Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 65 of 135
Found at i:21698517 original size:12 final size:12
Alignment explanation
Indices: 21698502--21698526 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21698492 AAAAAAAATG
21698502 AGAAAAAAAGAA
1 AGAAAAAAAGAA
21698514 AGAAAAAAAGAA
1 AGAAAAAAAGAA
21698526 A
1 A
21698527 AAGAATAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AGAAAAAAAGAA
Found at i:21702599 original size:37 final size:37
Alignment explanation
Indices: 21702552--21702674 Score: 151
Period size: 37 Copynumber: 3.3 Consensus size: 37
21702542 ACATCCAAAT
* *
21702552 TTGCTCCCAAAAATGCTGCCGCATGAGCATTTCTAGA
1 TTGCACCCAAAAATGCTACCGCATGAGCATTTCTAGA
21702589 TTGCACCCAAAAACTG-TCACCGCATGAGCATTTCTAGA
1 TTGCACCCAAAAA-TGCT-ACCGCATGAGCATTTCTAGA
* * * * *
21702627 TTGCGCCCAATACTGCCACCGCATGAGCACTTCTAGA
1 TTGCACCCAAAAATGCTACCGCATGAGCATTTCTAGA
21702664 TTGCA-CCAAAA
1 TTGCACCCAAAA
21702675 CTATCACCGC
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
36 5 0.07
37 38 0.51
38 31 0.42
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (37 bp):
TTGCACCCAAAAATGCTACCGCATGAGCATTTCTAGA
Found at i:21702615 original size:38 final size:37
Alignment explanation
Indices: 21702570--21702685 Score: 171
Period size: 37 Copynumber: 3.1 Consensus size: 37
21702560 AAAAATGCTG
21702570 CCGCATGAGCATTTCTAGATTGCACCCAAAAACTGTCA
1 CCGCATGAGCATTTCTAGATTGCACCC-AAAACTGTCA
* * *
21702608 CCGCATGAGCATTTCTAGATTGCGCCCAATACTGCCA
1 CCGCATGAGCATTTCTAGATTGCACCCAAAACTGTCA
* *
21702645 CCGCATGAGCACTTCTAGATTGCA-CCAAAACTATCA
1 CCGCATGAGCATTTCTAGATTGCACCCAAAACTGTCA
21702681 CCGCA
1 CCGCA
21702686 GGAATATTTC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
36 14 0.20
37 30 0.43
38 26 0.37
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.22
Consensus pattern (37 bp):
CCGCATGAGCATTTCTAGATTGCACCCAAAACTGTCA
Found at i:21707182 original size:37 final size:37
Alignment explanation
Indices: 21707124--21707207 Score: 107
Period size: 37 Copynumber: 2.3 Consensus size: 37
21707114 CCAAATTCGT
* * * *
21707124 GCCCAAAACTGTCGCCGCATGAGCATTTCTAGATTGC
1 GCCCAAAACTGTCACCACATGAGCACTTCCAGATTGC
*
21707161 GCCCAAAACTGTCACCACATGAGTACTTCCAGATTGC
1 GCCCAAAACTGTCACCACATGAGCACTTCCAGATTGC
*
21707198 -ACCAAAACTG
1 GCCCAAAACTG
21707208 CCATTAGAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
36 9 0.22
37 32 0.78
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (37 bp):
GCCCAAAACTGTCACCACATGAGCACTTCCAGATTGC
Found at i:21707347 original size:26 final size:26
Alignment explanation
Indices: 21707315--21707368 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
21707305 CACCCACGAA
21707315 TGTCGCTGCATGAACATGTACAGAAT
1 TGTCGCTGCATGAACATGTACAGAAT
* * *
21707341 TGTCGCTGCCTGAACGTGTTCAGAAT
1 TGTCGCTGCATGAACATGTACAGAAT
21707367 TG
1 TG
21707369 CGCCCAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
TGTCGCTGCATGAACATGTACAGAAT
Found at i:21724912 original size:17 final size:17
Alignment explanation
Indices: 21724873--21724921 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
21724863 ATATATATGG
* **
21724873 AAATGCAATGACAATGT
1 AAATGCAGTGACAATAA
*
21724890 AGATGCAGTGACAATAA
1 AAATGCAGTGACAATAA
*
21724907 AAATGCAGGGACAAT
1 AAATGCAGTGACAAT
21724922 TATACTACAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.47, C:0.12, G:0.22, T:0.18
Consensus pattern (17 bp):
AAATGCAGTGACAATAA
Found at i:21727100 original size:16 final size:16
Alignment explanation
Indices: 21727079--21727109 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21727069 ATAATGTGAA
21727079 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
21727095 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
21727110 GGATCCACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:21727585 original size:20 final size:20
Alignment explanation
Indices: 21727560--21727599 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
21727550 GAGAATACTA
21727560 TTCCTAGGCTACTCAAAATG
1 TTCCTAGGCTACTCAAAATG
21727580 TTCCTAGGCTACTCAAAATG
1 TTCCTAGGCTACTCAAAATG
21727600 CTCCCTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (20 bp):
TTCCTAGGCTACTCAAAATG
Found at i:21727970 original size:26 final size:26
Alignment explanation
Indices: 21727928--21727985 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
21727918 ATTCTGGGTT
21727928 CAATTCTGGACACGTTCATGCAGCGA
1 CAATTCTGGACACGTTCATGCAGCGA
* *
21727954 CAATTCTGTACATGTTCATGCAGCGA
1 CAATTCTGGACACGTTCATGCAGCGA
21727980 C-ATTCT
1 CAATTCT
21727986 TGGGTACAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 5 0.17
26 25 0.83
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (26 bp):
CAATTCTGGACACGTTCATGCAGCGA
Found at i:21736877 original size:13 final size:14
Alignment explanation
Indices: 21736848--21736877 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
21736838 TTTGGTACAT
21736848 TGACATTTAACCTC
1 TGACATTTAACCTC
21736862 TGACATTTAA-CTC
1 TGACATTTAACCTC
21736875 TGA
1 TGA
21736878 TTACGTTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:21742021 original size:37 final size:37
Alignment explanation
Indices: 21741980--21742081 Score: 143
Period size: 37 Copynumber: 2.8 Consensus size: 37
21741970 TCATTGCATT
** * *
21741980 AGCACTTTTAGATTGCACCCAAAACTGTCATCGA-ATG
1 AGCACTTCCAGATTACACCCAAAACTGTCA-CCACATG
*
21742017 AGCACTTCCAGATTACACCCAAAACTTTCACCACATG
1 AGCACTTCCAGATTACACCCAAAACTGTCACCACATG
21742054 AGCACTTCCAGATTACACCCAAAACTGT
1 AGCACTTCCAGATTACACCCAAAACTGT
21742082 TGCCTGTAGG
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
36 2 0.03
37 56 0.97
ACGTcount: A:0.34, C:0.30, G:0.12, T:0.24
Consensus pattern (37 bp):
AGCACTTCCAGATTACACCCAAAACTGTCACCACATG
Found at i:21742202 original size:37 final size:38
Alignment explanation
Indices: 21742110--21742183 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 38
21742100 TAGAATACAC
* *
21742110 CCAAGACTGTCACTACATAAATATTCTTCAAATTGCAT
1 CCAAAACTGTCACTGCATAAATATTCTTCAAATTGCAT
* * *
21742148 CCAAAACTATCGCTGCATAAGTATTCTTC-AATTGCA
1 CCAAAACTGTCACTGCATAAATATTCTTCAAATTGCA
21742184 CCTAGGAATG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
37 7 0.23
38 24 0.77
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.31
Consensus pattern (38 bp):
CCAAAACTGTCACTGCATAAATATTCTTCAAATTGCAT
Found at i:21743705 original size:40 final size:40
Alignment explanation
Indices: 21743661--21743736 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
21743651 AAACATGTTG
*
21743661 TGTTGCGACAT-GGGAGGTTTGTCACGACATAGACATTATA
1 TGTTGCGACATAGGG-GGTTTGTCACAACATAGACATTATA
* **
21743701 TGTTGTGACATAGGGGGTTTGTTGCAACATAGACAT
1 TGTTGCGACATAGGGGGTTTGTCACAACATAGACAT
21743737 GCTATGTCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 28 0.90
41 3 0.10
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (40 bp):
TGTTGCGACATAGGGGGTTTGTCACAACATAGACATTATA
Found at i:21754162 original size:15 final size:16
Alignment explanation
Indices: 21754139--21754172 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
21754129 ATCTCGTTTC
*
21754139 AAAAGCTAAGAAC-AA
1 AAAAACTAAGAACTAA
21754154 AAAAACTAAGAACTAA
1 AAAAACTAAGAACTAA
21754170 AAA
1 AAA
21754173 TTAAAGGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.71, C:0.12, G:0.09, T:0.09
Consensus pattern (16 bp):
AAAAACTAAGAACTAA
Found at i:21762414 original size:21 final size:20
Alignment explanation
Indices: 21762362--21762418 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 20
21762352 CTGACTTAGG
21762362 TTGTATCGGTAGTTCTGTAC
1 TTGTATCGGTAGTTCTGTAC
*
21762382 TTAGAAGTATCGGTAGTTTGTGTAC
1 TT----GTATCGGTAG-TTCTGTAC
21762407 TTGTATCGGTAG
1 TTGTATCGGTAG
21762419 AAGTTACAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
20 2 0.06
21 10 0.32
24 10 0.32
25 9 0.29
ACGTcount: A:0.19, C:0.11, G:0.28, T:0.42
Consensus pattern (20 bp):
TTGTATCGGTAGTTCTGTAC
Found at i:21774830 original size:75 final size:75
Alignment explanation
Indices: 21774743--21774981 Score: 193
Period size: 75 Copynumber: 3.2 Consensus size: 75
21774733 TTCAAAAGGT
*
21774743 CATCTTCCTGATGAAATACAGAGAAGTAGACCAAATCAATAAAGCGAAGCTCAATACGAATGAGA
1 CATCTTCCTGATGAAATACAAAGAAGTAGACCAAATCAATAAAGCGAAGCTCAATACGAATGAGA
21774808 CTTCAAACCC
66 CTTCAAACCC
* * * * * * * *
21774818 CATCTTTCTGATGAGATACAAAGAAGTGGACCAGATCCGTCGAGATACAGAGAAG-TGGATTA--
1 CATCTTCCTGATGAAATACAAAGAAGTAGACCA-A---ATC-A-ATAAAGCGAAGCT-CAATACG
* * * **
21774880 AATCA-A--TGAAGCGAT
59 AATGAGACTTCAAAC-CC
* * *
21774895 CATCTTCCTGATGAGATACAAAGAAGTAAACCAAATCAATGAAGCGAAGCTCAATACGAATGAGA
1 CATCTTCCTGATGAAATACAAAGAAGTAGACCAAATCAATAAAGCGAAGCTCAATACGAATGAGA
*
21774960 CTTTAAACCC
66 CTTCAAACCC
*
21774970 CATCTTTCTGAT
1 CATCTTCCTGAT
21774982 AAGATATAGA
Statistics
Matches: 121, Mismatches: 29, Indels: 28
0.68 0.16 0.16
Matches are distributed among these distances:
71 11 0.09
72 2 0.02
73 6 0.05
74 1 0.01
75 40 0.33
76 10 0.08
77 30 0.25
78 1 0.01
79 6 0.05
80 2 0.02
81 12 0.10
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (75 bp):
CATCTTCCTGATGAAATACAAAGAAGTAGACCAAATCAATAAAGCGAAGCTCAATACGAATGAGA
CTTCAAACCC
Found at i:21775258 original size:160 final size:160
Alignment explanation
Indices: 21774898--21775260 Score: 469
Period size: 160 Copynumber: 2.3 Consensus size: 160
21774888 AAGCGATCAT
*
21774898 CTTCCTGATGAGATACAAAGAAGTAAACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTT
1 CTTCCTGATGAGATACAGAGAAGTAAACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTT
* * * * * *
21774963 TAAACCCCATCTTTCTGATAAGATATAGAGAAATGGGTCAAAACAATAAAGTGGTCATCTTCCTA
66 CAAACCCCATCTTCCTGATAAGATACAAAGAAATGGGCCAAAACAATAAAGCGGTCATCTTCCTA
*
21775028 ATGAGATACAGAGAAGTGGACCAAATCTGC
131 ATGAGATACAGAGAAGTGGACCAAATCCGC
* * **
21775058 CTTCCTGATGAGATATAGAGAAGTAAACCAAATAAATGAAGCTCAGCTCAATACGAATGAGACTT
1 CTTCCTGATGAGATACAGAGAAGTAAACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTT
* * **
21775123 CAAACCCCATCTTCCT-ACTGAGATACAAAGAAGTGGGCCAAAACAATAAAGCGGTCATCTTTTT
66 CAAACCCCATCTTCCTGA-TAAGATACAAAGAAATGGGCCAAAACAATAAAGCGGTCATCTTCCT
* * *
21775187 GATGATG-TACAGTGAAGTGGACCAAATCCGT
130 AATGA-GATACAGAGAAGTGGACCAAATCCGC
* * ** **
21775218 TTTCCTGATAAGATACAGAGAAGTGGATTAAATCAATGAAGCG
1 CTTCCTGATGAGATACAGAGAAGTAAACCAAATCAATGAAGCG
21775261 GTCATCTTCT
Statistics
Matches: 173, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
159 1 0.01
160 171 0.99
161 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (160 bp):
CTTCCTGATGAGATACAGAGAAGTAAACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTT
CAAACCCCATCTTCCTGATAAGATACAAAGAAATGGGCCAAAACAATAAAGCGGTCATCTTCCTA
ATGAGATACAGAGAAGTGGACCAAATCCGC
Found at i:21775283 original size:85 final size:85
Alignment explanation
Indices: 21775143--21775299 Score: 217
Period size: 85 Copynumber: 1.8 Consensus size: 85
21775133 CTTCCTACTG
* * * *
21775143 AGATACAAAGAAGTGGGCCAAAACAATAAAGCGGTCATCTTTTTGATGATGTACAGTGAAGTGGA
1 AGATACAAAGAAGTGGACCAAAACAATAAAGCGGTCATCTTCTTGATGATGTACAGAGAAGTAGA
21775208 CCAAATCCGTTTTCCTGATA
66 CCAAATCCGTTTTCCTGATA
* ** * *
21775228 AGATACAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCTTGATGA-GATACAGAGAAGTAG
1 AGATACAAAGAAGTGGACCAAAACAATAAAGCGGTCATCTTCTTGATGATG-TACAGAGAAGTAG
21775292 ACCAAATC
65 ACCAAATC
21775300 AATGAAGCAA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
84 1 0.02
85 61 0.98
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (85 bp):
AGATACAAAGAAGTGGACCAAAACAATAAAGCGGTCATCTTCTTGATGATGTACAGAGAAGTAGA
CCAAATCCGTTTTCCTGATA
Found at i:21775419 original size:207 final size:207
Alignment explanation
Indices: 21775058--21775588 Score: 658
Period size: 207 Copynumber: 2.6 Consensus size: 207
21775048 CCAAATCTGC
* * ** *
21775058 CTTCCTGATGAGATATAGAGAAGTAAACCAAATAAATGAAGCTCAGCTCAATACGAATGAGACTT
1 CTTCCTGATGAGATATAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATACGAATGAGACCT
* * * * **
21775123 CAAACCCCATCTTCCT-ACTGAGATACAAAGAAGTGGGCCAAAACAATAAAGCGGTCATCTTTTT
66 C-AACCCCATCTTCCTGA-TGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCAGTCATCTTCCT
* ** *
21775187 GATGATGTACAGTGAAGTGGACCAAATCCGTTTTCCTGATAAGATACAGAGAAGTGGATTAAATC
129 GATGATGTACAGAGAAGTGGACCAAATCCGCCTTCCTGATAAGATACAGAGAAGTGAATTAAATC
*
21775252 AATGAAGCGGTCAT
194 AATGAAGCGATCAT
* * * * *
21775266 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAATCTTAATACAAATGAGACCT
1 CTTCCTGATGAGATATAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATACGAATGAGACCT
* *
21775331 CAACCCCATCTTCCTGATGAGATATAGAGAAGTGTGTCAAAGCAATAAAGCAGTCATCTTCCCT-
66 CAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCAGTCATCTT-CCTG
* *
21775395 ATGA-GATACAGAGAAGTGGACCAAATCTGCCTTCCTGATAAGATATAGAGAAGTGAATTAAATC
130 ATGATG-TACAGAGAAGTGGACCAAATCCGCCTTCCTGATAAGATACAGAGAAGTGAATTAAATC
21775459 AATGAAGCGATCAT
194 AATGAAGCGATCAT
* * * * * *
21775473 CTTCCTAATGAGATATAGAGAAGTAGTA-CGAATCAACGAAGCGAAGCTCAAAACGAATGAGTTT
1 CTTCCTGATGAGATATAGAGAAGTAG-ACCAAATCAATGAAGCAAAGCTCAATACGAATGAG--A
* * *
21775537 CC-AAACCTCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGTAATAAAG
63 CCTCAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAG
21775589 TGACCGTCTT
Statistics
Matches: 276, Mismatches: 41, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
206 1 0.00
207 169 0.61
208 104 0.38
209 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (207 bp):
CTTCCTGATGAGATATAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATACGAATGAGACCT
CAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCAGTCATCTTCCTGA
TGATGTACAGAGAAGTGGACCAAATCCGCCTTCCTGATAAGATACAGAGAAGTGAATTAAATCAA
TGAAGCGATCAT
Found at i:21775484 original size:85 final size:85
Alignment explanation
Indices: 21775340--21775496 Score: 219
Period size: 85 Copynumber: 1.8 Consensus size: 85
21775330 TCAACCCCAT
* **
21775340 CTTCCTGATGAGATATAGAGAAGTGTGTCAAAGCAATAAAGCAGTCATCTTCCCTATGAGATACA
1 CTTCCTGATAAGATATAGAGAAGTGAATCAAAGCAATAAAGCAGTCATCTTCCCTATGAGATACA
21775405 GAGAAGTGGACCAAATCTGC
66 GAGAAGTGGACCAAATCTGC
* * *
21775425 CTTCCTGATAAGATATAGAGAAGTGAATTAAATCAATGAAGC-GATCATCTT-CCTAATGAGATA
1 CTTCCTGATAAGATATAGAGAAGTGAATCAAAGCAATAAAGCAG-TCATCTTCCCT-ATGAGATA
*
21775488 TAGAGAAGT
64 CAGAGAAGT
21775497 AGTACGAATC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
84 4 0.06
85 59 0.94
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (85 bp):
CTTCCTGATAAGATATAGAGAAGTGAATCAAAGCAATAAAGCAGTCATCTTCCCTATGAGATACA
GAGAAGTGGACCAAATCTGC
Found at i:21775507 original size:48 final size:47
Alignment explanation
Indices: 21775425--21775516 Score: 114
Period size: 48 Copynumber: 1.9 Consensus size: 47
21775415 CCAAATCTGC
* * *
21775425 CTTCCTGATAAGATATAGAGAAGTGAATTAAATCAATGAAGCGATCAT
1 CTTCCTAATAAGATATAGAGAAGT-AAGTAAATCAACGAAGCGATCAT
*
21775473 CTTCCTAATGAGATATAGAGAAGT-AGTACGAATCAACGAAGCGA
1 CTTCCTAATAAGATATAGAGAAGTAAGTA--AATCAACGAAGCGA
21775517 AGCTCAAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
46 3 0.08
48 35 0.92
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (47 bp):
CTTCCTAATAAGATATAGAGAAGTAAGTAAATCAACGAAGCGATCAT
Found at i:21775550 original size:367 final size:363
Alignment explanation
Indices: 21774742--21776308 Score: 1075
Period size: 367 Copynumber: 4.3 Consensus size: 363
21774732 CTTCAAAAGG
* * * * ** *
21774742 TCATCTTCCTGATGAAATACAGAGAAGTAGACCAAATCAATAAAGCGAAGCTCAATACGAATGAG
1 TCATCTTCCTAATGAGATATAGAGAAGTAGA-CGAATCAACGAAGCGAAGCTCAAAAC-AATGAG
* * * *
21774807 ACTTCAAACCCCATCTTTCTGATGAGATACAAAGAAGTGGACCAGATCCG---TC-G---AGATA
64 -TTTCAAACCTCATCTTCCTGATGAGATACAAAGAAGTGGACCAAATCCGTTTTCTGATAAGATA
* * *
21774865 CAGAGAAGTGGATTAAATCAATGAAGCGATCATCTTCCTGATGAGATACAAAGAAGTAAACCAAA
128 CAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAA
* * * * *
21774930 TCAATGAAGCGAAGCTCAATACGAATGAGACTTTAAACCCCATCTTTCTGATAAGATATAGAGAA
193 TCAATAAAGCGAAGCTCAATACGAATGAGACCTCAAACCCCATCTTCCTGATAAGATACAGAGAA
* * *
21774995 ATGGGTCAAAACAATAAAGTGGTCATCTTCCTAATGAGATACAGAGAAGTGGACCAAATCTGCCT
258 ATGGGTCAAAGCAATAAAG-CGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCTGCCT
* *
21775060 TCCTGATGAGATATAGAGAAGTAAACCAAATAAATGAAGC--
322 TCCTGATGAGATATAGAGAAGTGAACCAAATCAATGAAGCGA
* * * * * ** ** * * *
21775100 TCAGCTCAATACGAATGAGACT-TCAAACCCCATCTTCCTACTGAGATACAAAGAAGTG-GGC-C
1 TCA--TC-TTCCTAATGAGA-TAT-AGA---GA-AGT-AGAC-GA-AT-CAACGAAGCGAAGCTC
* * ** **
21775162 AAAACAAT-A-----AAGCGGTCATCTTTTTGATGATG-TACAGTGAAGTGGACCAAATCCGTTT
53 AAAACAATGAGTTTCAAAC-CTCATCTTCCTGATGA-GATACAAAGAAGTGGACCAAATCCGTTT
*
21775220 TCCTGATAAGATACAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCTTGATGAGATACAGA
116 T-CTGATAAGATACAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGA
* * * * *
21775285 GAAGTAGACCAAATCAATGAAGCAAATCTTAATACAAATGAGACCTC-AACCCCATCTTCCTGAT
180 GAAGTAGACCAAATCAATAAAGCGAAGCTCAATACGAATGAGACCTCAAACCCCATCTTCCTGAT
* * * *
21775349 GAGATATAGAGAAGTGTGTCAAAGCAATAAAGCAGTCATCTTCCCT-ATGAGATACAGAGAAGTG
245 AAGATACAGAGAAATGGGTCAAAGCAATAAAGC-GTCATCTT-CCTGATGAGATACAGAGAAGTG
* **
21775413 GACCAAATCTGCCTTCCTGATAAGATATAGAGAAGTGAATTAAATCAATGAAGCGA
308 GACCAAATCTGCCTTCCTGATGAGATATAGAGAAGTGAACCAAATCAATGAAGCGA
21775469 TCATCTTCCTAATGAGATATAGAGAAGTAGTACGAATCAACGAAGCGAAGCTCAAAACGAATGAG
1 TCATCTTCCTAATGAGATATAGAGAAGTAG-ACGAATCAACGAAGCGAAGCTCAAAAC-AATGAG
* **
21775534 TTTCCAAACCTCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGTAATAAAGTGACCGTCTT
64 TTT-CAAACCTCATCTTCCTGATGAGATACAAAGAAGT--G-----G-ACCAAA-T--CCGT-TT
* * * * ** * * *
21775599 CCTGATAAGATACAAAAAAGT-G----AACCAA--ATTC-G-C--CTTCCTGCTGCGATATAGAG
116 TCTGATAAGATACAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGAG
* * * *
21775653 AAGTAGACCAAATCAACAAAGCGAAGCTTAATACGAATGAGA-CTCCAAACCCTATCTTTCTGAT
181 AAGTAGACCAAATCAATAAAGCGAAGCTCAATACGAATGAGACCT-CAAACCCCATCTTCCTGAT
* * * *
21775717 GAGATACAGAGAAATGGGTCAAAGCAATAAAGCGGCTATCTTTCTGATGAGATATAGAGAAGTGG
245 AAGATACAGAGAAATGGGTCAAAGCAATAAAGCGTC-ATCTTCCTGATGAGATACAGAGAAGTGG
* *
21775782 ACCAAATCTGCCTTCTTGATGAGATATAGAGAAGT-AGACCAAATCAATGAAGTGA
309 ACCAAATCTGCCTTCCTGATGAGATATAGAGAAGTGA-ACCAAATCAATGAAGCGA
* * * ** * ** ** * * * *
21775837 --AGC-T--GAAT-ACGA-AT-TAGACTTCGAACCCCATCTTCCTAA-TG-AGATACAAAA-AGT
1 TCATCTTCCTAATGA-GATATAGAGAAGTAG-A-CGAATC-AACGAAGCGAAGCT-CAAAACAAT
* ** ** * * *
21775891 GGGTCAAAGCATTAAAGTGGCCATCTTCCTGTTGAAATACAAAGAAGTGGACCAAATCCATCTTT
61 GAGT---TTCA--AACCT---CATCTTCCTGATGAGATACAAAGAAGTGGACCAAATCCGT-TTT
* * * * * * * *
21775956 TTGATGAGGTATAGAGAAGTGGATTAAATCAATGAAGTGGTCACCTTCTTGATGAGATATAGAGA
117 CTGATAAGATACAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGAGA
* * * *
21776021 AGTAGACCAAATCAATAAAGTGAAGCTCAATACGAATGAGACTTCAAACCTCATCTTCCTAATAA
182 AGTAGACCAAATCAATAAAGCGAAGCTCAATACGAATGAGACCTCAAACCCCATCTTCCTGATAA
* * ** * *
21776086 GGTACAAAGAAGCGGGTCAAAGCAATAAAGCTTCCATCTTCCTGATAAGATACAGAGAAGTGGAC
247 GATACAGAGAAATGGGTCAAAGCAATAAAGCGT-CATCTTCCTGATGAGATACAGAGAAGTGGAC
* * * * *
21776151 CAAATCTGTCTTCCTGATGAGATACAGAGAAGTGGATCAAATCAATGAAGAGA
311 CAAATCTGCCTTCCTGATGAGATATAGAGAAGTGAACCAAATCAATGAAGCGA
* * * * * **
21776204 TCATCTTCTTGATGAGATACATAGAAGTAGACGAAATCAATGAAGCGAAGCTCAATATGAATAAG
1 TCATCTTCCTAATGAGATATAGAGAAGTAGACG-AATCAACGAAGCGAAGCTCAA-AACAAT--G
* * * * *
21776269 ACTAT-AAACCTCATTTTCCTGATGAGATATAGAGAAGTGG
62 AGTTTCAAACCTCATCTTCCTGATGAGATACAAAGAAGTGG
21776309 TTCAAAGCAA
Statistics
Matches: 927, Mismatches: 184, Indels: 186
0.71 0.14 0.14
Matches are distributed among these distances:
356 20 0.02
357 1 0.00
358 12 0.01
359 11 0.01
360 49 0.05
361 28 0.03
362 20 0.02
363 10 0.01
364 5 0.01
365 9 0.01
366 20 0.02
367 406 0.44
368 246 0.27
369 14 0.02
370 2 0.00
371 5 0.01
372 7 0.01
373 16 0.02
374 12 0.01
375 6 0.01
376 1 0.00
377 3 0.00
378 22 0.02
379 2 0.00
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (363 bp):
TCATCTTCCTAATGAGATATAGAGAAGTAGACGAATCAACGAAGCGAAGCTCAAAACAATGAGTT
TCAAACCTCATCTTCCTGATGAGATACAAAGAAGTGGACCAAATCCGTTTTCTGATAAGATACAG
AGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCA
ATAAAGCGAAGCTCAATACGAATGAGACCTCAAACCCCATCTTCCTGATAAGATACAGAGAAATG
GGTCAAAGCAATAAAGCGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCTGCCTTCCT
GATGAGATATAGAGAAGTGAACCAAATCAATGAAGCGA
Found at i:21775650 original size:208 final size:207
Alignment explanation
Indices: 21775058--21775656 Score: 566
Period size: 207 Copynumber: 2.9 Consensus size: 207
21775048 CCAAATCTGC
* * * * * ** * * *
21775058 CTTCCTGATGAGATATAGAGAAGTAAACCAAATAAATGAAGCTCAGCTCAATACGAATGAGACTT
1 CTTCCTAATGAGATACAGAGAAGTAGACCAAATCAACGAAGCAAAGCTCAAAACAAATGAGACCT
* * * * * **
21775123 CAAACCCCATCTTCCT-ACTGAGATACAAAGAAGTGGGCCAAAACAATAAAGCGGTCATCTT-TT
66 -AAACCCCATCTTCCTGA-TGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCAGCCATCTTCCC
* *** * * ** * *
21775186 TGATGATG-TACAGTGAAGTGGACCAAATCCGTTTTCCTGATAAGATACAGAGAAGTGGATTAAA
129 T-AT-AAGATACAAAAAAGTGAACCAAATCTGCCTTCCTGATAAGATATAGAGAAGTGAATTAAA
*
21775250 TCAATGAAGCGGTCAT
192 TCAATGAAGCGATCAT
* * * * * *
21775266 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAATCTTAATACAAATGAGACCT
1 CTTCCTAATGAGATACAGAGAAGTAGACCAAATCAACGAAGCAAAGCTCAAAACAAATGAGACCT
* * * *
21775331 CAACCCCATCTTCCTGATGAGATATAGAGAAGTGTGTCAAAGCAATAAAGCAGTCATCTTCCCTA
66 AAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCAGCCATCTTCCCTA
* * * *
21775396 TGAGATACAGAGAAGTGGACCAAATCTGCCTTCCTGATAAGATATAGAGAAGTGAATTAAATCAA
131 TAAGATACAAAAAAGTGAACCAAATCTGCCTTCCTGATAAGATATAGAGAAGTGAATTAAATCAA
21775461 TGAAGCGATCAT
196 TGAAGCGATCAT
* * * * *
21775473 CTTCCTAATGAGATATAGAGAAGTAGTA-CGAATCAACGAAGCGAAGCTCAAAACGAATGAGTTT
1 CTTCCTAATGAGATACAGAGAAGTAG-ACCAAATCAACGAAGCAAAGCTCAAAACAAATGAG--A
* * * *
21775537 CC-AAACCTCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGTAATAAAG-TGACCGTCTT-
63 CCTAAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCAG-CCATCTTC
* **
21775599 CCTGATAAGATACAAAAAAGTGAACCAAAT-TCGCCTTCCTGCTGCGATATAGAGAAGT
127 CCT-ATAAGATACAAAAAAGTGAACCAAATCT-GCCTTCCTGATAAGATATAGAGAAGT
21775657 AGACCAAATC
Statistics
Matches: 328, Mismatches: 54, Indels: 18
0.82 0.14 0.05
Matches are distributed among these distances:
206 1 0.00
207 172 0.52
208 153 0.47
209 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.24
Consensus pattern (207 bp):
CTTCCTAATGAGATACAGAGAAGTAGACCAAATCAACGAAGCAAAGCTCAAAACAAATGAGACCT
AAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCAGCCATCTTCCCTA
TAAGATACAAAAAAGTGAACCAAATCTGCCTTCCTGATAAGATATAGAGAAGTGAATTAAATCAA
TGAAGCGATCAT
Found at i:21775985 original size:159 final size:160
Alignment explanation
Indices: 21775480--21775994 Score: 579
Period size: 160 Copynumber: 3.2 Consensus size: 160
21775470 CATCTTCCTA
* * * * * **
21775480 ATGAGATATAGAGAAGTAGTA-CGAATCAACGAAGCGAAGCTCAAAACGAATGAGTTTCCAAACC
1 ATGAGATATAGAGAAGTAG-ACCAAATCAATGAAGTGAAGCTGAATACGAATGAGACTCCAAACC
* * * * *
21775544 TCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGTAATAAAGTGACCGTCTTCCTGAT-AAG
65 CCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGCCATCTTCCTGATGAA-
* * * *
21775608 ATACAAAAAAGTGAACCAAATTCGCCTTCCTG
129 ATACAAAGAAGTGGACCAAATCCGCCTTCTTG
* * ** * *
21775640 CTGCGATATAGAGAAGTAGACCAAATCAACAAAGCGAAGCTTAATACGAATGAGACTCCAAACCC
1 ATGAGATATAGAGAAGTAGACCAAATCAATGAAGTGAAGCTGAATACGAATGAGACTCCAAACCC
* * * * * *
21775705 TATCTTTCTGATGAGATACAGAGAAA-TGGGTCAAAGCAATAAAGCGGCTATCTTTCTGATGAGA
66 CATCTTCCTGATGAGATACAGA-AAAGTGGGTCAAAGCAATAAAGTGGCCATCTTCCTGATGAAA
* * *
21775769 TATAGAGAAGTGGACCAAATCTGCCTTCTTG
130 TACAAAGAAGTGGACCAAATCCGCCTTCTTG
* * *
21775800 ATGAGATATAGAGAAGTAGACCAAATCAATGAAGTGAAGCTGAATACGAATTAGACTTCGAACCC
1 ATGAGATATAGAGAAGTAGACCAAATCAATGAAGTGAAGCTGAATACGAATGAGACTCCAAACCC
* * *
21775865 CATCTTCCTAATGAGATACA-AAAAGTGGGTCAAAGCATTAAAGTGGCCATCTTCCTGTTGAAAT
66 CATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGCCATCTTCCTGATGAAAT
** *
21775929 ACAAAGAAGTGGACCAAATCCATCTTTTTG
131 ACAAAGAAGTGGACCAAATCCGCCTTCTTG
* * **
21775959 ATGAGGTATAGAGAAGTGGATTAAATCAATGAAGTG
1 ATGAGATATAGAGAAGTAGACCAAATCAATGAAGTG
21775995 GTCACCTTCT
Statistics
Matches: 297, Mismatches: 54, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
158 3 0.01
159 91 0.31
160 200 0.67
161 3 0.01
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.23
Consensus pattern (160 bp):
ATGAGATATAGAGAAGTAGACCAAATCAATGAAGTGAAGCTGAATACGAATGAGACTCCAAACCC
CATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGCCATCTTCCTGATGAAAT
ACAAAGAAGTGGACCAAATCCGCCTTCTTG
Found at i:21776174 original size:37 final size:37
Alignment explanation
Indices: 21776122--21776193 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
21776112 AAAGCTTCCA
21776122 TCTTCCTGATAAGATACAGAGAAGTGGACCAAATCTG
1 TCTTCCTGATAAGATACAGAGAAGTGGACCAAATCTG
* *
21776159 TCTTCCTGATGAGATACAGAGAAGTGGATCAAATC
1 TCTTCCTGATAAGATACAGAGAAGTGGACCAAATC
21776194 AATGAAGAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (37 bp):
TCTTCCTGATAAGATACAGAGAAGTGGACCAAATCTG
Found at i:21776214 original size:208 final size:207
Alignment explanation
Indices: 21775793--21776516 Score: 891
Period size: 208 Copynumber: 3.5 Consensus size: 207
21775783 CCAAATCTGC
* * * *
21775793 CTTCTTGATGAGATATAGAGAAGTAGACCAAATCAATGAAGTGAAGCTGAATACGAATTAGACTT
1 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTT
* * *
21775858 CGAACCCCATCTTCCTAATGAGATACAAA-AAGTGGGTCAAAGCATTAAAGTGGCCATCTTCCTG
66 CAAACCCCATCTTCCTAATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGTGTCCATCTTCCTG
* * * ** * *
21775922 TTGAA-ATACAAAGAAGTGGACCAAATCCATCTTTTTGATGAGGTATAGAGAAGTGGATTAAATC
131 AT-AAGATACAGAGAAGTGGACCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGATTAAATC
* *
21775986 AATGAAGTGGTCAC
195 AATGAAG-AGTCAT
* * *
21776000 CTTCTTGATGAGATATAGAGAAGTAGACCAAATCAATAAAGTGAAGCTCAATACGAATGAGACTT
1 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTT
* * * *
21776065 CAAACCTCATCTTCCTAATAAGGTACAAAGAAGCGGGTCAAAGCAATAAAGCT-TCCATCTTCCT
66 CAAACCCCATCTTCCTAATGAGATACAAAGAAGTGGGTCAAAGCAATAAAG-TGTCCATCTTCCT
* *
21776129 GATAAGATACAGAGAAGTGGACCAAATCTGTCTTCCTGATGAGATACAGAGAAGTGGATCAAATC
130 GATAAGATACAGAGAAGTGGACCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGATTAAATC
21776194 AATGAAGAGATCAT
195 AATGAAGAG-TCAT
* * * *
21776208 CTTCTTGATGAGATACATAGAAGTAGACGAAATCAATGAAGCGAAGCTCAATATGAATAAGACTA
1 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACT-
* * * * * * **
21776273 T-AAACCTCATTTTCCTGATGAGATATAGAGAAGTGGTTCAAAGCAATAAAGTGGT-CATCTTTT
65 TCAAACCCCATCTTCCTAATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGT-GTCCATCTTCC
* * * * *
21776336 TGATGAGATACAGAGAAGTAGACCAAATCTACCTTCCTAATGAGATACAGAGAAGTGTATTAAAT
129 TGATAAGATACAGAGAAGTGGACCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGATTAAAT
21776401 CAATGAAGCAGTCAT
194 CAATGAAG-AGTCAT
* * * * *
21776416 CTTCCTGATGAGATACAGAGAAGTAGACGAAATCAACGAAGCGAAGCTTAATACGAATGAGATTT
1 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTT
* * * *
21776481 TAAACCCCATATTCCTGATGAGATACAGAGAAGTGG
66 CAAACCCCATCTTCCTAATGAGATACAAAGAAGTGG
21776517 ACCAAATCCA
Statistics
Matches: 453, Mismatches: 55, Indels: 17
0.86 0.10 0.03
Matches are distributed among these distances:
207 92 0.20
208 356 0.79
209 5 0.01
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.25
Consensus pattern (207 bp):
CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTT
CAAACCCCATCTTCCTAATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGTGTCCATCTTCCTG
ATAAGATACAGAGAAGTGGACCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGATTAAATCA
ATGAAGAGTCAT
Found at i:21776308 original size:735 final size:735
Alignment explanation
Indices: 21774898--21776391 Score: 1980
Period size: 735 Copynumber: 2.0 Consensus size: 735
21774888 AAGCGATCAT
** *
21774898 CTTCCTGATGAGATACAAAGAAGTAAACCAAATCAATGAAGCGAAGCTCAATACGAATGAGACTT
1 CTTCCTGATGAGATACAAAGAAGTAAACCAAATCAACAAAGCGAAGCTCAATACGAATGAGACTC
* * *
21774963 TAAACCCCATCTTTCTGATAAGATATAGAGAAATGGGTCAAAACAATAAAGTGGTCATCTTCCTA
66 CAAACCCCATCTTTCTGATAAGATACAGAGAAATGGGTCAAAACAATAAAGCGGTCATCTTCCTA
21775028 ATGAGATACAGAGAAGTGGACCAAATCTGCCTTCCTGATGAGATATAGAGAAGTAAACCAAATAA
131 ATGAGATACAGAGAAGTGGACCAAATCTGCCTTCCTGATGAGATATAGAGAAGTAAACCAAATAA
* *
21775093 ATGAAGCTCAGCTCAATACGAATGAGACTTCAAACCCCATCTTCCTACTGAGATACAAAGAAGTG
196 ATGAAGCTAAGCTCAATACGAATGAGACTTCAAACCCCATCTTCCTAATGAGATACAAAGAAGTG
* ** ** ** *
21775158 GGCCAAAACAATAAAGCGGTCATCTTTTTGATGATGTACAGTGAAGTGGACCAAATCCGTTTTCC
261 GGCCAAAACAATAAAGCGGCCATCTTCCTGATGAAATACAAAGAAGTGGACCAAATCCATTTTCC
*
21775223 TGATAAGATACAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCTTGATGAGATACAGAGAA
326 TGATAAGATACAGAGAAGTGGATTAAATCAATGAAGCGGTCACCTTCTTGATGAGATACAGAGAA
* * * * *
21775288 GTAGACCAAATCAATGAAGCAAATCTTAATACAAATGAGACCTCAACCCCATCTTCCTGATGAGA
391 GTAGACCAAATCAATAAAGCAAAGCTCAATACAAATGAGACCTCAACCCCATCTTCCTAATAAGA
* * * * *
21775353 TATAGAGAAGTGTGTCAAAGCAATAAAGCAGTCATCTTCCCTATGAGATACAGAGAAGTGGACCA
456 TACAAAGAAGCGGGTCAAAGCAATAAAGCAGTCATCTTCCCTATAAGATACAGAGAAGTGGACCA
* * *
21775418 AATCTGCCTTCCTGATAAGATATAGAGAAGTGAATTAAATCAATGAAGCGATCATCTTCCTAATG
521 AATCTGCCTTCCTGATAAGATACAGAGAAGTGAATCAAATCAATGAAGAGATCATCTTCCTAATG
* * ** *
21775483 AGATATAGAGAAGTAGTACGAATCAACGAAGCGAAGCTCAAAACGAATGAGTTTCCAAACCTCAT
586 AGATACAGAGAAGTAGTACGAATCAACGAAGCGAAGCTCAAAACGAATAAGACTACAAACCTCAT
*
21775548 CTTCCTGATGAGATACAGAGAAGTGGGTCAAAGTAATAAAGTGACCGTCTTCCTGATAAGATACA
651 CTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGACCGTCTTCCTGATAAGATACA
21775613 AAAAAGTGAACCAAATTCGC
716 AAAAAGTGAACCAAATTCGC
* * * * * *
21775633 CTTCCTGCTGCGATATAGAGAAGTAGACCAAATCAACAAAGCGAAGCTTAATACGAATGAGACTC
1 CTTCCTGATGAGATACAAAGAAGTAAACCAAATCAACAAAGCGAAGCTCAATACGAATGAGACTC
* * * *
21775698 CAAACCCTATCTTTCTGATGAGATACAGAGAAATGGGTCAAAGCAATAAAGCGG-CTATCTTTCT
66 CAAACCCCATCTTTCTGATAAGATACAGAGAAATGGGTCAAAACAATAAAGCGGTC-ATCTTCCT
* * * * *
21775762 GATGAGATATAGAGAAGTGGACCAAATCTGCCTTCTTGATGAGATATAGAGAAGTAGACCAAATC
130 AATGAGATACAGAGAAGTGGACCAAATCTGCCTTCCTGATGAGATATAGAGAAGTAAACCAAATA
* * *
21775827 AATGAAG-TGAAGCTGAATACGAATTAGACTTCGAACCCCATCTTCCTAATGAGATACAAA-AAG
195 AATGAAGCT-AAGCTCAATACGAATGAGACTTCAAACCCCATCTTCCTAATGAGATACAAAGAAG
* * * * *
21775890 TGGGTCAAAGCATTAAAGTGGCCATCTTCCTGTTGAAATACAAAGAAGTGGACCAAATCCATCTT
259 TGGGCCAAAACAATAAAGCGGCCATCTTCCTGATGAAATACAAAGAAGTGGACCAAATCCAT-TT
* * * * * *
21775955 T-TTGATGAGGTATAGAGAAGTGGATTAAATCAATGAAGTGGTCACCTTCTTGATGAGATATAGA
323 TCCTGATAAGATACAGAGAAGTGGATTAAATCAATGAAGCGGTCACCTTCTTGATGAGATACAGA
** * * *
21776019 GAAGTAGACCAAATCAATAAAGTGAAGCTCAATACGAATGAGACTTCAAACCTCATCTTCCTAAT
388 GAAGTAGACCAAATCAATAAAGCAAAGCTCAATACAAATGAGACCTC-AACCCCATCTTCCTAAT
* *
21776084 AAGGTACAAAGAAGCGGGTCAAAGCAATAAAGC-TTCCATCTT-CCTGATAAGATACAGAGAAGT
452 AAGATACAAAGAAGCGGGTCAAAGCAATAAAGCAGT-CATCTTCCCT-ATAAGATACAGAGAAGT
* * *
21776147 GGACCAAATCTGTCTTCCTGATGAGATACAGAGAAGTGGATCAAATCAATGAAGAGATCATCTTC
515 GGACCAAATCTGCCTTCCTGATAAGATACAGAGAAGTGAATCAAATCAATGAAGAGATCATCTTC
* * * * * * *
21776212 TTGATGAGATACATAGAAGTAG-ACGAAATCAATGAAGCGAAGCTCAATATGAATAAGACTATAA
580 CTAATGAGATACAGAGAAGTAGTACG-AATCAACGAAGCGAAGCTCAAAACGAATAAGACTACAA
* * * ** * ** *
21776276 ACCTCATTTTCCTGATGAGATATAGAGAAGTGGTTCAAAGCAATAAAGTGGTCATCTTTTTGATG
644 ACCTCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGACCGTCTTCCTGATA
* * *
21776341 AGATACAGAGAAGT-AGACCAAA-TCTAC
709 AGATACAAAAAAGTGA-ACCAAATTC-GC
* *
21776368 CTTCCTAATGAGATACAGAGAAGT
1 CTTCCTGATGAGATACAAAGAAGT
21776392 GTATTAAATC
Statistics
Matches: 652, Mismatches: 98, Indels: 18
0.85 0.13 0.02
Matches are distributed among these distances:
734 160 0.25
735 492 0.75
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.24
Consensus pattern (735 bp):
CTTCCTGATGAGATACAAAGAAGTAAACCAAATCAACAAAGCGAAGCTCAATACGAATGAGACTC
CAAACCCCATCTTTCTGATAAGATACAGAGAAATGGGTCAAAACAATAAAGCGGTCATCTTCCTA
ATGAGATACAGAGAAGTGGACCAAATCTGCCTTCCTGATGAGATATAGAGAAGTAAACCAAATAA
ATGAAGCTAAGCTCAATACGAATGAGACTTCAAACCCCATCTTCCTAATGAGATACAAAGAAGTG
GGCCAAAACAATAAAGCGGCCATCTTCCTGATGAAATACAAAGAAGTGGACCAAATCCATTTTCC
TGATAAGATACAGAGAAGTGGATTAAATCAATGAAGCGGTCACCTTCTTGATGAGATACAGAGAA
GTAGACCAAATCAATAAAGCAAAGCTCAATACAAATGAGACCTCAACCCCATCTTCCTAATAAGA
TACAAAGAAGCGGGTCAAAGCAATAAAGCAGTCATCTTCCCTATAAGATACAGAGAAGTGGACCA
AATCTGCCTTCCTGATAAGATACAGAGAAGTGAATCAAATCAATGAAGAGATCATCTTCCTAATG
AGATACAGAGAAGTAGTACGAATCAACGAAGCGAAGCTCAAAACGAATAAGACTACAAACCTCAT
CTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGACCGTCTTCCTGATAAGATACA
AAAAAGTGAACCAAATTCGC
Found at i:21776427 original size:85 final size:84
Alignment explanation
Indices: 21776284--21776611 Score: 257
Period size: 85 Copynumber: 4.0 Consensus size: 84
21776274 AAACCTCATT
* * * * * **
21776284 TTCCTGATGAGATATAGAGAAGTGGT-TCAAAGCAATAAAGTGGTCATCTTTTTGATGAGATACA
1 TTCCTAATGAGATACAGAGAAGT-GTATTAAATCAAT-AAGCGGTCATCTTCCTGATGAGATACA
*
21776348 GAGAAGTAGACCAAATCTACC
64 GAGAAGTAGACCAAATCAACC
*
21776369 TTCCTAATGAGATACAGAGAAGTGTATTAAATCAATGAAGCAGTCATCTTCCTGATGAGATACAG
1 TTCCTAATGAGATACAGAGAAGTGTATTAAATCAAT-AAGCGGTCATCTTCCTGATGAGATACAG
* *
21776434 AGAAGTAGACGAAATCAACG
65 AGAAGTAGACCAAATCAACC
*** * * * * * ** *
21776454 AAGCGAAGCTTA-ATAC-GA-ATGAG-ATT---T---TAAAC-CCCATATTCCTGATGAGATACA
1 TTCCTAA--TGAGATACAGAGAAGTGTATTAAATCAATAAGCGGTCATCTTCCTGATGAGATACA
* * *
21776508 GAGAAGTGGACCAAATCCATC
64 GAGAAGTAGACCAAATCAACC
* * * *
21776529 TTCTTGATAAGATACAGAGAAGTGGATTAAATCAATTAAGCGGTCATCTTCCTGATGAGATACAG
1 TTCCTAATGAGATACAGAGAAGTGTATTAAATCAA-TAAGCGGTCATCTTCCTGATGAGATACAG
21776594 AGAAGTAGACCAAATCAA
65 AGAAGTAGACCAAATCAA
21776612 TGAAGCAAAG
Statistics
Matches: 185, Mismatches: 43, Indels: 30
0.72 0.17 0.12
Matches are distributed among these distances:
73 2 0.01
74 4 0.02
75 38 0.21
76 6 0.03
77 4 0.02
80 2 0.01
83 3 0.02
84 9 0.05
85 111 0.60
86 4 0.02
87 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.25
Consensus pattern (84 bp):
TTCCTAATGAGATACAGAGAAGTGTATTAAATCAATAAGCGGTCATCTTCCTGATGAGATACAGA
GAAGTAGACCAAATCAACC
Found at i:21776510 original size:160 final size:161
Alignment explanation
Indices: 21776336--21776675 Score: 484
Period size: 160 Copynumber: 2.1 Consensus size: 161
21776326 GTCATCTTTT
* * *
21776336 TGATGAGATACAGAGAAGTAGACCAAATCTACCTTCCTAATGAGATACAGAGAAGTGTATTAAAT
1 TGATGAGATACAGAGAAGTAGACCAAATCCACCTTCCTAATAAGATACAGAGAAGTGGATTAAAT
* * *
21776401 CAATGAAGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACGAAATCAACGAAGCGAAGCTTA
66 CAATGAAGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACGAAGCAAAGCTCA
* * *
21776466 ATACGAATGAGATTTTAAA-CCCCATATTCC
131 ATACGAATGAAACTTCAAACCCCCATATTCC
* * * *
21776496 TGATGAGATACAGAGAAGTGGACCAAATCCATCTTCTTGATAAGATACAGAGAAGTGGATTAAAT
1 TGATGAGATACAGAGAAGTAGACCAAATCCACCTTCCTAATAAGATACAGAGAAGTGGATTAAAT
* * *
21776561 CAATTAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCA
66 CAATGAAGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACGAAGCAAAGCTCA
** * *
21776626 ATGTGAGTGAAACTTCAAACCCCCATCTTCC
131 ATACGAATGAAACTTCAAACCCCCATATTCC
*
21776657 TGATGAGATACAAAGAAGT
1 TGATGAGATACAGAGAAGT
21776676 GGGTCAAAGA
Statistics
Matches: 158, Mismatches: 21, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
160 130 0.82
161 28 0.18
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (161 bp):
TGATGAGATACAGAGAAGTAGACCAAATCCACCTTCCTAATAAGATACAGAGAAGTGGATTAAAT
CAATGAAGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACGAAGCAAAGCTCA
ATACGAATGAAACTTCAAACCCCCATATTCC
Found at i:21776581 original size:416 final size:409
Alignment explanation
Indices: 21775793--21776616 Score: 940
Period size: 416 Copynumber: 2.0 Consensus size: 409
21775783 CCAAATCTGC
* * * *
21775793 CTTCTTGATGAGATATAGAGAAGTAGACCAAATCAATGAAGTGAAGCTGAATACGAATTAGACTT
1 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATAAGACTT
* * *
21775858 CGAACCCCATCTTCCTAATGAGATACAAAAAGTGGGTCAAAGCATTAAAGTGGCCATCTTCCTGT
66 CAAACCCCATCTTCCTAATGAGATACAAAAAGTGGGTCAAAGCAATAAAGTGGCCATCTTCCTGA
* * ** * * *
21775923 TGAAATACAAAGAAGTGGACCAAATCCATCTTTTTGATGAGGTATAGAGAAGTGGATTAAATCAA
131 TGAAATACAAAGAAGTAGACCAAATCCACCTTCCTAATGAGATACAGAGAAGTGGATTAAATCAA
** * * * *
21775988 TGAAGTGGTCACCTTCTTGATGAGATATAGAGAAGTAGACCAAATCAATAAAGTGAAGCTCAATA
196 TGAAGCAGTCACCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACAAAGCGAAGCTCAATA
* * * *
21776053 CGAATGAGACTTCAAACCTCATCTTCCTAATAAGGTACAAAGAAGCGGGTCAAAGCAATAAAGCT
261 CGAATGAGACTTCAAACCCCATATTCCTAATAAGATACAAAGAAGCGGG---AAGC-ACAAA-C-
21776118 TCCATCTTCCTGATAAGATACAGAGAAGTGGACCAAATCTGTCTTCCTGATGAGATACAGAGAAG
320 TCCATCTTCCTGATAAGATACAGAGAAGTGGACCAAATCTGTCTTCCTGATGAGATACAGAGAAG
* *
21776183 TGGATCAAATCAATGAAGAGATCAT
385 TAGACCAAATCAATGAAGAGATCAT
* * *
21776208 CTTCTTGATGAGATACATAGAAGTAGACGAAATCAATGAAGCGAAGCTCAATATGAATAAGACTA
1 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATAAGACT-
* * * * * * * **
21776273 T-AAACCTCATTTTCCTGATGAGATATAGAGAAGTGGTTCAAAGCAATAAAGTGGTCATCTTTTT
65 TCAAACCCCATCTTCCTAATGAGATACA-AAAAGTGGGTCAAAGCAATAAAGTGGCCATCTTCCT
* * * *
21776337 GATGAGATACAGAGAAGTAGACCAAATCTACCTTCCTAATGAGATACAGAGAAGTGTATTAAATC
129 GATGAAATACAAAGAAGTAGACCAAATCCACCTTCCTAATGAGATACAGAGAAGTGGATTAAATC
* * * *
21776402 AATGAAGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACGAAATCAACGAAGCGAAGCTTAA
194 AATGAAGCAGTCACCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACAAAGCGAAGCTCAA
* * * * * *
21776467 TACGAATGAGATTTTAAACCCCATATTCCTGATGAGATACAGAGAAG-TGG-A-C-CAAA-TCCA
259 TACGAATGAGACTTCAAACCCCATATTCCTAATAAGATACAAAGAAGCGGGAAGCACAAACTCCA
* **
21776527 TCTTCTTGATAAGATACAGAGAAGTGGATTAAATCAATTAAGCGGTCATCTTCCTGATGAGATAC
324 TCTTCCTGATAAGATACAGAGAAGTGGACCAAATC---T-----G---TCTTCCTGATGAGATAC
21776592 AGAGAAGTAGACCAAATCAATGAAG
378 AGAGAAGTAGACCAAATCAATGAAG
21776617 CAAAGCTCAA
Statistics
Matches: 341, Mismatches: 55, Indels: 25
0.81 0.13 0.06
Matches are distributed among these distances:
405 36 0.11
408 4 0.01
410 1 0.00
411 1 0.00
413 1 0.00
415 80 0.23
416 218 0.64
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (409 bp):
CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATACGAATAAGACTT
CAAACCCCATCTTCCTAATGAGATACAAAAAGTGGGTCAAAGCAATAAAGTGGCCATCTTCCTGA
TGAAATACAAAGAAGTAGACCAAATCCACCTTCCTAATGAGATACAGAGAAGTGGATTAAATCAA
TGAAGCAGTCACCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACAAAGCGAAGCTCAATA
CGAATGAGACTTCAAACCCCATATTCCTAATAAGATACAAAGAAGCGGGAAGCACAAACTCCATC
TTCCTGATAAGATACAGAGAAGTGGACCAAATCTGTCTTCCTGATGAGATACAGAGAAGTAGACC
AAATCAATGAAGAGATCAT
Found at i:21776596 original size:48 final size:48
Alignment explanation
Indices: 21776525--21776617 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
21776515 GGACCAAATC
* * ** *
21776525 CATCTTCTTGATAAGATACAGAGAAGTGGATTAAATCAATTAAGCGGT
1 CATCTTCCTGATAAGATACAGAGAAGTAGACCAAATCAATGAAGCGGT
*
21776573 CATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGC
1 CATCTTCCTGATAAGATACAGAGAAGTAGACCAAATCAATGAAGC
21776618 AAAGCTCAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (48 bp):
CATCTTCCTGATAAGATACAGAGAAGTAGACCAAATCAATGAAGCGGT
Found at i:21778834 original size:30 final size:30
Alignment explanation
Indices: 21778792--21778930 Score: 156
Period size: 30 Copynumber: 4.6 Consensus size: 30
21778782 ATTTTATCTA
* *
21778792 AAAATCACATTTTGACCCCTAAACTTTTCT
1 AAAATTACATTTTGACCCCTAAACTTTTCC
* *
21778822 AAAATTAGATTTTGACTTCC-AAAC-TTTCTC
1 AAAATTACATTTTGAC-CCCTAAACTTTTC-C
* *
21778852 AAAATCACATTTTGACCCTTAAACTTTTCC
1 AAAATTACATTTTGACCCCTAAACTTTTCC
** *
21778882 AAAATTGTATTTTGACCCCTAAACTTATCC
1 AAAATTACATTTTGACCCCTAAACTTTTCC
*
21778912 AAAATTACATTTTAACCCC
1 AAAATTACATTTTGACCCC
21778931 AAATGCTTTG
Statistics
Matches: 89, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
29 5 0.06
30 78 0.88
31 6 0.07
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCTAAACTTTTCC
Found at i:21778886 original size:60 final size:60
Alignment explanation
Indices: 21778792--21778930 Score: 185
Period size: 60 Copynumber: 2.3 Consensus size: 60
21778782 ATTTTATCTA
* *
21778792 AAAATCACATTTTGACCCCTAAACTTTTCTAAAATTAG-ATTTTGACTTCC-AAACTT-TCTC
1 AAAATCACATTTTGACCCCTAAACTTTTCCAAAATT-GTATTTTGAC-CCCTAAACTTATC-C
*
21778852 AAAATCACATTTTGACCCTTAAACTTTTCCAAAATTGTATTTTGACCCCTAAACTTATCC
1 AAAATCACATTTTGACCCCTAAACTTTTCCAAAATTGTATTTTGACCCCTAAACTTATCC
* *
21778912 AAAATTACATTTTAACCCC
1 AAAATCACATTTTGACCCC
21778931 AAATGCTTTG
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
59 3 0.04
60 65 0.93
61 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (60 bp):
AAAATCACATTTTGACCCCTAAACTTTTCCAAAATTGTATTTTGACCCCTAAACTTATCC
Found at i:21779116 original size:169 final size:171
Alignment explanation
Indices: 21778896--21779232 Score: 590
Period size: 170 Copynumber: 2.0 Consensus size: 171
21778886 TTGTATTTTG
* * *
21778896 ACCCCTAAACTTATCCAAAATTACATTTTAACCCCAAATGCTTTGAAACTTCATTTTTCGA-CCC
1 ACCCCTAAACTTATCCAAAATTACATTTTAACCCCAAATCCTCTAAAACTTCATTTTTCGACCCC
*
21778960 TTTTTT-TTCTTTTTCTTCGATTCTTTGTACATAAAATTAAACTATTTTTTTCGTATTTTAAATT
66 TTTTTTATT-TTTTTCTTCGATTCTTTGTACATAAAATTAAACTATTTTCTTCGTATTTTAAATT
21779024 AATACTGTCATTTTCTCATAATCTTGATTTGCATTTTTTGTA
130 AATACTGTCATTTTCTCATAATCTTGATTTGCATTTTTTGTA
*
21779066 ACCCCTAAACTTTTCC-AAATTACATTTTAACCCCAAATCCTCTAAAACTTCATTTTTCGACCCC
1 ACCCCTAAACTTATCCAAAATTACATTTTAACCCCAAATCCTCTAAAACTTCATTTTTCGACCCC
21779130 TTTTTTATTTTTTTCTTCGATTCTTTGTACATAAAATTAAACTATTTTCTTCGTATTTTAAATTA
66 TTTTTTATTTTTTTCTTCGATTCTTTGTACATAAAATTAAACTATTTTCTTCGTATTTTAAATTA
*
21779195 ATACTGTCATTTTCTCATAATCTTGATTTGCGTTTTTT
131 ATACTGTCATTTTCTCATAATCTTGATTTGCATTTTTT
21779233 TGTATTTCTT
Statistics
Matches: 159, Mismatches: 6, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
169 41 0.26
170 116 0.73
171 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.05, T:0.48
Consensus pattern (171 bp):
ACCCCTAAACTTATCCAAAATTACATTTTAACCCCAAATCCTCTAAAACTTCATTTTTCGACCCC
TTTTTTATTTTTTTCTTCGATTCTTTGTACATAAAATTAAACTATTTTCTTCGTATTTTAAATTA
ATACTGTCATTTTCTCATAATCTTGATTTGCATTTTTTGTA
Found at i:21784167 original size:18 final size:18
Alignment explanation
Indices: 21784140--21784191 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
21784130 CATTTCCATC
*
21784140 AATGTGAACATCATTTTA
1 AATGTGAACATCATTTAA
*
21784158 AATTTGAACATCATTTAA
1 AATGTGAACATCATTTAA
21784176 AATGTGAACATCATTT
1 AATGTGAACATCATTT
21784192 CTCGCATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (18 bp):
AATGTGAACATCATTTAA
Found at i:21785629 original size:7 final size:7
Alignment explanation
Indices: 21785619--21785644 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
21785609 ATCCAAAAAA
21785619 AAAAAGC
1 AAAAAGC
21785626 AAAAAGC
1 AAAAAGC
21785633 AAAAAGC
1 AAAAAGC
21785640 AAAAA
1 AAAAA
21785645 TCATGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.77, C:0.12, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGC
Found at i:21799700 original size:12 final size:12
Alignment explanation
Indices: 21799685--21799709 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21799675 ATTAAAGAAT
21799685 TAATAGCATTCA
1 TAATAGCATTCA
21799697 TAATAGCATTCA
1 TAATAGCATTCA
21799709 T
1 T
21799710 CATGATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (12 bp):
TAATAGCATTCA
Found at i:21801386 original size:43 final size:43
Alignment explanation
Indices: 21801309--21801588 Score: 334
Period size: 43 Copynumber: 6.6 Consensus size: 43
21801299 GCTCTATCTG
* * * * * *
21801309 AGACATAAGTCTT-CTTTTAAATATAATCTCATGCTCATCCCA
1 AGACATGAGTCTTCCATTTATACATAATCTCACGCTCATTCCA
* **
21801351 AGACATGAGTCTTCCATTTATACATAATCTCATGCTCA-TCTTG
1 AGACATGAGTCTTCCATTTATACATAATCTCACGCTCATTC-CA
* * **
21801394 AGTCACGAGTCTTCCATTTATACATAATCTCACGCTCATTCGG
1 AGACATGAGTCTTCCATTTATACATAATCTCACGCTCATTCCA
* * *
21801437 AGACATGAGTCTTCCATTTATACATAACCTCACGCTCATTTCG
1 AGACATGAGTCTTCCATTTATACATAATCTCACGCTCATTCCA
* * *
21801480 AGACATGAGTCTTCCATTTATATATAATCTCATGCTCATTTCA
1 AGACATGAGTCTTCCATTTATACATAATCTCACGCTCATTCCA
* *
21801523 ACACA--AGTCTTCCATTTATACATAATCTTACGCTCATTCCA
1 AGACATGAGTCTTCCATTTATACATAATCTCACGCTCATTCCA
21801564 AGACATGAGTCTTCCATTTATACAT
1 AGACATGAGTCTTCCATTTATACAT
21801589 CAATTGATTT
Statistics
Matches: 207, Mismatches: 26, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
41 36 0.17
42 13 0.06
43 156 0.75
44 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (43 bp):
AGACATGAGTCTTCCATTTATACATAATCTCACGCTCATTCCA
Found at i:21801574 original size:127 final size:129
Alignment explanation
Indices: 21801351--21801588 Score: 399
Period size: 127 Copynumber: 1.9 Consensus size: 129
21801341 GCTCATCCCA
* * *
21801351 AGACATGAGTCTTCCATTTATACATAATCTCATGCTCATCTTGAGTCACGAGTCTTCCATTTATA
1 AGACATGAGTCTTCCATTTATACATAATCTCATGCTCATCTTCAGACACAAGTCTTCCATTTATA
**
21801416 CATAATCTCACGCTCATTCGGAGACATGAGTCTTCCATTTATACATAACCTCACGCTCATTTCG
66 CATAATCTCACGCTCATTCCAAGACATGAGTCTTCCATTTATACATAACCTCACGCTCATTTCG
*
21801480 AGACATGAGTCTTCCATTTATATATAATCTCATGCTCAT-TTCA-ACACAAGTCTTCCATTTATA
1 AGACATGAGTCTTCCATTTATACATAATCTCATGCTCATCTTCAGACACAAGTCTTCCATTTATA
*
21801543 CATAATCTTACGCTCATTCCAAGACATGAGTCTTCCATTTATACAT
66 CATAATCTCACGCTCATTCCAAGACATGAGTCTTCCATTTATACAT
21801589 CAATTGATTT
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
127 61 0.60
128 3 0.03
129 38 0.37
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (129 bp):
AGACATGAGTCTTCCATTTATACATAATCTCATGCTCATCTTCAGACACAAGTCTTCCATTTATA
CATAATCTCACGCTCATTCCAAGACATGAGTCTTCCATTTATACATAACCTCACGCTCATTTCG
Found at i:21803953 original size:15 final size:15
Alignment explanation
Indices: 21803925--21803965 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
21803915 ATTCACCACT
*
21803925 ACTAGTTCTAGTGAA
1 ACTAGTTCTGGTGAA
*
21803940 ACTGGTTCTGGTGAA
1 ACTAGTTCTGGTGAA
21803955 ACTAGTTCTGG
1 ACTAGTTCTGG
21803966 CAAAGTTAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (15 bp):
ACTAGTTCTGGTGAA
Found at i:21814198 original size:129 final size:129
Alignment explanation
Indices: 21814058--21814321 Score: 485
Period size: 132 Copynumber: 2.0 Consensus size: 129
21814048 GAGATATTGC
21814058 TTTAAACCTGATGTACA-TTGTTGTTCATACTTCGATGATTTTTTAAAGATATTTAATATTATTA
1 TTTAAACCTGATGTACATTTGTTGTTCATACTTCGATGATTTTTTAAAGATATTTAATATTATTA
21814122 ATGGTAAAAGAAAATTATTTGAAATGGTGATCTATTACTTGTTTAGCCTATGTATATTATTTCT
66 ATGGTAAAAGAAAATTATTTGAAATGGTGATCTATTACTTGTTTAGCCTATGTATATTATTTCT
21814186 ATTTAAACCTGATGTACATTGTTGTTGTTCATACTTCGATGATTTTTTAAAGATATTTAATATTA
1 -TTTAAACCTGATGTACA-T-TTGTTGTTCATACTTCGATGATTTTTTAAAGATATTTAATATTA
*
21814251 TTAATGGTAAAAGAAAATTATTTGAAATGGTGATCTATTACTTGTTTAGCCTATGTATATTGTTT
63 TTAATGGTAAAAGAAAATTATTTGAAATGGTGATCTATTACTTGTTTAGCCTATGTATATTATTT
21814316 CT
128 CT
21814318 TTTA
1 TTTA
21814322 TAGAGCTTGT
Statistics
Matches: 131, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
129 17 0.13
131 4 0.03
132 110 0.84
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (129 bp):
TTTAAACCTGATGTACATTTGTTGTTCATACTTCGATGATTTTTTAAAGATATTTAATATTATTA
ATGGTAAAAGAAAATTATTTGAAATGGTGATCTATTACTTGTTTAGCCTATGTATATTATTTCT
Found at i:21819729 original size:28 final size:28
Alignment explanation
Indices: 21819689--21819744 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
21819679 TAGATGAATG
21819689 TGTAAGTTTTGAGGAGAGGAAGAGACTA
1 TGTAAGTTTTGAGGAGAGGAAGAGACTA
21819717 TGTAAGTTTTGAGGAGAGGAAGAGACTA
1 TGTAAGTTTTGAGGAGAGGAAGAGACTA
21819745 AGGTAATTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.04, G:0.36, T:0.25
Consensus pattern (28 bp):
TGTAAGTTTTGAGGAGAGGAAGAGACTA
Found at i:21827658 original size:31 final size:29
Alignment explanation
Indices: 21827594--21827662 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
21827584 ACAATAACGT
* * *
21827594 AAGTTACTAAAACGTAACATTTCAAATAT
1 AAGTGACTAAAACGTAACATTTCAAACAA
*
21827623 AAGTGACTAAAATGTAACATTAGTCAAACAA
1 AAGTGACTAAAACGTAACATT--TCAAACAA
21827654 AAGTGACTA
1 AAGTGACTA
21827663 TTTTGATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.56
31 15 0.44
ACGTcount: A:0.49, C:0.13, G:0.12, T:0.26
Consensus pattern (29 bp):
AAGTGACTAAAACGTAACATTTCAAACAA
Found at i:21834581 original size:2 final size:2
Alignment explanation
Indices: 21834574--21834605 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
21834564 AAGCTATCAG
21834574 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21834606 TGTTTCAGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21847453 original size:18 final size:18
Alignment explanation
Indices: 21847427--21847469 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
21847417 GATATTTTCA
* *
21847427 TGCATTTTTTTATTGTCTC
1 TGCATTTTATT-TTGTCAC
21847446 TGCATTTTATTTTGTCAC
1 TGCATTTTATTTTGTCAC
21847464 TGCATT
1 TGCATT
21847470 CCTTTTGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.14, C:0.16, G:0.12, T:0.58
Consensus pattern (18 bp):
TGCATTTTATTTTGTCAC
Found at i:21848073 original size:15 final size:15
Alignment explanation
Indices: 21848052--21848086 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
21848042 AGTCACTTGA
21848052 AAAAAGAAAAA-AAG
1 AAAAAGAAAAAGAAG
21848066 AGAAAAGAAAAAGAAG
1 A-AAAAGAAAAAGAAG
21848082 AAAAA
1 AAAAA
21848087 ATTATATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.05
15 14 0.74
16 4 0.21
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAGAAG
Found at i:21861598 original size:17 final size:18
Alignment explanation
Indices: 21861576--21861609 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21861566 TAGATTGCAT
21861576 ACATTTT-TATTGTCATC
1 ACATTTTATATTGTCATC
*
21861593 ACATTTTATTTTGTCAT
1 ACATTTTATATTGTCAT
21861610 TGCATTTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.24, C:0.15, G:0.06, T:0.56
Consensus pattern (18 bp):
ACATTTTATATTGTCATC
Found at i:21869712 original size:11 final size:11
Alignment explanation
Indices: 21869690--21869723 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
21869680 TCAACATATC
21869690 AAAAGCAAAAAT
1 AAAAG-AAAAAT
*
21869702 AAACGAAAAAT
1 AAAAGAAAAAT
21869713 AAAAGAAAAAT
1 AAAAGAAAAAT
21869724 GCATTAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.76, C:0.06, G:0.09, T:0.09
Consensus pattern (11 bp):
AAAAGAAAAAT
Found at i:21891023 original size:21 final size:21
Alignment explanation
Indices: 21890957--21891024 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
21890947 AGCTACAAAA
* *
21890957 TTCTACCGGTAAAACT-GAGAC
1 TTCTACCGATACAACTCG-GAC
** *
21890978 TTCTATTGATACAACTCTGG-G
1 TTCTACCGATACAACTC-GGAC
21890999 TTCTACCGATACAACTCGGAC
1 TTCTACCGATACAACTCGGAC
21891020 TTCTA
1 TTCTA
21891025 TCGGTAAAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
20 2 0.06
21 32 0.89
22 1 0.03
23 1 0.03
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (21 bp):
TTCTACCGATACAACTCGGAC
Found at i:21894529 original size:52 final size:52
Alignment explanation
Indices: 21894449--21894683 Score: 317
Period size: 52 Copynumber: 4.5 Consensus size: 52
21894439 TAAAATTAAA
* * *
21894449 AGGTCCGATGACTATGTGCCATCGTGAGTATATGAATCCTTTATGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
* * * *
21894501 ATGTCCGATGGCTATGTGTCATCGTGAGTATATGAATCCTTTACGGACTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
* * * *
21894553 AGGTCCGATGACTATGTGTTATCGTGAGTATATGAATCCTTTACAAATTTTA
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
** *
21894605 AGGTTTGATGACTATGTGTTATCGTGAGTATATGAATCCTTTACGAATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
* * *
21894657 AGGTCCGATTACTTTGTGTCATTGTGA
1 AGGTCCGATGACTATGTGTCATCGTGA
21894684 TTATCAAATG
Statistics
Matches: 159, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 159 1.00
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.37
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
Found at i:21908788 original size:134 final size:134
Alignment explanation
Indices: 21908548--21908815 Score: 536
Period size: 134 Copynumber: 2.0 Consensus size: 134
21908538 CTTGCACCAA
21908548 GCACTCCTCATCAGGAGTTGTTGCTCGTCTGCTCAGTCAGCTCATCGATCTCCAATAAAACTTCA
1 GCACTCCTCATCAGGAGTTGTTGCTCGTCTGCTCAGTCAGCTCATCGATCTCCAATAAAACTTCA
21908613 AAAACAAAAAGTAATTGCAGATTTAATTCCTTCCCTCTTGATATCTTTCTTCATCTTTTCTCCAC
66 AAAACAAAAAGTAATTGCAGATTTAATTCCTTCCCTCTTGATATCTTTCTTCATCTTTTCTCCAC
21908678 TATT
131 TATT
21908682 GCACTCCTCATCAGGAGTTGTTGCTCGTCTGCTCAGTCAGCTCATCGATCTCCAATAAAACTTCA
1 GCACTCCTCATCAGGAGTTGTTGCTCGTCTGCTCAGTCAGCTCATCGATCTCCAATAAAACTTCA
21908747 AAAACAAAAAGTAATTGCAGATTTAATTCCTTCCCTCTTGATATCTTTCTTCATCTTTTCTCCAC
66 AAAACAAAAAGTAATTGCAGATTTAATTCCTTCCCTCTTGATATCTTTCTTCATCTTTTCTCCAC
21908812 TATT
131 TATT
21908816 TATAAGCTTC
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 134 1.00
ACGTcount: A:0.26, C:0.27, G:0.11, T:0.36
Consensus pattern (134 bp):
GCACTCCTCATCAGGAGTTGTTGCTCGTCTGCTCAGTCAGCTCATCGATCTCCAATAAAACTTCA
AAAACAAAAAGTAATTGCAGATTTAATTCCTTCCCTCTTGATATCTTTCTTCATCTTTTCTCCAC
TATT
Found at i:21931224 original size:20 final size:19
Alignment explanation
Indices: 21931190--21931227 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
21931180 TCACATTTAT
*
21931190 AAAAAAAAGAGAAGAAAAG
1 AAAAAAAAGAAAAGAAAAG
21931209 AAAAAAAAGAAAAAGAAAA
1 AAAAAAAAG-AAAAGAAAA
21931228 ATATTTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (19 bp):
AAAAAAAAGAAAAGAAAAG
Found at i:21958373 original size:13 final size:14
Alignment explanation
Indices: 21958350--21958379 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
21958340 TGTCGACCTT
21958350 CTTTTTACCTTTTC
1 CTTTTTACCTTTTC
21958364 CTTTTT-CCTTTTC
1 CTTTTTACCTTTTC
21958377 CTT
1 CTT
21958380 GGAGGTCACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (14 bp):
CTTTTTACCTTTTC
Found at i:21984804 original size:18 final size:18
Alignment explanation
Indices: 21984766--21984803 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
21984756 TCCCTGGCAA
**
21984766 TTTCAGATCTTCCTCCCT
1 TTTCAGATCTAACTCCCT
21984784 TTTCAGATCTAACT-CCT
1 TTTCAGATCTAACTCCCT
21984801 TTT
1 TTT
21984804 TTTTTGCAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.16, C:0.32, G:0.05, T:0.47
Consensus pattern (18 bp):
TTTCAGATCTAACTCCCT
Found at i:21989156 original size:19 final size:20
Alignment explanation
Indices: 21989110--21989160 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
21989100 GATTTTTGGG
* *
21989110 AATTAAAATTGATCAAGTAA
1 AATTAAAATTAATCAAATAA
*
21989130 AATT-AAATTAATCAAAT-T
1 AATTAAAATTAATCAAATAA
21989148 AATTAAAATTAAT
1 AATTAAAATTAAT
21989161 ATAATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 4 0.15
19 19 0.70
20 4 0.15
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (20 bp):
AATTAAAATTAATCAAATAA
Found at i:21993701 original size:40 final size:40
Alignment explanation
Indices: 21993627--21993702 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
21993617 ATCTTCAGGG
* * * *
21993627 GTTTGTCGTGACATAAACATGCTGTGTTACGACATAAGGT
1 GTTTGTCGCGACATAAACATGCTATGTCAAGACATAAGGT
* *
21993667 GTTTGTCGCGACATAGACATTCTATGTCAAGACATA
1 GTTTGTCGCGACATAAACATGCTATGTCAAGACATA
21993703 GATGGTAGAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (40 bp):
GTTTGTCGCGACATAAACATGCTATGTCAAGACATAAGGT
Found at i:21994285 original size:20 final size:21
Alignment explanation
Indices: 21994260--21994298 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
21994250 AACACCTAAG
21994260 AATTG-AAAACAAAATAAACT
1 AATTGAAAAACAAAATAAACT
*
21994280 AATTGAAAAAGAAAATAAA
1 AATTGAAAAACAAAATAAA
21994299 AAGTAAGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.69, C:0.05, G:0.08, T:0.18
Consensus pattern (21 bp):
AATTGAAAAACAAAATAAACT
Found at i:22005208 original size:16 final size:16
Alignment explanation
Indices: 22005187--22005223 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
22005177 GCGCAAGGAC
22005187 AAGAAGAAG-AAACTCA
1 AAGAAGAAGAAAACT-A
22005203 AAGAAGAAGAAAACTA
1 AAGAAGAAGAAAACTA
22005219 AAGAA
1 AAGAA
22005224 ACTTCTGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.68, C:0.08, G:0.19, T:0.05
Consensus pattern (16 bp):
AAGAAGAAGAAAACTA
Found at i:22005944 original size:24 final size:26
Alignment explanation
Indices: 22005912--22005960 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
22005902 TTAGAAAAGG
22005912 AAAATGAGAAAA-AGAAAGAA-AAAAT
1 AAAATGAGAAAAGA-AAAGAAGAAAAT
22005937 AAAA-GAGAAAAGAAAAGAAGAAAA
1 AAAATGAGAAAAGAAAAGAAGAAAA
22005961 ATATGTTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (26 bp):
AAAATGAGAAAAGAAAAGAAGAAAAT
Found at i:22010164 original size:11 final size:11
Alignment explanation
Indices: 22010148--22010182 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
22010138 GCTGTTAAAG
22010148 GTGAGCAGAAT
1 GTGAGCAGAAT
22010159 GTGAGCAGAAT
1 GTGAGCAGAAT
* *
22010170 GTTAGTAGAAT
1 GTGAGCAGAAT
22010181 GT
1 GT
22010183 CTGAAGCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.34, C:0.06, G:0.34, T:0.26
Consensus pattern (11 bp):
GTGAGCAGAAT
Found at i:22011039 original size:28 final size:28
Alignment explanation
Indices: 22010966--22011039 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
22010956 TACTAAAGGA
* * *
22010966 AAGCCTTTTTGGTTATTCTATTATGTGG
1 AAGCCTTTATGGCTATTTTATTATGTGG
* *
22010994 AAGCCTTTATGACTATTTTGTTATGTGG
1 AAGCCTTTATGGCTATTTTATTATGTGG
*
22011022 AAGCCTTTGTGGCTATTT
1 AAGCCTTTATGGCTATTT
22011040 CCGTTATCAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.19, C:0.12, G:0.22, T:0.47
Consensus pattern (28 bp):
AAGCCTTTATGGCTATTTTATTATGTGG
Found at i:22015336 original size:28 final size:28
Alignment explanation
Indices: 22015272--22015375 Score: 131
Period size: 28 Copynumber: 3.8 Consensus size: 28
22015262 TTCCAAAGGT
22015272 TCGCCACAAAGG-TGTCCTTT-ACAGAGA
1 TCGCCACAAAGGCT-TCCTTTAACAGAGA
* * *
22015299 TTGCCCCAAAGACTTCCTTTAACAGAGA
1 TCGCCACAAAGGCTTCCTTTAACAGAGA
22015327 TCGCCACAAAGGCTTCCTTTAACAGAGA
1 TCGCCACAAAGGCTTCCTTTAACAGAGA
* **
22015355 TCACCACTGAGGCTTCCTTTA
1 TCGCCACAAAGGCTTCCTTTA
22015376 CTGGTGTTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.23
28 51 0.77
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (28 bp):
TCGCCACAAAGGCTTCCTTTAACAGAGA
Found at i:22022079 original size:15 final size:16
Alignment explanation
Indices: 22022059--22022114 Score: 78
Period size: 15 Copynumber: 3.4 Consensus size: 16
22022049 CTTTTAAAAA
22022059 ATTTAAAAATA-TTTT
1 ATTTAAAAATATTTTT
*
22022074 ATTTAACAATATTTTT
1 ATTTAAAAATATTTTT
22022090 ATTTCAAAAATAATTTTT
1 ATTT-AAAAAT-ATTTTT
22022108 ATTTAAA
1 ATTTAAA
22022115 TTTGCTTCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
15 10 0.28
16 8 0.22
17 8 0.22
18 10 0.28
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTTAAAAATATTTTT
Found at i:22025416 original size:29 final size:29
Alignment explanation
Indices: 22025383--22025458 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 29
22025373 GAATATGGAG
22025383 AATATCAA-AATATAAACATACTTT-TCCAT
1 AATAT-AATAATATAAACATACTTTCT-CAT
*
22025412 AATATAATTAATATAACCATACTTTCTCAT
1 AATATAA-TAATATAAACATACTTTCTCAT
22025442 AATATAATTAATATAAA
1 AATATAA-TAATATAAA
22025459 ACTATCTTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
28 2 0.05
29 5 0.12
30 34 0.81
31 1 0.02
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (29 bp):
AATATAATAATATAAACATACTTTCTCAT
Found at i:22025425 original size:30 final size:30
Alignment explanation
Indices: 22025391--22025458 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
22025381 AGAATATCAA
22025391 AATATAAACATACTTT-TCCATAATATAATT
1 AATATAAACATACTTTCT-CATAATATAATT
*
22025421 AATATAACCATACTTTCTCATAATATAATT
1 AATATAAACATACTTTCTCATAATATAATT
22025451 AATATAAA
1 AATATAAA
22025459 ACTATCTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 34 0.97
31 1 0.03
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (30 bp):
AATATAAACATACTTTCTCATAATATAATT
Found at i:22038309 original size:58 final size:59
Alignment explanation
Indices: 22038239--22038371 Score: 144
Period size: 58 Copynumber: 2.3 Consensus size: 59
22038229 ATTTAAGGTT
* * * * *
22038239 AAAATGTAATTTTGTAACAATTTTAGGGTTAAAACGTAATTTT-GGAAAGTTTA-GAGTA
1 AAAATGTGATTTTGGAA-AATTTGAGGGTAAAAACGTAATTTTAGGAAAGATTAGGAGTA
* * * * *
22038297 AAAATGTGATTTTAGGAAAGTTTGAGGGTAAAAATGTGATTTTAGGAAAGATTAGGGGTC
1 AAAATGTGATTTT-GGAAAATTTGAGGGTAAAAACGTAATTTTAGGAAAGATTAGGAGTA
22038357 AAAATGTGATTTTGG
1 AAAATGTGATTTTGG
22038372 GAAAGATTAA
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
58 32 0.52
59 14 0.23
60 16 0.26
ACGTcount: A:0.38, C:0.02, G:0.25, T:0.35
Consensus pattern (59 bp):
AAAATGTGATTTTGGAAAATTTGAGGGTAAAAACGTAATTTTAGGAAAGATTAGGAGTA
Found at i:22038429 original size:59 final size:59
Alignment explanation
Indices: 22038297--22038463 Score: 235
Period size: 59 Copynumber: 2.8 Consensus size: 59
22038287 GTTTAGAGTA
* * * * * *
22038297 AAAATGTGATTTTAGGAAAGTTTGAGGGTAAAAATGTGATTTTAGGAAAGATTAGGGGTC
1 AAAATGTGATTTTGGGAAAGATTAAGGGTAAAAATGTGATTTT-GGGAAGATCAAGGGTC
* *
22038357 AAAATGTGATTTTGGGAAAGATTAAGGCTCAAAATGTGATTTTGGGAAGATCAAGGGTC
1 AAAATGTGATTTTGGGAAAGATTAAGGGTAAAAATGTGATTTTGGGAAGATCAAGGGTC
* *
22038416 AAAATGTGATTTTGGGAAAGATTAAGGGTTAAAATATGATTTTGGGAA
1 AAAATGTGATTTTGGGAAAGATTAAGGGTAAAAATGTGATTTTGGGAA
22038464 AGTTTGAGTG
Statistics
Matches: 96, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
59 58 0.60
60 38 0.40
ACGTcount: A:0.37, C:0.03, G:0.29, T:0.31
Consensus pattern (59 bp):
AAAATGTGATTTTGGGAAAGATTAAGGGTAAAAATGTGATTTTGGGAAGATCAAGGGTC
Found at i:22038480 original size:89 final size:88
Alignment explanation
Indices: 22038263--22038468 Score: 254
Period size: 89 Copynumber: 2.3 Consensus size: 88
22038253 TAACAATTTT
* * * **
22038263 AGGGTTAAAACGTAATTTT-GGAAAGTTTAGAGTAAAAATGTGATTTTAGGAAAGTTTGAGGGTA
1 AGGGTTAAAATGTGATTTTGGGAAAGTTTAG-GTAAAAATGTGATTTTAGGAAAGATCAAGGGTA
22038327 AAAATGTGATTTTAGGAAAGATTA
65 AAAATGTGATTTTAGGAAAGATTA
* * * * *
22038351 GGGGTCAAAATGTGATTTTGGGAAAGATTAAGGCTCAAAATGTGATTTT-GGGAAGATCAAGGGT
1 AGGGTTAAAATGTGATTTTGGGAAAG-TTTAGG-TAAAAATGTGATTTTAGGAAAGATCAAGGGT
* *
22038415 CAAAATGTGATTTTGGGAAAGATTA
64 AAAAATGTGATTTTAGGAAAGATTA
*
22038440 AGGGTTAAAATATGATTTTGGGAAAGTTT
1 AGGGTTAAAATGTGATTTTGGGAAAGTTT
22038469 GAGTGTTAAA
Statistics
Matches: 99, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
88 17 0.17
89 64 0.65
90 18 0.18
ACGTcount: A:0.37, C:0.03, G:0.28, T:0.32
Consensus pattern (88 bp):
AGGGTTAAAATGTGATTTTGGGAAAGTTTAGGTAAAAATGTGATTTTAGGAAAGATCAAGGGTAA
AAATGTGATTTTAGGAAAGATTA
Found at i:22038488 original size:30 final size:30
Alignment explanation
Indices: 22038263--22038465 Score: 241
Period size: 30 Copynumber: 6.9 Consensus size: 30
22038253 TAACAATTTT
* * * *
22038263 AGGGTTAAAACGTAATTTT-GGAAAG-TTT
1 AGGGTCAAAATGTGATTTTGGGAAAGATTA
* * * * *
22038291 AGAGTAAAAATGTGATTTTAGGAAAGTTTG
1 AGGGTCAAAATGTGATTTTGGGAAAGATTA
* *
22038321 AGGGTAAAAATGTGATTTTAGGAAAGATTA
1 AGGGTCAAAATGTGATTTTGGGAAAGATTA
*
22038351 GGGGTCAAAATGTGATTTTGGGAAAGATTA
1 AGGGTCAAAATGTGATTTTGGGAAAGATTA
* *
22038381 AGGCTCAAAATGTGATTTTGGG-AAGATCA
1 AGGGTCAAAATGTGATTTTGGGAAAGATTA
22038410 AGGGTCAAAATGTGATTTTGGGAAAGATTA
1 AGGGTCAAAATGTGATTTTGGGAAAGATTA
* *
22038440 AGGGTTAAAATATGATTTTGGGAAAG
1 AGGGTCAAAATGTGATTTTGGGAAAG
22038466 TTTGAGTGTT
Statistics
Matches: 154, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
28 15 0.10
29 33 0.21
30 106 0.69
ACGTcount: A:0.37, C:0.03, G:0.29, T:0.31
Consensus pattern (30 bp):
AGGGTCAAAATGTGATTTTGGGAAAGATTA
Found at i:22038488 original size:89 final size:89
Alignment explanation
Indices: 22038321--22038488 Score: 230
Period size: 89 Copynumber: 1.9 Consensus size: 89
22038311 GGAAAGTTTG
* *
22038321 AGGGTAAAAATGTGATTTTAGGAAAGATTAGGGGTCAAAATGTGATTTTGGGAAAGATTAAGGCT
1 AGGGTAAAAATGTGATTTTAGGAAAGATTAAGGGTCAAAATATGATTTTGGGAAAGATTAAGGCT
* *
22038386 CAAAATGTGATTTTGGGAAGATCA
66 CAAAATATAATTTTGGGAAGATCA
* * * * *
22038410 AGGGTCAAAATGTGATTTTGGGAAAGATTAAGGGTTAAAATATGATTTTGGGAAAGTTTGAGTG-
1 AGGGTAAAAATGTGATTTTAGGAAAGATTAAGGGTCAAAATATGATTTTGGGAAAGATTAAG-GC
*
22038474 TTAAAATATAATTTT
65 TCAAAATATAATTTT
22038489 TAAATAAAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
89 67 0.99
90 1 0.01
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.33
Consensus pattern (89 bp):
AGGGTAAAAATGTGATTTTAGGAAAGATTAAGGGTCAAAATATGATTTTGGGAAAGATTAAGGCT
CAAAATATAATTTTGGGAAGATCA
Found at i:22039953 original size:17 final size:17
Alignment explanation
Indices: 22039931--22039977 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
22039921 GGTTTTGGGT
22039931 ATTGGG-CTTGTTTTGTA
1 ATTGGGTCTT-TTTTGTA
22039948 ATTGGGTCTTTTTTGTGA
1 ATTGGGTCTTTTTTGT-A
* *
22039966 CTTGGGCCTTTT
1 ATTGGGTCTTTT
22039978 GTAAGTGGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.09, C:0.11, G:0.28, T:0.53
Consensus pattern (17 bp):
ATTGGGTCTTTTTTGTA
Found at i:22039976 original size:18 final size:16
Alignment explanation
Indices: 22039931--22039986 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
22039921 GGTTTTGGGT
22039931 ATTGGGCTTGTTTTGTA
1 ATTGGGCTT-TTTTGTA
22039948 ATTGGGTCTTTTTTGTGA
1 ATTGGG-CTTTTTTGT-A
* *
22039966 CTTGGGC-CTTTTGTA
1 ATTGGGCTTTTTTGTA
*
22039981 AGTGGG
1 ATTGGG
22039987 GTTTAATGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
15 5 0.15
16 6 0.18
17 13 0.39
18 9 0.27
ACGTcount: A:0.11, C:0.09, G:0.32, T:0.48
Consensus pattern (16 bp):
ATTGGGCTTTTTTGTA
Found at i:22049045 original size:16 final size:17
Alignment explanation
Indices: 22049024--22049062 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
22049014 AGATTGCATA
22049024 CATTTTA-TTGTCATCG
1 CATTTTATTTGTCATCG
*
22049040 CATTTTATTTTGTCATTG
1 CATTTTA-TTTGTCATCG
22049058 CATTT
1 CATTT
22049063 CTTTTGTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
18 13 0.65
ACGTcount: A:0.18, C:0.15, G:0.10, T:0.56
Consensus pattern (17 bp):
CATTTTATTTGTCATCG
Found at i:22049682 original size:17 final size:18
Alignment explanation
Indices: 22049662--22049695 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22049652 AAAAAAATTT
*
22049662 GAGAAAA-AAAGAGAAAA
1 GAGAAAAGAAAAAGAAAA
22049679 GAGAAAAGAAAAAGAAA
1 GAGAAAAGAAAAAGAAA
22049696 TATTGTCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
GAGAAAAGAAAAAGAAAA
Found at i:22067278 original size:30 final size:30
Alignment explanation
Indices: 22067244--22067308 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
22067234 ACTTATTTTA
* *
22067244 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATAATTTTAGAGACAT
22067274 TTGTTAATTTTGTTATAATTTTAGAGACAT
1 TTGTTAATTTTGTTATAATTTTAGAGACAT
22067304 TTGTT
1 TTGTT
22067309 TGTTAAGTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.25, C:0.03, G:0.15, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATAATTTTAGAGACAT
Found at i:22067943 original size:40 final size:39
Alignment explanation
Indices: 22067894--22067997 Score: 136
Period size: 40 Copynumber: 2.6 Consensus size: 39
22067884 AAACGTCGAA
* * *
22067894 AAAAGTAAAGTAATAATGGTGTTTTTTCATAAACGCCAC
1 AAAAGTAAAGAAATAACGGTGTTTTCTCATAAACGCCAC
22067933 AAAAGATAAAGAAATAACGGTGTTTTCTCATAAACGCCAC
1 AAAAG-TAAAGAAATAACGGTGTTTTCTCATAAACGCCAC
* * *
22067973 AAAAGGTAAAGCAATAGCGGCGTTT
1 AAAA-GTAAAGAAATAACGGTGTTT
22067998 ATGAAAAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 5 0.09
40 51 0.89
41 1 0.02
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.25
Consensus pattern (39 bp):
AAAAGTAAAGAAATAACGGTGTTTTCTCATAAACGCCAC
Found at i:22068537 original size:13 final size:13
Alignment explanation
Indices: 22068517--22068549 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
22068507 AGTTAAAAAA
22068517 ATAATAAAATTAAG
1 ATAATAAAA-TAAG
22068531 A-AATAAAATAAG
1 ATAATAAAATAAG
22068543 ATAATAA
1 ATAATAA
22068550 TTAATTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.28
13 12 0.67
14 1 0.06
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (13 bp):
ATAATAAAATAAG
Found at i:22069330 original size:83 final size:84
Alignment explanation
Indices: 22069217--22069394 Score: 277
Period size: 83 Copynumber: 2.1 Consensus size: 84
22069207 TCTTAACTTT
* * * *
22069217 TAGCGGTGTTTATGGGAAAAATACCTCAATAGGTAAAGAGCATTAGCGGTGTTTTACCCATAAAC
1 TAGCGGCGTTTATGGGAAAAATACCGCAATAGGTAAAGAGCATTAGCAGCGTTTTACCCATAAAC
*
22069282 TCCGCTAAAGGTTAAGCAA
66 GCCGCTAAAGGTTAAGCAA
* **
22069301 TAGCGGCGTTTATGGG-AAAATGCCGCAATAGGTAAAGAGCATTAGCAGCGTTTTTTCCATAAAC
1 TAGCGGCGTTTATGGGAAAAATACCGCAATAGGTAAAGAGCATTAGCAGCGTTTTACCCATAAAC
22069365 GCCGCTAAAGGTTAAGCAA
66 GCCGCTAAAGGTTAAGCAA
22069384 TAGCGGCGTTT
1 TAGCGGCGTTT
22069395 TTACCATAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
83 71 0.83
84 15 0.17
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (84 bp):
TAGCGGCGTTTATGGGAAAAATACCGCAATAGGTAAAGAGCATTAGCAGCGTTTTACCCATAAAC
GCCGCTAAAGGTTAAGCAA
Found at i:22069394 original size:41 final size:41
Alignment explanation
Indices: 22069255--22069413 Score: 144
Period size: 41 Copynumber: 3.9 Consensus size: 41
22069245 ATAGGTAAAG
* * *
22069255 AGCATTAGCGGTG-TTTTACCCATAAACTCCGCTAAAGGTTA
1 AGCAATAGCGGCGTTTTTA-CCATAAACGCCGCTAAAGGTTA
* *** * *
22069296 AGCAATAGCGGCGTTTATGGGA-AAATGCCGC-AATAGGTAAA
1 AGCAATAGCGGCGTTTTTACCATAAACGCCGCTAA-AGGT-TA
* * *
22069337 GAGCATTAGCAGCGTTTTTTCCATAAACGCCGCTAAAGGTTA
1 -AGCAATAGCGGCGTTTTTACCATAAACGCCGCTAAAGGTTA
*
22069379 AGCAATAGCGGCGTTTTTACCATAAACGCCACTAA
1 AGCAATAGCGGCGTTTTTACCATAAACGCCGCTAA
22069414 TGCTCTTATT
Statistics
Matches: 91, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
39 2 0.02
40 11 0.12
41 44 0.48
42 20 0.22
43 12 0.13
44 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (41 bp):
AGCAATAGCGGCGTTTTTACCATAAACGCCGCTAAAGGTTA
Found at i:22070997 original size:54 final size:54
Alignment explanation
Indices: 22070915--22071118 Score: 205
Period size: 54 Copynumber: 3.7 Consensus size: 54
22070905 CGAGATTTTG
* * * * *
22070915 AAAAAAAATTTGGTGTTGATCAATGC-TTGGTTGACACCACCTTTTTGATCAGAT
1 AAAAAAAATTTGGTGTTG-GCCATGCATTGGTCGACACCACATTTTTAATCAGAT
* * *
22070969 AAAAAAATTTTGGTATTGGCCAATGC-TTGATCGACACCACATTTTTAATCAGAT
1 AAAAAAAATTTGGTGTTGGCC-ATGCATTGGTCGACACCACATTTTTAATCAGAT
* * ** * *
22071023 AAAAAAAATTTTGGTGCTGGCCATGCATTGGTCGACACTAGTGTTTTTTTATTAGAT
1 AAAAAAAA-TTTGGTGTTGGCCATGCATTGGTCGACACCA--CATTTTTAATCAGAT
* *
22071080 AAAAAAAATTTGGTGTTGGCCATGCATTGGCCTACACCA
1 AAAAAAAATTTGGTGTTGGCCATGCATTGGTCGACACCA
22071119 ACTTTCTCTC
Statistics
Matches: 124, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 55 0.44
55 22 0.18
56 27 0.22
57 19 0.15
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (54 bp):
AAAAAAAATTTGGTGTTGGCCATGCATTGGTCGACACCACATTTTTAATCAGAT
Found at i:22072899 original size:19 final size:20
Alignment explanation
Indices: 22072856--22072899 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
22072846 TTTAAAATAA
*
22072856 TTTTTTTCTACTTTCGAAAT
1 TTTTTTTATACTTTCGAAAT
* *
22072876 GTTTTTTATATTTTCG-AAT
1 TTTTTTTATACTTTCGAAAT
22072895 TTTTT
1 TTTTT
22072900 AAAAATAACA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.18, C:0.09, G:0.07, T:0.66
Consensus pattern (20 bp):
TTTTTTTATACTTTCGAAAT
Found at i:22073010 original size:35 final size:36
Alignment explanation
Indices: 22072970--22073038 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
22072960 TAGTTTCTCG
22072970 AATTTTTTAAA-AT-TATTTTTATATCTTCGAAATGA
1 AATTTTTTAAATATAT-TTTTTATATCTTCGAAATGA
* *
22073005 AATTTTTTACATATATTTTTTATATTTTCGAAAT
1 AATTTTTTAAATATATTTTTTATATCTTCGAAAT
22073039 ATCTTTTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
35 10 0.33
36 19 0.63
37 1 0.03
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (36 bp):
AATTTTTTAAATATATTTTTTATATCTTCGAAATGA
Found at i:22074191 original size:17 final size:17
Alignment explanation
Indices: 22074161--22074245 Score: 74
Period size: 17 Copynumber: 5.2 Consensus size: 17
22074151 TATTTTTTAA
22074161 ATTTA-ATTTGTAATTTC
1 ATTTATATTT-TAATTTC
22074178 ATTTATATTTTAATTT-
1 ATTTATATTTTAATTTC
* *
22074194 A---AT-TTCTAATTGC
1 ATTTATATTTTAATTTC
*
22074207 GTTTATATTTTAATTTC
1 ATTTATATTTTAATTTC
*
22074224 GTTTATATTTTAAATTTC
1 ATTTATATTTT-AATTTC
22074242 ATTT
1 ATTT
22074246 CTAATTTCGT
Statistics
Matches: 55, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
12 7 0.13
13 2 0.04
16 3 0.05
17 30 0.55
18 13 0.24
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.61
Consensus pattern (17 bp):
ATTTATATTTTAATTTC
Found at i:22074203 original size:29 final size:29
Alignment explanation
Indices: 22074144--22074222 Score: 113
Period size: 29 Copynumber: 2.7 Consensus size: 29
22074134 TTTTGATTTT
* *
22074144 TTTCGTTTATTTTTTAAATTTAATTTGTAA
1 TTTCGTTTATATTTT-AATTTAATTTCTAA
*
22074174 TTTCATTTATATTTTAATTTAATTTCTAA
1 TTTCGTTTATATTTTAATTTAATTTCTAA
*
22074203 TTGCGTTTATATTTTAATTT
1 TTTCGTTTATATTTTAATTT
22074223 CGTTTATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 31 0.70
30 13 0.30
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (29 bp):
TTTCGTTTATATTTTAATTTAATTTCTAA
Found at i:22074241 original size:18 final size:17
Alignment explanation
Indices: 22074191--22074271 Score: 75
Period size: 17 Copynumber: 4.9 Consensus size: 17
22074181 TATATTTTAA
*
22074191 TTTA-ATTTCTAATTGCG
1 TTTATATTT-TAATTTCG
22074208 TTTATATTTTAATTTCG
1 TTTATATTTTAATTTCG
22074225 TTTATATTTTAAATTTC-
1 TTTATATTTT-AATTTCG
*
22074242 ---AT-TTCTAATTTCG
1 TTTATATTTTAATTTCG
22074255 TTTATATTTTAAATTTC
1 TTTATATTTT-AATTTC
22074272 ATTTCTAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
12 6 0.11
13 3 0.06
14 2 0.04
16 2 0.04
17 24 0.45
18 16 0.30
ACGTcount: A:0.26, C:0.09, G:0.05, T:0.60
Consensus pattern (17 bp):
TTTATATTTTAATTTCG
Found at i:22074251 original size:30 final size:30
Alignment explanation
Indices: 22074213--22074281 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
22074203 TTGCGTTTAT
22074213 ATTT-TAATTTCGTTTATATTTTAAATTTC
1 ATTTCTAATTTCGTTTATATTTTAAATTTC
22074242 ATTTCTAATTTCGTTTATATTTTAAATTTC
1 ATTTCTAATTTCGTTTATATTTTAAATTTC
22074272 ATTTCTAATT
1 ATTTCTAATT
22074282 ATTATTTTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
29 4 0.10
30 35 0.90
ACGTcount: A:0.28, C:0.09, G:0.03, T:0.61
Consensus pattern (30 bp):
ATTTCTAATTTCGTTTATATTTTAAATTTC
Found at i:22074298 original size:76 final size:74
Alignment explanation
Indices: 22074144--22074290 Score: 199
Period size: 76 Copynumber: 2.0 Consensus size: 74
22074134 TTTTGATTTT
* * *
22074144 TTTCGTTTATTTTTTAAATTTAATTTGTAATTTCATTTATATTTTAATTTAATTTCTAATTGCGT
1 TTTCGTTTATATTTTAAATTTAATTTCTAATTTCATTTATATTTTAATTTAATTTCTAATT--GA
22074209 TTATATTTTAA
64 TTATATTTTAA
* * *
22074220 TTTCGTTTATATTTTAAATTTCATTTCTAATTTCGTTTATATTTTAAATTTCATTTCTAATT-AT
1 TTTCGTTTATATTTTAAATTTAATTTCTAATTTCATTTATATTTT-AATTTAATTTCTAATTGAT
22074284 TAT-TTTT
65 TATATTTT
22074291 CAAAATTTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
73 4 0.06
74 4 0.06
76 41 0.64
77 15 0.23
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.63
Consensus pattern (74 bp):
TTTCGTTTATATTTTAAATTTAATTTCTAATTTCATTTATATTTTAATTTAATTTCTAATTGATT
ATATTTTAA
Found at i:22075191 original size:60 final size:60
Alignment explanation
Indices: 22075093--22075439 Score: 354
Period size: 60 Copynumber: 5.9 Consensus size: 60
22075083 GAAAGGAGAG
* * * *
22075093 AAAGTTGGTGTCGGCCAATACATGGCCAACACCAAAAAAATTA-TTTTTTATCTGATTAAA
1 AAAGGTGGTGTCGACCAATGCATGGCCAACACCAAAAAAATTATTTTTTTATCAGA-TAAA
* * * *
22075153 AAAGGTGGTGTCGACCAATGCATGGCTAATACCAAAAAATTTATTTTTTTATCTGATAAA
1 AAAGGTGGTGTCGACCAATGCATGGCCAACACCAAAAAAATTATTTTTTTATCAGATAAA
* * * * * * *
22075213 AAAGATGGTGTTGATCAATGAATGGCCAATACAAAAAAAATCATTTTTTTATCAGATAAA
1 AAAGGTGGTGTCGACCAATGCATGGCCAACACCAAAAAAATTATTTTTTTATCAGATAAA
* * * *
22075273 AAATGTGGTGTCGGCCAA-GCATTGACTAACACC-----AA-T-TTTTTTTATCAGATAAA
1 AAAGGTGGTGTCGACCAATGCA-TGGCCAACACCAAAAAAATTATTTTTTTATCAGATAAA
** * * * *
22075326 AAATATGGTGTCGGCCAATGCATGGTCAACACCAAAAAAATTTATTTTTTTATCAAATGAA
1 AAAGGTGGTGTCGACCAATGCATGGCCAACACCAAAAAAA-TTATTTTTTTATCAGATAAA
* *
22075387 AAAGGTGGTGTCGACTAATGCATGGCCAACACAAAAAAAATTA-TTTTTTATCA
1 AAAGGTGGTGTCGACCAATGCATGGCCAACACCAAAAAAATTATTTTTTTATCA
22075440 AATTTTTTTT
Statistics
Matches: 238, Mismatches: 38, Indels: 23
0.80 0.13 0.08
Matches are distributed among these distances:
53 42 0.18
54 3 0.01
55 2 0.01
58 2 0.01
59 12 0.05
60 116 0.49
61 61 0.26
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (60 bp):
AAAGGTGGTGTCGACCAATGCATGGCCAACACCAAAAAAATTATTTTTTTATCAGATAAA
Found at i:22075357 original size:53 final size:53
Alignment explanation
Indices: 22075256--22075360 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
22075246 AAAAAAATCA
* *
22075256 TTTTTTTATCAGATAAAAAATGTGGTGTCGGCCAAGCATTGACTAACACCAAT
1 TTTTTTTATCAGATAAAAAATATGGTGTCGGCCAAGCATGGACTAACACCAAT
*
22075309 TTTTTTTATCAGATAAAAAATATGGTGTCGGCCAATGCATGGTC-AACACCAA
1 TTTTTTTATCAGATAAAAAATATGGTGTCGGCCAA-GCATGGACTAACACCAA
22075361 AAAAATTTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
53 42 0.88
54 6 0.12
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (53 bp):
TTTTTTTATCAGATAAAAAATATGGTGTCGGCCAAGCATGGACTAACACCAAT
Found at i:22075448 original size:15 final size:15
Alignment explanation
Indices: 22075424--22075453 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22075414 AACACAAAAA
22075424 AAATTATTTTTTATC
1 AAATTATTTTTTATC
*
22075439 AAATTTTTTTTTATC
1 AAATTATTTTTTATC
22075454 TGATAAAAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
AAATTATTTTTTATC
Found at i:22075580 original size:53 final size:53
Alignment explanation
Indices: 22075485--22075690 Score: 164
Period size: 54 Copynumber: 3.8 Consensus size: 53
22075475 TAATGCACGA
* * * *
22075485 CCAACACCAAATTTGTTTTTTATCAGA-TAAAAAGGTTGGTGTCGGCAAATAATAG
1 CCAACACCAAA-AT-TTTTTTATCTGATTAAAAATG-TGGTGTCGGCAAATAATGG
* * * ** *
22075540 CCAACACCAAAACTTTTTTATCTGATTAAAAATGTAGTGTCGACCAAGCATTGG
1 CCAACACCAAAATTTTTTTATCTGATTAAAAATGTGGTGTCG-GCAAATAATGG
* * * * * *
22075594 CCAACACCAAATTTTTTTTATTTGATAAAAAATACTGGTGTCGGCCAATGCATGG
1 CCAACACCAAAATTTTTTTATCTGATTAAAAAT-GTGGTGTCGGCAAAT-AATGG
* *
22075649 CCAACACCAAAATTTTTTTTATCT-ACTCAAAAAGGTGGTGTC
1 CCAACACCAAAA-TTTTTTTATCTGA-TTAAAAATGTGGTGTC
22075691 AGCCAAGCAT
Statistics
Matches: 118, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
53 18 0.15
54 44 0.37
55 40 0.34
56 16 0.14
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (53 bp):
CCAACACCAAAATTTTTTTATCTGATTAAAAATGTGGTGTCGGCAAATAATGG
Found at i:22075651 original size:55 final size:54
Alignment explanation
Indices: 22075438--22075722 Score: 231
Period size: 55 Copynumber: 5.2 Consensus size: 54
22075428 TATTTTTTAT
** * * * * *
22075438 CAAATTTTTTTTTATCTGAT-AAAAGGGTAGTGTCGACTAATGCACGACCAACAC
1 CAAA-TTTTTTTTATCTGATAAAAAATGTGGTGTCGGCCAATGCATGGCCAACAC
* * * * *
22075492 CAAATTTGTTTTTTATCAGAT-AAAAAGGTTGGTGTCGGCAAAT-AATAGCCAACAC
1 CAAA-TT-TTTTTTATCTGATAAAAAATG-TGGTGTCGGCCAATGCATGGCCAACAC
** * * *
22075547 CAAAACTTTTTTATCTGATTAAAAATGTAGTGTCGACCAA-GCATTGGCCAACAC
1 CAAATTTTTTTTATCTGATAAAAAATGTGGTGTCGGCCAATGCA-TGGCCAACAC
* *
22075601 CAAATTTTTTTTATTTGATAAAAAATACTGGTGTCGGCCAATGCATGGCCAACAC
1 CAAATTTTTTTTATCTGATAAAAAAT-GTGGTGTCGGCCAATGCATGGCCAACAC
* * * *
22075656 CAAAATTTTTTTTATCT-ACTCAAAAAGGTGGTGTCAGCCAA-GCATTGGCTAACAC
1 C-AAATTTTTTTTATCTGA-TAAAAAATGTGGTGTCGGCCAATGCA-TGGCCAACAC
*
22075711 CAATTTTTTTTT
1 CAAATTTTTTTT
22075723 CAAAATCTCA
Statistics
Matches: 189, Mismatches: 32, Indels: 20
0.78 0.13 0.08
Matches are distributed among these distances:
53 23 0.12
54 57 0.30
55 75 0.40
56 34 0.18
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (54 bp):
CAAATTTTTTTTATCTGATAAAAAATGTGGTGTCGGCCAATGCATGGCCAACAC
Found at i:22075710 original size:110 final size:107
Alignment explanation
Indices: 22075445--22075722 Score: 296
Period size: 110 Copynumber: 2.6 Consensus size: 107
22075435 TATCAAATTT
* * * *
22075445 TTTTTTATCTGAT-AAAAGGGTAGTGTCGACTAATGCA-CGACCAACACCAAATTTGTTTTTTAT
1 TTTTTTATCTGATCAAAAAGGTAGTGTCGACCAA-GCATTGGCCAACACCAAA-TT-TTTTTTAT
*
22075508 CAGATAAAAAGGTTGGTGTCGGCAAATAATAGCCAACACCAAAAC
63 CAGATAAAAAGATTGGTGTCGGCAAATAATAGCCAACACCAAAAC
* * **
22075553 TTTTTTATCTGATTAAAAATGTAGTGTCGACCAAGCATTGGCCAACACCAAATTTTTTTTATTTG
1 TTTTTTATCTGATCAAAAAGGTAGTGTCGACCAAGCATTGGCCAACACCAAATTTTTTTTATCAG
* * * *
22075618 ATAAAAA-ATACTGGTGTCGGCCAATGCATGGCCAACACCAAAATT
66 ATAAAAAGAT--TGGTGTCGGCAAAT-AATAGCCAACACCAAAA-C
* * *
22075663 TTTTTTATCT-ACTCAAAAAGGTGGTGTC-AGCCAAGCATTGGCTAACACCAATTTTTTTTT
1 TTTTTTATCTGA-TCAAAAAGGTAGTGTCGA-CCAAGCATTGGCCAACACCAAATTTTTTTT
22075723 CAAAATCTCA
Statistics
Matches: 145, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
106 1 0.01
107 16 0.11
108 31 0.21
109 46 0.32
110 51 0.35
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (107 bp):
TTTTTTATCTGATCAAAAAGGTAGTGTCGACCAAGCATTGGCCAACACCAAATTTTTTTTATCAG
ATAAAAAGATTGGTGTCGGCAAATAATAGCCAACACCAAAAC
Found at i:22078118 original size:8 final size:8
Alignment explanation
Indices: 22078105--22078192 Score: 52
Period size: 8 Copynumber: 10.5 Consensus size: 8
22078095 TAATTTAAAA
22078105 TATTTAAT
1 TATTTAAT
22078113 TATTTAATT
1 TATTTAA-T
22078122 ATATTTAAT
1 -TATTTAAT
* *
22078131 TAAATTAAA
1 T-ATTTAAT
22078140 T-TTTAAT
1 TATTTAAT
*
22078147 TATTAAAAAT
1 TATT--TAAT
* ** *
22078157 AATCCAAA
1 TATTTAAT
22078165 TATTTAAT
1 TATTTAAT
22078173 TATTTAAT
1 TATTTAAT
*
22078181 AATTTAAT
1 TATTTAAT
22078189 TATT
1 TATT
22078193 AAAAATAACC
Statistics
Matches: 59, Mismatches: 15, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
7 5 0.08
8 34 0.58
9 8 0.14
10 12 0.20
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (8 bp):
TATTTAAT
Found at i:22078151 original size:14 final size:15
Alignment explanation
Indices: 22078088--22078195 Score: 75
Period size: 16 Copynumber: 7.2 Consensus size: 15
22078078 GAAACAACCC
*
22078088 AAATATTTAATT-TA
1 AAATATTTAATTATT
22078102 AAATATTTAATTATTT
1 AAATATTTAATTA-TT
22078118 AATTATATTTAATTAAATT
1 AA--ATATTTAATT--ATT
22078137 AAAT-TTTAATTATT
1 AAATATTTAATTATT
* **
22078151 AAA-A-ATAA-T-CC
1 AAATATTTAATTATT
22078162 AAATATTTAATTATT
1 AAATATTTAATTATT
*
22078177 TAATAATTTAATTATT
1 AAAT-ATTTAATTATT
22078193 AAA
1 AAA
22078196 AATAACCCAA
Statistics
Matches: 73, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
11 3 0.04
12 2 0.03
13 6 0.08
14 19 0.26
15 3 0.04
16 23 0.32
17 2 0.03
18 10 0.14
19 4 0.05
20 1 0.01
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
AAATATTTAATTATT
Found at i:22078168 original size:42 final size:42
Alignment explanation
Indices: 22078122--22078232 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 42
22078112 TTATTTAATT
* *
22078122 ATATTTAATTAAATTAA-ATTTTAATTATTAAAAATAATCCAA
1 ATATTTAATT-AATTAATAATTTAATTATTAAAAATAACCCAA
*
22078164 ATATTTAATTATTTAATAATTTAATTATTAAAAATAACCCAA
1 ATATTTAATTAATTAATAATTTAATTATTAAAAATAACCCAA
*
22078206 AAATTTAATTTAA--AAT-ATTTAATTATT
1 ATATTTAA-TTAATTAATAATTTAATTATT
22078233 TAATTATTAA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
40 11 0.18
41 8 0.13
42 40 0.65
43 3 0.05
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (42 bp):
ATATTTAATTAATTAATAATTTAATTATTAAAAATAACCCAA
Found at i:22078228 original size:56 final size:59
Alignment explanation
Indices: 22078083--22078240 Score: 161
Period size: 56 Copynumber: 2.7 Consensus size: 59
22078073 TTTTAGAAAC
*
22078083 AACCCAAATATTTAATTTAAAATATTTAATTATTTAATTATATTTAATTAAATTAAATTTTAAT
1 AACCCAAAAATTTAATTTAAAATATTTAATTATTTAA-TATATTTAATT-AATTAAA---TAAT
* ** **
22078147 TA-TTAAAAA--TAA-TCCAAATATTTAATTATTTAATA-ATTTAATT-ATTAAA-AAT
1 AACCCAAAAATTTAATTTAAAATATTTAATTATTTAATATATTTAATTAATTAAATAAT
22078199 AACCCAAAAATTTAATTTAAAATATTTAATTATTTAAT-TATT
1 AACCCAAAAATTTAATTTAAAATATTTAATTATTTAATATATT
22078241 AAAAACAACC
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
52 4 0.05
53 5 0.06
55 3 0.04
56 29 0.37
58 8 0.10
59 2 0.03
60 19 0.24
61 3 0.04
63 4 0.05
64 1 0.01
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (59 bp):
AACCCAAAAATTTAATTTAAAATATTTAATTATTTAATATATTTAATTAATTAAATAAT
Found at i:22078237 original size:48 final size:44
Alignment explanation
Indices: 22078141--22078255 Score: 135
Period size: 48 Copynumber: 2.6 Consensus size: 44
22078131 TAAATTAAAT
* *
22078141 TTTAATTATTAAAAATAATCC--AAATATTTAATTATTTAATAA
1 TTTAATTATTAAAAATAACCCAAAAATATTTAAATATTTAATAA
*
22078183 TTTAATTATTAAAAATAACCCAAAAATTTAATTTAAAATATTTAATTA
1 TTTAATTATTAAAAATAACCCAAAAA--T-ATTT-AAATATTTAATAA
* *
22078231 TTTAATTATTAAAAACAACCTAAAA
1 TTTAATTATTAAAAATAACCCAAAA
22078256 TTTTTTCCTA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
42 20 0.32
44 3 0.05
46 1 0.02
47 4 0.06
48 34 0.55
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (44 bp):
TTTAATTATTAAAAATAACCCAAAAATATTTAAATATTTAATAA
Found at i:22084597 original size:19 final size:19
Alignment explanation
Indices: 22084573--22084620 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
22084563 ATATCTACTT
22084573 TTTGATGGCTCAAACCACA
1 TTTGATGGCTCAAACCACA
22084592 TTTGATGGCTCAAACCACA
1 TTTGATGGCTCAAACCACA
22084611 TTTGATGGCT
1 TTTGATGGCT
22084621 TGCTTCTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (19 bp):
TTTGATGGCTCAAACCACA
Found at i:22094619 original size:27 final size:27
Alignment explanation
Indices: 22094581--22094684 Score: 154
Period size: 27 Copynumber: 3.8 Consensus size: 27
22094571 TGAGGAGTAA
*
22094581 TCTGATTTTGGCTCGAAAGAGCATTAT
1 TCTGATTCTGGCTCGAAAGAGCATTAT
**
22094608 TCTGATTCTGGCTCGAAAGAGGGTTAT
1 TCTGATTCTGGCTCGAAAGAGCATTAT
22094635 TCTGATTCTGGCTCGAAAGAGCATTAT
1 TCTGATTCTGGCTCGAAAGAGCATTAT
* *
22094662 TTTGATTCTGGGCTCGTAAGAGC
1 TCTGATTCT-GGCTCGAAAGAGC
22094685 TAACCATTCT
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
27 57 0.83
28 12 0.17
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (27 bp):
TCTGATTCTGGCTCGAAAGAGCATTAT
Found at i:22094698 original size:24 final size:24
Alignment explanation
Indices: 22094666--22094735 Score: 115
Period size: 24 Copynumber: 2.9 Consensus size: 24
22094656 CATTATTTTG
22094666 ATTCTGGGCTCGTAAGAGCTAACC
1 ATTCTGGGCTCGTAAGAGCTAACC
22094690 ATTCTGGGCTCGTAAGAGCTAACC
1 ATTCTGGGCTCGTAAGAGCTAACC
*
22094714 -TATCTGGGCTCGTATGAGCTAA
1 AT-TCTGGGCTCGTAAGAGCTAA
22094736 TTTTGTCTAG
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 1 0.02
24 43 0.98
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (24 bp):
ATTCTGGGCTCGTAAGAGCTAACC
Found at i:22096743 original size:14 final size:15
Alignment explanation
Indices: 22096721--22096754 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
22096711 AATATTCAAC
22096721 ACAAAGTCCAA-ATT
1 ACAAAGTCCAAGATT
*
22096735 ACAATGTCCAAGATT
1 ACAAAGTCCAAGATT
22096750 ACAAA
1 ACAAA
22096755 ATAGCCCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.50, C:0.21, G:0.09, T:0.21
Consensus pattern (15 bp):
ACAAAGTCCAAGATT
Found at i:22098214 original size:29 final size:28
Alignment explanation
Indices: 22098169--22098385 Score: 136
Period size: 29 Copynumber: 7.4 Consensus size: 28
22098159 TTTTCTTTGA
*
22098169 AAATTACATTTAGAACCCCAAACTTT-CT
1 AAATTACATTT-TAACCCCAAACTTTCCT
*
22098197 CAAATTCACATTTTAACCCCTAAATTTTCC-
1 -AAATT-ACATTTTAACCCC-AAACTTTCCT
* * * *
22098227 AAAGTGT-CATTTTGACCCTTAAAATTTTCCA
1 AAA-T-TACATTTTAACCC--CAAACTTTCCT
* *
22098258 AAATTTCATTTTGACCCCCAAACTTTCCT
1 AAATTACATTTT-AACCCCAAACTTTCCT
* * *
22098287 AAAATACATTTTGACCCTCAAACCTTCCT
1 AAATTACATTTTAACCC-CAAACTTTCCT
* * *
22098316 AAAATCATATTTTAACCCTAAAC-TTCTCT
1 -AAATTACATTTTAACCCCAAACTTTC-CT
* * *
22098345 AAAATATATTTTAACCCCAAACTTTCCCA
1 AAATTACATTTTAACCCCAAACTTT-CCT
22098374 AAATTACATTTT
1 AAATTACATTTT
22098386 TACCTCTAAA
Statistics
Matches: 148, Mismatches: 25, Indels: 30
0.73 0.12 0.15
Matches are distributed among these distances:
28 25 0.17
29 72 0.49
30 43 0.29
31 8 0.05
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.36
Consensus pattern (28 bp):
AAATTACATTTTAACCCCAAACTTTCCT
Found at i:22098354 original size:28 final size:28
Alignment explanation
Indices: 22098277--22098368 Score: 107
Period size: 28 Copynumber: 3.2 Consensus size: 28
22098267 TTTGACCCCC
* *
22098277 AAACTT-TCCTAAAATACATTTTGACCCT
1 AAACTTCT-CTAAAATATATTTTAACCCT
22098305 CAAACCTTC-CTAAAATCATATTTTAACCCT
1 -AAA-CTTCTCTAAAAT-ATATTTTAACCCT
*
22098335 AAACTTCTCTAAAATATATTTTAACCCC
1 AAACTTCTCTAAAATATATTTTAACCCT
22098363 AAACTT
1 AAACTT
22098369 TCCCAAAATT
Statistics
Matches: 56, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
28 22 0.39
29 20 0.36
30 14 0.25
ACGTcount: A:0.38, C:0.26, G:0.01, T:0.35
Consensus pattern (28 bp):
AAACTTCTCTAAAATATATTTTAACCCT
Found at i:22103617 original size:20 final size:19
Alignment explanation
Indices: 22103592--22103659 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 19
22103582 GGGTTCGATG
22103592 AAGAAAAATAAATAAATAAA
1 AAGAAAAATAAA-AAATAAA
22103612 AAGAAAGAA-AAAAGAATAAA
1 AAGAAA-AATAAAA-AATAAA
*
22103632 AATAAAAATAAAAAAAGTAAA
1 AAGAAAAAT-AAAAAA-TAAA
22103653 AAGAAAA
1 AAGAAAA
22103660 GGAGAAGTCG
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
19 3 0.07
20 22 0.54
21 16 0.39
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.10
Consensus pattern (19 bp):
AAGAAAAATAAAAAATAAA
Found at i:22103636 original size:30 final size:31
Alignment explanation
Indices: 22103596--22103659 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
22103586 TCGATGAAGA
*
22103596 AAAATAAATAAATAA-AAAGAAAGAAAAAAGA
1 AAAATAAATAAA-AATAAAAAAAGAAAAAAGA
* *
22103627 ATAA-AAATAAAAATAAAAAAAGTAAAAAGA
1 AAAATAAATAAAAATAAAAAAAGAAAAAAGA
22103657 AAA
1 AAA
22103660 GGAGAAGTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
29 2 0.07
30 23 0.82
31 3 0.11
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.11
Consensus pattern (31 bp):
AAAATAAATAAAAATAAAAAAAGAAAAAAGA
Found at i:22104762 original size:49 final size:49
Alignment explanation
Indices: 22104706--22104845 Score: 163
Period size: 49 Copynumber: 2.9 Consensus size: 49
22104696 GAAGTGTGAT
** * * *
22104706 GGGAAAGGTTGAGGCCGCAACAACGAACCTGATACCATAAATATTTGAA
1 GGGAAAGGTTGAGGCCGCAACGGCGAACCTGGTACCATAAAAATTTAAA
* * * ***
22104755 GGGAAAGGTTGAGGCTGCAACGGTGAACCCGGTATTGTAAAAATTTAAA
1 GGGAAAGGTTGAGGCCGCAACGGCGAACCTGGTACCATAAAAATTTAAA
* *
22104804 GGGAAAGGTTGAGGTCGCAACGGCGAACCTGGTACCTTAAAA
1 GGGAAAGGTTGAGGCCGCAACGGCGAACCTGGTACCATAAAA
22104846 GACGAGATGG
Statistics
Matches: 73, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (49 bp):
GGGAAAGGTTGAGGCCGCAACGGCGAACCTGGTACCATAAAAATTTAAA
Found at i:22105231 original size:39 final size:39
Alignment explanation
Indices: 22105177--22105440 Score: 181
Period size: 39 Copynumber: 6.6 Consensus size: 39
22105167 GTTACATCAT
* * * *
22105177 CATCCAATCTCTTACCCTAATCATGGGGTAGATTGTAGC
1 CATCCAATCTCTTACCCTAATCATGAGGCAGATTGCAGA
* *
22105216 CATCCAATCTCTTACCCCAATCTTGAGGCAGATTGCAGA
1 CATCCAATCTCTTACCCTAATCATGAGGCAGATTGCAGA
** * * * * *
22105255 CATCTGATCTTTTACCCTGATCATAAGACAGATTG-AGT
1 CATCCAATCTCTTACCCTAATCATGAGGCAGATTGCAGA
* * * *
22105293 CATTCCAAACTTTTACCCCTAATCAAGAAGGGCCGATTGCAGCCA
1 CA-TCCAATCTCTTA-CCCTAATCATG-A-GGCAGATTGCAG--A
* *
22105338 TCATCCAATCTCTTACCCTAATCTTGAGGTAGATTGCAGA
1 -CATCCAATCTCTTACCCTAATCATGAGGCAGATTGCAGA
** * * * * *
22105378 CATCTGATCTTTTACCCTGATCATAAGACAGATTG-AGT
1 CATCCAATCTCTTACCCTAATCATGAGGCAGATTGCAGA
* *
22105416 CATTCCAAACTTTTACCCCTAATCA
1 CA-TCCAATCTCTTA-CCCTAATCA
22105441 AGAAGGGTCG
Statistics
Matches: 172, Mismatches: 43, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
38 8 0.05
39 105 0.61
40 17 0.10
41 1 0.01
42 17 0.10
43 3 0.02
44 9 0.05
45 10 0.06
46 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (39 bp):
CATCCAATCTCTTACCCTAATCATGAGGCAGATTGCAGA
Found at i:22105354 original size:45 final size:44
Alignment explanation
Indices: 22105174--22105500 Score: 175
Period size: 39 Copynumber: 7.9 Consensus size: 44
22105164 GAAGTTACAT
* * * * *
22105174 CATCATCCAATCTCTTA-CCCTAATCATG-GGGTAGATTGTAG-
1 CATCATCCAATCTTTTACCCCTAATCAAGAAGGCAGATTGCAGC
* **
22105215 C--CATCCAATCTCTTACCCC-AATCTTG-AGGCAGATTGCAG-
1 CATCATCCAATCTTTTACCCCTAATCAAGAAGGCAGATTGCAGC
** * * * *
22105254 -A-CATCTGATCTTTTA-CCCTGATC-ATAAGACAGATTG-AGT
1 CATCATCCAATCTTTTACCCCTAATCAAGAAGGCAGATTGCAGC
* *
22105293 CAT--TCCAAACTTTTACCCCTAATCAAGAAGGGCCGATTGCAGC
1 CATCATCCAATCTTTTACCCCTAATCAAGAA-GGCAGATTGCAGC
* ** *
22105336 CATCATCCAATCTCTTA-CCCTAATCTTG-AGGTAGATTGCAG-
1 CATCATCCAATCTTTTACCCCTAATCAAGAAGGCAGATTGCAGC
** * * * *
22105377 -A-CATCTGATCTTTTA-CCCTGATC-ATAAGACAGATTG-AGT
1 CATCATCCAATCTTTTACCCCTAATCAAGAAGGCAGATTGCAGC
*
22105416 CAT--TCCAAACTTTTACCCCTAATCAAGAAGGGTC-GATTGCAGC
1 CATCATCCAATCTTTTACCCCTAATCAAGAA-GG-CAGATTGCAGC
*
22105459 CATCATCCAATCTTTTACCCCTAAGTCAAGAGGCGCAGATTG
1 CATCATCCAATCTTTTACCCCTAA-TCAAGAAG-GCAGATTG
22105501 ACGACCATCC
Statistics
Matches: 217, Mismatches: 42, Indels: 49
0.70 0.14 0.16
Matches are distributed among these distances:
38 7 0.03
39 97 0.45
40 20 0.09
41 7 0.03
42 23 0.11
43 12 0.06
44 9 0.04
45 30 0.14
46 12 0.06
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (44 bp):
CATCATCCAATCTTTTACCCCTAATCAAGAAGGCAGATTGCAGC
Found at i:22105435 original size:123 final size:123
Alignment explanation
Indices: 22105216--22105479 Score: 492
Period size: 123 Copynumber: 2.1 Consensus size: 123
22105206 AGATTGTAGC
22105216 CATCCAATCTCTTACCCCAATCTTGAGGCAGATTGCAGACATCTGATCTTTTACCCTGATCATAA
1 CATCCAATCTCTTACCCCAATCTTGAGGCAGATTGCAGACATCTGATCTTTTACCCTGATCATAA
22105281 GACAGATTGAGTCATTCCAAACTTTTACCCCTAATCAAGAAGGGCCGATTGCAGCCAT
66 GACAGATTGAGTCATTCCAAACTTTTACCCCTAATCAAGAAGGGCCGATTGCAGCCAT
* *
22105339 CATCCAATCTCTTACCCTAATCTTGAGGTAGATTGCAGACATCTGATCTTTTACCCTGATCATAA
1 CATCCAATCTCTTACCCCAATCTTGAGGCAGATTGCAGACATCTGATCTTTTACCCTGATCATAA
*
22105404 GACAGATTGAGTCATTCCAAACTTTTACCCCTAATCAAGAAGGGTCGATTGCAGCCAT
66 GACAGATTGAGTCATTCCAAACTTTTACCCCTAATCAAGAAGGGCCGATTGCAGCCAT
*
22105462 CATCCAATCTTTTACCCC
1 CATCCAATCTCTTACCCC
22105480 TAAGTCAAGA
Statistics
Matches: 136, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 136 1.00
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (123 bp):
CATCCAATCTCTTACCCCAATCTTGAGGCAGATTGCAGACATCTGATCTTTTACCCTGATCATAA
GACAGATTGAGTCATTCCAAACTTTTACCCCTAATCAAGAAGGGCCGATTGCAGCCAT
Found at i:22105521 original size:25 final size:25
Alignment explanation
Indices: 22105485--22105535 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
22105475 ACCCCTAAGT
* *
22105485 CAAGAGGCGCAGATTGACGACCATC
1 CAAGAGGCGCAGATTGAAGACAATC
22105510 CAAGAGAG-GCAGATTGAAGACAATC
1 CAAGAG-GCGCAGATTGAAGACAATC
22105535 C
1 C
22105536 GATCTTTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.37, C:0.24, G:0.27, T:0.12
Consensus pattern (25 bp):
CAAGAGGCGCAGATTGAAGACAATC
Found at i:22105639 original size:41 final size:42
Alignment explanation
Indices: 22105586--22105701 Score: 141
Period size: 41 Copynumber: 2.8 Consensus size: 42
22105576 CATCCAACCA
22105586 TTTACCCTTAATCAAGAAAGGCAGATTGAAGATTCT-AATCT
1 TTTACCCTTAATCAAGAAAGGCAGATTGAAGATTCTCAATCT
* * *
22105627 TTTACCCCTAATCAAGAGAGGC-GAATTGAAGATT-TCGATCT
1 TTTACCCTTAATCAAGAAAGGCAG-ATTGAAGATTCTCAATCT
* * *
22105668 TTTATCCTTAATCAAGAAGGGTAGATTGAA-ATTC
1 TTTACCCTTAATCAAGAAAGGCAGATTGAAGATTC
22105702 GATCTCATAC
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
40 5 0.08
41 57 0.90
42 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32
Consensus pattern (42 bp):
TTTACCCTTAATCAAGAAAGGCAGATTGAAGATTCTCAATCT
Found at i:22105771 original size:46 final size:46
Alignment explanation
Indices: 22105703--22105803 Score: 121
Period size: 46 Copynumber: 2.2 Consensus size: 46
22105693 TTGAAATTCG
* * *
22105703 ATCTCATACCCTTGAGTTAAGAGGGACAGAACGAAGCCATCATCAA
1 ATCTCATACCCCTAAGTCAAGAGGGACAGAACGAAGCCATCATCAA
* ** * **
22105749 ATCTCATACCCCTAAGTCAAGAGGGGCAGATTGAAGTCATCATCCG
1 ATCTCATACCCCTAAGTCAAGAGGGACAGAACGAAGCCATCATCAA
22105795 ATCTCATAC
1 ATCTCATAC
22105804 TCTAGGTCAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.22
Consensus pattern (46 bp):
ATCTCATACCCCTAAGTCAAGAGGGACAGAACGAAGCCATCATCAA
Found at i:22106034 original size:48 final size:48
Alignment explanation
Indices: 22105952--22106043 Score: 121
Period size: 48 Copynumber: 1.9 Consensus size: 48
22105942 ACCAAATTCG
* * **
22105952 TCTTCCTGATGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCA
1 TCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGGTCA
* * *
22106000 TCTTCCTGATGAGCTACAGAGAATTAGACCAAATCGATGAAGCG
1 TCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCG
22106044 AAGCTCAATG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 37 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (48 bp):
TCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGGTCA
Found at i:22106129 original size:48 final size:49
Alignment explanation
Indices: 22106073--22106197 Score: 171
Period size: 48 Copynumber: 2.6 Consensus size: 49
22106063 CTTCGAACCC
* *
22106073 TTGTCTTCCTGATGAGATACTGAGAAGTGGATCAAAGC-AATAAAGCGG
1 TTGTCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAAATAAAGCGG
* * * *
22106121 TTGTCTTCCTGATGAGATACAAAGAAGTGGATTAAAACAAATGAGGCGG
1 TTGTCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAAATAAAGCGG
**
22106170 TAATCTTCCTGATGAGATACAGAGAAGT
1 TTGTCTTCCTGATGAGATACAGAGAAGT
22106198 AGACCAAATC
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
48 34 0.51
49 33 0.49
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.26
Consensus pattern (49 bp):
TTGTCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAAATAAAGCGG
Found at i:22106188 original size:49 final size:48
Alignment explanation
Indices: 22106076--22106197 Score: 163
Period size: 49 Copynumber: 2.5 Consensus size: 48
22106066 CGAACCCTTG
* * **
22106076 TCTTCCTGATGAGATACTGAGAAGTGGATCAAAGCAATAAAGCGGTTG
1 TCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAATAAAGCGGTAA
* * * *
22106124 TCTTCCTGATGAGATACAAAGAAGTGGATTAAAACAAATGAGGCGGTAA
1 TCTTCCTGATGAGATACAGAGAAGTGGATCAAAAC-AATAAAGCGGTAA
22106173 TCTTCCTGATGAGATACAGAGAAGT
1 TCTTCCTGATGAGATACAGAGAAGT
22106198 AGACCAAATC
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
48 31 0.48
49 33 0.52
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (48 bp):
TCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAATAAAGCGGTAA
Found at i:22106239 original size:173 final size:172
Alignment explanation
Indices: 22105949--22106324 Score: 617
Period size: 173 Copynumber: 2.2 Consensus size: 172
22105939 TAGACCAAAT
* * * *
22105949 TCGTCTTCCTGATGAGATATAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGC
1 TCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATGAAGCGGTAATCTTCCTGATGAGA
* * *
22106014 TACAGAGAATTAGACCAAATCGATGAAGCGAAGCTCAATGTGAGTGAAACTTCGAACCCTTGTCT
66 TACAGAGAAGTAGACCAAATCGATGAAGCGAAGCTCAATGTGAGTGAAACTTCGAACCCCTATCT
**
22106079 TCCTGATGAGATACTGAGAAGTGGATCAAAGCAATAAAGCGG
131 TCCTGATGAGATACTGAGAAGTGGATCAAAGCAATAAAGCAA
* * *
22106121 TTGTCTTCCTGATGAGATACAAAGAAGTGGATTAAAACAAATGAGGCGGTAATCTTCCTGATGAG
1 TCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAAC-AATGAAGCGGTAATCTTCCTGATGAG
22106186 ATACAGAGAAGTAGACCAAATCGATGAAGCGAAGCTCAATGTGAGTGAAACTTCGAACCCCTATC
65 ATACAGAGAAGTAGACCAAATCGATGAAGCGAAGCTCAATGTGAGTGAAACTTCGAACCCCTATC
* *
22106251 TTCCTGATGAGATACTGAGAAGTGGGTCAAAGCATTAAAGCAA
130 TTCCTGATGAGATACTGAGAAGTGGATCAAAGCAATAAAGCAA
22106294 TCGTCTTCCTGATGAGATACAGAGAAGTGGA
1 TCGTCTTCCTGATGAGATACAGAGAAGTGGA
22106325 CCAAATCTGT
Statistics
Matches: 187, Mismatches: 16, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
172 34 0.18
173 153 0.82
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (172 bp):
TCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATGAAGCGGTAATCTTCCTGATGAGA
TACAGAGAAGTAGACCAAATCGATGAAGCGAAGCTCAATGTGAGTGAAACTTCGAACCCCTATCT
TCCTGATGAGATACTGAGAAGTGGATCAAAGCAATAAAGCAA
Found at i:22106637 original size:161 final size:162
Alignment explanation
Indices: 22106297--22106646 Score: 524
Period size: 162 Copynumber: 2.2 Consensus size: 162
22106287 AAAGCAATCG
* * * * * * *
22106297 TCTTCCTGATGAGATACAGAGAAGTGGACCAAATCTGTCTTCTTGATGAGATACAGATAAGTTGA
1 TCTTCCTGATGAGATACTGAGAAGTGGACCAAATCTATCTTCCTAATAAGATACAGAGAAGTGGA
*
22106362 TTAAAACAAATGAGGCAGTCATTTTCCTGATGAGATACAGAGAAGTAGACCAAATCGATAAAGCG
66 TTAAAACAAATGAGGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCGATAAAGCG
* * * *
22106427 AAGCTCAATGTGAGTGAAATTTTGTACCCCTA
131 AAGCTCAATGTGAGTAAAACTTTGAACCCCCA
*
22106459 TCTT-CTGGATGAGATACTGAGAAGTGGACCAAATCTATCTTCCTAATAAGATATAGAGAAGTGG
1 TCTTCCT-GATGAGATACTGAGAAGTGGACCAAATCTATCTTCCTAATAAGATACAGAGAAGTGG
** * *
22106523 ATTAAAACAAATGAGGTGGTCATCTTCTTGATGAGATACA-AGAAGTAGACCAAATCGATGAAGC
65 ATTAAAACAAATGAGGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCGATAAAGC
22106587 GAAGCTCAATGTGAGTAAAACTTTGAACCCCCA
130 GAAGCTCAATGTGAGTAAAACTTTGAACCCCCA
22106620 TCTTCCTGATGAGATACTGAGAAGTGG
1 TCTTCCTGATGAGATACTGAGAAGTGG
22106647 GTCGAAGCAA
Statistics
Matches: 169, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
161 78 0.46
162 91 0.54
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (162 bp):
TCTTCCTGATGAGATACTGAGAAGTGGACCAAATCTATCTTCCTAATAAGATACAGAGAAGTGGA
TTAAAACAAATGAGGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCGATAAAGCG
AAGCTCAATGTGAGTAAAACTTTGAACCCCCA
Found at i:22108450 original size:30 final size:29
Alignment explanation
Indices: 22108400--22108834 Score: 394
Period size: 30 Copynumber: 14.6 Consensus size: 29
22108390 ACTTTCTTTG
** *
22108400 AAAATTACATTTAAAACCCTAAACTTTCTC
1 AAAATTACATTTTGACCCCTAAACTTT-TC
* *
22108430 AAAATCACAGTTTGACCCCTAAACTTTTCC
1 AAAATTACATTTTGACCCCTAAACTTTT-C
* *
22108460 AAAATTTCATTTTAACCCCTAAACTTTTCC
1 AAAATTACATTTTGACCCCTAAACTTTT-C
* *
22108490 AAAATTTCATTTTGACCCCCAAACTTTTCC
1 AAAATTACATTTTGACCCCTAAACTTTT-C
*
22108520 AAATTTACATTTTGACCCCTAAACTTTTCC
1 AAAATTACATTTTGACCCCTAAACTTTT-C
*
22108550 AAAATTTCATTTTGACCCCTAAACTTTTCC
1 AAAATTACATTTTGACCCCTAAACTTTT-C
* * *
22108580 AAAATTTCATTTTAACTCCC-AAACTTTCC
1 AAAATTACATTTTGAC-CCCTAAACTTTTC
* * *
22108609 TAAAATCACATTTTAACCCTTAAACTTTCTC
1 -AAAATTACATTTTGACCCCTAAACTTT-TC
* * * **
22108640 AAACTTACATTTT-AACCCTAAACATCAC
1 AAAATTACATTTTGACCCCTAAACTTTTC
22108668 TAAAATTACATTTTGACCCCTAAACATTATT-
1 -AAAATTACATTTTGACCCCTAAAC-TT-TTC
*
22108699 GAAATTACATTTTGACCCCTCAAACCTTTTCC
1 AAAATTACATTTTGACCCCT-AAA-CTTTT-C
* * *
22108731 AAAATCACATTTT-AACCCTAAACTTCTC
1 AAAATTACATTTTGACCCCTAAACTTTTC
* *
22108759 TAAAATCACATTTT-AACCCTAAACTTTCTC
1 -AAAATTACATTTTGACCCCTAAACTTT-TC
* * *
22108789 AAATTTACATTTTTACCCCTAAATTTTTC
1 AAAATTACATTTTGACCCCTAAACTTTTC
22108818 TAAAATTACATTTTGAC
1 -AAAATTACATTTTGAC
22108835 TCCGTATTCT
Statistics
Matches: 342, Mismatches: 46, Indels: 34
0.81 0.11 0.08
Matches are distributed among these distances:
28 2 0.01
29 67 0.20
30 246 0.72
31 15 0.04
32 12 0.04
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.37
Consensus pattern (29 bp):
AAAATTACATTTTGACCCCTAAACTTTTC
Found at i:22108493 original size:60 final size:59
Alignment explanation
Indices: 22108400--22108831 Score: 439
Period size: 60 Copynumber: 7.2 Consensus size: 59
22108390 ACTTTCTTTG
* * * *
22108400 AAAATTACATTTAAAACCCTAAACTTTCTCAAAATCACAGTTTGACCCCTAAACTTTTCC
1 AAAATTACATTTTAACCCCTAAACTTTC-CAAAATTACATTTTGACCCCTAAACTTTTCC
* * *
22108460 AAAATTTCATTTTAACCCCTAAACTTTTCCAAAATTTCATTTTGACCCCCAAACTTTTCC
1 AAAATTACATTTTAACCCCTAAAC-TTTCCAAAATTACATTTTGACCCCTAAACTTTTCC
* * *
22108520 AAATTTACATTTTGACCCCTAAACTTTTCCAAAATTTCATTTTGACCCCTAAACTTTTCC
1 AAAATTACATTTTAACCCCTAAAC-TTTCCAAAATTACATTTTGACCCCTAAACTTTTCC
* * * *
22108580 AAAATTTCATTTTAACTCCC-AAACTTTCCTAAAATCACATTTTAACCCTTAAAC-TTTCTC
1 AAAATTACATTTTAAC-CCCTAAACTTTCC-AAAATTACATTTTGACCCCTAAACTTTTC-C
* *
22108640 AAACTTACATTTTAA-CCCTAAAC-ATCACTAAAATTACATTTTGACCCCTAAACATTATT--
1 AAAATTACATTTTAACCCCTAAACTTTC-C-AAAATTACATTTTGACCCCTAAAC-TT-TTCC
* * * * * *
22108699 GAAATTACATTTTGACCCCTCAAACCTTTTCCAAAATCACATTTT-AACCCTAAACTTCTCT
1 AAAATTACATTTTAACCCCT-AAA-C-TTTCCAAAATTACATTTTGACCCCTAAACTTTTCC
* * * * *
22108760 AAAATCACATTTTAA-CCCTAAACTTTCTCAAATTTACATTTTTACCCCTAAATTTTTCT
1 AAAATTACATTTTAACCCCTAAACTTTC-CAAAATTACATTTTGACCCCTAAACTTTTCC
22108819 AAAATTACATTTT
1 AAAATTACATTTT
22108832 GACTCCGTAT
Statistics
Matches: 314, Mismatches: 40, Indels: 37
0.80 0.10 0.09
Matches are distributed among these distances:
57 4 0.01
58 18 0.06
59 77 0.25
60 165 0.53
61 32 0.10
62 15 0.05
63 1 0.00
64 2 0.01
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.37
Consensus pattern (59 bp):
AAAATTACATTTTAACCCCTAAACTTTCCAAAATTACATTTTGACCCCTAAACTTTTCC
Done.