Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 59 of 135
Found at i:20103333 original size:419 final size:414
Alignment explanation
Indices: 20102556--20103764 Score: 1591
Period size: 419 Copynumber: 2.9 Consensus size: 414
20102546 ACTTCATTGT
* *
20102556 TTTGATCCACTTCTCTGTATCTCATCAAGAAGATAACTGCTTTATTGCTTCGACCCACTTCTCTG
1 TTTGAT-CACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTCGA-CCACTTCTCTG
* * * *
20102621 TA-CATCATCAGGAAGATAAGGGTTTAAAGTTTCACTCACATTGAGCTTGGCTTCATTGATTTGG
64 TATC-TTATCAGGAAGATGAGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGATTTGG
* * *
20102685 TCTACTTTTTTGTATCTTATCAGGAAGATGACAGCCTCATTGTTTTAATCCATTTCTCTATATCT
128 TCTAC-TTATTGTATCTTATCAGGAAGATGACAGCCTCATTGTTTTAATCCACTTCTCTGTATCT
* * * * * *
20102750 CATCAGAAAGATGAATTTGGTCCACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTATTGCTT
192 CATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCACTTTATTGCTT
* * * * *
20102815 TAACCCACTTCTCTATATCTCATCAAGAAGATGGGGGTTT-GAAGTTTCACTCACATTGAGCTTC
257 TGACCCACTTTTCTGTATCTCATCAGGAAGAT-GGGGTTTGGAAGTTTCACTCATATTGAGCTTC
* * * * * *
20102879 GCTTCATCGATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGACCGTCTCATTTTTTTAATC
321 GCTTCATTGAATTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACC-TCTCATTGTTTTAATC
*
20102944 CACTTCTCTGTATCTCATCAGAAAGACGAA
385 CACTTCTCTGTATCTAATCAGAAAGACGAA
* **
20102974 TTTGATCAATTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTAACTCACTTCTCTG
1 TTTGATC-ACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTCGAC-CACTTCTCTG
* * *
20103039 TATCTTATCAGGAAGATGAGGGTTTGAAGTTTCACTCAAATTGTGCTTCGCTTCATCGATTTGGT
64 TATCTTATCAGGAAGATGAGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGATTTGGT
* * * *
20103104 CTACTTAAATTGTATCTCATCAGGAAGATAACCGCCTCATTATTTTAATCCACTTCTCTGTATCT
129 CTACTT--ATTGTATCTTATCAGGAAGATGACAGCCTCATTGTTTTAATCCACTTCTCTGTATCT
*
20103169 CATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGATCACTTTATTGCTT
192 CATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCACTTTATTGCTT
*
20103234 TGACCCACTTTTTTGTATCTCATCAGGAAGATGGGGTTTGGAAGTTTCACTCATATTGAGCTTCG
257 TGACCCACTTTTCTGTATCTCATCAGGAAGATGGGGTTTGGAAGTTTCACTCATATTGAGCTTCG
*
20103299 CTTCATTGAATTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACACTTTCATTGTTTTAATCC
322 CTTCATTGAATTGGTCTACTTCTTTGTATCTCATCAGGAAGATGAC-CTCTCATTGTTTTAATCC
* *
20103364 ACTTCTCTGTATCTAATTAGAAAGACGGA
386 ACTTCTCTGTATCTAATCAGAAAGACGAA
* * * * * * *
20103393 TTTGGTTCACTTCTCTGCATCTCGTTAGGAAGATGACCACTTTATTACTTCGACCTACTTCTCTG
1 TTT-GATCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTCGACC-ACTTCTCTG
* * * *
20103458 TATCTTATCAAGAAGATG-GGGTATGGAAGTTTCACTCACATTGAGCTTCGCCTCATTGAATTGG
64 TATCTTATCAGGAAGATGAGGGT-TTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGATTTGG
* * * *
20103522 TCTTCTTCTCTGTATCTTATCAGGAAGATGACTGCTTCATTGTTTTAATCCACTTCTCTGTATCT
128 TCTACTTAT-TGTATCTTATCAGGAAGATGACAGCCTCATTGTTTTAATCCACTTCTCTGTATCT
* * * * * *
20103587 TATCAGGAAGACGGATTTGGTTCACTTCTCTGCATCTCGTCAAGAAGATGGCCACTATATTGCTT
192 CATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCACTTTATTGCTT
* * * *
20103652 CGACCCA-TTTCTCTGTATCTCATCAGGAAGATAGGGTTTGGAAGTTTCACTC-TCATTGACCTC
257 TGACCCACTTT-TCTGTATCTCATCAGGAAGATGGGGTTTGGAAGTTTCACTCAT-ATTGAGCTT
* ** *
20103715 CGCTTCATTGAATTGGTTTGTTTCTTTGTATCTCATTAGGAAGATGACCT
320 CGCTTCATTGAATTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCT
20103765 TTTGAAGTTT
Statistics
Matches: 696, Mismatches: 82, Indels: 27
0.86 0.10 0.03
Matches are distributed among these distances:
417 11 0.02
418 332 0.48
419 349 0.50
420 4 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (414 bp):
TTTGATCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTCGACCACTTCTCTGTA
TCTTATCAGGAAGATGAGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGATTTGGTCT
ACTTATTGTATCTTATCAGGAAGATGACAGCCTCATTGTTTTAATCCACTTCTCTGTATCTCATC
AGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCACTTTATTGCTTTGAC
CCACTTTTCTGTATCTCATCAGGAAGATGGGGTTTGGAAGTTTCACTCATATTGAGCTTCGCTTC
ATTGAATTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCTCTCATTGTTTTAATCCACTTC
TCTGTATCTAATCAGAAAGACGAA
Found at i:20106166 original size:54 final size:54
Alignment explanation
Indices: 20106084--20106193 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
20106074 ATCAAGGTTA
20106084 GAGTGACCAGAGCATCAACATCTGATTTTCTTCTCGTGGGAGATAATGGAATGT
1 GAGTGACCAGAGCATCAACATCTGATTTTCTTCTCGTGGGAGATAATGGAATGT
*
20106138 GAGTGACCAGAGCATCAACATCTGATTTTCTTCTTGTGGGAGATAATGGAATGT
1 GAGTGACCAGAGCATCAACATCTGATTTTCTTCTCGTGGGAGATAATGGAATGT
20106192 GA
1 GA
20106194 CATTGTCAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (54 bp):
GAGTGACCAGAGCATCAACATCTGATTTTCTTCTCGTGGGAGATAATGGAATGT
Found at i:20112632 original size:31 final size:31
Alignment explanation
Indices: 20112567--20112670 Score: 99
Period size: 31 Copynumber: 3.5 Consensus size: 31
20112557 ATTTTAGGGT
* * *
20112567 CAAAATGTAATTTT-AAGAAAGTTT-AGGGT
1 CAAAATGTGATTTTCAAGAAAGTTTGGGGGC
* * **
20112596 TAAAATGTAATTTTTTA-AAAGTTTGGGAGGC
1 CAAAATGTGATTTTCAAGAAAGTTTGGG-GGC
*
20112627 CAAAATGTGA-TTTCAAGAAAGTTTGGGGGT
1 CAAAATGTGATTTTCAAGAAAGTTTGGGGGC
20112657 CAAAATGTGATTTT
1 CAAAATGTGATTTT
20112671 AGAAGATTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
29 20 0.33
30 18 0.30
31 23 0.38
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.36
Consensus pattern (31 bp):
CAAAATGTGATTTTCAAGAAAGTTTGGGGGC
Found at i:20112663 original size:30 final size:30
Alignment explanation
Indices: 20112563--20112850 Score: 167
Period size: 30 Copynumber: 9.6 Consensus size: 30
20112553 AAGAATTTTA
*
20112563 GGGTCAAAATGTAATTTTAAGAAAGTTT-A
1 GGGTCAAAATGTAATTTTAAGAAAGTTTGG
* *
20112592 GGGTTAAAATGTAATTTTTTA-AAAGTTTGG
1 GGGTCAAAATGTAA-TTTTAAGAAAGTTTGG
* * *
20112622 GAGGCCAAAATGTGATTTCAAGAAAGTTTGG
1 G-GGTCAAAATGTAATTTTAAGAAAGTTTGG
* * *
20112653 GGGTCAAAATGTGATTTT-AGAAGATTTTTG
1 GGGTCAAAATGTAATTTTAAGAA-AGTTTGG
* * * ** **
20112683 GGATAAAAATGTGATTTTGGGAAAGTTTAA
1 GGGTCAAAATGTAATTTTAAGAAAGTTTGG
* * *
20112713 GGGTCAAAATGTAA-TTTAGGAAAAATTTGA
1 GGGTCAAAATGTAATTTTAAG-AAAGTTTGG
* * * * * *
20112743 GGGTTAAAAGGCAATTTT-GGAAAAGTTCGA
1 GGGTCAAAATGTAATTTTAAG-AAAGTTTGG
* * * *
20112773 GGGTTAAAAGGTAATTTT-AGAAAAGTTCGA
1 GGGTCAAAATGTAATTTTAAG-AAAGTTTGG
* **
20112803 GGGACAAAATGTAATTTT-AGAAAAGTTTAA
1 GGGTCAAAATGTAATTTTAAG-AAAGTTTGG
*
20112833 AGGTCAAAATGTAATTTT
1 GGGTCAAAATGTAATTTT
20112851 TTAAATAAAG
Statistics
Matches: 213, Mismatches: 38, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
29 29 0.14
30 158 0.74
31 26 0.12
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.33
Consensus pattern (30 bp):
GGGTCAAAATGTAATTTTAAGAAAGTTTGG
Found at i:20112850 original size:60 final size:60
Alignment explanation
Indices: 20112562--20112850 Score: 228
Period size: 60 Copynumber: 4.8 Consensus size: 60
20112552 GAAGAATTTT
* * **
20112562 AGGGTCAAAATGTAATTTTA-AGAAAGTTT-AGGGTTAAAATGTAATTTTTTAAAAGTTTG
1 AGGGACAAAATGTAATTTTAGA-AAAGTTTAAGGGTCAAAATGTAATTTTAGAAAAGTTTG
* * * * ** * * *
20112621 GGAGGCCAAAATGTGATTTCA-AGAAAGTTTGGGGGTCAAAATGTGATTTTAGAAGA-TTTT
1 AG-GGACAAAATGTAATTTTAGA-AAAGTTTAAGGGTCAAAATGTAATTTTAGAAAAGTTTG
* * * * * *
20112681 TGGGATAAAAATGTGATTTTGGGAAAGTTTAAGGGTCAAAATGTAA-TTTAGGAAAAATTTG
1 AGGGA-CAAAATGTAATTTTAGAAAAGTTTAAGGGTCAAAATGTAATTTTA-GAAAAGTTTG
** * * * ** * * *
20112742 AGGGTTAAAAGGCAATTTTGGAAAAGTTCGAGGGTTAAAAGGTAATTTTAGAAAAGTTCG
1 AGGGACAAAATGTAATTTTAGAAAAGTTTAAGGGTCAAAATGTAATTTTAGAAAAGTTTG
*
20112802 AGGGACAAAATGTAATTTTAGAAAAGTTTAAAGGTCAAAATGTAATTTT
1 AGGGACAAAATGTAATTTTAGAAAAGTTTAAGGGTCAAAATGTAATTTT
20112851 TTAAATAAAG
Statistics
Matches: 178, Mismatches: 45, Indels: 13
0.75 0.19 0.06
Matches are distributed among these distances:
59 7 0.04
60 142 0.80
61 29 0.16
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.33
Consensus pattern (60 bp):
AGGGACAAAATGTAATTTTAGAAAAGTTTAAGGGTCAAAATGTAATTTTAGAAAAGTTTG
Found at i:20113681 original size:85 final size:85
Alignment explanation
Indices: 20113532--20113699 Score: 232
Period size: 85 Copynumber: 2.0 Consensus size: 85
20113522 TGGCTTCATT
* * * *
20113532 GATTTGGTCTACTTCTTTGTATCTCATTAGGAAGATGACCGACTCATTGTTTTAATCCATTTCTC
1 GATTTGGTCCACTTCTTTGTATCTCATTAGGAAGATGACCGACTCATTGCTTTAACCCACTTCTC
*
20113597 TATATCTCATCGGGAAGACG
66 TATATCTCATCAGGAAGACG
* *
20113617 GATTTGGTCCACTT-TTCTGTATCTCATTAGGAAGATGACCG-CTTTATTGCTTTGACCCACTTC
1 GATTTGGTCCACTTCTT-TGTATCTCATTAGGAAGATGACCGAC-TCATTGCTTTAACCCACTTC
*
20113680 TCTGTATCTCATCAGGAAGA
64 TCTATATCTCATCAGGAAGA
20113700 TGGGAGTTTG
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
84 3 0.04
85 70 0.96
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (85 bp):
GATTTGGTCCACTTCTTTGTATCTCATTAGGAAGATGACCGACTCATTGCTTTAACCCACTTCTC
TATATCTCATCAGGAAGACG
Found at i:20113739 original size:209 final size:208
Alignment explanation
Indices: 20113466--20114093 Score: 979
Period size: 209 Copynumber: 3.0 Consensus size: 208
20113456 GATTTGGTCT
* *
20113466 ACTTCTCTGTATCTCATCAGGAAGATAGGGGTTTGAAGTTTCACTCACGTTGAGCTTGGCTTCAT
1 ACTTCTCTGTATCTCATCAGGAAGAT-GGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCAT
* * *
20113531 TGATTTGGTCTACTTCTTTGTATCTCATTAGGAAGATGACCGACTCATTGTTTTAATCCATTTCT
65 TGATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCT
* * * *
20113596 CTATATCTCATCGGGAAGACGGATTTGGTCCACTTTTCTGTATCTCATTAGGAAGATGACCGCTT
130 CTGTATCTCATCGGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTT
20113661 TATTGCTTTGACCC
195 TATTGCTTTGACCC
* *
20113675 ACTTCTCTGTATCTCATCAGGAAGATGGGAGTTTGAAATTTCACTCACATTGAACTTCGCTTCAT
1 ACTTCTCTGTATCTCATCAGGAAGATGGG-GTTTGAAGTTTCACTCACATTGAGCTTCGCTTCAT
* * * *
20113740 CGATTTGGTCTATTTCTCTGTATCTTATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCT
65 TGATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCT
* * *
20113805 CTGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGATCGTTT
130 CTGTATCTCATCGGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTT
20113870 TATTGCTTTGACCC
195 TATTGCTTTGACCC
* *
20113884 ACTTCTTTGTATCTCATCAAGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCAT
1 ACTTCTCTGTATCTCATCAGGAAGAT-GGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCAT
*
20113949 TGATTTGGTTTACTTCTTTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCT
65 TGATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCT
* * *
20114014 CTGTATCTCAT-GAGGGAGACGGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGATCGCT
130 CTGTATCTCATCG-GGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCT
* *
20114078 GTACTGCTTTGACCC
194 TTATTGCTTTGACCC
20114093 A
1 A
20114094 TTGTCAAAAC
Statistics
Matches: 381, Mismatches: 35, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
208 3 0.01
209 375 0.98
210 3 0.01
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (208 bp):
ACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATT
GATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTC
TGTATCTCATCGGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTT
ATTGCTTTGACCC
Found at i:20113886 original size:85 final size:85
Alignment explanation
Indices: 20113741--20113908 Score: 219
Period size: 85 Copynumber: 2.0 Consensus size: 85
20113731 TCGCTTCATC
* * * * * *
20113741 GATTTGGTCTATTTCTCTGTATCTTATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCCTCATTGCTTTAACCCACTTCTC
*
20113806 TGTATCTCATCAGGAAGACG
66 TGTATCTCATCAAGAAGACG
* ** * * *
20113826 GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGATCGTTTTATTGCTTTGACCCACTTCTT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCCTCATTGCTTTAACCCACTTCTC
20113891 TGTATCTCATCAAGAAGA
66 TGTATCTCATCAAGAAGA
20113909 TGGGGGTTTG
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
85 70 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCCTCATTGCTTTAACCCACTTCTC
TGTATCTCATCAAGAAGACG
Found at i:20115123 original size:30 final size:29
Alignment explanation
Indices: 20115089--20115290 Score: 169
Period size: 30 Copynumber: 6.8 Consensus size: 29
20115079 TTTTAGGGCC
20115089 AAAATGTAATTTTAGGAAAGTTTGGGAGTT
1 AAAATGTAATTTTAGGAAAGTTTGGG-GTT
* *
20115119 AAAATGTAATTTT-GGAAAAATTAGGGGTT
1 AAAATGTAATTTTAGG-AAAGTTTGGGGTT
* *
20115148 AAAACT-TAATTTTTGGAAAGTTTAAGGGTT
1 AAAA-TGTAATTTTAGGAAAGTTT-GGGGTT
* *
20115178 GAAATGTAATTTCTA-GAAAGTTTAAGGGTT
1 AAAATGTAATTT-TAGGAAAGTTT-GGGGTT
* **
20115208 AAAATGTAATTTTTGGAAAGTTCAGGGTT
1 AAAATGTAATTTTAGGAAAGTTTGGGGTT
* * *
20115237 AAAATATATTTTTA-AAATAGTTTAGGGGTT
1 AAAATGTAATTTTAGGAA-AGTTT-GGGGTT
* * *
20115267 AAAATGTGATTTTGGGAATGTTTG
1 AAAATGTAATTTTAGGAAAGTTTG
20115291 AGGATGTAAG
Statistics
Matches: 140, Mismatches: 22, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
28 2 0.01
29 45 0.32
30 90 0.64
31 3 0.02
ACGTcount: A:0.37, C:0.01, G:0.23, T:0.39
Consensus pattern (29 bp):
AAAATGTAATTTTAGGAAAGTTTGGGGTT
Found at i:20115166 original size:59 final size:60
Alignment explanation
Indices: 20115089--20115289 Score: 189
Period size: 59 Copynumber: 3.4 Consensus size: 60
20115079 TTTTAGGGCC
* * * *
20115089 AAAATGTAATTTTAGGAAAGTTT-GGGAGTTAAAATGTAATTT-TGGAAAAATTAGGGGTT
1 AAAATGTAATTTTTGGAAAGTTTAAGG-GTTAAAATGTAATTTCTAGAAAAATTAAGGGTT
* **
20115148 AAAACT-TAATTTTTGGAAAGTTTAAGGGTTGAAATGTAATTTCTAGAAAGTTTAAGGGTT
1 AAAA-TGTAATTTTTGGAAAGTTTAAGGGTTAAAATGTAATTTCTAGAAAAATTAAGGGTT
* * * * *
20115208 AAAATGTAATTTTTGGAAAG-TTCAGGGTTAAAATAT-ATTTTTA-AAATAGTTTAGGGGTT
1 AAAATGTAATTTTTGGAAAGTTTAAGGGTTAAAATGTAATTTCTAGAAA-A-ATTAAGGGTT
* * *
20115267 AAAATGTGATTTTGGGAATGTTT
1 AAAATGTAATTTTTGGAAAGTTT
20115290 GAGGATGTAA
Statistics
Matches: 119, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
57 3 0.03
58 6 0.05
59 74 0.62
60 36 0.30
ACGTcount: A:0.37, C:0.01, G:0.23, T:0.39
Consensus pattern (60 bp):
AAAATGTAATTTTTGGAAAGTTTAAGGGTTAAAATGTAATTTCTAGAAAAATTAAGGGTT
Found at i:20115259 original size:89 final size:89
Alignment explanation
Indices: 20115089--20115294 Score: 226
Period size: 89 Copynumber: 2.3 Consensus size: 89
20115079 TTTTAGGGCC
*
20115089 AAAATGTAATTTTAGGAAAGTTTGGGAGTTAAAATGTAATTTTGGAAAAATTAGGGGTTAAAACT
1 AAAATGTAATTTTAGGAAAGTTTAGGAGTTAAAATGTAATTTTGGAAAAATTAGGGGTTAAAACT
**
20115154 TAATTTTTGGAAAGTTTAAGGGTT
66 TAATTTTTAAAAAGTTTAAGGGTT
* *
20115178 GAAATGTAATTTCTA-GAAAGTTTAAGG-GTTAAAATGTAATTTTTGG-AAAGTTCA-GGGTTAA
1 AAAATGTAATTT-TAGGAAAGTTT-AGGAGTTAAAATGTAA-TTTTGGAAAAATT-AGGGGTTAA
*
20115239 AA--TATATTTTTAAAATAGTTTAGGGGTT
62 AACTTA-ATTTTTAAAA-AGTTTAAGGGTT
* * *
20115267 AAAATGTGATTTTGGGAATGTTTGAGGA
1 AAAATGTAATTTTAGGAAAGTTT-AGGA
20115295 TGTAAGGGTT
Statistics
Matches: 98, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
87 2 0.02
88 9 0.09
89 76 0.78
90 11 0.11
ACGTcount: A:0.37, C:0.01, G:0.24, T:0.38
Consensus pattern (89 bp):
AAAATGTAATTTTAGGAAAGTTTAGGAGTTAAAATGTAATTTTGGAAAAATTAGGGGTTAAAACT
TAATTTTTAAAAAGTTTAAGGGTT
Found at i:20118389 original size:29 final size:30
Alignment explanation
Indices: 20118356--20118514 Score: 128
Period size: 29 Copynumber: 5.4 Consensus size: 30
20118346 TTTTGGAGCC
*
20118356 AAAATGTAATTTTGGGAAAGTTCAAAGGTT
1 AAAATGTAATTTTGGGAAAGTTTAAAGGTT
* * *
20118386 -AAATGTAATTTTGGAAAATTTTAAGGGTT
1 AAAATGTAATTTTGGGAAAGTTTAAAGGTT
* * *
20118415 GAAATGTAATTTTTGG-AAGTTTAGAGGTT
1 AAAATGTAATTTTGGGAAAGTTTAAAGGTT
* * * * **
20118444 AAAATGAAATTTTAGAAAACTTT-GGGGTT
1 AAAATGTAATTTTGGGAAAGTTTAAAGGTT
* * * *
20118473 GAAATGTGATTTTGGG-AAGTTTGAGGGTT
1 AAAATGTAATTTTGGGAAAGTTTAAAGGTT
*
20118502 AAAATGTGATTTT
1 AAAATGTAATTTT
20118515 AAAAAAGTTT
Statistics
Matches: 103, Mismatches: 23, Indels: 7
0.77 0.17 0.05
Matches are distributed among these distances:
28 5 0.05
29 80 0.78
30 18 0.17
ACGTcount: A:0.35, C:0.01, G:0.25, T:0.38
Consensus pattern (30 bp):
AAAATGTAATTTTGGGAAAGTTTAAAGGTT
Found at i:20118443 original size:58 final size:58
Alignment explanation
Indices: 20118357--20118520 Score: 197
Period size: 58 Copynumber: 2.8 Consensus size: 58
20118347 TTTGGAGCCA
* * * *
20118357 AAATGTAATTTTGGGAAAGTTCAAAGGTT-AAATGTAATTTTGGAAAATTTTAAGGGTTG
1 AAATGTAATTTTGGG-AAGTTTAGAGGTTAAAATGTAATTTTAGAAAACTTT-AGGGTTG
* * *
20118416 AAATGTAATTTTTGGAAGTTTAGAGGTTAAAATGAAATTTTAGAAAACTTTGGGGTTG
1 AAATGTAATTTTGGGAAGTTTAGAGGTTAAAATGTAATTTTAGAAAACTTTAGGGTTG
* * *
20118474 AAATGTGATTTTGGGAAGTTT-GAGGGTTAAAATGTGATTTTAAAAAA
1 AAATGTAATTTTGGGAAGTTTAGA-GGTTAAAATGTAATTTTAGAAAA
20118521 GTTTTTGGTC
Statistics
Matches: 91, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
57 2 0.02
58 56 0.62
59 33 0.36
ACGTcount: A:0.37, C:0.01, G:0.24, T:0.37
Consensus pattern (58 bp):
AAATGTAATTTTGGGAAGTTTAGAGGTTAAAATGTAATTTTAGAAAACTTTAGGGTTG
Found at i:20118544 original size:58 final size:59
Alignment explanation
Indices: 20118355--20118546 Score: 153
Period size: 58 Copynumber: 3.3 Consensus size: 59
20118345 ATTTTGGAGC
* * * ** * *
20118355 CAAAATGTAA-TTTTGGGAAAGTTCAAAGGTT-AAATGTAATTTTGGAAAATTTTAAGGGT
1 CAAAATGTAATTTTTGGG-AAGTTTAGAGGTTAAAATGAAATTTTAAAAAACTTT-GGGGT
** *
20118414 TGAAATGTAATTTTT-GGAAGTTTAGAGGTTAAAATGAAATTTTAGAAAACTTTGGGGT
1 CAAAATGTAATTTTTGGGAAGTTTAGAGGTTAAAATGAAATTTTAAAAAACTTTGGGGT
** * ** * **
20118472 TGAAATGTGA-TTTTGGGAAGTTT-GAGGGTTAAAATGTGATTTTAAAAAAGTTTTTGGT
1 CAAAATGTAATTTTTGGGAAGTTTAGA-GGTTAAAATGAAATTTTAAAAAACTTTGGGGT
20118530 CAAAATGT-ATTTTTGGG
1 CAAAATGTAATTTTTGGG
20118547 TAAAACATGG
Statistics
Matches: 111, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
57 7 0.06
58 71 0.64
59 29 0.26
60 4 0.04
ACGTcount: A:0.35, C:0.02, G:0.24, T:0.39
Consensus pattern (59 bp):
CAAAATGTAATTTTTGGGAAGTTTAGAGGTTAAAATGAAATTTTAAAAAACTTTGGGGT
Found at i:20118918 original size:7 final size:7
Alignment explanation
Indices: 20118908--20118947 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
20118898 GTTCTCCTCT
20118908 CTCTCCC
1 CTCTCCC
20118915 CTCTCCC
1 CTCTCCC
20118922 CTCTCCC
1 CTCTCCC
20118929 CTCTCCC
1 CTCTCCC
20118936 CTCTCCC
1 CTCTCCC
20118943 CTCTC
1 CTCTC
20118948 TCTTCTTCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.00, C:0.70, G:0.00, T:0.30
Consensus pattern (7 bp):
CTCTCCC
Found at i:20119304 original size:2 final size:2
Alignment explanation
Indices: 20119299--20119341 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
20119289 AATAAAAAAC
20119299 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20119341 T
1 T
20119342 GCATGTATGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20124576 original size:25 final size:26
Alignment explanation
Indices: 20124548--20124608 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
20124538 ATTTATTGGC
* *
20124548 AAAATTAAATAG-AACATTTAAGCAG
1 AAAATTAAATAGCAAAAATTAAGCAG
* *
20124573 AAAAGTAAAT-GCAAAAATTAAGCAT
1 AAAATTAAATAGCAAAAATTAAGCAG
*
20124598 AAAATAAAATA
1 AAAATTAAATA
20124609 TGAAATACGA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.62, C:0.07, G:0.10, T:0.21
Consensus pattern (26 bp):
AAAATTAAATAGCAAAAATTAAGCAG
Found at i:20124823 original size:30 final size:28
Alignment explanation
Indices: 20124735--20124885 Score: 135
Period size: 29 Copynumber: 5.2 Consensus size: 28
20124725 ATGGGGTTAA
20124735 AAAATG-AAGTTTT-GAAGAATTTAGGGTT
1 AAAATGTAA-TTTTGGAA-AATTTAGGGTT
* *
20124763 AAAATGTAATTTTGGGACAATTTTGGGTT
1 AAAATGTAATTTT-GGAAAATTTAGGGTT
* * *
20124792 AAAATGTGATTTTGGGAAGTTTGAGGGGTT
1 AAAATGTAATTTTGGAAAATTT-A-GGGTT
* *
20124822 AAAATGCAATTTTGGAAAAGTTTAGGGTC
1 AAAATGTAATTTTGGAAAA-TTTAGGGTT
* *
20124851 AAAGTGTAATTTTGGAAACATTCGAGGGTT
1 AAAATGTAATTTTGGAAA-ATT-TAGGGTT
20124881 AAAAT
1 AAAAT
20124886 ATGATTTTTA
Statistics
Matches: 98, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
28 16 0.16
29 46 0.47
30 33 0.34
31 3 0.03
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.35
Consensus pattern (28 bp):
AAAATGTAATTTTGGAAAATTTAGGGTT
Found at i:20124880 original size:59 final size:58
Alignment explanation
Indices: 20124757--20124885 Score: 143
Period size: 59 Copynumber: 2.2 Consensus size: 58
20124747 TGAAGAATTT
* * * * * * * *
20124757 AGGGTTAAAATGTAATTTTGGGACAATTTTGGGTTAAAATGTGATTTTGGGAAGTTTG
1 AGGGTTAAAATGCAATTTTGGGAAAATTTAGGGTCAAAATGTAATTTTGGAAAATTCG
*
20124815 AGGGGTTAAAATGCAATTTT-GGAAAAGTTTAGGGTCAAAGTGTAATTTTGGAAACATTCG
1 A-GGGTTAAAATGCAATTTTGGGAAAA-TTTAGGGTCAAAATGTAATTTTGGAAA-ATTCG
20124875 AGGGTTAAAAT
1 AGGGTTAAAAT
20124886 ATGATTTTTA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
58 6 0.10
59 49 0.83
60 4 0.07
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.35
Consensus pattern (58 bp):
AGGGTTAAAATGCAATTTTGGGAAAATTTAGGGTCAAAATGTAATTTTGGAAAATTCG
Found at i:20126292 original size:17 final size:17
Alignment explanation
Indices: 20126270--20126302 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
20126260 GTATTTGGGC
20126270 AATTTAAATTTAAAATA
1 AATTTAAATTTAAAATA
20126287 AATTTAAATTTAAAAT
1 AATTTAAATTTAAAAT
20126303 TGTATTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:20126950 original size:124 final size:124
Alignment explanation
Indices: 20126785--20127060 Score: 471
Period size: 124 Copynumber: 2.2 Consensus size: 124
20126775 GCTTCGACCA
* *
20126785 ACTTCTTTGTATCTCATCAGGAAGATGGGGTTTGAAAGTTTCACTCACATTGAGCTTCGCTTTAT
1 ACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAAGTTTCACTCACATTGAGCTTCGCTTCAT
* *
20126850 TGAATTGGTATACTTCTCTATATCTCATCAGGAAGATGAACGATTCATTATTTTAACTC
66 TGAATTGGTATACTTCTCTATATCTCATCAAGAAGATGAACGATTCATTATTTTAACCC
* * * * *
20126909 ACTTCTCTATATCTCATCAAGAAGATTGGGTTTGAAAGTTTCATTCACATTGAGTTTCGCTTCAT
1 ACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAAGTTTCACTCACATTGAGCTTCGCTTCAT
20126974 TGAATTGGTATACTTCTCTATATCTCATCAAGAAGATGAACGATTCATTATTTTAACCC
66 TGAATTGGTATACTTCTCTATATCTCATCAAGAAGATGAACGATTCATTATTTTAACCC
20127033 ACTTCTCTGTATCTCATCAGGAAGATGG
1 ACTTCTCTGTATCTCATCAGGAAGATGG
20127061 ATTTGGTTCA
Statistics
Matches: 140, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
124 140 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (124 bp):
ACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAAGTTTCACTCACATTGAGCTTCGCTTCAT
TGAATTGGTATACTTCTCTATATCTCATCAAGAAGATGAACGATTCATTATTTTAACCC
Found at i:20127159 original size:209 final size:209
Alignment explanation
Indices: 20126908--20127349 Score: 649
Period size: 209 Copynumber: 2.1 Consensus size: 209
20126898 TATTTTAACT
* * * * *
20126908 CACTTCTCTATATCTCATCAAGAAGATTGGGTTTGAAAGTTTCA-TTCACATTGAGT-TTCGCTT
1 CACTTCTCTGTATCTCATCAGGAACATAGGGTTTGAAAGTTTCACTT-ACATTGACTGTT-GCTT
*
20126971 CATTGAATTGGTATACTTCTCTATATCTCATCAAGAAGATGAACGA-TTCATTATTTTAACCCAC
64 CATTGAATTGGTATACTTCTCTATATCTCATCAAGAAGAT-AACCACTTCATTATTTTAACCCAC
* * * * * *
20127035 TTCTCTGTATCTCATCAGGAAGATGGATTTGGTTCACTTCTTTGTATCTCGTCAGGAAGATGGCC
128 TTCTCTATATCTCATCAGGAAGATGAATTTAGTTCACTTATCTGTATCTCGTCAGGAAGATGACC
20127100 ACTTTATTGCTAT-GACC
193 ACTTTATTGCT-TCGACC
*
20127117 CACTTCTCTGTATCTCATCAGGAACATAGGGTTTGGAAGTTTCACTTACATTGACTGTTGCTTCA
1 CACTTCTCTGTATCTCATCAGGAACATAGGGTTTGAAAGTTTCACTTACATTGACTGTTGCTTCA
* * * *
20127182 TTGAATTGGTCTACTTCTCTATATCTCATCAGGAAGATAACCACTTCATTGTTTTAATCCACTTC
66 TTGAATTGGTATACTTCTCTATATCTCATCAAGAAGATAACCACTTCATTATTTTAACCCACTTC
*
20127247 TCTATATCTCATCATGAAGATGAATTTAGTTCACTTATCTGTATCTCGTCAGGAAGATGACCACT
131 TCTATATCTCATCAGGAAGATGAATTTAGTTCACTTATCTGTATCTCGTCAGGAAGATGACCACT
20127312 TTATTGCTTCGACC
196 TTATTGCTTCGACC
*
20127326 CACTTCTCTGTATCTCATCGGGAA
1 CACTTCTCTGTATCTCATCAGGAA
20127350 GATGGAGTTT
Statistics
Matches: 210, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
208 5 0.02
209 201 0.96
210 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (209 bp):
CACTTCTCTGTATCTCATCAGGAACATAGGGTTTGAAAGTTTCACTTACATTGACTGTTGCTTCA
TTGAATTGGTATACTTCTCTATATCTCATCAAGAAGATAACCACTTCATTATTTTAACCCACTTC
TCTATATCTCATCAGGAAGATGAATTTAGTTCACTTATCTGTATCTCGTCAGGAAGATGACCACT
TTATTGCTTCGACC
Found at i:20127303 original size:85 final size:85
Alignment explanation
Indices: 20127194--20127353 Score: 212
Period size: 85 Copynumber: 1.9 Consensus size: 85
20127184 GAATTGGTCT
* * * *
20127194 ACTTCTCTATATCTCATCAGGAAGATAACCACTTCATTGTTTTAATCCACTTCTCTATATCTCAT
1 ACTTATCTATATCTCATCAGGAAGATAACCACTTCATTGCTTCAACCCACTTCTCTATATCTCAT
*
20127259 CATGAAGATGAATTTAGTTC
66 CAGGAAGATGAATTTAGTTC
* * * * * *
20127279 ACTTATCTGTATCTCGTCAGGAAGATGACCACTTTATTGCTTCGACCCACTTCTCTGTATCTCAT
1 ACTTATCTATATCTCATCAGGAAGATAACCACTTCATTGCTTCAACCCACTTCTCTATATCTCAT
*
20127344 CGGGAAGATG
66 CAGGAAGATG
20127354 GAGTTTGATC
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
85 63 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (85 bp):
ACTTATCTATATCTCATCAGGAAGATAACCACTTCATTGCTTCAACCCACTTCTCTATATCTCAT
CAGGAAGATGAATTTAGTTC
Found at i:20138855 original size:24 final size:23
Alignment explanation
Indices: 20138825--20138875 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 23
20138815 TTTATTTCTT
20138825 TTATTTAATATTAATAT-TTATTTA
1 TTATTT-AT-TTAATATATTATTTA
20138849 TTATTTATTTAATATACTTATTTA
1 TTATTTATTTAATATA-TTATTTA
20138873 TTA
1 TTA
20138876 CGTTTTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.28
23 2 0.08
24 16 0.64
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (23 bp):
TTATTTATTTAATATATTATTTA
Found at i:20139763 original size:27 final size:25
Alignment explanation
Indices: 20139712--20139765 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
20139702 AAATTTAAAT
*
20139712 TTTTATAGATTTTAATAATTAATAA
1 TTTTATAGATTTTAATAAATAATAA
* *
20139737 TTTTATATATTTATTATAAATATATAA
1 TTTTATAGATTT-TAATAAATA-ATAA
20139764 TT
1 TT
20139766 ATAGTATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 11 0.46
26 7 0.29
27 6 0.25
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
TTTTATAGATTTTAATAAATAATAA
Found at i:20149544 original size:3 final size:3
Alignment explanation
Indices: 20149536--20149585 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
20149526 GCTTGCCATT
20149536 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
20149584 AA
1 AA
20149586 ATGAAAATGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:20155608 original size:29 final size:29
Alignment explanation
Indices: 20155575--20155911 Score: 158
Period size: 29 Copynumber: 11.6 Consensus size: 29
20155565 CCCTAAACCA
*
20155575 TCCAAAAATTATATTTTGACCCTCGAACT
1 TCCAAAAATTACATTTTGACCCTCGAACT
* *
20155604 TCCAAAAATCTTA-TTTTTGACCC-CAAAGCT
1 TCCAAAAA--TTACATTTTGACCCTCGAA-CT
** * *
20155634 TCTGAAAATTACATTTTTACCC-CAAAACT
1 TCCAAAAATTACATTTTGACCCTC-GAACT
** * *
20155663 TCCAAAAATCCCATTTTAACCC-CAAAACT
1 TCCAAAAATTACATTTTGACCCTC-GAACT
* * *
20155692 TCCAAAAATTACATTTTTAACTTCGAACT
1 TCCAAAAATTACATTTTGACCCTCGAACT
** * **
20155721 TTTAAAAATTCCATTTTGA-CCTCGATTT
1 TCCAAAAATTACATTTTGACCCTCGAACT
*
20155749 TCCCAAAATTTACCATTTT-ACCCTCGAACT
1 T-CCAAAAATTA-CATTTTGACCCTCGAACT
* * ** * **
20155779 TCTAAAAATT-CTATTTTCAATCTTGATTT
1 TCCAAAAATTAC-ATTTTGACCCTCGAACT
* *
20155808 TCCAAAAATTACCATTTT-ACCTTCGGACT
1 TCCAAAAATTA-CATTTTGACCCTCGAACT
* *
20155837 TCCAAAAATTCCATTTTAACCCT--AATTCT
1 TCCAAAAATTACATTTTGACCCTCGAA--CT
* * *
20155866 TCCCAAAATTACCATTTT-ACCC-CCAAAT
1 TCCAAAAATTA-CATTTTGACCCTCGAACT
*
20155894 GTCCAAAAATTTCATTTT
1 -TCCAAAAATTACATTTT
20155912 TGATCCCGAT
Statistics
Matches: 235, Mismatches: 53, Indels: 41
0.71 0.16 0.12
Matches are distributed among these distances:
27 2 0.01
28 28 0.12
29 153 0.65
30 48 0.20
31 4 0.02
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36
Consensus pattern (29 bp):
TCCAAAAATTACATTTTGACCCTCGAACT
Found at i:20155721 original size:58 final size:59
Alignment explanation
Indices: 20155575--20155911 Score: 237
Period size: 58 Copynumber: 5.8 Consensus size: 59
20155565 CCCTAAACCA
* * * * *
20155575 TCCAAAAATTA-TATTTTGACCCTCGAACTTCCAAAAA-TCTTATTTTTGACCCCAAAGCT
1 TCCAAAAATTACCATTTTTACCCTCGAACTTCCAAAAATTC-CA-TTTTAACCCCAAATCT
** * * *
20155634 TCTGAAAATTA-CATTTTTACCC-CAAAACTTCCAAAAATCCCATTTTAACCCCAAAACT
1 TCCAAAAATTACCATTTTTACCCTC-GAACTTCCAAAAATTCCATTTTAACCCCAAATCT
* * ** * * * *
20155692 TCCAAAAATTA-CATTTTTAACTTCGAACTTTTAAAAATTCCATTTTGACCTC-GATTT
1 TCCAAAAATTACCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTAACCCCAAATCT
* * * * *** *
20155749 TCCCAAAATTTACCA-TTTTACCCTCGAACTTCTAAAAATTCTATTTTCAA-TCTTGATTT
1 T-CCAAAAATTACCATTTTTACCCTCGAACTTCCAAAAATTCCATTTT-AACCCCAAATCT
* * * *
20155808 TCCAAAAATTACCA-TTTTACCTTCGGACTTCCAAAAATTCCATTTTAACCCTAATTCT
1 TCCAAAAATTACCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTAACCCCAAATCT
* * * *
20155866 TCCCAAAATTACCA-TTTTACCC-CCAAATGTCCAAAAATTTCATTTT
1 TCCAAAAATTACCATTTTTACCCTCGAACT-TCCAAAAATTCCATTTT
20155912 TGATCCCGAT
Statistics
Matches: 222, Mismatches: 47, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
57 8 0.04
58 172 0.77
59 41 0.18
60 1 0.00
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36
Consensus pattern (59 bp):
TCCAAAAATTACCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTAACCCCAAATCT
Found at i:20155902 original size:116 final size:117
Alignment explanation
Indices: 20155691--20155951 Score: 300
Period size: 116 Copynumber: 2.2 Consensus size: 117
20155681 ACCCCAAAAC
* * ** * *
20155691 TTCCAAAAATTA-CATTTTTAACTTCGAACTTTTAAAAATTCCATTTTGACCTCGATTTTCCCAA
1 TTCCAAAAATTACCA-TTTTACCTTCGGACTTCCAAAAATTCCATTTTAACCTCAATTTTCCCAA
* * * **
20155755 AATTTACCATTTTACCCTCGAACTTCTAAAAA-TTCTATTTTCAATCTTGA-TT
65 AATTTACCATTTTACCCTCCAAATTCCAAAAATTTC-ATTTTCAATCCCGATTT
20155807 TTCCAAAAATTACCATTTTACCTTCGGACTTCCAAAAATTCCATTTTAACC-CTAATTCTTCCCA
1 TTCCAAAAATTACCATTTTACCTTCGGACTTCCAAAAATTCCATTTTAACCTC-AATT-TTCCCA
**
20155871 AAA-TTACCATTTTACCC-CCAAATGTCCAAAAATTTCATTTTTGATCCCGATTT
64 AAATTTACCATTTTACCCTCCAAAT-TCCAAAAATTTCATTTTCAATCCCGATTT
* *
20155924 TTCTAAAAATTACCGTTTTACCTTCGGA
1 TTCCAAAAATTACCATTTTACCTTCGGA
20155952 TGTCTAAAAT
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
115 5 0.04
116 77 0.62
117 42 0.34
ACGTcount: A:0.31, C:0.24, G:0.05, T:0.39
Consensus pattern (117 bp):
TTCCAAAAATTACCATTTTACCTTCGGACTTCCAAAAATTCCATTTTAACCTCAATTTTCCCAAA
ATTTACCATTTTACCCTCCAAATTCCAAAAATTTCATTTTCAATCCCGATTT
Found at i:20155955 original size:59 final size:59
Alignment explanation
Indices: 20155745--20156018 Score: 188
Period size: 58 Copynumber: 4.7 Consensus size: 59
20155735 TTTGACCTCG
* * * * * * * * *
20155745 ATTTTCCCAAAATTTACCATTTTACCCTCGAACT-TCTAAAAA-TTCTATTTTCAATCTTG
1 ATTTTTCCAAAAATTACCATTTTACCTTCGGA-TGTCCAAAAATTTC-ATTTTTAACCCTA
*
20155804 A-TTTTCCAAAAATTACCATTTTACCTTCGGACT-TCCAAAAATTCCA-TTTTAACCCTA
1 ATTTTTCCAAAAATTACCATTTTACCTTCGGA-TGTCCAAAAATTTCATTTTTAACCCTA
* * ** ** * *
20155861 ATTCTTCCCAAAATTACCATTTTACCCCCAAATGTCCAAAAATTTCATTTTTGATCCC-G
1 ATTTTTCCAAAAATTACCATTTTACCTTCGGATGTCCAAAAATTTCATTTTT-AACCCTA
* * * * * *
20155920 ATTTTTCTAAAAATTACCGTTTTACCTTCGGATGT-CTAAAATGTCATTTTTAACACAA
1 ATTTTTCCAAAAATTACCATTTTACCTTCGGATGTCCAAAAATTTCATTTTTAACCCTA
* * *
20155978 AATTTTCTC-AAAATTACCATTTTGCC-TCCGATAGTCCAAAA
1 ATTTTTC-CAAAAATTACCATTTTACCTTCGGAT-GTCCAAAA
20156019 TTACCATTTT
Statistics
Matches: 168, Mismatches: 38, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
57 17 0.10
58 109 0.65
59 38 0.23
60 4 0.02
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.38
Consensus pattern (59 bp):
ATTTTTCCAAAAATTACCATTTTACCTTCGGATGTCCAAAAATTTCATTTTTAACCCTA
Found at i:20156018 original size:117 final size:117
Alignment explanation
Indices: 20155691--20156000 Score: 296
Period size: 116 Copynumber: 2.7 Consensus size: 117
20155681 ACCCCAAAAC
* * ** * ***
20155691 TTCCAAAAATTA-CATTTTTAACTTCGAACTTTTAAAAATTCCATTTTGACCTCGATT-TTCCCA
1 TTCCAAAAATTACCA-TTTTACCTTCGGACTTCCAAAAATTCCATTTTAACCAAAATTCTTCCCA
* * * ** **
20155754 AAATTTACCATTTTACCCTCGAACT-TCTAAAAA-TTCTATTTTCAATCTTGA-TT
65 AAA-TTACCATTTTACCC-CCAAATGTCCAAAAATTTC-ATTTTTGATCCCGATTT
**
20155807 TTCCAAAAATTACCATTTTACCTTCGGACTTCCAAAAATTCCATTTTAACCCTAATTCTTCCCAA
1 TTCCAAAAATTACCATTTTACCTTCGGACTTCCAAAAATTCCATTTTAACCAAAATTCTTCCCAA
20155872 AATTACCATTTTACCCCCAAATGTCCAAAAATTTCATTTTTGATCCCGATTT
66 AATTACCATTTTACCCCCAAATGTCCAAAAATTTCATTTTTGATCCCGATTT
* * *
20155924 TTCTAAAAATTACCGTTTTACCTTCGGA-TGT-CTAAAATGT-CATTTTTAACACAAAATT-TTC
1 TTCCAAAAATTACCATTTTACCTTCGGACT-TCCAAAAAT-TCCA-TTTTAAC-CAAAATTCTTC
*
20155985 TCAAAATTACCATTTT
62 CCAAAATTACCATTTT
20156001 GCCTCCGATA
Statistics
Matches: 164, Mismatches: 21, Indels: 17
0.81 0.10 0.08
Matches are distributed among these distances:
115 4 0.02
116 86 0.52
117 69 0.42
118 5 0.03
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (117 bp):
TTCCAAAAATTACCATTTTACCTTCGGACTTCCAAAAATTCCATTTTAACCAAAATTCTTCCCAA
AATTACCATTTTACCCCCAAATGTCCAAAAATTTCATTTTTGATCCCGATTT
Found at i:20156949 original size:22 final size:22
Alignment explanation
Indices: 20156923--20156966 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
20156913 TTTATTATAA
20156923 AAATAACTACTACTACATAAAT
1 AAATAACTACTACTACATAAAT
20156945 AAATAACTACTACTACATAAAT
1 AAATAACTACTACTACATAAAT
20156967 TTTCTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (22 bp):
AAATAACTACTACTACATAAAT
Found at i:20157937 original size:21 final size:22
Alignment explanation
Indices: 20157912--20157953 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
20157902 ATCAGGTAAA
* *
20157912 ATTAAAATTAA-AACTTAAAAG
1 ATTAAAAATAATAACATAAAAG
20157933 ATTAAAAATAATAACATAAAA
1 ATTAAAAATAATAACATAAAA
20157954 TAAATAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (22 bp):
ATTAAAAATAATAACATAAAAG
Found at i:20160631 original size:90 final size:88
Alignment explanation
Indices: 20160465--20160708 Score: 294
Period size: 90 Copynumber: 2.8 Consensus size: 88
20160455 TTAGGGGCGA
* * * *
20160465 TTCAAGTACCCAATTGAGTGCAAA-ACAATCAAGGGCTTAA-TAGCTTTTTCGAAAACGTTTGAG
1 TTCAAGTACCCAATTGAGTGCAAATAAAAGCAAGGGCTTAATTA-CTTTTTTGAAAAAGTTTGAG
* * *
20160528 GGTTTTTTTGATGCATTTTGAAAG
65 GGTCTTCTCGATGCATTTTGAAAG
* * **
20160552 TTTAAGTACCCAATTGAGTGCAATATAAAAGCAGGGGCTTAATTTTTTTTTTTGAAAAAGTTTGA
1 TTCAAGTACCCAATTGAGTGCAA-ATAAAAGCAAGGGCTTAA-TTACTTTTTTGAAAAAGTTTGA
20160617 GGGTCTTCTCGATGCATTTTGAAAG
64 GGGTCTTCTCGATGCATTTTGAAAG
* * * * *
20160642 TTCAAGTATCCAAGTGAGTGAAAAATAAAAGCAAAGGCTTAATTACTTTTTTGAAAATGTTTGAG
1 TTCAAGTACCCAATTGAGTG-CAAATAAAAGCAAGGGCTTAATTACTTTTTTGAAAAAGTTTGAG
20160707 GG
65 GG
20160709 CTTTTTACAC
Statistics
Matches: 132, Mismatches: 20, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
87 22 0.17
88 1 0.01
89 35 0.27
90 71 0.54
91 3 0.02
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.35
Consensus pattern (88 bp):
TTCAAGTACCCAATTGAGTGCAAATAAAAGCAAGGGCTTAATTACTTTTTTGAAAAAGTTTGAGG
GTCTTCTCGATGCATTTTGAAAG
Found at i:20162017 original size:4 final size:4
Alignment explanation
Indices: 20162008--20162054 Score: 85
Period size: 4 Copynumber: 11.8 Consensus size: 4
20161998 TAATAAAGGT
*
20162008 TAAG TAAG TAAG CAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAA
1 TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAA
20162055 TAATAATAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.51, C:0.02, G:0.23, T:0.23
Consensus pattern (4 bp):
TAAG
Found at i:20163657 original size:38 final size:37
Alignment explanation
Indices: 20163557--20163660 Score: 145
Period size: 38 Copynumber: 2.8 Consensus size: 37
20163547 AGATTGTACG
* * *
20163557 GTGTTTATCGGGCTTTGTGCCTAGCAGAGCATGTGCCG
1 GTGTTTATCAGGCTTTGTGCCTAGTAG-GCATGTGCCA
* *
20163595 GTGTTTATTAGGCTTTGTGCCTAGTAGGCTATGTTCCA
1 GTGTTTATCAGGCTTTGTGCCTAGTAGGC-ATGTGCCA
20163633 GTGTTTATCAGGCTTTGTGCCTAGTAGG
1 GTGTTTATCAGGCTTTGTGCCTAGTAGG
20163661 TTTCGTGCTG
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
37 2 0.03
38 57 0.97
ACGTcount: A:0.14, C:0.17, G:0.31, T:0.38
Consensus pattern (37 bp):
GTGTTTATCAGGCTTTGTGCCTAGTAGGCATGTGCCA
Found at i:20163679 original size:38 final size:37
Alignment explanation
Indices: 20163555--20163680 Score: 144
Period size: 38 Copynumber: 3.3 Consensus size: 37
20163545 AAAGATTGTA
* * *
20163555 CGGTGTTTATCGGGCTTTGTGCCTAGCAGAGCATGTGC
1 CGGTGTTTATCAGGCTTTGTGCCTAGTAG-GTATGTGC
* *
20163593 CGGTGTTTATTAGGCTTTGTGCCTAGTAGGCTATGTTC
1 CGGTGTTTATCAGGCTTTGTGCCTAGTAGG-TATGTGC
* *
20163631 CAGTGTTTATCAGGCTTTGTGCCTAGTAGGTTTCGTGC
1 CGGTGTTTATCAGGCTTTGTGCCTAGTAGGTAT-GTGC
* *
20163669 TGGTGGTTATCA
1 CGGTGTTTATCA
20163681 ATTTAATGTC
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
37 3 0.04
38 71 0.96
ACGTcount: A:0.13, C:0.17, G:0.31, T:0.38
Consensus pattern (37 bp):
CGGTGTTTATCAGGCTTTGTGCCTAGTAGGTATGTGC
Found at i:20172308 original size:24 final size:24
Alignment explanation
Indices: 20172280--20172326 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
20172270 TATATTTTAG
* * *
20172280 AATTTTTATATTTTTTTAAATATA
1 AATTTTGAAATTTTTATAAATATA
20172304 AATTTTGAAATTTTTATAAATAT
1 AATTTTGAAATTTTTATAAATAT
20172327 TTTAAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
AATTTTGAAATTTTTATAAATATA
Found at i:20172335 original size:19 final size:19
Alignment explanation
Indices: 20172300--20172356 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 19
20172290 TTTTTTTAAA
*
20172300 TATAAAT-TTTGAAATTTT
1 TATAAATATTTTAAATTTT
20172318 TATAAATATTTTAAA-TTT
1 TATAAATATTTTAAATTTT
* *
20172336 TAAAAATTATTTTGAATTTT
1 TATAAA-TATTTTAAATTTT
20172356 T
1 T
20172357 TTTGCAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 15 0.45
19 14 0.42
20 4 0.12
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (19 bp):
TATAAATATTTTAAATTTT
Found at i:20172337 original size:18 final size:18
Alignment explanation
Indices: 20172300--20172355 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 18
20172290 TTTTTTTAAA
*
20172300 TATAAAT-TTTGAAATTTT
1 TATAAATATTTTAAA-TTT
20172318 TATAAATATTTTAAATTT
1 TATAAATATTTTAAATTT
* *
20172336 TAAAAATTATTTTGAATTT
1 TATAAA-TATTTTAAATTT
20172355 T
1 T
20172356 TTTTGCAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (18 bp):
TATAAATATTTTAAATTT
Found at i:20178983 original size:9 final size:9
Alignment explanation
Indices: 20178947--20179098 Score: 55
Period size: 10 Copynumber: 16.4 Consensus size: 9
20178937 ACATGTGACA
*
20178947 AAAAATGAT
1 AAAAATTAT
*
20178956 AAAAAATAAT
1 -AAAAATTAT
*
20178966 AAAAGTTAT
1 AAAAATTAT
20178975 AAAAATTAT
1 AAAAATTAT
* *
20178984 -TAAATTTT
1 AAAAATTAT
*
20178992 AATAA--A-
1 AAAAATTAT
20178998 AAAAATTAT
1 AAAAATTAT
*
20179007 AAAAAATATTT
1 -AAAAAT-TAT
**
20179018 AAATTTTATT
1 AAAAATTA-T
* *
20179028 ACAAATTAGA
1 AAAAATTA-T
20179038 AAAAATTAT
1 AAAAATTAT
20179047 AAAAATCGTA-
1 AAAAAT--TAT
20179057 AAAAATTAT
1 AAAAATTAT
20179066 -AAAATATAT
1 AAAAAT-TAT
* *
20179075 AGAAATATAGA
1 AAAAAT-TA-T
20179086 AAAAATTAT
1 AAAAATTAT
20179095 AAAA
1 AAAA
20179099 TTTTATAAAG
Statistics
Matches: 104, Mismatches: 25, Indels: 27
0.67 0.16 0.17
Matches are distributed among these distances:
6 4 0.04
8 14 0.13
9 31 0.30
10 46 0.44
11 9 0.09
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:20179007 original size:32 final size:33
Alignment explanation
Indices: 20178960--20179025 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
20178950 AATGATAAAA
* * *
20178960 AATAATAAAAGTTATAAAAATTA-TTAAATTTT
1 AATAAAAAAAATTATAAAAAATATTTAAATTTT
20178992 AATAAAAAAAATTATAAAAAATATTTAAATTTT
1 AATAAAAAAAATTATAAAAAATATTTAAATTTT
20179025 A
1 A
20179026 TTACAAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 20 0.67
33 10 0.33
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (33 bp):
AATAAAAAAAATTATAAAAAATATTTAAATTTT
Found at i:20179059 original size:19 final size:18
Alignment explanation
Indices: 20179037--20179167 Score: 79
Period size: 19 Copynumber: 6.9 Consensus size: 18
20179027 TACAAATTAG
20179037 AAAAAATTATAAAAATCGT
1 AAAAAATTATAAAAAT-GT
*
20179056 AAAAAATTAT-AAAATAT
1 AAAAAATTATAAAAATGT
* *
20179073 ATAGAAATATAGAAAAAAT-T
1 A-AAAAAT-TA-TAAAAATGT
* **
20179093 ATAAAATTTTATAAAGTTGT
1 A-AAAA-ATTATAAAAATGT
20179113 AAGAAAATTATAGAAAATGT
1 AA-AAAATTATA-AAAATGT
*
20179133 AAAGAAA-TATAAAATTCGT
1 AAA-AAATTATAAAAAT-GT
*
20179152 AAAAAAATATAAAAAT
1 AAAAAATTATAAAAAT
20179168 TATCATACTA
Statistics
Matches: 88, Mismatches: 13, Indels: 22
0.72 0.11 0.18
Matches are distributed among these distances:
17 2 0.02
18 17 0.19
19 40 0.45
20 23 0.26
21 6 0.07
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.28
Consensus pattern (18 bp):
AAAAAATTATAAAAATGT
Found at i:20179184 original size:17 final size:17
Alignment explanation
Indices: 20179162--20179197 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
20179152 AAAAAAATAT
*
20179162 AAAAATTATCATACTAA
1 AAAAATTACCATACTAA
*
20179179 AAAAATTACCGTACTAA
1 AAAAATTACCATACTAA
20179196 AA
1 AA
20179198 GAAACATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.58, C:0.14, G:0.03, T:0.25
Consensus pattern (17 bp):
AAAAATTACCATACTAA
Found at i:20179386 original size:19 final size:19
Alignment explanation
Indices: 20179364--20179420 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
20179354 TTATAATTTT
20179364 TTTATAATTTTTATAAAAG
1 TTTATAATTTTTATAAAAG
* *
20179383 TTTACAATTTTT-TAAAATAT
1 TTTATAATTTTTAT-AAA-AG
*
20179403 TTTATGATTTTTATAAAA
1 TTTATAATTTTTATAAAA
20179421 AAATAGGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 15 0.48
20 14 0.45
21 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (19 bp):
TTTATAATTTTTATAAAAG
Found at i:20179820 original size:93 final size:92
Alignment explanation
Indices: 20179634--20179839 Score: 226
Period size: 93 Copynumber: 2.3 Consensus size: 92
20179624 AATTAGGGAT
* ** * *
20179634 TTAATTA--TTTTTTTTGAAAAAGTTCGAGAGTCTTTTTTATGCATTTTGAAAATTTAAGTATCC
1 TTAATTACTTTTTTTTTGAAAAAATTCGAGAGTCTTTTCGATGCATCTTGAAAATTCAAGTATCC
* * * *
20179697 AATTGAGTGCAAAAAAAGTGTTAGGGC
66 AATTGAGTGCAAAAAAAGAGTAAAGAC
* * * *
20179724 TTAATTGCTTTTTTTTTGGAAAAAATTTGAGGGTCTTTTCGATGCATCTT-AATAGTTCAAGTAT
1 TTAATTACTTTTTTTTT-GAAAAAATTCGAGAGTCTTTTCGATGCATCTTGAA-AATTCAAGTAT
20179788 CCAATTGAGTGCAAAAAGAA-AGTAAAGAC
64 CCAATTGAGTGCAAAAA-AAGAGTAAAGAC
20179817 TTAATTAC--TTTTTTTGAAAAAAT
1 TTAATTACTTTTTTTTTGAAAAAAT
20179840 ATGAGGACTT
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
90 14 0.14
91 7 0.07
92 10 0.10
93 64 0.66
94 2 0.02
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (92 bp):
TTAATTACTTTTTTTTTGAAAAAATTCGAGAGTCTTTTCGATGCATCTTGAAAATTCAAGTATCC
AATTGAGTGCAAAAAAAGAGTAAAGAC
Found at i:20204958 original size:43 final size:43
Alignment explanation
Indices: 20204893--20205147 Score: 323
Period size: 43 Copynumber: 5.9 Consensus size: 43
20204883 ATTTGCATAT
* *
20204893 TGAATGGAACACTGTTTCCTAGTATTGAAAGTATGTGATCGAT
1 TGAATGGAACACTATTTCCTAGTATTGAAAGTATGTGATCGAA
** *
20204936 TGTGTGGAACACTGTTTCCTAGTATTGAAAGTATGTGATC-AA
1 TGAATGGAACACTATTTCCTAGTATTGAAAGTATGTGATCGAA
**
20204978 TTGTGTGGAACACTATTTCCTAGTATTGAAAGTATGTGATCGAA
1 -TGAATGGAACACTATTTCCTAGTATTGAAAGTATGTGATCGAA
20205022 TGAATGGAACACTATTTCCTAGTATTGAAAGTATGTGATCGAA
1 TGAATGGAACACTATTTCCTAGTATTGAAAGTATGTGATCGAA
* * * * *
20205065 TGAATGGAACATTATTTCCTAGTATTGAAAATAAGTGTTCAAA
1 TGAATGGAACACTATTTCCTAGTATTGAAAGTATGTGATCGAA
* * * * * *
20205108 TGAATAGAATACTGTTTCCTAATAATTGATAGTATTTGAT
1 TGAATGGAACACTATTTCCTAGT-ATTGAAAGTATGTGAT
20205148 TGATTAAGAG
Statistics
Matches: 188, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
42 1 0.01
43 174 0.93
44 13 0.07
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (43 bp):
TGAATGGAACACTATTTCCTAGTATTGAAAGTATGTGATCGAA
Found at i:20205400 original size:28 final size:28
Alignment explanation
Indices: 20205343--20205401 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
20205333 TATAGAGGGG
* **
20205343 ATTGACGATCTTTATTACATTATTTTTT
1 ATTGACGATCTCTATTACATTATTCATT
* *
20205371 ATTGGCGATCTCTATTGCATTATTCATT
1 ATTGACGATCTCTATTACATTATTCATT
20205399 ATT
1 ATT
20205402 CGATGAACTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.24, C:0.14, G:0.10, T:0.53
Consensus pattern (28 bp):
ATTGACGATCTCTATTACATTATTCATT
Found at i:20218084 original size:43 final size:43
Alignment explanation
Indices: 20217968--20218089 Score: 172
Period size: 43 Copynumber: 2.8 Consensus size: 43
20217958 GATGATTGAA
* * *
20217968 TGGAACACTGTTTCCTAGTATTGAAAGTATATAATCGATTGTG
1 TGGAACACTGTTTCCTAGTATTGAAAGTATGTGATCAATTGTG
20218011 TGGAACACTGTTTCCTAGTATTGAAAGTATGTGATCAATTGTG
1 TGGAACACTGTTTCCTAGTATTGAAAGTATGTGATCAATTGTG
* * * * *
20218054 TGGAACGCTATTTCTTAATATTGGAAGTATGTGATC
1 TGGAACACTGTTTCCTAGTATTGAAAGTATGTGATC
20218090 GAATGAATGG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (43 bp):
TGGAACACTGTTTCCTAGTATTGAAAGTATGTGATCAATTGTG
Found at i:20218101 original size:43 final size:43
Alignment explanation
Indices: 20217964--20218101 Score: 152
Period size: 43 Copynumber: 3.2 Consensus size: 43
20217954 ATTTGATGAT
* * *
20217964 TGAATGGAACACTGTTTCCTAGTATTGAAAGTATATAATCGAT
1 TGAATGGAACACTGTTTCCTAGTATTGAAAGTATGTGATCGAA
**
20218007 TGTGTGGAACACTGTTTCCTAGTATTGAAAGTATGTGATC-AA
1 TGAATGGAACACTGTTTCCTAGTATTGAAAGTATGTGATCGAA
** * * * * *
20218049 TTGTGTGGAACGCTATTTCTTAATATTGGAAGTATGTGATCGAA
1 -TGAATGGAACACTGTTTCCTAGTATTGAAAGTATGTGATCGAA
20218093 TGAATGGAA
1 TGAATGGAA
20218102 TATTGTTCCC
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.01
43 78 0.96
44 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (43 bp):
TGAATGGAACACTGTTTCCTAGTATTGAAAGTATGTGATCGAA
Found at i:20218372 original size:28 final size:28
Alignment explanation
Indices: 20218329--20218387 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
20218319 TATCGAGGGG
* * * *
20218329 ATTGGCGATCTTTATCGCATTATTTGTT
1 ATTGGCAATCTCTATCACATCATTTGTT
20218357 ATTGGCAATCTCTATCACATCATTTGTT
1 ATTGGCAATCTCTATCACATCATTTGTT
20218385 ATT
1 ATT
20218388 CGACAAACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.14, T:0.47
Consensus pattern (28 bp):
ATTGGCAATCTCTATCACATCATTTGTT
Found at i:20226300 original size:20 final size:20
Alignment explanation
Indices: 20226271--20226308 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
20226261 TTTTTTATTG
*
20226271 TCTTTATCTTGGTTCTCTAT
1 TCTTTATCTTGGCTCTCTAT
*
20226291 TCTTTGTCTTGGCTCTCT
1 TCTTTATCTTGGCTCTCT
20226309 GTTTCTTCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.24, G:0.13, T:0.58
Consensus pattern (20 bp):
TCTTTATCTTGGCTCTCTAT
Found at i:20226683 original size:23 final size:22
Alignment explanation
Indices: 20226656--20226705 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
20226646 TCAAAATTAA
* *
20226656 TATTTTTGTATTTATTATTTTTT
1 TATTTTTGGATTTAGT-TTTTTT
*
20226679 TATTTTTGGATTTGGTTTTTTT
1 TATTTTTGGATTTAGTTTTTTT
20226701 TATTT
1 TATTT
20226706 GGTTGGGCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (22 bp):
TATTTTTGGATTTAGTTTTTTT
Found at i:20228614 original size:26 final size:26
Alignment explanation
Indices: 20228576--20228625 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20228566 GGTTAATTAG
*
20228576 ATTTCTTTAAAAAAAATCTCTCATAC
1 ATTTCTTTAAAAAAAATCACTCATAC
*
20228602 ATTTCTTTTAAAAAAATCACTCAT
1 ATTTCTTTAAAAAAAATCACTCAT
20228626 GCATAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (26 bp):
ATTTCTTTAAAAAAAATCACTCATAC
Found at i:20229170 original size:18 final size:20
Alignment explanation
Indices: 20229132--20229170 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
20229122 TAATTGTGTT
20229132 TTTATATGATATGATTATTG
1 TTTATATGATATGATTATTG
*
20229152 TTTATA-GATGTGA-TATTG
1 TTTATATGATATGATTATTG
20229170 T
1 T
20229171 AGATAGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 6 0.33
20 6 0.33
ACGTcount: A:0.28, C:0.00, G:0.18, T:0.54
Consensus pattern (20 bp):
TTTATATGATATGATTATTG
Found at i:20234523 original size:39 final size:40
Alignment explanation
Indices: 20234466--20234570 Score: 149
Period size: 40 Copynumber: 2.6 Consensus size: 40
20234456 TATAACTTTG
*
20234466 GGGGTAAAAGATTAGATTGT-TTCAACCCGCCCCATGGTC
1 GGGGTAAGAGATTAGATTGTCTTCAACCCGCCCCATGGTC
* * *
20234505 GGGGTAAGAGATTGGATTGTCTTCAACCTGCCCCATGGTT
1 GGGGTAAGAGATTAGATTGTCTTCAACCCGCCCCATGGTC
* *
20234545 GGGGCAAGATATTAGATTGTCTTCAA
1 GGGGTAAGAGATTAGATTGTCTTCAA
20234571 TCTGCCCTCT
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
39 18 0.31
40 40 0.69
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (40 bp):
GGGGTAAGAGATTAGATTGTCTTCAACCCGCCCCATGGTC
Found at i:20234590 original size:80 final size:80
Alignment explanation
Indices: 20234506--20234959 Score: 617
Period size: 80 Copynumber: 5.7 Consensus size: 80
20234496 CCCATGGTCG
* * * * * * * * *
20234506 GGGTAAGAGATTGGATTGTCTTCAACCTGCCCCATGGTTGGGGCAAGATATTAGATTGTCTTCAA
1 GGGTAAAAGATTGGATT-TCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGATAGTCTTCAA
*
20234571 TC-TGCCCTCT-GATTA
65 TCTTGCCCTTTAG-TTA
* * *
20234586 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGA-CTGGGGTAAAAGATCGGATGGTATTCAA
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATC-GGGGTAAAAGATTGGATAGTCTTCAA
*
20234650 TCTTGCCCTTTATTTA
65 TCTTGCCCTTTAGTTA
* *
20234666 GGGTAAAAGATTGGATTTCTTCAATCTACCCCATGATCGGGGTAAAAGATTGGACAGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGATAGTCTTCAAT
*
20234731 CTTGCCCTCTAGTTA
66 CTTGCCCTTTAGTTA
* * * * * *
20234746 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGATAAAAGATCGGATGGTATTCCAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGATAGTCTTCAAT
20234811 CTTGCCCTTTAGTTA
66 CTTGCCCTTTAGTTA
*
20234826 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGACAGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGATAGTCTTCAAT
*
20234891 CTTGCCTTTTAGTTA
66 CTTGCCCTTTAGTTA
* *
20234906 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAATATTGGA
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGA
20234960 GGTTGTTGCT
Statistics
Matches: 331, Mismatches: 39, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
79 38 0.11
80 292 0.88
81 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (80 bp):
GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGATAGTCTTCAAT
CTTGCCCTTTAGTTA
Found at i:20234765 original size:160 final size:160
Alignment explanation
Indices: 20234506--20234952 Score: 693
Period size: 160 Copynumber: 2.8 Consensus size: 160
20234496 CCCATGGTCG
* * * * * * * * **
20234506 GGGTAAGAGATTGGATTGTCTTCAACCTGCCCCATGGTTGGGGCAAGATATTAGATTGTCTTCAA
1 GGGTAAAAGATTGGATT-TCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGACAGTCTTCAA
*
20234571 TC-TGCCCTCT-GATTAGGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGA-CTGGGGTAAAA
65 TCTTGCCCTCTAG-TTAGGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATC-GGGGTAAAA
*
20234633 GATCGGATGGTATTCAATCTTGCCCTTTATTTA
128 GATCGGATGGTATTCAATCTTGCCCTTTAGTTA
*
20234666 GGGTAAAAGATTGGATTTCTTCAATCTACCCCATGATCGGGGTAAAAGATTGGACAGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGACAGTCTTCAAT
*
20234731 CTTGCCCTCTAGTTAGGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGATAAAAGAT
66 CTTGCCCTCTAGTTAGGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGAT
*
20234796 CGGATGGTATTCCATCTTGCCCTTTAGTTA
131 CGGATGGTATTCAATCTTGCCCTTTAGTTA
20234826 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGACAGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGACAGTCTTCAAT
* *
20234891 CTTGCCTTTTAGTTAGGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAA
66 CTTGCCCTCTAGTTAGGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAA
20234953 TATTGGAGGT
Statistics
Matches: 265, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
159 39 0.15
160 224 0.85
161 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.32
Consensus pattern (160 bp):
GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGACAGTCTTCAAT
CTTGCCCTCTAGTTAGGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGAT
CGGATGGTATTCAATCTTGCCCTTTAGTTA
Found at i:20235174 original size:100 final size:99
Alignment explanation
Indices: 20235014--20235239 Score: 344
Period size: 100 Copynumber: 2.3 Consensus size: 99
20235004 TCCTTGTGAC
* * * * *
20235014 TTCAATCTGCCCCTCTACAGCTTTAGGTGATGAGATTTGTCATTGCGGCTTCATTTTGCCCCTCT
1 TTCAATCTGCACCTCTACAGCTTTAGGAGATGAGATTTGCCATTGCGACTTCATTCTGCCCCTCT
* **
20235079 ACAGCTTTAGGTGTATTAGATTTGCTTTTGCGGT
66 ACAGCTTTAGGTGTATGAGATTTGCCATTGCGGT
* *
20235113 TTCAATTTGCACCTCTATAGCTTTAGGAGAATGAGATTTGCCATTGCGACTTCATTCTGCCCCTC
1 TTCAATCTGCACCTCTACAGCTTTAGGAG-ATGAGATTTGCCATTGCGACTTCATTCTGCCCCTC
20235178 TACAGCTTTAGGTGTATGAGATTTGCCATTGCGGT
65 TACAGCTTTAGGTGTATGAGATTTGCCATTGCGGT
*
20235213 TTCAATCTGCACCTCCACAGCTTTAGG
1 TTCAATCTGCACCTCTACAGCTTTAGG
20235240 GGTAAAAGAT
Statistics
Matches: 113, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
99 25 0.22
100 88 0.78
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.37
Consensus pattern (99 bp):
TTCAATCTGCACCTCTACAGCTTTAGGAGATGAGATTTGCCATTGCGACTTCATTCTGCCCCTCT
ACAGCTTTAGGTGTATGAGATTTGCCATTGCGGT
Found at i:20235252 original size:50 final size:50
Alignment explanation
Indices: 20235013--20235239 Score: 294
Period size: 50 Copynumber: 4.6 Consensus size: 50
20235003 GTCCTTGTGA
*
20235013 CTTCAATCTGCCCCTCTACAGCTTTAGGTG-ATGAGATTTGTCATTGCGG
1 CTTCAATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGG
* * * **
20235062 CTTCATTTTGCCCCTCTACAGCTTTAGGTGTATTAGATTTGCTTTTGCGG
1 CTTCAATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGG
* * * * * * *
20235112 TTTCAATTTGCACCTCTATAGCTTTAGGAGAATGAGATTTGCCATTGCGA
1 CTTCAATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGG
*
20235162 CTTCATTCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGG
1 CTTCAATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGG
* * *
20235212 TTTCAATCTGCACCTCCACAGCTTTAGG
1 CTTCAATCTGCCCCTCTACAGCTTTAGG
20235240 GGTAAAAGAT
Statistics
Matches: 149, Mismatches: 28, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
49 28 0.19
50 121 0.81
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (50 bp):
CTTCAATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGG
Found at i:20244272 original size:12 final size:11
Alignment explanation
Indices: 20244250--20244279 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
20244240 TTAATTAATA
20244250 AATAAATAAAT
1 AATAAATAAAT
20244261 AATAAATAAAAT
1 AATAAAT-AAAT
20244273 AATAAAT
1 AATAAAT
20244280 TTGGGTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AATAAATAAAT
Found at i:20245024 original size:23 final size:23
Alignment explanation
Indices: 20244998--20245041 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
20244988 CAATACATTT
*
20244998 AAAATT-TAATTTTAATTTTAAGG
1 AAAATTAT-ATTTTAAATTTAAGG
20245021 AAAATTATATTTTAAATTTAA
1 AAAATTATATTTTAAATTTAA
20245042 AATTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (23 bp):
AAAATTATATTTTAAATTTAAGG
Found at i:20245484 original size:13 final size:12
Alignment explanation
Indices: 20245465--20245508 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
20245455 AGAAATTTTG
20245465 TTTTCTTTTCCC
1 TTTTCTTTTCCC
*
20245477 TATTTCTTCTCCC
1 T-TTTCTTTTCCC
* *
20245490 TTTCCTTTTCCA
1 TTTTCTTTTCCC
20245502 TTTTCTT
1 TTTTCTT
20245509 ATTTACATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
12 15 0.58
13 11 0.42
ACGTcount: A:0.05, C:0.32, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTTCTTTTCCC
Found at i:20246390 original size:270 final size:268
Alignment explanation
Indices: 20245910--20246447 Score: 1040
Period size: 270 Copynumber: 2.0 Consensus size: 268
20245900 ATCGGGGCAA
20245910 ATCGTGCCTAAGATTAGGGCCACACGAGCATGTGGACCACAAGGCCCCTCACACGACCATATCCC
1 ATCGTGCCTAAGATTAGGGCCACACGAGCATGTGGACCACAAGGCCCCTCACACGACCATATCCC
20245975 TCTGGAACCCTAGGATAGTTCGAATCTCACACGGTCTGCCACGATTGTATCTCCCTTATAGCTTA
66 TCTGGAACCCTAGGATAGTTCGAATCTCACACGGTCTGCCACGATTGTATCTCCCTTATAGCTTA
*
20246040 ATTTTGCAAATTCCACACGACCACAGTCTATTACACGGGCGTGTAACTCCTCCACATGGTTTATA
131 ATTTTGCAAATTCCACACGACCACAGTCTATTACACGGCCGTGTAACTCCTCCACATGGTTTATA
20246105 GCATCCCACACAGCCTGGTCACATGGTCGTGTGTCCCTTGTTTCATAGTTTTGCCCAAAATTTTA
196 GCATCCCACACAGCCTGGTCACATGGTCGTGTGTCCCTTGTTTCATAGTTTTGCCCAAAATTTTA
20246170 TGATTTGT
261 TGATTTGT
*
20246178 ATCGTGCCTAAGATTAGGGCCACACGAGCATGTGGACCACAAGGCCCCTCACACGACCATATGCC
1 ATCGTGCCTAAGATTAGGGCCACACGAGCATGTGGACCACAAGGCCCCTCACACGACCATATCCC
20246243 TCTGGAACCCTAGGATAGTTCGAATCTCACACGGTCTGCCACACGATTGTATCTCCCTTATAGCT
66 TCTGGAACCCTAGGATAGTTCGAATCTCACACGGTCTG-C-CACGATTGTATCTCCCTTATAGCT
20246308 TAATTTTGCAAATTCCACACGACCACAGTCTATTACACGGCCGTGTAACTCCTCCACATGGTTTA
129 TAATTTTGCAAATTCCACACGACCACAGTCTATTACACGGCCGTGTAACTCCTCCACATGGTTTA
20246373 TAGCATCCCACACAGCCTGGTCACATGGTCGTGTGTCCCTTGTTTCATAGTTTTGCCCAAAATTT
194 TAGCATCCCACACAGCCTGGTCACATGGTCGTGTGTCCCTTGTTTCATAGTTTTGCCCAAAATTT
20246438 TATGATTTGT
259 TATGATTTGT
20246448 TCAGTTTAGT
Statistics
Matches: 266, Mismatches: 2, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
268 102 0.38
269 1 0.00
270 163 0.61
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (268 bp):
ATCGTGCCTAAGATTAGGGCCACACGAGCATGTGGACCACAAGGCCCCTCACACGACCATATCCC
TCTGGAACCCTAGGATAGTTCGAATCTCACACGGTCTGCCACGATTGTATCTCCCTTATAGCTTA
ATTTTGCAAATTCCACACGACCACAGTCTATTACACGGCCGTGTAACTCCTCCACATGGTTTATA
GCATCCCACACAGCCTGGTCACATGGTCGTGTGTCCCTTGTTTCATAGTTTTGCCCAAAATTTTA
TGATTTGT
Found at i:20247862 original size:11 final size:11
Alignment explanation
Indices: 20247854--20247885 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
20247844 TTTAAATATT
20247854 TAATAAATAAA
1 TAATAAATAAA
*
20247865 TAATAAATACA
1 TAATAAATAAA
20247876 TAATAAATAA
1 TAATAAATAA
20247886 CAAAAAGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAATAAA
Found at i:20257724 original size:85 final size:85
Alignment explanation
Indices: 20257561--20257717 Score: 217
Period size: 85 Copynumber: 1.8 Consensus size: 85
20257551 ACCCCATCTC
* * * *
20257561 CTTGATGAGATATAAAAAAGTGGGTCAAAACAATAAAGCGGCCATCTTTCTGATGAGATACAAAG
1 CTTGATGAGATACAAAAAAGTGGATCAAAACAACAAAGCGGCCATCTTCCTGATGAGATACAAAG
20257626 AAGTGGACCAAATCCACCTT
66 AAGTGGACCAAATCCACCTT
* * * * *
20257646 CTTGATGAGATACAGAGAAGTGGATCAAAGA-AACAAAGCGGCCATCTTCCTGCTGAGATATAGA
1 CTTGATGAGATACAAAAAAGTGGATCAAA-ACAACAAAGCGGCCATCTTCCTGATGAGATACAAA
20257710 GAAGTGGA
65 GAAGTGGA
20257718 TTAAATCAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
85 61 0.98
86 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.21
Consensus pattern (85 bp):
CTTGATGAGATACAAAAAAGTGGATCAAAACAACAAAGCGGCCATCTTCCTGATGAGATACAAAG
AAGTGGACCAAATCCACCTT
Found at i:20257772 original size:48 final size:48
Alignment explanation
Indices: 20257650--20257781 Score: 165
Period size: 48 Copynumber: 2.8 Consensus size: 48
20257640 CACCTTCTTG
** ** *
20257650 ATGAGATACAGAGAAGTGGATCAAAGAAACAAAGCGGCCATCTTCCTG
1 ATGAGATACAGAGAAGTGGATCAAATCAATGAAGCGGCCATCTTCCTA
* * * *
20257698 CTGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTA
1 ATGAGATACAGAGAAGTGGATCAAATCAATGAAGCGGCCATCTTCCTA
* *
20257746 ATGAGATACAGAGAAGTAGACCAAATCAATGAAGCG
1 ATGAGATACAGAGAAGTGGATCAAATCAATGAAGCG
20257782 AAGCTCATTA
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (48 bp):
ATGAGATACAGAGAAGTGGATCAAATCAATGAAGCGGCCATCTTCCTA
Found at i:20257969 original size:208 final size:208
Alignment explanation
Indices: 20257691--20258188 Score: 775
Period size: 208 Copynumber: 2.4 Consensus size: 208
20257681 AAGCGGCCAT
* * *
20257691 CTTCCTGCTGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTAATGAGATACA
1 CTTCCTGATGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCTTGATGAGATACA
* * *
20257756 GAGAAGTAGACCAAATCAATGAAGCGAAGCTCATTACTAATGAGACTTCAAACCCCATCTTCCTG
66 GAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTTCAAACCCCATATTCCTG
*
20257821 ATGAGATATAGAGAAGTGGGTCAAAGCAATAAAATAGTC-ATCTTCCTGATGAGATAC-AGAGAA
131 ATGAGATATAGAGAAGTGGGTCAAAGCAATAAAA-AGGCAATCTTCCTGATGAGATACGA-AGAA
* *
20257884 GTGGACCAAATCTGC
194 ATGGACCAAATCCGC
* * * * * * *
20257899 CTTCTTGATGATATATAAAGGAGTGGATTAAATCAATGAAGCGATCATTTTCTTGATAAGATACA
1 CTTCCTGATGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCTTGATGAGATACA
20257964 GAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTTCAAACCCCATATTCCTG
66 GAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTTCAAACCCCATATTCCTG
*
20258029 ATGAGATATAGAGAAGTGGGTCAAAGCAATAAAACGGCAATCTTCCTGATGAGATACGAAGAAAT
131 ATGAGATATAGAGAAGTGGGTCAAAGCAATAAAAAGGCAATCTTCCTGATGAGATACGAAGAAAT
20258094 GGACCAAATCCGC
196 GGACCAAATCCGC
* * * *
20258107 CTTCCTGATGAGATATAGAGAAGTGGATCAAAGCAATAAAGCGGCCATCTTCTTGATGAGATACA
1 CTTCCTGATGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCTTGATGAGATACA
20258172 GAGAAGTAGACCAAATC
66 GAGAAGTAGACCAAATC
20258189 CGCCTTTTGA
Statistics
Matches: 260, Mismatches: 28, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
207 2 0.01
208 257 0.99
209 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.23
Consensus pattern (208 bp):
CTTCCTGATGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCTTGATGAGATACA
GAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTTCAAACCCCATATTCCTG
ATGAGATATAGAGAAGTGGGTCAAAGCAATAAAAAGGCAATCTTCCTGATGAGATACGAAGAAAT
GGACCAAATCCGC
Found at i:20258175 original size:293 final size:291
Alignment explanation
Indices: 20257814--20258773 Score: 1294
Period size: 293 Copynumber: 3.3 Consensus size: 291
20257804 CAAACCCCAT
* * ***
20257814 CTTCCTGATGAGATATAGAGAAGTGGGTCAAAGCAATAAAATAGTCATCTTCCTGATGAGATACA
1 CTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACA
* * * * * *
20257879 GAGAAGTGGACCAAATCTGCCTTCTTGATGATATATAAAGGAGTGGATTAAATCAATGAAGCGAT
66 GAGAAGTAGACCAAATCCGCCTTCTTGATGAGATATAAAGAAGTGGATTAAATCAATAAAGCGGT
* *
20257944 CATTTTCTTGATAAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGA
131 CATCTTCCTGATAAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGA
* * *
20258009 CTTCAAACCCCATATTCCTGATGAGATATAGAGAAGTGGGTCAAAGCAATAAAACGGCAATCTTC
196 CTTCAAACCCCATCTTCCTAATGAGATACAGAGAAGTGGGTCAAAGCAATAAAACGGC-ATCTTC
*
20258074 CTGATGAGATACGAAGAAATGGACCAAATCCGC
260 CTGATGAGATAC-AAGAAGTGGACCAAATCCGC
* * *
20258107 CTTCCTGATGAGATATAGAGAAGTGGATCAAAGCAATAAAGCGGCCATCTTCTTGATGAGATACA
1 CTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACA
* * *
20258172 GAGAAGTAGACCAAATCCGCCTT-TTGATGAGATATAGAGAAATGGATTAAATCAATAAAGTGGT
66 GAGAAGTAGACCAAATCCGCCTTCTTGATGAGATATAAAGAAGTGGATTAAATCAATAAAGCGGT
*
20258236 CATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGA
131 CATCTTCCTGATAAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGA
** *
20258301 CTTCAAACCTAATCTTCCTAATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTC
196 CTTCAAACCCCATCTTCCTAATGAGATACAGAGAAGTGGGTCAAAGCAATAAAACGG-CATCTTC
*
20258366 CTGATGAGATACAAAGAAGTGGACCAAATCCAC
260 CTGATGAGATAC-AAGAAGTGGACCAAATCCGC
* * * * *
20258399 CTTCTTGCTGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGATGAGATACA
1 CTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACA
* * * * * *
20258464 AAAAAGTGGACCAAATCCACCTTCTTGTTGAGATACAGAA-AAGTGGATTAAATCAATAAAGCGG
66 GAGAAGTAGACCAAATCCGCCTTCTTGATGAGATATA-AAGAAGTGGATTAAATCAATAAAGCGG
* * * *
20258528 TCATCTTCCTGATAAGATATAAAGAAGTAGACCAAATCAACGAAGCGATGCTCAATACGAATGAG
130 TCATCTTCCTGATAAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAG
* * * * * **
20258593 ACTTTAAACCCCATCTTCCTAATGAGATACAAAAAAATGGGTCAAAGTAATAAAACGATTATCTT
195 ACTTCAAACCCCATCTTCCTAATGAGATACAGAGAAGTGGGTCAAAGCAATAAAACG-GCATCTT
* **
20258658 TCTGATGAGATACAGAGAAGTATACCAAATCCGC
259 CCTGATGAGATACA-AGAAGTGGACCAAATCCGC
* * * * * * *
20258692 CTTCTTTATGAGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCTTGATGAGATACA
1 CTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACA
*
20258757 GAGAAGTAGAACAAATC
66 GAGAAGTAGACCAAATC
20258774 AATGAAACGA
Statistics
Matches: 589, Mismatches: 73, Indels: 10
0.88 0.11 0.01
Matches are distributed among these distances:
292 260 0.44
293 328 0.56
294 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (291 bp):
CTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACA
GAGAAGTAGACCAAATCCGCCTTCTTGATGAGATATAAAGAAGTGGATTAAATCAATAAAGCGGT
CATCTTCCTGATAAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGA
CTTCAAACCCCATCTTCCTAATGAGATACAGAGAAGTGGGTCAAAGCAATAAAACGGCATCTTCC
TGATGAGATACAAGAAGTGGACCAAATCCGC
Found at i:20258240 original size:84 final size:84
Alignment explanation
Indices: 20258023--20258272 Score: 360
Period size: 85 Copynumber: 3.0 Consensus size: 84
20258013 AAACCCCATA
* *
20258023 TTCCTGATGAGATATAGAGAAGTGGGTCAAAGCAATAAAACGGCAATCTTCCTGATGAGATAC-G
1 TTCCTGATGAGATATAGAGAAGTGGATCAAAGCAATAAAGCGGC-ATCTTCCTGATGAGATACAG
* *
20258087 AAGAAATGGACCAAATCCGCC
65 -AGAAGTAGACCAAATCCGCC
*
20258108 TTCCTGATGAGATATAGAGAAGTGGATCAAAGCAATAAAGCGGCCATCTTCTTGATGAGATACAG
1 TTCCTGATGAGATATAGAGAAGTGGATCAAAGCAATAAAGCGG-CATCTTCCTGATGAGATACAG
20258173 AGAAGTAGACCAAATCCGCC
65 AGAAGTAGACCAAATCCGCC
* * * * *
20258193 TT-TTGATGAGATATAGAGAAATGGATTAAATCAATAAAGTGGTCATCTTCCTGATGAGATACAG
1 TTCCTGATGAGATATAGAGAAGTGGATCAAAGCAATAAAGCGG-CATCTTCCTGATGAGATACAG
20258257 AGAAGTAGACCAAATC
65 AGAAGTAGACCAAATC
20258273 AATGAAGCGA
Statistics
Matches: 151, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
84 71 0.47
85 78 0.52
86 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (84 bp):
TTCCTGATGAGATATAGAGAAGTGGATCAAAGCAATAAAGCGGCATCTTCCTGATGAGATACAGA
GAAGTAGACCAAATCCGCC
Found at i:20258347 original size:207 final size:208
Alignment explanation
Indices: 20258107--20258480 Score: 599
Period size: 207 Copynumber: 1.8 Consensus size: 208
20258097 CCAAATCCGC
* * *
20258107 CTTCCTGATGAGATATAGAGAAGTGGATCAAAGCAATAAAGCGGCCATCTTCTTGATGAGATACA
1 CTTCCTAATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGGCCATCTTCCTGATGAGATACA
* * * *
20258172 GAGAAGTAGACCAAATCCGCCTT-TTGATGAGATATAGAGAAA-TGGATTAAATCAATAAAGTGG
66 AAGAAGTAGACCAAATCCACCTTCTTGATGAGATACAGA-AAAGTGGATTAAATCAATAAAGCGG
* *
20258235 TCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAG
130 TCATCTTCCTGATGAGATACAAAAAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAG
20258300 ACTTCAAACCTAAT
195 ACTTCAAACCTAAT
* *
20258314 CTTCCTAATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACA
1 CTTCCTAATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGGCCATCTTCCTGATGAGATACA
* *
20258379 AAGAAGTGGACCAAATCCACCTTCTTGCTGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGT
66 AAGAAGTAGACCAAATCCACCTTCTTGATGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGT
*
20258444 CATCTTCCTGATGAGATACAAAAAAGTGGACCAAATC
131 CATCTTCCTGATGAGATACAAAAAAGTAGACCAAATC
20258481 CACCTTCTTG
Statistics
Matches: 151, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
207 83 0.55
208 68 0.45
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (208 bp):
CTTCCTAATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGGCCATCTTCCTGATGAGATACA
AAGAAGTAGACCAAATCCACCTTCTTGATGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGT
CATCTTCCTGATGAGATACAAAAAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGA
CTTCAAACCTAAT
Found at i:20258432 original size:37 final size:37
Alignment explanation
Indices: 20258362--20258510 Score: 111
Period size: 37 Copynumber: 3.7 Consensus size: 37
20258352 AAGCGGTCAT
*
20258362 CTTCCTGATGAGATACA-AAGAAGTGGACCAAATCCAC
1 CTTCTTGATGAGATACAGAA-AAGTGGACCAAATCCAC
* * * *
20258399 CTTCTTGCTGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCAT
1 CTTCTTGATGAGATACAGAAAAGTGG-----A-C--CAAATC---CAC
* *
20258447 CTTCCTGATGAGATACAAAAAAGTGGACCAAATCCAC
1 CTTCTTGATGAGATACAGAAAAGTGGACCAAATCCAC
*
20258484 CTTCTTGTTGAGATACAGAAAAGTGGA
1 CTTCTTGATGAGATACAGAAAAGTGGA
20258511 TTAAATCAAT
Statistics
Matches: 86, Mismatches: 14, Indels: 24
0.69 0.11 0.19
Matches are distributed among these distances:
37 47 0.55
38 2 0.02
40 4 0.05
42 2 0.02
43 2 0.02
45 4 0.05
48 25 0.29
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (37 bp):
CTTCTTGATGAGATACAGAAAAGTGGACCAAATCCAC
Found at i:20258465 original size:85 final size:85
Alignment explanation
Indices: 20258322--20258565 Score: 407
Period size: 85 Copynumber: 2.9 Consensus size: 85
20258312 ATCTTCCTAA
* * * *
20258322 TGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAAAGAAGTG
1 TGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGATGAGATACAAAGAAGTG
20258387 GACCAAATCCACCTTCTTGC
66 GACCAAATCCACCTTCTTGC
*
20258407 TGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGATGAGATACAAAAAAGTG
1 TGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGATGAGATACAAAGAAGTG
*
20258472 GACCAAATCCACCTTCTTGT
66 GACCAAATCCACCTTCTTGC
* * *
20258492 TGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGATAAGATATAAAGAAGTA
1 TGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGATGAGATACAAAGAAGTG
20258557 GACCAAATC
66 GACCAAATC
20258566 AACGAAGCGA
Statistics
Matches: 149, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 149 1.00
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.23
Consensus pattern (85 bp):
TGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGATGAGATACAAAGAAGTG
GACCAAATCCACCTTCTTGC
Found at i:20258480 original size:48 final size:48
Alignment explanation
Indices: 20258407--20258567 Score: 128
Period size: 48 Copynumber: 3.6 Consensus size: 48
20258397 ACCTTCTTGC
* **
20258407 TGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGA
1 TGAGATACAAAAAAGTGGACCAAATCAATAAAGCGGTCATCTTCCTGA
* * *
20258455 TGAGATACAAAAAAGTGGACC--A--AAT----C---CACCTTCTTGT
1 TGAGATACAAAAAAGTGGACCAAATCAATAAAGCGGTCATCTTCCTGA
* **
20258492 TGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGA
1 TGAGATACAAAAAAGTGGACCAAATCAATAAAGCGGTCATCTTCCTGA
* * * *
20258540 TAAGATATAAAGAAGTAGACCAAATCAA
1 TGAGATACAAAAAAGTGGACCAAATCAA
20258568 CGAAGCGATG
Statistics
Matches: 83, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
37 26 0.31
39 1 0.01
40 1 0.01
41 3 0.04
44 3 0.04
45 1 0.01
46 1 0.01
48 47 0.57
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.24
Consensus pattern (48 bp):
TGAGATACAAAAAAGTGGACCAAATCAATAAAGCGGTCATCTTCCTGA
Found at i:20258621 original size:208 final size:209
Alignment explanation
Indices: 20258407--20258979 Score: 636
Period size: 208 Copynumber: 2.7 Consensus size: 209
20258397 ACCTTCTTGC
* *
20258407 TGAGATACAGAAAAGTGGATTAAA-TCAATAAAGCGGTCATCTTCCTGATGAGATACAAAAAAGT
1 TGAGATACAGAAAA-TGGGTCAAAGTCAATAAAGCGGTCATCTTCCTGATGAGATACAAAAAAGT
20258471 GGACCAAATCCACCTTCTTGTTGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTC
65 GGACCAAATCCACCTTCTTGTTGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTC
* * * * * * *
20258536 CTGATAAGATATAAAGAAGTAGACCAAATCAACGAAGCGATGCTCAATACGAATGAGACTTTAAA
130 CTGATGAGATACAAAGAAGTAGAACAAATCAACGAAACGAAGCTCAATACGAATGAAACTTCAAA
*
20258601 -CCCCATCTTCCTAA
195 CCCCCATCCTCCTAA
* * * * * * *
20258615 TGAGATACAAAAAAATGGGTCAAAGT-AATAAAACGATTATCTTTCTGATGAGATACAGAGAAGT
1 TGAGATAC-AGAAAATGGGTCAAAGTCAATAAAGCGGTCATCTTCCTGATGAGATACAAAAAAGT
** * *
20258679 ATACCAAATCCGCCTTCTT-TATGAGATACA-AAGAAGTGGATTAAATCAATGAAGCGGTCATCT
65 GGACCAAATCCACCTTCTTGT-TGAGATACAGAA-AAGTGGATTAAATCAATAAAGCGGTCATCT
* * * ** *
20258742 TCTTGATGAGATACAGAGAAGTAGAACAAATCAATGAAACGAAGCTCAATGTGAGTGAAACTTCA
128 TCCTGATGAGATACAAAGAAGTAGAACAAATCAACGAAACGAAGCTCAATACGAATGAAACTTCA
*
20258807 AACCCCCATCCTCCTGA
193 AACCCCCATCCTCCTAA
* *
20258824 TGAGATATAGAGAAATGGGTCAAAGCCAATAAAGCGGTCATCTTCCTGATTTCCTGATGAGATAC
1 TGAGATACAGA-AAATGGGTCAAAGTCAATAAAGCGGTCA---T-C----TTCCTGATGAGATAC
* * * * * * *
20258889 AGAGAAA-TGGACCAAATCCTCGTTCCTGATGAGATACAGAGAAGTGGATTAAATCAATAAAGTG
57 A-AAAAAGTGGACCAAATCCACCTTCTTGTTGAGATACAGAAAAGTGGATTAAATCAATAAAGCG
*
20258953 GTCATCTTCCTGATGAGATACAGAGAA
121 GTCATCTTCCTGATGAGATACAAAGAA
20258980 CTATACCAAT
Statistics
Matches: 299, Mismatches: 48, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
207 3 0.01
208 157 0.53
209 38 0.13
210 10 0.03
213 1 0.00
214 1 0.00
218 86 0.29
219 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (209 bp):
TGAGATACAGAAAATGGGTCAAAGTCAATAAAGCGGTCATCTTCCTGATGAGATACAAAAAAGTG
GACCAAATCCACCTTCTTGTTGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCC
TGATGAGATACAAAGAAGTAGAACAAATCAACGAAACGAAGCTCAATACGAATGAAACTTCAAAC
CCCCATCCTCCTAA
Found at i:20258666 original size:500 final size:495
Alignment explanation
Indices: 20257699--20258974 Score: 1372
Period size: 500 Copynumber: 2.5 Consensus size: 495
20257689 ATCTTCCTGC
*
20257699 TGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTA
1 TGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTA
* *
20257764 GACCAAATCAATGAAGCGAAGCTCATTACTAATGAGACTTCAAACCCCATCTTCCTGATGAGATA
66 GACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTTCAAACCCCATCTTCCTGATGAGATA
***
20257829 TAGAGAAGTGGGTCAAAGCAATAAAATAGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAA
131 TAGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAA
** * * * * * * * *
20257894 TCTGCCTTCTTGATGATATATA-AAGGAGTGGATTAAATCAATGAAGCGATCATTTTCTTGATAA
196 TCCACCTTCTTGATGAGATACAGAA-AAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGATGA
* * *
20257958 GATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTTCAAACCCCATA
260 GATACAAAAAAGTAGACCAAATCAATCAAGCGAAGCTCAATACGAATGAGACTTCAAACCCCATA
* * * **
20258023 TTCCTGATGAGATATAGAGAAGTGGGTCAAAGCAATAAAACGGCAATCTTCCTGATGAGATACGA
325 TTCCTGATAAGATATAAAGAAGTAGACCAAAGCAATAAAAC-GCAATCTTCC----GAGATACGA
* * * * * * * * *
20258088 AGAAATGGACCAAATCCGCCTTCCTGATGAGATATAGAGAAGTGGATCAAAGCAATAAAGCGGCC
385 AGAAATGGA-CAAACCCACCTTCCTAATGAGATACAAAAAAATGGATCAAAGCAATAAAACGACC
20258153 ATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCCGCCTT-TTGA
449 ATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCCGCCTTCTTGA
* * *
20258199 TGAGATATAGAGAAATGGATTAAATCAATAAAGTGGTCATCTTCCTGATGAGATACAGAGAAGTA
1 TGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTA
** *
20258264 GACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTTCAAACCTAATCTTCCTAATGAGATA
66 GACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTTCAAACCCCATCTTCCTGATGAGATA
* *
20258329 CAGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAAAGAAGTGGACCAAA
131 TAGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAA
*
20258394 TCCACCTTCTTGCTGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGATGAG
196 TCCACCTTCTTGATGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGATGAG
* * *** ** * * *
20258459 ATACAAAAAAGTGGACCAAATCCA-CCTTC-TTGTTGAGATACAGAAAAGTG-GATTAAATCAAT
261 ATACAAAAAAGTAGACCAAATCAATCAAGCGAAGCTCA-ATAC-G--AA-TGAGACT---TC---
** * * ** *
20258521 AAAGCGGTCATCTTCCTGATAAGATATAAAGAAGTAGACCAAATCAA-CGAA-GCGATGC-T-C-
315 AAA-C-CCCATATTCCTGATAAGATATAAAGAAGTAGACCAAAGCAATAAAACGCAAT-CTTCCG
* ** * * * *
20258581 A-ATACGAATGAGACTTTA-AACCCCATCTTCCTAATGAGATACAAAAAAATGGGTCAAAGTAAT
377 AGATACGAA-GA-AATGGACAAACCCACCTTCCTAATGAGATACAAAAAAATGGATCAAAGCAAT
** * *
20258644 AAAACGATTATCTT-TCTGATGAGATACAGAGAAGTATACCAAATCCGCCTTCTTTA
440 AAAACGACCATCTTCT-TGATGAGATACAGAGAAGTAGACCAAATCCGCCTTCTTGA
* * *
20258700 TGAGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCTTGATGAGATACAGAGAAGTA
1 TGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTA
* * ** * * *
20258765 GAACAAATCAATGAAACGAAGCTCAATGTGAGTGAAACTTCAAACCCCCATCCTCCTGATGAGAT
66 GACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTTCAAA-CCCCATCTTCCTGATGAGAT
*
20258830 ATAGAGAAATGGGTCAAAGCCAATAAAGCGGTCATCTTCCTGATTTCCTGATGAGATACAGAGAA
130 ATAGAGAAGTGGGTCAAAG-CAATAAAGCGGTCA---T-C----TTCCTGATGAGATACAGAGAA
* * * * * *
20258895 ATGGACCAAATCCTCGTTCCTGATGAGATACAGAGAAGTGGATTAAATCAATAAAGTGGTCATCT
186 GTGGACCAAATCCACCTTCTTGATGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCT
20258960 TCCTGATGAGATACA
251 TCCTGATGAGATACA
20258975 GAGAACTATA
Statistics
Matches: 651, Mismatches: 96, Indels: 47
0.82 0.12 0.06
Matches are distributed among these distances:
498 3 0.00
499 6 0.01
500 338 0.52
501 105 0.16
502 41 0.06
503 16 0.02
505 2 0.00
506 2 0.00
507 6 0.01
508 4 0.01
509 3 0.00
510 32 0.05
511 93 0.14
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (495 bp):
TGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTA
GACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTTCAAACCCCATCTTCCTGATGAGATA
TAGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAA
TCCACCTTCTTGATGAGATACAGAAAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTGATGAG
ATACAAAAAAGTAGACCAAATCAATCAAGCGAAGCTCAATACGAATGAGACTTCAAACCCCATAT
TCCTGATAAGATATAAAGAAGTAGACCAAAGCAATAAAACGCAATCTTCCGAGATACGAAGAAAT
GGACAAACCCACCTTCCTAATGAGATACAAAAAAATGGATCAAAGCAATAAAACGACCATCTTCT
TGATGAGATACAGAGAAGTAGACCAAATCCGCCTTCTTGA
Found at i:20259477 original size:15 final size:15
Alignment explanation
Indices: 20259457--20259488 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
20259447 ATTAGTAAAC
20259457 AAATTTTAAATTTAA
1 AAATTTTAAATTTAA
20259472 AAATTTTAAATTTAA
1 AAATTTTAAATTTAA
20259487 AA
1 AA
20259489 TGTCCAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATTTTAAATTTAA
Found at i:20260107 original size:11 final size:11
Alignment explanation
Indices: 20260091--20260122 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
20260081 TTGAAACATT
20260091 TAATAAATAAA
1 TAATAAATAAA
*
20260102 TAATAAATACA
1 TAATAAATAAA
20260113 TAATAAATAA
1 TAATAAATAA
20260123 CAAAAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAATAAA
Found at i:20262321 original size:28 final size:29
Alignment explanation
Indices: 20262263--20262360 Score: 137
Period size: 29 Copynumber: 3.4 Consensus size: 29
20262253 CGAATAATTT
*
20262263 TAAAATTATTAAAATTATTTTTTTAAAATA
1 TAAAAATATTAAAATTA-TTTTTTAAAATA
20262293 TAAAAAT-TTAAAATTATTTTTTAAAATA
1 TAAAAATATTAAAATTATTTTTTAAAATA
* *
20262321 TAAAATTATTAAAATTATTTTTTAAAAAA
1 TAAAAATATTAAAATTATTTTTTAAAATA
20262350 TAATAAA-ATTA
1 TAA-AAATATTA
20262361 TTAAATAATT
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
28 18 0.29
29 36 0.58
30 8 0.13
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
TAAAAATATTAAAATTATTTTTTAAAATA
Found at i:20262372 original size:29 final size:30
Alignment explanation
Indices: 20262263--20262374 Score: 115
Period size: 29 Copynumber: 3.8 Consensus size: 30
20262253 CGAATAATTT
* **
20262263 TAAAATTATTAAAATTATTTTTTTAAAATA
1 TAAAATTATTAAAATTAATTTTAAAAAATA
* **
20262293 TAAAAAT-TTAAAATT-ATTTTTTAAAATA
1 TAAAATTATTAAAATTAATTTTAAAAAATA
*
20262321 TAAAATTATTAAAATTATTTTTTAAAAAATAA
1 TAAAATTATTAAAATTA-ATTTTAAAAAAT-A
20262353 TAAAATTATT-AAA-TAATTTTAA
1 TAAAATTATTAAAATTAATTTTAA
20262375 TTTTCAATTT
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
28 18 0.25
29 22 0.31
30 8 0.11
31 12 0.17
32 11 0.15
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (30 bp):
TAAAATTATTAAAATTAATTTTAAAAAATA
Found at i:20263249 original size:19 final size:21
Alignment explanation
Indices: 20263225--20263265 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
20263215 TTATAATTCT
20263225 AATAATTTT-AT-ATTTTAAA
1 AATAATTTTAATAATTTTAAA
20263244 AATAATTTTAATAATTTTAAA
1 AATAATTTTAATAATTTTAAA
20263265 A
1 A
20263266 TCATTTGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 9 0.45
20 2 0.10
21 9 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
AATAATTTTAATAATTTTAAA
Found at i:20266415 original size:18 final size:18
Alignment explanation
Indices: 20266392--20266429 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
20266382 TAAATTTTCG
20266392 AATTCAAAT-AACTCGAAT
1 AATTCAAATAAAC-CGAAT
20266410 AATTCAAATAAACCGAAT
1 AATTCAAATAAACCGAAT
20266428 AA
1 AA
20266430 AACTATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.24
Consensus pattern (18 bp):
AATTCAAATAAACCGAAT
Found at i:20267581 original size:33 final size:33
Alignment explanation
Indices: 20267517--20267582 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
20267507 TTAAAAGTTA
*
20267517 AATTTATTAAAAATTTAAAATTAAAATTAAAAT
1 AATTTATTAAAAATTTAAAATTAAAACTAAAAT
* * * **
20267550 AATTTATTATAATTTTTAAATTTGAACTAAAAT
1 AATTTATTAAAAATTTAAAATTAAAACTAAAAT
20267583 GATAAATTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (33 bp):
AATTTATTAAAAATTTAAAATTAAAACTAAAAT
Found at i:20273266 original size:11 final size:11
Alignment explanation
Indices: 20273196--20273266 Score: 52
Period size: 11 Copynumber: 5.9 Consensus size: 11
20273186 TAGCTTTGAG
*
20273196 TTTAAATTAAT
1 TTTAAATTTAT
20273207 TTTAAATTTAT
1 TTTAAATTTAT
*
20273218 TTTAAAATTTAAAA
1 TTT-AAATTT--AT
*
20273232 TTTAAAATTACTT
1 TTTAAATTTA--T
*
20273245 ATTTAAGTTTAT
1 -TTTAAATTTAT
20273257 TTTAAATTTA
1 TTTAAATTTA
20273267 AATTTGAATA
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
11 23 0.49
12 7 0.15
13 5 0.11
14 12 0.26
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (11 bp):
TTTAAATTTAT
Found at i:20273908 original size:12 final size:12
Alignment explanation
Indices: 20273891--20273929 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
20273881 AACTACTTAC
20273891 TATATATTACTA
1 TATATATTACTA
20273903 TATATATTAC--
1 TATATATTACTA
20273913 TATATATTACTA
1 TATATATTACTA
20273925 TATAT
1 TATAT
20273930 TACTGTCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 10 0.40
12 15 0.60
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (12 bp):
TATATATTACTA
Found at i:20273915 original size:22 final size:22
Alignment explanation
Indices: 20273887--20273929 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
20273877 AGATAACTAC
20273887 TTACTATATATTACTATATATA
1 TTACTATATATTACTATATATA
20273909 TTACTATATATTACTATATAT
1 TTACTATATATTACTATATAT
20273930 TACTGTCTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (22 bp):
TTACTATATATTACTATATATA
Found at i:20273940 original size:10 final size:10
Alignment explanation
Indices: 20273887--20273933 Score: 76
Period size: 10 Copynumber: 4.5 Consensus size: 10
20273877 AGATAACTAC
20273887 TTACTATATA
1 TTACTATATA
20273897 TTACTATATATA
1 TTAC--TATATA
20273909 TTACTATATA
1 TTACTATATA
20273919 TTACTATATA
1 TTACTATATA
20273929 TTACT
1 TTACT
20273934 GTCTATTTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
10 25 0.71
12 10 0.29
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (10 bp):
TTACTATATA
Found at i:20274084 original size:3 final size:3
Alignment explanation
Indices: 20274076--20274112 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
20274066 TTACATATTA
20274076 AAT AAT AAT AAT AA- AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
20274113 AAACGAAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:20275185 original size:30 final size:30
Alignment explanation
Indices: 20275134--20275528 Score: 432
Period size: 30 Copynumber: 13.2 Consensus size: 30
20275124 CCCTAAATTA
* *
20275134 TCCAGAAATTACATTTCGACCCTAAAACTTT
1 TCCA-AAATTATATTTTGACCCTAAAACTTT
** *
20275165 TTGAAAATTATATTTTGACCCCAAAACTTT
1 TCCAAAATTATATTTTGACCCTAAAACTTT
** * *
20275195 TTGAAAATTACATTTTGACCCCT-AAATTTT
1 TCCAAAATTATATTTTGA-CCCTAAAACTTT
* *
20275225 TCTAAAATTATATTTTAACCCTAAAACTTT
1 TCCAAAATTATATTTTGACCCTAAAACTTT
* *
20275255 TCCAAAATTACATTTTGACCCCAAAAC-TT
1 TCCAAAATTATATTTTGACCCTAAAACTTT
*
20275284 TCTAAAACTTATATTTTGACCCTAAAACTTT
1 TCCAAAA-TTATATTTTGACCCTAAAACTTT
*
20275315 TCCAAAATTACATTTTGACCCTAAAA-TGTT
1 TCCAAAATTATATTTTGACCCTAAAACT-TT
*
20275345 TCCAAAATTATATTTTGACCCCAAAACTTT
1 TCCAAAATTATATTTTGACCCTAAAACTTT
* *
20275375 TCCAAAATTACATTTTGACCCCAAAAC-TT
1 TCCAAAATTATATTTTGACCCTAAAACTTT
*
20275404 TCACAAAATTATATTTTAACCCTAAAAC-TT
1 TC-CAAAATTATATTTTGACCCTAAAACTTT
* *
20275434 TCCAAAATTACATTTTAACCCTAAAAC-TT
1 TCCAAAATTATATTTTGACCCTAAAACTTT
* *
20275463 TCTAAAAATTATATTTTGGCCCCT-AAACTTT
1 TC-CAAAATTATATTTT-GACCCTAAAACTTT
*
20275494 TCCAAAATCATATTTTGACACC-AAAA--TT
1 TCCAAAATTATATTTTGAC-CCTAAAACTTT
20275522 TCCAAAA
1 TCCAAAA
20275529 AAATTGCTTT
Statistics
Matches: 316, Mismatches: 36, Indels: 27
0.83 0.09 0.07
Matches are distributed among these distances:
28 9 0.03
29 47 0.15
30 238 0.75
31 22 0.07
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.37
Consensus pattern (30 bp):
TCCAAAATTATATTTTGACCCTAAAACTTT
Found at i:20275215 original size:60 final size:60
Alignment explanation
Indices: 20275134--20275528 Score: 498
Period size: 60 Copynumber: 6.6 Consensus size: 60
20275124 CCCTAAATTA
* * *
20275134 TCCAGAAATTACATTTCGACCCTAAAACTTTTTGAAAATTATATTTTGACCCCAAAACTTT
1 TCCA-AAATTACATTTTGACCCTAAAACTTTCTCAAAATTATATTTTGACCCCAAAACTTT
** ** * *
20275195 TTGAAAATTACATTTTGACCCCTAAATTTTTCT-AAAATTATATTTTAACCCTAAAACTTT
1 TCCAAAATTACATTTTGA-CCCTAAAACTTTCTCAAAATTATATTTTGACCCCAAAACTTT
* *
20275255 TCCAAAATTACATTTTGACCCCAAAACTTTCT-AAAACTTATATTTTGACCCTAAAACTTT
1 TCCAAAATTACATTTTGACCCTAAAACTTTCTCAAAA-TTATATTTTGACCCCAAAACTTT
*
20275315 TCCAAAATTACATTTTGACCCTAAAATGTTTC-CAAAATTATATTTTGACCCCAAAACTTT
1 TCCAAAATTACATTTTGACCCTAAAA-CTTTCTCAAAATTATATTTTGACCCCAAAACTTT
* * * *
20275375 TCCAAAATTACATTTTGACCCCAAAACTTTCACAAAATTATATTTTAACCCTAAAAC-TT
1 TCCAAAATTACATTTTGACCCTAAAACTTTCTCAAAATTATATTTTGACCCCAAAACTTT
* * * *
20275434 TCCAAAATTACATTTTAACCCTAAAACTTTCTAAAAATTATATTTTGGCCCCTAAACTTT
1 TCCAAAATTACATTTTGACCCTAAAACTTTCTCAAAATTATATTTTGACCCCAAAACTTT
* *
20275494 TCCAAAATCATATTTTGACACC-AAAA-TTTC-CAAAA
1 TCCAAAATTACATTTTGAC-CCTAAAACTTTCTCAAAA
20275529 AAATTGCTTT
Statistics
Matches: 294, Mismatches: 33, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
58 4 0.01
59 74 0.25
60 193 0.66
61 23 0.08
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.37
Consensus pattern (60 bp):
TCCAAAATTACATTTTGACCCTAAAACTTTCTCAAAATTATATTTTGACCCCAAAACTTT
Found at i:20275277 original size:90 final size:89
Alignment explanation
Indices: 20275124--20275582 Score: 477
Period size: 90 Copynumber: 5.1 Consensus size: 89
20275114 CTTTGTAAGT
* * ** ** *
20275124 CCCTAAA-TTATCCAGAAATTACATTTCGACCCTAAAACTTTTTGAAAATTATATTTTGACCCCA
1 CCCTAAACTTTTCCA-AAATTATATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCCCA
*
20275188 AAACTTTTTGAAAATTACATTTTGAC
65 AAACTTTCT-AAAATTACATTTTGAC
* *
20275214 CCCTAAATTTTTCTAAAATTATATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCCCAA
1 CCCTAAACTTTTCCAAAATTATATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCCCAA
*
20275279 AACTTTCTAAAACTTATATTTTGA-
66 AACTTTCTAAAA-TTACATTTTGAC
* * *
20275303 CCCTAAAACTTTTCCAAAATTACATTTTGACCCTAAAA-TGTTTCCAAAATTATATTTTGACCCC
1 CCCT-AAACTTTTCCAAAATTATATTTTAACCCTAAAACT-TTTCCAAAATTACATTTTGACCCC
*
20275367 AAAACTTTTCCAAAATTACATTTTGAC
64 AAAAC-TTTCTAAAATTACATTTTGAC
* * *
20275394 CCCAAAAC-TTTCACAAAATTATATTTTAACCCTAAAAC-TTTCCAAAATTACATTTTAACCCTA
1 CCCTAAACTTTTC-CAAAATTATATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCCCA
* *
20275457 AAACTTTCTAAAAATTATATTTTGGC
65 AAACTTTCT-AAAATTACATTTTGAC
* * * * * *
20275483 CCCTAAACTTTTCCAAAATCATATTTTGACACC-AAAA--TTTCCAAAAAAATTGCTTTTTTAGC
1 CCCTAAACTTTTCCAAAATTATATTTTAAC-CCTAAAACTTTTCC---AAAATTACATTTTGACC
* * *
20275545 CCGAAACTTTCAAAAATTACCA-TTTCAC
62 CCAAAACTTTCTAAAATTA-CATTTTGAC
20275573 CCCTAAACTT
1 CCCTAAACTT
20275583 CCCTAAATCC
Statistics
Matches: 315, Mismatches: 39, Indels: 30
0.82 0.10 0.08
Matches are distributed among these distances:
88 9 0.03
89 79 0.25
90 188 0.60
91 39 0.12
ACGTcount: A:0.37, C:0.22, G:0.04, T:0.36
Consensus pattern (89 bp):
CCCTAAACTTTTCCAAAATTATATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCCCAA
AACTTTCTAAAATTACATTTTGAC
Found at i:20275619 original size:58 final size:58
Alignment explanation
Indices: 20275557--20275686 Score: 190
Period size: 58 Copynumber: 2.2 Consensus size: 58
20275547 GAAACTTTCA
* *
20275557 AAAATTACCATTTCACCC-CTAAACTTCCCTAAATCCCATTTTAAACCTCGATTTCACT
1 AAAATTACCATTTCACCCTC-AAACTTCCCTAAATCCCATTTTAAACCCCGATTTCACC
* * *
20275615 AAAATTACCATTTCACCTTCAAACTTCCCTAAATCCTATTTTTAACCCCGATTTCACC
1 AAAATTACCATTTCACCCTCAAACTTCCCTAAATCCCATTTTAAACCCCGATTTCACC
20275673 AAAATCTACCATTT
1 AAAAT-TACCATTT
20275687 TGTCCCCGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
58 56 0.86
59 9 0.14
ACGTcount: A:0.33, C:0.32, G:0.02, T:0.34
Consensus pattern (58 bp):
AAAATTACCATTTCACCCTCAAACTTCCCTAAATCCCATTTTAAACCCCGATTTCACC
Found at i:20278448 original size:18 final size:20
Alignment explanation
Indices: 20278425--20278468 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
20278415 TATTTTGTAA
20278425 TATTTT-AA-ATATATATTT
1 TATTTTAAATATATATATTT
20278443 TATTTTAAATATATATATTT
1 TATTTTAAATATATATATTT
20278463 TATTTT
1 TATTTT
20278469 TGGTGGAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 6 0.25
19 2 0.08
20 16 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TATTTTAAATATATATATTT
Found at i:20278720 original size:201 final size:203
Alignment explanation
Indices: 20278456--20278903 Score: 645
Period size: 203 Copynumber: 2.2 Consensus size: 203
20278446 TTTAAATATA
* * *
20278456 TATATTTTATTTTTGGTGGAATCATTCTAAATGACT-CCACCAATTCCTAATGTATGCTTTAATT
1 TATATTTTATTTTTGGTGGACT-ATTCTAAAT-AGTGCCACCAATTCCCAATGTATGCTTTAATT
* ** *
20278520 TATGT-ATTTTTTTGTTTATTATTTATTTTTTATAATTTTAACTTTATTTCTTTTTGGTGGAGTC
64 TATGTAATTTTTTTGTTTATTATTTATTTTTTAAAATTTTAAAATTATTTATTTTTGGTGGAG-C
* *
20278584 -ATTTTAAATGGAGCCACCAATACAC-TTTTACTATTATTTGT-TTTTTATTATTTATTTTATAA
128 AATTCTAAATGGAGCCACCAATACACTTTTTACTATTATTTGTCTTTTTATTATTTATTTTACAA
20278646 TATTTTAAATG
193 TATTTTAAATG
* *
20278657 TATATTTTATTTTTGGTGGAGCTATTCTAAATAGTGCCACCAGTTCCCAATGTATGTTTTAATTT
1 TATATTTTATTTTTGGTGGA-CTATTCTAAATAGTGCCACCAATTCCCAATGTATGCTTTAATTT
20278722 ATGTACATTTTTTTGTTTATTATTTATTTTTTAAAATTTTAAAATTATTTATTTTTGGTGGAGCA
65 ATGTA-ATTTTTTTGTTTATTATTTATTTTTTAAAATTTTAAAATTATTTATTTTTGGTGGAGCA
* * * *
20278787 ATTCTAAATGGCGTCACCAATTCACTTTTTACTATTATTTGTCTTTTTATTATTTGTTTTACAAT
129 ATTCTAAATGGAGCCACCAATACACTTTTTACTATTATTTGTCTTTTTATTATTTATTTTACAAT
20278852 ATTTTAAATG
194 ATTTTAAATG
* * *
20278862 TATATTTTATTTTTGGTGGAACCATTCTAAATGGGGCCACCA
1 TATATTTTATTTTTGGTGG-ACTATTCTAAATAGTGCCACCA
20278904 TCCTTGGTGT
Statistics
Matches: 221, Mismatches: 18, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
200 2 0.01
201 59 0.27
202 2 0.01
203 74 0.33
204 16 0.07
205 67 0.30
206 1 0.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.52
Consensus pattern (203 bp):
TATATTTTATTTTTGGTGGACTATTCTAAATAGTGCCACCAATTCCCAATGTATGCTTTAATTTA
TGTAATTTTTTTGTTTATTATTTATTTTTTAAAATTTTAAAATTATTTATTTTTGGTGGAGCAAT
TCTAAATGGAGCCACCAATACACTTTTTACTATTATTTGTCTTTTTATTATTTATTTTACAATAT
TTTAAATG
Found at i:20278903 original size:98 final size:97
Alignment explanation
Indices: 20278524--20278903 Score: 321
Period size: 96 Copynumber: 3.8 Consensus size: 97
20278514 TTAATTTATG
* * * * *
20278524 TATTTTTTTGTTTATTATTTATTTT-TTATAATTTTAACT-T-TA-TTTCTTTTTGGTGGAGTCA
1 TATTTGTTT-TTTATTATTTATTTTATAAT-ATTTTAAATGTATATTTTATTTTTGGTGGAGCCA
* *
20278585 TTTTAAATGGAGCCACCAATACAC-TTTTACTAT
64 TTCTAAATGGAGCCACCAATTCACTTTTTACTAT
*
20278618 TATTTGTTTTTTATTATTTATTTTATAATATTTTAAATGTATATTTTATTTTTGGTGGAGCTATT
1 TATTTGTTTTTTATTATTTATTTTATAATATTTTAAATGTATATTTTATTTTTGGTGGAGCCATT
* * * * *
20278683 CTAAATAGTGCCACCAGTTCCCAATGTATGTTTTAATTTAT
66 CTAAATGGAGCCACCAATT--C-A---CT-TTTT-A-CTAT
* * *
20278724 GTACATTT-TTTTGTT-TATTATTTATTTTTTAAAATTTTAAA-AT-TA-TTTATTTTTGGTGGA
1 -T--ATTTGTTTT-TTAT-T-ATTTATTTTATAATATTTTAAATGTATATTTTATTTTTGGTGGA
* * *
20278784 GCAATTCTAAATGGCGTCACCAATTCACTTTTTACTAT
60 GCCATTCTAAATGGAGCCACCAATTCACTTTTTACTAT
* * *
20278822 TATTTGTCTTTTTATTATTTGTTTTACAATATTTTAAATGTATATTTTATTTTTGGTGGAACCAT
1 TATTTGT-TTTTTATTATTTATTTTATAATATTTTAAATGTATATTTTATTTTTGGTGGAGCCAT
*
20278887 TCTAAATGGGGCCACCA
65 TCTAAATGGAGCCACCA
20278904 TCCTTGGTGT
Statistics
Matches: 228, Mismatches: 32, Indels: 48
0.74 0.10 0.16
Matches are distributed among these distances:
93 23 0.10
94 12 0.05
95 24 0.11
96 37 0.16
97 7 0.03
98 37 0.16
99 2 0.01
100 4 0.02
101 1 0.00
104 5 0.02
105 2 0.01
106 3 0.01
107 36 0.16
108 7 0.03
109 8 0.04
110 20 0.09
ACGTcount: A:0.26, C:0.10, G:0.11, T:0.53
Consensus pattern (97 bp):
TATTTGTTTTTTATTATTTATTTTATAATATTTTAAATGTATATTTTATTTTTGGTGGAGCCATT
CTAAATGGAGCCACCAATTCACTTTTTACTAT
Found at i:20281961 original size:21 final size:21
Alignment explanation
Indices: 20281915--20281965 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
20281905 GATAAATGGT
*
20281915 ATGCAAA-AATATAAAATACA
1 ATGCAAATAATAAAAAATACA
20281935 AGTGCATAATAATAAAAAATA-A
1 A-TGCA-AATAATAAAAAATACA
20281957 ATGCAAATA
1 ATGCAAATA
20281966 TTGATGAGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 5 0.19
21 8 0.30
22 4 0.15
23 10 0.37
ACGTcount: A:0.63, C:0.08, G:0.08, T:0.22
Consensus pattern (21 bp):
ATGCAAATAATAAAAAATACA
Found at i:20282080 original size:30 final size:29
Alignment explanation
Indices: 20282022--20282198 Score: 155
Period size: 30 Copynumber: 6.0 Consensus size: 29
20282012 TGGATGCTTG
* **
20282022 GGGGT-AAAATGGTAAATTTTACAAGTTTC
1 GGGGTAAAAAT-GTAATTTTTGGAAGTTTC
*
20282051 GAGGTCAAAAATGTAATTTTT-GATAGTTTC
1 GGGGT-AAAAATGTAATTTTTGGA-AGTTTC
* * * * * *
20282081 AGGGTTAAAAATGGAATTATTGAAAGCTTA
1 -GGGGTAAAAATGTAATTTTTGGAAGTTTC
*
20282111 GGGGT-AAAATGTAATTTTTGGAAGTTTT
1 GGGGTAAAAATGTAATTTTTGGAAGTTTC
20282139 GGGGTTAAAAATGTAATTTTTGGAAG-TTC
1 GGGG-TAAAAATGTAATTTTTGGAAGTTTC
20282168 AAGGGGTAAAAATGTAATTTTTGGATAGTTT
1 --GGGGTAAAAATGTAATTTTTGGA-AGTTT
20282199 AGGGACCTCC
Statistics
Matches: 120, Mismatches: 17, Indels: 19
0.77 0.11 0.12
Matches are distributed among these distances:
28 22 0.18
29 12 0.10
30 69 0.57
31 15 0.12
32 2 0.02
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.37
Consensus pattern (29 bp):
GGGGTAAAAATGTAATTTTTGGAAGTTTC
Found at i:20282122 original size:58 final size:59
Alignment explanation
Indices: 20282057--20282202 Score: 192
Period size: 58 Copynumber: 2.5 Consensus size: 59
20282047 TTTCGAGGTC
20282057 AAAAATGTAATTTTT-GATAGTTTCAGGGTTAAAAATGGAATTATTGAAAGCTT-AGGGGT
1 AAAAATGTAATTTTTGGATAGTTT-AGGGTTAAAAATGGAATTATTGAAAG-TTAAGGGGT
* * * *
20282116 -AAAATGTAATTTTTGGA-AGTTTTGGGGTTAAAAATGTAATTTTTGGAAGTTCAAGGGGT
1 AAAAATGTAATTTTTGGATAG-TTTAGGGTTAAAAATGGAATTATTGAAAGTT-AAGGGGT
20282175 AAAAATGTAATTTTTGGATAGTTTAGGG
1 AAAAATGTAATTTTTGGATAGTTTAGGG
20282203 ACCTCCAGGG
Statistics
Matches: 76, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
57 2 0.03
58 38 0.50
59 11 0.14
60 23 0.30
61 2 0.03
ACGTcount: A:0.35, C:0.02, G:0.25, T:0.38
Consensus pattern (59 bp):
AAAAATGTAATTTTTGGATAGTTTAGGGTTAAAAATGGAATTATTGAAAGTTAAGGGGT
Found at i:20282154 original size:88 final size:89
Alignment explanation
Indices: 20282017--20282186 Score: 220
Period size: 88 Copynumber: 1.9 Consensus size: 89
20282007 AGACTTGGAT
*
20282017 GCTTGGGGGTAAAATGGTAAATTTTACAAGTTTCGAGGTCAAAAATGTAATTTTT-GATAGTTTC
1 GCTTAGGGGTAAAATGGTAAATTTTACAAGTTTCGAGGTCAAAAATGTAATTTTTGGA-AG-TTC
*
20282081 -AGGGTTAAAAATGGAATTATTGAAA
64 AAGGGGTAAAAATGGAATTATTGAAA
* ** * * *
20282106 GCTTAGGGGTAAAAT-GTAATTTTTGGAAGTTTTGGGGTTAAAAATGTAATTTTTGGAAGTTCAA
1 GCTTAGGGGTAAAATGGTAAATTTTACAAGTTTCGAGGTCAAAAATGTAATTTTTGGAAGTTCAA
*
20282170 GGGGTAAAAATGTAATT
66 GGGGTAAAAATGGAATT
20282187 TTTGGATAGT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
87 3 0.04
88 51 0.73
89 16 0.23
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (89 bp):
GCTTAGGGGTAAAATGGTAAATTTTACAAGTTTCGAGGTCAAAAATGTAATTTTTGGAAGTTCAA
GGGGTAAAAATGGAATTATTGAAA
Found at i:20282812 original size:20 final size:21
Alignment explanation
Indices: 20282782--20282821 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
20282772 AAACTCAGAA
20282782 TCCGACCGTCCACTACCGCGG
1 TCCGACCGTCCACTACCGCGG
*
20282803 TCCG-CCGTCCACTATCGCG
1 TCCGACCGTCCACTACCGCG
20282822 TCCTTGCCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.12, C:0.47, G:0.23, T:0.17
Consensus pattern (21 bp):
TCCGACCGTCCACTACCGCGG
Found at i:20283306 original size:13 final size:13
Alignment explanation
Indices: 20283290--20283321 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
20283280 TATTAAACAT
*
20283290 TTATTTATTATTA
1 TTATTAATTATTA
20283303 TTATTAATTATTA
1 TTATTAATTATTA
20283316 TTATTA
1 TTATTA
20283322 TGGTTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTATTAATTATTA
Found at i:20283341 original size:22 final size:22
Alignment explanation
Indices: 20283291--20283349 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
20283281 ATTAAACATT
** *
20283291 TATTTATTATTATTATTAATTA
1 TATTTATTATGGTTATTAATAA
20283313 T-TATTATTATGGTTATTAATAA
1 TAT-TTATTATGGTTATTAATAA
20283335 TATTTATTA-GGTTAT
1 TATTTATTATGGTTAT
20283350 AACTTAACAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 7 0.22
22 24 0.75
23 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (22 bp):
TATTTATTATGGTTATTAATAA
Found at i:20284018 original size:16 final size:16
Alignment explanation
Indices: 20283997--20284032 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
20283987 AGTTTTTGTG
20283997 TTGGGTAGAAATGAAA
1 TTGGGTAGAAATGAAA
20284013 TTGGGTAGAAATGAAA
1 TTGGGTAGAAATGAAA
20284029 TTGG
1 TTGG
20284033 TCCAAATTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.28
Consensus pattern (16 bp):
TTGGGTAGAAATGAAA
Found at i:20286746 original size:17 final size:17
Alignment explanation
Indices: 20286726--20286768 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
20286716 AAATGAACTA
* *
20286726 ACAAGTAAAATGCAATT
1 ACAACTAAAATGCAATG
20286743 ACAACTAAAATGCAATG
1 ACAACTAAAATGCAATG
*
20286760 ACAATTAAA
1 ACAACTAAA
20286769 TAAGATGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.56, C:0.14, G:0.09, T:0.21
Consensus pattern (17 bp):
ACAACTAAAATGCAATG
Found at i:20291930 original size:18 final size:18
Alignment explanation
Indices: 20291907--20291953 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
20291897 GAGCTTGTAG
20291907 CTGCATCTGGTTGTATGA
1 CTGCATCTGGTTGTATGA
* *
20291925 CTGCATCTGATTTTATGA
1 CTGCATCTGGTTGTATGA
20291943 -TCGCATCTGGT
1 CT-GCATCTGGT
20291954 CCGGTTGCGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 1 0.04
18 24 0.96
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.40
Consensus pattern (18 bp):
CTGCATCTGGTTGTATGA
Found at i:20298245 original size:21 final size:21
Alignment explanation
Indices: 20298219--20298269 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
20298209 ATGACTTATT
* * *
20298219 TCGGTAGAAGAGTCTCTTGTA
1 TCGGTAAAACAGTCACTTGTA
*
20298240 TCGGTAAAACTGTCACTTGTA
1 TCGGTAAAACAGTCACTTGTA
20298261 TCGGTAAAA
1 TCGGTAAAA
20298270 GTTTGCACTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (21 bp):
TCGGTAAAACAGTCACTTGTA
Found at i:20302975 original size:16 final size:15
Alignment explanation
Indices: 20302948--20302978 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
20302938 TGAAATAAGG
20302948 AAATAAAAAAATATA
1 AAATAAAAAAATATA
20302963 AAATAAAATAAATATA
1 AAATAAAA-AAATATA
20302979 TAACTATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAATAAAAAAATATA
Found at i:20304110 original size:42 final size:42
Alignment explanation
Indices: 20304057--20304570 Score: 600
Period size: 42 Copynumber: 12.6 Consensus size: 42
20304047 CTTAATTTAA
* *
20304057 GGGTAAAAGATTGGATGATATCTTCAATCTGCCCTATGATCG
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATCG
* * * * **
20304099 AGGTAAGAGATTGGTTGATGTCTTCAATCTACCCTCTGATTA
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATCG
* * * **
20304141 GGGTAAAAGATTGGAT--TGTCTTCAATTTGCCTTATGATTA
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATCG
*
20304181 GGGTAAGAGATTGGATG--G-CTTCAATCTG-CCTCATGGTCG
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCT-ATGATCG
* * *
20304220 GGGTAAGATATTAGATGATGTCTTCAATCTGCCCCATGATCG
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATCG
* *
20304262 GGGTAAGCGATTGGATG--G-CTTCAATCTGCCCTTTGATCG
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATCG
*
20304301 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCG
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATCG
*
20304343 GGGTAAGAGATT-GA--ATGGCTTCAATCTGCCC-ATTGATCG
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTA-TGATCG
*
20304382 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCG
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATCG
* *
20304424 GGGTAAGAGATTGGATG--G-CTTCAATCTGCCCCATGATTG
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATCG
20304463 GGGTAAGAGATTGGATGATGTCTTCAATCTG-CCTCATGATCG
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCT-ATGATCG
* * * * *
20304505 AGGTAAGAGATTGGATG--GT-TTCAAACTGCCCCATAATCA
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATCG
20304544 GGGTAAGAGATTGGATGATGTCTTCAA
1 GGGTAAGAGATTGGATGATGTCTTCAA
20304571 AGAGATTGGA
Statistics
Matches: 406, Mismatches: 44, Indels: 44
0.82 0.09 0.09
Matches are distributed among these distances:
38 3 0.01
39 163 0.40
40 44 0.11
41 9 0.02
42 184 0.45
43 3 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATCG
Found at i:20304224 original size:39 final size:39
Alignment explanation
Indices: 20304078--20304560 Score: 538
Period size: 39 Copynumber: 12.0 Consensus size: 39
20304068 TGGATGATAT
* * *
20304078 CTTCAATCTGCCCTATGATCGAGGTAAGAGATTGGTTGATGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATT-G--GATGG
* ** * *
20304120 CTTCAATCTACCCTC-TGATTAGGGTAAAAGATTGGATTGT
1 CTTCAATCTGCCC-CATGATCGGGGTAAGAGATTGGA-TGG
* ** **
20304160 CTTCAATTTGCCTTATGATTAGGGTAAGAGATTGGATGG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGG
* * * *
20304199 CTTCAATCTGCCTCATGGTCGGGGTAAGATATTAGATGATGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATT-G--GATGG
*
20304241 CTTCAATCTGCCCCATGATCGGGGTAAGCGATTGGATGG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGG
**
20304280 CTTCAATCTGCCCTTTGATCGGGGTAAGAGATTGGATGATG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATG--G
*
20304321 TCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGAATGG
1 -CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGG
20304361 CTTCAATCTG-CCCATTGATCGGGGTAAGAGATTGGATGATG
1 CTTCAATCTGCCCCA-TGATCGGGGTAAGAGATTGGATG--G
20304402 TCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGG
1 -CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGG
*
20304442 CTTCAATCTGCCCCATGATTGGGGTAAGAGATTGGATGATG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATG--G
* *
20304483 TCTTCAATCTGCCTCATGATCGAGGTAAGAGATTGGATGG
1 -CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGG
* * * *
20304523 TTTCAAACTGCCCCATAATCAGGGTAAGAGATTGGATG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATG
20304561 ATGTCTTCAA
Statistics
Matches: 383, Mismatches: 41, Indels: 37
0.83 0.09 0.08
Matches are distributed among these distances:
38 4 0.01
39 171 0.45
40 37 0.10
41 5 0.01
42 162 0.42
43 4 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (39 bp):
CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGG
Found at i:20304266 original size:81 final size:80
Alignment explanation
Indices: 20304057--20304570 Score: 681
Period size: 81 Copynumber: 6.3 Consensus size: 80
20304047 CTTAATTTAA
* * * * *
20304057 GGGTAAAAGATTGGATGATATCTTCAATCTGCCCTATGATCGAGGTAAGAGATTGGTTGATGTCT
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATT-G--GATGGCT
* * **
20304122 TCAATCTACCCTCTGATTA
63 TCAATCTGCCC-ATGATCG
* * ** **
20304141 GGGTAAAAGATTGGAT--TGTCTTCAATTTGCCTTATGATTAGGGTAAGAGATTGGATGGCTTCA
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTTCA
*
20304204 ATCTGCCTCATGGTCG
66 ATCTGCC-CATGATCG
* * *
20304220 GGGTAAGATATTAGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGCGATTGGATGGCTTCA
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTTCA
*
20304285 ATCTGCCCTTTGATCG
66 ATCTGCCC-ATGATCG
*
20304301 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGAATGGCTTCA
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTTCA
20304366 ATCTGCCCATTGATCG
66 ATCTGCCCA-TGATCG
20304382 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTTCA
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTTCA
*
20304447 ATCTGCCCCATGATTG
66 ATCTG-CCCATGATCG
* * *
20304463 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCTCATGATCGAGGTAAGAGATTGGATGGTTTCA
1 GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTTCA
* * *
20304528 AACTGCCCCATAATCA
66 ATCTG-CCCATGATCG
20304544 GGGTAAGAGATTGGATGATGTCTTCAA
1 GGGTAAGAGATTGGATGATGTCTTCAA
20304571 AGAGATTGGA
Statistics
Matches: 387, Mismatches: 37, Indels: 15
0.88 0.08 0.03
Matches are distributed among these distances:
79 31 0.08
80 2 0.01
81 304 0.79
82 34 0.09
84 16 0.04
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (80 bp):
GGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTTCA
ATCTGCCCATGATCG
Found at i:20304587 original size:19 final size:21
Alignment explanation
Indices: 20304548--20304589 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
20304538 TAATCAGGGT
20304548 AAGAGATTGGATGATGTCTTCA
1 AAGAGATTGGATGA-GTCTTCA
20304570 AAGAGATTGGATG-G-CTTCA
1 AAGAGATTGGATGAGTCTTCA
20304589 A
1 A
20304590 TTTGCCTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 1 0.05
22 13 0.65
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (21 bp):
AAGAGATTGGATGAGTCTTCA
Found at i:20304600 original size:100 final size:102
Alignment explanation
Indices: 20304467--20304667 Score: 316
Period size: 100 Copynumber: 2.0 Consensus size: 102
20304457 TGATTGGGGT
**
20304467 AAGAGATTGGATGATGTCTTCAATCTGCCTCATGATCGAGGTAAGAGATTGGATGGTTTCAAACT
1 AAGAGATTGGATGA-GTCTTCAATCTGCCTCATGATCGAGGTAAGAGATTGGATGGCATCAAACT
20304532 GCCCCATAATCAGGGTAAGAGATTGGATGATGTCTTCA
65 GCCCCATAATCAGGGTAAGAGATTGGATGATGTCTTCA
* * *
20304570 AAGAGATTGGATG-G-CTTCAATTTGCCTCATGATTGAGGTAAGAGATTGGATGGCATCAATCTG
1 AAGAGATTGGATGAGTCTTCAATCTGCCTCATGATCGAGGTAAGAGATTGGATGGCATCAAACTG
* *
20304633 CCTCATAATCGGGGTAAGAGATTGGATGATGTCTT
66 CCCCATAATCAGGGTAAGAGATTGGATGATGTCTT
20304668 GAATTTACTC
Statistics
Matches: 91, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
100 77 0.85
101 1 0.01
103 13 0.14
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.30
Consensus pattern (102 bp):
AAGAGATTGGATGAGTCTTCAATCTGCCTCATGATCGAGGTAAGAGATTGGATGGCATCAAACTG
CCCCATAATCAGGGTAAGAGATTGGATGATGTCTTCA
Found at i:20304613 original size:39 final size:39
Alignment explanation
Indices: 20304570--20304981 Score: 302
Period size: 40 Copynumber: 10.4 Consensus size: 39
20304560 GATGTCTTCA
* * *
20304570 AAGAGATTGGATGGCTTCAATTTGCCTCATGATTGAGGT
1 AAGAGATTGGATGGCTTCAATCTGCCTCATGATCGGGGT
* *
20304609 AAGAGATTGGATGGCATCAATCTGCCTCATAATCGGGGT
1 AAGAGATTGGATGGCTTCAATCTGCCTCATGATCGGGGT
* ** *
20304648 AAGAGATTGGATGATGTCTTGAAT-TTACTCCATGATTGGGGT
1 AAGAGATTGGATG--G-CTTCAATCTGCCT-CATGATCGGGGT
* * *
20304690 AAGAGATTGGATGGCTTCAATCTGCCCCGTGATCGGGGC
1 AAGAGATTGGATGGCTTCAATCTGCCTCATGATCGGGGT
* * *
20304729 AAGAGATTAGATGATGTCTTAAATCTACCTCATGATCGGGGT
1 AAGAGATT-G--GATGGCTTCAATCTGCCTCATGATCGGGGT
* * *
20304771 AAGAGATTAGATGGTCCTCAATCTGCCCCATGATCGGGGT
1 AAGAGATTGGATGG-CTTCAATCTGCCTCATGATCGGGGT
**
20304811 AAGAGATTGG-TGTGTCTTCAATCTGCCCTC-TGATTAGGGT
1 AAGAGATTGGATG-G-CTTCAATCTG-CCTCATGATCGGGGT
* * * ***
20304851 AAGAGATTGGAT-GCTTTAATCAGCCT-TTGGATTAAGGT
1 AAGAGATTGGATGGCTTCAATCTGCCTCAT-GATCGGGGT
* * **
20304889 AAAAGATTGG-TGTGTCTTCAATCTGCC-CTTTGA-CTAAGGT
1 AAGAGATTGGATG-G-CTTCAATCTGCCTC-ATGATC-GGGGT
* * *
20304929 AAAAGATTGGAT-GTTTCAATTTGCCTCATGATCGGGGT
1 AAGAGATTGGATGGCTTCAATCTGCCTCATGATCGGGGT
* *
20304967 AAGATATTGGGTGGC
1 AAGAGATTGGATGGC
20304982 AACTTCGCTT
Statistics
Matches: 298, Mismatches: 51, Indels: 48
0.75 0.13 0.12
Matches are distributed among these distances:
37 5 0.02
38 50 0.17
39 82 0.28
40 90 0.30
41 11 0.04
42 60 0.20
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (39 bp):
AAGAGATTGGATGGCTTCAATCTGCCTCATGATCGGGGT
Found at i:20304702 original size:42 final size:40
Alignment explanation
Indices: 20304570--20304976 Score: 288
Period size: 39 Copynumber: 10.2 Consensus size: 40
20304560 GATGTCTTCA
* * *
20304570 AAGAGATTGGATG-G-CTTCAATTTGCCTCATGATTGAGGT
1 AAGAGATTGGATGTGTCTTCAATCTGCC-CATGATCGGGGT
* *
20304609 AAGAGATTGGATG-G-CATCAATCTGCCTCATAATCGGGGT
1 AAGAGATTGGATGTGTCTTCAATCTGCC-CATGATCGGGGT
* * * *
20304648 AAGAGATTGGATGATGTCTTGAATTTACTCCATGATTGGGGT
1 AAGAGATTGGATG-TGTCTTCAATCTGC-CCATGATCGGGGT
* *
20304690 AAGAGATTGGATG-G-CTTCAATCTGCCCCGTGATCGGGGC
1 AAGAGATTGGATGTGTCTTCAATCTG-CCCATGATCGGGGT
* * *
20304729 AAGAGATTAGATGATGTCTTAAATCTACCTCATGATCGGGGT
1 AAGAGATTGGATG-TGTCTTCAATCTGCC-CATGATCGGGGT
* *
20304771 AAGAGATTAGATG-GTCCTCAATCTGCCCCATGATCGGGGT
1 AAGAGATTGGATGTGTCTTCAATCTG-CCCATGATCGGGGT
* **
20304811 AAGAGATTGG-TGTGTCTTCAATCTGCCCTCTGATTAGGGT
1 AAGAGATTGGATGTGTCTTCAATCTGCCC-ATGATCGGGGT
* * ** ***
20304851 AAGAGATTGGA--TG-CTTTAATCAGCCTTTGGATTAAGGT
1 AAGAGATTGGATGTGTCTTCAATCTGCCCAT-GATCGGGGT
* * **
20304889 AAAAGATTGG-TGTGTCTTCAATCTGCCCTTTGA-CTAAGGT
1 AAGAGATTGGATGTGTCTTCAATCTGCCC-ATGATC-GGGGT
* *
20304929 AAAAGATTGGA--TGT-TTCAATTTGCCTCATGATCGGGGT
1 AAGAGATTGGATGTGTCTTCAATCTGCC-CATGATCGGGGT
*
20304967 AAGATATTGG
1 AAGAGATTGG
20304977 GTGGCAACTT
Statistics
Matches: 300, Mismatches: 46, Indels: 45
0.77 0.12 0.12
Matches are distributed among these distances:
37 1 0.00
38 51 0.17
39 90 0.30
40 88 0.29
41 8 0.03
42 61 0.20
43 1 0.00
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.31
Consensus pattern (40 bp):
AAGAGATTGGATGTGTCTTCAATCTGCCCATGATCGGGGT
Found at i:20304702 original size:81 final size:80
Alignment explanation
Indices: 20304597--20304863 Score: 340
Period size: 81 Copynumber: 3.3 Consensus size: 80
20304587 CAATTTGCCT
* * *
20304597 CATGATTGAGGTAAGAGATTGGATGGCATCAATCTGCCTCATAATCGGGGTAAGAGATTGGATGA
1 CATGATTGGGGTAAGAGATTGGATGGCATCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGA
* *
20304662 TGTCTTGAATTTACTC
66 TGTCTTAAATCTAC-C
* * * *
20304678 CATGATTGGGGTAAGAGATTGGATGGCTTCAATCTGCCCCGTGATCGGGGCAAGAGATTAGATGA
1 CATGATTGGGGTAAGAGATTGGATGGCATCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGA
20304743 TGTCTTAAATCTACC
66 TGTCTTAAATCTACC
* * *
20304758 TCATGATCGGGGTAAGAGATTAGATGGTCCTCAATCTGCCCCATGATCGGGGTAAGAGATTGG-T
1 -CATGATTGGGGTAAGAGATTGGATGG-CATCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* *
20304822 G-TGTCTTCAATCTGCC
64 GATGTCTTAAATCTACC
* *
20304838 CTCTGATTAGGGTAAGAGATTGGATG
1 C-ATGATTGGGGTAAGAGATTGGATG
20304864 CTTTAATCAG
Statistics
Matches: 162, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 34 0.21
81 96 0.59
82 31 0.19
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (80 bp):
CATGATTGGGGTAAGAGATTGGATGGCATCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGA
TGTCTTAAATCTACC
Found at i:20304717 original size:181 final size:183
Alignment explanation
Indices: 20304386--20304748 Score: 507
Period size: 181 Copynumber: 2.0 Consensus size: 183
20304376 TGATCGGGGT
* *
20304386 AAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTTCAATCT
1 AAGAGATTGGATGA-GTCTTCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGGCATCAATCT
* * *
20304451 GCCCCATGATTGGGGTAAGAGATTGGATGATGTCTTCAATCTGCCTCATGATCGAGGTAAGAGAT
65 GCCCCATAATCGGGGTAAGAGATTGGATGATGTCTTCAATCTACCTCATGATCGAGGTAAGAGAT
* * *
20304516 TGGATGGTTTCAAACTGCCCCATAATCAGGGTAAGAGATTGGATGATGTCTTCA
130 TGGATGGCTTCAAACTGCCCCATAATCAGGGCAAGAGATTAGATGATGTCTTCA
* * *
20304570 AAGAGATTGGATG-G-CTTCAATTTGCCTCATGATTGAGGTAAGAGATTGGATGGCATCAATCTG
1 AAGAGATTGGATGAGTCTTCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGGCATCAATCTG
* * * * *
20304633 CCTCATAATCGGGGTAAGAGATTGGATGATGTCTTGAATTTA-CTCCATGATTGGGGTAAGAGAT
66 CCCCATAATCGGGGTAAGAGATTGGATGATGTCTTCAATCTACCT-CATGATCGAGGTAAGAGAT
* * * *
20304697 TGGATGGCTTCAATCTGCCCCGTGATCGGGGCAAGAGATTAGATGATGTCTT
130 TGGATGGCTTCAAACTGCCCCATAATCAGGGCAAGAGATTAGATGATGTCTT
20304749 AAATCTACCT
Statistics
Matches: 158, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
180 2 0.01
181 142 0.90
182 1 0.01
184 13 0.08
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (183 bp):
AAGAGATTGGATGAGTCTTCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGGCATCAATCTG
CCCCATAATCGGGGTAAGAGATTGGATGATGTCTTCAATCTACCTCATGATCGAGGTAAGAGATT
GGATGGCTTCAAACTGCCCCATAATCAGGGCAAGAGATTAGATGATGTCTTCA
Found at i:20304976 original size:78 final size:79
Alignment explanation
Indices: 20304570--20304976 Score: 269
Period size: 81 Copynumber: 5.1 Consensus size: 79
20304560 GATGTCTTCA
* * * * *
20304570 AAGAGATTGGATG-G-CTTCAATTTG-CCTCATGATTGAGGTAAGAGATTGGATGGC-ATCAATC
1 AAGAGATTGG-TGTGTCTTCAATCTGCCCTC-TGACTAAGGTAAAAGATTGGAT-GCTTTCAATC
*
20304631 TGCCTCATAATCGGGGT
63 TGCCTCATGATCGGGGT
* * * * * ** *
20304648 AAGAGATTGGATGATGTCTTGAATTTACTCC-ATGATTGGGGTAAGAGATTGGATGGC-TTCAAT
1 AAGAGATTGG-TG-TGTCTTCAATCTGC-CCTCTGACTAAGGTAAAAGATTGGAT-GCTTTCAAT
* * *
20304711 CTGCCCCGTGATCGGGGC
62 CTGCCTCATGATCGGGGT
* * * ** * * * *
20304729 AAGAGATTAGATGATGTCTTAAATCT-ACCTCATGA-TCGGGGTAAGAGATTAGATGGTCCTCAA
1 AAGAGATT-GGTG-TGTCTTCAATCTGCCCTC-TGACT-AAGGTAAAAGATTGGATGCT-TTCAA
*
20304792 TCTGCCCCATGATCGGGGT
61 TCTGCCTCATGATCGGGGT
* * * *
20304811 AAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGTAAGAGATTGGATGCTTT-AATCAGC
1 AAGAGATTGGTGTGTCTTCAATCTGCCCTCTGACTAAGGTAAAAGATTGGATGCTTTCAATCTGC
* ***
20304875 CT-TTGGATTAAGGT
66 CTCAT-GATCGGGGT
* * *
20304889 AAAAGATTGGTGTGTCTTCAATCTGCCCTTTGACTAAGGTAAAAGATTGGATG-TTTCAATTTGC
1 AAGAGATTGGTGTGTCTTCAATCTGCCCTCTGACTAAGGTAAAAGATTGGATGCTTTCAATCTGC
20304953 CTCATGATCGGGGT
66 CTCATGATCGGGGT
*
20304967 AAGATATTGG
1 AAGAGATTGG
20304977 GTGGCAACTT
Statistics
Matches: 268, Mismatches: 45, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
77 4 0.01
78 95 0.35
79 4 0.01
80 34 0.13
81 99 0.37
82 30 0.11
83 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.31
Consensus pattern (79 bp):
AAGAGATTGGTGTGTCTTCAATCTGCCCTCTGACTAAGGTAAAAGATTGGATGCTTTCAATCTGC
CTCATGATCGGGGT
Found at i:20305257 original size:49 final size:49
Alignment explanation
Indices: 20305204--20305731 Score: 285
Period size: 49 Copynumber: 10.8 Consensus size: 49
20305194 TCATCTTCAG
** * *
20305204 GGTATAAGATTCACCGTTGCGGAC-TCAATCTTTCCCTTTACACTTCTAA
1 GGTATAAGATTCGTCGTTGCGG-CTTCAACCTTTCCCTTCACACTTCTAA
* * * ** * *
20305253 GGTATAAGGTTCGTCGTTACAGCTTCAACCTTAACCTCCACATCTT-TAG
1 GGTATAAGATTCGTCGTTGCGGCTTCAACCTTTCCCTTCACA-CTTCTAA
* * *
20305302 GGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCCATCACATCTT-TAT
1 GGTATAAGATTCGTCGTTGCGGCTTCAACCTTTCCCTTCACA-CTTCTAA
* * ** * * *
20305351 GGTATAAGGTTCGCCGTTGCGATTTCAACCTTTCCCTCCATA-TCTCTAT
1 GGTATAAGATTCGTCGTTGCGGCTTCAACCTTTCCCTTCACACT-TCTAA
* * * * * *
20305400 GGTACAAGATTCATCGTTACGGCTTCAATCTTTCCCATCACA-TCACTAA
1 GGTATAAGATTCGTCGTTGCGGCTTCAACCTTTCCCTTCACACT-TCTAA
* * * * *
20305449 GGTATAAGGTTCGTCGTTGCGACTTCAACCTTTCCCTCCATATCTTC-AT
1 GGTATAAGATTCGTCGTTGCGGCTTCAACCTTTCCCTTCACA-CTTCTAA
* * * * * * ** *
20305498 GGTATAAGGTTCATCGCTGTGGCTTTAATCTTTCCGATCATA--TCTAA
1 GGTATAAGATTCGTCGTTGCGGCTTCAACCTTTCCCTTCACACTTCTAA
* * *
20305545 GGTATAAGGTTCG-CTGTTGCGGCTTCAACCTTTCCC-TCAGTA-TCTCTAT
1 GGTATAAGATTCGTC-GTTGCGGCTTCAACCTTTCCCTTCA-CACT-TCTAA
* * * * * *
20305594 GGTACAAGATTCGCCGTTGCAGCTTCAATCTTTCCCATCAC-GTCTCTAA
1 GGTATAAGATTCGTCGTTGCGGCTTCAACCTTTCCCTTCACACT-TCTAA
* * *** *
20305643 GGTACAAGGTTTACCGTTGCGGCTTCAACCTTTCCC-TCTATATCTT-TAA
1 GGTATAAGATTCGTCGTTGCGGCTTCAACCTTTCCCTTC-ACA-CTTCTAA
* * * * *
20305692 GGTGTTAGATTTG-CAGTTGCGACTTCAATCTTTCCCTTCA
1 GGTATAAGATTCGTC-GTTGCGGCTTCAACCTTTCCCTTCA
20305732 AACCTGTAGA
Statistics
Matches: 371, Mismatches: 89, Indels: 38
0.74 0.18 0.08
Matches are distributed among these distances:
46 6 0.02
47 32 0.09
48 5 0.01
49 315 0.85
50 11 0.03
51 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (49 bp):
GGTATAAGATTCGTCGTTGCGGCTTCAACCTTTCCCTTCACACTTCTAA
Found at i:20305320 original size:98 final size:98
Alignment explanation
Indices: 20305204--20305727 Score: 514
Period size: 98 Copynumber: 5.4 Consensus size: 98
20305194 TCATCTTCAG
* * *
20305204 GGTATAAGATTCACCGTTGCGGAC-TCAATCTTTCCCTTTACACT-TCTAAGGTATAAGGTTCGT
1 GGTATAAGATTCATCGTTGCGG-CTTCAATCTTTCCCATTACACTCTCTAAGGTATAAGGTTCGC
* ** * *
20305267 CGTTACAGCTTCAACCTTAACCTCCACATCTTTAG
65 CGTTGC-GCTTCAACCTTTCCCTCCATATCTTTAT
* * * *
20305302 GGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCCATCACA-TCTTTATGGTATAAGGTTCGCC
1 GGTATAAGATTCATCGTTGCGGCTTCAATCTTTCCCATTACACTCTCTAAGGTATAAGGTTCGCC
* *
20305366 GTTGCGATTTCAACCTTTCCCTCCATATCTCTAT
66 GTTGCG-CTTCAACCTTTCCCTCCATATCTTTAT
* * * * *
20305400 GGTACAAGATTCATCGTTACGGCTTCAATCTTTCCCATCACA-TCACTAAGGTATAAGGTTCGTC
1 GGTATAAGATTCATCGTTGCGGCTTCAATCTTTCCCATTACACTCTCTAAGGTATAAGGTTCGCC
*
20305464 GTTGCGACTTCAACCTTTCCCTCCATATCTTCAT
66 GTTGCG-CTTCAACCTTTCCCTCCATATCTTTAT
* * * * * * *
20305498 GGTATAAGGTTCATCGCTGTGGCTTTAATCTTTCCGA-T-CA-TATCTAAGGTATAAGGTTCGCT
1 GGTATAAGATTCATCGTTGCGGCTTCAATCTTTCCCATTACACTCTCTAAGGTATAAGGTTCGCC
*
20305560 GTTGCGGCTTCAACCTTTCCCT-CAGTATCTCTAT
66 GTTGC-GCTTCAACCTTTCCCTCCA-TATCTTTAT
* ** * * **
20305594 GGTACAAGATTCGCCGTTGCAGCTTCAATCTTTCCCA-T-CACGTCTCTAAGGTACAAGGTTTAC
1 GGTATAAGATTCATCGTTGCGGCTTCAATCTTTCCCATTACAC-TCTCTAAGGTATAAGGTTCGC
* *
20305657 CGTTGCGGCTTCAACCTTTCCCTCTATATCTTTAA
65 CGTTGC-GCTTCAACCTTTCCCTCCATATCTTTAT
* * *
20305692 GGTGTTAGATT--TGCAGTTGCGACTTCAATCTTTCCC
1 GGTATAAGATTCAT-C-GTTGCGGCTTCAATCTTTCCC
20305728 TTCAAACCTG
Statistics
Matches: 355, Mismatches: 61, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
95 2 0.01
96 78 0.22
97 5 0.01
98 269 0.76
99 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.35
Consensus pattern (98 bp):
GGTATAAGATTCATCGTTGCGGCTTCAATCTTTCCCATTACACTCTCTAAGGTATAAGGTTCGCC
GTTGCGCTTCAACCTTTCCCTCCATATCTTTAT
Found at i:20305625 original size:194 final size:195
Alignment explanation
Indices: 20305204--20305688 Score: 602
Period size: 194 Copynumber: 2.5 Consensus size: 195
20305194 TCATCTTCAG
* * *
20305204 GGTATAAGATTCACCGTTGCGGAC-TCAATCTTTCCCTTTACA-CTTCTAAGGTATAAGGTTCGT
1 GGTACAAGATTCACCGTTGCGG-CTTCAATCTTTCCCATCACATC-TCTAAGGTATAAGGTTCGT
* ** * * * *
20305267 CGTTAC-AGCTTCAACCTTAACCTCCACATCTTTAGGGTATAAGATTCGTCGTTGCGGCTTCAAT
64 CGTTGCGA-CTTCAACCTTTCCCTCCATATCTTCAGGGTATAAGATTCATCGCTGCGGCTTCAAT
* *
20305331 CTTTCCCATCACATCTTTATGGTATAAGGTTCGCCGTTGCGATTTCAACCTTTCCCTCCATATCT
128 CTTTCCCATCACATC-TTAAGGTATAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCATATCT
20305396 CTAT
192 CTAT
* * *
20305400 GGTACAAGATTCATCGTTACGGCTTCAATCTTTCCCATCACATCACTAAGGTATAAGGTTCGTCG
1 GGTACAAGATTCACCGTTGCGGCTTCAATCTTTCCCATCACATCTCTAAGGTATAAGGTTCGTCG
* * * *
20305465 TTGCGACTTCAACCTTTCCCTCCATATCTTCATGGTATAAGGTTCATCGCTGTGGCTTTAATCTT
66 TTGCGACTTCAACCTTTCCCTCCATATCTTCAGGGTATAAGATTCATCGCTGCGGCTTCAATCTT
* * * *
20305530 TCCGATCATATC-TAAGGTATAAGGTTCGCTGTTGCGGCTTCAACCTTTCCCT-CAGTATCTCTA
131 TCCCATCACATCTTAAGGTATAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCA-TATCTCTA
20305593 T
195 T
* * * * ***
20305594 GGTACAAGATTCGCCGTTGCAGCTTCAATCTTTCCCATCACGTCTCTAAGGTACAAGGTTTACCG
1 GGTACAAGATTCACCGTTGCGGCTTCAATCTTTCCCATCACATCTCTAAGGTATAAGGTTCGTCG
* *
20305659 TTGCGGCTTCAACCTTTCCCTCTATATCTT
66 TTGCGACTTCAACCTTTCCCTCCATATCTT
20305689 TAAGGTGTTA
Statistics
Matches: 250, Mismatches: 35, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
193 2 0.01
194 128 0.51
195 1 0.00
196 117 0.47
197 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.35
Consensus pattern (195 bp):
GGTACAAGATTCACCGTTGCGGCTTCAATCTTTCCCATCACATCTCTAAGGTATAAGGTTCGTCG
TTGCGACTTCAACCTTTCCCTCCATATCTTCAGGGTATAAGATTCATCGCTGCGGCTTCAATCTT
TCCCATCACATCTTAAGGTATAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCATATCTCTAT
Done.