Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 46 of 135
Found at i:16755712 original size:78 final size:78
Alignment explanation
Indices: 16755509--16755811 Score: 247
Period size: 78 Copynumber: 3.9 Consensus size: 78
16755499 GAATGAAGAT
* * * * * * * * *
16755509 TCCGATCTTTTACCCCGAGCCTGTGGTAGATC-ACAGTCAGTCAATCTCTTACCCCGAGCCT-GA
1 TCCGATCTCTTACCCTGAGCCTGAGGCAAATCAACA-TCAGCCAATCTTTTACCCCGAGCTTGGG
* * *
16755572 GTAGATTGCAGCCA
65 GCATATTGCAACCA
* * * * * * * *
16755586 TCCAATCTTTTA-CCTCAAGCTTG-GAGCAGATCAGCACCAGCCAATCTTTTACCTCGAGCTTGG
1 TCCGATCTCTTACCCT-GAGCCTGAG-GCAAATCAACATCAGCCAATCTTTTACCCCGAGCTTGG
*
16755649 GGCATATTGTAACCA
64 GGCATATTGCAACCA
* * *
16755664 TCCGATCTCTTATCCC-GAGCCTGGGGCAAATCAACATCAGCCAATCTTTTACCCCGAGCCTAGG
1 TCCGATCTCTTA-CCCTGAGCCTGAGGCAAATCAACATCAGCCAATCTTTTACCCCGAGCTTGGG
* *
16755728 GCAGATTGCAGCCA
65 GCATATTGCAACCA
* * * * *
16755742 TCTGATTTCTTACCCTGAGCTTGAGGCAGATCACCATCAGCCAATCTTTTACCCCGAGCTTGGGG
1 TCCGATCTCTTACCCTGAGCCTGAGGCAAATCAACATCAGCCAATCTTTTACCCCGAGCTTGGGG
*
16755807 TATAT
66 CATAT
16755812 CACCATCAGC
Statistics
Matches: 179, Mismatches: 39, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
76 3 0.02
77 45 0.25
78 128 0.72
79 1 0.01
80 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (78 bp):
TCCGATCTCTTACCCTGAGCCTGAGGCAAATCAACATCAGCCAATCTTTTACCCCGAGCTTGGGG
CATATTGCAACCA
Found at i:16755755 original size:117 final size:115
Alignment explanation
Indices: 16755629--16755923 Score: 290
Period size: 115 Copynumber: 2.5 Consensus size: 115
16755619 GCACCAGCCA
* * *** * * *
16755629 ATCTTTTACCTCGAGCTTGGGGCATATTGTAACCATCCGATCTCTTATCCCGAGCCTGGGGCAAA
1 ATCTTTTACCTCGAGCTTGAGGCAGATCACAACCAGCCAATCTCTTACCCCGAGCCTGGGGCAAA
* *
16755694 TCAACATCAGCCAATCTTTTACCCCGAGCCTAGGGCAGATTGCAGCCATCTG
66 TCAACATCAGCCAATC--TTACCCCGAGCCTAGGGCAAATTGCAGCCATCCG
* * * * *
16755746 AT-TTCTTACC-CTGAGCTTGAGGCAGATCACCATCAGCCAATCTTTTACCCCGAGCTTGGGGTA
1 ATCTT-TTACCTC-GAGCTTGAGGCAGATCACAACCAGCCAATCTCTTACCCCGAGCCTGGGGCA
* * * * *
16755809 TATCACCATCAGCCAATCTTACCCCGAGCTTGGGGTAAATTGCAGCCATCCG
64 AATCAACATCAGCCAATCTTACCCCGAGCCTAGGGCAAATTGCAGCCATCCG
* * * * * *
16755861 ATCTTTTACCTTGAGCCTGAGGCAGATCACCAA-CAGCTAATCACTTACCCCAAGCCTAGGGCA
1 ATCTTTTACCTCGAGCTTGAGGCAGATCA-CAACCAGCCAATCTCTTACCCCGAGCCTGGGGCA
16755924 GATTGCAACC
Statistics
Matches: 143, Mismatches: 30, Indels: 12
0.77 0.16 0.06
Matches are distributed among these distances:
115 75 0.52
116 7 0.05
117 61 0.43
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (115 bp):
ATCTTTTACCTCGAGCTTGAGGCAGATCACAACCAGCCAATCTCTTACCCCGAGCCTGGGGCAAA
TCAACATCAGCCAATCTTACCCCGAGCCTAGGGCAAATTGCAGCCATCCG
Found at i:16755783 original size:156 final size:155
Alignment explanation
Indices: 16755509--16755811 Score: 389
Period size: 156 Copynumber: 1.9 Consensus size: 155
16755499 GAATGAAGAT
* * * * * *
16755509 TCCGATCTTTTACCCCGAGCCTGTGGTAGATCACAGTCAGTCAATCTCTTACCCCGAGCCTGAGT
1 TCCGATCTCTTACCCCGAGCCTGGGGCAAATCACAGTCAGCCAATCTCTTACCCCGAGCCTGAGC
*
16755574 AGATTGCAGCCATCCAATCTTTTACCTCAAGCTTGGAGCAGATCAGCACCAGCCAATCTTTTACC
66 AGATTGCAGCCATCCAATCTTTTACCTCAAGCTTGGAGCAGATCACCACCAGCCAATCTTTTACC
*
16755639 TCGAGCTTGGGGCATATTGTAACCA
131 CCGAGCTTGGGGCATATTGTAACCA
* * *
16755664 TCCGATCTCTTATCCCGAGCCTGGGGCAAATCAACA-TCAGCCAATCTTTTACCCCGAGCCTAGG
1 TCCGATCTCTTACCCCGAGCCTGGGGCAAATC-ACAGTCAGCCAATCTCTTACCCCGAGCCT-GA
** * *
16755728 GCAGATTGCAGCCATCTGAT-TTCTTACC-CTGAGCTT-GAGGCAGATCACCATCAGCCAATCTT
64 GCAGATTGCAGCCATCCAATCTT-TTACCTC-AAGCTTGGA-GCAGATCACCACCAGCCAATCTT
*
16755790 TTACCCCGAGCTTGGGGTATAT
126 TTACCCCGAGCTTGGGGCATAT
16755812 CACCATCAGC
Statistics
Matches: 127, Mismatches: 16, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
155 55 0.43
156 72 0.57
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (155 bp):
TCCGATCTCTTACCCCGAGCCTGGGGCAAATCACAGTCAGCCAATCTCTTACCCCGAGCCTGAGC
AGATTGCAGCCATCCAATCTTTTACCTCAAGCTTGGAGCAGATCACCACCAGCCAATCTTTTACC
CCGAGCTTGGGGCATATTGTAACCA
Found at i:16755876 original size:115 final size:116
Alignment explanation
Indices: 16755668--16755923 Score: 318
Period size: 115 Copynumber: 2.2 Consensus size: 116
16755658 TAACCATCCG
* *
16755668 ATCTCTTATCCCGAGCCTGGGGCAAATCAACATCAGCCAATCTTTTACCCCGAGCCTAGGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAAATCAACATCAGCCAATC-TTTACCCCGAGCCTAGGGCAAA
* * *
16755733 TTGCAGCCATCTGATTTCTTACCCTGAGCTTGAGGCAGATCACCATCAGCCA
65 TTGCAGCCATCCGATTTCTTACCCTGAGCCTGAGGCAGATCACCAACAGCCA
* * * * * * * *
16755785 ATCTTTTACCCCGAGCTTGGGGTATATCACCATCAGCCAATC-TTACCCCGAGCTTGGGGTAAAT
1 ATCTCTTACCCCGAGCCTGGGGCAAATCAACATCAGCCAATCTTTACCCCGAGCCTAGGGCAAAT
* *
16755849 TGCAGCCATCCGATCTT-TTACCTTGAGCCTGAGGCAGATCACCAACAGCTA
66 TGCAGCCATCCGAT-TTCTTACCCTGAGCCTGAGGCAGATCACCAACAGCCA
* * *
16755900 ATCACTTACCCCAAGCCTAGGGCA
1 ATCTCTTACCCCGAGCCTGGGGCA
16755924 GATTGCAACC
Statistics
Matches: 117, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
115 79 0.68
116 2 0.02
117 36 0.31
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (116 bp):
ATCTCTTACCCCGAGCCTGGGGCAAATCAACATCAGCCAATCTTTACCCCGAGCCTAGGGCAAAT
TGCAGCCATCCGATTTCTTACCCTGAGCCTGAGGCAGATCACCAACAGCCA
Found at i:16755911 original size:193 final size:194
Alignment explanation
Indices: 16755587--16756004 Score: 538
Period size: 193 Copynumber: 2.2 Consensus size: 194
16755577 TTGCAGCCAT
* * * * *
16755587 CCAATCTTTTACCTCAAGCTTGGAGCAGATCAGCACCAGCCAATCTTTTACCTCGAGCTTGGGGC
1 CCAATCTTTTACCCCGAGCTTGGGGCAGATCACCACCAGCCAATC-TTTACCCCGAGCTTGGGGC
* * * * **
16755652 ATATTGTAACCATCCGATCTCTTATCCCGAGCCTGGGGCAAATCAACATCAGCCAATCTTTTACC
65 AAATTGCAACCATCCGATCTCTTATCCCGAGCCTGAGGCAAATCAACAACAGCCAATCACTTACC
* * * *
16755717 CCGAGCCTAGGGCAGATTGCAGCCA-TCTGAT-TTCTTACCCTGAGCTTGAGGCAGATCACCATC
130 CCAAGCCTAGGGCAGATTGCAACCATTC-GATCTT-TTACCCCGAGCCTGAGGCAGATCACCATC
16755780 AG
193 AG
* * * *
16755782 CCAATCTTTTACCCCGAGCTTGGGGTATATCACCATCAGCCAATC-TTACCCCGAGCTTGGGGTA
1 CCAATCTTTTACCCCGAGCTTGGGGCAGATCACCACCAGCCAATCTTTACCCCGAGCTTGGGGCA
* * * * * *
16755846 AATTGCAGCCATCCGATCTTTTA-CCTTGAGCCTGAGGCAGATCACCAACAGCTAATCACTTACC
66 AATTGCAACCATCCGATCTCTTATCC-CGAGCCTGAGGCAAATCAACAACAGCCAATCACTTACC
16755910 CCAAGCCTAGGGCAGATTGCAACCATTCGATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAG
130 CCAAGCCTAGGGCAGATTGCAACCATTCGATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAG
*
16755975 CCAATCTCTTACCCCGAGCTTGGGGCAGAT
1 CCAATCTTTTACCCCGAGCTTGGGGCAGAT
16756005 TGCAGCCATT
Statistics
Matches: 192, Mismatches: 28, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
192 2 0.01
193 148 0.77
194 4 0.02
195 38 0.20
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (194 bp):
CCAATCTTTTACCCCGAGCTTGGGGCAGATCACCACCAGCCAATCTTTACCCCGAGCTTGGGGCA
AATTGCAACCATCCGATCTCTTATCCCGAGCCTGAGGCAAATCAACAACAGCCAATCACTTACCC
CAAGCCTAGGGCAGATTGCAACCATTCGATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAG
Found at i:16755941 original size:78 final size:78
Alignment explanation
Indices: 16755785--16756064 Score: 330
Period size: 78 Copynumber: 3.6 Consensus size: 78
16755775 CCATCAGCCA
* * * * * * * * * * *
16755785 ATCTTTTACCCCGAGCTTGGGGTATATCACCATCAGCCAA--TCTTACCCCGAGCTTGGGGTAAA
1 ATCTTTTACCCTGAGCCTGAGGCAGATCACCATCAGCTAATCTCTTACCCCAAGCCTAGGGCAGA
*
16755848 TTGCAGCCATCCG
66 TTGCAGCCATTCG
* * *
16755861 ATCTTTTACCTTGAGCCTGAGGCAGATCACCAACAGCTAATCACTTACCCCAAGCCTAGGGCAGA
1 ATCTTTTACCCTGAGCCTGAGGCAGATCACCATCAGCTAATCTCTTACCCCAAGCCTAGGGCAGA
*
16755926 TTGCAACCATTCG
66 TTGCAGCCATTCG
* * * * *
16755939 ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCTTGGGGCAGA
1 ATCTTTTACCCTGAGCCTGAGGCAGATCACCATCAGCTAATCTCTTACCCCAAGCCTAGGGCAGA
*
16756004 TTGCAGCCATTCA
66 TTGCAGCCATTCG
* *
16756017 ATCTTTTACCCTGAGCCTGAGACAGATCACCATCAGTTAATCTCTTAC
1 ATCTTTTACCCTGAGCCTGAGGCAGATCACCATCAGCTAATCTCTTAC
16756065 TCTAGGCCAT
Statistics
Matches: 172, Mismatches: 30, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
76 32 0.19
78 140 0.81
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (78 bp):
ATCTTTTACCCTGAGCCTGAGGCAGATCACCATCAGCTAATCTCTTACCCCAAGCCTAGGGCAGA
TTGCAGCCATTCG
Found at i:16755943 original size:115 final size:116
Alignment explanation
Indices: 16755701--16755956 Score: 264
Period size: 115 Copynumber: 2.2 Consensus size: 116
16755691 AAATCAACAT
* * *
16755701 CAGCCAATCTTTTACCCCGAGCCTAGGGCAGATTGCAGCCATCTGATTTCTTACCCTGAGCTTGA
1 CAGCCAATC-TTTACCCCGAGCCTAGGGCAAATTGCAGCCATCCGATTTCTTACCCTGAGCCTGA
* ** * * * * * * *
16755766 GGCAGATCACCATCAGCCAATCTTTTACCCCGAGCTTGGGGTATATCACCAT
65 GGCAGATCACCAACAGCCAATCACTTACCCCAAGCCTAGGGCAGATCACAAC
* * * *
16755818 CAGCCAATC-TTACCCCGAGCTTGGGGTAAATTGCAGCCATCCGATCTT-TTACCTTGAGCCTGA
1 CAGCCAATCTTTACCCCGAGCCTAGGGCAAATTGCAGCCATCCGAT-TTCTTACCCTGAGCCTGA
* **
16755881 GGCAGATCACCAACAGCTAATCACTTACCCCAAGCCTAGGGCAGATTGCAAC
65 GGCAGATCACCAACAGCCAATCACTTACCCCAAGCCTAGGGCAGATCACAAC
** *
16755933 CATTCGATCTTTTACCCCGAGCCT
1 CAGCCAATC-TTTACCCCGAGCCT
16755957 GAGGCAGATC
Statistics
Matches: 112, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
115 89 0.79
116 2 0.02
117 21 0.19
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (116 bp):
CAGCCAATCTTTACCCCGAGCCTAGGGCAAATTGCAGCCATCCGATTTCTTACCCTGAGCCTGAG
GCAGATCACCAACAGCCAATCACTTACCCCAAGCCTAGGGCAGATCACAAC
Found at i:16755954 original size:271 final size:271
Alignment explanation
Indices: 16755513--16756052 Score: 685
Period size: 271 Copynumber: 2.0 Consensus size: 271
16755503 GAAGATTCCG
* * *
16755513 ATCTTTTACCCCGAGCCTGTGGTAGATCACAGTCAGTCAATCTCTTACCCCGAGCCTGAGTAGAT
1 ATCTTTTACCCCGAGCCTGGGGTAGATCACAGTCAGCCAA-CTCTTACCCCGAGCCTGAGTAAAT
* * * ** * *
16755578 TGCAGCCATCCAATCTTTTACCTCAAGCTTGGAGCAGATCAGCACCAGCCAATCTTTTACCTCGA
65 TGCAGCCATCCAATCTTTTACCTCAAGCCTGGAGCAGATCACCAACAGCCAATCACTTACCCCAA
* * * * * *
16755643 GCTTGGGGCATATTGTAACCATCCGATCTCTTATCCCGAGCCTGGGGCAAATCAACATCAGCCAA
130 GCCTAGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTGAGGCAAATCAACATCAGCCAA
* * * *
16755708 TCTTTTACCCCGAGCCTAGGGCAGATTGCAGCCA-TCTGAT-TTCTTACCCTGAGCTTGAGGCAG
195 TCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATTC-AATCTT-TTACCCTGAGCCTGAGACAG
16755771 ATCACCATCAGCCA
258 ATCACCATCAGCCA
* * * *
16755785 ATCTTTTACCCCGAGCTTGGGGTATATCACCA-TCAGCCAA-TCTTACCCCGAGCTTGGGGTAAA
1 ATCTTTTACCCCGAGCCTGGGGTAGATCA-CAGTCAGCCAACTCTTACCCCGAGCCT-GAGTAAA
* ** *
16755848 TTGCAGCCATCCGATCTTTTACCTTGAGCCT-GAGGCAGATCACCAACAGCTAATCACTTACCCC
64 TTGCAGCCATCCAATCTTTTACCTCAAGCCTGGA-GCAGATCACCAACAGCCAATCACTTACCCC
* * * *
16755912 AAGCCTAGGGCAGATTGCAACCATTCGATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAGCC
128 AAGCCTAGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTGAGGCAAATCAACATCAGCC
* *
16755977 AATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATTCAATCTTTTACCCTGAGCCTGAGACAG
193 AATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATTCAATCTTTTACCCTGAGCCTGAGACAG
16756042 ATCACCATCAG
258 ATCACCATCAG
16756053 TTAATCTCTT
Statistics
Matches: 229, Mismatches: 34, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
270 16 0.07
271 174 0.76
272 37 0.16
273 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (271 bp):
ATCTTTTACCCCGAGCCTGGGGTAGATCACAGTCAGCCAACTCTTACCCCGAGCCTGAGTAAATT
GCAGCCATCCAATCTTTTACCTCAAGCCTGGAGCAGATCACCAACAGCCAATCACTTACCCCAAG
CCTAGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTGAGGCAAATCAACATCAGCCAAT
CTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATTCAATCTTTTACCCTGAGCCTGAGACAGATC
ACCATCAGCCA
Found at i:16756059 original size:39 final size:39
Alignment explanation
Indices: 16755513--16756064 Score: 223
Period size: 39 Copynumber: 14.2 Consensus size: 39
16755503 GAAGATTCCG
* * *
16755513 ATCTTTTACCCCGAGCCTGTGGTAGATCA-CAGTCAGTCA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCA-TCAGTCA
*
16755552 ATCTCTTACCCCGAGCCTGA-GTAGATTGCAGCCATC---CA
1 ATCTCTTACCCCGAGCCTGAGGCAGA-T-CA-CCATCAGTCA
* * * * * * *
16755590 ATCTTTTACCTCAAGCTTG-GAGCAGATCAGCACCAGCCA
1 ATCTCTTACCCCGAGCCTGAG-GCAGATCACCATCAGTCA
* * * * * * *
16755629 ATCTTTTACCTCGAGCTTGGGGCATATTGTAACCATC---CG
1 ATCTCTTACCCCGAGCCTGAGGCAGA---TCACCATCAGTCA
* * * * *
16755668 ATCTCTTATCCCGAGCCTGGGGCAAATCAACATCAGCCA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAGTCA
* *
16755707 ATCTTTTACCCCGAGCCT-AGGGCAGATTGCAGCCATC--T-G
1 ATCTCTTACCCCGAGCCTGA-GGCAGA-T-CA-CCATCAGTCA
* * * *
16755746 ATTTCTTACCCTGAGCTTGAGGCAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAGTCA
* * * * * *
16755785 ATCTTTTACCCCGAGCTTGGGGTATATCACCATCAGCCA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAGTCA
* * * * *
16755824 A--TCTTACCCCGAGCTTGGGGTAAATTGCAGCCATC---CG
1 ATCTCTTACCCCGAGCCTGAGGCAGA-T-CA-CCATCAGTCA
* ** *
16755861 ATCTTTTACCTTGAGCCTGAGGCAGATCACCAACAG-CTA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAGTC-A
* * ** * * * *
16755900 ATCACTTACCCCAAGCCT-AGGGCAGATTGCAACCATTCG
1 ATCTCTTACCCCGAGCCTGA-GGCAGATCACCATCAGTCA
* *
16755939 ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAGTCA
* *
16755978 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCAT---TCA
1 ATCTCTTACCCCGAGCCTGAGGCAGA-T-CA-CCATCAGTCA
* * * *
16756017 ATCTTTTACCCTGAGCCTGAGACAGATCACCATCAGTTA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAGTCA
16756056 ATCTCTTAC
1 ATCTCTTAC
16756065 TCTAGGCCAT
Statistics
Matches: 386, Mismatches: 86, Indels: 82
0.70 0.16 0.15
Matches are distributed among these distances:
36 22 0.06
37 31 0.08
38 29 0.08
39 270 0.70
40 13 0.03
41 6 0.02
42 15 0.04
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAGTCA
Found at i:16756091 original size:156 final size:154
Alignment explanation
Indices: 16755785--16756064 Score: 425
Period size: 156 Copynumber: 1.8 Consensus size: 154
16755775 CCATCAGCCA
* * * * *
16755785 ATCTTTTACCCCGAGCTTGGGGTATATCACCATCAGCCAATCTTACCCCGAGCTTGGGGTAAATT
1 ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAGCCAATCTTACCCCGAGCTTGGGGCAAATT
* * *
16755850 GCAGCCATCCGATCTTTTACCTTGAGCCTGAGGCAGATCACCAACAGCTAATCACTTACCCCAAG
66 GCAGCCATCCAATCTTTTACCCTGAGCCTGAGACAGATCACCAACAGCTAATCACTTACCCCAAG
16755915 CCTAGGGCAGATTGCAACCATTCG
131 CCTAGGGCAGATTGCAACCATTCG
*
16755939 ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCTTGGGGCAGA
1 ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAGCCAA--TCTTACCCCGAGCTTGGGGCAAA
* * * *
16756004 TTGCAGCCATTCAATCTTTTACCCTGAGCCTGAGACAGATCACCATCAGTTAATCTCTTAC
64 TTGCAGCCATCCAATCTTTTACCCTGAGCCTGAGACAGATCACCAACAGCTAATCACTTAC
16756065 TCTAGGCCAT
Statistics
Matches: 111, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
154 36 0.32
156 75 0.68
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (154 bp):
ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAGCCAATCTTACCCCGAGCTTGGGGCAAATT
GCAGCCATCCAATCTTTTACCCTGAGCCTGAGACAGATCACCAACAGCTAATCACTTACCCCAAG
CCTAGGGCAGATTGCAACCATTCG
Found at i:16756104 original size:78 final size:77
Alignment explanation
Indices: 16755782--16756096 Score: 282
Period size: 78 Copynumber: 4.1 Consensus size: 77
16755772 TCACCATCAG
* * * * * * * *
16755782 CCAATCTTTTACCCCGAGCTTGGGGTATATCACCATCAGCCAA--TCTTACCCCGAGCTTGGG-G
1 CCAATCTTTTACCCTGAGCCTGAGGCAGATCACCATCAGCTAATCTCTTACCCAG-GCCTGGGCG
* *
16755844 TAAATTGCAGCCAT
65 -AGATTGCAACCAT
* * * * *
16755858 CCGATCTTTTACCTTGAGCCTGAGGCAGATCACCAACAGCTAATCACTTACCCCAAGCCTAGGGC
1 CCAATCTTTTACCCTGAGCCTGAGGCAGATCACCATCAGCTAATCTCTTA-CCCAGGCCT-GGGC
16755923 -AGATTGCAACCAT
64 GAGATTGCAACCAT
* * * * * *
16755936 TCGATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCTTGGG-G
1 CCAATCTTTTACCCTGAGCCTGAGGCAGATCACCATCAGCTAATCTCTTACCCAG-GCCTGGGCG
*
16756000 CAGATTGCAGCCAT
65 -AGATTGCAACCAT
* * * *
16756014 TCAATCTTTTACCCTGAGCCTGAGACAGATCACCATCAGTTAATCTCTTACTCTAGGCCATGGGC
1 CCAATCTTTTACCCTGAGCCTGAGGCAGATCACCATCAGCTAATCTCTTAC-CCAGGCC-TGGGC
16756079 GA-ATTGCAACCAT
64 GAGATTGCAACCAT
16756092 CCAAT
1 CCAAT
16756097 ATCTTACCTA
Statistics
Matches: 193, Mismatches: 35, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
76 34 0.18
77 6 0.03
78 139 0.72
79 13 0.07
80 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (77 bp):
CCAATCTTTTACCCTGAGCCTGAGGCAGATCACCATCAGCTAATCTCTTACCCAGGCCTGGGCGA
GATTGCAACCAT
Found at i:16756104 original size:156 final size:154
Alignment explanation
Indices: 16755790--16756104 Score: 400
Period size: 156 Copynumber: 2.0 Consensus size: 154
16755780 AGCCAATCTT
* * * * *
16755790 TTACCCCGAGCTTGGGGTATATCACCATCAGCCAATCTTACCCCGAGCTTGGGGTAAATTGCAGC
1 TTACCCCGAGCCTGAGGCAGATCACCATCAGCCAATCTTACCCCGAGCTTGGGGCAAATTGCAGC
* * *
16755855 CATCCGATCTTTTACCTTGAGCCTGAGGCAGATCACCAACAGCTAATCACTTACCCCAAGCCTAG
66 CATCCAATCTTTTACCCTGAGCCTGAGACAGATCACCAACAGCTAATCACTTACCCCAAGCCTAG
* * * *
16755920 GGCAGATTGCAACCATTCGATCTT
131 GGCAGATTGCAACCATCCAATATC
*
16755944 TTACCCCGAGCCTGAGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCTTGGGGCAGATTGCA
1 TTACCCCGAGCCTGAGGCAGATCACCATCAGCCAA--TCTTACCCCGAGCTTGGGGCAAATTGCA
* * * * * * *
16756009 GCCATTCAATCTTTTACCCTGAGCCTGAGACAGATCACCATCAGTTAATCTCTTACTCTAGGCC-
64 GCCATCCAATCTTTTACCCTGAGCCTGAGACAGATCACCAACAGCTAATCACTTACCCCAAGCCT
16756073 ATGGGC-GAATTGCAACCATCCAATATC
129 A-GGGCAG-ATTGCAACCATCCAATATC
16756100 TTACC
1 TTACC
16756105 TAAAAAGAAA
Statistics
Matches: 137, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
154 31 0.23
155 2 0.01
156 104 0.76
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (154 bp):
TTACCCCGAGCCTGAGGCAGATCACCATCAGCCAATCTTACCCCGAGCTTGGGGCAAATTGCAGC
CATCCAATCTTTTACCCTGAGCCTGAGACAGATCACCAACAGCTAATCACTTACCCCAAGCCTAG
GGCAGATTGCAACCATCCAATATC
Found at i:16756918 original size:11 final size:11
Alignment explanation
Indices: 16756902--16756926 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16756892 TTTTCCCTTT
16756902 CGATTTTCACA
1 CGATTTTCACA
16756913 CGATTTTCACA
1 CGATTTTCACA
16756924 CGA
1 CGA
16756927 AATTAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (11 bp):
CGATTTTCACA
Found at i:16762092 original size:57 final size:58
Alignment explanation
Indices: 16762031--16762140 Score: 168
Period size: 57 Copynumber: 1.9 Consensus size: 58
16762021 GTTTGGCAAC
* *
16762031 TAATGGCCGACACCAAAAAATATTAATAAAAAATATTTT-TTTTTGGTGTTTGACAGG
1 TAATGGCCGACACCAAAAAACATGAATAAAAAATATTTTCTTTTTGGTGTTTGACAGG
* * *
16762088 TAATGGTCGGCACCAAAAAACATGAATAAAAAATATTTTCTTTTTGGTTTTTG
1 TAATGGCCGACACCAAAAAACATGAATAAAAAATATTTTCTTTTTGGTGTTTG
16762141 TCTTATAGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 35 0.74
58 12 0.26
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (58 bp):
TAATGGCCGACACCAAAAAACATGAATAAAAAATATTTTCTTTTTGGTGTTTGACAGG
Found at i:16762415 original size:6 final size:6
Alignment explanation
Indices: 16762404--16762430 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
16762394 ATGAAATTGT
16762404 AATGAA AATGAA AATGAA AATGAA AAT
1 AATGAA AATGAA AATGAA AATGAA AAT
16762431 ATTTTAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.19
Consensus pattern (6 bp):
AATGAA
Found at i:16762967 original size:30 final size:30
Alignment explanation
Indices: 16762933--16762993 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
16762923 GTTTAATTAC
*
16762933 ATATTTTATATTTTAAAATAATATTGGGTT
1 ATATTATATATTTTAAAATAATATTGGGTT
16762963 ATATTATATATTTTAAAATAATATTGGGTT
1 ATATTATATATTTTAAAATAATATTGGGTT
16762993 A
1 A
16762994 CTTATCATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (30 bp):
ATATTATATATTTTAAAATAATATTGGGTT
Found at i:16765519 original size:657 final size:656
Alignment explanation
Indices: 16763005--16769159 Score: 11360
Period size: 656 Copynumber: 9.4 Consensus size: 656
16762995 TTATCATGTT
* * * *
16763005 GTTAATTATTATTGCATCACTCACATTATTATTAAATTTAAAATTTAATTTAATTTTATTATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
* *
16763070 CAATTAAACTAGATTTTTTTTATAAAATTAGAATCAGCGTTAATGATTTTCAT-TTTTATAATAA
66 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16763134 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
* *
16763199 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATTGTG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTATATGGTG
* **
16763264 TGATTGGATCACCACAAAACGTTTAAAATCCGTTGTAAAAAATATTTTACTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
*
16763329 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACTCTCACACGCCCAAAATTGGTA
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
16763394 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
* * * *
16763459 CGATCTTTTAAAAACCTTGCATGATTTTTAAAAATCCTATTGGAGACAAATTGTGCATGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
*
16763524 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGACACTATGTTCTCAAATTTTCGAAAT
521 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
*
16763589 TGCAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
586 TGAAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
16763654 CCGTAC
651 CCGTAC
16763660 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16763725 CAATTAAACTAGA-TTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
*
16763789 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAATAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
16763854 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTTATATGGT
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATC-TTTTTATATGGT
*
16763919 GTGATTGGATCACCACATAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
*
16763984 AAAACGGGTTCGGGAGTAGGTTACGTATGAGCAAAGATTAGCACCCTCACACGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
16764049 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
16764114 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
16764179 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
520 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
*
16764244 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
585 TTGAAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
16764309 CCCGTAC
650 CCCGTAC
*
16764316 GTTAGTTATTATTGCATCACTCACATTATT-TTTAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16764380 CAATTAAACTAGATTTTTTTTTATAAAATTAGAACTAGCTTTAATGATTTTCATCTTTTATAATA
66 CAATTAAACTAGA-TTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATA
16764445 ATTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAA
130 ATTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAA
* *
16764510 AATAAAAA-GGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATTGT
195 AATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTATATGGT
* *
16764574 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTGTAAAAAATATTTTGCTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
*
16764639 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACTCTCACACGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
16764704 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
* * * *
16764769 ACGATCTTTTAAAAACCTTGCATGATTTTTAAAAATCCTATTGGAGACAAATTGTGCATGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
*
16764834 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGACACTATGTTCTCAAATTTTCGAAA
520 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
*
16764899 TTGCAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
585 TTGAAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
16764964 CCCGTAC
650 CCCGTAC
16764971 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16765036 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
*
16765101 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAATAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
16765166 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTTATATGGT
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATC-TTTTTATATGGT
*
16765231 GTGATTGGATCACCACATAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
*
16765296 AAAACGGGTTCGGGAGTAGGTTACGTATGAGCAAAGATTAGCACCCTCACACGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
16765361 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
16765426 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
16765491 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
520 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
*
16765556 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
585 TTGAAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
16765621 CCCGTAC
650 CCCGTAC
*
16765628 GTTAGTTATTATTGCATCACTCACATTATT-TTTAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16765692 CAATTAAACTAGATTTTTTTTTATAAAATTAGAACTAGCTTTAATGATTTTCATCTTTTATAATA
66 CAATTAAACTAGA-TTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATA
16765757 ATTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAA
130 ATTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAA
* *
16765822 AATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATTGT
195 AATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTATATGGT
* *
16765887 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTGTAAAAAATATTTTGCTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
*
16765952 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACTCTCACACGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
16766017 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
* * * *
16766082 ACGATCTTTTAAAAACCTTGCATGATTTTTAAAAATCCTATTGGAGACAAATTGTGCATGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
*
16766147 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGACACTATGTTCTCAAATTTTCGAAA
520 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
*
16766212 TTGCAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
585 TTGAAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
16766277 CCCGTAC
650 CCCGTAC
16766284 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16766349 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16766414 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
16766479 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTTATATGGT
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATC-TTTTTATATGGT
*
16766544 GTGATTGGATCACCACATAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
*
16766609 AAAACGGGTTCGGGAGTAGGTTACGTATGAGCAAAGATTAGCACCCTCACACGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
16766674 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
16766739 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
16766804 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
520 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
*
16766869 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
585 TTGAAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
16766934 CCCGTAC
650 CCCGTAC
*
16766941 GTTAGTTATTATTGCATCACTCACATTATT-TTTAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16767005 CAATTAAACTAGATTTTTTTTATAAAATTAGAACTAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16767070 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
* *
16767135 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATTGTG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTATATGGTG
* *
16767200 TGATTGGATCACCACAAAACGTTTAAAATCCGTTGTAAAAAATATTTTGCTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
*
16767265 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACTCTCACACGCCCAAAATTGGTA
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
16767330 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
* * * *
16767395 CGATCTTTTAAAAACCTTGCATGATTTTTAAAAATCCTATTGGAGACAAATTGTGCATGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
*
16767460 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGACACTATGTT-TCAAATTTTCGAAAT
521 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
*
16767524 TGCAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
586 TGAAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
16767589 CCGTAC
651 CCGTAC
16767595 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16767660 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16767725 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
16767790 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTTATATGGT
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATC-TTTTTATATGGT
*
16767855 GTGATTGGATCACCACATAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
16767920 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
*
16767985 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAAATAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
16768050 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
16768115 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
520 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
* * *
16768180 CTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCGCAC
585 TTGAAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
16768245 CCCGTAC
650 CCCGTAC
16768252 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
16768317 CAATTAAACTAGATTTTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAAT
66 CAATTAAACTAGA--TTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAAT
*
16768382 AATTCAAAAAAACTGTCGAAACGTTTATTTTCGAGGAAAACAAATAAGTCTCAAACAATATTTAA
129 AATTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAA
* *
16768447 AAATAAAAAGGGGGTATTTTAAATGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTATATGA
194 AAATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTATATGG
16768512 TGTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCA
259 TGTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCA
* *
16768577 GAAAACGGGTTCGGGAGTAGGTTACGTACGAG-AAA-ATTAACACCCTCACACGCCCAAAATTGG
324 GAAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGG
16768640 TACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAA
389 TACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAA
**
16768705 TACGATCTTTTAAAAACTTTGCATGATTTCAGAAAAATCCTATTAGAGAAAAATTGTGCGTGTTT
454 TACGATCTTTTAAAAACTTTGCATGATTT-TTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTT
16768770 CGAATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGA
518 CGAATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGA
*
16768835 AATTGAAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCATGAATTATACGAAAATCAC
583 AATTGAAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCAC
16768900 ACCCCGTAC
648 ACCCCGTAC
16768909 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
16768974 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
*
16769039 TTCAAAAAAACTGTCGAAACGTTTATTTTC-GGGAAAATAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
* *
16769103 ATAAAAAGGGGGTATTTT-AACGATCGAAAAAAGTGGGAGTCACGACCAATCTTTTTA
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTA
16769160 AAAATAAAAA
Statistics
Matches: 5335, Mismatches: 149, Indels: 34
0.97 0.03 0.01
Matches are distributed among these distances:
653 36 0.01
654 200 0.04
655 1398 0.26
656 1838 0.34
657 1592 0.30
658 105 0.02
659 166 0.03
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (656 bp):
GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTATATGGTG
TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
TGAAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
CCGTAC
Found at i:16773203 original size:12 final size:11
Alignment explanation
Indices: 16773186--16773229 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
16773176 TCGACGTGTT
16773186 AAAAAAAAGAGA
1 AAAAAAAAGA-A
16773198 AAAAAAAAGAA
1 AAAAAAAAGAA
* *
16773209 AAATAAAACAA
1 AAAAAAAAGAA
16773220 ATAAAAAAAG
1 A-AAAAAAAG
16773230 GGTCAAGATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.84, C:0.02, G:0.09, T:0.05
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:16773289 original size:18 final size:19
Alignment explanation
Indices: 16773268--16773305 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
16773258 CTTGAAAACC
*
16773268 AAGGCAAAAAA-AAAGGAA
1 AAGGAAAAAAAGAAAGGAA
16773286 AAGGAAAAAAAGAAAGGAA
1 AAGGAAAAAAAGAAAGGAA
16773305 A
1 A
16773306 GTCAACACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.74, C:0.03, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGGAAAAAAAGAAAGGAA
Found at i:16774217 original size:7 final size:7
Alignment explanation
Indices: 16774195--16774262 Score: 54
Period size: 7 Copynumber: 10.0 Consensus size: 7
16774185 AAAAGAAAAG
*
16774195 AAAAGAA
1 AAAAGGA
*
16774202 AAAAAGA
1 AAAAGGA
16774209 AAAAGGA
1 AAAAGGA
16774216 AAAAGGA
1 AAAAGGA
16774223 AAAA-GA
1 AAAAGGA
16774229 AAATA-GA
1 AAA-AGGA
*
16774236 AAATAGAA
1 AAA-AGGA
*
16774244 AAAACGA
1 AAAAGGA
16774251 AAAA--A
1 AAAAGGA
16774256 AAAAGGA
1 AAAAGGA
16774263 GAGGTCGAGG
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
5 5 0.10
6 5 0.10
7 37 0.73
8 4 0.08
ACGTcount: A:0.78, C:0.01, G:0.18, T:0.03
Consensus pattern (7 bp):
AAAAGGA
Found at i:16774217 original size:20 final size:19
Alignment explanation
Indices: 16774163--16774260 Score: 85
Period size: 20 Copynumber: 5.0 Consensus size: 19
16774153 ATAAATAAAT
*
16774163 AAAAAAAGAAAGAA-AAAAA
1 AAAAAAAGAAA-AAGAAAAG
16774182 AAAAAAAG-AAAAGAAAAG
1 AAAAAAAGAAAAAGAAAAG
16774200 AAAAAAAGAAAAAGGAAAA-
1 AAAAAAAGAAAAA-GAAAAG
*
16774219 AGGAAAAAGAAAATAGAAAATAG
1 A-AAAAAAGAAAA-AG-AAA-AG
* *
16774242 AAAAAACGAAAAAAAAAAG
1 AAAAAAAGAAAAAGAAAAG
16774261 GAGAGGTCGA
Statistics
Matches: 66, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
17 2 0.03
18 14 0.21
19 15 0.23
20 19 0.29
21 5 0.08
22 10 0.15
23 1 0.02
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.02
Consensus pattern (19 bp):
AAAAAAAGAAAAAGAAAAG
Found at i:16774218 original size:14 final size:13
Alignment explanation
Indices: 16774164--16774259 Score: 85
Period size: 13 Copynumber: 7.4 Consensus size: 13
16774154 TAAATAAATA
16774164 AAAAAAGAAAGAA-
1 AAAAAAGAAA-AAG
16774177 AAAAAA-AAAAA-
1 AAAAAAGAAAAAG
*
16774188 AGAAAAG-AAAAG
1 AAAAAAGAAAAAG
16774200 AAAAAAAGAAAAAGG
1 -AAAAAAGAAAAA-G
*
16774215 AAAAAGGAAAAAG
1 AAAAAAGAAAAAG
*
16774228 AAAATAGAAAATAG
1 AAAAAAGAAAA-AG
16774242 AAAAAACGAAAAA-
1 AAAAAA-GAAAAAG
16774255 AAAAA
1 AAAAA
16774260 GGAGAGGTCG
Statistics
Matches: 70, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
11 11 0.16
12 3 0.04
13 27 0.39
14 23 0.33
15 6 0.09
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.02
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:16774259 original size:40 final size:39
Alignment explanation
Indices: 16774149--16774262 Score: 119
Period size: 40 Copynumber: 2.9 Consensus size: 39
16774139 CGGATTCAAT
* **
16774149 GAAAATAAATAAATA-AAAAAAGAAAGAAAAAAAAAAAAAA
1 GAAAATAGA-AAATAGAAAAAAGAAA-AAAAAAAGGAAAAA
*
16774189 G-AAA-AGAAAAGA-AAAAAAGAAAAAGGAAAAAGGAAAAA
1 GAAAATAGAAAATAGAAAAAAGAAAAA--AAAAAGGAAAAA
16774227 GAAAATAGAAAATAGAAAAAACGAAAAAAAAAAGGA
1 GAAAATAGAAAATAGAAAAAA-GAAAAAAAAAAGGA
16774263 GAGGTCGAGG
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
36 2 0.03
37 14 0.22
38 13 0.21
39 6 0.10
40 16 0.25
41 6 0.10
42 6 0.10
ACGTcount: A:0.80, C:0.01, G:0.15, T:0.04
Consensus pattern (39 bp):
GAAAATAGAAAATAGAAAAAAGAAAAAAAAAAGGAAAAA
Found at i:16775285 original size:50 final size:50
Alignment explanation
Indices: 16775204--16775644 Score: 304
Period size: 50 Copynumber: 8.9 Consensus size: 50
16775194 GAAAAACATG
* * *
16775204 AAGATTTGAAGGGAAAGGTTGAGGCCACAACGGCGAACCCGGTACCTTAA
1 AAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTTAA
** * *
16775254 AAGATGT-AACGGGAAAGGTTGAGATCGCAACGACGAACCCGGTACCAT-G
1 AAGATGTGAA-GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTTAA
* *** *** * * *
16775303 AAGATTTGAAGGG-AAGGATTGAGGCCGCGGTGGTAAATCCGGTACCTCAG
1 AAGATGTGAAGGGAAAGG-TTGAGGCCGCAACGACGAACCCGGTACCTTAA
* * * * *
16775353 AGGATTTGAAGGGAAAGGTTGAGGTCGCAACGACGAACTCGATACCTTAA
1 AAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTTAA
* * * *
16775403 AAGATGTGACGGGAAAGGTTGAGGCCGCAACGACGAACCCGATACGTCAA
1 AAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTTAA
* * * * * * * * * * *
16775453 AAGATGTGATA-GAAAAGATTCAGACTGGAACGGCGAATCCGATACCAT-G
1 AAGATGTGA-AGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTTAA
* * * * * *
16775502 AA-ATATGATGGGAAAGGTTGTA-GCCGCAATGGCGAACCCGGTACCAT-G
1 AAGATGTGAAGGGAAAGGTTG-AGGCCGCAACGACGAACCCGGTACCTTAA
* * * * * * * **
16775550 ATGATTTTAAAGGAAAGGTTAAGGCCGTAACGATGAACTTGGTACCTTAA
1 AAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTTAA
* *
16775600 AAGATATGAAGGGAAAGGTTGAGGCCGTAACGACGAACCCGGTAC
1 AAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTAC
16775645 AATAGAAAAC
Statistics
Matches: 295, Mismatches: 85, Indels: 22
0.73 0.21 0.05
Matches are distributed among these distances:
48 38 0.13
49 64 0.22
50 189 0.64
51 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.30, T:0.18
Consensus pattern (50 bp):
AAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTTAA
Found at i:16775979 original size:41 final size:41
Alignment explanation
Indices: 16775884--16775981 Score: 121
Period size: 41 Copynumber: 2.4 Consensus size: 41
16775874 TTACACCATC
* * *
16775884 ATTC-AGTCTTTTACCCTTAATCAAGAAGGACAGATTGAAG
1 ATTCTAGTCTTTTACCCTTAATCAAGAAAGACAGAATAAAG
*
16775924 ATTCTAGTCCTTTACCCTTAATCAAGAATAG-CAGAATAAAG
1 ATTCTAGTCTTTTACCCTTAATCAAGAA-AGACAGAATAAAG
16775965 ATTCT-GATCTTTTACCC
1 ATTCTAG-TCTTTTACCC
16775982 CGAGCCTGGG
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
40 5 0.10
41 44 0.88
42 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (41 bp):
ATTCTAGTCTTTTACCCTTAATCAAGAAAGACAGAATAAAG
Found at i:16776021 original size:39 final size:39
Alignment explanation
Indices: 16775971--16776533 Score: 341
Period size: 39 Copynumber: 14.4 Consensus size: 39
16775961 AAAGATTCTG
* * * *
16775971 ATCTTTTACCCCGAGCCTGGGGCAAATTA-CAGTCAACCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCA-TCATCCA
* * * * * * *
16776010 ATCTCTTACCCCGGGCCTAGGACAGATT-GCAGCTATCCC
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCATC-ATCCA
* * * *
16776049 ATCTTTTACCCCAAGCTTGGGGCAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCATCATCCA
* * *
16776088 ATCTCTTACCCCGAGTTTGGGGCAGATTA-CAGCCATCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCA-TCATCCA
* ** *
16776127 ATCTCTTACCCCGAGCCTAAGGCAGATTACCATCAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCATCATCCA
* * * * **
16776166 ATCTCTTACCTCGAGCTTGAGGCAGATT-GCAGCCATCTG
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCA-TCATCCA
** * * *
16776205 ATCTCTTACCTTGAGGTTGGGGCAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCATCATCCA
* * * * * *
16776244 ATCTTTTACCCCGAGCCTGGGGTATATCACCATCAACCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCATCATCCA
* * * *
16776283 ATCTCTTACCCCGAACTTGGGGCAGATT-GCAGCCATCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCA-TCATCCA
* * ** *
16776322 ATCTTTTACCCTGAGCTTGAAGCAGATCACCATCAAT-CA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCATC-ATCCA
* * ** * * * *
16776361 ATCTCTTACCCCAAGCTTGAGGTGGATTGCAACCATCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCATCATCCA
* * * * *
16776400 ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCATCATCCA
* * * * *
16776439 ATCTCTTACCCCGAGCTTGGAGCAGATT-GCAGCTATTCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCATC-ATCCA
* * * * * *
16776478 ATCTTTTACCCCGAGCCTGAGACAGATAACTATCAGT-CA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTACCATCA-TCCA
*
16776517 ATCTCTTACCCCAAGCT
1 ATCTCTTACCCCGAGCT
16776534 AAGGGCGAAT
Statistics
Matches: 388, Mismatches: 122, Indels: 28
0.72 0.23 0.05
Matches are distributed among these distances:
38 12 0.03
39 362 0.93
40 14 0.04
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCTTGGGGCAGATTACCATCATCCA
Found at i:16776518 original size:156 final size:156
Alignment explanation
Indices: 16776244--16776554 Score: 448
Period size: 156 Copynumber: 2.0 Consensus size: 156
16776234 CCATCAGCCA
* * * *
16776244 ATCTTTTACCCCGAGCCTGGGGTATATCACCATCAACCAATCTCTTACCCCGAACTTGGGGCAGA
1 ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAACTTGGAGCAGA
* * *
16776309 TTGCAGCCATCCGATCTTTTACCCTGAGCTTGAAGCAGATCACCATCAATCAATCTCTTACCCCA
66 TTGCAGCCATCCGATCTTTTACCCCGAGCCTGAAGCAGATAACCATCAATCAATCTCTTACCCCA
*
16776374 AGCTTGAGGTG-G-ATTGCAACCATCCG
131 AGC-TAAGG-GCGAATTGCAACCATCCG
* *
16776400 ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCTTGGAGCAGA
1 ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAACTTGGAGCAGA
* * * *
16776465 TTGCAGCTATTCGATCTTTTACCCCGAGCCTG-AGACAGATAACTATCAGTCAATCTCTTACCCC
66 TTGCAGCCATCCGATCTTTTACCCCGAGCCTGAAG-CAGATAACCATCAATCAATCTCTTACCCC
16776529 AAGCTAAGGGCGAATTGCAACCATCC
130 AAGCTAAGGGCGAATTGCAACCATCC
16776555 AATATCTTAC
Statistics
Matches: 138, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
154 1 0.01
155 7 0.05
156 130 0.94
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (156 bp):
ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAACTTGGAGCAGA
TTGCAGCCATCCGATCTTTTACCCCGAGCCTGAAGCAGATAACCATCAATCAATCTCTTACCCCA
AGCTAAGGGCGAATTGCAACCATCCG
Found at i:16777381 original size:11 final size:11
Alignment explanation
Indices: 16777365--16777389 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16777355 TTTTTCCTAT
16777365 CGATTTTCACA
1 CGATTTTCACA
16777376 CGATTTTCACA
1 CGATTTTCACA
16777387 CGA
1 CGA
16777390 AATTAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (11 bp):
CGATTTTCACA
Found at i:16777702 original size:7 final size:7
Alignment explanation
Indices: 16777692--16777717 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
16777682 AAAAAATGAA
16777692 AATAAAT
1 AATAAAT
16777699 AATAAAT
1 AATAAAT
16777706 AATAAAT
1 AATAAAT
16777713 AATAA
1 AATAA
16777718 GAAGATTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AATAAAT
Found at i:16782529 original size:57 final size:58
Alignment explanation
Indices: 16782468--16782577 Score: 168
Period size: 57 Copynumber: 1.9 Consensus size: 58
16782458 GTTTGGCAAC
* *
16782468 TAATGGCCGACACCAAAAAATATTAATAAAAAATATTTT-TTTTTGGTGTTTGACAGG
1 TAATGGCCGACACCAAAAAACATGAATAAAAAATATTTTCTTTTTGGTGTTTGACAGG
* * *
16782525 TAATGGTCGGCACCAAAAAACATGAATAAAAAATATTTTCTTTTTGGTTTTTG
1 TAATGGCCGACACCAAAAAACATGAATAAAAAATATTTTCTTTTTGGTGTTTG
16782578 TCTTATAGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 35 0.74
58 12 0.26
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (58 bp):
TAATGGCCGACACCAAAAAACATGAATAAAAAATATTTTCTTTTTGGTGTTTGACAGG
Found at i:16782852 original size:6 final size:6
Alignment explanation
Indices: 16782841--16782873 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
16782831 ATGAAATTGT
16782841 AATGAA AATGAA AATGAA AATGAA AATGAA AAT
1 AATGAA AATGAA AATGAA AATGAA AATGAA AAT
16782874 ATTTTAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (6 bp):
AATGAA
Found at i:16783410 original size:30 final size:30
Alignment explanation
Indices: 16783376--16783436 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
16783366 GTTTAATTAC
*
16783376 ATATTTTATATTTTAAAATAATATTGGGTT
1 ATATTATATATTTTAAAATAATATTGGGTT
16783406 ATATTATATATTTTAAAATAATATTGGGTT
1 ATATTATATATTTTAAAATAATATTGGGTT
16783436 A
1 A
16783437 CTTATCATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (30 bp):
ATATTATATATTTTAAAATAATATTGGGTT
Found at i:16785344 original size:656 final size:656
Alignment explanation
Indices: 16783448--16795334 Score: 22130
Period size: 656 Copynumber: 18.1 Consensus size: 656
16783438 TTATCATGTT
* * * *
16783448 GTTAATTATTATTGCATCACTCACATTATTATTAAATTTAAAATTTAATTTAATTTTATTATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
* * *
16783513 CAATTAAACTAGATTTTTTTTATAAAATTAGAATCAGCGTTAATGATTTTCAT-TTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16783577 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
*
16783642 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATTGTG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
*
16783707 TGATTGGATCACCACAAAACGTTTAAAATCCGTTGTAAAAAATATTTTGGTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
*
16783772 AAACGGGTTCGAGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
16783837 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
16783902 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
*
16783967 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAC
521 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
*
16784032 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCGCACC
586 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
16784097 CCGTAC
651 CCGTAC
16784103 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
16784168 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16784233 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
*
16784298 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTTATATGGT
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATC-TTTTTATATGGT
*
16784363 GTGATTGGATCACCACATAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
16784428 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
16784493 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
16784558 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
16784623 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
520 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
16784688 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
585 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
*
16784753 CCCATAC
650 CCCGTAC
16784760 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
* *
16784825 CAATTAAACTAGATTTTTTTTTATAAAATTAGAACTAGCTTTAATGATTTTCATCTTTTATAATA
66 CAATTAAACTAGA-TTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATA
* *
16784890 ATCCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTATCAAACAATATTTAAA
130 ATTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAA
*
16784955 AAT-AAAAGGGGGTATTTTAAATGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGT
195 AATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGT
*
16785019 GTGATTGGATAACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
*
16785084 AAAACGGGTTCGGGAGTCGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
*
16785149 ACCATATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
16785214 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
*
16785279 AATTTCTAAAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
520 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
* * *
16785344 TTGAAAGACATTTTGAAAGACTTTGAAGAGGACATTCGATCGCGTGAATTATATGAAAATCACAC
585 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
*
16785409 CCCGTGC
650 CCCGTAC
*
16785416 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTCATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16785481 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTTATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
*
16785546 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAGGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
*
16785611 ATAAAAAGGGGGTATTTTAAATGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
16785676 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
16785741 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
16785806 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
16785871 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
*
16785936 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAC
521 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
16786001 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
586 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
16786066 CCGTAC
651 CCGTAC
16786072 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
16786137 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16786202 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
**
16786267 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATTATG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
*
16786332 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGCTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
* *
16786397 AAACGGGTTCGGGAGTAGGTTACGTACGAGAAAAGATTAGCACTCTCACACGCCCAAAATTGGTA
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
16786462 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
* * *
16786527 CGATCTTTTAAAAACCTTGCATGATTTTTAAAAATCCTATTGGAGACAAATTGTGCGTGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
16786592 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
521 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
* *
16786657 TGCAGAACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
586 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
16786722 CCGTAC
651 CCGTAC
*
16786728 GTTAGTTATTATTGCATCTCTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
16786793 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16786858 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
* *
16786923 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACTAATCTTTTTTATATGGT
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATC-TTTTTATATGGT
*
16786988 GTGATTGGATCACCACATAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
*
16787053 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACATGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
16787118 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
16787183 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
16787248 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
520 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
*
16787313 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTAAATTATACGAAAATCACAC
585 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
16787378 CCCGTAC
650 CCCGTAC
16787385 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
16787450 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16787515 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
*
16787580 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTTATATGGT
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATC-TTTTTATATGGT
*
16787645 GTGATTGGATCACCACATAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
*
16787710 AAAACGGGTTCGGGAGTAGGTTACGTACGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
* *
16787775 TCCACATTGATTATTTTCGGGTCTTGATTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
*
16787840 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTGGAGAAAAATTGTGCGTGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
16787905 AATTTCTA-AAGGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAA
520 AATTTCTAGAA-GAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAA
16787969 ATTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACA
584 ATTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACA
16788034 CCCCGTAC
649 CCCCGTAC
16788042 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
16788107 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16788172 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
* *
16788237 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACTAATCTTTTTTATATGGT
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATC-TTTTTATATGGT
*
16788302 GTGATTGGATCACCACATAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
*
16788367 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACATGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
16788432 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
16788497 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
16788562 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
520 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
*
16788627 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTAAATTATACGAAAATCACAC
585 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
16788692 CCCGTAC
650 CCCGTAC
16788699 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
16788764 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16788829 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
*
16788894 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTTATATGGT
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATC-TTTTTATATGGT
*
16788959 GTGATTGGATCACCACATAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
*
16789024 AAAACGGGTTCGGGAGTAGGTTACGTACGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
* *
16789089 TCCACATTGATTATTTTCGGGTCTTGATTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
*
16789154 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTGGAGAAAAATTGTGCGTGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
16789219 AATTTCTA-AAGGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAA
520 AATTTCTAGAA-GAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAA
16789283 ATTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACA
584 ATTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACA
*
16789348 CCCAGTAC
649 CCCCGTAC
16789356 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16789421 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16789486 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
* **
16789551 ATAAAAAGGGGGTATTTTAGATTATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
16789616 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
16789681 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
*
16789746 CCACATTGATTATTTCCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
16789811 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
*
16789876 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAC
521 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
16789941 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
586 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
16790006 CCGTAC
651 CCGTAC
16790012 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
* * * * *
16790077 CAATTAAAATACATTTTTTTTATAAAATTAAAACAAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
* * *
16790142 TCCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAAATAAATAAGTCTCAAATAATATTTAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGG-AAAACAAATAAGTCTCAAACAATATTTAAA
*
16790207 AATAAAAAGGGGGTATTTTAAATGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGT
195 AATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGT
16790272 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
260 GTGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAG
* *
16790337 AAAACGGGTTTGGGAGTAGGTTACGTATGAGAGAAGATTAGCACCCTCACACGCCCAAAATTGGT
325 AAAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGT
*
16790402 ACCACATTGATTATTTTCGGATCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
390 ACCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAAT
16790467 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
455 ACGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCG
*
16790532 AATTTCTAGAAGAACTAAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
520 AATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
**
16790597 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGTTTGAATTATACGAAAATCACAC
585 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
16790662 CCCGTAC
650 CCCGTAC
16790669 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
16790734 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16790799 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
**
16790864 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATTATG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
* *
16790929 TGATTGGATCACCAAAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGCTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
16790994 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
16791059 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
*
16791124 CGATCTTTTAAAAACTTTGCATGATTTTTGAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
16791189 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
521 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
* *
16791254 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTTGATCGCGTGAATTATATGAAAATCACACC
586 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
*
16791319 CCGTGC
651 CCGTAC
*
16791325 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTCATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16791390 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
*
16791455 TTCAAAAAAACTGTCGAAACGTTTATTTTCGAGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
* **
16791520 ATAAAAAGGGGGTAATTTAAACGATCGAAAAAAATTAGAGTCACGACCAATCTTTTTATATGGTG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
16791585 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
* * * *
16791650 AAACGGGTTCGGGAGTAGGTTACGTACGAGAAAAGATTAACACCCTTACACGCCCAAAATTGGTT
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
* * *
16791715 TCACATTGATTATTTTCGAGTCTTGATTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
*
16791780 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTGGAGAAAAATTGTGCGTGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
16791845 ATTTCTA-AAGGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
521 ATTTCTAGAA-GAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
* * *
16791909 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTTGATCGCGTGAATTATATGAAAAGCACAC
585 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
*
16791974 CCCGTGC
650 CCCGTAC
*
16791981 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTCATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
* * *
16792046 CAATTAAACTAGATTTTCTTTATAAAATTAGAACCAGCTTTTATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
*
16792111 TTCAAAAAAACTGTCGAAACGTTTATTTTCGAGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
*
16792176 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTATATGGTG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
16792241 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
* * *
16792306 AAACGGGTTCGGGAGTAGGTTACGTACGTGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTT
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
*
16792371 CCACATTGATTATTTTCGGGTCTTGATTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
*
16792436 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTGGAGAAAAATTGTGCGTGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
16792501 ATTTCTA-AAGGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
521 ATTTCTAGAA-GAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAA
*
16792565 TTGAAGGACATTTTGAAAGACTTTAAAGAGGATATTCGATCGCGTGAATTATACGAAAATCACAC
585 TTGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACAC
16792630 CCCGTAC
650 CCCGTAC
16792637 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16792702 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16792767 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
*
16792832 ATAAAAAGGGGGTATTTTAAATGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
*
16792897 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGCTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
16792962 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
16793027 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
16793092 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
*
16793157 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAC
521 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
16793222 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
586 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
16793287 CCGTAC
651 CCGTAC
16793293 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16793358 CAATTAAACTAGATTTTTTTTATAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
*
16793423 TTCAAAAAAACTGTCGAAACGTTTATTTTCGAGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
*
16793488 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGAGAGTCACGACCAATCTTTTTATATGGTG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
* *
16793553 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTATAAAATATTTCGGTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
* *
16793618 AAACGGGTTCGGGAGTAGGTTACGTACGAGAAAATATTAGCACCCTCACACGCCCAAAATTGGTA
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
16793683 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
16793748 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
* *
16793813 ATTTCTAAAAGAATTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
521 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
* *
16793878 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCCCGTGAATTATATGAAAATCACACC
586 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
* *
16793943 TCGTGC
651 CCGTAC
* *
16793949 GTTAGTTATTATTGCATCACTCACATTATTCTTAAATTTAAAAATTAATTTAAATTTCATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
*
16794014 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTTATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
16794079 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
* * *
16794144 ATAAAAAGGGGGTATTTTAAATGATTGAAAAAAATGGTAGTCACGACCAATCTTTTTATATGGTG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
* * *
16794209 TGATTGGAGCAGCACAAAACGTTTAAAATCTGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
* *
16794274 AAACGGGTTCGGGAGTAGGTTACGTACGAGAAAAGATTAACACCCTCACACGCCCAAAATTGGTA
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
*
16794339 CCACATTGATTATTTTCGGGTCTTGATTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
16794404 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
* *
16794469 ATTTCTAGAAGAACTAAAAATCGTGCTCAACACATTAGGACACTATGTTCTCAAATTTTCGAAAT
521 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
*
16794534 TGAAGGACATTTTGAAAGACTGTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
586 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
16794599 CCGTAC
651 CCGTAC
*
16794605 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATACGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
* *
16794670 CAATTAAACTAGATTTTTTTTATAAAATTAGAACTAGCTTTAATGATTTTCATCTTTTATAATAA
66 CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
* * *
16794735 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGCAAAGCAAATAAGTCTCAAAAAATATTTAAAA
131 TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
*
16794800 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACAAATCTTTTTATATGGTG
196 ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
16794865 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
261 TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
16794930 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
326 AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
*
16794995 CCACATTGATTATTTCCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
391 CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
16795060 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
456 CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
*
16795125 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAC
521 ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
16795190 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
586 TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
16795255 CCGTAC
651 CCGTAC
16795261 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
1 GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
16795326 CAATTAAAC
66 CAATTAAAC
16795335 GCAGAGAATT
Statistics
Matches: 10952, Mismatches: 268, Indels: 23
0.97 0.02 0.00
Matches are distributed among these distances:
655 226 0.02
656 6863 0.63
657 3746 0.34
658 117 0.01
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (656 bp):
GTTAGTTATTATTGCATCACTCACATTATTATTAAATTTAAAAATTAATTTAAATTTAATATGCA
CAATTAAACTAGATTTTTTTTAGAAAATTAGAACCAGCTTTAATGATTTTCATCTTTTATAATAA
TTCAAAAAAACTGTCGAAACGTTTATTTTCGGGGAAAACAAATAAGTCTCAAACAATATTTAAAA
ATAAAAAGGGGGTATTTTAAACGATCGAAAAAAATGGGAGTCACGACCAATCTTTTTATATGGTG
TGATTGGATCACCACAAAACGTTTAAAATCCGTTTTAAAAAATATTTTGGTCTTCGAAATCCAGA
AAACGGGTTCGGGAGTAGGTTACGTATGAGAAAAGATTAGCACCCTCACACGCCCAAAATTGGTA
CCACATTGATTATTTTCGGGTCTTGGTTTGTTAAAACTTTGAAAACTAGAGTAAAACTTAAAATA
CGATCTTTTAAAAACTTTGCATGATTTTTAAAAATCCTATTAGAGAAAAATTGTGCGTGTTTCGA
ATTTCTAGAAGAACTGAAAATCGTGCTCAACACATTAGGGCACTATGTTCTCAAATTTTCGAAAT
TGAAGGACATTTTGAAAGACTTTAAAGAGGACATTCGATCGCGTGAATTATACGAAAATCACACC
CCGTAC
Found at i:16795825 original size:29 final size:29
Alignment explanation
Indices: 16795791--16795874 Score: 73
Period size: 30 Copynumber: 2.9 Consensus size: 29
16795781 AGGTTTAAGG
16795791 TCAAAAATGAAATTTTTGGACATCCAAGA
1 TCAAAAATGAAATTTTTGGACATCCAAGA
* * *
16795820 GT--AAAATGGCAATTTTTGGAAAGTTCAAGA
1 -TCAAAAAT-GAAATTTTTGGACA-TCCAAGA
* * *
16795850 TCAAAAATGGAATTTTCGAACATCC
1 TCAAAAATGAAATTTTTGGACATCC
16795875 GGGGGTAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 9
0.71 0.14 0.15
Matches are distributed among these distances:
28 5 0.12
29 15 0.36
30 17 0.40
31 5 0.12
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.29
Consensus pattern (29 bp):
TCAAAAATGAAATTTTTGGACATCCAAGA
Found at i:16795864 original size:30 final size:30
Alignment explanation
Indices: 16795790--16795865 Score: 86
Period size: 30 Copynumber: 2.6 Consensus size: 30
16795780 AAGGTTTAAG
* *
16795790 GTCAAAAATGAAATTTTTGGACATCCAAGA
1 GTCAAAAATGGAATTTTTGGAAATCCAAGA
*
16795820 GT--AAAATGGCAATTTTTGGAAAGTTCAAGA
1 GTCAAAAATGG-AATTTTTGGAAA-TCCAAGA
16795850 -TCAAAAATGGAATTTT
1 GTCAAAAATGGAATTTT
16795866 CGAACATCCG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
28 6 0.15
29 12 0.31
30 14 0.36
31 7 0.18
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.30
Consensus pattern (30 bp):
GTCAAAAATGGAATTTTTGGAAATCCAAGA
Found at i:16795864 original size:59 final size:59
Alignment explanation
Indices: 16795757--16795961 Score: 236
Period size: 59 Copynumber: 3.5 Consensus size: 59
16795747 TTGGACACTT
* * * * *
16795757 CGAGGGTAAAATAGTAA-TTTT-CAAAGGTTTAAGGTCAAAAATGAAATTTTTGGACATC
1 CGAGGGTAAAATGGTAATTTTTGGAAA-GTTCAAGATCAAAAATGAAATTTTTGAACATC
* * * * *
16795815 CAAGAGTAAAATGGCAATTTTTGGAAAGTTCAAGATCAAAAATGGAATTTTCGAACATC
1 CGAGGGTAAAATGGTAATTTTTGGAAAGTTCAAGATCAAAAATGAAATTTTTGAACATC
* * * ** *
16795874 CGGGGGTAAAATGGTAATTTTTGGAAGGATCGGGATCAAAAATCAAATTTTTGAACATC
1 CGAGGGTAAAATGGTAATTTTTGGAAAGTTCAAGATCAAAAATGAAATTTTTGAACATC
16795933 CGAGGGTAAAATGGTAA-TTTTGGAAAGTT
1 CGAGGGTAAAATGGTAATTTTTGGAAAGTT
16795962 TGGGGTCAAA
Statistics
Matches: 121, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
58 23 0.19
59 95 0.79
60 3 0.02
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (59 bp):
CGAGGGTAAAATGGTAATTTTTGGAAAGTTCAAGATCAAAAATGAAATTTTTGAACATC
Found at i:16795951 original size:29 final size:28
Alignment explanation
Indices: 16795853--16795953 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 28
16795843 TTCAAGATCA
*
16795853 AAAATGG-AATTTTCGAACATCCGGGGGT
1 AAAATGGTAATTTTTGAACATCC-GGGGT
* *
16795881 AAAATGGTAATTTTTGGAAGGAT-CGGGAT
1 AAAATGGTAATTTTT-GAA-CATCCGGGGT
**
16795910 CAAAAAT-CAAATTTTTGAACATCCGAGGGT
1 --AAAATGGTAATTTTTGAACATCCG-GGGT
16795940 AAAATGGTAATTTT
1 AAAATGGTAATTTT
16795954 GGAAAGTTTG
Statistics
Matches: 56, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
28 14 0.25
29 21 0.38
30 14 0.25
31 7 0.12
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.30
Consensus pattern (28 bp):
AAAATGGTAATTTTTGAACATCCGGGGT
Found at i:16795972 original size:29 final size:29
Alignment explanation
Indices: 16795936--16796133 Score: 158
Period size: 29 Copynumber: 6.8 Consensus size: 29
16795926 GAACATCCGA
16795936 GGGT-AAAATGGTAATTTTGGAAAGTTT-G
1 GGGTCAAAAT-GTAATTTTGGAAAGTTTAG
* * *
16795964 GGGTCAAAAAGGGAATTTTTTGAAA-TTTA-
1 GGGTC-AAAATGTAA-TTTTGGAAAGTTTAG
**
16795993 GGGTCAAAAATACAATTTTGGAAAGTTTAG
1 GGGTC-AAAATGTAATTTTGGAAAGTTTAG
*
16796023 GGG-CAAAAATGTAATTTTGGAATGTTT-G
1 GGGTC-AAAATGTAATTTTGGAAAGTTTAG
* * *
16796051 GGGTTAAAATGTGATTTTTGAAAAGTTTAG
1 GGGTCAAAATGT-AATTTTGGAAAGTTTAG
* *
16796081 GTGG-CAAAATATAATTTTTGGAAAGTTTAA
1 G-GGTCAAAATGTAA-TTTTGGAAAGTTTAG
* *
16796111 GGGTTAAAATGTAATTTTTGAAA
1 GGGTCAAAATGTAATTTTGGAAA
16796134 AGCTTGAGGC
Statistics
Matches: 136, Mismatches: 22, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
28 23 0.17
29 66 0.49
30 45 0.33
31 2 0.01
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.36
Consensus pattern (29 bp):
GGGTCAAAATGTAATTTTGGAAAGTTTAG
Found at i:16796098 original size:30 final size:29
Alignment explanation
Indices: 16795950--16796172 Score: 145
Period size: 30 Copynumber: 7.6 Consensus size: 29
16795940 AAAATGGTAA
*
16795950 TTTTGGAAAGTTT-GGGGTCAAAA-AGGGAAT
1 TTTTGGAAAGTTTAGGGG-CAAAATA--TAAT
* * *
16795980 TTTTTGAAA-TTTAGGGTCAAAA-ATACAA
1 TTTTGGAAAGTTTAGGGGCAAAATATA-AT
*
16796008 TTTTGGAAAGTTTAGGGGCAAAAATGTAA-
1 TTTTGGAAAGTTTAGGGGC-AAAATATAAT
* * * *
16796037 TTTTGGAATGTTT-GGGGTTAAAATGTGAT
1 TTTTGGAAAGTTTAGGGG-CAAAATATAAT
*
16796066 TTTTGAAAAGTTTAGGTGGCAAAATATAAT
1 TTTTGGAAAGTTTAGG-GGCAAAATATAAT
** *
16796096 TTTTGGAAAGTTTAAGGGTTAAAATGTAAT
1 TTTTGGAAAGTTT-AGGGGCAAAATATAAT
* * *
16796126 TTTTGAAAAGCTT-GAGGCCTAAAATATAAT
1 TTTTGGAAAGTTTAG-GGGC-AAAATATAAT
* *
16796156 TTTTGGACAGTTCAGGG
1 TTTTGGAAAGTTTAGGG
16796173 ATCTCTTGGG
Statistics
Matches: 152, Mismatches: 28, Indels: 26
0.74 0.14 0.13
Matches are distributed among these distances:
27 1 0.01
28 22 0.14
29 42 0.28
30 79 0.52
31 8 0.05
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (29 bp):
TTTTGGAAAGTTTAGGGGCAAAATATAAT
Found at i:16796133 original size:60 final size:59
Alignment explanation
Indices: 16795935--16796172 Score: 204
Period size: 58 Copynumber: 4.1 Consensus size: 59
16795925 TGAACATCCG
* *** *
16795935 AGGG-TAAAATGGTAA-TTTTGGAAAGTTT-GGGGTCAAAAAGGGAATTTTTTGAAA-TTT
1 AGGGTTAAAAT-GTAATTTTTGAAAAGTTTAGGGG-CAAAAATATAATTTTTGGAAAGTTT
* * * * * *
16795992 AGGGTCAAAA-ATACAATTTTGGAAAGTTTAGGGGCAAAAATGTAA-TTTTGGAATGTTT
1 AGGGTTAAAATGTA-ATTTTTGAAAAGTTTAGGGGCAAAAATATAATTTTTGGAAAGTTT
* *
16796050 GGGGTTAAAATGTGATTTTTGAAAAGTTTAGGTGGC-AAAATATAATTTTTGGAAAGTTT
1 AGGGTTAAAATGTAATTTTTGAAAAGTTTAGG-GGCAAAAATATAATTTTTGGAAAGTTT
* * * * *
16796109 AAGGGTTAAAATGTAATTTTTGAAAAGCTT-GAGGCCTAAAATATAATTTTTGGACAGTTC
1 -AGGGTTAAAATGTAATTTTTGAAAAGTTTAG-GGGCAAAAATATAATTTTTGGAAAGTTT
16796169 AGGG
1 AGGG
16796173 ATCTCTTGGG
Statistics
Matches: 150, Mismatches: 20, Indels: 20
0.79 0.11 0.11
Matches are distributed among these distances:
56 2 0.01
57 12 0.08
58 61 0.41
59 27 0.18
60 48 0.32
ACGTcount: A:0.36, C:0.04, G:0.25, T:0.35
Consensus pattern (59 bp):
AGGGTTAAAATGTAATTTTTGAAAAGTTTAGGGGCAAAAATATAATTTTTGGAAAGTTT
Found at i:16797993 original size:17 final size:16
Alignment explanation
Indices: 16797972--16798075 Score: 81
Period size: 17 Copynumber: 6.4 Consensus size: 16
16797962 CTTTTATTCT
*
16797972 TTTAAATTTATAATAAT
1 TTTAAATTTA-AATAAA
16797989 TTTAAATTTAAAAATAAA
1 TTTAAATTT--AAATAAA
*
16798007 TTTAAACTTAAATTAAA
1 TTTAAATTTAAA-TAAA
16798024 TTTAAA-TT---TAAA
1 TTTAAATTTAAATAAA
16798036 TTTAAATTTAAAATAAA
1 TTTAAATTT-AAATAAA
* * *
16798053 CTTAACCTTAAAATAAA
1 TTTAA-ATTTAAATAAA
16798070 TTTAAA
1 TTTAAA
16798076 AAATGGGTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
12 10 0.14
13 2 0.03
16 5 0.07
17 38 0.54
18 15 0.21
19 1 0.01
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (16 bp):
TTTAAATTTAAATAAA
Found at i:16797998 original size:6 final size:6
Alignment explanation
Indices: 16797972--16798047 Score: 86
Period size: 6 Copynumber: 13.0 Consensus size: 6
16797962 CTTTTATTCT
* ** *
16797972 TTTAAA TTTATAA --TAAT TTTAAA TTTAAA AATAAA TTTAAA CTTAAA
1 TTTAAA TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
16798019 -TTAAA TTTAAA TTTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
16798048 ATAAACTTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
4 1 0.02
5 7 0.12
6 49 0.83
7 2 0.03
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (6 bp):
TTTAAA
Found at i:16798012 original size:35 final size:35
Alignment explanation
Indices: 16797972--16798047 Score: 100
Period size: 35 Copynumber: 2.2 Consensus size: 35
16797962 CTTTTATTCT
* *
16797972 TTTAAATTTATAA-TAATTTTAAATTTAAAAATAAA
1 TTTAAACTTA-AATTAAATTTAAATTTAAAAATAAA
**
16798007 TTTAAACTTAAATTAAATTTAAATTTAAATTTAAA
1 TTTAAACTTAAATTAAATTTAAATTTAAAAATAAA
16798042 TTTAAA
1 TTTAAA
16798048 ATAAACTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 2 0.06
35 34 0.94
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (35 bp):
TTTAAACTTAAATTAAATTTAAATTTAAAAATAAA
Found at i:16798022 original size:29 final size:29
Alignment explanation
Indices: 16797990--16798057 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
16797980 TATAATAATT
16797990 TTAAATTTAAAAATAAATTTAAACTTAAA
1 TTAAATTTAAAAATAAATTTAAACTTAAA
** *
16798019 TTAAATTTAAATTTAAATTTAAATTTAAA
1 TTAAATTTAAAAATAAATTTAAACTTAAA
* *
16798048 ATAAACTTAA
1 TTAAATTTAA
16798058 CCTTAAAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (29 bp):
TTAAATTTAAAAATAAATTTAAACTTAAA
Found at i:16798075 original size:23 final size:23
Alignment explanation
Indices: 16798003--16798075 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
16797993 AATTTAAAAA
16798003 TAAATTTAAACTTAAATTAAATT
1 TAAATTTAAACTTAAATTAAATT
* *
16798026 TAAATTTAAATTTAAATTTAAA-A
1 TAAATTTAAACTTAAA-TTAAATT
* * *
16798049 TAAACTTAACCTTAAAATAAATT
1 TAAATTTAAACTTAAATTAAATT
16798072 TAAA
1 TAAA
16798076 AAATGGGTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
22 4 0.10
23 32 0.78
24 5 0.12
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAATTTAAACTTAAATTAAATT
Found at i:16798778 original size:172 final size:172
Alignment explanation
Indices: 16798479--16798843 Score: 518
Period size: 172 Copynumber: 2.1 Consensus size: 172
16798469 TCTGATTCAT
* * ** * *
16798479 TTCTCTGTAT-TCGTCAGGAAGGTAACTGCTTTATTGTTTCAAACTGCTTCTCATTATCTCATCA
1 TTCTCTGTATCTCATCAGGAAGCTAACAACTTTATTGCTTCAAACTGCTTCTCAATATCTCATCA
* *
16798543 GGAAGCTGGGGTTCGAAGATTTGCTCACTTCGAGCCTGGTTTCATTGATTTGGTCTACTTCTCAG
66 GGAAGCTGGGGTTCGAAGATTTGCTCACTTCGAGCCTGGCTTCATTGATTTGGTCTACTTCTCAA
** *
16798608 TATCTCATCAGGAAGATGACTGCATCACTTGTTTCAATCTGC
131 TATCTCATCAGGAAGATGACCACATCACTTGTTTCAATCCGC
* *
16798650 TTCTCTGTATCTCATCAGGAAGCTAACAATTTTATTGCTTC-GACTTGCTTCTCAATATCTCATC
1 TTCTCTGTATCTCATCAGGAAGCTAACAACTTTATTGCTTCAAAC-TGCTTCTCAATATCTCATC
* * * * * * *
16798714 AGGAAGTTGGGGTTTGAATATTTTCTCACTTTGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCA
65 AGGAAGCTGGGGTTCGAAGATTTGCTCACTTCGAGCCTGGCTTCATTGATTTGGTCTACTTCTCA
16798779 ATATCTCATCAGGAAGATGACCACATCACTTGTTTCAATCCGC
130 ATATCTCATCAGGAAGATGACCACATCACTTGTTTCAATCCGC
*
16798822 TTCTCTGTATCTCATTAGGAAG
1 TTCTCTGTATCTCATCAGGAAG
16798844 ACGAATTTGG
Statistics
Matches: 171, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
171 12 0.07
172 159 0.93
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (172 bp):
TTCTCTGTATCTCATCAGGAAGCTAACAACTTTATTGCTTCAAACTGCTTCTCAATATCTCATCA
GGAAGCTGGGGTTCGAAGATTTGCTCACTTCGAGCCTGGCTTCATTGATTTGGTCTACTTCTCAA
TATCTCATCAGGAAGATGACCACATCACTTGTTTCAATCCGC
Found at i:16799017 original size:209 final size:209
Alignment explanation
Indices: 16798649--16799088 Score: 754
Period size: 209 Copynumber: 2.1 Consensus size: 209
16798639 TTTCAATCTG
* *
16798649 CTTCTCTGTATCTCATCAGGAAGCTAACAATTTTATTGCTTCGACTTGCTTCTCAATATCTCATC
1 CTTCTCAGTATCTCATCAGGAAGCTAACAATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
* * * *
16798714 AGGAAGTTGGGGTTTGAATATTTTCTCACTTTGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCA
66 AGGAAGCTAGGGTTTGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCA
* *
16798779 ATATCTCATCAGGAAGATGACCACATCACTTGTTTCAATCCGCTTCTCTGTATCTCATTAGGAAG
131 ATATCTCATCAGGAAAATGACCACATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAG
16798844 ACGAATTTGGTCCA
196 ACGAATTTGGTCCA
* *
16798858 CTTCTTAGTATCTCATCAGGAAGCTAACAATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
1 CTTCTCAGTATCTCATCAGGAAGCTAACAATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
16798923 AGGAAGCTAGGGTTTGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCA
66 AGGAAGCTAGGGTTTGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCA
* ** *
16798988 GTATCTCATCAGGAAAATGACTGCATCACTTGTTTCAATCCGCTTCTCTGTATTTCATCAGGAAG
131 ATATCTCATCAGGAAAATGACCACATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAG
16799053 ACGAATTTGGTCCA
196 ACGAATTTGGTCCA
16799067 CTTCTCAGTATCTCATCAGGAA
1 CTTCTCAGTATCTCATCAGGAA
16799089 AATGACTGCA
Statistics
Matches: 216, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
209 216 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.37
Consensus pattern (209 bp):
CTTCTCAGTATCTCATCAGGAAGCTAACAATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
AGGAAGCTAGGGTTTGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCA
ATATCTCATCAGGAAAATGACCACATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAG
ACGAATTTGGTCCA
Found at i:16799083 original size:37 final size:37
Alignment explanation
Indices: 16799030--16799167 Score: 105
Period size: 37 Copynumber: 3.4 Consensus size: 37
16799020 TTTCAATCCG
* *
16799030 CTTCTCTGTATTTCATCAGGAAGACGAATTTGGTCCA
1 CTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCA
** *
16799067 CTTCTCAGTATCTCATCAGGAAAATGACTGCATCACTTGTTTCAATCCG
1 CTTCTCAGTATCTCATCAGG--AA-GAC-G-A--A----TTT-GGTCCA
* *
16799116 CTTCTCTGTATTTCATCAGGAAGACGAATTTGGTCCA
1 CTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCA
16799153 CTTCTCAGTATCTCA
1 CTTCTCAGTATCTCA
16799168 GTATTATTTG
Statistics
Matches: 77, Mismatches: 12, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
37 34 0.44
38 3 0.04
39 2 0.03
40 3 0.04
41 1 0.01
42 2 0.03
44 2 0.03
45 1 0.01
46 3 0.04
47 2 0.03
48 3 0.04
49 21 0.27
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.35
Consensus pattern (37 bp):
CTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCA
Found at i:16799116 original size:86 final size:86
Alignment explanation
Indices: 16798971--16799167 Score: 376
Period size: 86 Copynumber: 2.3 Consensus size: 86
16798961 GGCTTCATTG
**
16798971 ATTTGGTCTTCTTCTCAGTATCTCATCAGGAAAATGACTGCATCACTTGTTTCAATCCGCTTCTC
1 ATTTGGTCCACTTCTCAGTATCTCATCAGGAAAATGACTGCATCACTTGTTTCAATCCGCTTCTC
16799036 TGTATTTCATCAGGAAGACGA
66 TGTATTTCATCAGGAAGACGA
16799057 ATTTGGTCCACTTCTCAGTATCTCATCAGGAAAATGACTGCATCACTTGTTTCAATCCGCTTCTC
1 ATTTGGTCCACTTCTCAGTATCTCATCAGGAAAATGACTGCATCACTTGTTTCAATCCGCTTCTC
16799122 TGTATTTCATCAGGAAGACGA
66 TGTATTTCATCAGGAAGACGA
16799143 ATTTGGTCCACTTCTCAGTATCTCA
1 ATTTGGTCCACTTCTCAGTATCTCA
16799168 GTATTATTTG
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 109 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (86 bp):
ATTTGGTCCACTTCTCAGTATCTCATCAGGAAAATGACTGCATCACTTGTTTCAATCCGCTTCTC
TGTATTTCATCAGGAAGACGA
Found at i:16799149 original size:381 final size:374
Alignment explanation
Indices: 16798381--16799101 Score: 871
Period size: 381 Copynumber: 1.9 Consensus size: 374
16798371 TGGTGTCATT
* ** **
16798381 GATTTGGTCTACTTCTCAGTATCTCATCAGGAAGTTGACCGTATCACATGTTTTGATCCACTTCT
1 GATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCACATCACATGTTTCAATCCACTTCT
* * * * * * **
16798446 GTGTGTCTCATCAGGAAGACGAATCTGATTCATTTCTCTGTATTCGTCAGGAAGGTAACTGCTTT
66 CTGTATCTCATCAGGAAGACGAATCTGATCCACTTCTCTGTATTCATCAGGAAGCTAACAACTTT
* * *
16798511 ATTGTTTCAAACTGCTTCTCATTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTCGA
131 ATTGCTTCAAACTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACTTCGA
* *
16798576 GCCTGGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACTGCATCACTTGTT
196 GCCTGGCTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAGGAAAATGACTGCATCACTTGTT
* * *
16798641 TCAATCTGCTTCTCTGTATCTCATCAGGAAGCTAACAATTTTATTGCTTCGACTTGCTTCTCAAT
261 TCAATCCGCTTCTCTGTATCTCATCAGGAAG--AACAA--TTATTGCGTC-AC-TACTTCTCAAT
** * ** * * * **
16798706 ATCTCATCAGGAAGTTGGGGTTTGAATATTTTCTCACTTTGAGCTTGGCTTCATT
320 ATCTCATCAGGAAAATGCGGCATCAATATTTTCTCACTTTCAGCTTGGCATCAAC
* * * *
16798761 GATTTGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCACATCACTTGTTTCAATCCGCTTCT
1 GATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCACATCACATGTTTCAATCCACTTCT
* * * *
16798826 CTGTATCTCATTAGGAAGACGAATTTGGTCCACTTCT-TAGTATCTCATCAGGAAGCTAACAATT
66 CTGTATCTCATCAGGAAGACGAATCTGATCCACTTCTCT-GTAT-TCATCAGGAAGCTAACAACT
* * * *
16798890 TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTTGAAGATTTGCTCACTTT
129 TTATTGCTTCAAACTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACTTC
* *
16798955 GAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAAATGACTGCATCACTTG
194 GAGCCTGGCTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAGGAAAATGACTGCATCACTTG
* *
16799020 TTTCAATCCGCTTCTCTGTATTTCATCAGGAAG-ACGAA-T-TTG-GTC-C-ACTTCTCAGTATC
259 TTTCAATCCGCTTCTCTGTATCTCATCAGGAAGAAC-AATTATTGCGTCACTACTTCTCAATATC
*
16799079 TCATCAGGAAAATGACTGCATCA
323 TCATCAGGAAAATG-CGGCATCA
16799102 CTTGTTTCAA
Statistics
Matches: 293, Mismatches: 44, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
370 23 0.08
371 3 0.01
372 1 0.00
374 2 0.01
375 3 0.01
376 1 0.00
378 2 0.01
379 3 0.01
380 90 0.31
381 165 0.56
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (374 bp):
GATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCACATCACATGTTTCAATCCACTTCT
CTGTATCTCATCAGGAAGACGAATCTGATCCACTTCTCTGTATTCATCAGGAAGCTAACAACTTT
ATTGCTTCAAACTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACTTCGA
GCCTGGCTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAGGAAAATGACTGCATCACTTGTT
TCAATCCGCTTCTCTGTATCTCATCAGGAAGAACAATTATTGCGTCACTACTTCTCAATATCTCA
TCAGGAAAATGCGGCATCAATATTTTCTCACTTTCAGCTTGGCATCAAC
Found at i:16803474 original size:16 final size:17
Alignment explanation
Indices: 16803443--16803480 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
16803433 ATTAAGTTGG
*
16803443 ATTAAGAATGAAAGAATA
1 ATTAAGAA-GAAAGAAAA
16803461 ATTAAGAA-AAAGAAAA
1 ATTAAGAAGAAAGAAAA
16803477 ATTA
1 ATTA
16803481 TCATATAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 11 0.58
18 8 0.42
ACGTcount: A:0.66, C:0.00, G:0.13, T:0.21
Consensus pattern (17 bp):
ATTAAGAAGAAAGAAAA
Found at i:16811251 original size:29 final size:29
Alignment explanation
Indices: 16810965--16811251 Score: 110
Period size: 29 Copynumber: 9.8 Consensus size: 29
16810955 TTTTGGATGC
*
16810965 TCGAGGGTAAAATGGTAA-TTTTGAACACT
1 TCGAGGGTAAAATGGTAATTTTTGGACA-T
* * * ** **
16810994 TCGAGTGCAAAATAGTAATTTTCAGAGGT
1 TCGAGGGTAAAATGGTAATTTTTGGACAT
*
16811023 TCG-GGGTCAAAAATGG-AATTTTTAGACA-
1 TCGAGGGT--AAAATGGTAATTTTTGGACAT
* * * *
16811051 TCCAGGAGTAAAATGATAATTTTGGGAAAGT
1 TCGAGG-GTAAAATGGTAATTTTTGGACA-T
** * *
16811082 TCG-GTATCAAAAAT-GAAATTTTTTGACAT
1 TCGAGGGT--AAAATGGTAATTTTTGGACAT
* * *
16811111 CCGGGGGTAAAATGGTAATTTTTGGAAAGT
1 TCGAGGGTAAAATGGTAATTTTTGGACA-T
** *
16811141 TCGA-AATCAAAAATGG-AATTTTCGGACAT
1 TCGAGGGT--AAAATGGTAATTTTTGGACAT
* *
16811170 CCGAGGGTAAAGTGGTAATTTTTGGA-AGGT
1 TCGAGGGTAAAATGGTAATTTTTGGACA--T
* * * *
16811200 TCG-GGATCAAAAAT-GAAAGTTTTGGATAT
1 TCGAGGGT--AAAATGGTAATTTTTGGACAT
16811229 TCGAGGGTAAAATGGTAATTTTT
1 TCGAGGGTAAAATGGTAATTTTT
16811252 AGAAAGTTTG
Statistics
Matches: 182, Mismatches: 52, Indels: 48
0.65 0.18 0.17
Matches are distributed among these distances:
28 27 0.15
29 82 0.45
30 54 0.30
31 19 0.10
ACGTcount: A:0.35, C:0.09, G:0.25, T:0.31
Consensus pattern (29 bp):
TCGAGGGTAAAATGGTAATTTTTGGACAT
Found at i:16811265 original size:29 final size:28
Alignment explanation
Indices: 16811233--16811466 Score: 141
Period size: 30 Copynumber: 8.0 Consensus size: 28
16811223 GGATATTCGA
16811233 GGGTAAAATGGTAATTTTTAGAAAGTTTG
1 GGGTAAAAT-GTAATTTTTAGAAAGTTTG
* * * *
16811262 GGGTTAATAAAGGAATTTTTGGAAA-TTTA
1 GGG-TAA-AATGTAATTTTTAGAAAGTTTG
* * * *
16811291 AGGTCAAAGATGCAA-TTTTGGAAAGTTCGG
1 GGGT-AAA-ATGTAATTTTTAGAAAGTT-TG
* *
16811321 GGGTAAAATGTAATTTTTTGATAGTTTG
1 GGGTAAAATGTAATTTTTAGAAAGTTTG
* * *
16811349 AGGTTAAAATGTGATTTTTAAAAAGTTTAG
1 -GGGTAAAATGTAATTTTTAGAAAGTTT-G
* * * *
16811379 GGTTTGAAATGTGATTTTTAAAAAGTTTAG
1 GG-GTAAAATGTAATTTTTAGAAAGTTT-G
* *
16811409 GGTTTAAAATATAATTTTTAGAAAGTTTAAG
1 GG-GTAAAATGTAATTTTTAGAAAGTTT--G
*
16811440 GGTTAAAATGTAATTTTTTAG-AAGTTT
1 GGGTAAAATGTAA-TTTTTAGAAAGTTT
16811467 TAGGGCTTAA
Statistics
Matches: 168, Mismatches: 25, Indels: 23
0.78 0.12 0.11
Matches are distributed among these distances:
28 17 0.10
29 53 0.32
30 85 0.51
31 13 0.08
ACGTcount: A:0.35, C:0.01, G:0.23, T:0.40
Consensus pattern (28 bp):
GGGTAAAATGTAATTTTTAGAAAGTTTG
Found at i:16811277 original size:118 final size:118
Alignment explanation
Indices: 16810983--16811280 Score: 332
Period size: 118 Copynumber: 2.5 Consensus size: 118
16810973 AAAATGGTAA
* * * * * * *
16810983 TTTTGAACACTTCGAGTGCAAAATAGTAATTTTCAG-AGGTTCGGGGTCAAAAATGGAATTTTTA
1 TTTTGGACA-TTCGAGGGTAAAATGGTAATTTTTAGAAAGTTCGGGGTCAAAAATGGAATTTTCA
* *
16811047 GACATCCAGGAGTAAAATGATAATTTTGGGAAAGTTCGGTATCAAAAATGAAAT
65 GACATCCAGGAGTAAAATGATAATTTTGGGAAAGTTCGGGATCAAAAATGAAAG
* * * * *** *
16811101 TTTTTGACATCCGGGGGTAAAATGGTAATTTTTGGAAAGTTCGAAATCAAAAATGGAATTTTCGG
1 TTTTGGACATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTCGGGGTCAAAAATGGAATTTTCAG
* * * *
16811166 ACATCCGAGG-GTAAAGTGGTAATTTTTGGAAGGTTCGGGATCAAAAATGAAAG
66 ACATCC-AGGAGTAAAATGATAATTTTGGGAAAGTTCGGGATCAAAAATGAAAG
* * *
16811219 TTTTGGATATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTTGGGGTTAATAAA-GGAATTTT
1 TTTTGGACATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTCGGGGTCAA-AAATGGAATTTT
16811281 TGGAAATTTA
Statistics
Matches: 146, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
117 19 0.13
118 121 0.83
119 6 0.04
ACGTcount: A:0.35, C:0.08, G:0.25, T:0.32
Consensus pattern (118 bp):
TTTTGGACATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTCGGGGTCAAAAATGGAATTTTCAG
ACATCCAGGAGTAAAATGATAATTTTGGGAAAGTTCGGGATCAAAAATGAAAG
Found at i:16811282 original size:59 final size:59
Alignment explanation
Indices: 16811021--16811284 Score: 307
Period size: 59 Copynumber: 4.5 Consensus size: 59
16811011 ATTTTCAGAG
* * * *
16811021 GTTCGGGGTCAAAAATGGAATTTTTAGACATCC-AGGAGTAAAATGATAATTTTGGGAAA
1 GTTCGGGATCAAAAATGGAATTTTTGGACATCCGAGG-GTAAAATGGTAATTTTTGGAAA
* * * *
16811080 GTTCGGTATCAAAAATGAAATTTTTTGACATCCGGGGGTAAAATGGTAATTTTTGGAAA
1 GTTCGGGATCAAAAATGGAATTTTTGGACATCCGAGGGTAAAATGGTAATTTTTGGAAA
** * * *
16811139 GTTCGAAATCAAAAATGGAATTTTCGGACATCCGAGGGTAAAGTGGTAATTTTTGGAAG
1 GTTCGGGATCAAAAATGGAATTTTTGGACATCCGAGGGTAAAATGGTAATTTTTGGAAA
* * * * *
16811198 GTTCGGGATCAAAAATGAAAGTTTTGGATATTCGAGGGTAAAATGGTAATTTTTAGAAA
1 GTTCGGGATCAAAAATGGAATTTTTGGACATCCGAGGGTAAAATGGTAATTTTTGGAAA
* * *
16811257 GTTTGGGGTTAATAAA-GGAATTTTTGGA
1 GTTCGGGATCAA-AAATGGAATTTTTGGA
16811285 AATTTAAGGT
Statistics
Matches: 173, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
59 168 0.97
60 5 0.03
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (59 bp):
GTTCGGGATCAAAAATGGAATTTTTGGACATCCGAGGGTAAAATGGTAATTTTTGGAAA
Found at i:16811308 original size:118 final size:118
Alignment explanation
Indices: 16810993--16811382 Score: 294
Period size: 118 Copynumber: 3.3 Consensus size: 118
16810983 TTTTGAACAC
* * * * * * * ** * *
16810993 TTCGAGTGCAAAATAGTAATTTTCAG-AGGTTCGGGGTCAAAAATGGAATTTTTAGACATCC-AG
1 TTCGAGGGTAAAATGGTAATTTTTAGAAAGTTTGGGGTTAAAAATGGAATTTTCGGAAATCCGAA
* ** * * *
16811056 GAGTAAAATGATAATTTTGGGAAAGTTCGGTATCAAAAATGAAATTTTTTGACA
66 G-GTAAAGTGGCAATTTTTGGAAAGTTCGGGATCAAAAATGAAATTTTTTGATA
* * * * *** * * *
16811110 TCCGGGGGTAAAATGGTAATTTTTGGAAAGTTCGAAATCAAAAATGGAATTTTCGGACATCCGAG
1 TTCGAGGGTAAAATGGTAATTTTTAGAAAGTTTGGGGTTAAAAATGGAATTTTCGGAAATCCGAA
* * * *
16811175 GGTAAAGTGGTAATTTTTGGAAGGTTCGGGATCAAAAATGAAAGTTTTGGATA
66 GGTAAAGTGGCAATTTTTGGAAAGTTCGGGATCAAAAATGAAATTTTTTGATA
* **
16811228 TTCGAGGGTAAAATGGTAATTTTTAGAAAGTTTGGGGTTAATAAA-GGAATTTTTGGAAAT-TTA
1 TTCGAGGGTAAAATGGTAATTTTTAGAAAGTTTGGGGTTAA-AAATGGAATTTTCGGAAATCCGA
* *
16811291 AGGTCAAAGAT-GCAA-TTTTGGAAAGTTCGGGGGT--AAAATGTAATTTTTTGATA
65 AGGT-AAAG-TGGCAATTTTTGGAAAGTTC-GGGATCAAAAATGAAATTTTTTGATA
* * * * *
16811344 GTTTGAGGTTAAAAT-GTGATTTTTAAAAAGTTTAGGGTT
1 -TTCGAGGGTAAAATGGTAATTTTTAGAAAGTTTGGGGTT
16811383 TGAAATGTGA
Statistics
Matches: 221, Mismatches: 45, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
116 37 0.17
117 47 0.21
118 130 0.59
119 7 0.03
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.34
Consensus pattern (118 bp):
TTCGAGGGTAAAATGGTAATTTTTAGAAAGTTTGGGGTTAAAAATGGAATTTTCGGAAATCCGAA
GGTAAAGTGGCAATTTTTGGAAAGTTCGGGATCAAAAATGAAATTTTTTGATA
Found at i:16811391 original size:30 final size:30
Alignment explanation
Indices: 16811352--16811487 Score: 159
Period size: 30 Copynumber: 4.5 Consensus size: 30
16811342 TAGTTTGAGG
16811352 TTAAAATGTGATTTTTAAAAAGTTTAGGGT
1 TTAAAATGTGATTTTTAAAAAGTTTAGGGT
*
16811382 TTGAAATGTGATTTTTAAAAAGTTTAGGGT
1 TTAAAATGTGATTTTTAAAAAGTTTAGGGT
* * *
16811412 TTAAAATATAATTTTTAGAAAGTTTAAGGG-
1 TTAAAATGTGATTTTTAAAAAGTTT-AGGGT
* * * *
16811442 TTAAAATGTAATTTTTTAGAAGTTTTAGGGC
1 TTAAAATGTGATTTTTAAAAAG-TTTAGGGT
*
16811473 TT-AAATATGATTTTT
1 TTAAAATGTGATTTTT
16811488 GGACAGTTCA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
30 83 0.90
31 9 0.10
ACGTcount: A:0.36, C:0.01, G:0.18, T:0.45
Consensus pattern (30 bp):
TTAAAATGTGATTTTTAAAAAGTTTAGGGT
Found at i:16811434 original size:60 final size:61
Alignment explanation
Indices: 16811324--16811487 Score: 176
Period size: 60 Copynumber: 2.8 Consensus size: 61
16811314 AGTTCGGGGG
** * * *
16811324 TAAAATGTAATTTTTTGATAGTTTGA-GG-TTAAAATGTGATTTTTAAAAAGTTT-AGGGTT
1 TAAAATGTAATTTTTAAAAAGTTTTAGGGCTTAAAATATGATTTTTAAAAAGTTTAAGGG-T
* * * * *
16811383 TGAAATGTGATTTTTAAAAAG-TTTAGGGTTTAAAATATAATTTTTAGAAAGTTTAAGGGT
1 TAAAATGTAATTTTTAAAAAGTTTTAGGGCTTAAAATATGATTTTTAAAAAGTTTAAGGGT
* *
16811443 TAAAATGTAATTTTTTAGAAGTTTTAGGGCTT-AAATATGATTTTT
1 TAAAATGTAATTTTTAAAAAGTTTTAGGGCTTAAAATATGATTTTT
16811488 GGACAGTTCA
Statistics
Matches: 86, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
58 3 0.03
59 18 0.21
60 52 0.60
61 13 0.15
ACGTcount: A:0.35, C:0.01, G:0.19, T:0.45
Consensus pattern (61 bp):
TAAAATGTAATTTTTAAAAAGTTTTAGGGCTTAAAATATGATTTTTAAAAAGTTTAAGGGT
Found at i:16812976 original size:6 final size:6
Alignment explanation
Indices: 16812950--16813036 Score: 83
Period size: 6 Copynumber: 15.0 Consensus size: 6
16812940 CTTTTATTCT
* ** *
16812950 TTTAAA TTTAGAA --TAAT TTTAAA TTTAAA AATAAA TTTAAA CTTAAA
1 TTTAAA TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
**
16812997 -TTAAA TTTAAA TTTAAA -ACAAA TTTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
16813037 ATAAACTTAA
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
4 1 0.02
5 10 0.15
6 52 0.80
7 2 0.03
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (6 bp):
TTTAAA
Found at i:16813023 original size:23 final size:23
Alignment explanation
Indices: 16812970--16813046 Score: 86
Period size: 23 Copynumber: 3.3 Consensus size: 23
16812960 GAATAATTTT
**
16812970 AAATTTAAAAATAAATTT-AAAC
1 AAATTTAAATTTAAATTTAAAAC
16812992 TTAAA-TTAAATTTAAATTTAAAAC
1 --AAATTTAAATTTAAATTTAAAAC
*
16813016 AAATTTAAATTTAAATTTAAAAT
1 AAATTTAAATTTAAATTTAAAAC
*
16813039 AAACTTAA
1 AAATTTAA
16813047 TCTTAAAATA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
22 3 0.06
23 37 0.79
24 7 0.15
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (23 bp):
AAATTTAAATTTAAATTTAAAAC
Found at i:16813046 original size:17 final size:17
Alignment explanation
Indices: 16812950--16813030 Score: 108
Period size: 17 Copynumber: 4.7 Consensus size: 17
16812940 CTTTTATTCT
* *
16812950 TTTAAATTTAGAATAAT
1 TTTAAATTTAAAATAAA
16812967 TTTAAATTTAAAAATAAA
1 TTTAAATTT-AAAATAAA
* *
16812985 TTTAAACTTAAATTAAA
1 TTTAAATTTAAAATAAA
*
16813002 TTTAAATTTAAAACAAA
1 TTTAAATTTAAAATAAA
16813019 TTTAAATTTAAA
1 TTTAAATTTAAA
16813031 TTTAAAATAA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
17 42 0.75
18 14 0.25
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:16813053 original size:23 final size:22
Alignment explanation
Indices: 16812981--16813046 Score: 87
Period size: 23 Copynumber: 2.9 Consensus size: 22
16812971 AATTTAAAAA
*
16812981 TAAATTTAAACTTAAATTAAATT
1 TAAATTTAAA-ATAAATTAAATT
*
16813004 TAAATTTAAAACAAATTTAAATT
1 TAAATTTAAAATAAA-TTAAATT
16813027 TAAATTTAAAATAAACTTAA
1 TAAATTTAAAATAAA-TTAA
16813047 TCTTAAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
22 3 0.08
23 35 0.92
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
TAAATTTAAAATAAATTAAATT
Found at i:16813725 original size:209 final size:208
Alignment explanation
Indices: 16813359--16813987 Score: 979
Period size: 209 Copynumber: 3.0 Consensus size: 208
16813349 CTTCAGTGGT
* * * * *
16813359 TTGGTTTCATTGATTTGATCTACTTCTCAGTATCTCATCAGGAAGATAACCGCATCACTTGTTTC
1 TTGGCTTCATTGATTTGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCGCATCACTTGTTTC
*
16813424 AATCCGCTTCTCTGTATCTCATCAGGAAGATGAAGTTGGTCCACTTCTCAGTATCTCATCAGGAA
66 AATCCGCTTCTCTGTATCTCATCAGGAAGACGAA-TTGGTCCACTTCTCAGTATCTCATCAGGAA
*
16813489 GCTAACCATTTTATTTCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGGTTCGAAGATT
130 GCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGGTTCGAAGATT
16813554 TGCTCACTTTGAGC
195 TGCTCACTTTGAGC
* *
16813568 TTGGCTTCATTGATTTGGTCTTCTTCTCAATATCTGATCAAGAAGATGACCGCATCACTTGTTTC
1 TTGGCTTCATTGATTTGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCGCATCACTTGTTTC
* * *
16813633 AATCCGCTTCTCTGTATCTCATTAGGAAGACGGATCTGGTCCACTTCTCAATATCTCATCAGGAA
66 AATCCGCTTCTCTGTATCTCATCAGGAAGACGAAT-TGGTCCACTTCTCAGTATCTCATCAGGAA
* ** *
16813698 GCTAACAATTTTATTGCTTATACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGGTTTGAAGATT
130 GCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGGTTCGAAGATT
16813763 TGCTCACTTTGAGC
195 TGCTCACTTTGAGC
* * *
16813777 TTGGCTTCATTGATTTGGTCTTCTTCTTATTATCTCATCAGGAAGATGACTGCATCACTTGTTTC
1 TTGGCTTCATTGATTTGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCGCATCACTTGTTTC
* * * * * *
16813842 AATCCGCTTCTCTGTATTTTATCAAGAAAACGAATTTGGTCCACTTCTCAGTATCTCATGAGAAA
66 AATCCGCTTCTCTGTATCTCATCAGGAAGACGAA-TTGGTCCACTTCTCAGTATCTCATCAGGAA
* * *
16813907 GCTAACCATTTTATTGCTTCGATCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATT
130 GCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGGTTCGAAGATT
16813972 TGCTCACTTTGAGC
195 TGCTCACTTTGAGC
16813986 TT
1 TT
16813988 TAAGTTGGTA
Statistics
Matches: 381, Mismatches: 37, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
208 1 0.00
209 379 0.99
210 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (208 bp):
TTGGCTTCATTGATTTGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCGCATCACTTGTTTC
AATCCGCTTCTCTGTATCTCATCAGGAAGACGAATTGGTCCACTTCTCAGTATCTCATCAGGAAG
CTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGGTTCGAAGATTT
GCTCACTTTGAGC
Found at i:16816198 original size:3 final size:3
Alignment explanation
Indices: 16816190--16816214 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
16816180 GGTCATCCCT
16816190 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
16816215 GCCTCAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:16818599 original size:16 final size:17
Alignment explanation
Indices: 16818568--16818604 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
16818558 ATTAAGTTGG
16818568 ATTAAGAATGAAAGAAAA
1 ATTAAGAA-GAAAGAAAA
16818586 ATTAAGAA-AAAGAAAA
1 ATTAAGAAGAAAGAAAA
16818602 ATT
1 ATT
16818605 GTCATATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.58
18 8 0.42
ACGTcount: A:0.68, C:0.00, G:0.14, T:0.19
Consensus pattern (17 bp):
ATTAAGAAGAAAGAAAA
Found at i:16826109 original size:58 final size:59
Alignment explanation
Indices: 16826028--16826296 Score: 242
Period size: 59 Copynumber: 4.6 Consensus size: 59
16826018 GTAAAACTGT
* * * * * * *
16826028 AATTTTT-GACACTTCGAGGGTAAAATAGTAATTTACAG-AGGTTTGGGGTCAAAAATGG
1 AATTTTTGGACA-TCCGAGGGTAAAATGGTAATTTACAGAAAGTTCGAGATCAAAAATGA
* ***
16826086 AATTTTTGGACATCCGAGAGTAAAATGGTAATTTTGTGAAAGTTCGAGATCAAAAATGA
1 AATTTTTGGACATCCGAGGGTAAAATGGTAATTTACAGAAAGTTCGAGATCAAAAATGA
** *
16826145 AATTTTTGGACATCCGAGGGTAAAATGGTAATGTT-TGGAAAGTTC-AGGATTAAAAATGA
1 AATTTTTGGACATCCGAGGGTAAAATGGTAAT-TTACAGAAAGTTCGA-GATCAAAAATGA
* * * * *** *
16826204 AATTTTTAGACATTCAAGAGTAAAATGGTAATTTTTGGAAAGTTCGAGATCAAAAATGG
1 AATTTTTGGACATCCGAGGGTAAAATGGTAATTTACAGAAAGTTCGAGATCAAAAATGA
* * *
16826263 AATTTTCGAACAT-CTAGGGGTAAAATGGTAATTT
1 AATTTTTGGACATCCGA-GGGTAAAATGGTAATTT
16826297 TTGGAAGGTT
Statistics
Matches: 178, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
58 32 0.18
59 143 0.80
60 3 0.02
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (59 bp):
AATTTTTGGACATCCGAGGGTAAAATGGTAATTTACAGAAAGTTCGAGATCAAAAATGA
Found at i:16826110 original size:29 final size:30
Alignment explanation
Indices: 16826078--16826268 Score: 141
Period size: 29 Copynumber: 6.5 Consensus size: 30
16826068 GTTTGGGGTC
* *
16826078 AAAAATGGAATTTTTGGACA-TCCGAGAGT
1 AAAAATGGAATTTTTGGAAAGTTCGAGAGT
16826107 -AAAATGGTAA-TTTTGTGAAAGTTCGAGA-T
1 AAAAATGG-AATTTTTG-GAAAGTTCGAGAGT
* * * *
16826136 CAAAAATGAAATTTTTGGACA-TCCGAGGGT
1 -AAAAATGGAATTTTTGGAAAGTTCGAGAGT
* *
16826166 -AAAATGGTAATGTTTGGAAAGTTC-AGGATT
1 AAAAATGG-AATTTTTGGAAAGTTCGA-GAGT
* * * *
16826196 AAAAATGAAATTTTTAGACA-TTCAAGAGT
1 AAAAATGGAATTTTTGGAAAGTTCGAGAGT
16826225 -AAAATGGTAATTTTTGGAAAGTTCGAGA-T
1 AAAAATGG-AATTTTTGGAAAGTTCGAGAGT
16826254 CAAAAATGGAATTTT
1 -AAAAATGGAATTTT
16826269 CGAACATCTA
Statistics
Matches: 125, Mismatches: 21, Indels: 31
0.71 0.12 0.18
Matches are distributed among these distances:
28 24 0.19
29 39 0.31
30 38 0.30
31 24 0.19
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (30 bp):
AAAAATGGAATTTTTGGAAAGTTCGAGAGT
Found at i:16826151 original size:59 final size:59
Alignment explanation
Indices: 16826076--16826356 Score: 297
Period size: 59 Copynumber: 4.8 Consensus size: 59
16826066 AGGTTTGGGG
16826076 TCAAAAATGGAATTTTTGGACATCCGAGAGTAAAATGGTAATTTTGT-GAAAGTTCGAGA
1 TCAAAAATGGAATTTTTGGACAT-CGAGAGTAAAATGGTAATTTTGTGGAAAGTTCGAGA
* * *
16826135 TCAAAAATGAAATTTTTGGACATCCGAGGGTAAAATGGTAATGTT-TGGAAAGTTC-AGGA
1 TCAAAAATGGAATTTTTGGACAT-CGAGAGTAAAATGGTAATTTTGTGGAAAGTTCGA-GA
* * * *
16826194 TTAAAAATGAAATTTTTAGACATTCAAGAGTAAAATGGTAATTTT-TGGAAAGTTCGAGA
1 TCAAAAATGGAATTTTTGGACA-TCGAGAGTAAAATGGTAATTTTGTGGAAAGTTCGAGA
* * * * * * *
16826253 TCAAAAATGGAATTTTCGAACATCTAGGGGTAAAATGGTAATTTT-TGGAAGGTTCGGGG
1 TCAAAAATGGAATTTTTGGACATCGA-GAGTAAAATGGTAATTTTGTGGAAAGTTCGAGA
* * *
16826312 TCTAAAAGGGAATTTTTGGAAATCGAG-GTCAAAGAT-GTAATTTTG
1 TCAAAAATGGAATTTTTGGACATCGAGAGT-AAA-ATGGTAATTTTG
16826357 AAAAGTTTAA
Statistics
Matches: 190, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
57 2 0.01
58 17 0.09
59 169 0.89
60 2 0.01
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.31
Consensus pattern (59 bp):
TCAAAAATGGAATTTTTGGACATCGAGAGTAAAATGGTAATTTTGTGGAAAGTTCGAGA
Found at i:16826326 original size:118 final size:118
Alignment explanation
Indices: 16826066--16826328 Score: 343
Period size: 118 Copynumber: 2.2 Consensus size: 118
16826056 TAATTTACAG
* * * *
16826066 AGGTTTGGGGTCAAAAATGGAATTTTTGGACATCCGAGAGTAAAATGGTAATTTTGTGAAAGTTC
1 AGGTTCGGGGTCTAAAATGGAATTTTTAGACATCCAAGAGTAAAATGGTAATTTTGTGAAAGTTC
* * *
16826131 GAGATCAAAAATGAAATTTTTGGACATCCGAGGGTAAAATGGTAATGTTTGGA
66 GAGATCAAAAATGAAATTTTCGAACATCAGAGGGTAAAATGGTAATGTTTGGA
* * * * *
16826184 AAGTTCAGGAT-TAAAAATGAAATTTTTAGACATTCAAGAGTAAAATGGTAATTTT-TGGAAAGT
1 AGGTTCGGGGTCT-AAAATGGAATTTTTAGACATCCAAGAGTAAAATGGTAATTTTGT-GAAAGT
* *
16826247 TCGAGATCAAAAATGGAATTTTCGAACATCTAG-GGGTAAAATGGTAATTTTTGGA
64 TCGAGATCAAAAATGAAATTTTCGAACATC-AGAGGGTAAAATGGTAATGTTTGGA
*
16826302 AGGTTCGGGGTCTAAAAGGGAATTTTT
1 AGGTTCGGGGTCTAAAATGGAATTTTT
16826329 GGAAATCGAG
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
117 1 0.01
118 119 0.98
119 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.32
Consensus pattern (118 bp):
AGGTTCGGGGTCTAAAATGGAATTTTTAGACATCCAAGAGTAAAATGGTAATTTTGTGAAAGTTC
GAGATCAAAAATGAAATTTTCGAACATCAGAGGGTAAAATGGTAATGTTTGGA
Found at i:16826413 original size:87 final size:88
Alignment explanation
Indices: 16826224--16826420 Score: 190
Period size: 87 Copynumber: 2.2 Consensus size: 88
16826214 CATTCAAGAG
*
16826224 TAAAATGGTAATTTTTGGAAAGTTCGAGATCAAAAATGGAATTTTCGAACATCTAGGGGTAAAAT
1 TAAAAT-GTAATTTTTGGAAAG-TCGAGATCAAAAATGGAATTTTCGAAAATCTAGGGGTAAAAT
*** *
16826289 GGTAATTTTTGGAAGGTTCGGGGTC
64 GGTAATTTTAAAAAGGTTAGGGGTC
* * * * * * *
16826314 TAAAAGGGAATTTTTGGAAA-TCGAGGTCAAAGATGTAATTTT-GAAAAGTTTAAGGGTTAAAAT
1 TAAAATGTAATTTTTGGAAAGTCGAGATCAAAAATGGAATTTTCGAAAA-TCT-AGGGGTAAAAT
*
16826377 -GTAATTTTCAAAAAGTTTAGGGGT-
64 GGTAATTTT-AAAAAGGTTAGGGGTC
16826401 TAAAATGTAA--TTTGGAAAGT
1 TAAAATGTAATTTTTGGAAAGT
16826421 TTAGGGGTTA
Statistics
Matches: 88, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
85 8 0.09
86 5 0.06
87 37 0.42
88 20 0.23
89 13 0.15
90 5 0.06
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.33
Consensus pattern (88 bp):
TAAAATGTAATTTTTGGAAAGTCGAGATCAAAAATGGAATTTTCGAAAATCTAGGGGTAAAATGG
TAATTTTAAAAAGGTTAGGGGTC
Found at i:16826428 original size:28 final size:29
Alignment explanation
Indices: 16826346--16826457 Score: 154
Period size: 30 Copynumber: 3.8 Consensus size: 29
16826336 GAGGTCAAAG
*
16826346 ATGTAATTTTGAAAAGTTTAAGGGTTAAA
1 ATGTAATTTTGAAAAGTTTAGGGGTTAAA
*
16826375 ATGTAATTTTCAAAAAGTTTAGGGGTTAAA
1 ATGTAATTTT-GAAAAGTTTAGGGGTTAAA
*
16826405 ATGTAA-TTTGGAAAGTTTAGGGGTTAAA
1 ATGTAATTTTGAAAAGTTTAGGGGTTAAA
* *
16826433 ATGTAATTTTTAAGAAGTTTGGGGG
1 ATGTAATTTTGAA-AAGTTTAGGGG
16826458 CCAAATATGA
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
28 23 0.32
29 17 0.23
30 33 0.45
ACGTcount: A:0.37, C:0.01, G:0.25, T:0.38
Consensus pattern (29 bp):
ATGTAATTTTGAAAAGTTTAGGGGTTAAA
Found at i:16826429 original size:58 final size:59
Alignment explanation
Indices: 16826346--16826457 Score: 172
Period size: 58 Copynumber: 1.9 Consensus size: 59
16826336 GAGGTCAAAG
16826346 ATGTAATTTTGAAAAGTTTAAGGGTTAAAATGTAATTTTCAAAAAGTTTAGGGGTTAAA
1 ATGTAATTTTGAAAAGTTTAAGGGTTAAAATGTAATTTTCAAAAAGTTTAGGGGTTAAA
* * * * *
16826405 ATGTAA-TTTGGAAAGTTTAGGGGTTAAAATGTAATTTTTAAGAAGTTTGGGGG
1 ATGTAATTTTGAAAAGTTTAAGGGTTAAAATGTAATTTTCAAAAAGTTTAGGGG
16826458 CCAAATATGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
58 42 0.88
59 6 0.12
ACGTcount: A:0.37, C:0.01, G:0.25, T:0.38
Consensus pattern (59 bp):
ATGTAATTTTGAAAAGTTTAAGGGTTAAAATGTAATTTTCAAAAAGTTTAGGGGTTAAA
Found at i:16828310 original size:15 final size:15
Alignment explanation
Indices: 16828275--16828310 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
16828265 ACTTTGTTTG
*
16828275 TATTTGGACTTTTTT
1 TATTTGGACTTTTAT
16828290 TAATTTGGACTTTTAT
1 T-ATTTGGACTTTTAT
16828306 TATTT
1 TATTT
16828311 TAAATTTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.19, C:0.06, G:0.11, T:0.64
Consensus pattern (15 bp):
TATTTGGACTTTTAT
Found at i:16828329 original size:17 final size:16
Alignment explanation
Indices: 16828309--16828427 Score: 81
Period size: 17 Copynumber: 7.4 Consensus size: 16
16828299 CTTTTATTAT
*
16828309 TTTAAATTTAGAATAAT
1 TTTAAATTTA-AATAAA
16828326 TTTAAATTTAAAAATAAA
1 TTTAAATTT--AAATAAA
*
16828344 TTTAAACTTAAATTAAA
1 TTTAAATTTAAA-TAAA
16828361 TTTAAATTTAAA-ACAA
1 TTTAAATTTAAATA-AA
*
16828377 -ATAAA-TT---TAAA
1 TTTAAATTTAAATAAA
16828388 TTTAAATTTAAAATAAA
1 TTTAAATTT-AAATAAA
*
16828405 CTT-AATCTTAAAATAAA
1 TTTAAAT-TT-AAATAAA
16828422 TTTAAA
1 TTTAAA
16828428 AAATGGGTTT
Statistics
Matches: 82, Mismatches: 7, Indels: 25
0.72 0.06 0.22
Matches are distributed among these distances:
11 2 0.02
12 5 0.06
13 2 0.02
14 2 0.02
15 5 0.06
16 8 0.10
17 42 0.51
18 15 0.18
19 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.40
Consensus pattern (16 bp):
TTTAAATTTAAATAAA
Found at i:16828335 original size:6 final size:6
Alignment explanation
Indices: 16828309--16828399 Score: 77
Period size: 6 Copynumber: 16.0 Consensus size: 6
16828299 CTTTTATTAT
* ** *
16828309 TTTAAA TTTAGAA --TAAT TTTAAA TTTAAA AATAAA TTTAAA CTTAAA
1 TTTAAA TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
**
16828356 -TTAAA TTTAAA TTTAAA -ACAAA --TAAA TTTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
16828400 ATAAACTTAA
Statistics
Matches: 69, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
4 4 0.06
5 10 0.14
6 53 0.77
7 2 0.03
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (6 bp):
TTTAAA
Found at i:16828349 original size:35 final size:37
Alignment explanation
Indices: 16828309--16828395 Score: 117
Period size: 35 Copynumber: 2.4 Consensus size: 37
16828299 CTTTTATTAT
*
16828309 TTTAAATTTAGAA-TAATTTTAAATTT-AA-AAATAAA
1 TTTAAATTTA-AATTAAATTTAAATTTAAACAAATAAA
*
16828344 TTTAAACTTAAATTAAATTTAAATTTAAAACAAATAAA
1 TTTAAATTTAAATTAAATTTAAATTT-AAACAAATAAA
16828382 TTTAAATTTAAATT
1 TTTAAATTTAAATT
16828396 TAAAATAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
34 2 0.04
35 21 0.47
37 2 0.04
38 20 0.44
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (37 bp):
TTTAAATTTAAATTAAATTTAAATTTAAACAAATAAA
Found at i:16828429 original size:12 final size:12
Alignment explanation
Indices: 16828328--16828409 Score: 60
Period size: 12 Copynumber: 6.8 Consensus size: 12
16828318 AGAATAATTT
16828328 TAAATTTAAAAA
1 TAAATTTAAAAA
**
16828340 TAAATTTAAACT
1 TAAATTTAAAAA
**
16828352 TAAA-TTAAATT
1 TAAATTTAAAAA
16828363 TAAATTTAAAACAAA
1 TAAATTT--AA-AAA
**
16828378 TAAATTTAAATT
1 TAAATTTAAAAA
16828390 TAAATTT-AAAA
1 TAAATTTAAAAA
*
16828401 TAAACTTAA
1 TAAATTTAA
16828410 TCTTAAAATA
Statistics
Matches: 55, Mismatches: 10, Indels: 10
0.73 0.13 0.13
Matches are distributed among these distances:
11 18 0.33
12 25 0.45
13 2 0.04
14 2 0.04
15 8 0.15
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.38
Consensus pattern (12 bp):
TAAATTTAAAAA
Found at i:16830714 original size:20 final size:20
Alignment explanation
Indices: 16830689--16830728 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
16830679 TTTTTTCGAA
*
16830689 AGTTGAGTGACTGTTTTGTC
1 AGTTGAGTAACTGTTTTGTC
16830709 AGTTGAGTAACTGTTTTGTC
1 AGTTGAGTAACTGTTTTGTC
16830729 CCCAGATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.10, G:0.28, T:0.45
Consensus pattern (20 bp):
AGTTGAGTAACTGTTTTGTC
Found at i:16838285 original size:24 final size:23
Alignment explanation
Indices: 16838258--16838321 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
16838248 TCATTAACAT
16838258 TGTTCGTGAACATGTTCAATTATA
1 TGTTCGTGAACATGTTCAATTA-A
** * *
16838282 TGTTAATGAACATGATCATTTAA
1 TGTTCGTGAACATGTTCAATTAA
* *
16838305 TGTTCGTGGATATGTTC
1 TGTTCGTGAACATGTTC
16838322 GGTTAATTTA
Statistics
Matches: 31, Mismatches: 9, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
23 13 0.42
24 18 0.58
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (23 bp):
TGTTCGTGAACATGTTCAATTAA
Found at i:16840391 original size:21 final size:19
Alignment explanation
Indices: 16840366--16840433 Score: 61
Period size: 18 Copynumber: 3.6 Consensus size: 19
16840356 TCTCAACAAA
16840366 AATTATAAATTAATTCAAAAT
1 AATTATAAA--AATTCAAAAT
16840387 AATTATAAAAATTC-AAA-
1 AATTATAAAAATTCAAAAT
* * *
16840404 AATGTATATATATTTAAAA-
1 AAT-TATAAAAATTCAAAAT
16840423 AATTATAAAAA
1 AATTATAAAAA
16840434 AATCTAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
17 3 0.08
18 17 0.43
19 11 0.28
21 9 0.22
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.35
Consensus pattern (19 bp):
AATTATAAAAATTCAAAAT
Found at i:16856883 original size:20 final size:20
Alignment explanation
Indices: 16856838--16856884 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
16856828 ATTTTTTAAC
*
16856838 TAAAAATACTCAAAATTTCT
1 TAAAAATACTCAAAATTTCA
*
16856858 TTAAAATA-TCAAAATTTTCA
1 TAAAAATACTCAAAA-TTTCA
16856878 TAAAAAT
1 TAAAAAT
16856885 GTAAAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (20 bp):
TAAAAATACTCAAAATTTCA
Found at i:16861571 original size:16 final size:18
Alignment explanation
Indices: 16861532--16861565 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16861522 TAAATTTATG
16861532 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
16861549 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
16861566 AATTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:16861715 original size:31 final size:30
Alignment explanation
Indices: 16861679--16861736 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
16861669 ATAAAAAATG
*
16861679 TATAAA-ATTATTAAATATTAAAATAATACAA
1 TATAAATATT-TTAAATA-AAAAATAATACAA
*
16861710 TATAAATATTTTTAATAAAAAATAATA
1 TATAAATATTTTAAATAAAAAATAATA
16861737 TGAGCGGACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 9 0.38
31 12 0.50
32 3 0.12
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (30 bp):
TATAAATATTTTAAATAAAAAATAATACAA
Found at i:16862628 original size:22 final size:22
Alignment explanation
Indices: 16862603--16862645 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
16862593 TATCCAAACA
*
16862603 ATAACAATAAAATAGTAGCAAT
1 ATAACAACAAAATAGTAGCAAT
* *
16862625 ATAATAGCAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
16862646 AACAACGTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAT
Found at i:16862657 original size:22 final size:21
Alignment explanation
Indices: 16862632--16862672 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
16862622 AATATAATAG
16862632 CAAAATAGTAGCAAAACAACGT
1 CAAAATAGTAG-AAAACAACGT
* *
16862654 CAAAATGGTAGGAAACAAC
1 CAAAATAGTAGAAAACAAC
16862673 AATAAATGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.12
Consensus pattern (21 bp):
CAAAATAGTAGAAAACAACGT
Found at i:16876223 original size:17 final size:17
Alignment explanation
Indices: 16876201--16876237 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
16876191 CATGAGCAAA
16876201 TTTCATTCCTTATTTTC
1 TTTCATTCCTTATTTTC
16876218 TTTCATTCCTTATTTTC
1 TTTCATTCCTTATTTTC
16876235 TTT
1 TTT
16876238 TCCTTTTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.11, C:0.22, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTCATTCCTTATTTTC
Found at i:16879006 original size:13 final size:13
Alignment explanation
Indices: 16878988--16879017 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
16878978 TCCAATTTTC
16878988 TAATTAAATCATG
1 TAATTAAATCATG
*
16879001 TAATTAAATCATT
1 TAATTAAATCATG
16879014 TAAT
1 TAAT
16879018 ACATTTTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.43
Consensus pattern (13 bp):
TAATTAAATCATG
Found at i:16880107 original size:17 final size:17
Alignment explanation
Indices: 16880085--16880136 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
16880075 AAAATAAATA
16880085 TTATTTATTAAATTAAT
1 TTATTTATTAAATTAAT
*
16880102 TTATTTAATAAATT-AT
1 TTATTTATTAAATTAAT
*
16880118 TTTTTTAATTAAA-TAAT
1 TTATTT-ATTAAATTAAT
16880135 TT
1 TT
16880137 TCTCAACCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 8 0.27
17 22 0.73
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATTTATTAAATTAAT
Found at i:16881800 original size:15 final size:15
Alignment explanation
Indices: 16881757--16881803 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
16881747 TTAAAAAATG
16881757 TATATTATTTTATTT-
1 TATATT-TTTTATTTA
**
16881772 TAATATTTGATATTTA
1 T-ATATTTTTTATTTA
16881788 TATATTTTTTATTTA
1 TATATTTTTTATTTA
16881803 T
1 T
16881804 TGAAATTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 20 0.77
16 6 0.23
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (15 bp):
TATATTTTTTATTTA
Found at i:16881851 original size:23 final size:23
Alignment explanation
Indices: 16881808--16881851 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
16881798 ATTTATTGAA
*
16881808 ATTTTTTATAAAGTTATATTAAC
1 ATTTTTTATAAAGTTACATTAAC
*
16881831 ATTTTTT-TAATGTTTACATTA
1 ATTTTTTATAAAG-TTACATTA
16881852 TAGTAGTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.57
Consensus pattern (23 bp):
ATTTTTTATAAAGTTACATTAAC
Found at i:16884025 original size:21 final size:21
Alignment explanation
Indices: 16884001--16884050 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
16883991 CGCTCAATAC
16884001 TTAGCAACTAAT-ACAAATTGA
1 TTAGCAACTAATAAC-AATTGA
*
16884022 TTAGAAACTAATAACAATTGA
1 TTAGCAACTAATAACAATTGA
16884043 TTA-CAACT
1 TTAGCAACT
16884051 GCAACAGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 4 0.15
21 20 0.77
22 2 0.08
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.30
Consensus pattern (21 bp):
TTAGCAACTAATAACAATTGA
Found at i:16884435 original size:61 final size:61
Alignment explanation
Indices: 16884335--16884456 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
16884325 CAACAGCACT
16884335 AGAACTATCACACCAAATGACTGGTGTGTCCACTAAAGGAACCTGAAGTTCACTCAAGAAA
1 AGAACTATCACACCAAATGACTGGTGTGTCCACTAAAGGAACCTGAAGTTCACTCAAGAAA
*
16884396 AGAACTATCACACCAAATGACTGGTGTGTCCACTGAAGGAACCTGAAGTTCACTCAAGAAA
1 AGAACTATCACACCAAATGACTGGTGTGTCCACTAAAGGAACCTGAAGTTCACTCAAGAAA
16884457 GACACTAACC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.20
Consensus pattern (61 bp):
AGAACTATCACACCAAATGACTGGTGTGTCCACTAAAGGAACCTGAAGTTCACTCAAGAAA
Found at i:16896065 original size:8 final size:8
Alignment explanation
Indices: 16896024--16896054 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
16896014 AAATACGTTC
16896024 GCTCTCTT
1 GCTCTCTT
16896032 GCTCTCTT
1 GCTCTCTT
16896040 GCTCTCTT
1 GCTCTCTT
16896048 GCTCTCT
1 GCTCTCT
16896055 CTCCTGCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.39, G:0.13, T:0.48
Consensus pattern (8 bp):
GCTCTCTT
Found at i:16896984 original size:18 final size:19
Alignment explanation
Indices: 16896958--16896999 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
16896948 TATCCTTCCT
*
16896958 AATAATAAAAAGAAAA-AA
1 AATAGTAAAAAGAAAACAA
*
16896976 AATAGTAAAAATAAAACAA
1 AATAGTAAAAAGAAAACAA
16896995 AATAG
1 AATAG
16897000 AGTGATATGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.14
Consensus pattern (19 bp):
AATAGTAAAAAGAAAACAA
Found at i:16904018 original size:20 final size:20
Alignment explanation
Indices: 16903993--16904043 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
16903983 TTAATTATAT
16903993 TAATTATATATGTTAAATAA
1 TAATTATATATGTTAAATAA
16904013 TAATTATATATGTTAAATAA
1 TAATTATATATGTTAAATAA
16904033 TAATTATATAT
1 TAATTATATAT
16904044 TTATATTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (20 bp):
TAATTATATATGTTAAATAA
Found at i:16907132 original size:15 final size:15
Alignment explanation
Indices: 16907112--16907149 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
16907102 AATTGTTATA
*
16907112 AAAAAAAAATAAAAG
1 AAAAAAAAAGAAAAG
16907127 AAAAAAAAAGAAAAG
1 AAAAAAAAAGAAAAG
16907142 AAAAAAAA
1 AAAAAAAA
16907150 TGCAATTCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.89, C:0.00, G:0.08, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAGAAAAG
Found at i:16915850 original size:11 final size:11
Alignment explanation
Indices: 16915836--16915878 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
16915826 TGATTAATAT
16915836 ATAAACGAGTC
1 ATAAACGAGTC
*
16915847 ATAAACGAGCC
1 ATAAACGAGTC
*
16915858 AATAAACGAGTTT
1 -ATAAACGAG-TC
16915871 ATAAACGA
1 ATAAACGA
16915879 ATCAATGAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.37
12 17 0.63
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (11 bp):
ATAAACGAGTC
Found at i:16915884 original size:24 final size:23
Alignment explanation
Indices: 16915836--16915891 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 23
16915826 TGATTAATAT
*
16915836 ATAAACGAGTCATAAACGAGCCA
1 ATAAACGAGTCATAAACGAACCA
* *
16915859 ATAAACGAGTTTATAAACGAATCA
1 ATAAACGAG-TCATAAACGAACCA
*
16915883 ATGAACGAG
1 ATAAACGAG
16915892 CTTGTTCGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 9 0.32
24 19 0.68
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (23 bp):
ATAAACGAGTCATAAACGAACCA
Found at i:16916468 original size:31 final size:29
Alignment explanation
Indices: 16916428--16916497 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
16916418 ATTTTAAAAT
* * *
16916428 TATACATGAATTTTGATTTAATGTGTAATTG
1 TATATATGAATTTTGATTT--GGTGTAATTA
*
16916459 TATATATGAATTTTGGTTTGGTGTAATTA
1 TATATATGAATTTTGATTTGGTGTAATTA
16916488 TATATATGAA
1 TATATATGAA
16916498 ATTCTAATTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 18 0.51
31 17 0.49
ACGTcount: A:0.33, C:0.01, G:0.17, T:0.49
Consensus pattern (29 bp):
TATATATGAATTTTGATTTGGTGTAATTA
Found at i:16916725 original size:29 final size:30
Alignment explanation
Indices: 16916682--16916761 Score: 81
Period size: 29 Copynumber: 2.6 Consensus size: 30
16916672 GAATTGGATC
* *
16916682 AAATCAAAATTTCATGTATAAAATTGCACA-
1 AAATC-AAAGTTCATGTATAAAATTACACAT
* *
16916712 AAATCAAAGTTCATATATACAATTACACATT
1 AAATCAAAGTTCATGTATAAAATTACACA-T
* *
16916743 AAATTATAGTTCATGTATA
1 AAATCAAAGTTCATGTATA
16916762 GCCTTGAGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 20 0.49
30 5 0.12
31 16 0.39
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.34
Consensus pattern (30 bp):
AAATCAAAGTTCATGTATAAAATTACACAT
Found at i:16917684 original size:30 final size:26
Alignment explanation
Indices: 16917606--16917713 Score: 83
Period size: 27 Copynumber: 3.9 Consensus size: 26
16917596 ATTGTGTTTT
*
16917606 TTTTAAGGGTCCAAATTTTTTTTTAAC
1 TTTTAAGGGTCCAAA-CTTTTTTTAAC
*
16917633 TTTTAAAGG-CCAAACAATTTTTTTACCCAC
1 TTTTAAGGGTCCAAAC--TTTTTTTA---AC
*
16917663 TTTTAAGGGGTCCAAACTTTTTTAAAGC
1 TTTTAA-GGGTCCAAACTTTTTTTAA-C
* * *
16917691 TTTTCATGGTCCAAATTTTTTTT
1 TTTTAAGGGTCCAAACTTTTTTT
16917714 TTTACTAATT
Statistics
Matches: 65, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
26 5 0.08
27 31 0.48
28 6 0.09
30 15 0.23
31 2 0.03
32 6 0.09
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (26 bp):
TTTTAAGGGTCCAAACTTTTTTTAAC
Found at i:16917767 original size:29 final size:30
Alignment explanation
Indices: 16917710--16917767 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 30
16917700 TCCAAATTTT
*
16917710 TTTTTTTACTAATTTTTAAGAGATTTAAAGC
1 TTTTTTTA-TAATTTTTAAGAGATCTAAAGC
16917741 TTTTTTT-TAATTTTTAA-AGAATCTAAA
1 TTTTTTTATAATTTTTAAGAG-ATCTAAA
16917768 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 2 0.08
29 16 0.64
31 7 0.28
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.53
Consensus pattern (30 bp):
TTTTTTTATAATTTTTAAGAGATCTAAAGC
Found at i:16917896 original size:85 final size:85
Alignment explanation
Indices: 16917787--16917954 Score: 327
Period size: 85 Copynumber: 2.0 Consensus size: 85
16917777 TATTATTTTA
*
16917787 CTTACGACCGCAAAAATATCAAGAACGAGCATGAGAAATTACAATGTTAATATTTTAGATGAATT
1 CTTACGACCGCAAAAATATCAAGAACGAGCATGAGAAATAACAATGTTAATATTTTAGATGAATT
16917852 TAAAATGTTAAAATCATTTG
66 TAAAATGTTAAAATCATTTG
16917872 CTTACGACCGCAAAAATATCAAGAACGAGCATGAGAAATAACAATGTTAATATTTTAGATGAATT
1 CTTACGACCGCAAAAATATCAAGAACGAGCATGAGAAATAACAATGTTAATATTTTAGATGAATT
16917937 TAAAATGTTAAAATCATT
66 TAAAATGTTAAAATCATT
16917955 AATAATCCGT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 82 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.30
Consensus pattern (85 bp):
CTTACGACCGCAAAAATATCAAGAACGAGCATGAGAAATAACAATGTTAATATTTTAGATGAATT
TAAAATGTTAAAATCATTTG
Found at i:16918254 original size:14 final size:15
Alignment explanation
Indices: 16918235--16918273 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
16918225 TTGTTTTACT
16918235 AAAAATGATTTTC-A
1 AAAAATGATTTTCTA
*
16918249 AAAAAT-AATTTCTA
1 AAAAATGATTTTCTA
16918263 AAAAATGATTT
1 AAAAATGATTT
16918274 ATTTTTCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 5 0.24
14 13 0.62
15 3 0.14
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (15 bp):
AAAAATGATTTTCTA
Found at i:16918624 original size:15 final size:16
Alignment explanation
Indices: 16918603--16918659 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
16918593 TATACTACAA
16918603 AATATTTATTATTAAT
1 AATATTTATTATTAAT
*
16918619 -ATATTTATAATTGTAAT
1 AATATTTATTA-T-TAAT
*
16918636 AAATATTTATTATTCAAA
1 -AATATTTATTATT-AAT
16918654 AATATT
1 AATATT
16918660 AATATTGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
15 9 0.27
16 1 0.03
17 11 0.33
18 3 0.09
19 9 0.27
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (16 bp):
AATATTTATTATTAAT
Found at i:16918658 original size:17 final size:16
Alignment explanation
Indices: 16918601--16918659 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 16
16918591 TTTATACTAC
16918601 AAAATATTTATTATT-
1 AAAATATTTATTATTA
* *
16918616 AATATATTTATAATTGTA
1 AAAATATTTATTA-T-TA
16918634 ATAAATATTTATTATTCA
1 A-AAATATTTATTATT-A
16918652 AAAATATT
1 AAAATATT
16918660 AATATTGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 11 0.31
16 1 0.03
17 9 0.26
18 4 0.11
19 10 0.29
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (16 bp):
AAAATATTTATTATTA
Found at i:16918785 original size:28 final size:26
Alignment explanation
Indices: 16918724--16918792 Score: 68
Period size: 28 Copynumber: 2.5 Consensus size: 26
16918714 AATAAAATTG
16918724 AAATATGAAATAATTTATTAAAATAAT
1 AAATAT-AAATAATTTATTAAAATAAT
* * *
16918751 AATTATATTAATAATTTATT-ATATGACT
1 AA--ATATAAATAATTTATTAAAAT-AAT
16918779 AAATATAAATAATT
1 AAATATAAATAATT
16918793 AAATATATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
26 11 0.31
27 5 0.14
28 15 0.43
29 4 0.11
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (26 bp):
AAATATAAATAATTTATTAAAATAAT
Found at i:16918859 original size:60 final size:52
Alignment explanation
Indices: 16918784--16918894 Score: 123
Period size: 60 Copynumber: 2.0 Consensus size: 52
16918774 TGACTAAATA
*
16918784 TAAATAATTAAATATATATGTTTAATAATATTGAAAAATAAAATATTTTATATTAATATT
1 TAAATAATTAAATATAT-T-TTT-A-AA-ATT-AAAAATAAAAT-TTAT-TATTAATATT
**
16918844 TAAATAATTTTATATATTTTTAAAATTAAAAATAAAATTTATTATTAATAT
1 TAAATAATTAAATATATTTTTAAAATTAAAAATAAAATTTATTATTAATAT
16918895 AATAATATTA
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
52 9 0.19
53 3 0.06
54 11 0.23
55 3 0.06
56 2 0.04
57 1 0.02
58 3 0.06
59 1 0.02
60 15 0.31
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (52 bp):
TAAATAATTAAATATATTTTTAAAATTAAAAATAAAATTTATTATTAATATT
Found at i:16929929 original size:18 final size:18
Alignment explanation
Indices: 16929906--16929940 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
16929896 GCATAAATTA
16929906 AATTAA-AAAAGTTAAAAG
1 AATTAAGAAAAG-TAAAAG
16929924 AATTAAGAAAAGTAAAA
1 AATTAAGAAAAGTAAAA
16929941 AAAAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20
Consensus pattern (18 bp):
AATTAAGAAAAGTAAAAG
Found at i:16931181 original size:19 final size:20
Alignment explanation
Indices: 16931152--16931193 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
16931142 GGGTAAATAT
16931152 TTTATTGTTTTTTAA-TTTAA
1 TTTATTG-TTTTTAATTTTAA
16931172 TTTA-TGTTTTTAATTTTAA
1 TTTATTGTTTTTAATTTTAA
16931191 TTT
1 TTT
16931194 TTTTGATGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.33
19 10 0.48
20 4 0.19
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (20 bp):
TTTATTGTTTTTAATTTTAA
Found at i:16949634 original size:59 final size:59
Alignment explanation
Indices: 16949559--16949878 Score: 484
Period size: 59 Copynumber: 5.4 Consensus size: 59
16949549 AAGAAACGAC
* * * *
16949559 GAAATCAGGGTTAAAAATGGGACTTTTGGATA-CTCGGGGGCAAAATGGTAATTTTTGGT
1 GAAATCAGGGTTAAAAAT-GGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGT
** * *
16949618 GAAATTGGGGTCAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGT
1 GAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGT
* *
16949677 GAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTTGGT
1 GAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGT
*
16949736 GAAATCAAGGTTAAAAATGGAATTTTGG-AAGTTCGGGGGTAAAATGGTAATTTTTGGT
1 GAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGT
16949794 GAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGT
1 GAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGT
* *
16949853 GAAATC-GAGGTTAAAGATAGAATTTT
1 GAAATCAG-GGTTAAAAATGGAATTTT
16949879 TTGAAATTTT
Statistics
Matches: 240, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
58 68 0.28
59 172 0.72
ACGTcount: A:0.34, C:0.04, G:0.30, T:0.32
Consensus pattern (59 bp):
GAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGT
Found at i:16949805 original size:117 final size:118
Alignment explanation
Indices: 16949559--16949878 Score: 500
Period size: 117 Copynumber: 2.7 Consensus size: 118
16949549 AAGAAACGAC
* * * *
16949559 GAAATCAGGGTTAAAAATGGGACTTTTGGATA-CTCGGGGGCAAAATGGTAATTTTTGGTGAAAT
1 GAAATCAGGGTTAAAAAT-GGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAAT
* * * *
16949623 TGGGGTCAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGT
65 CGAGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGT
* *
16949677 GAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTTGGTGAAATC
1 GAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATC
*
16949742 AAGGTTAAAAATGGAATTTTGG-AAGTTCGGGGGTAAAATGGTAATTTTTGGT
66 GAGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGT
16949794 GAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATC
1 GAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATC
* *
16949859 GAGGTTAAAGATAGAATTTT
66 GAGGTTAAAAATGGAATTTT
16949879 TTGAAATTTT
Statistics
Matches: 185, Mismatches: 16, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
117 120 0.65
118 65 0.35
ACGTcount: A:0.34, C:0.04, G:0.30, T:0.32
Consensus pattern (118 bp):
GAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATC
GAGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGT
Found at i:16949906 original size:176 final size:177
Alignment explanation
Indices: 16949559--16949878 Score: 518
Period size: 176 Copynumber: 1.8 Consensus size: 177
16949549 AAGAAACGAC
* * *
16949559 GAAATCAGGGTTAAAAATGGGACTTTTGGATACTCGGGGGCAAAATGGTAATTTTTGGTGAAATT
1 GAAATCAAGGTTAAAAATGGGAATTTTGGATACTCGGGGGCAAAATGGTAATTTTTGGTGAAATC
* * *
16949624 GGGGTCAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTT
66 AGGGTCAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTT
*
16949689 AAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTTGGT
131 AAAAATAGAATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTTGGT
* *
16949736 GAAATCAAGGTTAAAAAT-GGAATTTTGGA-AGTTCGGGGGTAAAATGGTAATTTTTGGTGAAAT
1 GAAATCAAGGTTAAAAATGGGAATTTTGGATA-CTCGGGGGCAAAATGGTAATTTTTGGTGAAAT
*
16949799 CAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGT
65 CAGGGTCAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGT
*
16949864 TAAAGATAGAATTTT
130 TAAAAATAGAATTTT
16949879 TTGAAATTTT
Statistics
Matches: 131, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
175 1 0.01
176 113 0.86
177 17 0.13
ACGTcount: A:0.34, C:0.04, G:0.30, T:0.32
Consensus pattern (177 bp):
GAAATCAAGGTTAAAAATGGGAATTTTGGATACTCGGGGGCAAAATGGTAATTTTTGGTGAAATC
AGGGTCAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTT
AAAAATAGAATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTTGGT
Found at i:16950594 original size:6 final size:6
Alignment explanation
Indices: 16950583--16950641 Score: 50
Period size: 6 Copynumber: 9.8 Consensus size: 6
16950573 AAGTAAGGCC
* * * *
16950583 CTTTTT CTTTTT C-ATTT CATTTT CTCTCTT GTTATTT C-TTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CT-TTTT CTT-TTT CTTTTT CTTTTT
16950631 CTTTTT CTTTT
1 CTTTTT CTTTT
16950642 AAATCCCCCT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
5 8 0.19
6 28 0.67
7 6 0.14
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.75
Consensus pattern (6 bp):
CTTTTT
Found at i:16950695 original size:24 final size:24
Alignment explanation
Indices: 16950649--16950695 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
16950639 TTTAAATCCC
* *
16950649 CCTTTTTTATTTTAAAACTAAACT
1 CCTTTTTTACTTTAAAACCAAACT
16950673 CCTTTTTT-CTTTAAAGACCAAAC
1 CCTTTTTTACTTTAAA-ACCAAAC
16950696 CCAAATCCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (24 bp):
CCTTTTTTACTTTAAAACCAAACT
Found at i:16951020 original size:19 final size:20
Alignment explanation
Indices: 16950998--16951043 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
16950988 ATTGATTACT
16950998 AATATTAATTA-TAATTA-TA
1 AATATTAATTACT-ATTATTA
*
16951017 AATATTCATTACTATTATTA
1 AATATTAATTACTATTATTA
16951037 AATATTA
1 AATATTA
16951044 TGATTATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (20 bp):
AATATTAATTACTATTATTA
Found at i:16951051 original size:19 final size:19
Alignment explanation
Indices: 16951011--16951052 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
16951001 ATTAATTATA
*
16951011 ATTATAAATATTCATTACT
1 ATTATAAATATTCATGACT
*
16951030 ATTATTAAATATT-ATGATT
1 ATTA-TAAATATTCATGACT
16951049 ATTA
1 ATTA
16951053 ATAATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (19 bp):
ATTATAAATATTCATGACT
Found at i:16951065 original size:15 final size:15
Alignment explanation
Indices: 16951047--16951076 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16951037 AATATTATGA
16951047 TTATTAATAATATTT
1 TTATTAATAATATTT
*
16951062 TTATTAATGATATTT
1 TTATTAATAATATTT
16951077 ATGAAATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (15 bp):
TTATTAATAATATTT
Found at i:16951776 original size:6 final size:6
Alignment explanation
Indices: 16951760--16951848 Score: 91
Period size: 6 Copynumber: 15.0 Consensus size: 6
16951750 TTAAATTTGT
16951760 TTTATAA TTTAAA TTTAAA TTTAAA TTTAAGA --TAAA TTTAAA TAATTAAA
1 TTTA-AA TTTAAA TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA T--TTAAA
16951810 TTTAAA TTTAAGA --TAAA TTTAAA TTTAAA --TAAA TTTAAA
1 TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
16951849 ATCAATTTAA
Statistics
Matches: 72, Mismatches: 0, Indels: 21
0.77 0.00 0.23
Matches are distributed among these distances:
4 6 0.08
5 6 0.08
6 48 0.67
7 6 0.08
8 6 0.08
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (6 bp):
TTTAAA
Found at i:16951797 original size:11 final size:11
Alignment explanation
Indices: 16951781--16951831 Score: 61
Period size: 11 Copynumber: 4.8 Consensus size: 11
16951771 AATTTAAATT
16951781 TAAATTTAAGA
1 TAAATTTAAGA
16951792 TAAATTTAA-A
1 TAAATTTAAGA
* **
16951802 T-AATTAAATT
1 TAAATTTAAGA
16951812 TAAATTTAAGA
1 TAAATTTAAGA
16951823 TAAATTTAA
1 TAAATTTAA
16951832 ATTTAAATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
9 6 0.18
10 3 0.09
11 24 0.73
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (11 bp):
TAAATTTAAGA
Done.