
Found at i:15452317 original size:28 final size:28
Alignment explanation
Indices: 15452285--15452342 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
15452275 GTAATTTCAA
*
15452285 ATTAAGTTT-TAATTAGACATTAATTATT
1 ATTAAGTTTAT-ATAAGACATTAATTATT
*
15452313 ATTAAGTTTATATAAGATATTAATTATT
1 ATTAAGTTTATATAAGACATTAATTATT
15452341 AT
1 AT
15452343 AACATATCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 26 0.96
29 1 0.04
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (28 bp):
ATTAAGTTTATATAAGACATTAATTATT
Found at i:15452637 original size:27 final size:26
Alignment explanation
Indices: 15452599--15452652 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
15452589 GAAAGAAAAG
*
15452599 GAAAAAGAGAAGAAACAAGATTTTAA
1 GAAAAAGAGAAGAAACAAGATTATAA
*
15452625 GAAAAATGAGAAGAGACAAGATTATAA
1 GAAAAA-GAGAAGAAACAAGATTATAA
15452652 G
1 G
15452653 TGCATAGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.59, C:0.04, G:0.22, T:0.15
Consensus pattern (26 bp):
GAAAAAGAGAAGAAACAAGATTATAA
Found at i:15468872 original size:14 final size:13
Alignment explanation
Indices: 15468847--15468871 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15468837 TTTTGGTCAA
15468847 AAAGTATTTTTTC
1 AAAGTATTTTTTC
15468860 AAAGTATTTTTT
1 AAAGTATTTTTT
15468872 TTATGCTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (13 bp):
AAAGTATTTTTTC
Found at i:15469389 original size:29 final size:28
Alignment explanation
Indices: 15469353--15469407 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
15469343 AATTTTGAAT
15469353 TAAAAATA-AAGAAACTAAATTATTAAAAA
1 TAAAAATACAA-AAACTAAATT-TTAAAAA
*
15469382 TAAAAATACAAATACTAAATTTTAAA
1 TAAAAATACAAAAACTAAATTTTAAA
15469408 TTTACAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 5 0.21
29 17 0.71
30 2 0.08
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.27
Consensus pattern (28 bp):
TAAAAATACAAAAACTAAATTTTAAAAA
Found at i:15469643 original size:8 final size:7
Alignment explanation
Indices: 15469613--15469643 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
15469603 TGATTTTTTA
15469613 TTTTAAT
1 TTTTAAT
15469620 TTTTAAT
1 TTTTAAT
15469627 TTTTAAT
1 TTTTAAT
15469634 TTTTAGAT
1 TTTTA-AT
15469642 TT
1 TT
15469644 ATTTTAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 19 0.83
8 4 0.17
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (7 bp):
TTTTAAT
Found at i:15469644 original size:13 final size:13
Alignment explanation
Indices: 15469605--15469643 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
15469595 TCAGTTATTG
*
15469605 ATTTTTTATTTTA
1 ATTTTTAATTTTA
15469618 ATTTTTAATTTTTA
1 ATTTTTAA-TTTTA
15469632 ATTTTTAGATTT
1 ATTTTTA-ATTT
15469644 ATTTTAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 7 0.30
14 15 0.65
15 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (13 bp):
ATTTTTAATTTTA
Found at i:15473037 original size:15 final size:15
Alignment explanation
Indices: 15473017--15473047 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15473007 AAAATATCGC
*
15473017 TAAAAATAACGCCGT
1 TAAAAATAACGACGT
15473032 TAAAAATAACGACGT
1 TAAAAATAACGACGT
15473047 T
1 T
15473048 TATGAGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.13, T:0.23
Consensus pattern (15 bp):
TAAAAATAACGACGT
Found at i:15473127 original size:43 final size:43
Alignment explanation
Indices: 15473057--15473194 Score: 177
Period size: 43 Copynumber: 3.2 Consensus size: 43
15473047 TTATGAGGAA
* *
15473057 AAACGCCGTTAAAGAACATGGTTTTTAGCGGCGCTTCTACCGC
1 AAACGCCGTTAAAGAACATGGTCTTTAGCGGCGCTTCTACCAC
* * * * * *
15473100 AAACACCGTTAAAGAATATGATCTTTAGCGCCACTTCTACCAT
1 AAACGCCGTTAAAGAACATGGTCTTTAGCGGCGCTTCTACCAC
* *
15473143 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTACCCAC
1 AAACGCCGTTAAAGAACATGGTCTTTAGCGGCGCTTCTA-CCAC
15473187 AAACGCCG
1 AAACGCCG
15473195 CTATAGATAA
Statistics
Matches: 78, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
43 67 0.86
44 11 0.14
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (43 bp):
AAACGCCGTTAAAGAACATGGTCTTTAGCGGCGCTTCTACCAC
Found at i:15473212 original size:44 final size:42
Alignment explanation
Indices: 15473057--15473235 Score: 137
Period size: 43 Copynumber: 4.1 Consensus size: 42
15473047 TTATGAGGAA
* * * * *
15473057 AAACGCCGTTAAAGAACATGGTTTTTAGCGGCGCTTCTACCGC
1 AAACGCCGCTAAAGAACATAGTCTTTAGCGGC-CTTTTACCAC
* * * * * *
15473100 AAACACCGTTAAAGAATAT-GATCTTTAGCGCCACTTCTACCAT
1 AAACGCCGCTAAAGAACATAG-TCTTTAGCGGC-CTTTTACCAC
*
15473143 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTACCCAC
1 AAACGCCGCTAAAGAACATAGTCTTTAGCGGC-CTTTTA-CCAC
* * * *
15473187 AAACGCCGCTATAGATA-ATATTCTTTAGCGGCATTTTTTCCAC
1 AAACGCCGCTAAAGA-ACATAGTCTTTAGCGGC-CTTTTACCAC
15473230 AAACGC
1 AAACGC
15473236 ATTTTTTTAA
Statistics
Matches: 112, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
42 1 0.01
43 75 0.67
44 35 0.31
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATAGTCTTTAGCGGCCTTTTACCAC
Found at i:15473329 original size:15 final size:15
Alignment explanation
Indices: 15473309--15473341 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
15473299 TTTTCCTGTA
*
15473309 AATTCAAATCCAATC
1 AATTCAAATCCAACC
15473324 AATTCAAATCCAACC
1 AATTCAAATCCAACC
15473339 AAT
1 AAT
15473342 AACTTCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.24
Consensus pattern (15 bp):
AATTCAAATCCAACC
Found at i:15473612 original size:21 final size:21
Alignment explanation
Indices: 15473586--15473625 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
15473576 CAACTCTTGC
*
15473586 TGCTGCCTCCGCTTCCCTCGT
1 TGCTGCCTCCACTTCCCTCGT
15473607 TGCTGCCTCCACTTCCCTC
1 TGCTGCCTCCACTTCCCTC
15473626 TCTACTGCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.03, C:0.50, G:0.15, T:0.33
Consensus pattern (21 bp):
TGCTGCCTCCACTTCCCTCGT
Found at i:15473633 original size:21 final size:21
Alignment explanation
Indices: 15473588--15473637 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
15473578 ACTCTTGCTG
* *
15473588 CTGCCTCCGCTTCCCTCGTTG
1 CTGCCTCCACTTCCCTCGTTA
15473609 CTGCCTCCACTTCCCTC-TCTA
1 CTGCCTCCACTTCCCTCGT-TA
15473630 CTGCCTCC
1 CTGCCTCC
15473638 TCTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 25 0.96
ACGTcount: A:0.04, C:0.52, G:0.12, T:0.32
Consensus pattern (21 bp):
CTGCCTCCACTTCCCTCGTTA
Found at i:15482768 original size:31 final size:31
Alignment explanation
Indices: 15482735--15482799 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
15482725 ATTTAAATTT
*
15482735 AAAAATATATATTAGTGACAACATTTTACTTA
1 AAAAATAAAT-TTAGTGACAACATTTTACTTA
*
15482767 AAAAATAAATTTAGTGACAACATTTTATTTA
1 AAAAATAAATTTAGTGACAACATTTTACTTA
15482798 AA
1 AA
15482800 TATTTGGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 22 0.71
32 9 0.29
ACGTcount: A:0.49, C:0.08, G:0.06, T:0.37
Consensus pattern (31 bp):
AAAAATAAATTTAGTGACAACATTTTACTTA
Found at i:15482916 original size:32 final size:31
Alignment explanation
Indices: 15482875--15483051 Score: 152
Period size: 32 Copynumber: 5.7 Consensus size: 31
15482865 TATAATTAAA
15482875 TATAATTAAATATTTAATTAACTAATATTGTT
1 TATAATTAAATATTTAATTAACTAATATT-TT
* *
15482907 TATAATTAAATATTTAATT-A--AATAATTA
1 TATAATTAAATATTTAATTAACTAATATTTT
* * *
15482935 AATAATTAAATATAATTATTTAATTAA-ATATTT
1 TATAATTAAATAT--TTAATTAACTAATAT-TTT
* *
15482968 TA-AATTAAATATAATTAAATAATTAA-ATCTTT
1 TATAATTAAATAT--TTAATTAACTAATAT-TTT
* *
15483000 TA-AGTTAAATATTTAATTAACTAATACTGTT
1 TATAATTAAATATTTAATTAACTAATA-TTTT
15483031 TATAATTAAATATTTAATTAA
1 TATAATTAAATATTTAATTAA
15483052 ACATAATTAA
Statistics
Matches: 121, Mismatches: 15, Indels: 18
0.79 0.10 0.12
Matches are distributed among these distances:
28 13 0.11
29 5 0.04
30 15 0.12
31 7 0.06
32 76 0.63
33 5 0.04
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (31 bp):
TATAATTAAATATTTAATTAACTAATATTTT
Found at i:15482932 original size:8 final size:8
Alignment explanation
Indices: 15482921--15482995 Score: 64
Period size: 8 Copynumber: 9.1 Consensus size: 8
15482911 ATTAAATATT
15482921 TAATTAAA
1 TAATTAAA
15482929 TAATTAAA
1 TAATTAAA
15482937 TAATTAAATA
1 TAATT-AA-A
**
15482947 TAATTATT
1 TAATTAAA
15482955 TAATTAAA
1 TAATTAAA
*
15482963 TATTTTAAA
1 TA-ATTAAA
*
15482972 TTAA--ATA
1 -TAATTAAA
15482979 TAATTAAA
1 TAATTAAA
15482987 TAATTAAA
1 TAATTAAA
15482995 T
1 T
15482996 CTTTTAAGTT
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
6 3 0.06
7 2 0.04
8 32 0.60
9 8 0.15
10 8 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
TAATTAAA
Found at i:15483067 original size:32 final size:31
Alignment explanation
Indices: 15482868--15483070 Score: 114
Period size: 32 Copynumber: 6.5 Consensus size: 31
15482858 TGTTTTTTAT
*
15482868 AATTAAATATAATTAAATATTTAATTAACTA
1 AATTAAATATAATTAAATATTTAATTAAATA
***
15482899 ATATTGTTTATAATTAAATATTTAATTAAAT-
1 A-ATTAAATATAATTAAATATTTAATTAAATA
*
15482930 AATTAAATAATTAAATATAATTATTTAATTAAATA
1 AATTAAAT-A-T-AAT-TAAATATTTAATTAAATA
** * * * *
15482965 TTTTAAAT-TAA--ATATAATTAAATAATTA
1 AATTAAATATAATTAAATATTTAATTAAATA
* *
15482993 AATCT---TTTAAGTTAAATATTTAATTAACTA
1 AAT-TAAATATAA-TTAAATATTTAATTAAATA
* *** *
15483023 ATACTGTTTATAATTAAATATTTAATTAAACA
1 A-ATTAAATATAATTAAATATTTAATTAAATA
15483055 TAATTAAATATAATTA
1 -AATTAAATATAATTA
15483071 TTTAATTAAA
Statistics
Matches: 127, Mismatches: 29, Indels: 31
0.68 0.16 0.17
Matches are distributed among these distances:
26 1 0.01
27 3 0.02
28 13 0.10
29 1 0.01
30 19 0.15
31 6 0.05
32 54 0.43
33 8 0.06
34 16 0.13
35 6 0.05
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.45
Consensus pattern (31 bp):
AATTAAATATAATTAAATATTTAATTAAATA
Found at i:15483093 original size:18 final size:18
Alignment explanation
Indices: 15482920--15482995 Score: 67
Period size: 18 Copynumber: 4.6 Consensus size: 18
15482910 AATTAAATAT
15482920 TTAATTAAATA-ATTAAA
1 TTAATTAAATATATTAAA
*
15482937 -TAATTAAATATAATT-AT
1 TTAATTAAATAT-ATTAAA
*
15482954 TTAATTAAATATTTTAAA
1 TTAATTAAATATATTAAA
*
15482972 TTAA--ATATA-ATTAAA
1 TTAATTAAATATATTAAA
15482987 -TAATTAAAT
1 TTAATTAAAT
15482996 CTTTTAAGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
14 3 0.06
15 5 0.11
16 17 0.36
17 3 0.06
18 19 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TTAATTAAATATATTAAA
Found at i:15483434 original size:21 final size:21
Alignment explanation
Indices: 15483408--15483450 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
15483398 CACTTGCCTT
15483408 GTGAAGAGAA-AGGCCATGGAA
1 GTGAAGAGAAGA-GCCATGGAA
15483429 GTGAAGAGAAGAGCCATGGAA
1 GTGAAGAGAAGAGCCATGGAA
15483450 G
1 G
15483451 AGAATGTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.42, C:0.09, G:0.40, T:0.09
Consensus pattern (21 bp):
GTGAAGAGAAGAGCCATGGAA
Found at i:15493343 original size:41 final size:41
Alignment explanation
Indices: 15493298--15493490 Score: 242
Period size: 41 Copynumber: 4.7 Consensus size: 41
15493288 TTTAAATAAA
* *
15493298 TTAGCGGCGCTTATGGGAAAGCGCCGCTGATGCCCTGACCT
1 TTAGCGGCGCTTATGGGAAAGCGCCGCTAATGACCTGACCT
* * ** *
15493339 TTAGCGGGGCTTTTAAGAAAGCGCCGCTAATGACCTGGCCT
1 TTAGCGGCGCTTATGGGAAAGCGCCGCTAATGACCTGACCT
* * * * *
15493380 TTAGCGGCACTTATGGGGAAGCACTGCTAATGACCTAACCT
1 TTAGCGGCGCTTATGGGAAAGCGCCGCTAATGACCTGACCT
* * * *
15493421 TTAGCGGTGCTTATAGGAAAGCGTCGCTAATGACTTGACCT
1 TTAGCGGCGCTTATGGGAAAGCGCCGCTAATGACCTGACCT
15493462 TTAGCGGCGCTTATGGGAAAGCGCCGCTA
1 TTAGCGGCGCTTATGGGAAAGCGCCGCTA
15493491 TTGCTTTACC
Statistics
Matches: 123, Mismatches: 29, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 123 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (41 bp):
TTAGCGGCGCTTATGGGAAAGCGCCGCTAATGACCTGACCT
Found at i:15494318 original size:17 final size:18
Alignment explanation
Indices: 15494277--15494353 Score: 61
Period size: 17 Copynumber: 4.4 Consensus size: 18
15494267 CCCAATGAGA
15494277 TAAATTTAGTTTTAAAAT
1 TAAATTTAGTTTTAAAAT
* * *
15494295 TAGATTTA-TTTTGAATT
1 TAAATTTAGTTTTAAAAT
** *
15494312 TAAATTT-GCATAAAAAT
1 TAAATTTAGTTTTAAAAT
* *
15494329 TAAATTTA-TTATAAATT
1 TAAATTTAGTTTTAAAAT
15494346 TAAATTTA
1 TAAATTTA
15494354 AAATTAAATT
Statistics
Matches: 43, Mismatches: 14, Indels: 5
0.69 0.23 0.08
Matches are distributed among these distances:
17 36 0.84
18 7 0.16
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (18 bp):
TAAATTTAGTTTTAAAAT
Found at i:15494363 original size:34 final size:33
Alignment explanation
Indices: 15494290--15494367 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 33
15494280 ATTTAGTTTT
* * * *
15494290 AAAATTAGATTTATTTTGAATTTAAATTTGCATA
1 AAAATTAAATTTATTATAAATTTAAATTT-CAAA
15494324 AAAATTAAATTTATTATAAATTTAAATTT-AAA
1 AAAATTAAATTTATTATAAATTTAAATTTCAAA
15494356 ATTAAATTAAAT
1 A--AAATTAAAT
15494368 GTCCAAAGTC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
32 3 0.08
34 35 0.92
ACGTcount: A:0.50, C:0.01, G:0.04, T:0.45
Consensus pattern (33 bp):
AAAATTAAATTTATTATAAATTTAAATTTCAAA
Found at i:15494365 original size:17 final size:16
Alignment explanation
Indices: 15494325--15494367 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
15494315 ATTTGCATAA
**
15494325 AAATTAAATTTATTAT
1 AAATTAAATTTAAAAT
15494341 AAATTTAAATTTAAAATT
1 AAA-TTAAATTTAAAA-T
15494359 AAATTAAAT
1 AAATTAAAT
15494368 GTCCAAAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 3 0.13
17 16 0.70
18 4 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATTAAATTTAAAAT
Found at i:15495699 original size:59 final size:59
Alignment explanation
Indices: 15495623--15495830 Score: 272
Period size: 59 Copynumber: 3.5 Consensus size: 59
15495613 ATATTTTTGA
* *
15495623 CCCCAAACTTTCTAAAATTCCATTTTTAACCCCAATTTCACCAAAAATTACCATTTTAC
1 CCCCAAACATTCTAAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTAC
* * * * * * *
15495682 CCCTAAACATTCCAAAATTCTATTTTAAACTCCGATTGCACCTAAAATTACCATTTTAC
1 CCCCAAACATTCTAAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTAC
* * * * *
15495741 CCCCGAACATTCTAAAATTCTATTTTTAATCACGATTTTACCAAAAATTACCATTTTAC
1 CCCCAAACATTCTAAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTAC
* *
15495800 CCCCAGACCTTCTAAAATTCCATTTTTAACC
1 CCCCAAACATTCTAAAATTCCATTTTTAACC
15495831 TCAAATTTTC
Statistics
Matches: 125, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
59 125 1.00
ACGTcount: A:0.35, C:0.28, G:0.02, T:0.35
Consensus pattern (59 bp):
CCCCAAACATTCTAAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTAC
Found at i:15495757 original size:29 final size:29
Alignment explanation
Indices: 15495666--15495759 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 29
15495656 AATTTCACCA
** *
15495666 AAAATTACCATTTTACCCCTAAACATTCC
1 AAAATTACCATTTTACCCCCGAACATTCT
* * * * *
15495695 AAAATT-CTATTTTAAACTCCGATTGCA-CCT
1 AAAATTACCATTTT-ACCCCCGA--ACATTCT
15495725 AAAATTACCATTTTACCCCCGAACATTCT
1 AAAATTACCATTTTACCCCCGAACATTCT
15495754 AAAATT
1 AAAATT
15495760 CTATTTTTAA
Statistics
Matches: 47, Mismatches: 13, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
28 8 0.17
29 18 0.38
30 13 0.28
31 8 0.17
ACGTcount: A:0.37, C:0.27, G:0.03, T:0.33
Consensus pattern (29 bp):
AAAATTACCATTTTACCCCCGAACATTCT
Found at i:15508267 original size:200 final size:200
Alignment explanation
Indices: 15507919--15508366 Score: 648
Period size: 200 Copynumber: 2.2 Consensus size: 200
15507909 ACAAAACATT
* * * * *
15507919 GAGGCGGTCATCTTCCTGATGGGATACAGAGAAGAATACCAACTCAGCGCTCAACATCAGCCAAT
1 GAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAGCTCAACGCTCAACAGCAGCAAAT
* * *
15507984 CTTCGAACCCAACTTCCTGATGAGACACTAAGAAGCAGGTCGAAGCAATATAATGGTTAGCTTCC
66 CTTCGAACCCAACATCCTGATGAGACACTAAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTCC
* * * *
15508049 TGATGAGATACAGAGAAGTGGACCAGATTCGTCTTCTTGAGGGGATCCAGAGAAGCGAATCAAAA
131 TGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATCAAAA
15508114 CA-AGC
196 CAGA-C
* **
15508119 GAGGTGGTCATCTTTTTGATGAGATACAGAGAAGAATACCAGCTCAACGCTCAAC-GCGAGCAAA
1 GAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAGCTCAACGCTCAACAGC-AGCAAA
* *
15508183 TCTTCGAACCCAGCATCCTGATGAGATACTAAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTC
65 TCTTCGAACCCAACATCCTGATGAGACACTAAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTC
* *
15508248 CTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGTGAATTAAA
130 CTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATCAAA
*
15508313 ACAGAT
195 ACAGAC
* * *
15508319 GATCGCGGTCATCTTCCTGATGAGATACAGAGAAGAAGACCAGGTCAA
1 GA-GGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAGCTCAA
15508367 TGAAATCAGA
Statistics
Matches: 219, Mismatches: 26, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
199 1 0.00
200 178 0.81
201 40 0.18
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (200 bp):
GAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAGCTCAACGCTCAACAGCAGCAAAT
CTTCGAACCCAACATCCTGATGAGACACTAAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTCC
TGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATCAAAA
CAGAC
Found at i:15508734 original size:17 final size:18
Alignment explanation
Indices: 15508693--15508769 Score: 61
Period size: 17 Copynumber: 4.4 Consensus size: 18
15508683 CCCAATGAGA
15508693 TAAATTTAGTTTTAAAAT
1 TAAATTTAGTTTTAAAAT
* * *
15508711 TAGATTTA-TTTTGAATT
1 TAAATTTAGTTTTAAAAT
** *
15508728 TAAATTT-GCATAAAAAT
1 TAAATTTAGTTTTAAAAT
* *
15508745 TAAATTTA-TTATAAATT
1 TAAATTTAGTTTTAAAAT
15508762 TAAATTTA
1 TAAATTTA
15508770 AAATTAAATT
Statistics
Matches: 43, Mismatches: 14, Indels: 5
0.69 0.23 0.08
Matches are distributed among these distances:
17 36 0.84
18 7 0.16
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (18 bp):
TAAATTTAGTTTTAAAAT
Found at i:15508779 original size:34 final size:33
Alignment explanation
Indices: 15508706--15508783 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 33
15508696 ATTTAGTTTT
* * * *
15508706 AAAATTAGATTTATTTTGAATTTAAATTTGCATA
1 AAAATTAAATTTATTATAAATTTAAATTT-CAAA
15508740 AAAATTAAATTTATTATAAATTTAAATTT-AAA
1 AAAATTAAATTTATTATAAATTTAAATTTCAAA
15508772 ATTAAATTAAAT
1 A--AAATTAAAT
15508784 GTCCAAAGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
32 3 0.08
34 35 0.92
ACGTcount: A:0.50, C:0.01, G:0.04, T:0.45
Consensus pattern (33 bp):
AAAATTAAATTTATTATAAATTTAAATTTCAAA
Found at i:15508781 original size:17 final size:16
Alignment explanation
Indices: 15508741--15508783 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
15508731 ATTTGCATAA
**
15508741 AAATTAAATTTATTAT
1 AAATTAAATTTAAAAT
15508757 AAATTTAAATTTAAAATT
1 AAA-TTAAATTTAAAA-T
15508775 AAATTAAAT
1 AAATTAAAT
15508784 GTCCAAAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 3 0.13
17 16 0.70
18 4 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATTAAATTTAAAAT
Found at i:15510097 original size:29 final size:29
Alignment explanation
Indices: 15510048--15510165 Score: 116
Period size: 29 Copynumber: 4.0 Consensus size: 29
15510038 ACAAGTCCCT
* * *
15510048 AAACTGTCCAAAAATTATATTTTTGACCCC
1 AAACTTTCC-AAAATTCTATTTTTAACCCC
*
15510078 AAACTTTCCAGAATTCTATTTTTAACCCC
1 AAACTTTCCAAAATTCTATTTTTAACCCC
* *
15510107 -AA-TTTCACCAAAAATTACCA-TTTTACCCCC
1 AAACTTT--CC-AAAATT-CTATTTTTAACCCC
15510137 AAACTTTCCAAAATTCTATTTTTAACCCC
1 AAACTTTCCAAAATTCTATTTTTAACCCC
15510166 GATTGCATCT
Statistics
Matches: 72, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
27 3 0.04
28 4 0.06
29 34 0.47
30 24 0.33
31 4 0.06
32 3 0.04
ACGTcount: A:0.35, C:0.28, G:0.03, T:0.35
Consensus pattern (29 bp):
AAACTTTCCAAAATTCTATTTTTAACCCC
Found at i:15510137 original size:59 final size:59
Alignment explanation
Indices: 15510074--15510306 Score: 283
Period size: 59 Copynumber: 4.0 Consensus size: 59
15510064 ATATTTTTGA
* *
15510074 CCCCAAACTTTCCAGAATTCTATTTTTAACCCCAATTTCACCAAAAATTACCATTTTAC
1 CCCCAAACATTCCAAAATTCTATTTTTAACCCCAATTTCACCAAAAATTACCATTTTAC
* * * * * *
15510133 CCCCAAACTTTCCAAAATTCTATTTTTAACCCCGATTGCATCTAAAATAACCATTTTAC
1 CCCCAAACATTCCAAAATTCTATTTTTAACCCCAATTTCACCAAAAATTACCATTTTAC
* * * ***
15510192 CGCCGAACATTCTAAAATTCTATTTTTAACCATGATTTCACCAAAAATTACCATTTTAC
1 CCCCAAACATTCCAAAATTCTATTTTTAACCCCAATTTCACCAAAAATTACCATTTTAC
* *
15510251 CCCTAAACATTCCAAAATTCAATTTTTAACCCCGAATTTTC-CC-AAAATTA-CATTTT
1 CCCCAAACATTCCAAAATTCTATTTTTAACCCC-AA-TTTCACCAAAAATTACCATTTT
15510307 TGCCCCCGAG
Statistics
Matches: 148, Mismatches: 24, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
58 6 0.04
59 135 0.91
60 3 0.02
61 4 0.03
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (59 bp):
CCCCAAACATTCCAAAATTCTATTTTTAACCCCAATTTCACCAAAAATTACCATTTTAC
Found at i:15510180 original size:30 final size:30
Alignment explanation
Indices: 15510146--15510222 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 30
15510136 CAAACTTTCC
*
15510146 AAAATTCTATTTTTAACC-CCGATTGCA-TCT
1 AAAATTCTATTTTTAACCGCCGA--ACATTCT
* *
15510176 AAAATAACCA-TTTT-ACCGCCGAACATTCT
1 AAAAT-TCTATTTTTAACCGCCGAACATTCT
15510205 AAAATTCTATTTTTAACC
1 AAAATTCTATTTTTAACC
15510223 ATGATTTCAC
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
28 4 0.11
29 15 0.41
30 16 0.43
31 2 0.05
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.36
Consensus pattern (30 bp):
AAAATTCTATTTTTAACCGCCGAACATTCT
Found at i:15510333 original size:118 final size:117
Alignment explanation
Indices: 15510089--15510335 Score: 302
Period size: 118 Copynumber: 2.1 Consensus size: 117
15510079 AACTTTCCAG
* * *
15510089 AATTCTATTTTTAACCCCAATTTCACCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCT
1 AATTCTATTTTTAACCACAATTTCACCAAAAATTACCATTTTACCCCCAAACATTCCAAAATTCA
* * * *
15510154 ATTTTTAACCCCGATTGCATCTAAAATAACCATTTTACCGCCGAACATTCTAA
66 ATTTTTAACCCCGATTGCA-CCAAAATAACCATTTTACCCCCGAACAGTCAAA
** *
15510207 AATTCTATTTTTAACCATGATTTCACCAAAAATTACCATTTTACCCCTAAACATTCCAAAATTCA
1 AATTCTATTTTTAACCACAATTTCACCAAAAATTACCATTTTACCCCCAAACATTCCAAAATTCA
* * * *
15510272 ATTTTTAACCCCGAATTTTC-CCAAAATTA-CATTTTTGCCCCCG-AGAGTCAAA
66 ATTTTTAACCCCG-A-TTGCACCAAAATAACCA-TTTTACCCCCGAACAGTCAAA
15510324 AATTACTATTTT
1 AATT-CTATTTT
15510336 ACCCTCGGGT
Statistics
Matches: 111, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
117 12 0.11
118 95 0.86
119 1 0.01
120 3 0.03
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.35
Consensus pattern (117 bp):
AATTCTATTTTTAACCACAATTTCACCAAAAATTACCATTTTACCCCCAAACATTCCAAAATTCA
ATTTTTAACCCCGATTGCACCAAAATAACCATTTTACCCCCGAACAGTCAAA
Found at i:15511910 original size:19 final size:19
Alignment explanation
Indices: 15511882--15511920 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
15511872 GAAAAGCTTA
15511882 AGGGTAAAAATGTAATTTT
1 AGGGTAAAAATGTAATTTT
* *
15511901 AGGGTCAAAATGTGATTTT
1 AGGGTAAAAATGTAATTTT
15511920 A
1 A
15511921 AACAAGTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.36
Consensus pattern (19 bp):
AGGGTAAAAATGTAATTTT
Found at i:15511941 original size:30 final size:29
Alignment explanation
Indices: 15511898--15512109 Score: 203
Period size: 30 Copynumber: 7.1 Consensus size: 29
15511888 AAAATGTAAT
* *
15511898 TTTAGGGTCAAAATGTGATTTT-AAACAAG
1 TTTAGGGTTAAAATGTAATTTTGAAA-AAG
**
15511927 TTTAGGGTTCAAAATGTAATTTTGGGAAAG
1 TTTAGGGTT-AAAATGTAATTTTGAAAAAG
*
15511957 TTTGAAGGGTTAAAATATAATTTT-ATAAAAG
1 TTT--AGGGTTAAAATGTAATTTTGA-AAAAG
* *
15511988 TTTAGGGGTTAAAATATAATTTTGGAAAAG
1 TTTA-GGGTTAAAATGTAATTTTGAAAAAG
* * *
15512018 TTTTAAGGTTAAAATATAATTTTGAAAAAA
1 -TTTAGGGTTAAAATGTAATTTTGAAAAAG
**
15512048 TTTAGGGGTTAAAATGTAATTTTGGGAAAG
1 TTTA-GGGTTAAAATGTAATTTTGAAAAAG
* *
15512078 TTTAAGGGTTAAAATGTGATTTTGGAAAAG
1 TTT-AGGGTTAAAATGTAATTTTGAAAAAG
15512108 TT
1 TT
15512110 CGAGGATTGC
Statistics
Matches: 155, Mismatches: 18, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
29 13 0.08
30 111 0.72
31 25 0.16
32 6 0.04
ACGTcount: A:0.39, C:0.01, G:0.22, T:0.38
Consensus pattern (29 bp):
TTTAGGGTTAAAATGTAATTTTGAAAAAG
Found at i:15511980 original size:61 final size:59
Alignment explanation
Indices: 15511901--15512092 Score: 262
Period size: 60 Copynumber: 3.2 Consensus size: 59
15511891 ATGTAATTTT
* * *
15511901 AGGGTCAAAATGTGATTTTAAACAAGTTTA-GGGTTCAAAATGTAATTTTGGGAAAGTTTGA
1 AGGGTTAAAATATAATTTTAAA-AAGTTTAGGGGTT-AAAATGTAATTTTGGGAAAGTTT-A
* *
15511962 AGGGTTAAAATATAATTTTATAAAAGTTTAGGGGTTAAAATATAATTTTGGAAAAGTTTTA
1 AGGGTTAAAATATAATTTTA-AAAAGTTTAGGGGTTAAAATGTAATTTTGGGAAAG-TTTA
*
15512023 A-GGTTAAAATATAATTTTGAAAAAATTTAGGGGTTAAAATGTAATTTTGGGAAAGTTTA
1 AGGGTTAAAATATAATTTT-AAAAAGTTTAGGGGTTAAAATGTAATTTTGGGAAAGTTTA
15512082 AGGGTTAAAAT
1 AGGGTTAAAAT
15512093 GTGATTTTGG
Statistics
Matches: 118, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
59 5 0.04
60 58 0.49
61 45 0.38
62 10 0.08
ACGTcount: A:0.41, C:0.02, G:0.21, T:0.36
Consensus pattern (59 bp):
AGGGTTAAAATATAATTTTAAAAAGTTTAGGGGTTAAAATGTAATTTTGGGAAAGTTTA
Found at i:15512078 original size:90 final size:92
Alignment explanation
Indices: 15511927--15512109 Score: 235
Period size: 90 Copynumber: 2.0 Consensus size: 92
15511917 TTTAAACAAG
* * ** * *
15511927 TTTAGGGTTCAAAATGTAATTTTGGGAAAGTTTGAAGGGTTAAAATATAATTTTATAAAAGTTTA
1 TTTAAGGTTCAAAATATAATTTTGAAAAAATTTGAAGGGTTAAAATATAATTTTAGAAAAGTTTA
*
15511992 GGGGTTAAAATATAATTTTGGAAAAGT
66 AGGGTTAAAATATAATTTTGGAAAAGT
* * * *
15512019 TTTAAGGTT-AAAATATAATTTTGAAAAAATTT-AGGGGTTAAAATGTAATTTTGGGAAAGTTTA
1 TTTAAGGTTCAAAATATAATTTTGAAAAAATTTGAAGGGTTAAAATATAATTTTAGAAAAGTTTA
* *
15512082 AGGGTTAAAATGTGATTTTGGAAAAGT
66 AGGGTTAAAATATAATTTTGGAAAAGT
15512109 T
1 T
15512110 CGAGGATTGC
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
90 51 0.65
91 19 0.24
92 8 0.10
ACGTcount: A:0.39, C:0.01, G:0.22, T:0.38
Consensus pattern (92 bp):
TTTAAGGTTCAAAATATAATTTTGAAAAAATTTGAAGGGTTAAAATATAATTTTAGAAAAGTTTA
AGGGTTAAAATATAATTTTGGAAAAGT
Found at i:15524800 original size:29 final size:30
Alignment explanation
Indices: 15524629--15524890 Score: 302
Period size: 30 Copynumber: 8.9 Consensus size: 30
15524619 GTAATTTTAA
* *
15524629 GGTTAAAATGTTATTTTGGAGAAGTTTAGG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
* * * *
15524659 GGTTAAAATGTGATTTTAGAGAAGTTTGGG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
*
15524689 GGTTAAAATGTAATTTTAGG-AAAGTTTAGA
1 GGTTAAAATGTAATTTT-GGAAAAGTTTAGG
* * *
15524719 GGTTAAAATATAATTTTGTAAAAGTTTAAG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
*
15524749 GGTTAAAATATAATTTTGGAAAAGTTTAGG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
*
15524779 GGTTAAAATATAATTTT-GAAAAGTTTAGG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
*
15524808 GGTTAAAATGTAATTTTGGGAAAGTTT-GAG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAG-G
* * *
15524838 GGTCAAAATGT-ATTTT-GAGAAGTTTA-A
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
* *
15524865 GGTCAAAATGTAATTTTGGGAAAGTT
1 GGTTAAAATGTAATTTTGGAAAAGTT
15524891 CAAGGACTGC
Statistics
Matches: 203, Mismatches: 22, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
27 11 0.05
28 12 0.06
29 41 0.20
30 138 0.68
31 1 0.00
ACGTcount: A:0.37, C:0.01, G:0.25, T:0.37
Consensus pattern (30 bp):
GGTTAAAATGTAATTTTGGAAAAGTTTAGG
Found at i:15527277 original size:31 final size:31
Alignment explanation
Indices: 15527239--15527300 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
15527229 ATCTAAGGCA
15527239 AATTTTTGCGTTATTCAAAG-AAGTAAACTTG
1 AATTTTTGCGTTA-TCAAAGAAAGTAAACTTG
* *
15527270 AATTTTTGCTTTATCCAAGAAAGTAAACTTG
1 AATTTTTGCGTTATCAAAGAAAGTAAACTTG
15527301 GAAGGTTGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 5 0.18
31 23 0.82
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (31 bp):
AATTTTTGCGTTATCAAAGAAAGTAAACTTG
Found at i:15529805 original size:7 final size:7
Alignment explanation
Indices: 15529766--15529823 Score: 71
Period size: 7 Copynumber: 8.1 Consensus size: 7
15529756 TTTAACCATG
15529766 ACCTTAA
1 ACCTTAA
*
15529773 ACCCTAA
1 ACCTTAA
*
15529780 ACCTTAG
1 ACCTTAA
*
15529787 ACTTTGAA
1 ACCTT-AA
15529795 ACCTTAA
1 ACCTTAA
15529802 ACCTTAA
1 ACCTTAA
*
15529809 ACTTTAA
1 ACCTTAA
15529816 ACCTTAA
1 ACCTTAA
15529823 A
1 A
15529824 TTTTAAACTC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
7 37 0.88
8 5 0.12
ACGTcount: A:0.41, C:0.26, G:0.03, T:0.29
Consensus pattern (7 bp):
ACCTTAA
Found at i:15529819 original size:21 final size:21
Alignment explanation
Indices: 15529769--15529839 Score: 88
Period size: 21 Copynumber: 3.3 Consensus size: 21
15529759 AACCATGACC
* *
15529769 TTAAACCCTAAACCTTAGACT
1 TTAAACCTTAAACCTTAAACT
15529790 TTGAAACCTTAAACCTTAAACT
1 TT-AAACCTTAAACCTTAAACT
**
15529812 TTAAACCTTAAATTTTAAACT
1 TTAAACCTTAAACCTTAAACT
*
15529833 CTAAACC
1 TTAAACC
15529840 CTTACTCTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
21 25 0.57
22 19 0.43
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.32
Consensus pattern (21 bp):
TTAAACCTTAAACCTTAAACT
Found at i:15529829 original size:7 final size:7
Alignment explanation
Indices: 15529777--15529838 Score: 52
Period size: 7 Copynumber: 8.7 Consensus size: 7
15529767 CCTTAAACCC
*
15529777 TAAACCT
1 TAAACTT
*
15529784 TAGACTT
1 TAAACTT
*
15529791 TGAAACCT
1 T-AAACTT
*
15529799 TAAACCT
1 TAAACTT
15529806 TAAACTT
1 TAAACTT
*
15529813 TAAACCT
1 TAAACTT
*
15529820 TAAATTT
1 TAAACTT
*
15529827 TAAACTC
1 TAAACTT
15529834 TAAAC
1 TAAAC
15529839 CCTTACTCTT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
7 39 0.89
8 5 0.11
ACGTcount: A:0.42, C:0.21, G:0.03, T:0.34
Consensus pattern (7 bp):
TAAACTT
Found at i:15529837 original size:14 final size:14
Alignment explanation
Indices: 15529769--15529831 Score: 63
Period size: 14 Copynumber: 4.4 Consensus size: 14
15529759 AACCATGACC
* *
15529769 TTAAACCCTAAACC
1 TTAAACCTTAAACT
* * *
15529783 TTAGACTTTGAAACC
1 TTAAACCTT-AAACT
15529798 TTAAACCTTAAACT
1 TTAAACCTTAAACT
*
15529812 TTAAACCTTAAATT
1 TTAAACCTTAAACT
15529826 TTAAAC
1 TTAAAC
15529832 TCTAAACCCT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
14 29 0.71
15 12 0.29
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.33
Consensus pattern (14 bp):
TTAAACCTTAAACT
Found at i:15530326 original size:5 final size:5
Alignment explanation
Indices: 15530316--15530342 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
15530306 CATCTTCCCC
15530316 ACCCA ACCCA ACCCA ACCCA ACCCA AC
1 ACCCA ACCCA ACCCA ACCCA ACCCA AC
15530343 AACTGCTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.59, G:0.00, T:0.00
Consensus pattern (5 bp):
ACCCA
Found at i:15531310 original size:21 final size:21
Alignment explanation
Indices: 15531285--15531327 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
15531275 AAATATTTAA
*
15531285 TTTGGTACTTAAGTTTTTTTT
1 TTTGGTACTTAAGTTTTGTTT
*
15531306 TTTGGTACTTGAGTTTTGTTT
1 TTTGGTACTTAAGTTTTGTTT
15531327 T
1 T
15531328 AATATTTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.12, C:0.05, G:0.19, T:0.65
Consensus pattern (21 bp):
TTTGGTACTTAAGTTTTGTTT
Found at i:15531623 original size:57 final size:58
Alignment explanation
Indices: 15531516--15531624 Score: 150
Period size: 57 Copynumber: 1.9 Consensus size: 58
15531506 AATTTGAAAA
* * *
15531516 AAAAAAATTCAAGTACTAAACTGAACATTAAAGTCAAATTTAAACGCCAAATTAAGAC
1 AAAAAAATTCAAGTACTAAACTGAACATTAAAGTCAAACTCAAACACCAAATTAAGAC
* *
15531574 AAAAAAATT-AAGTA-TCAAATTGAACATTAAAGTCAAACTCAAATACCAAAT
1 AAAAAAATTCAAGTACT-AAACTGAACATTAAAGTCAAACTCAAACACCAAAT
15531625 AACATATTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 1 0.02
57 35 0.78
58 9 0.20
ACGTcount: A:0.55, C:0.15, G:0.07, T:0.23
Consensus pattern (58 bp):
AAAAAAATTCAAGTACTAAACTGAACATTAAAGTCAAACTCAAACACCAAATTAAGAC
Found at i:15533035 original size:12 final size:12
Alignment explanation
Indices: 15533018--15533049 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
15533008 ATTTTTTTTA
15533018 AAAAAATTATAT
1 AAAAAATTATAT
*
15533030 AAAAAATAATAT
1 AAAAAATTATAT
15533042 AAAAAATT
1 AAAAAATT
15533050 TATTACAGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
AAAAAATTATAT
Found at i:15535880 original size:20 final size:20
Alignment explanation
Indices: 15535852--15535889 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15535842 TGGTAATCAT
*
15535852 TTTTATTTTATTTTTTTACC
1 TTTTATTTTATTTATTTACC
*
15535872 TTTTCTTTTATTTATTTA
1 TTTTATTTTATTTATTTA
15535890 TTTATATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTATTTTATTTATTTACC
Found at i:15542875 original size:22 final size:23
Alignment explanation
Indices: 15542819--15542876 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
15542809 TATAGATGAT
*
15542819 TTTATCTATTTTTTAAAAAAAATTA
1 TTTATC-ATTTTTCAAAAAAAA-TA
*
15542844 TTT-TGTATTTTTCAAAAAAAA-A
1 TTTAT-CATTTTTCAAAAAAAATA
15542866 TTTATCATTTT
1 TTTATCATTTT
15542877 GATTGATGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
22 9 0.32
23 1 0.04
24 15 0.54
25 3 0.11
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (23 bp):
TTTATCATTTTTCAAAAAAAATA
Found at i:15550554 original size:36 final size:35
Alignment explanation
Indices: 15550514--15550600 Score: 131
Period size: 34 Copynumber: 2.5 Consensus size: 35
15550504 TTGGTATGTT
15550514 GTTGCAGGTACTAATGGATTCATATTGGTTTTATGA
1 GTTGCAGGTACTAATGGATTCATATTGG-TTTATGA
* *
15550550 GTTGCAAGTACTAAT-GATTCATATTTGTTTATGA
1 GTTGCAGGTACTAATGGATTCATATTGGTTTATGA
*
15550584 GTTGCAGGTATTAATGG
1 GTTGCAGGTACTAATGG
15550601 CTTCTTCTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
34 20 0.43
35 12 0.26
36 14 0.30
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.41
Consensus pattern (35 bp):
GTTGCAGGTACTAATGGATTCATATTGGTTTATGA
Found at i:15551164 original size:11 final size:11
Alignment explanation
Indices: 15551152--15551236 Score: 57
Period size: 11 Copynumber: 7.5 Consensus size: 11
15551142 ACCAAACCAT
*
15551152 TTTAAATTTAT
1 TTTAAATTTAA
*
15551163 TTTAAAATTAAA
1 TTT-AAATTTAA
15551175 TTT--ATTCTAAA
1 TTTAAATT-T-AA
*
15551186 TTTAAATTTAT
1 TTTAAATTTAA
15551197 TTTAAATTTAAAA
1 TTTAAATTT--AA
* * *
15551210 TTCAAATCTAT
1 TTTAAATTTAA
15551221 TTTAAATTTAA
1 TTTAAATTTAA
15551232 TTTAA
1 TTTAA
15551237 GTTTGAATCT
Statistics
Matches: 56, Mismatches: 11, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
9 3 0.05
11 32 0.57
12 10 0.18
13 11 0.20
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:15551175 original size:17 final size:17
Alignment explanation
Indices: 15551152--15551276 Score: 101
Period size: 17 Copynumber: 7.3 Consensus size: 17
15551142 ACCAAACCAT
15551152 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* *
15551169 ATTAAATTTATTCTAAA
1 TTTAAATTTATTTTAAA
15551186 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* * * *
15551203 TTTAAAATTCAAATCT-AT
1 TTT-AAATT-TATTTTAAA
* *
15551221 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAA
* * *
15551238 TTTGAATCTAGTTTAAA
1 TTTAAATTTATTTTAAA
*
15551255 TTT-AATGTTATTATAAA
1 TTTAAAT-TTATTTTAAA
15551272 TTTAA
1 TTTAA
15551277 TGTCCAATAT
Statistics
Matches: 85, Mismatches: 18, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
16 7 0.08
17 65 0.76
18 10 0.12
19 3 0.04
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:15551210 original size:24 final size:24
Alignment explanation
Indices: 15551183--15551231 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
15551173 AATTTATTCT
* *
15551183 AAATTTAAATTTATTTTAAATTTA
1 AAATTCAAATCTATTTTAAATTTA
15551207 AAATTCAAATCTATTTTAAATTTA
1 AAATTCAAATCTATTTTAAATTTA
15551231 A
1 A
15551232 TTTAAGTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (24 bp):
AAATTCAAATCTATTTTAAATTTA
Found at i:15551289 original size:18 final size:17
Alignment explanation
Indices: 15551251--15551289 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
15551241 GAATCTAGTT
* *
15551251 TAAATTTAATGTTATTA
1 TAAATTTAATGTCAATA
15551268 TAAATTTAATGTCCAATA
1 TAAATTTAATGT-CAATA
15551286 TAAA
1 TAAA
15551290 AATTAAATCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (17 bp):
TAAATTTAATGTCAATA
Found at i:15551747 original size:28 final size:29
Alignment explanation
Indices: 15551716--15551772 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
15551706 AAATTAATAG
*
15551716 ACGAACCCTT-CTTTGAAAAAATCAGTAT
1 ACGAACCCTTCCTTTGAAAAAATAAGTAT
15551744 ACGAACCCTTCCTTTGAAAAAATAAGTAT
1 ACGAACCCTTCCTTTGAAAAAATAAGTAT
15551773 CTGAATCCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (29 bp):
ACGAACCCTTCCTTTGAAAAAATAAGTAT
Found at i:15553414 original size:59 final size:57
Alignment explanation
Indices: 15553270--15553520 Score: 222
Period size: 58 Copynumber: 4.3 Consensus size: 57
15553260 CATTAGAGGT
* ** * * * * * *
15553270 CCCTAAACTATCCAGAAATTATATTTTGACCCTCGAACTTTCAAAAATTATATTTTTAA
1 CCCTAAACT-TCCAAAAATTACGTTTTTACCCCCAAAATTCCAAAAATTACATTTTT-A
* *
15553329 CCC-AAACTTTCCAAAAATTACGTTTTTACCCCTAAAATTCCAAAAATTCCATTTTTGA
1 CCCTAAAC-TTCCAAAAATTACGTTTTTACCCCCAAAATTCCAAAAATTACATTTTT-A
*
15553387 CCCTGAAACTTCCAAAAATTACATTTTTACCCCCAAAATTCCAAAAATTACATTTTTA
1 CCCT-AAACTTCCAAAAATTACGTTTTTACCCCCAAAATTCCAAAAATTACATTTTTA
* * * * * *
15553445 CCCTAAAATTTCTAAAATTATGTTTTTACCCCC-AGATGTTC-AAAA-TATCATTTTTA
1 CCCTAAACTTCCAAAAATTACGTTTTTACCCCCAAAAT-TCCAAAAATTA-CATTTTTA
* *
15553501 GCCCTAAATTTCCCAAAATT
1 -CCCTAAACTTCCAAAAATT
15553521 GCTATTTTTG
Statistics
Matches: 161, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
55 2 0.01
56 15 0.09
57 42 0.26
58 49 0.30
59 49 0.30
60 4 0.02
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.36
Consensus pattern (57 bp):
CCCTAAACTTCCAAAAATTACGTTTTTACCCCCAAAATTCCAAAAATTACATTTTTA
Found at i:15553429 original size:88 final size:87
Alignment explanation
Indices: 15553293--15553463 Score: 238
Period size: 88 Copynumber: 2.0 Consensus size: 87
15553283 AGAAATTATA
* * * *
15553293 TTTTGACCCTCGAACTTTCAAAAATTATATTTTTAACCCAAACTTTCCAAAAATTACGTTTTTAC
1 TTTTGACCCTCGAACTTCCAAAAATTACATTTTTAACCCAAACATTCCAAAAATTACATTTTTA-
15553358 CCCTAAAATTCCAAAAATTCCAT
65 CCCTAAAATTCCAAAAATTCCAT
*
15553381 TTTTGACCCT-GAAACTTCCAAAAATTACATTTTTACCCCCAAA-ATTCCAAAAATTACATTTTT
1 TTTTGACCCTCG-AACTTCCAAAAATTACATTTTTA-ACCCAAACATTCCAAAAATTACATTTTT
* *
15553444 ACCCTAAAATTTCTAAAATT
64 ACCCTAAAATTCCAAAAATT
15553464 ATGTTTTTAC
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
87 18 0.24
88 50 0.68
89 6 0.08
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.36
Consensus pattern (87 bp):
TTTTGACCCTCGAACTTCCAAAAATTACATTTTTAACCCAAACATTCCAAAAATTACATTTTTAC
CCTAAAATTCCAAAAATTCCAT
Done.