Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 61 of 135
Found at i:20487429 original size:1 final size:1
Alignment explanation
Indices: 20487423--20487515 Score: 87
Period size: 1 Copynumber: 93.0 Consensus size: 1
20487413 GACCTCTCCG
* * * * * * * *
20487423 TTTTTTTTTTGTTTTGTTTTTGTTTTTTTTCTTTTTTTTTTGTTTTGTTTTGTTTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
20487488 TTGTTTTTTTCTTTTTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
20487516 AGGTGTAATA
Statistics
Matches: 70, Mismatches: 22, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 70 1.00
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.88
Consensus pattern (1 bp):
T
Found at i:20487450 original size:20 final size:19
Alignment explanation
Indices: 20487425--20487515 Score: 105
Period size: 20 Copynumber: 4.7 Consensus size: 19
20487415 CCTCTCCGTT
20487425 TTTTTTTTGTTTTGTTTTTG
1 TTTTTTTTGTTTT-TTTTTG
*
20487445 TTTTTTTTCTTTTTTTTTTG
1 TTTTTTTT-GTTTTTTTTTG
20487465 TTTTGTTTTGTTTTTTTTTG
1 TTTT-TTTTGTTTTTTTTTG
* *
20487485 TTTTTGTT-TTTTTCTTT-
1 TTTTTTTTGTTTTTTTTTG
*
20487502 TTTTTTTTCTTTTT
1 TTTTTTTTGTTTTT
20487516 AGGTGTAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
17 7 0.11
18 13 0.21
19 3 0.05
20 32 0.51
21 8 0.13
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.88
Consensus pattern (19 bp):
TTTTTTTTGTTTTTTTTTG
Found at i:20487509 original size:46 final size:47
Alignment explanation
Indices: 20487422--20487514 Score: 145
Period size: 46 Copynumber: 2.0 Consensus size: 47
20487412 TGACCTCTCC
* *
20487422 GTTTTTTTTTTGTTTTGTTTTTGTTTTTTTTCTTTTTTTTTTGTTTT
1 GTTTTGTTTTTGTTTTGTTTTTGTTTTTTTTCTTTTTTTTTTCTTTT
20487469 GTTTTGTTTTT-TTTTGTTTTTG-TTTTTTTCTTTTTTTTTTTCTTTT
1 GTTTTGTTTTTGTTTTGTTTTTGTTTTTTTTC-TTTTTTTTTTCTTTT
20487515 TAGGTGTAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
45 8 0.19
46 25 0.58
47 10 0.23
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (47 bp):
GTTTTGTTTTTGTTTTGTTTTTGTTTTTTTTCTTTTTTTTTTCTTTT
Found at i:20498883 original size:29 final size:29
Alignment explanation
Indices: 20498851--20499299 Score: 203
Period size: 30 Copynumber: 15.2 Consensus size: 29
20498841 TTCGGTGAAA
* *
20498851 TCGGGGTCAAAAATAGAATTTTAAAAGAT
1 TCGGGGTCAAAAATGGAATTTTAGAAGAT
* * *
20498880 TCGGGAGT--AAAATGGTAATTTTCGATGAAA
1 TCGGG-GTCAAAAATGG-AATTTTAGAAG-AT
20498910 TCGGGGTCAAAAATGGAATTTTAGAAGAT
1 TCGGGGTCAAAAATGGAATTTTAGAAGAT
* * ** *
20498939 TCGGGGGT-TAAAATGGTAATTTTCGGTGAAA
1 TC-GGGGTCAAAAATGG-AATTTTAGAAG-AT
* * * *
20498970 TCAGGGTTAAAAATAGAATTTTAAAAGATT
1 TCGGGGTCAAAAATGGAATTTTAGAAGA-T
* *
20499000 TGGGGGT--AAAATGGTAATTTTCGGTGAA-AT
1 TCGGGGTCAAAAATGG-AATTTT---AGAAGAT
* * * **
20499030 T-GGGATTAAAAATGGAATTTTGGAATTT
1 TCGGGGTCAAAAATGGAATTTTAGAAGAT
* ** *
20499058 TCGGGG--ATAAAATGGTAATTTTTGGTGAAA
1 TCGGGGTCA-AAAATGG-AATTTTAGAAG-AT
* *
20499088 TCGGGGTTAAAAATGGAATTTTATAAGAT
1 TCGGGGTCAAAAATGGAATTTTAGAAGAT
* ** *
20499117 TCGGGGGT--AAAATGGTAATTTTTGGTGAAA
1 TC-GGGGTCAAAAATGG-AATTTTAGAAG-AT
* *
20499147 TCGGGGTCAAAAATGGAATTTTGGAAGTT
1 TCGGGGTCAAAAATGGAATTTTAGAAGAT
20499176 TCGGGGGT--AAAATGGTAATTTTCAGTGAA-A-
1 TC-GGGGTCAAAAATGG-AATTTT-A--GAAGAT
* *
20499206 TCGAGGTTAAAAATGGAATTTTAGAAGAT
1 TCGGGGTCAAAAATGGAATTTTAGAAGAT
* ** *
20499235 TCGGGGGT--AAAATGGTAATTTTCGGTGAAA
1 TC-GGGGTCAAAAATGG-AATTTTAGAAG-AT
20499265 TCGGGGTCAAAAATGGAATTTTAGAAGAT
1 TCGGGGTCAAAAATGGAATTTTAGAAGAT
20499294 TCGGGG
1 TCGGGG
20499300 GTTAAAATAT
Statistics
Matches: 315, Mismatches: 63, Indels: 84
0.68 0.14 0.18
Matches are distributed among these distances:
27 7 0.02
28 43 0.14
29 96 0.30
30 111 0.35
31 52 0.17
32 6 0.02
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.31
Consensus pattern (29 bp):
TCGGGGTCAAAAATGGAATTTTAGAAGAT
Found at i:20499313 original size:29 final size:29
Alignment explanation
Indices: 20499222--20499344 Score: 90
Period size: 30 Copynumber: 4.2 Consensus size: 29
20499212 TTAAAAATGG
*
20499222 AATTTTAGAAGATTCGGGGG-TAAAATGGT
1 AATTTTAGAAGATTCGGGGGTTAAAAT-AT
* ** * *
20499251 AATTTTCGGTGAAATC-GGGGTCAAAA-AT
1 AATTTTAGAAG-ATTCGGGGGTTAAAATAT
20499279 GGAATTTTAGAAGATTCGGGGGTTAAAATAT
1 --AATTTTAGAAGATTCGGGGGTTAAAATAT
* * **
20499310 AATTTTGGAAAAGTTTTGGGGTTAAAATAT
1 AATTTTAGAAGA-TTCGGGGGTTAAAATAT
20499340 AATTT
1 AATTT
20499345 CTGGATTGTT
Statistics
Matches: 72, Mismatches: 15, Indels: 13
0.72 0.15 0.13
Matches are distributed among these distances:
28 1 0.01
29 25 0.35
30 44 0.61
31 2 0.03
ACGTcount: A:0.36, C:0.04, G:0.26, T:0.34
Consensus pattern (29 bp):
AATTTTAGAAGATTCGGGGGTTAAAATAT
Found at i:20499337 original size:59 final size:59
Alignment explanation
Indices: 20498709--20499315 Score: 846
Period size: 59 Copynumber: 10.3 Consensus size: 59
20498699 TGGATACCCG
* * * * * *
20498709 GGGGGCAAAATGGTAATTTT-GGTGTAATCGGGGTTGAAGATGGAATCTTAAAAGATTC
1 GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTC
* * *
20498767 GGGGGTAAAATGGTAA-TTT-GGTGAAATCAGGGTTAAAAACGGAA-TTTAGAAGCTTC
1 GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTC
* * *
20498823 GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTCAAAAATAGAATTTTAAAAGATTC
1 GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTC
* * *
20498882 GGGAGTAAAATGGTAATTTTCGATGAAATCGGGGTCAAAAATGGAATTTTAGAAGATTC
1 GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTC
* * * *
20498941 GGGGGTTAAAATGGTAATTTTCGGTGAAATCAGGGTTAAAAATAGAATTTTAAAAGATTT
1 GGGGG-TAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTC
* * * **
20499001 GGGGGTAAAATGGTAATTTTCGGTGAAATTGGGATTAAAAATGGAATTTTGGAATTTTC
1 GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTC
* * *
20499060 GGGGATAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTATAAGATTC
1 GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTC
* * * *
20499119 GGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTCAAAAATGGAATTTTGGAAGTTTC
1 GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTC
* *
20499178 GGGGGTAAAATGGTAATTTTCAGTGAAATCGAGGTTAAAAATGGAATTTTAGAAGATTC
1 GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTC
*
20499237 GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTCAAAAATGGAATTTTAGAAGATTC
1 GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTC
*
20499296 GGGGGTTAAAAT-ATAATTTT
1 GGGGG-TAAAATGGTAATTTT
20499316 GGAAAAGTTT
Statistics
Matches: 486, Mismatches: 58, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
56 25 0.05
57 26 0.05
58 36 0.07
59 340 0.70
60 59 0.12
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (59 bp):
GGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATTC
Found at i:20499731 original size:161 final size:163
Alignment explanation
Indices: 20499438--20499755 Score: 554
Period size: 161 Copynumber: 2.0 Consensus size: 163
20499428 ACCCATTTGA
20499438 AAACCTTGAAAAATTTTAGGGCCAATTTCGTAATTAAATAATAGTTGATTTAAGGATTAAATTAA
1 AAACCTTGAAAAATTTTAGGGCCAATTTCGTAATTAAATAATAGTTGATTTAAGGATTAAATTAA
*
20499503 AACAAATTAGAAATAAAAAGGACTAAATACAGAAATAATCCAAAAACATGACACGTGGCAACCTC
66 AACAAATTAAAAATAAAAAGGACTAAATACAGAAATAATCCAAAAACATGACACGTGGCAACCTC
*
20499568 TGGTGCAGTCAAACAGTCAAAGGACTAGTTTAT
131 TGGTGCAATCAAACAGTCAAAGGACTAGTTTAT
*
20499601 AAACCTTGAAAAATTATT-GGGCCAATTTCGTAATTAAA-ACTAAGTTGATTT-AGGATTAAATT
1 AAACCTTGAAAAATT-TTAGGGCCAATTTCGTAATTAAATAAT-AGTTGATTTAAGGATTAAATT
*
20499663 AAAACAAATTAAAAAT-AAAAGGACTAAATACAGAAATAATCCAAAAAGATGACACGTGGCAACC
64 AAAACAAATTAAAAATAAAAAGGACTAAATACAGAAATAATCCAAAAACATGACACGTGGCAACC
20499727 TCTGGTGCAATCAAACAGTCAAAGGACTA
129 TCTGGTGCAATCAAACAGTCAAAGGACTA
20499756 AAGTATAAAC
Statistics
Matches: 149, Mismatches: 4, Indels: 6
0.94 0.03 0.04
Matches are distributed among these distances:
161 75 0.50
162 28 0.19
163 44 0.30
164 2 0.01
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.25
Consensus pattern (163 bp):
AAACCTTGAAAAATTTTAGGGCCAATTTCGTAATTAAATAATAGTTGATTTAAGGATTAAATTAA
AACAAATTAAAAATAAAAAGGACTAAATACAGAAATAATCCAAAAACATGACACGTGGCAACCTC
TGGTGCAATCAAACAGTCAAAGGACTAGTTTAT
Found at i:20500547 original size:10 final size:10
Alignment explanation
Indices: 20500532--20500566 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
20500522 TTAAAAGATT
20500532 TATTAATTAA
1 TATTAATTAA
20500542 TATTAATTAA
1 TATTAATTAA
*
20500552 TATTAATTAT
1 TATTAATTAA
20500562 TATTA
1 TATTA
20500567 TTATCATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
TATTAATTAA
Found at i:20501043 original size:20 final size:20
Alignment explanation
Indices: 20501018--20501056 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
20501008 AGCTGGTGGG
* *
20501018 TGGAGCTGGTGGTCAGCAGA
1 TGGAGCGGGTGGCCAGCAGA
20501038 TGGAGCGGGTGGCCAGCAG
1 TGGAGCGGGTGGCCAGCAG
20501057 CAGTAGGCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.49, T:0.15
Consensus pattern (20 bp):
TGGAGCGGGTGGCCAGCAGA
Found at i:20501137 original size:14 final size:14
Alignment explanation
Indices: 20501099--20501151 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
20501089 ATTTGGACTA
*
20501099 TTGTGATTGGGCCC
1 TTGTAATTGGGCCC
20501113 -T-TAATTGGGCCC
1 TTGTAATTGGGCCC
* *
20501125 TTGTAAATGGGCCA
1 TTGTAATTGGGCCC
20501139 TTGTAATTGGGCC
1 TTGTAATTGGGCC
20501152 GTGGGCCATG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 10 0.30
13 2 0.06
14 21 0.64
ACGTcount: A:0.17, C:0.19, G:0.30, T:0.34
Consensus pattern (14 bp):
TTGTAATTGGGCCC
Found at i:20501208 original size:6 final size:6
Alignment explanation
Indices: 20501174--20501285 Score: 90
Period size: 6 Copynumber: 18.8 Consensus size: 6
20501164 CATTTGGACT
* ** *
20501174 TTTAAA TTTAATA TTTTAAT TTTTTA TTTAAA TTTAAA TTCAAA -TTAAA
1 TTTAAA TTTAA-A -TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
20501223 TTTAGATA TTTAAA TTTAAA -ATAAA TCTAAA TTTAAA TTTAAA --TAAA
1 TTTA-A-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
20501270 TTTAAA ATT-AA TTTAA
1 TTTAAA TTTAAA TTTAA
20501286 CTCAAAAGTC
Statistics
Matches: 84, Mismatches: 13, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
4 4 0.05
5 12 0.14
6 55 0.65
7 3 0.04
8 10 0.12
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:20501223 original size:17 final size:16
Alignment explanation
Indices: 20501201--20501285 Score: 77
Period size: 17 Copynumber: 5.2 Consensus size: 16
20501191 AATTTTTTAT
20501201 TTAAATTTAAATTCAAA
1 TTAAATTTAAATT-AAA
* *
20501218 TTAAATTTAGA-T-AT
1 TTAAATTTAAATTAAA
*
20501232 TTAAATTTAAAATAAA
1 TTAAATTTAAATTAAA
20501248 TCTAAATTTAAATTTAAA
1 T-TAAATTTAAA-TTAAA
*
20501266 -TAAATTTAAAATTAAT
1 TTAAATTT-AAATTAAA
20501282 TTAA
1 TTAA
20501286 CTCAAAAGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
14 11 0.20
15 1 0.02
16 14 0.25
17 26 0.46
18 4 0.07
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (16 bp):
TTAAATTTAAATTAAA
Found at i:20501233 original size:25 final size:22
Alignment explanation
Indices: 20501199--20501285 Score: 104
Period size: 25 Copynumber: 3.8 Consensus size: 22
20501189 TTAATTTTTT
*
20501199 ATTTAAATTTAAATTCAAATTAA
1 ATTTAAATTTAAATTTAAA-TAA
20501222 ATTTAGATATTTAAATTTAAAATAA
1 ATTTA-A-ATTTAAATTT-AAATAA
*
20501247 ATCTAAATTTAAATTTAAATAA
1 ATTTAAATTTAAATTTAAATAA
*
20501269 ATTTAAAATT-AATTTAA
1 ATTTAAATTTAAATTTAA
20501286 CTCAAAAGTC
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
21 7 0.12
22 14 0.25
23 15 0.26
24 2 0.04
25 16 0.28
26 3 0.05
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (22 bp):
ATTTAAATTTAAATTTAAATAA
Found at i:20501236 original size:31 final size:30
Alignment explanation
Indices: 20501198--20501266 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 30
20501188 TTTAATTTTT
*
20501198 TATTTAAATTTAAATTCAAAT-TAAATTTAGA
1 TATTTAAATTTAAAAT-AAATCTAAATTTA-A
20501229 TATTTAAATTTAAAATAAATCTAAATTTAA
1 TATTTAAATTTAAAATAAATCTAAATTTAA
20501259 -ATTTAAAT
1 TATTTAAAT
20501267 AAATTTAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
29 8 0.22
30 5 0.14
31 23 0.64
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (30 bp):
TATTTAAATTTAAAATAAATCTAAATTTAA
Found at i:20507862 original size:127 final size:126
Alignment explanation
Indices: 20507632--20507881 Score: 295
Period size: 127 Copynumber: 2.0 Consensus size: 126
20507622 ATTTCACCTA
* * * * *
20507632 AAAAAATAAGAGGTTGAGATGAAAACCCATAAAGGGTGTCTCGAAACCTAAGGAGTTTTGAGTCA
1 AAAAAAGAAGAGGTTGAGACGAAAACCCATAAAGGGCGTCTCAAAACCTAAAGAGTTTTGAGTCA
** ** * * *
20507697 AAAACTTGAAAGGACAGCTCAAATTTGGACCAAGGAATGAGCATGTGATGGTCGTTTCCTT
66 AAAACCCGAAAGGACAGCTCAAATTTAAACAAAAGAATGAGCATGTAATGGTCGTTTCCTT
* * *
20507758 AAAAAAGAGAGAGGTTGATACGAAAACCCGTAAAGGGCGTCTCAAAACCTAAAGATTTTTGAGTC
1 AAAAAAGA-AGAGGTTGAGACGAAAACCCATAAAGGGCGTCTCAAAACCTAAAGAGTTTTGAGTC
* * * * *
20507823 AAAAACCCGAACGGA-TGACTCAAATTTAAATAAAAGAATGGGCATGTAATGGTCTTTTC
65 AAAAACCCGAAAGGACAG-CTCAAATTTAAACAAAAGAATGAGCATGTAATGGTCGTTTC
20507882 TCTCAAAAGT
Statistics
Matches: 102, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
126 8 0.08
127 94 0.92
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (126 bp):
AAAAAAGAAGAGGTTGAGACGAAAACCCATAAAGGGCGTCTCAAAACCTAAAGAGTTTTGAGTCA
AAAACCCGAAAGGACAGCTCAAATTTAAACAAAAGAATGAGCATGTAATGGTCGTTTCCTT
Found at i:20508942 original size:50 final size:50
Alignment explanation
Indices: 20508593--20508942 Score: 249
Period size: 50 Copynumber: 7.0 Consensus size: 50
20508583 GGATCAGTGA
* * * * * * *
20508593 AACATCAAATCCTATATCCTTGAAGATGCAATGAATCGGATTGAAACCAC
1 AACATCAAATCCTATATCCCTGAAGATGTAGTGGATCAGATTGAAGCTAC
** * * * * * *
20508643 AGTAGCAAATCTTATCTCCTTGAAGATGTAGTGGAGCAAGA-TGAAGCTGC
1 AACATCAAATCCTATATCCCTGAAGATGTAGTGGATC-AGATTGAAGCTAC
* * * *
20508693 AACATCAAAT-TTGTATCCCTGAAGTTGTAGTGGATCGGATTGAAGCTAC
1 AACATCAAATCCTATATCCCTGAAGATGTAGTGGATCAGATTGAAGCTAC
* * * * ** * *
20508742 AAAAGCAAATCATATCTTTCTGTAGATGTAGTGGAGCAAGA-TGAAGCTAC
1 AACATCAAATCCTATATCCCTGAAGATGTAGTGGATC-AGATTGAAGCTAC
* * * *
20508792 AACATCAAATCCTATATCCCTAAAGTTGCAGTGGATCAGATTGAAACTAC
1 AACATCAAATCCTATATCCCTGAAGATGTAGTGGATCAGATTGAAGCTAC
** * * * * *
20508842 ATTAGCAAGTCCTATCTCCCTGAAGATGCAGTGGAGCAAGA-TGAAGCTAC
1 AACATCAAATCCTATATCCCTGAAGATGTAGTGGATC-AGATTGAAGCTAC
* * * * * *
20508892 AACATCAAATCCTATTTCCCTAAAGTTGTAATGGATCGGATTGAAACTAC
1 AACATCAAATCCTATATCCCTGAAGATGTAGTGGATCAGATTGAAGCTAC
20508942 A
1 A
20508943 TTAGGAAGTC
Statistics
Matches: 226, Mismatches: 67, Indels: 14
0.74 0.22 0.05
Matches are distributed among these distances:
48 2 0.01
49 42 0.19
50 175 0.77
51 7 0.03
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (50 bp):
AACATCAAATCCTATATCCCTGAAGATGTAGTGGATCAGATTGAAGCTAC
Found at i:20508955 original size:50 final size:50
Alignment explanation
Indices: 20508801--20508974 Score: 197
Period size: 50 Copynumber: 3.5 Consensus size: 50
20508791 CAACATCAAA
*
20508801 TCCTATATCCCTAAAGTTGCAGTGGATCAGATTGAAACTACATTAGCAAG
1 TCCTATCTCCCTAAAGTTGCAGTGGATCAGATTGAAACTACATTAGCAAG
* * * * ** * *
20508851 TCCTATCTCCCTGAAGATGCAGTGGAGCAAGA-TGAAGCTACAACATCAAA
1 TCCTATCTCCCTAAAGTTGCAGTGGATC-AGATTGAAACTACATTAGCAAG
* * * * *
20508901 TCCTATTTCCCTAAAGTTGTAATGGATCGGATTGAAACTACATTAGGAAG
1 TCCTATCTCCCTAAAGTTGCAGTGGATCAGATTGAAACTACATTAGCAAG
*
20508951 TCCTATCTCCCTAAAGGTGCAGTG
1 TCCTATCTCCCTAAAGTTGCAGTG
20508975 AAGCAAGATA
Statistics
Matches: 96, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
49 2 0.02
50 91 0.95
51 3 0.03
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (50 bp):
TCCTATCTCCCTAAAGTTGCAGTGGATCAGATTGAAACTACATTAGCAAG
Found at i:20509001 original size:100 final size:100
Alignment explanation
Indices: 20508593--20508993 Score: 480
Period size: 100 Copynumber: 4.0 Consensus size: 100
20508583 GGATCAGTGA
* * * * * * * * * *
20508593 AACATCAAATCCTATATCCTTGAAGATGCAATGAATCGGATTGAAACCACAGTAGCAAATCTTAT
1 AACATCAAATCCTATATCCCTAAAGTTGTAGTGGATCGGATTGAAACTACATTAGCAAGTCCTAT
* * *
20508658 CTCCTTGAAGATGTAGTGGAGCAAGATGAAGCTGC
66 CTCCCTGAAGATGCAGTGGAGCAAGATGAAGCTAC
* * * * ** * *
20508693 AACATCAAAT-TTGTATCCCTGAAGTTGTAGTGGATCGGATTGAAGCTACAAAAGCAAATCATAT
1 AACATCAAATCCTATATCCCTAAAGTTGTAGTGGATCGGATTGAAACTACATTAGCAAGTCCTAT
** * *
20508757 CTTTCTGTAGATGTAGTGGAGCAAGATGAAGCTAC
66 CTCCCTGAAGATGCAGTGGAGCAAGATGAAGCTAC
* *
20508792 AACATCAAATCCTATATCCCTAAAGTTGCAGTGGATCAGATTGAAACTACATTAGCAAGTCCTAT
1 AACATCAAATCCTATATCCCTAAAGTTGTAGTGGATCGGATTGAAACTACATTAGCAAGTCCTAT
20508857 CTCCCTGAAGATGCAGTGGAGCAAGATGAAGCTAC
66 CTCCCTGAAGATGCAGTGGAGCAAGATGAAGCTAC
* * *
20508892 AACATCAAATCCTATTTCCCTAAAGTTGTAATGGATCGGATTGAAACTACATTAGGAAGTCCTAT
1 AACATCAAATCCTATATCCCTAAAGTTGTAGTGGATCGGATTGAAACTACATTAGCAAGTCCTAT
* * * * *
20508957 CTCCCTAAAGGTGCAGTGAAGCAAGATAAAGTTAC
66 CTCCCTGAAGATGCAGTGGAGCAAGATGAAGCTAC
20508992 AA
1 AA
20508994 TGTCAAATAT
Statistics
Matches: 259, Mismatches: 41, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
99 82 0.32
100 177 0.68
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (100 bp):
AACATCAAATCCTATATCCCTAAAGTTGTAGTGGATCGGATTGAAACTACATTAGCAAGTCCTAT
CTCCCTGAAGATGCAGTGGAGCAAGATGAAGCTAC
Found at i:20516981 original size:26 final size:26
Alignment explanation
Indices: 20516945--20517000 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
20516935 GTTTACTGGT
20516945 TAAACTCTGTCT-AGGCTCGTAAGAGC
1 TAAACTCTGTCTGA-GCTCGTAAGAGC
*
20516971 TAAACTCTGTCTGAGCTCGTATGAGC
1 TAAACTCTGTCTGAGCTCGTAAGAGC
20516997 TAAA
1 TAAA
20517001 AATTCTGGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAACTCTGTCTGAGCTCGTAAGAGC
Found at i:20518228 original size:29 final size:29
Alignment explanation
Indices: 20518195--20518334 Score: 153
Period size: 28 Copynumber: 4.9 Consensus size: 29
20518185 CCCTAAATTG
* *
20518195 TCCAAAAATCATATTTTTACCCTCGAACT
1 TCCAAAAATCACATTTTTACCCTCAAACT
* * *
20518224 TCCAAAAATTAAATTTTTA-CCTCGAACT
1 TCCAAAAATCACATTTTTACCCTCAAACT
* *
20518252 TCTCAAAAATTACA-TTTTACCCTTAAACT
1 TC-CAAAAATCACATTTTTACCCTCAAACT
*
20518281 TCCAAAAATCACATTTTT-GCCTCAAACT
1 TCCAAAAATCACATTTTTACCCTCAAACT
* *
20518309 TCCCAAAATCATATTTTTACCC-CAAA
1 TCCAAAAATCACATTTTTACCCTCAAA
20518335 TTTTCCTAAA
Statistics
Matches: 96, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
28 54 0.56
29 42 0.44
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.34
Consensus pattern (29 bp):
TCCAAAAATCACATTTTTACCCTCAAACT
Found at i:20518340 original size:29 final size:28
Alignment explanation
Indices: 20518195--20518395 Score: 152
Period size: 29 Copynumber: 7.0 Consensus size: 28
20518185 CCCTAAATTG
*
20518195 TCCAAAAATCATATTTTTACCCTCGAACT
1 TCCAAAAATCATATTTTTACCC-CAAACT
* * * *
20518224 TCCAAAAATTAAATTTTTACCTCGAACT
1 TCCAAAAATCATATTTTTACCCCAAACT
* * *
20518252 TCTCAAAAATTACA-TTTTACCCTTAAACT
1 TC-CAAAAATCATATTTTTACCC-CAAACT
* * *
20518281 TCCAAAAATCACATTTTTGCCTCAAACT
1 TCCAAAAATCATATTTTTACCCCAAACT
* *
20518309 TCCCAAAATCATATTTTTACCCCAAATTT
1 TCCAAAAATCATATTTTTACCCCAAA-CT
* * *
20518338 TCCTAAAATGATATTTCTACCCCTAAAACT
1 TCCAAAAATCATATTTTTACCCC--AAACT
* * * * *
20518368 TTCTAAAATTATGTTTTAACCCCAAACT
1 TCCAAAAATCATATTTTTACCCCAAACT
20518396 CTCTAAAACT
Statistics
Matches: 141, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
28 57 0.40
29 62 0.44
30 19 0.13
31 3 0.02
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.36
Consensus pattern (28 bp):
TCCAAAAATCATATTTTTACCCCAAACT
Found at i:20518346 original size:57 final size:58
Alignment explanation
Indices: 20518197--20518334 Score: 174
Period size: 57 Copynumber: 2.4 Consensus size: 58
20518187 CTAAATTGTC
* * *
20518197 CAAAAATCATATTTTTACCCTCGAACTTCCAAAAATTAAATTTTTACCTCGAACTTCT
1 CAAAAATCATATTTTTACCCTCAAACTTCCAAAAATCAAATTTTTACCTCAAACTTCT
* * * * *
20518255 CAAAAATTACA-TTTTACCCTTAAACTTCCAAAAATCACATTTTTGCCTCAAACTTC-
1 CAAAAATCATATTTTTACCCTCAAACTTCCAAAAATCAAATTTTTACCTCAAACTTCT
*
20518311 CCAAAATCATATTTTTACCC-CAAA
1 CAAAAATCATATTTTTACCCTCAAA
20518335 TTTTCCTAAA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
56 11 0.16
57 47 0.70
58 9 0.13
ACGTcount: A:0.38, C:0.26, G:0.02, T:0.34
Consensus pattern (58 bp):
CAAAAATCATATTTTTACCCTCAAACTTCCAAAAATCAAATTTTTACCTCAAACTTCT
Found at i:20518376 original size:30 final size:28
Alignment explanation
Indices: 20518199--20518403 Score: 90
Period size: 28 Copynumber: 7.1 Consensus size: 28
20518189 AAATTGTCCA
* * * *
20518199 AAAATCATATTTTTACCCTCGAACTTCCA
1 AAAATCATATTTCTACCC-CAAACTTTCT
* * * * * *
20518228 AAAATTAAATTTTTACCTCGAACTTCTCA
1 AAAATCATATTTCTACCCCAAACTT-TCT
* * * * *
20518257 AAAATTACATTT-TACCCTTAAACTTCCA
1 AAAATCATATTTCTACCC-CAAACTTTCT
* * * * * *
20518285 AAAATCACATTTTTGCCTCAAACTTCCC
1 AAAATCATATTTCTACCCCAAACTTTCT
* *
20518313 AAAATCATATTTTTACCCCAAATTTTCCT
1 AAAATCATATTTCTACCCCAAACTTT-CT
*
20518342 AAAATGATATTTCTACCCCTAAAACTTTCT
1 AAAATCATATTTCTACCCC--AAACTTTCT
* * *
20518372 AAAATTATGTTT-TAACCCCAAACTCTCT
1 AAAATCATATTTCT-ACCCCAAACTTTCT
20518400 AAAA
1 AAAA
20518404 CTTCATTTTT
Statistics
Matches: 143, Mismatches: 26, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
28 65 0.45
29 55 0.38
30 17 0.12
31 6 0.04
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.36
Consensus pattern (28 bp):
AAAATCATATTTCTACCCCAAACTTTCT
Found at i:20518793 original size:97 final size:97
Alignment explanation
Indices: 20518665--20518858 Score: 300
Period size: 97 Copynumber: 2.0 Consensus size: 97
20518655 AAAATATTTA
* * *
20518665 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAATTTATGCCTTAACTTACTAGGTGCGAT
1 AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAATTTATGCCTTAACTTACTAGGCGCGAC
20518730 TTTTCTTCAAATCGGGATAATCGAATACCCTT
66 TTTTCTTCAAATCGGGATAATCGAATACCCTT
* * * * *
20518762 AAATCGAGACAATGTTTCTTTATCTT-TGGTTTTGAAAATTTGTGTCTTAACTTACTAGGCGCGA
1 AAATCGAGACAATATTCCTTTAT-TTCGGGTTTTGAAAATTTATGCCTTAACTTACTAGGCGCGA
20518826 CTTTTCTTCAAATCGGGATAATCGAATACCCTT
65 CTTTTCTTCAAATCGGGATAATCGAATACCCTT
20518859 TTGCAAGGTT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
97 86 0.98
98 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (97 bp):
AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAATTTATGCCTTAACTTACTAGGCGCGAC
TTTTCTTCAAATCGGGATAATCGAATACCCTT
Found at i:20527267 original size:176 final size:176
Alignment explanation
Indices: 20526973--20527326 Score: 708
Period size: 176 Copynumber: 2.0 Consensus size: 176
20526963 TTGTAGTCAA
20526973 CAAAAAAGGGATTGAAATAGATCCAGATAAAGTTAAAGCCATACAGAGGCTACCACCACCTTGTA
1 CAAAAAAGGGATTGAAATAGATCCAGATAAAGTTAAAGCCATACAGAGGCTACCACCACCTTGTA
20527038 CGCAAAAAGAAGTTCGAGGGTTTTTAAGGAGACTAAATTACATTGCTCGGTTCATTTCACAATTG
66 CGCAAAAAGAAGTTCGAGGGTTTTTAAGGAGACTAAATTACATTGCTCGGTTCATTTCACAATTG
20527103 ACTGAGAAATGTGATCCTATCTTTCGTTTGCTTAGGAAGCGCAACC
131 ACTGAGAAATGTGATCCTATCTTTCGTTTGCTTAGGAAGCGCAACC
20527149 CAAAAAAGGGATTGAAATAGATCCAGATAAAGTTAAAGCCATACAGAGGCTACCACCACCTTGTA
1 CAAAAAAGGGATTGAAATAGATCCAGATAAAGTTAAAGCCATACAGAGGCTACCACCACCTTGTA
20527214 CGCAAAAAGAAGTTCGAGGGTTTTTAAGGAGACTAAATTACATTGCTCGGTTCATTTCACAATTG
66 CGCAAAAAGAAGTTCGAGGGTTTTTAAGGAGACTAAATTACATTGCTCGGTTCATTTCACAATTG
20527279 ACTGAGAAATGTGATCCTATCTTTCGTTTGCTTAGGAAGCGCAACC
131 ACTGAGAAATGTGATCCTATCTTTCGTTTGCTTAGGAAGCGCAACC
20527325 CA
1 CA
20527327 GGTGTGTGGG
Statistics
Matches: 178, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
176 178 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (176 bp):
CAAAAAAGGGATTGAAATAGATCCAGATAAAGTTAAAGCCATACAGAGGCTACCACCACCTTGTA
CGCAAAAAGAAGTTCGAGGGTTTTTAAGGAGACTAAATTACATTGCTCGGTTCATTTCACAATTG
ACTGAGAAATGTGATCCTATCTTTCGTTTGCTTAGGAAGCGCAACC
Found at i:20530777 original size:39 final size:39
Alignment explanation
Indices: 20530732--20531141 Score: 290
Period size: 39 Copynumber: 10.5 Consensus size: 39
20530722 TCTTCAGCAA
* * *
20530732 ATCTCTTACCTCGAGCCTGGGACAAATTACAGCCATTCG
1 ATCTCTTACCCCGAGCCTGGGACAGATTACAACCATTCG
* *
20530771 ATCTCTTACCCCGAGCTTGGGACAGATTACAACCATCCG
1 ATCTCTTACCCCGAGCCTGGGACAGATTACAACCATTCG
* *
20530810 ATCTCTTACCCCGAGCCTGGGATAGATTACAGCCATTCG
1 ATCTCTTACCCCGAGCCTGGGACAGATTACAACCATTCG
* *
20530849 ATCTCTTACCCCGAGCCTAAGG-CAGATTACAATCATTCG
1 ATCTCTTACCCCGAGCCT-GGGACAGATTACAACCATTCG
* * * * * *
20530888 ATCTCTTATCCCGAGTCT-AGACAGA-T-C-ATCATAAGCAA
1 ATCTCTTACCCCGAGCCTGGGACAGATTACAACCAT--TC-G
* * *
20530926 ATCTCTTACCTCGAGCCTGAGG-CAAATTACAACCATCCG
1 ATCTCTTACCCCGAGCCTG-GGACAGATTACAACCATTCG
* * * * *
20530965 ATATCTTACCCCGAGCCTGGGACAGATCATC-ATCA-GCAA
1 ATCTCTTACCCCGAGCCTGGGACAGATTA-CAACCATTC-G
* * *
20531004 ATCTCTTACCCCGAGCCTTAGG-CAGATTGCAACCATCCG
1 ATCTCTTACCCCGAGCC-TGGGACAGATTACAACCATTCG
* * * * *
20531043 ATCTCTTACCCC-ACACCTGGTG-CAGATCATC-ATCA-GCAA
1 ATCTCTTACCCCGA-GCCTGG-GACAGATTA-CAACCATTC-G
* * *
20531082 ATCTCTTACCCCGAGCCTAAGG-CAGATTACAACTATCCG
1 ATCTCTTACCCCGAGCCT-GGGACAGATTACAACCATTCG
*
20531121 ATCTCTTACCCCGAGTCTGGG
1 ATCTCTTACCCCGAGCCTGGG
20531142 GTAAATCATC
Statistics
Matches: 291, Mismatches: 56, Indels: 49
0.73 0.14 0.12
Matches are distributed among these distances:
35 5 0.02
36 1 0.00
37 3 0.01
38 30 0.10
39 233 0.80
40 14 0.05
41 1 0.00
42 4 0.01
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCCTGGGACAGATTACAACCATTCG
Found at i:20530839 original size:78 final size:78
Alignment explanation
Indices: 20530732--20531226 Score: 463
Period size: 78 Copynumber: 6.4 Consensus size: 78
20530722 TCTTCAGCAA
* * * * * *
20530732 ATCTCTTACCTCGAGCCTGGGACAAATTACAGCCATTC-GATCTCTTACCCCGAG-CTTGGGACA
1 ATCTCTTACCCCGAGCCTGGGACAGATTACA-TCATGCAAATCTCTTACCCCGAGCCTTAGG-CA
20530795 GATTACAACCATCCG
64 GATTACAACCATCCG
* * * * *
20530810 ATCTCTTACCCCGAGCCTGGGATAGATTACAGCCATTC-GATCTCTTACCCCGAGCCTAAGGCAG
1 ATCTCTTACCCCGAGCCTGGGACAGATTACA-TCATGCAAATCTCTTACCCCGAGCCTTAGGCAG
* *
20530874 ATTACAATCATTCG
65 ATTACAACCATCCG
* * * * *
20530888 ATCTCTTATCCCGAGTCT-AGACAGA-T-CATCATAAGCAAATCTCTTACCTCGAGCCTGAGGCA
1 ATCTCTTACCCCGAGCCTGGGACAGATTACATCAT--GCAAATCTCTTACCCCGAGCCTTAGGCA
*
20530950 AATTACAACCATCCG
64 GATTACAACCATCCG
* *
20530965 ATATCTTACCCCGAGCCTGGGACAGATCATCATCA-GCAAATCTCTTACCCCGAGCCTTAGGCAG
1 ATCTCTTACCCCGAGCCTGGGACAGATTA-CATCATGCAAATCTCTTACCCCGAGCCTTAGGCAG
*
20531029 ATTGCAACCATCCG
65 ATTACAACCATCCG
* * *
20531043 ATCTCTTACCCC-ACACCTGGTG-CAGATCATCATCA-GCAAATCTCTTACCCCGAGCCTAAGGC
1 ATCTCTTACCCCGA-GCCTGG-GACAGATTA-CATCATGCAAATCTCTTACCCCGAGCCTTAGGC
*
20531105 AGATTACAACTATCCG
63 AGATTACAACCATCCG
* ** * * **
20531121 ATCTCTTACCCCGAGTCTGGGGTAAATCATCATCA-GCAAATCTCTTACCCCGAGCCTGGGGCAG
1 ATCTCTTACCCCGAGCCTGGGACAGATTA-CATCATGCAAATCTCTTACCCCGAGCCTTAGGCAG
* * * * *
20531185 ATCACCATCAGCCA
65 ATTACAACCATCCG
* *
20531199 ATCTCTTACCCCGATCATGGGACAGATT
1 ATCTCTTACCCCGAGCCTGGGACAGATT
20531227 GTAGTCATTC
Statistics
Matches: 353, Mismatches: 52, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
74 3 0.01
75 2 0.01
76 2 0.01
77 56 0.16
78 279 0.79
79 6 0.02
81 5 0.01
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (78 bp):
ATCTCTTACCCCGAGCCTGGGACAGATTACATCATGCAAATCTCTTACCCCGAGCCTTAGGCAGA
TTACAACCATCCG
Found at i:20531008 original size:116 final size:116
Alignment explanation
Indices: 20530810--20531180 Score: 262
Period size: 117 Copynumber: 3.2 Consensus size: 116
20530800 CAACCATCCG
* * *
20530810 ATCTCTTACCCCGAGCCTGGGATAGATTACAGCCATTCGATCTCTTACCCCGAGCCTAAGGCAGA
1 ATCTCTTACCCCGAGCCTGGGATAGATTACAACCATCCGATATCTTACCCCGAGCCTAAGGCAGA
* * * *
20530875 TTACAATCATTCGATCTCTTATCCCGAGTCTAGACAGATCATCATAAGCAA
66 TCACAATCATGCAATCTCTTACCCCGAGTCTAGACAGATCATCATAAGCAA
* *
20530926 ATCTCTTACCTCGAGCCTGAGGCA-A-ATTACAACCATCCGATATCTTACCCCGAGCCT-GGGAC
1 ATCTCTTACCCCGAGCCTG-GG-ATAGATTACAACCATCCGATATCTTACCCCGAGCCTAAGG-C
* * * **
20530988 AGATCATC-ATCA-GCAAATCTCTTACCCCGAGCCTTAGGCAGAT--TGCA-ACCATCCG
63 AGATCA-CAATCATGC-AATCTCTTACCCCGAGTC-TAGACAGATCAT-CATA--AGCAA
* * * * * ** *
20531043 ATCTCTTACCCC-ACACCTGGTG-CAGATCATC-ATCAGCAAATCTCTTACCCCGAGCCTAAGGC
1 ATCTCTTACCCCGA-GCCTGG-GATAGATTA-CAACCATCCGATATCTTACCCCGAGCCTAAGGC
* * * * ** * *
20531105 AGATTACAA-CTATCCGATCTCTTACCCCGAGTCTGGGGTAAATCATCATCAGCAA
63 AGATCACAATC-ATGCAATCTCTTACCCCGAGTCT-AGACAGATCATCATAAGCAA
20531160 ATCTCTTACCCCGAGCCTGGG
1 ATCTCTTACCCCGAGCCTGGG
20531181 GCAGATCACC
Statistics
Matches: 197, Mismatches: 35, Indels: 46
0.71 0.13 0.17
Matches are distributed among these distances:
115 5 0.03
116 81 0.41
117 102 0.52
118 8 0.04
119 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (116 bp):
ATCTCTTACCCCGAGCCTGGGATAGATTACAACCATCCGATATCTTACCCCGAGCCTAAGGCAGA
TCACAATCATGCAATCTCTTACCCCGAGTCTAGACAGATCATCATAAGCAA
Found at i:20531164 original size:39 final size:39
Alignment explanation
Indices: 20530849--20531212 Score: 251
Period size: 39 Copynumber: 9.4 Consensus size: 39
20530839 CAGCCATTCG
** * * *
20530849 ATCTCTTACCCCGAGCCTAAGGCAGATTA-CAATCATTC-G
1 ATCTCTTACCCCGAGCCTGGGGCAGATCATC-ATCA-GCAA
* * * * *
20530888 ATCTCTTATCCCGAGTCT-AGACAGATCATCATAAGCAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAA
* * * * * * **
20530926 ATCTCTTACCTCGAGCCTGAGGCAAATTA-CAACCATCCG
1 ATCTCTTACCCCGAGCCTGGGGCAGATCATC-ATCAGCAA
* *
20530965 ATATCTTACCCCGAGCCTGGGACAGATCATCATCAGCAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAA
** * *
20531004 ATCTCTTACCCCGAGCCTTAGGCAGATTGCAACCATC--C-G
1 ATCTCTTACCCCGAGCCTGGGGCAGA-T-C-ATCATCAGCAA
* *
20531043 ATCTCTTACCCC-ACACCTGGTGCAGATCATCATCAGCAA
1 ATCTCTTACCCCGA-GCCTGGGGCAGATCATCATCAGCAA
** * * * **
20531082 ATCTCTTACCCCGAGCCTAAGGCAGATTA-CAACTATCCG
1 ATCTCTTACCCCGAGCCTGGGGCAGATCATCATC-AGCAA
* * *
20531121 ATCTCTTACCCCGAGTCTGGGGTAAATCATCATCAGCAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAA
* *
20531160 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAA
20531199 ATCTCTTACCCCGA
1 ATCTCTTACCCCGA
20531213 TCATGGGACA
Statistics
Matches: 246, Mismatches: 64, Indels: 30
0.72 0.19 0.09
Matches are distributed among these distances:
36 5 0.02
37 2 0.01
38 33 0.13
39 193 0.78
40 7 0.03
41 1 0.00
42 5 0.02
ACGTcount: A:0.28, C:0.33, G:0.16, T:0.23
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAA
Found at i:20531225 original size:156 final size:156
Alignment explanation
Indices: 20530771--20531225 Score: 539
Period size: 156 Copynumber: 2.9 Consensus size: 156
20530761 CAGCCATTCG
**
20530771 ATCTCTTACCCCGAG-CTTGGGACAGATTACAACCATCCGATCTCTTACCCCGAGCCTGGGATAG
1 ATCTCTTACCCCGAGCCTAAGG-CAGATTACAACCATCCGATCTCTTACCCCGAGCCTGGGATAG
* * * * * *
20530835 ATTA-CAGCCATTC-GATCTCTTACCCCGAGCCTAAGGCAGATTACAATCATTCGATCTCTTATC
65 ATCATCA-TCA-GCAAATCTCTTACCCCGAGCCTAAGGCAGATTACAATCATCCGATCTCTTACC
*
20530898 CCGAGTC-T-AGACAGATCATCATAAGCAA
128 CCGA-TCATGGGACAGATCATCATAAGCAA
* * * * *
20530926 ATCTCTTACCTCGAGCCTGAGGCAAATTACAACCATCCGATATCTTACCCCGAGCCTGGGACAGA
1 ATCTCTTACCCCGAGCCTAAGGCAGATTACAACCATCCGATCTCTTACCCCGAGCCTGGGATAGA
* * *
20530991 TCATCATCAGCAAATCTCTTACCCCGAGCCTTAGGCAGATTGCAACCATCCGATCTCTTACCCC-
66 TCATCATCAGCAAATCTCTTACCCCGAGCCTAAGGCAGATTACAATCATCCGATCTCTTACCCCG
*
20531055 A-CACCTGGTG-CAGATCATCATCAGCAA
131 ATCA--TGG-GACAGATCATCATAAGCAA
* * * *
20531082 ATCTCTTACCCCGAGCCTAAGGCAGATTACAACTATCCGATCTCTTACCCCGAGTCTGGGGTAAA
1 ATCTCTTACCCCGAGCCTAAGGCAGATTACAACCATCCGATCTCTTACCCCGAGCCTGGGATAGA
** * * * *
20531147 TCATCATCAGCAAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCG
66 TCATCATCAGCAAATCTCTTACCCCGAGCCTAAGGCAGATTACAATCATCCGATCTCTTACCCCG
20531212 ATCATGGGACAGAT
131 ATCATGGGACAGAT
20531226 TGTAGTCATT
Statistics
Matches: 255, Mismatches: 34, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
152 1 0.00
154 2 0.01
155 106 0.42
156 142 0.56
157 2 0.01
158 2 0.01
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (156 bp):
ATCTCTTACCCCGAGCCTAAGGCAGATTACAACCATCCGATCTCTTACCCCGAGCCTGGGATAGA
TCATCATCAGCAAATCTCTTACCCCGAGCCTAAGGCAGATTACAATCATCCGATCTCTTACCCCG
ATCATGGGACAGATCATCATAAGCAA
Found at i:20531662 original size:6 final size:6
Alignment explanation
Indices: 20531651--20531718 Score: 54
Period size: 6 Copynumber: 11.8 Consensus size: 6
20531641 CCCAAATAGG
* * * *
20531651 ATTTAA ATTTAA ATTT-A TTTTAA ACTTAA ATTT-A TTTTAA GTTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
*
20531697 A-TT-C ATTTGAA ATTTAA ATTTA
1 ATTTAA ATTT-AA ATTTAA ATTTA
20531719 TTGTTAATTT
Statistics
Matches: 48, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
4 1 0.02
5 12 0.25
6 31 0.65
7 4 0.08
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (6 bp):
ATTTAA
Found at i:20531672 original size:17 final size:17
Alignment explanation
Indices: 20531652--20531731 Score: 108
Period size: 17 Copynumber: 4.7 Consensus size: 17
20531642 CCAAATAGGA
20531652 TTTAAATTTAAATTTAT
1 TTTAAATTTAAATTTAT
*
20531669 TTTAAACTTAAATTTAT
1 TTTAAATTTAAATTTAT
* *
20531686 TTTAAGTTTAAATTCAT
1 TTTAAATTTAAATTTAT
*
20531703 TTGAAATTTAAATTTAT
1 TTTAAATTTAAATTTAT
20531720 TGTT-AATTTAAA
1 T-TTAAATTTAAA
20531732 GTTAAAATTT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
17 53 0.98
18 1 0.02
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.54
Consensus pattern (17 bp):
TTTAAATTTAAATTTAT
Found at i:20533646 original size:29 final size:30
Alignment explanation
Indices: 20533594--20533650 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
20533584 CCCAGAAGGT
*
20533594 CCTTGAACTGTCTAGAAATCATATTTTTGC
1 CCTTGAACTGTCTAAAAATCATATTTTTGC
*
20533624 CCTTGAACT-TTTAAAAATCATATTTTT
1 CCTTGAACTGTCTAAAAATCATATTTTT
20533651 CCTCGAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.44
Consensus pattern (30 bp):
CCTTGAACTGTCTAAAAATCATATTTTTGC
Found at i:20533667 original size:28 final size:29
Alignment explanation
Indices: 20533609--20533696 Score: 74
Period size: 27 Copynumber: 3.1 Consensus size: 29
20533599 AACTGTCTAG
* * * *
20533609 AAATCATATTTTTGCCCTTGAACTT-TTAA
1 AAATCATATTTTT-ACCTCGAAATTCCTAA
20533638 AAATCATATTTTT-CCTCGAAATTCCT-A
1 AAATCATATTTTTACCTCGAAATTCCTAA
* * *
20533665 AAACCATGTTTTTACCTCGAATTTTCCTAA
1 AAATCATATTTTTACCTCGAA-ATTCCTAA
20533695 AA
1 AA
20533697 TGACATTTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
27 20 0.41
28 8 0.16
29 18 0.37
30 3 0.06
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (29 bp):
AAATCATATTTTTACCTCGAAATTCCTAA
Found at i:20533676 original size:27 final size:29
Alignment explanation
Indices: 20533637--20533696 Score: 79
Period size: 27 Copynumber: 2.1 Consensus size: 29
20533627 TGAACTTTTA
*
20533637 AAAATCATATTTTT-CCTCGAA-ATTCCT
1 AAAACCATATTTTTACCTCGAATATTCCT
* *
20533664 AAAACCATGTTTTTACCTCGAATTTTCCT
1 AAAACCATATTTTTACCTCGAATATTCCT
20533693 AAAA
1 AAAA
20533697 TGACATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 12 0.43
28 7 0.25
29 9 0.32
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (29 bp):
AAAACCATATTTTTACCTCGAATATTCCT
Found at i:20534182 original size:97 final size:97
Alignment explanation
Indices: 20534014--20534207 Score: 293
Period size: 97 Copynumber: 2.0 Consensus size: 97
20534004 AAAATATTTA
* * *
20534014 AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGCGTT
1 AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAAATTGTGCCTTAACTTACTAGACGCGCT
20534079 TCTTCTTCAAATCGGGATAATCGAATACCCTT
66 TCTTCTTCAAATCGGGATAATCGAATACCCTT
* * * *
20534111 AAATCGAGGCAATGTTTCTTTATCTT-TGGTTTTGAAAAATTGTGCCTTAACTTACTAGACGCGA
1 AAATCGAGACAATATTCCTTTAT-TTCGGGTTTTGAAAAATTGTGCCTTAACTTACTAGACGCG-
20534175 CTT-TTCTTCAAATCGGGATAATCGAATACCCTT
64 CTTCTTCTTCAAATCGGGATAATCGAATACCCTT
20534208 TTGCAAAGTT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
97 84 0.95
98 4 0.05
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.37
Consensus pattern (97 bp):
AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAAATTGTGCCTTAACTTACTAGACGCGCT
TCTTCTTCAAATCGGGATAATCGAATACCCTT
Found at i:20537469 original size:38 final size:37
Alignment explanation
Indices: 20537387--20537470 Score: 116
Period size: 38 Copynumber: 2.2 Consensus size: 37
20537377 ATGAGTTTAT
*
20537387 TCAGAATTACGCCCAGAATTGTCACTACATGACGATG
1 TCAGAATTACGCCCAAAATTGTCACTACATGACGATG
*
20537424 TCTAGAATTACGCCCAAAATTGTTACTACATGA-GCATG
1 TC-AGAATTACGCCCAAAATTGTCACTACATGACG-ATG
20537462 CTCAGAATT
1 -TCAGAATT
20537471 GTCGCCGTAG
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
37 3 0.07
38 37 0.88
39 2 0.05
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (37 bp):
TCAGAATTACGCCCAAAATTGTCACTACATGACGATG
Found at i:20540792 original size:52 final size:52
Alignment explanation
Indices: 20540705--20540848 Score: 184
Period size: 52 Copynumber: 2.8 Consensus size: 52
20540695 GCCATAAACG
* *
20540705 AAGAGGTTCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATT
1 AAGAGGTTCGATGACTATGTGTCATCGTGAGTATATGAATCCCTTACGGATT
* * * *
20540757 AAGAGG-TCTGATGACTTTGTGTCATTGTGAATATATGAATCCCTTGCGGATT
1 AAGAGGTTC-GATGACTATGTGTCATCGTGAGTATATGAATCCCTTACGGATT
* *
20540809 ATA-AGGTTCGGTGGCTATGTGTCATCGTGAGTATATGAAT
1 A-AGAGGTTCGATGACTATGTGTCATCGTGAGTATATGAAT
20540849 GAAGTGAAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
51 2 0.03
52 73 0.94
53 3 0.04
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.35
Consensus pattern (52 bp):
AAGAGGTTCGATGACTATGTGTCATCGTGAGTATATGAATCCCTTACGGATT
Found at i:20541825 original size:14 final size:15
Alignment explanation
Indices: 20541797--20541826 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
20541787 TGTATAATAT
20541797 AATGATAAGATGAAC
1 AATGATAAGATGAAC
20541812 AATGATAA-ATGAAC
1 AATGATAAGATGAAC
20541826 A
1 A
20541827 GTAAAACACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.20
Consensus pattern (15 bp):
AATGATAAGATGAAC
Found at i:20543284 original size:38 final size:38
Alignment explanation
Indices: 20543208--20543288 Score: 94
Period size: 38 Copynumber: 2.1 Consensus size: 38
20543198 GTCTATTTAG
* *
20543208 AATTGCACCCAGAATTGTCATTGCATGACGATGTCCAA
1 AATTGCACCCAAAATTGTCATTGCATGACGATGCCCAA
* *
20543246 AATTGCGCCCAAAATTGTCACTT-TATGA-GCATGCCCAA
1 AATTGCACCCAAAATTGTCA-TTGCATGACG-ATGCCCAA
20543284 AATTG
1 AATTG
20543289 TCGTTGCAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
37 1 0.03
38 34 0.92
39 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.27
Consensus pattern (38 bp):
AATTGCACCCAAAATTGTCATTGCATGACGATGCCCAA
Found at i:20545221 original size:17 final size:19
Alignment explanation
Indices: 20545194--20545229 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
20545184 TGTTGGTTAG
20545194 GAGGCAAAT-CCTACTGAA
1 GAGGCAAATCCCTACTGAA
20545212 GAGG-AAATCCCTACTGAA
1 GAGGCAAATCCCTACTGAA
20545230 AGGGAGGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (19 bp):
GAGGCAAATCCCTACTGAA
Found at i:20545236 original size:21 final size:18
Alignment explanation
Indices: 20545192--20545239 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 18
20545182 ATTGTTGGTT
20545192 AGGAGGCAAATCCTACTGA
1 AGGAGG-AAATCCTACTGA
20545211 A-GAGGAAATCCCTACTGAA
1 AGGAGGAAAT-CCTACTG-A
20545230 AGGGAGGAAA
1 A-GGAGGAAA
20545240 CCCAAGTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.16
18 11 0.44
19 3 0.12
21 7 0.28
ACGTcount: A:0.42, C:0.17, G:0.29, T:0.12
Consensus pattern (18 bp):
AGGAGGAAATCCTACTGA
Found at i:20545668 original size:30 final size:30
Alignment explanation
Indices: 20545632--20545694 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
20545622 GGAAAATTGA
*
20545632 GTTAGTTTTATTTCAGTTTTTAGTTGTAAT
1 GTTAGTTTTATTTCAGTTTTTAGCTGTAAT
* *
20545662 GTTAGTTTTATTTTAGTTTTTAGCTGTAGT
1 GTTAGTTTTATTTCAGTTTTTAGCTGTAAT
20545692 GTT
1 GTT
20545695 CATGCATTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.17, C:0.03, G:0.19, T:0.60
Consensus pattern (30 bp):
GTTAGTTTTATTTCAGTTTTTAGCTGTAAT
Found at i:20546820 original size:38 final size:38
Alignment explanation
Indices: 20546778--20546858 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
20546768 GTTTATTCAG
* *
20546778 AATTGCACCCAGAATTGTCACTGCATGATG-ATGTCCAA
1 AATTGCACCCAAAATTGTCACTGCATGA-GCATGCCCAA
* *
20546816 AATTGCGCCCAAAATTGTCACTGTATGAGCATGCCCAA
1 AATTGCACCCAAAATTGTCACTGCATGAGCATGCCCAA
20546854 AATTG
1 AATTG
20546859 TCGCTGCAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 1 0.03
38 37 0.97
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (38 bp):
AATTGCACCCAAAATTGTCACTGCATGAGCATGCCCAA
Found at i:20548779 original size:13 final size:13
Alignment explanation
Indices: 20548735--20548781 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
20548725 ACATTGTCAA
*
20548735 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
* *
20548748 ATTTTTCACAA-C
1 ACTTTTCAAAAGC
20548760 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
20548773 ACTTTTCAA
1 ACTTTTCAA
20548782 TCTTAATGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
12 9 0.32
13 19 0.68
ACGTcount: A:0.36, C:0.21, G:0.04, T:0.38
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:20548943 original size:23 final size:23
Alignment explanation
Indices: 20548913--20548956 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
20548903 TCATACACGT
20548913 ACATTAAACCTAAACAAGCCATC
1 ACATTAAACCTAAACAAGCCATC
20548936 ACATTAAACCTAAACAAGCCA
1 ACATTAAACCTAAACAAGCCA
20548957 GACTATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.50, C:0.30, G:0.05, T:0.16
Consensus pattern (23 bp):
ACATTAAACCTAAACAAGCCATC
Found at i:20551004 original size:13 final size:13
Alignment explanation
Indices: 20550962--20551006 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
20550952 CACTATCAAA
* *
20550962 TTTTCAAAAGTAT
1 TTTTCAAAAGCAC
*
20550975 TTTTCACAA-CAC
1 TTTTCAAAAGCAC
20550987 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
20551000 TTTTCAA
1 TTTTCAA
20551007 TCTTAATGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 9 0.33
13 18 0.67
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.40
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:20553374 original size:18 final size:18
Alignment explanation
Indices: 20553346--20553380 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
20553336 TAAGAATCAC
20553346 TTTTGAAATAAAATATATA
1 TTTTGAAATAAAA-ATATA
20553365 TTTT-AAATAAAAATAT
1 TTTTGAAATAAAAATAT
20553381 TGCTAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 8 0.50
19 4 0.25
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
TTTTGAAATAAAAATATA
Found at i:20572741 original size:21 final size:21
Alignment explanation
Indices: 20572717--20572768 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
20572707 AACGATCATC
*
20572717 GGTCAACTATCAA-TGGTCAAT
1 GGTCAACGATCAACT-GTCAAT
20572738 GGTCAACGATCAACTGTCAAT
1 GGTCAACGATCAACTGTCAAT
20572759 GGTCAACGAT
1 GGTCAACGAT
20572769 TAACAGGTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (21 bp):
GGTCAACGATCAACTGTCAAT
Found at i:20578928 original size:220 final size:220
Alignment explanation
Indices: 20578546--20578986 Score: 819
Period size: 220 Copynumber: 2.0 Consensus size: 220
20578536 CAGCTCATAA
* *
20578546 TAATCTAAGGCTTGCGAGAATTATTGCTAAGTTCCTCCTTGAAACAGAGCAAAATAATCCTTCAG
1 TAATCTAAGGCTCGCGAGAATTATTGCTAAGTTCCTCCTTGAAACAGAACAAAATAATCCTTCAG
* *
20578611 TTTATGTGCTTTTGTCAAATACTTATGCAGCTGCTGGGCAATGGGAAGAAGCAGCTAGAGTGAGG
66 TTTATGTGCTTTTATCAAATACTTATGCAGCTGCTGGGCAATGGGAAGAAACAGCTAGAGTGAGG
*
20578676 GAATCCATGAAAAATGTTGGGGTGATGAAGCAACCTGGCTCAAGTTGGATCAGTATGTAGATCCC
131 GAATCCATGAAAAATGTTGGGGTGATGAAGCAACCTGGCTCAAGTTGGATCAGTATATAGATCCC
20578741 TTCTGATGCCATCTTCCCTCTTCCC
196 TTCTGATGCCATCTTCCCTCTTCCC
20578766 TAATCTAAGGCTCGCGAGAATTATTGCTAAGTTCCTCCTTGAAACAGAACAAAATAATCCTTCAG
1 TAATCTAAGGCTCGCGAGAATTATTGCTAAGTTCCTCCTTGAAACAGAACAAAATAATCCTTCAG
20578831 TTTATGTGCTTTTATCAAATACTTATGCAGCTGCTGGGCAATGGGAAGAAACAGCTAGAGTGAGG
66 TTTATGTGCTTTTATCAAATACTTATGCAGCTGCTGGGCAATGGGAAGAAACAGCTAGAGTGAGG
20578896 GAATCCATGAAAAATGTTGGGGTGATGAAGCAACCTGGCTCAAGTTGGATCAGTATATAGATCCC
131 GAATCCATGAAAAATGTTGGGGTGATGAAGCAACCTGGCTCAAGTTGGATCAGTATATAGATCCC
* *
20578961 TTCTTATGCCATCTTCTCTCTTCCC
196 TTCTGATGCCATCTTCCCTCTTCCC
20578986 T
1 T
20578987 GTAGAGCAAA
Statistics
Matches: 214, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
220 214 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (220 bp):
TAATCTAAGGCTCGCGAGAATTATTGCTAAGTTCCTCCTTGAAACAGAACAAAATAATCCTTCAG
TTTATGTGCTTTTATCAAATACTTATGCAGCTGCTGGGCAATGGGAAGAAACAGCTAGAGTGAGG
GAATCCATGAAAAATGTTGGGGTGATGAAGCAACCTGGCTCAAGTTGGATCAGTATATAGATCCC
TTCTGATGCCATCTTCCCTCTTCCC
Found at i:20581220 original size:21 final size:22
Alignment explanation
Indices: 20581178--20581222 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
20581168 CTTTTCTAAG
20581178 TTTTTAATATATTATATTTGATT
1 TTTTTAATATATTATA-TTGATT
*
20581201 TTTTTTATATATTATA-TGATT
1 TTTTTAATATATTATATTGATT
20581222 T
1 T
20581223 ATAACACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.29
23 15 0.71
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTTTAATATATTATATTGATT
Found at i:20590802 original size:15 final size:16
Alignment explanation
Indices: 20590764--20590805 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
20590754 ACTTAAGAGA
20590764 ATATCATTTTTATTAAT
1 ATAT-ATTTTTATTAAT
20590781 ATATATTTTTGATTAAT
1 ATATATTTTT-ATTAAT
20590798 -T-TATTTTT
1 ATATATTTTT
20590806 TCTTTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.29
16 7 0.29
17 10 0.42
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (16 bp):
ATATATTTTTATTAAT
Found at i:20592206 original size:18 final size:19
Alignment explanation
Indices: 20592180--20592219 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
20592170 CAATCAGGGC
* *
20592180 ATTATGGACTTGA-ATTTG
1 ATTAGGGACTTCAGATTTG
20592198 ATTAGGGACTTCAGATTTG
1 ATTAGGGACTTCAGATTTG
20592217 ATT
1 ATT
20592220 GCCAGTGCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (19 bp):
ATTAGGGACTTCAGATTTG
Found at i:20593722 original size:103 final size:98
Alignment explanation
Indices: 20593595--20593809 Score: 287
Period size: 103 Copynumber: 2.2 Consensus size: 98
20593585 TTTTTTTGTT
*
20593595 ATTAATAT-TTACTT-TTTTTCAAATTGCTGTT-TTT-ACAGATTTGATGAAATTA-CAATAAAA
1 ATTAATTTATTACTTATTTTTCAAATTGCT-TTCTTTAACAGATTTGATGAAATTATC-AT-AAA
20593655 AAAATTAATGGGATGATGTGGAATATTTTAATTTTAATGAG
63 AAAATTAATGGGATGATGTGGAATA---T--TTTTAATGAG
*
20593696 ATTAATTTATTACTTATTTTTCAAATTGCTTTCTTTAACAGATTTGATGAAATTATCGTAAAAAA
1 ATTAATTTATTACTTATTTTTCAAATTGCTTTCTTTAACAGATTTGATGAAATTATCATAAAAAA
*
20593761 GTTAATGGGATGATGTGGAATATTTTTAATGAG
66 ATTAATGGGATGATGTGGAATATTTTTAATGAG
*
20593794 ATTAATTCATTACTTA
1 ATTAATTTATTACTTA
20593810 AATAACCCAA
Statistics
Matches: 105, Mismatches: 4, Indels: 13
0.86 0.03 0.11
Matches are distributed among these distances:
98 25 0.24
100 1 0.01
101 7 0.07
102 8 0.08
103 44 0.42
104 19 0.18
105 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.44
Consensus pattern (98 bp):
ATTAATTTATTACTTATTTTTCAAATTGCTTTCTTTAACAGATTTGATGAAATTATCATAAAAAA
ATTAATGGGATGATGTGGAATATTTTTAATGAG
Found at i:20594838 original size:18 final size:19
Alignment explanation
Indices: 20594811--20594848 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
20594801 GTTTATTTCC
20594811 TTTAAATTAAGA-ATTATT
1 TTTAAATTAAGATATTATT
* *
20594829 TTTAATTTAATATATTATT
1 TTTAAATTAAGATATTATT
20594848 T
1 T
20594849 ATTTATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTAAATTAAGATATTATT
Found at i:20603028 original size:30 final size:30
Alignment explanation
Indices: 20602958--20603029 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
20602948 AATTTTTAGT
*
20602958 AGTTTATATTTTTATAATTTTAAAAGGATTAA
1 AGTTTA-ATTTTTATAATTTT-AAAGGAGTAA
* *
20602990 A-TTAAATTTTTATAATTTT-AGGGAGGTAA
1 AGTTTAATTTTTATAATTTTAAAGGA-GTAA
20603019 AGTTTAATTTT
1 AGTTTAATTTT
20603030 ACCTTTATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
28 4 0.12
29 4 0.12
30 22 0.65
31 3 0.09
32 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (30 bp):
AGTTTAATTTTTATAATTTTAAAGGAGTAA
Found at i:20604385 original size:16 final size:16
Alignment explanation
Indices: 20604364--20604397 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
20604354 TTAAATTGAG
20604364 TTTTATATATACATTA
1 TTTTATATATACATTA
* *
20604380 TTTTATATGTGCATTA
1 TTTTATATATACATTA
20604396 TT
1 TT
20604398 GTATTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (16 bp):
TTTTATATATACATTA
Found at i:20606353 original size:289 final size:289
Alignment explanation
Indices: 20605834--20606389 Score: 959
Period size: 289 Copynumber: 1.9 Consensus size: 289
20605824 AACAAAAAGG
*
20605834 AAACTCCTCAAGAAGCTATGGCAGTTAATTCAGAATCCAATGATGCTGAAAATCATGAATCTGGT
1 AAACTCCTCAAGAAGCTATGACAGTTAATTCAGAATCCAATGATGCTGAAAATCATGAATCTGGT
* * *
20605899 TCTTTGATTTCGTCTCCTGTCTTGACTATTCCAGTATTCATATTTGAACAATACCACAAGATTTT
66 TCTTTGATTTCGTCTCCTGTCTCGACTATTCCAATATTCACATTTGAACAATACCACAAGATTTT
* * *
20605964 AAGTCTGTTGAACAAGAGTCCATCATCAGATTCTAGTGTGAATCTTGTAGGTACGATAGCTTGTA
131 AAGTCTGTTGAACAAGAGTCCATCATCAGATTCTAGTGTGAATCTTGCAGGTACGATACCTTGCA
* * *
20606029 GTTTACCTGTTGTTAAATTTTCTACTCGTTGGATTTTGGATATTGGAGCTACTGACCATATCATA
196 ATTTACCTGTTGTTAAATTTTCTACTCGTTGGATTTTGGATACTGGAGCTACTAACCATATCATA
20606094 TCTGTTTCATACTGAAGATACTGAAGCTT
261 TCTGTTTCATACTGAAGATACTGAAGCTT
* * *
20606123 AAACTCCTCAAGCAGCTATGACAGTTAATTCAGAATCCAATGATGCTGGAGATCATGAATCTGGT
1 AAACTCCTCAAGAAGCTATGACAGTTAATTCAGAATCCAATGATGCTGAAAATCATGAATCTGGT
* *
20606188 TCTTTGATTTCGTCTCCTGTCTCGACTGTTCCAATATTCACATTTGAACAATACCACCAGATTTT
66 TCTTTGATTTCGTCTCCTGTCTCGACTATTCCAATATTCACATTTGAACAATACCACAAGATTTT
*
20606253 AAGTCTGTTGAACAAGAGTCCATCATCAGATTCTAGTGTGAATCTTGCAGGTACGGTACCTTGCA
131 AAGTCTGTTGAACAAGAGTCCATCATCAGATTCTAGTGTGAATCTTGCAGGTACGATACCTTGCA
*
20606318 ATTTACCTGTTGTTAAATTTTTTACTCGTTGGATTTTGGATACTGGAGCTACTAACCATATCATA
196 ATTTACCTGTTGTTAAATTTTCTACTCGTTGGATTTTGGATACTGGAGCTACTAACCATATCATA
20606383 TCTGTTT
261 TCTGTTT
20606390 TTGAGAGCTT
Statistics
Matches: 250, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
289 250 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (289 bp):
AAACTCCTCAAGAAGCTATGACAGTTAATTCAGAATCCAATGATGCTGAAAATCATGAATCTGGT
TCTTTGATTTCGTCTCCTGTCTCGACTATTCCAATATTCACATTTGAACAATACCACAAGATTTT
AAGTCTGTTGAACAAGAGTCCATCATCAGATTCTAGTGTGAATCTTGCAGGTACGATACCTTGCA
ATTTACCTGTTGTTAAATTTTCTACTCGTTGGATTTTGGATACTGGAGCTACTAACCATATCATA
TCTGTTTCATACTGAAGATACTGAAGCTT
Found at i:20610613 original size:18 final size:18
Alignment explanation
Indices: 20610590--20610625 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
20610580 GCCTGTACCA
20610590 ACACTAGAATAAACTCAT
1 ACACTAGAATAAACTCAT
20610608 ACACTAGAATAAACTCAT
1 ACACTAGAATAAACTCAT
20610626 TGGTAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (18 bp):
ACACTAGAATAAACTCAT
Found at i:20610638 original size:4 final size:4
Alignment explanation
Indices: 20610629--20610661 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
20610619 AACTCATTGG
20610629 TAAT TAAT TAAT TAAT TAAT TAAT T--T TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAA
20610662 ACTTAATTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 2 0.07
4 25 0.93
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TAAT
Found at i:20616912 original size:16 final size:16
Alignment explanation
Indices: 20616891--20616933 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
20616881 TTATTAGGTA
20616891 TAAATTATTGAATAAT
1 TAAATTATTGAATAAT
20616907 TAAATTATTGAATAAT
1 TAAATTATTGAATAAT
20616923 TAAATTATTGA
1 TAAATTATTGA
20616934 TATCAACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (16 bp):
TAAATTATTGAATAAT
Found at i:20617530 original size:14 final size:14
Alignment explanation
Indices: 20617511--20617540 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
20617501 AATATGTGGT
20617511 AACTTGACACTAAA
1 AACTTGACACTAAA
20617525 AACTTGACACTAAA
1 AACTTGACACTAAA
20617539 AA
1 AA
20617541 GTTGTGGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.20, G:0.07, T:0.20
Consensus pattern (14 bp):
AACTTGACACTAAA
Found at i:20619322 original size:18 final size:18
Alignment explanation
Indices: 20619299--20619333 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
20619289 CACACACGCA
20619299 ATTCACAC-AGTTGTGTGG
1 ATTCACACGA-TTGTGTGG
20619317 ATTCACACGATTGTGTG
1 ATTCACACGATTGTGTG
20619334 TCCAAGGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (18 bp):
ATTCACACGATTGTGTGG
Found at i:20636486 original size:14 final size:15
Alignment explanation
Indices: 20636463--20636495 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
20636453 TTTAAACTTA
*
20636463 AATTATTTAATT-AT
1 AATTAATTAATTGAT
20636477 AATTAATTAATTGAT
1 AATTAATTAATTGAT
20636492 AATT
1 AATT
20636496 CGAAGAACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (15 bp):
AATTAATTAATTGAT
Found at i:20637502 original size:32 final size:32
Alignment explanation
Indices: 20637458--20637545 Score: 149
Period size: 32 Copynumber: 2.8 Consensus size: 32
20637448 AACTAAAGAT
*
20637458 ATGTTTAAATTATCTACTAATATACAAAATAC
1 ATGTTTAGATTATCTACTAATATACAAAATAC
* *
20637490 GTGTTTAGATTATTTACTAATATACAAAATAC
1 ATGTTTAGATTATCTACTAATATACAAAATAC
20637522 ATGTTTAGATTATCTACTAATATA
1 ATGTTTAGATTATCTACTAATATA
20637546 AATTGTCTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (32 bp):
ATGTTTAGATTATCTACTAATATACAAAATAC
Found at i:20644415 original size:26 final size:26
Alignment explanation
Indices: 20644347--20644417 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
20644337 AAATTACTAC
*
20644347 ACTGGCTCGTAAGAGCAATATACTGA
1 ACTGGCTCGTAAGAGCGATATACTGA
20644373 ACTGGCTCGTAAGAGCGATATACTGA
1 ACTGGCTCGTAAGAGCGATATACTGA
*
20644399 ATTGGCTCGTAAGAGCGAT
1 ACTGGCTCGTAAGAGCGAT
20644418 GCTCTATACA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (26 bp):
ACTGGCTCGTAAGAGCGATATACTGA
Found at i:20651033 original size:74 final size:74
Alignment explanation
Indices: 20650908--20651114 Score: 310
Period size: 74 Copynumber: 2.8 Consensus size: 74
20650898 GTTTGTAAGA
* * *
20650908 AATCGAGCTATGTGCCTAGCAGGCTTCGTGCCGGTGTAATC-GAGCTGTGTGCCTAGTAGGCTTC
1 AATCGGGCTATGTGCCTAGCAGGCTTCGTGCTGGTGTAATCAG-GCTATGTGCCTAGTAGGCTTC
20650972 GTGCCGGTGT
65 GTGCCGGTGT
* *
20650982 AATCGGGCTGTGTGCCTAGCAGGCTTCGTGCTGGTGTAATCAGGCTATGTGCCTAGTAGGCTTTG
1 AATCGGGCTATGTGCCTAGCAGGCTTCGTGCTGGTGTAATCAGGCTATGTGCCTAGTAGGCTTCG
20651047 TGCCGGTGT
66 TGCCGGTGT
* * *
20651056 AATCGGGCTATGTGCCTAGTAGACTTTGTGCTGGTG-AGATCAGGCTATGTGCCTAGTAG
1 AATCGGGCTATGTGCCTAGCAGGCTTCGTGCTGGTGTA-ATCAGGCTATGTGCCTAGTAG
20651115 ACTTTTGTGC
Statistics
Matches: 122, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
73 1 0.01
74 120 0.98
75 1 0.01
ACGTcount: A:0.16, C:0.20, G:0.34, T:0.30
Consensus pattern (74 bp):
AATCGGGCTATGTGCCTAGCAGGCTTCGTGCTGGTGTAATCAGGCTATGTGCCTAGTAGGCTTCG
TGCCGGTGT
Found at i:20651119 original size:37 final size:37
Alignment explanation
Indices: 20650914--20651114 Score: 271
Period size: 37 Copynumber: 5.4 Consensus size: 37
20650904 AAGAAATCGA
*
20650914 GCTATGTGCCTAGCAGGCTTCGTGCCGGTGTAATC-G
1 GCTATGTGCCTAGTAGGCTTCGTGCCGGTGTAATCAG
* *
20650950 AGCTGTGTGCCTAGTAGGCTTCGTGCCGGTGTAATCGG
1 -GCTATGTGCCTAGTAGGCTTCGTGCCGGTGTAATCAG
* * *
20650988 GCTGTGTGCCTAGCAGGCTTCGTGCTGGTGTAATCAG
1 GCTATGTGCCTAGTAGGCTTCGTGCCGGTGTAATCAG
* *
20651025 GCTATGTGCCTAGTAGGCTTTGTGCCGGTGTAATCGG
1 GCTATGTGCCTAGTAGGCTTCGTGCCGGTGTAATCAG
* * *
20651062 GCTATGTGCCTAGTAGACTTTGTGCTGGTG-AGATCAG
1 GCTATGTGCCTAGTAGGCTTCGTGCCGGTGTA-ATCAG
20651099 GCTATGTGCCTAGTAG
1 GCTATGTGCCTAGTAG
20651115 ACTTTTGTGC
Statistics
Matches: 149, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
36 1 0.01
37 147 0.99
38 1 0.01
ACGTcount: A:0.15, C:0.20, G:0.34, T:0.30
Consensus pattern (37 bp):
GCTATGTGCCTAGTAGGCTTCGTGCCGGTGTAATCAG
Found at i:20657262 original size:24 final size:23
Alignment explanation
Indices: 20657229--20657285 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
20657219 TTAGCTAAAG
20657229 AAAAGAAAAACAAGTAAAAAGAACA
1 AAAAG-AAAACAAGTAAAAA-AACA
* ** *
20657254 AAATGAAAATGAGTAAAAATACA
1 AAAAGAAAACAAGTAAAAAAACA
20657277 AAAAGAAAA
1 AAAAGAAAA
20657286 GAGTAAGAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 11 0.41
24 12 0.44
25 4 0.15
ACGTcount: A:0.74, C:0.05, G:0.12, T:0.09
Consensus pattern (23 bp):
AAAAGAAAACAAGTAAAAAAACA
Found at i:20657277 original size:23 final size:23
Alignment explanation
Indices: 20657241--20657291 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
20657231 AAGAAAAACA
*
20657241 AGTAAAAAGAACAAAATGAAAATG
1 AGTAAAAAGAACAAAAAGAAAA-G
*
20657265 AGTAAAAA-TACAAAAAGAAAAG
1 AGTAAAAAGAACAAAAAGAAAAG
20657287 AGTAA
1 AGTAA
20657292 GAAAAAGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 6 0.24
23 11 0.44
24 8 0.32
ACGTcount: A:0.69, C:0.04, G:0.16, T:0.12
Consensus pattern (23 bp):
AGTAAAAAGAACAAAAAGAAAAG
Found at i:20659573 original size:12 final size:11
Alignment explanation
Indices: 20659548--20659657 Score: 75
Period size: 11 Copynumber: 10.0 Consensus size: 11
20659538 TTTTTTAAAG
20659548 TTTAAATTAAT
1 TTTAAATTAAT
20659559 TTTAAATTAATT
1 TTTAAATTAA-T
*
20659571 TTTAAATTTAT
1 TTTAAATTAAT
* *
20659582 CTTAAATTTAAA
1 TTTAAA-TTAAT
*
20659594 TTT-ACTT-A-
1 TTTAAATTAAT
*
20659602 TTTAAATTTAT
1 TTTAAATTAAT
*
20659613 TTTAAATTTAAA
1 TTTAAA-TTAAT
*
20659625 TTT-AATTAAA
1 TTTAAATTAAT
*
20659635 TTTAAAATAAT
1 TTTAAATTAAT
*
20659646 ATTAAACTTAAT
1 TTTAAA-TTAAT
20659658 AAATAACAGT
Statistics
Matches: 78, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
8 3 0.04
9 4 0.05
10 11 0.14
11 35 0.45
12 25 0.32
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (11 bp):
TTTAAATTAAT
Found at i:20659580 original size:6 final size:6
Alignment explanation
Indices: 20659541--20659640 Score: 70
Period size: 6 Copynumber: 17.0 Consensus size: 6
20659531 CTTTTTATTT
* *
20659541 TTTAAA GTTTAAA -TTAAT TTTAAA -TTAATT TTTAAA TTT--A TCTTAAA
1 TTTAAA -TTTAAA TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA T-TTAAA
* *
20659588 TTTAAA TTTACTTA TTTAAA TTT-AT TTTAAA TTTAAA TTT-AA -TTAAA
1 TTTAAA TTTA--AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
20659635 TTTAAA
1 TTTAAA
20659641 ATAATATTAA
Statistics
Matches: 74, Mismatches: 8, Indels: 23
0.70 0.08 0.22
Matches are distributed among these distances:
4 4 0.05
5 18 0.24
6 35 0.47
7 12 0.16
8 5 0.07
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:20659609 original size:31 final size:30
Alignment explanation
Indices: 20659534--20659631 Score: 117
Period size: 31 Copynumber: 3.2 Consensus size: 30
20659524 GCCTGGGCTT
* ** *
20659534 TTTATTTTTTAAAGTTTAAATTAATTTTAAA
1 TTTAATTTTTAAA-TTTATCTTAAATTTAAA
20659565 -TTAATTTTTAAATTTATCTTAAATTTAAA
1 TTTAATTTTTAAATTTATCTTAAATTTAAA
* *
20659594 TTTACTTATTTAAATTTATTTTAAATTTAAA
1 TTTAATT-TTTAAATTTATCTTAAATTTAAA
20659625 TTTAATT
1 TTTAATT
20659632 AAATTTAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
29 14 0.24
30 16 0.28
31 28 0.48
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (30 bp):
TTTAATTTTTAAATTTATCTTAAATTTAAA
Found at i:20659642 original size:17 final size:16
Alignment explanation
Indices: 20659541--20659640 Score: 86
Period size: 17 Copynumber: 6.4 Consensus size: 16
20659531 CTTTTTATTT
*
20659541 TTTAAAGTTTAAATTAAT
1 TTTAAA-TTT-AATTAAA
20659559 TTTAAA-TTAATT---
1 TTTAAATTTAATTAAA
*
20659571 TTTAAATTTATCTTAAA
1 TTTAAATTTA-ATTAAA
*
20659588 TTTAAATTTACTT--A
1 TTTAAATTTAATTAAA
*
20659602 TTTAAATTTATTTTAAA
1 TTTAAATTTA-ATTAAA
20659619 TTTAAATTTAATTAAA
1 TTTAAATTTAATTAAA
20659635 TTTAAA
1 TTTAAA
20659641 ATAATATTAA
Statistics
Matches: 71, Mismatches: 3, Indels: 18
0.77 0.03 0.20
Matches are distributed among these distances:
12 6 0.08
13 3 0.04
14 13 0.18
15 6 0.08
16 16 0.23
17 21 0.30
18 6 0.08
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (16 bp):
TTTAAATTTAATTAAA
Found at i:20659642 original size:23 final size:23
Alignment explanation
Indices: 20659541--20659642 Score: 59
Period size: 23 Copynumber: 4.3 Consensus size: 23
20659531 CTTTTTATTT
*
20659541 TTTAAAGTTTAAA-TTAATTTTAAA
1 TTTAAAATTTAAATTTAA--TTAAA
** *
20659565 -TTAATTTTTAAATTTATCTTAAA
1 TTTAAAATTTAAATTTA-ATTAAA
* *
20659588 TTT-AAATTTACTTATTTAAATT-TA
1 TTTAAAATTTA--AATTT-AATTAAA
*
20659612 TTTTAAATTTAAATTTAATTAAA
1 TTTAAAATTTAAATTTAATTAAA
20659635 TTTAAAAT
1 TTTAAAAT
20659643 AATATTAAAC
Statistics
Matches: 59, Mismatches: 11, Indels: 17
0.68 0.13 0.20
Matches are distributed among these distances:
22 4 0.07
23 32 0.54
24 9 0.15
25 13 0.22
26 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (23 bp):
TTTAAAATTTAAATTTAATTAAA
Found at i:20659649 original size:17 final size:16
Alignment explanation
Indices: 20659614--20659656 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
20659604 TAAATTTATT
* *
20659614 TTAAATTTAAATTTAA
1 TTAAATTTAAAATAAA
20659630 TTAAATTTAAAATAATA
1 TTAAATTTAAAATAA-A
*
20659647 TTAAACTTAA
1 TTAAATTTAA
20659657 TAAATAACAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAATTTAAAATAAA
Found at i:20660432 original size:3 final size:3
Alignment explanation
Indices: 20660426--20660459 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
20660416 ATAATATCAG
*
20660426 TAA TAA TTA TAA TAA TAAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
20660460 ATATTTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:20660448 original size:16 final size:16
Alignment explanation
Indices: 20660427--20660475 Score: 71
Period size: 16 Copynumber: 3.0 Consensus size: 16
20660417 TAATATCAGT
20660427 AATAATTATAATAATA
1 AATAATTATAATAATA
*
20660443 AATAATAATAATAATA
1 AATAATTATAATAATA
*
20660459 AATATTTATAATTAATA
1 AATAATTATAA-TAATA
20660476 TCAATATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 24 0.83
17 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATTATAATAATA
Found at i:20660691 original size:18 final size:18
Alignment explanation
Indices: 20660668--20660702 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
20660658 TTGAAATGCT
20660668 TAGATCTAGTTCAAAAAC
1 TAGATCTAGTTCAAAAAC
*
20660686 TAGATCTAGTTTAAAAA
1 TAGATCTAGTTCAAAAA
20660703 TGAAACACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.31
Consensus pattern (18 bp):
TAGATCTAGTTCAAAAAC
Found at i:20661500 original size:30 final size:27
Alignment explanation
Indices: 20661429--20661740 Score: 145
Period size: 29 Copynumber: 10.7 Consensus size: 27
20661419 AGACTGTCTA
20661429 AAAATTACCATTTTACCCCTAAACTTT-CC
1 AAAATTACCATTTTACCCC--AA-TTTACC
* *
20661458 AATATT-CCATTTTTACCCCGATTTCACC
1 AAAATTACCA-TTTTACCCCAATTT-ACC
*
20661486 AAAATTTACCATTTTACCCCTAAAACTTT-GC
1 AAAA-TTACCATTTTACCCC---AA-TTTACC
*
20661517 AAAATT-CCATTTTTAACCCTAATTTCACC
1 AAAATTACCA-TTTT-ACCCCAATTT-ACC
20661546 AAAAATTACCATTTTACCCCTAAACTTT-CC
1 -AAAATTACCATTTTACCCC--AA-TTTACC
* * *
20661576 AAAA-TCCCATTTTTAACCTCGATTTCACC
1 AAAATTACCA-TTTT-ACCCCAATTT-ACC
20661605 AAAAATTACCATTTTACCCCCAAACTTT-CC
1 -AAAATTACCATTTTA-CCCC-AA-TTTACC
* *
20661635 AAAATT-CCATTTTGACCTCGATTTACC
1 AAAATTACCATTTT-ACCCCAATTTACC
* * *
20661662 AAAAATTACTATTTTACCCTTAAATTTTCC
1 -AAAATTACCATTTTACCC--CAATTTACC
* * *
20661692 AAAATTCCCTTTTTGACCCCGATTTCACC
1 AAAATTACCATTTT-ACCCCAATTT-ACC
*
20661721 GAAAGTTACCATTTTACCCC
1 -AAAATTACCATTTTACCCC
20661741 CTCGCAAGTC
Statistics
Matches: 217, Mismatches: 30, Indels: 72
0.68 0.09 0.23
Matches are distributed among these distances:
26 6 0.03
27 10 0.05
28 38 0.18
29 75 0.35
30 59 0.27
31 19 0.09
32 7 0.03
33 3 0.01
ACGTcount: A:0.32, C:0.29, G:0.03, T:0.36
Consensus pattern (27 bp):
AAAATTACCATTTTACCCCAATTTACC
Found at i:20661531 original size:59 final size:59
Alignment explanation
Indices: 20661428--20661740 Score: 443
Period size: 59 Copynumber: 5.3 Consensus size: 59
20661418 TAGACTGTCT
*
20661428 AAAAATTACCATTTTACCCCTAAACTTTCCAATATTCCATTTTT-ACCCCGATTTCACC
1 AAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* * **
20661486 AAAATTTACCATTTTACCCCTAAAACTTTGCAAAATTCCATTTTTAACCCTAATTTCACC
1 AAAAATTACCATTTTACCCCT-AAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* *
20661546 AAAAATTACCATTTTACCCCTAAACTTTCCAAAATCCCATTTTTAACCTCGATTTCACC
1 AAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* * *
20661605 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCA-TTTTGACCTCGATTT-ACC
1 AAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* * * * *
20661662 AAAAATTACTATTTTACCCTTAAATTTTCCAAAATTCCCTTTTTGACCCCGATTTCACC
1 AAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* *
20661721 GAAAGTTACCATTTTACCCC
1 AAAAATTACCATTTTACCCC
20661741 CTCGCAAGTC
Statistics
Matches: 227, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
57 37 0.16
58 48 0.21
59 110 0.48
60 32 0.14
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.35
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
Found at i:20661695 original size:29 final size:28
Alignment explanation
Indices: 20661429--20661697 Score: 147
Period size: 29 Copynumber: 9.2 Consensus size: 28
20661419 AGACTGTCTA
*
20661429 AAAATTACCATTTTACCCCTAAACTTTCC
1 AAAATTACCATTTTA-CCCTAAATTTTCC
* ** *
20661458 AATATT-CCATTTTTACCC-CGATTTCACC
1 AAAATTACCA-TTTTACCCTAAATTT-TCC
* *
20661486 AAAATTTACCATTTTACCCCTAAAACTTTGC
1 AAAA-TTACCATTTTA-CCCT-AAATTTTCC
*
20661517 AAAATT-CCATTTTTAACCCT-AATTTCACC
1 AAAATTACCA-TTTT-ACCCTAAATTT-TCC
*
20661546 AAAAATTACCATTTTACCCCTAAACTTTCC
1 -AAAATTACCATTTTA-CCCTAAATTTTCC
* * ** *
20661576 AAAA-TCCCATTTTTAACCTCGATTTCACC
1 AAAATTACCA-TTTTACCCTAAATTT-TCC
* *
20661605 AAAAATTACCATTTTACCCCCAAACTTTCC
1 -AAAATTACCATTTTA-CCCTAAATTTTCC
** *
20661635 AAAATT-CCATTTTGA-CCTCGATTTACC
1 AAAATTACCATTTT-ACCCTAAATTTTCC
*
20661662 AAAAATTACTATTTTACCCTTAAATTTTCC
1 -AAAATTACCATTTTACCC-TAAATTTTCC
20661692 AAAATT
1 AAAATT
20661698 CCCTTTTTGA
Statistics
Matches: 178, Mismatches: 38, Indels: 48
0.67 0.14 0.18
Matches are distributed among these distances:
27 10 0.06
28 39 0.22
29 54 0.30
30 50 0.28
31 22 0.12
32 3 0.02
ACGTcount: A:0.34, C:0.28, G:0.02, T:0.36
Consensus pattern (28 bp):
AAAATTACCATTTTACCCTAAATTTTCC
Found at i:20663918 original size:12 final size:15
Alignment explanation
Indices: 20663889--20663923 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
20663879 CTCTCATTCT
20663889 TCATATACTTTCTCA
1 TCATATACTTTCTCA
*
20663904 TCATATACTTTATCA
1 TCATATACTTTCTCA
20663919 TCATA
1 TCATA
20663924 ATTCATCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (15 bp):
TCATATACTTTCTCA
Found at i:20670175 original size:26 final size:26
Alignment explanation
Indices: 20670139--20670193 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
20670129 AAGAAATAAG
* * * *
20670139 AATGTTATAAAATTACAGTTCTATAC
1 AATGATATAAAATCACAATTCCATAC
20670165 AATGATATAAAATCACAATTCCATAC
1 AATGATATAAAATCACAATTCCATAC
20670191 AAT
1 AAT
20670194 CCTTTTTCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (26 bp):
AATGATATAAAATCACAATTCCATAC
Found at i:20672288 original size:88 final size:89
Alignment explanation
Indices: 20672194--20672420 Score: 264
Period size: 88 Copynumber: 2.6 Consensus size: 89
20672184 AAGTATCTAT
* * *
20672194 TTTTTTTTCACTCAATT-GGATATTTGAACTGTCAAAAAGCATTAAAAAGACCTTCAAAC-TTTA
1 TTTTTTTTCACTCAATTAGG-TATTTGAACTGTCAAAATGCATTAAAAAAACCCTCAAACTTTTA
*
20672257 AAAAAAAAAAGAATTAAACCACT-A
65 AAAAAAAAAACAATTAAACCACTGA
* * *
20672281 CTTTTTTTTCACTCAATTAGGTGTTTGAACTTTCAAAATGCATAAAAAAAACCCTCAAACTTTTT
1 -TTTTTTTTCACTCAATTAGGTATTTGAACTGTCAAAATGCATTAAAAAAACCCTCAAAC--TTT
** * * *
20672346 TTTAAGAAAAAACAATTAAGCCCCTGA
63 TAAAAAAAAAAACAATTAAACCACTGA
* *
20672373 TTTTTTTCCACTCAATTAGGTACTTGAACTGTC-AAATGCATTAAAAAA
1 TTTTTTTTCACTCAATTAGGTATTTGAACTGTCAAAATGCATTAAAAAA
20672421 GCTTTTTGAC
Statistics
Matches: 117, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
88 50 0.43
89 2 0.02
90 14 0.12
91 50 0.43
92 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.34
Consensus pattern (89 bp):
TTTTTTTTCACTCAATTAGGTATTTGAACTGTCAAAATGCATTAAAAAAACCCTCAAACTTTTAA
AAAAAAAAACAATTAAACCACTGA
Found at i:20672563 original size:19 final size:20
Alignment explanation
Indices: 20672539--20672615 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 20
20672529 ACTGTAAAAA
20672539 ATAAAA-TTAAATAAAAATT
1 ATAAAATTTAAATAAAAATT
* *
20672558 ATAAAATTTTAATAAAAAAT
1 ATAAAATTTAAATAAAAATT
20672578 ATAAAATTTAGAA-AAAAATTT
1 ATAAAATTTA-AATAAAAA-TT
20672599 ATAAAAATTTAAA-AAAA
1 AT-AAAATTTAAATAAAA
20672616 TAAAAAAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.12
20 25 0.50
21 11 0.22
22 8 0.16
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (20 bp):
ATAAAATTTAAATAAAAATT
Found at i:20672575 original size:21 final size:19
Alignment explanation
Indices: 20672539--20672615 Score: 86
Period size: 21 Copynumber: 3.8 Consensus size: 19
20672529 ACTGTAAAAA
20672539 ATAAAA-TTAAATAAAAATT
1 ATAAAATTTAAA-AAAAATT
20672558 ATAAAATTTTAATAAAAAA-T
1 ATAAAA-TTTAA-AAAAAATT
20672578 ATAAAATTTAGAAAAAAATTT
1 ATAAAATTTA-AAAAAAA-TT
20672599 ATAAAAATTTAAAAAAA
1 AT-AAAATTTAAAAAAA
20672616 TAAAAAAAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
19 16 0.31
20 8 0.16
21 18 0.35
22 9 0.18
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (19 bp):
ATAAAATTTAAAAAAAATT
Found at i:20672631 original size:10 final size:10
Alignment explanation
Indices: 20672589--20672631 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
20672579 TAAAATTTAG
20672589 AAAAAAATTT
1 AAAAAAATTT
*
20672599 ATAAAAATTT
1 AAAAAAATTT
*
20672609 AAAAAAA-TA
1 AAAAAAATTT
*
20672618 AAAAAAATGT
1 AAAAAAATTT
20672628 AAAA
1 AAAA
20672632 TTTTATAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 8 0.30
10 19 0.70
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (10 bp):
AAAAAAATTT
Found at i:20672642 original size:11 final size:11
Alignment explanation
Indices: 20672589--20672652 Score: 50
Period size: 10 Copynumber: 6.4 Consensus size: 11
20672579 TAAAATTTAG
20672589 AAAAAAATT-T
1 AAAAAAATTAT
*
20672599 ATAAAAATT-T
1 AAAAAAATTAT
20672609 AAAAAAA-TA-
1 AAAAAAATTAT
*
20672618 AAAAAAA-TGT
1 AAAAAAATTAT
**
20672628 -AAAATTTTAT
1 AAAAAAATTAT
20672638 AAAAAAATTAT
1 AAAAAAATTAT
20672649 AAAA
1 AAAA
20672653 TGCATCAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
9 13 0.31
10 17 0.40
11 12 0.29
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (11 bp):
AAAAAAATTAT
Found at i:20672843 original size:9 final size:9
Alignment explanation
Indices: 20672829--20672913 Score: 59
Period size: 9 Copynumber: 9.2 Consensus size: 9
20672819 CTTTCTGTAC
20672829 ATAATTTTT
1 ATAATTTTT
20672838 ATAATTGTTTT
1 ATAA-T-TTTT
*
20672849 ATGATTTTT
1 ATAATTTTT
20672858 ATAA---TT
1 ATAATTTTT
*
20672864 AAACATTTTT
1 ATA-ATTTTT
*
20672874 ATATTTTTT
1 ATAATTTTT
* *
20672883 ATTAAAATTTA
1 A-T-AATTTTT
20672894 ATAATTTTT
1 ATAATTTTT
20672903 ATAATTTTT
1 ATAATTTTT
20672912 AT
1 AT
20672914 TGTTTTTTAT
Statistics
Matches: 58, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
6 4 0.07
7 1 0.02
9 33 0.57
10 8 0.14
11 12 0.21
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.61
Consensus pattern (9 bp):
ATAATTTTT
Found at i:20673163 original size:93 final size:91
Alignment explanation
Indices: 20673050--20673219 Score: 207
Period size: 93 Copynumber: 1.8 Consensus size: 91
20673040 TTTTTTTGGA
** *
20673050 AAAAGTTTGAGGGCCTTTTTGATACATTTTGAAAGTTCAAA-TACCTAATTGAGTACAAAAAAAA
1 AAAAGTTTGAAAGCCTTTTTGATACATTTTGAAAGTT-AAAGTACCCAATTGAGTAC-AAAAAAA
20673114 TGTAGGAGCTTAATTATTATTATTTTTTT
64 -GTAGGAGCTTAATTATTATTATTTTTTT
* ** ** * *
20673143 AAAAGTTTGAAAGCTTTTTTGATGTATTTTGGTAGTTAAAGTACCCAATTGAGTGCAAATAAAGT
1 AAAAGTTTGAAAGCCTTTTTGATACATTTTGAAAGTTAAAGTACCCAATTGAGTACAAAAAAAGT
*
20673208 AGGGGCTTAATT
66 AGGAGCTTAATT
20673220 TTTTTTTGAA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
91 13 0.20
92 9 0.14
93 43 0.66
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (91 bp):
AAAAGTTTGAAAGCCTTTTTGATACATTTTGAAAGTTAAAGTACCCAATTGAGTACAAAAAAAGT
AGGAGCTTAATTATTATTATTTTTTT
Found at i:20682729 original size:16 final size:17
Alignment explanation
Indices: 20682705--20682738 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
20682695 TTGAAAGTGA
20682705 GGGCTTAATATTAGTAG
1 GGGCTTAATATTAGTAG
20682722 GGGC-TAATATTAGTAG
1 GGGCTTAATATTAGTAG
20682738 G
1 G
20682739 AGAGGACCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.29, C:0.06, G:0.32, T:0.32
Consensus pattern (17 bp):
GGGCTTAATATTAGTAG
Found at i:20700004 original size:41 final size:41
Alignment explanation
Indices: 20699949--20700133 Score: 201
Period size: 41 Copynumber: 4.5 Consensus size: 41
20699939 ATTATTAAGT
* *
20699949 GTTTTCTCATAAACGCCGCTAATGCTCTTACTTTTTACGGT
1 GTTTTCTCATAAACGCCGCTAATGCTCTTACCTTTTACGGC
* * * *
20699990 GTTTTCTCATAAACGCAGCTGATGCTTTTACCTTTTAAGGC
1 GTTTTCTCATAAACGCCGCTAATGCTCTTACCTTTTACGGC
* * * * * *
20700031 GTTTTCTCATAAATGTCGCTAATTCTCTTACCTTTTGCTGA
1 GTTTTCTCATAAACGCCGCTAATGCTCTTACCTTTTACGGC
* * **
20700072 ATTTTAC-CATAAACGCCGCTAATGCCCTTACCTTTTGTGGC
1 GTTTT-CTCATAAACGCCGCTAATGCTCTTACCTTTTACGGC
*
20700113 GTTTTCCCATAAACGCCGCTA
1 GTTTTCTCATAAACGCCGCTA
20700134 CCTTTTATGG
Statistics
Matches: 117, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
40 1 0.01
41 115 0.98
42 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (41 bp):
GTTTTCTCATAAACGCCGCTAATGCTCTTACCTTTTACGGC
Found at i:20701939 original size:15 final size:16
Alignment explanation
Indices: 20701919--20701948 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20701909 ACTCCATACT
20701919 TTAAAT-TTTATTTAC
1 TTAAATGTTTATTTAC
20701934 TTAAATGTTTATTTA
1 TTAAATGTTTATTTA
20701949 TTATTGCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (16 bp):
TTAAATGTTTATTTAC
Found at i:20704663 original size:80 final size:80
Alignment explanation
Indices: 20704530--20704685 Score: 267
Period size: 80 Copynumber: 1.9 Consensus size: 80
20704520 GGTGCAAACC
* * *
20704530 GTTGGTTAATCCAACTAGAGCTGGGCTCACTTATCGTGGTTTATCCGCTAGGCACAGGGTGCCAT
1 GTTGGTTAATCCAACTAGAGCTGGGCTCACTTATCATGGTTTAACCGCTAGGCACAGGATGCCAT
20704595 GAATTGACAAACTTT
66 GAATTGACAAACTTT
**
20704610 GTTGGTTAATCCAACTAGAGCTGGGCTCACTTATCATGGTTTAACCGCTAGGCATTGGATGCCAT
1 GTTGGTTAATCCAACTAGAGCTGGGCTCACTTATCATGGTTTAACCGCTAGGCACAGGATGCCAT
20704675 GAATTGACAAA
66 GAATTGACAAA
20704686 AATTATGAAC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 71 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (80 bp):
GTTGGTTAATCCAACTAGAGCTGGGCTCACTTATCATGGTTTAACCGCTAGGCACAGGATGCCAT
GAATTGACAAACTTT
Found at i:20706697 original size:27 final size:24
Alignment explanation
Indices: 20706654--20706712 Score: 73
Period size: 27 Copynumber: 2.3 Consensus size: 24
20706644 TCTATAATTC
*
20706654 TTTATTTTTCTATTTTCATACTATTTA
1 TTTA-TTTCCTATTTTCA-AC-ATTTA
20706681 TTTTATTTCCTATTTTCAACATTTA
1 -TTTATTTCCTATTTTCAACATTTA
20706706 TTTATTT
1 TTTATTT
20706713 TTATTTATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 7 0.23
25 5 0.17
26 2 0.07
27 12 0.40
28 4 0.13
ACGTcount: A:0.22, C:0.12, G:0.00, T:0.66
Consensus pattern (24 bp):
TTTATTTCCTATTTTCAACATTTA
Found at i:20709130 original size:22 final size:22
Alignment explanation
Indices: 20709105--20709149 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
20709095 TTTTTTAAAA
* *
20709105 ATGAAATGAAAGAACTGAACCT
1 ATGAAAAGAAAGAACTAAACCT
*
20709127 ATGAAAAGAAATAACTAAACCT
1 ATGAAAAGAAAGAACTAAACCT
20709149 A
1 A
20709150 AATTACAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.56, C:0.13, G:0.13, T:0.18
Consensus pattern (22 bp):
ATGAAAAGAAAGAACTAAACCT
Found at i:20713041 original size:30 final size:30
Alignment explanation
Indices: 20713007--20713222 Score: 168
Period size: 30 Copynumber: 7.2 Consensus size: 30
20712997 AAAATTGTTT
*
20713007 TTTGACCCCTAAACTTTCAAAAAATTCAAA
1 TTTGACCCCTAAACTTTCCAAAAATTCAAA
* * *
20713037 TTTGA-TCTTCAAATTTTCCAAAAATTCAAA
1 TTTGACCCCT-AAACTTTCCAAAAATTCAAA
* * * **
20713067 TTTGGCCCTTAAATTTTCCAAAAATTTGAA
1 TTTGACCCCTAAACTTTCCAAAAATTCAAA
* * *
20713097 TTTGA-CCCTCAAATTTTCTAAAAATTCTAA
1 TTTGACCCCT-AAACTTTCCAAAAATTCAAA
* **
20713127 TTT-AACCCTAAACTTTCCAAAAATTCCGA
1 TTTGACCCCTAAACTTTCCAAAAATTCAAA
* * * *
20713156 TTTAACCTCTAAACTTTCTAAAAATTCTAA
1 TTTGACCCCTAAACTTTCCAAAAATTCAAA
* * * ** *
20713186 TTTAACCGCTAAAGTTTTTAAAAATTTAAA
1 TTTGACCCCTAAACTTTCCAAAAATTCAAA
20713216 TTTGACC
1 TTTGACC
20713223 TGGTTTTAAT
Statistics
Matches: 153, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
29 25 0.16
30 125 0.82
31 3 0.02
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (30 bp):
TTTGACCCCTAAACTTTCCAAAAATTCAAA
Found at i:20713174 original size:59 final size:60
Alignment explanation
Indices: 20713013--20713223 Score: 214
Period size: 60 Copynumber: 3.5 Consensus size: 60
20713003 GTTTTTTGAC
* * * * * **
20713013 CCCTAAACTTTCAAAAAATTCAAATTTGATCT-TCAAATTTTCCAAAAATTCAAATTTGG
1 CCCTAAACTTTCCAAAAATTCAGATTTGACCTCTCAAATTTTCTAAAAATTCTAATTTAA
* *
20713072 CCCTTAAATTTTCCAAAAATT-TGAATTTGACC-CTCAAATTTTCTAAAAATTCTAATTTAA
1 CCC-TAAACTTTCCAAAAATTCAG-ATTTGACCTCTCAAATTTTCTAAAAATTCTAATTTAA
* * *
20713132 CCCTAAACTTTCCAAAAATTCCGATTTAACCTCT-AAACTTTCTAAAAATTCTAATTTAA
1 CCCTAAACTTTCCAAAAATTCAGATTTGACCTCTCAAATTTTCTAAAAATTCTAATTTAA
* ** * *
20713191 CCGCTAAAGTTTTTAAAAATTTAAATTTGACCT
1 CC-CTAAACTTTCCAAAAATTCAGATTTGACCT
20713224 GGTTTTAATG
Statistics
Matches: 126, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
59 52 0.41
60 74 0.59
ACGTcount: A:0.39, C:0.19, G:0.04, T:0.37
Consensus pattern (60 bp):
CCCTAAACTTTCCAAAAATTCAGATTTGACCTCTCAAATTTTCTAAAAATTCTAATTTAA
Found at i:20724846 original size:49 final size:50
Alignment explanation
Indices: 20724769--20724894 Score: 148
Period size: 49 Copynumber: 2.5 Consensus size: 50
20724759 ATTGCGATAG
* * * *
20724769 AACGACAAATCTTATACCCCTAAAGCTATAGAG-GAACAGACTGAAG-CGT
1 AACGACAAATCTCATACACCTAAAGCTATAAAGAG-ACAGACTGAAGCCGC
* * *
20724818 AATGGCAAATCTCATACACCTAAAGCTATAAAGAGACAGATTGAAGCCGC
1 AACGACAAATCTCATACACCTAAAGCTATAAAGAGACAGACTGAAGCCGC
* *
20724868 AACGACGAATCTCATTCACCTAAAGCT
1 AACGACAAATCTCATACACCTAAAGCT
20724895 GCAGAGGAGT
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 38 0.59
50 26 0.41
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (50 bp):
AACGACAAATCTCATACACCTAAAGCTATAAAGAGACAGACTGAAGCCGC
Found at i:20725017 original size:40 final size:39
Alignment explanation
Indices: 20724973--20725257 Score: 182
Period size: 40 Copynumber: 7.2 Consensus size: 39
20724963 GACCCTGAAT
*
20724973 TTTTAACCCCGATCATGGGGTAGATTGAAGAAATCCAATC
1 TTTT-ACCCCGATCATGGGGCAGATTGAAGAAATCCAATC
* * * * * * * *
20725013 TTTTA-CCCTAACAAGAAGGTAGATTGGAGACCATCCGATC
1 TTTTACCCCGATCATG-GGGCAGATTGAAGA-AATCCAATC
* * *
20725053 TCTTACCCCGATCATGGGGCAGGTTGAAGGAATCCAATC
1 TTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATC
* ** * ** * * *
20725092 TTTTAACCTAATTAAAGGGCAGATTGAAGACCATTCGATC
1 TTTTACCCCGATCATGGGGCAGATTGAAGA-AATCCAATC
*
20725132 TTTTACCCCGATCATGGGGCAGATTGAAGAAATCTAATC
1 TTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATC
* * ** * * * *
20725171 TTTTA-CCCTAAC-TAGAGACCAAATTGGAGACCATCCGATC
1 TTTTACCCCGATCAT-G-GGGCAGATTGAAGA-AATCCAATC
* * *
20725211 TCTTACCCCGATCATGGGGCAGATTGAA-CAATCCGATC
1 TTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATC
20725249 TTTTACCCC
1 TTTTACCCC
20725258 TAAAGCTATA
Statistics
Matches: 177, Mismatches: 59, Indels: 20
0.69 0.23 0.08
Matches are distributed among these distances:
37 1 0.01
38 29 0.16
39 61 0.34
40 72 0.41
41 13 0.07
42 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (39 bp):
TTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATC
Found at i:20725034 original size:39 final size:38
Alignment explanation
Indices: 20724989--20725182 Score: 136
Period size: 39 Copynumber: 4.9 Consensus size: 38
20724979 CCCCGATCAT
*
20724989 GGGGTAGATTGAAGAAATCCAATCTTTTACCCTAACAA
1 GGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACAA
* * * * * * * * *
20725027 GAAGGTAGATTGGAGACCATCCGATCTCTTACCCCGATCAT
1 G-GGGCAGATTGAAGA-AATCCAATCTTTTA-CCCTAACAA
* * * *
20725068 GGGGCAGGTTGAAGGAATCCAATCTTTTAACCTAATTAA
1 GGGGCAGATTGAAGAAATCCAATCTTTTACCCTAA-CAA
* * * * * * *
20725107 AGGGCAGATTGAAGACCATTCGATCTTTTACCCCGATCAT
1 GGGGCAGATTGAAGA-AATCCAATCTTTTA-CCCTAACAA
*
20725147 GGGGCAGATTGAAGAAATCTAATCTTTTACCCTAAC
1 GGGGCAGATTGAAGAAATCCAATCTTTTACCCTAAC
20725183 TAGAGACCAA
Statistics
Matches: 111, Mismatches: 39, Indels: 12
0.69 0.24 0.07
Matches are distributed among these distances:
38 9 0.08
39 46 0.41
40 46 0.41
41 10 0.09
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (38 bp):
GGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACAA
Found at i:20725260 original size:79 final size:79
Alignment explanation
Indices: 20724978--20725256 Score: 382
Period size: 79 Copynumber: 3.5 Consensus size: 79
20724968 TGAATTTTTA
* * *
20724978 ACCCCGATCATGGGGTAGATTGAAGAAATCCAATCTTTTACCCTAACAAGA-AGGTAGATTGGAG
1 ACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGA-GCAGATTGGAG
20725042 ACCATCCGATCTCTT
65 ACCATCCGATCTCTT
* * * * * * *
20725057 ACCCCGATCATGGGGCAGGTTGAAGGAATCCAATCTTTTAACCTAATTAAAGGGCAGATTGAAGA
1 ACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGAGCAGATTGGAGA
* *
20725122 CCATTCGATCTTTT
66 CCATCCGATCTCTT
* * *
20725136 ACCCCGATCATGGGGCAGATTGAAGAAATCTAATCTTTTACCCTAACTAGAGACCAAATTGGAGA
1 ACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGAGCAGATTGGAGA
20725201 CCATCCGATCTCTT
66 CCATCCGATCTCTT
* *
20725215 ACCCCGATCATGGGGCAGATTGAA-CAATCCGATCTTTTACCC
1 ACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCC
20725257 CTAAAGCTAT
Statistics
Matches: 172, Mismatches: 27, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
78 15 0.09
79 157 0.91
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (79 bp):
ACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGAGCAGATTGGAGA
CCATCCGATCTCTT
Found at i:20726940 original size:30 final size:29
Alignment explanation
Indices: 20726906--20727120 Score: 186
Period size: 30 Copynumber: 7.2 Consensus size: 29
20726896 AAAATTATTT
*
20726906 TTTGACCCCTAAACTTTTCAAAAATTTGAA
1 TTTGACCCCTAAA-TTTTCAAAAATTCGAA
* *
20726936 TTTGAACCCC-GAATTTTCCAAAAATTCAAA
1 TTTG-ACCCCTAAATTTT-CAAAAATTCGAA
* *
20726966 TTTGACCCTTAAATTTTCCAAAAATTTGAA
1 TTTGACCCCTAAATTTT-CAAAAATTCGAA
*
20726996 TTTGA-CCCTCAAATTTTCTAAAAATTCCAA
1 TTTGACCCCT-AAATTTTC-AAAAATTCGAA
* *
20727026 TTTGA-CCCTAAACTTTCTAAAAATTTTG-A
1 TTTGACCCCTAAATTTTC-AAAAA-TTCGAA
* * *
20727055 TTTAACCCCTAAACTTTCCAAAAATTCCAA
1 TTTGACCCCTAAA-TTTTCAAAAATTCGAA
* * *
20727085 TTTAACCCCTAAAGTTTTTAAAAATTCAAA
1 TTTGACCCCTAAA-TTTTCAAAAATTCGAA
20727115 TTTGAC
1 TTTGAC
20727121 TTGGCTTTAA
Statistics
Matches: 153, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
29 32 0.21
30 113 0.74
31 8 0.05
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (29 bp):
TTTGACCCCTAAATTTTCAAAAATTCGAA
Found at i:20726989 original size:60 final size:60
Alignment explanation
Indices: 20726906--20727119 Score: 251
Period size: 60 Copynumber: 3.6 Consensus size: 60
20726896 AAAATTATTT
* *
20726906 TTTGACCCCTAAACTTTTCAAAAATTTGAATTTGAACCCCGAATTTTCCAAAAATTCAAA
1 TTTGACCCCTAAACTTTTCAAAAATTTGAATTTGAACCCCAAATTTTCCAAAAATTCCAA
* *
20726966 TTTGACCCTTAAA-TTTTCCAAAAATTTGAATTTG-ACCCTCAAATTTTCTAAAAATTCCAA
1 TTTGACCCCTAAACTTTT-CAAAAATTTGAATTTGAACCC-CAAATTTTCCAAAAATTCCAA
*
20727026 TTTGA-CCCTAAAC-TTTCTAAAAATTTTG-ATTT-AACCCCTAAACTTTCCAAAAATTCCAA
1 TTTGACCCCTAAACTTTTC-AAAAA-TTTGAATTTGAACCCC-AAATTTTCCAAAAATTCCAA
* * * **
20727085 TTTAACCCCTAAAGTTTTTAAAAATTCAAATTTGA
1 TTTGACCCCTAAACTTTTCAAAAATTTGAATTTGA
20727120 CTTGGCTTTA
Statistics
Matches: 131, Mismatches: 12, Indels: 21
0.80 0.07 0.13
Matches are distributed among these distances:
58 2 0.02
59 54 0.41
60 71 0.54
61 4 0.03
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (60 bp):
TTTGACCCCTAAACTTTTCAAAAATTTGAATTTGAACCCCAAATTTTCCAAAAATTCCAA
Found at i:20732542 original size:39 final size:39
Alignment explanation
Indices: 20732499--20732787 Score: 204
Period size: 39 Copynumber: 7.3 Consensus size: 39
20732489 TTGATCATGA
20732499 GGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAG
1 GGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAG
* * * * * * * **
20732538 GGCAGATGGGAGACCATCCGATCTCTTA-CCTCGATCATGG
1 GGCAGATTGAAGA-AATCCAATCTTTTACCCT-AACCAAAG
* *
20732578 GGCGGATTGAATG-AATCCAATCTTTTACCCTAATCAAAG
1 GGCAGATTGAA-GAAATCCAATCTTTTACCCTAACCAAAG
* * * * * * * **
20732617 GGAAAATTTAAGACCATCCGATCTTTTACCCTGATCATTG
1 GGCAGATTGAAGA-AATCCAATCTTTTACCCTAACCAAAG
* * *
20732657 GGCAGATTGAAGAAATCCAATCTTTCACCTTAACCAGAG
1 GGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAG
* * * * * * **
20732696 GGCATATTGGAGACTATCCGATCTCTTACCCTGACCATGG
1 GGCAGATTGAAGA-AATCCAATCTTTTACCCTAACCAAAG
* * * *
20732736 GGTAGATTGAAGCAATCCAATCTTTTACCCTAACTAAAA
1 GGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAG
20732775 GGCAGATTGAAGA
1 GGCAGATTGAAGA
20732788 GCATCTGATC
Statistics
Matches: 181, Mismatches: 62, Indels: 14
0.70 0.24 0.05
Matches are distributed among these distances:
38 1 0.01
39 95 0.52
40 84 0.46
41 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (39 bp):
GGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAG
Found at i:20732616 original size:79 final size:78
Alignment explanation
Indices: 20732491--20732844 Score: 404
Period size: 79 Copynumber: 4.5 Consensus size: 78
20732481 CTTTTACCTT
* * *
20732491 GATCATGAGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAGATGGGAGACCATC
1 GATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATC
20732556 CGATCTCTTACCTC
66 CGATCTCTTACC-C
* * * * *
20732570 GATCATGGGGCGGATTGAATG-AATCCAATCTTTTACCCTAATCAAAGGGAAAATTTAAGACCAT
1 GATCATGGGGCAGATTGAA-GAAATCCAATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCAT
*
20732634 CCGATCTTTTACCC
65 CCGATCTCTTACCC
* * * * * * *
20732648 TGATCATTGGGCAGATTGAAGAAATCCAATCTTTCACCTTAACCAGAGGGCATATTGGAGACTAT
1 -GATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCAT
20732713 CCGATCTCTTACCC
65 CCGATCTCTTACCC
* * * * * *
20732727 TGACCATGGGGTAGATTGAAGCAATCCAATCTTTTACCCTAACTAAAAGGCAGATTGAAGAGCAT
1 -GATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCAT
* *
20732792 CTGATCTCGTACCCC
65 CCGATCTCTTA-CCC
* * * *
20732807 GATCATGGGACAGATTAAAGCAATCTAATCTTTTACCC
1 GATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCC
20732845 CTAAAGCTAT
Statistics
Matches: 230, Mismatches: 41, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
78 2 0.01
79 224 0.97
80 4 0.02
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.26
Consensus pattern (78 bp):
GATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATC
CGATCTCTTACCC
Found at i:20732718 original size:158 final size:157
Alignment explanation
Indices: 20732479--20732844 Score: 450
Period size: 158 Copynumber: 2.3 Consensus size: 157
20732469 ACAACCCTGA
* *
20732479 ATCTTTTACCTTGATCATGAGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAGA
1 ATCTTTTACCCTGATCATG-GGCAGATTGAAGAAATCCAATCTTTCACCCTAACCAAAGGGCAGA
* *
20732544 TGGGAGACCATCCGATCTCTTA-CCTCGATCATGGGGCGGATTGAATG-AATCCAATCTTTTACC
65 TGGGAGACCATCCGATCTCTTACCCT-GACCATGGGGCAGATTGAA-GCAATCCAATCTTTTACC
* *
20732607 CTAA-TCAAAGGGAAAATTTAAGACCATCCG
128 CTAACT-AAAAGGAAAATTGAAGACCATCCG
* * *
20732637 ATCTTTTACCCTGATCATTGGGCAGATTGAAGAAATCCAATCTTTCACCTTAACCAGAGGGCATA
1 ATCTTTTACCCTGATCA-TGGGCAGATTGAAGAAATCCAATCTTTCACCCTAACCAAAGGGCAGA
* * *
20732702 TTGGAGACTATCCGATCTCTTACCCTGACCATGGGGTAGATTGAAGCAATCCAATCTTTTACCCT
65 TGGGAGACCATCCGATCTCTTACCCTGACCATGGGGCAGATTGAAGCAATCCAATCTTTTACCCT
* * * *
20732767 AACTAAAAGGCAGATTGAAGAGCATCTG
130 AACTAAAAGGAAAATTGAAGACCATCCG
** * * * * *
20732795 ATCTCGTACCCCGATCATGGGACAGATTAAAGCAATCTAATCTTTTACCC
1 ATCTTTTACCCTGATCATGGG-CAGATTGAAGAAATCCAATCTTTCACCC
20732845 CTAAAGCTAT
Statistics
Matches: 179, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
157 5 0.03
158 168 0.94
159 6 0.03
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27
Consensus pattern (157 bp):
ATCTTTTACCCTGATCATGGGCAGATTGAAGAAATCCAATCTTTCACCCTAACCAAAGGGCAGAT
GGGAGACCATCCGATCTCTTACCCTGACCATGGGGCAGATTGAAGCAATCCAATCTTTTACCCTA
ACTAAAAGGAAAATTGAAGACCATCCG
Found at i:20735982 original size:50 final size:50
Alignment explanation
Indices: 20735928--20736037 Score: 118
Period size: 50 Copynumber: 2.2 Consensus size: 50
20735918 TGTAATAGGA
20735928 AATCTTATACACCTAAAACTATA-AAGAG-GTAGATTGAAGTCGCAACGG-TG
1 AATCTTATACACCTAAAACTATAGAAGAGCG--GATTGAAGTCGCAA-GGATG
* * * * * *
20735978 AATCTCATTCACCTAAAGCTGTAGAGGAGCGGATTGAAGTCGTAAGGATG
1 AATCTTATACACCTAAAACTATAGAAGAGCGGATTGAAGTCGCAAGGATG
20736028 AATCTTATAC
1 AATCTTATAC
20736038 TCCTGAAGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
49 2 0.04
50 42 0.86
51 4 0.08
52 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (50 bp):
AATCTTATACACCTAAAACTATAGAAGAGCGGATTGAAGTCGCAAGGATG
Found at i:20736136 original size:39 final size:39
Alignment explanation
Indices: 20736093--20736378 Score: 281
Period size: 39 Copynumber: 7.3 Consensus size: 39
20736083 CCCGATCATG
*
20736093 GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAA
1 GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAGA
* * * * * ** * *
20736132 GGGCAGATGGGAGACTATCCGATCTCTTACCCCGATCATA
1 GGGCAGATTGAAGA-AATCCAATCTTTTACCCTAACCAGA
* *
20736172 GGGCAGATTGAAGGAATCCAATCTTTTACCCTAATCAGA
1 GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAGA
* ** *
20736211 GGGCAGATTGAAGAACATCCAATCTTTTGCCCCGATCATG-
1 GGGCAGATTGAAGAA-ATCCAATCTTTTACCCTAACCA-GA
*
20736251 GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGA
1 GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAGA
* * * * *
20736290 GGGCAAATTGGAA-ACCATCCGATCTCTTACCCTGACCACGA
1 GGGCAGATT-GAAGA-AATCCAATCTTTTACCCTAACCA-GA
* *
20736331 -GGCAGATTGAAGCAATCCAATCTTTTACCCTAACTAGA
1 GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAGA
20736369 GGGCAGATTG
1 GGGCAGATTG
20736379 TAGAGCATCC
Statistics
Matches: 198, Mismatches: 40, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
38 3 0.02
39 101 0.51
40 91 0.46
41 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (39 bp):
GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAGA
Found at i:20736175 original size:40 final size:38
Alignment explanation
Indices: 20736073--20736436 Score: 243
Period size: 39 Copynumber: 9.2 Consensus size: 38
20736063 TACAACCCTG
*
20736073 AATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCC
1 AATCTTTTACCCCGATCATAGGGCAGATTGAAG-AATCC
** * * * *
20736112 AATCTTTTACCCTAACCAAAGGGCAGATGGGAGACTATCC
1 AATCTTTTACCCCGATCATAGGGCAGATTGAAGA--ATCC
* *
20736152 GATCTCTTACCCCGATCATAGGGCAGATTGAAGGAATCC
1 AATCTTTTACCCCGATCATAGGGCAGATTGAA-GAATCC
** *
20736191 AATCTTTTACCCTAATCAGAGGGCAGATTGAAGAACATCC
1 AATCTTTTACCCCGATCATAGGGCAGATTGAAG-A-ATCC
* *
20736231 AATCTTTTGCCCCGATCATGGGGCAGATTGAAGAAATCC
1 AATCTTTTACCCCGATCATAGGGCAGATTGAAG-AATCC
* * * *
20736270 AATCTTTTA-CCCTAACTAGAGGGCAAATTGGAA-ACCATCC
1 AATCTTTTACCCCGATC-ATAGGGCAGATT-GAAGA--ATCC
* * * * *
20736310 GATCTCTTACCCTGACCA-CGAGGCAGATTGAAGCAATCC
1 AATCTTTTACCCCGATCATAG-GGCAGATTGAAG-AATCC
* * * *
20736349 AATCTTTTA-CCCTAACTAGAGGGCAGATTGTAGAGCATCC
1 AATCTTTTACCCCGATC-ATAGGGCAGATTG-A-AGAATCC
** * * *
20736389 GGTCTCTTACCCCGATCAT-GCGACAGATTGAAGCAATCT
1 AATCTTTTACCCCGATCATAG-GGCAGATTGAAG-AATCC
20736428 AATCTTTTA
1 AATCTTTTA
20736437 TCCTTAAAGC
Statistics
Matches: 248, Mismatches: 57, Indels: 40
0.72 0.17 0.12
Matches are distributed among these distances:
38 14 0.06
39 115 0.46
40 105 0.42
41 14 0.06
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (38 bp):
AATCTTTTACCCCGATCATAGGGCAGATTGAAGAATCC
Found at i:20736214 original size:79 final size:78
Alignment explanation
Indices: 20736074--20736436 Score: 467
Period size: 79 Copynumber: 4.6 Consensus size: 78
20736064 ACAACCCTGA
* * *
20736074 ATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAGA
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAGA
*
20736139 TGGGAGACTATCCG
66 TTGGAGAC-ATCCG
* *
20736153 ATCTCTTACCCCGATCATAGGGCAGATTGAAGGAATCCAATCTTTTACCCTAA-TCAGAGGGCAG
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACT-AGAGGGCAG
* *
20736217 ATTGAAGAACATCCA
65 ATTGGAG-ACATCCG
* * *
20736232 ATCTTTTGCCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAAA
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAGA
*
20736297 TTGGAAACCATCCG
66 TTGGAGA-CATCCG
* * * * *
20736311 ATCTCTTACCCTGACCACGAGGCAGATTGAAGCAATCCAATCTTTTACCCTAACTAGAGGGCAGA
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAGA
*
20736376 TTGTAGAGCATCCG
66 TTGGAGA-CATCCG
* * * * *
20736390 GTCTCTTACCCCGATCATGCGACAGATTGAAGCAATCTAATCTTTTA
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTA
20736437 TCCTTAAAGC
Statistics
Matches: 246, Mismatches: 34, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
78 1 0.00
79 242 0.98
80 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (78 bp):
ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAGA
TTGGAGACATCCG
Found at i:20736315 original size:158 final size:158
Alignment explanation
Indices: 20736073--20736436 Score: 516
Period size: 158 Copynumber: 2.3 Consensus size: 158
20736063 TACAACCCTG
*
20736073 AATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAG
1 AATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAA
* * * *
20736138 ATGGGAGACTATCCGATCTCTTACCCCGATCATAG-GGCAGATTGAAGGAATCCAATCTTTTACC
66 ATGGGAAACCATCCGATCTCTTACCCCGACCA-AGAGGCAGATTGAAGCAATCCAATCTTTTACC
20736202 CTAA-TCAGAGGGCAGATTGAAGAACATCC
130 CTAACT-AGAGGGCAGATTGAAGAACATCC
* * *
20736231 AATCTTTTGCCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAA
1 AATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAA
* * *
20736296 ATTGGAAACCATCCGATCTCTTACCCTGACCACGAGGCAGATTGAAGCAATCCAATCTTTTACCC
66 ATGGGAAACCATCCGATCTCTTACCCCGACCAAGAGGCAGATTGAAGCAATCCAATCTTTTACCC
* *
20736361 TAACTAGAGGGCAGATTGTAGAGCATCC
131 TAACTAGAGGGCAGATTGAAGAACATCC
** * * * * *
20736389 GGTCTCTTACCCCGATCATGCGACAGATTGAAGCAATCTAATCTTTTA
1 AATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTA
20736437 TCCTTAAAGC
Statistics
Matches: 183, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
157 1 0.01
158 181 0.99
159 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (158 bp):
AATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAA
ATGGGAAACCATCCGATCTCTTACCCCGACCAAGAGGCAGATTGAAGCAATCCAATCTTTTACCC
TAACTAGAGGGCAGATTGAAGAACATCC
Found at i:20738143 original size:30 final size:30
Alignment explanation
Indices: 20738109--20738269 Score: 168
Period size: 29 Copynumber: 5.4 Consensus size: 30
20738099 AAAATTGTTT
* *
20738109 TTTGACCCCTAAACTTCCCAAAAAATTGAA
1 TTTGACCCCTAAACTTTCCAAAAATTTGAA
**
20738139 TTTGAACCCC-AAGTTTTCCAAAAATTTGAA
1 TTTG-ACCCCTAAACTTTCCAAAAATTTGAA
* ** **
20738169 TTTGAACCC-AAGTTTTCCAAAAATTCAAA
1 TTTGACCCCTAAACTTTCCAAAAATTTGAA
* *
20738198 TTTGACCCCTAAACTTTCTAAAAATTTCAA
1 TTTGACCCCTAAACTTTCCAAAAATTTGAA
*
20738228 TTTAACCCCTAAAC-TTCCAAAAATTCTG-A
1 TTTGACCCCTAAACTTTCCAAAAATT-TGAA
20738257 TTTGACCCCTAAA
1 TTTGACCCCTAAA
20738270 GTTTTAAAAA
Statistics
Matches: 111, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
29 53 0.48
30 53 0.48
31 5 0.05
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (30 bp):
TTTGACCCCTAAACTTTCCAAAAATTTGAA
Found at i:20738178 original size:29 final size:29
Alignment explanation
Indices: 20738126--20738235 Score: 123
Period size: 30 Copynumber: 3.8 Consensus size: 29
20738116 CCTAAACTTC
*
20738126 CCAAAAAATTGAATTTGAACCCCAAGTTTT
1 CCAAAAATTTGAATTTGAA-CCCAAGTTTT
20738156 CCAAAAATTTGAATTTGAACCCAAGTTTT
1 CCAAAAATTTGAATTTGAACCCAAGTTTT
** * **
20738185 CCAAAAATTCAAATTTGACCCCTAAACTTT
1 CCAAAAATTTGAATTTGAACCC-AAGTTTT
* *
20738215 CTAAAAATTTCAATTT-AACCC
1 CCAAAAATTTGAATTTGAACCC
20738236 CTAAACTTCC
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
29 33 0.48
30 36 0.52
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.32
Consensus pattern (29 bp):
CCAAAAATTTGAATTTGAACCCAAGTTTT
Found at i:20738246 original size:59 final size:59
Alignment explanation
Indices: 20738113--20738293 Score: 174
Period size: 59 Copynumber: 3.1 Consensus size: 59
20738103 TTGTTTTTTG
* ** * *
20738113 ACCCCTAAACTTCCCAAAAAATT-GAATTTGAACCCC-AAGTTTTCCAAAAATTTGAATTTGA
1 ACCCCTAAACTT-CC-AAAAATTCAAATTTG-ACCCCTAAACTTTCTAAAAATTTCAATTT-A
**
20738174 A-CCC-AAGTTTTCCAAAAATTCAAATTTGACCCCTAAACTTTCTAAAAATTTCAATTTA
1 ACCCCTAA-ACTTCCAAAAATTCAAATTTGACCCCTAAACTTTCTAAAAATTTCAATTTA
** * *
20738232 ACCCCTAAACTTCCAAAAATTCTGATTTGACCCCTAAAGTTT-TAAAAAATTCAAATTTA
1 ACCCCTAAACTTCCAAAAATTCAAATTTGACCCCTAAACTTTCTAAAAATTTC-AATTTA
20738291 ACC
1 ACC
20738294 TGGTTTTAAT
Statistics
Matches: 101, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
58 23 0.23
59 70 0.69
60 7 0.07
61 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (59 bp):
ACCCCTAAACTTCCAAAAATTCAAATTTGACCCCTAAACTTTCTAAAAATTTCAATTTA
Found at i:20738259 original size:29 final size:30
Alignment explanation
Indices: 20738109--20738289 Score: 149
Period size: 29 Copynumber: 6.1 Consensus size: 30
20738099 AAAATTGTTT
* *
20738109 TTTGACCCCTAAACTTCCCAAAAAATT-GAA
1 TTTGACCCCTAAACTTTCC-AAAAATTCTAA
**
20738139 TTTGAACCCC-AAGTTTTCCAAAAATT-TGAA
1 TTTG-ACCCCTAAACTTTCCAAAAATTCT-AA
* ** *
20738169 TTTGAACCC-AAGTTTTCCAAAAATTCAAA
1 TTTGACCCCTAAACTTTCCAAAAATTCTAA
*
20738198 TTTGACCCCTAAACTTTCTAAAAATT-TCAA
1 TTTGACCCCTAAACTTTCCAAAAATTCT-AA
* *
20738228 TTTAACCCCTAAAC-TTCCAAAAATTCTGA
1 TTTGACCCCTAAACTTTCCAAAAATTCTAA
* ** *
20738257 TTTGACCCCTAAAGTTTTAAAAAATTCAAA
1 TTTGACCCCTAAACTTTCCAAAAATTCTAA
20738287 TTT
1 TTT
20738290 AACCTGGTTT
Statistics
Matches: 124, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
29 60 0.48
30 59 0.48
31 5 0.04
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (30 bp):
TTTGACCCCTAAACTTTCCAAAAATTCTAA
Found at i:20748329 original size:50 final size:50
Alignment explanation
Indices: 20748152--20748329 Score: 155
Period size: 50 Copynumber: 3.6 Consensus size: 50
20748142 ATTACGATAG
* * * * *
20748152 AACGACAAATC-CTATACCCCTAAAGATGTAGAGGAACGGATTGAAGTCGT
1 AACGGCAAATCTC-ATACACCTAAAGCTGTAGAGGAGCAGATTGAAGTCGT
* * * * * *
20748202 AATGGTAAATCTCATACACCTAAAGCTATA-AAGAGGCAGATTGAAGCCGC
1 AACGGCAAATCTCATACACCTAAAGCTGTAGAGGA-GCAGATTGAAGTCGT
** * *
20748252 AACGGGGAATCTCATTCACCTAAAGCTGTAGAGGAGCATATTGAAGTCGT
1 AACGGCAAATCTCATACACCTAAAGCTGTAGAGGAGCAGATTGAAGTCGT
* *
20748302 AA-GGACAAATCTTATACTCCTAAAGCTG
1 AACGG-CAAATCTCATACACCTAAAGCTG
20748330 AGGTGGAGTG
Statistics
Matches: 99, Mismatches: 25, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
49 5 0.05
50 90 0.91
51 4 0.04
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (50 bp):
AACGGCAAATCTCATACACCTAAAGCTGTAGAGGAGCAGATTGAAGTCGT
Found at i:20748444 original size:40 final size:40
Alignment explanation
Indices: 20748354--20748721 Score: 258
Period size: 39 Copynumber: 9.3 Consensus size: 40
20748344 TACAACCCCG
** * * *
20748354 AATCTTTTACCCCGATCATG-GGGTAGATTGAAGA-AATCT
1 AATCTTTTACCCTAATCA-GAGGGCAGATTGAAGACCATCC
* *
20748393 AATCTTTTACCTTAA-CTAGAGGGCAGATTGGAGACCATCC
1 AATCTTTTACCCTAATC-AGAGGGCAGATTGAAGACCATCC
* * * *
20748433 GATCTCTTA-CCTCGATCATAGGGCAGATTGAAGGA--ATCC
1 AATCTTTTACCCT-AATCAGAGGGCAGATTGAA-GACCATCC
* * *
20748472 AATCTTTTACCCTAATCAGAGGGTAGAATGAAGATCATCC
1 AATCTTTTACCCTAATCAGAGGGCAGATTGAAGACCATCC
* ** * * *
20748512 GATCTTTTACCCCGATCATGA-GGCGGATTAAAGA-AATCC
1 AATCTTTTACCCTAATCA-GAGGGCAGATTGAAGACCATCC
* * *
20748551 AACCTTTTACCCTAA-CTAGAGGTCAGATTGGAGACCATCC
1 AATCTTTTACCCTAATC-AGAGGGCAGATTGAAGACCATCC
* * ** * *
20748591 GATCTCTTACCCCGACCATG-GGGCAGATTGAAG-CAATCC
1 AATCTTTTACCCTAATCA-GAGGGCAGATTGAAGACCATCC
*
20748630 AATCTTTTACCCTAATCAGAGGGTAGATTGAAGACCATCC
1 AATCTTTTACCCTAATCAGAGGGCAGATTGAAGACCATCC
* ** * *
20748670 AATCTCTTACCCCGATCATG-GGGCAGATTGAAG-CAATTC
1 AATCTTTTACCCTAATCA-GAGGGCAGATTGAAGACCATCC
20748709 AATCTTTTACCCT
1 AATCTTTTACCCT
20748722 TAAAGCTATA
Statistics
Matches: 252, Mismatches: 59, Indels: 36
0.73 0.17 0.10
Matches are distributed among these distances:
38 8 0.03
39 123 0.49
40 113 0.45
41 8 0.03
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (40 bp):
AATCTTTTACCCTAATCAGAGGGCAGATTGAAGACCATCC
Found at i:20748461 original size:79 final size:79
Alignment explanation
Indices: 20748355--20748721 Score: 486
Period size: 79 Copynumber: 4.6 Consensus size: 79
20748345 ACAACCCCGA
* * * *
20748355 ATCTTTTACCCCGATCATGGGGTAGATTGAAGAAATCTAATCTTTTACCTTAA-CTAGAGGGCAG
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAATC-AGAGGGCAG
*
20748419 ATTGGAGACCATCCG
65 ATTGAAGACCATCCG
* * * *
20748434 ATCTCTTACCTCGATCATAGGGCAGATTGAAGGAATCCAATCTTTTACCCTAATCAGAGGGTAGA
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAATCAGAGGGCAGA
* *
20748499 ATGAAGATCATCCG
66 TTGAAGACCATCCG
* * * * * *
20748513 ATCTTTTACCCCGATCATGAGGCGGATTAAAGAAATCCAACCTTTTACCCTAA-CTAGAGGTCAG
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAATC-AGAGGGCAG
*
20748577 ATTGGAGACCATCCG
65 ATTGAAGACCATCCG
* * *
20748592 ATCTCTTACCCCGACCATGGGGCAGATTGAAGCAATCCAATCTTTTACCCTAATCAGAGGGTAGA
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAATCAGAGGGCAGA
*
20748657 TTGAAGACCATCCA
66 TTGAAGACCATCCG
* *
20748671 ATCTCTTACCCCGATCATGGGGCAGATTGAAGCAATTCAATCTTTTACCCT
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCT
20748722 TAAAGCTATA
Statistics
Matches: 248, Mismatches: 37, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
78 1 0.00
79 245 0.99
80 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (79 bp):
ATCTCTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAATCAGAGGGCAGA
TTGAAGACCATCCG
Done.