Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 66 of 135
Found at i:22113320 original size:49 final size:49
Alignment explanation
Indices: 22113258--22113355 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
22113248 CATGGCGAGA
* *
22113258 GAAGACTATATAGTGTAAGGCCTAGTCGTATTGCTATCACATGGCAAAT
1 GAAGACTATATAGTGTAAGGCCTAATCGTATTGCTATCACATGGAAAAT
22113307 GAAGACTATATAGTGTAAGGCCTAATCGTATTGCTATCACATGGAAAAT
1 GAAGACTATATAGTGTAAGGCCTAATCGTATTGCTATCACATGGAAAAT
22113356 AAAAACCACA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (49 bp):
GAAGACTATATAGTGTAAGGCCTAATCGTATTGCTATCACATGGAAAAT
Found at i:22116384 original size:26 final size:26
Alignment explanation
Indices: 22116354--22116405 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22116344 ACAACTTGAC
* *
22116354 ATTTTTTTTC-TAATTTGGTACTTAA
1 ATTTTTTTACTTAATTTGGTACATAA
22116379 ATTTTTTTACTTAATTTGGTACATAA
1 ATTTTTTTACTTAATTTGGTACATAA
22116405 A
1 A
22116406 CTTAACACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.29, C:0.08, G:0.08, T:0.56
Consensus pattern (26 bp):
ATTTTTTTACTTAATTTGGTACATAA
Found at i:22116478 original size:60 final size:58
Alignment explanation
Indices: 22116346--22116503 Score: 165
Period size: 60 Copynumber: 2.7 Consensus size: 58
22116336 ATTTTAATAC
* * * ** *
22116346 AACTTGACATTTTTTTTCTAATTTGGTACTTAAA-TTTTTTTACTTAATTTGGTACATA
1 AACTTGACA-TTTTTTCCTAATTTGATACCTAAACTTTTTTTACCCAATTTGATACATA
* * * *
22116404 AACTTAACACTTTTTCCTAATTTGATACCTAAACTTTTTTTGGACCCAATTTGATACTTG
1 AACTTGACATTTTTTCCTAATTTGATACCTAAACTTTTTTT--ACCCAATTTGATACATA
* * *
22116464 AAGTTGACATTTTTTCGTAATTTGATACCTAAGCTTTTTT
1 AACTTGACATTTTTTCCTAATTTGATACCTAAACTTTTTT
22116504 AGATTCAATT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
57 20 0.24
58 15 0.18
60 47 0.57
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49
Consensus pattern (58 bp):
AACTTGACATTTTTTCCTAATTTGATACCTAAACTTTTTTTACCCAATTTGATACATA
Found at i:22120604 original size:21 final size:21
Alignment explanation
Indices: 22120578--22120632 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
22120568 ATGTGCAAAT
*
22120578 TTCTACTGATACAAGTAACAG
1 TTCTACCGATACAAGTAACAG
* *
22120599 TTCTACCGATACGAGTGACAG
1 TTCTACCGATACAAGTAACAG
22120620 TTCTACCGATACA
1 TTCTACCGATACA
22120633 TGTCTTACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (21 bp):
TTCTACCGATACAAGTAACAG
Found at i:22121328 original size:40 final size:40
Alignment explanation
Indices: 22121280--22121369 Score: 164
Period size: 40 Copynumber: 2.3 Consensus size: 40
22121270 TTCATGTGTC
22121280 TTCC-TTTTAACAATCTTATGCTCTACCGAGTCATAAGTA
1 TTCCTTTTTAACAATCTTATGCTCTACCGAGTCATAAGTA
*
22121319 TTCCTTTTTAACAATCTTATGCTCTACCGAGTCATAAGTC
1 TTCCTTTTTAACAATCTTATGCTCTACCGAGTCATAAGTA
22121359 TTCCTTTTTAA
1 TTCCTTTTTAA
22121370 TTCTCACGCT
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 4 0.08
40 45 0.92
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (40 bp):
TTCCTTTTTAACAATCTTATGCTCTACCGAGTCATAAGTA
Found at i:22121399 original size:39 final size:40
Alignment explanation
Indices: 22121346--22121446 Score: 114
Period size: 41 Copynumber: 2.5 Consensus size: 40
22121336 TATGCTCTAC
* * * *
22121346 CGAGTCATAAGTCTTCCTTTTTA-ATTCTCACGCTCCTTT
1 CGAGTCATGAGTCTTCCTTTTCACATTCTCACGCTCATCT
* **
22121385 CGAGTCATGGGTCTTCCTTTATCACATTCTCATTCTCATCT
1 CGAGTCATGAGTCTTCCTTT-TCACATTCTCACGCTCATCT
*
22121426 CGAGACATGAGTCTTCCTTTT
1 CGAGTCATGAGTCTTCCTTTT
22121447 AAACATCAGG
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
39 18 0.35
40 3 0.06
41 30 0.59
ACGTcount: A:0.18, C:0.28, G:0.13, T:0.42
Consensus pattern (40 bp):
CGAGTCATGAGTCTTCCTTTTCACATTCTCACGCTCATCT
Found at i:22130637 original size:29 final size:28
Alignment explanation
Indices: 22130583--22130649 Score: 91
Period size: 29 Copynumber: 2.4 Consensus size: 28
22130573 GGCATAACAA
*
22130583 TTCCTTGA-TTCTCTTCTGTTGTAGTGG
1 TTCCTTGATTTCTCTTCTGTTGAAGTGG
* *
22130610 TTCCTTGATTTTTGCTTCTGTTGAAGTGT
1 TTCCTTGATTTCT-CTTCTGTTGAAGTGG
22130639 TTCCTTGATTT
1 TTCCTTGATTT
22130650 ATGATTCCTG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
27 8 0.23
28 3 0.09
29 24 0.69
ACGTcount: A:0.09, C:0.16, G:0.19, T:0.55
Consensus pattern (28 bp):
TTCCTTGATTTCTCTTCTGTTGAAGTGG
Found at i:22132577 original size:42 final size:42
Alignment explanation
Indices: 22132480--22132580 Score: 175
Period size: 42 Copynumber: 2.4 Consensus size: 42
22132470 TTAATGAATT
* *
22132480 TAATATTTATCTAAATATTAATATGAGATATTAAATTTAATT
1 TAATATTTATCTAGATATTAATATGAGATATTAAATTTAATA
*
22132522 TAATGTTTATCTAGATATTAATATGAGATATTAAATTTAATA
1 TAATATTTATCTAGATATTAATATGAGATATTAAATTTAATA
22132564 TAATATTTATCTAGATA
1 TAATATTTATCTAGATA
22132581 ATATTTTATT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.47
Consensus pattern (42 bp):
TAATATTTATCTAGATATTAATATGAGATATTAAATTTAATA
Found at i:22146052 original size:3 final size:3
Alignment explanation
Indices: 22146046--22146076 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
22146036 TGATGAGATT
*
22146046 GAA GAA GAA GAA GAA GAA GAA GAA AAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
22146077 CCCAACAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:22148578 original size:24 final size:24
Alignment explanation
Indices: 22148512--22148577 Score: 123
Period size: 24 Copynumber: 2.7 Consensus size: 24
22148502 CTCCTTGTAA
22148512 TTTAGGTTTAGTTATTTTCTTTTC
1 TTTAGGTTTAGTTATTTTCTTTTC
22148536 TTTAGGTTTAGTTATTTTCTTTTC
1 TTTAGGTTTAGTTATTTTCTTTTC
22148560 TTTAGGTTTTAGTTATTT
1 TTTAGG-TTTAGTTATTT
22148578 CATTCTTGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
24 30 0.73
25 11 0.27
ACGTcount: A:0.14, C:0.06, G:0.14, T:0.67
Consensus pattern (24 bp):
TTTAGGTTTAGTTATTTTCTTTTC
Found at i:22149844 original size:21 final size:21
Alignment explanation
Indices: 22149820--22149862 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
22149810 ATATTTGCCA
22149820 ACAGATCATAAATAAGGTTTC
1 ACAGATCATAAATAAGGTTTC
*
22149841 ACAGATCATAGATAAGGTTTC
1 ACAGATCATAAATAAGGTTTC
22149862 A
1 A
22149863 AGTGAGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (21 bp):
ACAGATCATAAATAAGGTTTC
Found at i:22157458 original size:8 final size:9
Alignment explanation
Indices: 22157403--22157458 Score: 51
Period size: 9 Copynumber: 6.3 Consensus size: 9
22157393 AAAATCTTTT
*
22157403 AAAAAGATA
1 AAAAATATA
*
22157412 AAAAATACA
1 AAAAATATA
22157421 AAAAATATA
1 AAAAATATA
***
22157430 AACCTTATA
1 AAAAATATA
*
22157439 AAAAATACA
1 AAAAATATA
22157448 AAAAAT-TA
1 AAAAATATA
22157456 AAA
1 AAA
22157459 TATGTTAGAA
Statistics
Matches: 36, Mismatches: 11, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
8 4 0.11
9 32 0.89
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.18
Consensus pattern (9 bp):
AAAAATATA
Found at i:22157561 original size:29 final size:29
Alignment explanation
Indices: 22157502--22157564 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
22157492 ACTAAAATTA
* * * * *
22157502 TAAAAATTATTATATATTGTAACATATTG
1 TAAAAATTATTAGAAATTGTAAAAGAATG
*
22157531 TAAAAATTATTAGAAATTTTAAAAGAATG
1 TAAAAATTATTAGAAATTGTAAAAGAATG
22157560 TAAAA
1 TAAAA
22157565 GGATTGTTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (29 bp):
TAAAAATTATTAGAAATTGTAAAAGAATG
Found at i:22158341 original size:9 final size:9
Alignment explanation
Indices: 22158327--22158367 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
22158317 AAAAATAGTA
22158327 AATTTTTAT
1 AATTTTTAT
*
22158336 AATTTTAAT
1 AATTTTTAT
*
22158345 ACTTTTT-T
1 AATTTTTAT
22158353 AA-TTTTAT
1 AATTTTTAT
22158361 AATTTTT
1 AATTTTT
22158368 TTGTCAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
7 4 0.15
8 5 0.19
9 17 0.65
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (9 bp):
AATTTTTAT
Found at i:22158345 original size:34 final size:35
Alignment explanation
Indices: 22158279--22158350 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
22158269 GTAAATATAA
* *
22158279 TTTATAAAATATTAAATATTAAAATTTCTAATA-T
1 TTTAAAAAATAGTAAATATTAAAATTTCTAATACT
* *
22158313 TTTAAAAAATAGTAAATTTTTATAATTT-TAATACT
1 TTTAAAAAATAGTAAA-TATTAAAATTTCTAATACT
22158348 TTT
1 TTT
22158351 TTAATTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 19 0.59
35 13 0.41
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (35 bp):
TTTAAAAAATAGTAAATATTAAAATTTCTAATACT
Found at i:22158367 original size:17 final size:16
Alignment explanation
Indices: 22158325--22158388 Score: 56
Period size: 17 Copynumber: 3.7 Consensus size: 16
22158315 TAAAAAATAG
*
22158325 TAAATTTTTATAATTT
1 TAAATTTTTTTAATTT
*
22158341 TAATACTTTTTTAATTT
1 TAA-ATTTTTTTAATTT
22158358 TATAATTTTTTTGTCAATTT
1 TA-AA-TTTTTT-T-AATTT
*
22158378 TACATTTTTTT
1 TAAATTTTTTT
22158389 TCAGTTTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
16 3 0.08
17 15 0.38
18 12 0.31
19 2 0.05
20 7 0.18
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.66
Consensus pattern (16 bp):
TAAATTTTTTTAATTT
Found at i:22158378 original size:20 final size:18
Alignment explanation
Indices: 22158347--22158399 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
22158337 ATTTTAATAC
22158347 TTTTTT-AATTTTATAATT
1 TTTTTTCAATTTTA-AATT
*
22158365 TTTTTGTCAATTTTACATT
1 TTTTT-TCAATTTTAAATT
*
22158384 TTTTTTCAGTTTTAAA
1 TTTTTTCAATTTTAAA
22158400 GATTTTTAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 14 0.47
19 9 0.30
20 7 0.23
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.66
Consensus pattern (18 bp):
TTTTTTCAATTTTAAATT
Found at i:22160099 original size:15 final size:16
Alignment explanation
Indices: 22160074--22160118 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
22160064 ATTATCATTT
*
22160074 ATTAATGAAAATGATC
1 ATTAATTAAAATGATC
22160090 -TTAATTAAAAT-ATC
1 ATTAATTAAAATGATC
22160104 ATTTAA-TAAAATGAT
1 A-TTAATTAAAATGAT
22160119 TAAATTTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
14 3 0.12
15 16 0.64
16 6 0.24
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (16 bp):
ATTAATTAAAATGATC
Found at i:22164084 original size:19 final size:18
Alignment explanation
Indices: 22164049--22164084 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22164039 CCGAATGTTT
*
22164049 CCCATTTCTCTAATTTTA
1 CCCATTTCTATAATTTTA
22164067 CCCATTTCTATCAATTTT
1 CCCATTTCTAT-AATTTT
22164085 TGTTCATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.22, C:0.28, G:0.00, T:0.50
Consensus pattern (18 bp):
CCCATTTCTATAATTTTA
Found at i:22171615 original size:21 final size:20
Alignment explanation
Indices: 22171591--22171629 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
22171581 ATTATTGAAC
22171591 TATATCATTTTTATGAATAAA
1 TATATCATTTTTAT-AATAAA
*
22171612 TATATTATTTTTATAATA
1 TATATCATTTTTATAATA
22171630 CATAGCATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (20 bp):
TATATCATTTTTATAATAAA
Found at i:22174440 original size:29 final size:29
Alignment explanation
Indices: 22174346--22174556 Score: 160
Period size: 30 Copynumber: 7.2 Consensus size: 29
22174336 ATTTGGATCA
* *
22174346 CTAAACTTCTCCAAAATTACATTTTAGCCC
1 CTAAACTTTTTCAAAATTACATTTTA-CCC
* * * *
22174376 CTTAACTTATCCAAAATTGCATTTTGA--C
1 CTAAACTTTTTCAAAATTACATTTT-ACCC
*
22174404 CTAGAACTTTTTCAAAATTGCATTTTACCC
1 CTA-AACTTTTTCAAAATTACATTTTACCC
* * *
22174434 CTAAAC-TTTCCAAAAATCATATTTTAACCC
1 CTAAACTTTTTC-AAAATTACATTTT-ACCC
* ** *
22174464 CCAAAC-TTTTCTAAAATCGCATTTTAACC
1 CTAAACTTTTTC-AAAATTACATTTTACCC
** *
22174493 CTAATTTTTTTCAAAATTACATTTTGACAC
1 CTAAACTTTTTCAAAATTACATTTT-ACCC
* *
22174523 CTAAACTTTCTCAAAATTACATTTTATCC
1 CTAAACTTTTTCAAAATTACATTTTACCC
22174552 CTAAA
1 CTAAA
22174557 TTCTTCGAAA
Statistics
Matches: 145, Mismatches: 28, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
28 8 0.06
29 57 0.39
30 79 0.54
31 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.38
Consensus pattern (29 bp):
CTAAACTTTTTCAAAATTACATTTTACCC
Found at i:22174471 original size:59 final size:58
Alignment explanation
Indices: 22174408--22174556 Score: 147
Period size: 59 Copynumber: 2.5 Consensus size: 58
22174398 TTTGACCTAG
* * *
22174408 AACTTTTTCAAAATTGCATTTTACCCCTAAACTTTCCAAAAATCATATTTTAACCCCCA
1 AACTTTTTCAAAATTGCATTTTAACCCTAAACTTTCC-AAAATCACATTTTAACACCCA
* ** * * * *
22174467 AAC-TTTTCTAAAATCGCATTTTAACCCTAATTTTTTTCAAAATTACATTTTGACACCTA
1 AACTTTTTC-AAAATTGCATTTTAACCCTAA-ACTTTCCAAAATCACATTTTAACACCCA
* * *
22174526 AACTTTCTCAAAATTACATTTTATCCCTAAA
1 AACTTTTTCAAAATTGCATTTTAACCCTAAA
22174557 TTCTTCGAAA
Statistics
Matches: 72, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
58 5 0.07
59 59 0.82
60 8 0.11
ACGTcount: A:0.36, C:0.23, G:0.02, T:0.39
Consensus pattern (58 bp):
AACTTTTTCAAAATTGCATTTTAACCCTAAACTTTCCAAAATCACATTTTAACACCCA
Found at i:22180930 original size:49 final size:49
Alignment explanation
Indices: 22180808--22180935 Score: 125
Period size: 49 Copynumber: 2.6 Consensus size: 49
22180798 TAAAGACATT
*
22180808 AAGGG-AAGGATTGAGGCTGCAATGGCAAACCCGGTACCTCAGAAGATGTG
1 AAGGGAAAGG-TTGAGGCTGCAACGGCAAACCCGGTACCT-AGAAGATGTG
* * ** ** * *
22180858 AGGGGAAAAGTTGAGGCCACAACGGTGAACTCGGTACC-ATGAAGATTTG
1 AAGGGAAAGGTTGAGGCTGCAACGGCAAACCCGGTACCTA-GAAGATGTG
*
22180907 AAGGGAAAGGTTGAGGCTGCAACGACAAA
1 AAGGGAAAGGTTGAGGCTGCAACGGCAAA
22180936 TCTAGTACTT
Statistics
Matches: 60, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
48 1 0.02
49 30 0.50
50 26 0.43
51 3 0.05
ACGTcount: A:0.34, C:0.16, G:0.34, T:0.16
Consensus pattern (49 bp):
AAGGGAAAGGTTGAGGCTGCAACGGCAAACCCGGTACCTAGAAGATGTG
Found at i:22181295 original size:41 final size:41
Alignment explanation
Indices: 22181236--22181603 Score: 407
Period size: 41 Copynumber: 8.8 Consensus size: 41
22181226 ATCATCATCT
22181236 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
1 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
* * *
22181277 AATCTTTTACCCTTAATCAAGAAAGGCAGATTGAAGATTTC
1 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
* * *
22181318 GGTCTTTTACCCTTAATCAAGAAGGCCAGATTGAAGATTTC
1 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
* * *
22181359 AGTCTTTTACCCTTAATCAAGAAAGGCAAATTGAAGATTTC
1 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
*
22181400 GGTCTTTTACCC-TAATCAAGAAGGGCAGATTGAAGATTCC
1 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
* * * * *
22181440 AGTCTTTTACCTTTAACCAATAATGGTAGATTGAAGACTCCAATCTTTC
1 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGA-T----TC---C
* * *
22181489 GGTCTTTTATCCTTAATCAAGAAGGGTAGATTGAAGATTCC
1 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
* * *
22181530 AGTCTTTT-CCCTTTAATCAATAAGGGTAGATTGAAGACTCC
1 AGTCTTTTACCC-TTAATCAAGAAGGGCAGATTGAAGATTCC
* * * * *
22181571 AATCTTATACCCCTAATCAAGAGGGGTAGATTG
1 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTG
22181604 TAAATCTTTT
Statistics
Matches: 280, Mismatches: 36, Indels: 22
0.83 0.11 0.07
Matches are distributed among these distances:
40 37 0.13
41 202 0.72
42 4 0.01
44 2 0.01
46 2 0.01
48 1 0.00
49 32 0.11
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (41 bp):
AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
Found at i:22181551 original size:90 final size:89
Alignment explanation
Indices: 22181396--22181576 Score: 308
Period size: 90 Copynumber: 2.0 Consensus size: 89
22181386 AAATTGAAGA
22181396 TTTCGGTCTTTTACCCTAATCAAGAAGGGCAGATTGAAGATTCCAGTCTTTTACCTTTAACCAAT
1 TTTCGGTCTTTTACCCTAATCAAGAAGGGCAGATTGAAGATTCCAGTCTTTTACCTTTAACCAAT
*
22181461 AATGGTAGATTGAAGACTCCAATC
66 AAGGGTAGATTGAAGACTCCAATC
* * * *
22181485 TTTCGGTCTTTTATCCTTAATCAAGAAGGGTAGATTGAAGATTCCAGTCTTTTCCCTTTAATCAA
1 TTTCGGTCTTTTA-CCCTAATCAAGAAGGGCAGATTGAAGATTCCAGTCTTTTACCTTTAACCAA
22181550 TAAGGGTAGATTGAAGACTCCAATC
65 TAAGGGTAGATTGAAGACTCCAATC
22181575 TT
1 TT
22181577 ATACCCCTAA
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
89 13 0.15
90 73 0.85
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (89 bp):
TTTCGGTCTTTTACCCTAATCAAGAAGGGCAGATTGAAGATTCCAGTCTTTTACCTTTAACCAAT
AAGGGTAGATTGAAGACTCCAATC
Found at i:22182877 original size:11 final size:10
Alignment explanation
Indices: 22182861--22182895 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 10
22182851 TCAAATGTTT
22182861 TAATAAATAA
1 TAATAAATAA
22182871 GTAATAAATACA
1 -TAATAAATA-A
22182883 TAATAAATAA
1 TAATAAATAA
22182893 TAA
1 TAA
22182896 ATTCGAAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 4 0.17
11 18 0.78
12 1 0.04
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (10 bp):
TAATAAATAA
Found at i:22183850 original size:59 final size:60
Alignment explanation
Indices: 22183778--22183977 Score: 205
Period size: 59 Copynumber: 3.4 Consensus size: 60
22183768 TTGACCATTG
* * * * *
22183778 AACTTCTCC-AAAATTGCATTTTAGCCTCTTAACTTTTCTAAAATTATATTTTAACCCTA
1 AACTTTTCCTAAAATTACATTTTAGCCTCTAAACTTTTCCAAAATTACATTTTAACCCTA
* * * * *
22183837 AACTTTTCC-AAAATTGCATTTTAACCCCTAAACTTTCCCAAAATCACATTTTAACCC-A
1 AACTTTTCCTAAAATTACATTTTAGCCTCTAAACTTTTCCAAAATTACATTTTAACCCTA
* * * *
22183895 CAACCTTTCCTAAAATCACATTTT-GACCT-TAAATTTTTCCAAAATTACATTTTGACCCTTA
1 -AACTTTTCCTAAAATTACATTTTAG-CCTCTAAACTTTTCCAAAATTACATTTTAACCC-TA
22183956 AAC-TTTCCTAAAATTACATTTT
1 AACTTTTCCTAAAATTACATTTT
22183978 GCCCCAAATT
Statistics
Matches: 118, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
58 1 0.01
59 100 0.85
60 16 0.14
61 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (60 bp):
AACTTTTCCTAAAATTACATTTTAGCCTCTAAACTTTTCCAAAATTACATTTTAACCCTA
Found at i:22183978 original size:30 final size:29
Alignment explanation
Indices: 22183747--22183978 Score: 184
Period size: 30 Copynumber: 7.8 Consensus size: 29
22183737 AAGAGCCCCC
** *
22183747 AAACTCTTCCAAAATTTTATTTTGACCATT
1 AAACT-TTCCAAAATTACATTTTGACCCTT
* *
22183777 GAACTTCTCCAAAATTGCATTTT-AGCCTCTT
1 AAACTT-TCCAAAATTACATTTTGA-CC-CTT
* * *
22183808 -AACTTTTCTAAAATTATATTTTAACCC-T
1 AAAC-TTTCCAAAATTACATTTTGACCCTT
* * *
22183836 AAACTTTTCCAAAATTGCATTTTAACCCCT
1 AAAC-TTTCCAAAATTACATTTTGACCCTT
* * **
22183866 AAACTTTCCCAAAATCACATTTTAACCCAC
1 AAACTTT-CCAAAATTACATTTTGACCCTT
* *
22183896 AACCTTTCCTAAAATCACATTTTGA-CCTT
1 AAACTTTCC-AAAATTACATTTTGACCCTT
*
22183925 AAATTTTTCCAAAATTACATTTTGACCCTT
1 AAA-CTTTCCAAAATTACATTTTGACCCTT
22183955 AAACTTTCCTAAAATTACATTTTG
1 AAACTTTCC-AAAATTACATTTTG
22183979 CCCCAAATTC
Statistics
Matches: 168, Mismatches: 22, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
28 1 0.01
29 55 0.33
30 107 0.64
31 5 0.03
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (29 bp):
AAACTTTCCAAAATTACATTTTGACCCTT
Found at i:22183978 original size:59 final size:59
Alignment explanation
Indices: 22183747--22183978 Score: 202
Period size: 59 Copynumber: 3.9 Consensus size: 59
22183737 AAGAGCCCCC
* ** * * * *
22183747 AAACTCTTCCAAAATTTTATTTTGACCATTGAACTTCTCCAAAATTGCATTTT-AGCCTCTT
1 AAACTTTTCCAAAATTACATTTTAACCCTTAAACTT-TCCAAAATTACATTTTGA-CC-CTT
* * * * *
22183808 -AACTTTTCTAAAATTATATTTTAACCC-TAAACTTTTCCAAAATTGCATTTTAACCCCT
1 AAACTTTTCCAAAATTACATTTTAACCCTTAAAC-TTTCCAAAATTACATTTTGACCCTT
* * ** * *
22183866 AAACTTTCCCAAAATCACATTTTAACCCACAACCTTTCCTAAAATCACATTTTGA-CCTT
1 AAACTTTTCCAAAATTACATTTTAACCCTTAAACTTTCC-AAAATTACATTTTGACCCTT
* *
22183925 AAATTTTTCCAAAATTACATTTTGACCCTTAAACTTTCCTAAAATTACATTTTG
1 AAACTTTTCCAAAATTACATTTTAACCCTTAAACTTTCC-AAAATTACATTTTG
22183979 CCCCAAATTC
Statistics
Matches: 141, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
58 2 0.01
59 99 0.70
60 40 0.28
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (59 bp):
AAACTTTTCCAAAATTACATTTTAACCCTTAAACTTTCCAAAATTACATTTTGACCCTT
Found at i:22188187 original size:27 final size:27
Alignment explanation
Indices: 22188157--22188238 Score: 73
Period size: 26 Copynumber: 3.1 Consensus size: 27
22188147 GCTCTTTGAA
22188157 CCCAGAACAGAGTTTATCTCTTACGAG
1 CCCAGAACAGAGTTTATCTCTTACGAG
* * *
22188184 CCCAGAA-AAAATTTAGCTCATT-CGAG
1 CCCAGAACAGAGTTTATCTC-TTACGAG
*
22188210 CCCAG-ACAGAG-TAATACTCTTATCGAG
1 CCCAGAACAGAGTTTAT-CTCTTA-CGAG
22188237 CC
1 CC
22188239 AGAGTTTAGA
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
25 5 0.12
26 23 0.53
27 15 0.35
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (27 bp):
CCCAGAACAGAGTTTATCTCTTACGAG
Found at i:22188522 original size:19 final size:19
Alignment explanation
Indices: 22188483--22188518 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
22188473 CTAATTCAAC
22188483 ATGAAATTCAAGTCATTTT
1 ATGAAATTCAAGTCATTTT
22188502 ATGAAATT-AAGTC-TTTT
1 ATGAAATTCAAGTCATTTT
22188519 TTATTTTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 5 0.29
19 8 0.47
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (19 bp):
ATGAAATTCAAGTCATTTT
Found at i:22190675 original size:14 final size:12
Alignment explanation
Indices: 22190643--22190667 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22190633 TCTTTACGCT
22190643 TCTTATCGAAGG
1 TCTTATCGAAGG
22190655 TCTTATCGAAGG
1 TCTTATCGAAGG
22190667 T
1 T
22190668 ATCTTATCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (12 bp):
TCTTATCGAAGG
Found at i:22191087 original size:49 final size:49
Alignment explanation
Indices: 22191015--22191110 Score: 122
Period size: 49 Copynumber: 2.0 Consensus size: 49
22191005 CATCTATTTA
* * * *
22191015 AAGGTTGAAAAACTTTATTCTAATAAATATCAAATAGATGAAGTGTAGT
1 AAGGTTAAAAAACTTTACTCTAATAAATATCAAATAAAAGAAGTGTAGT
* *
22191064 AAGGTTAAAAAA-TCTTACTCTAATCAATGTCAAATAAAAGAAGTGTA
1 AAGGTTAAAAAACT-TTACTCTAATAAATATCAAATAAAAGAAGTGTA
22191111 ATTATATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
48 1 0.03
49 39 0.98
ACGTcount: A:0.47, C:0.08, G:0.15, T:0.30
Consensus pattern (49 bp):
AAGGTTAAAAAACTTTACTCTAATAAATATCAAATAAAAGAAGTGTAGT
Found at i:22193141 original size:17 final size:17
Alignment explanation
Indices: 22193097--22193135 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
22193087 CTCCACGTTG
* *
22193097 ACAAGAATTCTCTACGA
1 ACAAGAACTCTCAACGA
22193114 ACAAGAACTCTCAACGA
1 ACAAGAACTCTCAACGA
22193131 ACAAG
1 ACAAG
22193136 TTCTCTTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.26, G:0.13, T:0.15
Consensus pattern (17 bp):
ACAAGAACTCTCAACGA
Found at i:22198101 original size:31 final size:31
Alignment explanation
Indices: 22198066--22198130 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
22198056 TTAAATTATT
*
22198066 AATGAT-AAAATTATATTTTGACTCTTTTAAA
1 AATGATAAAAATT-TATTTTAACTCTTTTAAA
*
22198097 AATGATAAAAATTTATTTTAATTCTTTTAAA
1 AATGATAAAAATTTATTTTAACTCTTTTAAA
22198128 AAT
1 AAT
22198131 TATATACTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 25 0.81
32 6 0.19
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.46
Consensus pattern (31 bp):
AATGATAAAAATTTATTTTAACTCTTTTAAA
Found at i:22200037 original size:4 final size:4
Alignment explanation
Indices: 22200028--22200053 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
22200018 TGCTCAGCAA
22200028 AATC AATC AATC AATC AATC AATC AA
1 AATC AATC AATC AATC AATC AATC AA
22200054 GCACAACTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (4 bp):
AATC
Found at i:22201124 original size:16 final size:16
Alignment explanation
Indices: 22201105--22201152 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
22201095 AGAACAACAT
22201105 TTGTTTAGAATAGTTG
1 TTGTTTAGAATAGTTG
* *
22201121 TTGTTTAGAATAATTT
1 TTGTTTAGAATAGTTG
*
22201137 TTGTTTGATAATAGTT
1 TTGTTT-AGAATAGTT
22201153 ATGTTTGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 20 0.74
17 7 0.26
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (16 bp):
TTGTTTAGAATAGTTG
Found at i:22203332 original size:15 final size:16
Alignment explanation
Indices: 22203307--22203336 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
22203297 CCTATAATAA
22203307 GATTATTAAAAAAATC
1 GATTATTAAAAAAATC
22203323 GATT-TTAAAAAAAT
1 GATTATTAAAAAAAT
22203337 TAATGCTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (16 bp):
GATTATTAAAAAAATC
Found at i:22206249 original size:17 final size:17
Alignment explanation
Indices: 22206229--22206276 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
22206219 TTGAACCCAG
*
22206229 TTTTAAATTTTAATCTA
1 TTTTAAATTTAAATCTA
* *
22206246 TTTTAAGTTTAAATTTA
1 TTTTAAATTTAAATCTA
*
22206263 TTTTTAATTTAAAT
1 TTTTAAATTTAAAT
22206277 TTTAAAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (17 bp):
TTTTAAATTTAAATCTA
Found at i:22206792 original size:2 final size:2
Alignment explanation
Indices: 22206785--22206812 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22206775 ACATACATAC
22206785 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22206813 GCAGATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22207522 original size:30 final size:29
Alignment explanation
Indices: 22207488--22207870 Score: 191
Period size: 30 Copynumber: 13.0 Consensus size: 29
22207478 TAAAAATCAT
22207488 ATTTTGACCCTAAAACTTTTCCAAAATTAC
1 ATTTTGACCCT-AAACTTTTCCAAAATTAC
* * *
22207518 ATTTTGATCCTTAAAC-TTTCCATAAATCAT
1 ATTTTGA-CCCTAAACTTTTCCA-AAATTAC
** *
22207548 ATTTTGACCTCTAAACTTTTTTAAAATTAT
1 ATTTTGACC-CTAAACTTTTCCAAAATTAC
*
22207578 ATTTTAACCTCTAAACTTCTT-CAAAATTAC
1 ATTTTGACC-CTAAACTT-TTCCAAAATTAC
* * *
22207608 -TTTTAACCCCCAAACTTCTCCAAAATTAC
1 ATTTTGA-CCCTAAACTTTTCCAAAATTAC
* *
22207637 TTTTTGACCCCTAAAC-TTTCCTAAAATCAC
1 ATTTTGA-CCCTAAACTTTTCC-AAAATTAC
* *
22207667 ATTTTGA-CCTCGAAC--TTCCAAAAATCAC
1 ATTTTGACCCT-AAACTTTTCC-AAAATTAC
* * *
22207695 ATTCTT-ACCCCTGAACTTCTCAAAAATTAC
1 ATT-TTGA-CCCTAAACTTTTCCAAAATTAC
* *
22207725 ATTTTTG-CTCTCAAAC-TTTCAAAAATTTA-
1 A-TTTTGACCCT-AAACTTTTCCAAAA-TTAC
* * *
22207754 ATTTTTCACCCTCAAAC-TTTCAAAAATCAC
1 A-TTTTGACCCT-AAACTTTTCCAAAATTAC
* * * *
22207784 ATTTTTACCCTTGAACTTCTT-GAAAATCAC
1 ATTTTGACCC-TAAACTT-TTCCAAAATTAC
* ** *
22207814 ATTTTTACCCCGAACTTTCCCAAAATTAC
1 ATTTTGACCCTAAACTTTTCCAAAATTAC
* *
22207843 ATTTTTACCCCTAAACCTTT-CAAAATTA
1 ATTTTGA-CCCTAAACTTTTCCAAAATTA
22207871 TGTTTTAACC
Statistics
Matches: 288, Mismatches: 39, Indels: 53
0.76 0.10 0.14
Matches are distributed among these distances:
28 21 0.07
29 101 0.35
30 151 0.52
31 15 0.05
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (29 bp):
ATTTTGACCCTAAACTTTTCCAAAATTAC
Found at i:22207683 original size:59 final size:59
Alignment explanation
Indices: 22207479--22207852 Score: 223
Period size: 59 Copynumber: 6.3 Consensus size: 59
22207469 TGAACATTCT
* * * * * * *
22207479 AAAAATCATATTTTGACCCTAAAACTTTTCCAAAATTACATTTTGATCCTTAAACTTTCC
1 AAAAATCACATTTTGACCCTCAAACTTCTCAAAAATTAC-TTTTTACCCCTAAACTTTCC
* * * ** * *
22207539 ATAAATCATATTTTGA-CCTCTAAACTTTTTTAAAATTA-TATTTTAACCTCTAAACTTCTTC
1 AAAAATCACATTTTGACCCTC-AAACTTCTCAAAAATTACT-TTTT-ACCCCTAAACTT-TCC
* * * *
22207600 -AAAATTAC-TTTTAACCCCCAAACTTCTCCAAAATTACTTTTTGACCCCTAAACTTTCC
1 AAAAATCACATTTTGACCCTCAAACTTCTCAAAAATTACTTTTT-ACCCCTAAACTTTCC
* * * * *
22207658 TAAAATCACATTTTGA-CCTCGAACTTC-CAAAAATCACATTCTTACCCCTGAAC-TTCTC
1 AAAAATCACATTTTGACCCTCAAACTTCTCAAAAATTAC-TTTTTACCCCTAAACTTTC-C
* * *
22207716 AAAAATTACATTTTTG-CTCTCAAACTT-TCAAAAATTTAATTTTT-CACCCTCAAACTTT-C
1 AAAAATCACA-TTTTGACCCTCAAACTTCTCAAAAA-TTACTTTTTAC-CCCT-AAACTTTCC
* ** ** * *
22207775 AAAAATCACATTTTTACCCTTGAACTTCTTGAAAATCACATTTTTACCCC-GAACTTTCC
1 AAAAATCACATTTTGACCCTCAAACTTCTCAAAAATTAC-TTTTTACCCCTAAACTTTCC
* * *
22207834 CAAAATTACATTTTTACCC
1 AAAAATCACATTTTGACCC
22207853 CTAAACCTTT
Statistics
Matches: 244, Mismatches: 48, Indels: 45
0.72 0.14 0.13
Matches are distributed among these distances:
57 3 0.01
58 40 0.16
59 125 0.51
60 71 0.29
61 5 0.02
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (59 bp):
AAAAATCACATTTTGACCCTCAAACTTCTCAAAAATTACTTTTTACCCCTAAACTTTCC
Found at i:22207848 original size:89 final size:89
Alignment explanation
Indices: 22207620--22207867 Score: 249
Period size: 89 Copynumber: 2.8 Consensus size: 89
22207610 TTAACCCCCA
* * * * * *
22207620 AACTTCTCCAAAATTAC-TTTTTGAC-CCCTAAACTTTCCTAAAATCACATTTTGA-CCTCGAAC
1 AACTTCTCAAAAATCACATTTTT-ACTCCC-AAACTTTCCAAAAATTACATTTTTACCCTCAAAC
*
22207682 TTCCAAAAATCACATTCTTACCCCTG
64 TTTCAAAAATCACATTCTTACCCCTG
* * *
22207708 AACTTCTCAAAAATTACATTTTTGCTCTCAAACTTT-CAAAAATTTA-ATTTTTCACCCTCAAAC
1 AACTTCTCAAAAATCACATTTTTACTCCCAAACTTTCCAAAAA-TTACATTTTT-ACCCTCAAAC
* *
22207771 TTTCAAAAATCACATTTTTACCCTTG
64 TTTCAAAAATCACATTCTTACCCCTG
** * *
22207797 AACTTCTTGAAAATCACATTTTTAC-CCCGAACTTTCCCAAAATTACATTTTTACCC-CTAAACC
1 AACTTCTCAAAAATCACATTTTTACTCCCAAACTTTCCAAAAATTACATTTTTACCCTC-AAA-C
22207860 TTTCAAAA
64 TTTCAAAA
22207868 TTATGTTTTA
Statistics
Matches: 134, Mismatches: 17, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
87 11 0.08
88 45 0.34
89 78 0.58
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.35
Consensus pattern (89 bp):
AACTTCTCAAAAATCACATTTTTACTCCCAAACTTTCCAAAAATTACATTTTTACCCTCAAACTT
TCAAAAATCACATTCTTACCCCTG
Found at i:22207887 original size:59 final size:58
Alignment explanation
Indices: 22207703--22207905 Score: 143
Period size: 59 Copynumber: 3.5 Consensus size: 58
22207693 ACATTCTTAC
* * *
22207703 CCCT-GAAC-TTCTCAAAAATTACATTTTT-GCTCTCAAA-CTTTCAAAAATTTAATTTTTCA
1 CCCTCGAACTTTC-CAAAAATTACATTTTTACCCCT-AAACCTTTC-AAAA-TT-ATTTTTAA
* * * * * * *
22207762 CCCTCAAACTTT-CAAAAATCACATTTTTACCCTTGAACTTCTTGAAAATCACATTTTT-A
1 CCCTCGAACTTTCCAAAAATTACATTTTTACCCCTAAACCT-TTCAAAAT--TATTTTTAA
*
22207821 CCC-CGAACTTTCCCAAAATTACATTTTTACCCCTAAACCTTTCAAAATTATGTTTTAA
1 CCCTCGAACTTTCCAAAAATTACATTTTTACCCCTAAACCTTTCAAAATTAT-TTTTAA
* * *
22207879 CCCTCGAACTCTCCGAAACTT-CATTTT
1 CCCTCGAACTTTCCAAAAATTACATTTT
22207906 CGACCTCATT
Statistics
Matches: 113, Mismatches: 20, Indels: 23
0.72 0.13 0.15
Matches are distributed among these distances:
56 2 0.02
57 4 0.04
58 24 0.21
59 63 0.56
60 16 0.14
61 4 0.04
ACGTcount: A:0.32, C:0.27, G:0.04, T:0.37
Consensus pattern (58 bp):
CCCTCGAACTTTCCAAAAATTACATTTTTACCCCTAAACCTTTCAAAATTATTTTTAA
Found at i:22216888 original size:39 final size:39
Alignment explanation
Indices: 22216844--22217182 Score: 215
Period size: 39 Copynumber: 8.7 Consensus size: 39
22216834 GAAGATTCCG
22216844 ATCTCTTACCCCGAGCCT-GGGCCAGATCACCATCAACCA
1 ATCTCTTACCCCGAGCCTAGGG-CAGATCACCATCAACCA
** * * * *
22216883 ATCTCTTACCCTAAGCCTAGGGCAGATTA-CAGCCATCCG
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCA-TCAACCA
* * * *
22216922 ATCTCTTACCCTGAACCTAGGGTAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAACCA
* ** * *
22216961 ATCTCTTACCTCGAGCCTAGGGCAGAT-TGCAGCGATCCA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATC-AACCA
* * *
22217000 ATCTTTTACCACGAGCCTGGGGCAGATCACCATCAACCA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAACCA
* * * * * * **
22217039 ATCTCTTACCCCAATCTTGGGGTAGATTGTAGCCAT---CTG
1 ATCTCTTACCCCGAGCCTAGGGCAGA-T-CA-CCATCAACCA
* * * * * * *
22217078 ATCTTTTACCCCAAGCCT-GAGGTAGATTACAATCATCCG
1 ATCTCTTACCCCGAGCCTAG-GGCAGATCACCATCAACCA
* * * *
22217117 ATCTTTTACCCCGAGCTTAAGGCAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAACCA
* *
22217156 ATCTTTTACCCTGAGCCTAGGGCAGAT
1 ATCTCTTACCCCGAGCCTAGGGCAGAT
22217183 TGCAACAATC
Statistics
Matches: 234, Mismatches: 53, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
36 3 0.01
37 2 0.01
38 7 0.03
39 208 0.89
40 9 0.04
41 1 0.00
42 4 0.02
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAACCA
Found at i:22216927 original size:78 final size:77
Alignment explanation
Indices: 22216824--22217096 Score: 300
Period size: 78 Copynumber: 3.5 Consensus size: 77
22216814 TTAATAAAGA
*
22216824 AGGGCAGATTGAAG--ATTCCGATCTCTTACCCCGAGCCTGGGCCAGATCACCATCAACCAATCT
1 AGGGCAGATTGCAGCCA-TCCGATCTCTTACCCCGAGCCTGGG-CAGATCACCATCAACCAATCT
22216887 CTTACCCTAAGCCT
64 CTTACCCTAAGCCT
* * * * *
22216901 AGGGCAGATTACAGCCATCCGATCTCTTACCCTGAACCTAGGGTAGATCACCATCAGCCAATCTC
1 AGGGCAGATTGCAGCCATCCGATCTCTTACCCCGAGCCT-GGGCAGATCACCATCAACCAATCTC
*
22216966 TTA-CCTCGAGCCT
65 TTACCCT-AAGCCT
* * * *
22216979 AGGGCAGATTGCAGCGATCCAATCTTTTACCACGAGCCTGGGGCAGATCACCATCAACCAATCTC
1 AGGGCAGATTGCAGCCATCCGATCTCTTACCCCGAGCCT-GGGCAGATCACCATCAACCAATCTC
* * *
22217044 TTACCCCAATCTT
65 TTACCCTAAGCCT
* * * * * *
22217057 GGGGTAGATTGTAGCCATCTGATCTTTTACCCCAAGCCTG
1 AGGGCAGATTGCAGCCATCCGATCTCTTACCCCGAGCCTG
22217097 AGGTAGATTA
Statistics
Matches: 162, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
77 16 0.10
78 140 0.86
79 6 0.04
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (77 bp):
AGGGCAGATTGCAGCCATCCGATCTCTTACCCCGAGCCTGGGCAGATCACCATCAACCAATCTCT
TACCCTAAGCCT
Found at i:22217087 original size:117 final size:115
Alignment explanation
Indices: 22216961--22217262 Score: 298
Period size: 117 Copynumber: 2.6 Consensus size: 115
22216951 CCATCAGCCA
* * *
22216961 ATCTCTTACCTCGAGCCTAGGGCAGATTGCAGCGATCCAATCTTTTACCACGAGCCTGGGGCAGA
1 ATCTTTTACCTCGAGCCT-GGGCAGATTGCAGC-ATCCGATCTTTTACCCCGAGCCTGGGGCAGA
* * * * * * *
22217026 TCACCATCAACCAATCTCTTACCCCAATCTTGGGGTAGATTGTAGCCATCTG
64 TCACCATCAACCAATCTCTTACCCCAAGCCTAGGGCAGATTGCAACAATCTG
* * * * * * **
22217078 ATCTTTTACCCCAAGCCTGAGGTAGATTACAATCATCCGATCTTTTACCCCGAGCTTAAGGCAGA
1 ATCTTTTACCTCGAGCCTG-GGCAGATTGC-AGCATCCGATCTTTTACCCCGAGCCTGGGGCAGA
* * **
22217143 TCACCATCAGCCAATCTTTTACCCTGAGCCTAGGGCAGATTGCAACAATCTG
64 TCACCATCAACCAATCTCTTACCCCAAGCCTAGGGCAGATTGCAACAATCTG
* * ** * *
22217195 ATCTTTTACCTCGAGCTTGGGGCAGATTGTAGCTATTTGATCTTTTACCCCGATCGTGGGGCAGA
1 ATCTTTTACCTCGAGCCT-GGGCAGATTGCAGC-ATCCGATCTTTTACCCCGAGCCTGGGGCAGA
22217260 TCA
64 TCA
22217263 TCGTCAGTCA
Statistics
Matches: 146, Mismatches: 35, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
116 3 0.02
117 140 0.96
118 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (115 bp):
ATCTTTTACCTCGAGCCTGGGCAGATTGCAGCATCCGATCTTTTACCCCGAGCCTGGGGCAGATC
ACCATCAACCAATCTCTTACCCCAAGCCTAGGGCAGATTGCAACAATCTG
Found at i:22217160 original size:78 final size:78
Alignment explanation
Indices: 22217078--22217221 Score: 184
Period size: 78 Copynumber: 1.8 Consensus size: 78
22217068 TAGCCATCTG
*
22217078 ATCTTTTACCCCAAGCCT-GAGGTAGATTACAATC-ATCCGATCTTTTACCCCGAGCTTAAGGCA
1 ATCTTTTACCCCAAGCCTAG-GGCAGATTACAA-CAATCCGATCTTTTACCCCGAGCTTAAGGCA
22217141 GATCACCATCAGCCA
64 GATCACCATCAGCCA
** * * * **
22217156 ATCTTTTACCCTGAGCCTAGGGCAGATTGCAACAATCTGATCTTTTACCTCGAGCTTGGGGCAGA
1 ATCTTTTACCCCAAGCCTAGGGCAGATTACAACAATCCGATCTTTTACCCCGAGCTTAAGGCAGA
22217221 T
66 T
22217222 TGTAGCTATT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
77 1 0.02
78 54 0.96
79 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (78 bp):
ATCTTTTACCCCAAGCCTAGGGCAGATTACAACAATCCGATCTTTTACCCCGAGCTTAAGGCAGA
TCACCATCAGCCA
Found at i:22217255 original size:39 final size:39
Alignment explanation
Indices: 22216961--22217260 Score: 151
Period size: 39 Copynumber: 7.7 Consensus size: 39
22216951 CCATCAGCCA
* * * * * **
22216961 ATCTCTTACCTCGAGCCTAGGGCAGATTGCAGCGATCCA
1 ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACAATCTG
* ** * **
22217000 ATCTTTTACCACGAGCCTGGGGCAGATCACCATCAA-CCA
1 ATCTTTTACCCCGAGCCTGGGGCAGAT-TGCAACAATCTG
* * * * * * * *
22217039 ATCTCTTACCCCAATCTTGGGGTAGATTGTAGCCATCTG
1 ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACAATCTG
* * * * *
22217078 ATCTTTTACCCCAAGCCTGAGGTAGATTACAATC-ATCCG
1 ATCTTTTACCCCGAGCCTGGGGCAGATTGCAA-CAATCTG
* ** * *
22217117 ATCTTTTACCCCGAGCTTAAGGCAGA-T-C-ACCATCAG
1 ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACAATCTG
* *
22217153 CCAATCTTTTACCCTGAGCCTAGGGCAGATTGCAACAATCTG
1 ---ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACAATCTG
* * * * * *
22217195 ATCTTTTACCTCGAGCTTGGGGCAGATTGTAGCTATTTG
1 ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACAATCTG
* *
22217234 ATCTTTTACCCCGATCGTGGGGCAGAT
1 ATCTTTTACCCCGAGCCTGGGGCAGAT
22217261 CATCGTCAGT
Statistics
Matches: 202, Mismatches: 49, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
35 1 0.00
36 5 0.02
37 1 0.00
38 4 0.02
39 178 0.88
40 6 0.03
41 1 0.00
42 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (39 bp):
ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACAATCTG
Found at i:22217852 original size:17 final size:17
Alignment explanation
Indices: 22217804--22217854 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
22217794 TTGAACCTAG
* *
22217804 TTTTAAATTTTAATCTA
1 TTTTAAATTTAAATTTA
*
22217821 TTTTAAGTTTAAATTTA
1 TTTTAAATTTAAATTTA
22217838 TTTTAAATTTAAATTTA
1 TTTTAAATTTAAATTTA
22217855 AAAAAAAGTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (17 bp):
TTTTAAATTTAAATTTA
Found at i:22219096 original size:29 final size:29
Alignment explanation
Indices: 22219026--22219507 Score: 208
Period size: 30 Copynumber: 16.4 Consensus size: 29
22219016 TAGAAATCAT
* *
22219026 ATTTTAACACCCAAACTTTTCC-AAAATTAT
1 ATTTTAAC-CCTAAAC-TTTCCAAAAATTAC
** *
22219056 ATTTTGGTCCCTAAACTTTCCAAAAATCAC
1 ATTTT-AACCCTAAACTTTCCAAAAATTAC
* *
22219086 ATTTTAACCCTTAGAACTTT-CAAAAATCAT
1 ATTTTAACCC-TA-AACTTTCCAAAAATTAC
* **
22219116 ATTTTAACACCCAAACTTTTCC-AAAATTGT
1 ATTTTAAC-CCTAAAC-TTTCCAAAAATTAC
** *
22219146 ATTTTGGTCCCTAAACTTTCCAAAAATCAC
1 ATTTT-AACCCTAAACTTTCCAAAAATTAC
*
22219176 ATTTTAACCCTTAAACTTTTTC-AAAATTAC
1 ATTTTAACCC-TAAAC-TTTCCAAAAATTAC
*
22219206 ATTTTGACCCATAAACTACTT-C--AAATTAC
1 ATTTTAACCC-TAAACT--TTCCAAAAATTAC
* * * *
22219235 TTTTTAACCCCCAAAC-TTCTCTAAAATTAT
1 ATTTTAA-CCCTAAACTTTC-CAAAAATTAC
* *
22219265 ATTTTAACCCCTAAACTTTCCTAAAATCAC
1 ATTTTAA-CCCTAAACTTTCCAAAAATTAC
* **
22219295 CTTTTAACCCCGAAC-TTCCAAAAATCATA-
1 ATTTTAACCCTAAACTTTCCAAAAAT--TAC
* * *
22219324 ATTTTACCCCTGAAC-TTCTTAAAAATTAC
1 ATTTTAACCCTAAACTTTC-CAAAAATTAC
** ** * * *
22219353 ATTTTTGCTCCCGAACTTT-TAGAAATTAT
1 ATTTTAAC-CCTAAACTTTCCAAAAATTAC
** *
22219382 ATTTTTGCCCTCAAAC-TTCCAAAAATCAC
1 ATTTTAACCCT-AAACTTTCCAAAAATTAC
* * * *
22219411 ATTTTTACCCTGAAC-TTCTCGAAAATCAC
1 ATTTTAACCCTAAACTTTC-CAAAAATTAC
* * *
22219440 ATTTTTATCCC-GAACTTTTCAAAAATTAC
1 A-TTTTAACCCTAAACTTTCCAAAAATTAC
*
22219469 ATTTGT-ACCCTAAACCTTT-C-AAAATTAT
1 ATTT-TAACCCTAAA-CTTTCCAAAAATTAC
22219497 ATTTTAACCCT
1 ATTTTAACCCT
22219508 CGAACTCTCC
Statistics
Matches: 356, Mismatches: 62, Indels: 70
0.73 0.13 0.14
Matches are distributed among these distances:
26 2 0.01
27 1 0.00
28 44 0.12
29 125 0.35
30 162 0.46
31 22 0.06
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.37
Consensus pattern (29 bp):
ATTTTAACCCTAAACTTTCCAAAAATTAC
Found at i:22219112 original size:60 final size:60
Alignment explanation
Indices: 22219003--22219120 Score: 141
Period size: 60 Copynumber: 2.0 Consensus size: 60
22218993 GTTTGATAGA
* * * * * *
22219003 TCCCTGAACTTTCTAGAAATCATATTTTAACACCCAAACTTTTCCAAAATTATATTTTGG
1 TCCCTAAACTTTCCAAAAATCACATTTTAACACCCAAACTTTTCAAAAATCATATTTTGG
*
22219063 TCCCTAAACTTTCCAAAAATCACATTTTAAC-CCTTAGAAC-TTTCAAAAATCATATTTT
1 TCCCTAAACTTTCCAAAAATCACATTTTAACACC-CA-AACTTTTCAAAAATCATATTTT
22219121 AACACCCAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
59 2 0.04
60 44 0.90
61 3 0.06
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.37
Consensus pattern (60 bp):
TCCCTAAACTTTCCAAAAATCACATTTTAACACCCAAACTTTTCAAAAATCATATTTTGG
Found at i:22219142 original size:60 final size:58
Alignment explanation
Indices: 22219068--22219507 Score: 235
Period size: 59 Copynumber: 7.5 Consensus size: 58
22219058 TTTGGTCCCT
* *
22219068 AAAC-TTTCCAAAAATCACATTTTAACCCTTAGAACTTT-CAAAAATCATATTTTAACACCC
1 AAACTTTTCC-AAAATTACATTTTAACCC-TA-AACTTTCCAAAAATCACATTTTAAC-CCC
** ** *
22219128 AAACTTTTCCAAAATTGTATTTTGGTCCCTAAACTTTCCAAAAATCACATTTTAACCCTT
1 AAACTTTTCCAAAATTACATTTT-AACCCTAAACTTTCCAAAAATCACATTTTAACCC-C
* * * *
22219188 AAACTTTTTCAAAATTACATTTTGACCCATAAACTACTT-C--AAATTACTTTTTAACCCCC
1 AAACTTTTCCAAAATTACATTTTAACCC-TAAACT--TTCCAAAAATCACATTTTAA-CCCC
* * * * *
22219247 AAACTTCTCTAAAATTATATTTTAACCCCTAAACTTTCCTAAAATCACCTTTTAACCCC
1 AAACTTTTCCAAAATTACATTTTAA-CCCTAAACTTTCCAAAAATCACATTTTAACCCC
* * * * * **
22219306 GAAC--TTCCAAAAATCATA-ATTTTACCCCTGAAC-TTCTTAAAAATTACATTTTTGCTCCC
1 AAACTTTTCC-AAAAT--TACATTTTAACCCTAAACTTTC-CAAAAATCACATTTTAAC-CCC
* * ** * *
22219365 GAACTTTT--AGAAATTATATTTTTGCCCTCAAAC-TTCCAAAAATCACATTTTTACCCT
1 AAACTTTTCCA-AAATTACATTTTAACCCT-AAACTTTCCAAAAATCACATTTTAACCCC
* * * * * * * * *
22219422 GAACTTCTCGAAAATCACATTTTTATCCC-GAACTTTTCAAAAATTACATTTGT-ACCCT
1 AAACTTTTCCAAAATTACA-TTTTAACCCTAAACTTTCCAAAAATCACATTT-TAACCCC
* *
22219480 AAACCTTT-CAAAATTATATTTTAACCCT
1 AAACTTTTCCAAAATTACATTTTAACCCT
22219508 CGAACTCTCC
Statistics
Matches: 298, Mismatches: 54, Indels: 59
0.73 0.13 0.14
Matches are distributed among these distances:
56 8 0.03
57 28 0.09
58 81 0.27
59 89 0.30
60 79 0.27
61 11 0.04
62 2 0.01
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.36
Consensus pattern (58 bp):
AAACTTTTCCAAAATTACATTTTAACCCTAAACTTTCCAAAAATCACATTTTAACCCC
Found at i:22219172 original size:90 final size:91
Alignment explanation
Indices: 22219008--22219194 Score: 342
Period size: 90 Copynumber: 2.1 Consensus size: 91
22218998 ATAGATCCCT
*
22219008 GAACTTTCTAGAAATCATATTTTAACACCCAAACTTTTCCAAAATTATATTTTGGTCCCTAAACT
1 GAACTTTCTAAAAATCATATTTTAACACCCAAACTTTTCCAAAATTATATTTTGGTCCCTAAACT
22219073 TTCCAAAAATCACATTTTAACCCTTA
66 TTCCAAAAATCACATTTTAACCCTTA
*
22219099 GAACTTTC-AAAAATCATATTTTAACACCCAAACTTTTCCAAAATTGTATTTTGGTCCCTAAACT
1 GAACTTTCTAAAAATCATATTTTAACACCCAAACTTTTCCAAAATTATATTTTGGTCCCTAAACT
22219163 TTCCAAAAATCACATTTTAACCCTTA
66 TTCCAAAAATCACATTTTAACCCTTA
22219189 -AACTTT
1 GAACTTT
22219195 TTCAAAATTA
Statistics
Matches: 94, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
89 6 0.06
90 80 0.85
91 8 0.09
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.36
Consensus pattern (91 bp):
GAACTTTCTAAAAATCATATTTTAACACCCAAACTTTTCCAAAATTATATTTTGGTCCCTAAACT
TTCCAAAAATCACATTTTAACCCTTA
Found at i:22219386 original size:58 final size:57
Alignment explanation
Indices: 22219254--22219478 Score: 154
Period size: 58 Copynumber: 3.9 Consensus size: 57
22219244 CCCAAACTTC
* * * *
22219254 TCTA-AAATTATATTTTAACCCCTAAACTTTCCT-AAAATCACCTTTTAACCCCGAACT
1 TCTAGAAATCATATTTT-ACCCCTAAAC-TTCTTAAAAATCACATTTTTACCCCGAACT
* * * * *
22219311 TCCAAAAATCATAATTTTACCCCTGAACTTCTTAAAAATTACATTTTTGCTCCCGAACT
1 TCTAGAAATCAT-ATTTTACCCCTAAACTTCTTAAAAATCACATTTTTAC-CCCGAACT
* * ** * *
22219370 TTTAGAAATTATATTTTTGCCCTCAAACTTC-CAAAAATCACATTTTTACCCTGAACT
1 TCTAGAAATCATATTTTACCCCT-AAACTTCTTAAAAATCACATTTTTACCCCGAACT
* * * * * *
22219427 TCTCGAAAATCACATTTTTATCCC-GAACTT-TTCAAAAATTACATTTGTACCC
1 TCTAG-AAATCATA-TTTTACCCCTAAACTTCTT-AAAAATCACATTTTTACCC
22219479 TAAACCTTTC
Statistics
Matches: 130, Mismatches: 29, Indels: 17
0.74 0.16 0.10
Matches are distributed among these distances:
57 22 0.17
58 74 0.57
59 34 0.26
ACGTcount: A:0.34, C:0.25, G:0.04, T:0.36
Consensus pattern (57 bp):
TCTAGAAATCATATTTTACCCCTAAACTTCTTAAAAATCACATTTTTACCCCGAACT
Found at i:22219468 original size:116 final size:117
Alignment explanation
Indices: 22219003--22219506 Score: 302
Period size: 119 Copynumber: 4.3 Consensus size: 117
22218993 GTTTGATAGA
* * * **
22219003 TCCCTGAACTTTCTAGAAATCATATTTTAACACCC-AAACTTTTCC-AAAATTATATTTTGGTCC
1 TCCC-GAACTTT-TAGAAATTATATTTTAAC-CCCTAAAC-TTTCCAAAAATCACATTTT-AACC
** * * * * **
22219066 CTAAACTTTCCAAAAATCAC-ATTTTAACCCTTAGAACTT-TCAAAAATCATATTTTAAC
61 CCGAAC-TTCCAAAAATCACAATTTT-ACCCCT-GAACTTCTTAAAAATTACATTTTTGC
* * * *** *
22219124 ACCCAAACTTTTCCA-AAATTGTATTTTGGTCCCTAAACTTTCCAAAAATCACATTTTAACCCTT
1 TCCCGAACTTTT--AGAAATTATATTTTAACCCCTAAACTTTCCAAAAATCACATTTTAACCC-C
* * * * * * * *
22219188 AAACTTTTTC-AAAATTAC-ATTTTGACCCATAAACTACTT-CAAATTAC-TTTTTAAC
63 GAAC--TTCCAAAAATCACAATTTT-ACCCCTGAACTTCTTAAAAATTACATTTTT-GC
* * * *
22219243 CCCCAAACTTCTCTA-AAATTATATTTTAACCCCTAAACTTTCCTAAAATCACCTTTTAACCCCG
1 TCCCGAACTT-T-TAGAAATTATATTTTAACCCCTAAACTTTCCAAAAATCACATTTTAACCCCG
*
22219307 AACTTCCAAAAATCATAATTTTACCCCTGAACTTCTTAAAAATTACATTTTTGC
64 AACTTCCAAAAATCACAATTTTACCCCTGAACTTCTTAAAAATTACATTTTTGC
** * *
22219361 TCCCGAACTTTTAGAAATTATATTTT-TGCCCTCAAAC-TTCCAAAAATCACATTTTTACCCTGA
1 TCCCGAACTTTTAGAAATTATATTTTAACCCCT-AAACTTTCCAAAAATCACATTTTAACCCCGA
* * * * *
22219424 ACTTCTCGAAAATCACATTTTTATCCC-GAACTT-TTCAAAAATTACATTTGTAC
65 ACTTC-CAAAAATCACAATTTTACCCCTGAACTTCTT-AAAAATTACATTTTTGC
** *
22219477 -CCTAAACCTTTCA-AAATTATATTTTAACCC
1 TCCCGAA-CTTTTAGAAATTATATTTTAACCC
22219507 TCGAACTCTC
Statistics
Matches: 305, Mismatches: 58, Indels: 45
0.75 0.14 0.11
Matches are distributed among these distances:
115 18 0.06
116 64 0.21
117 52 0.17
118 28 0.09
119 79 0.26
120 55 0.18
121 9 0.03
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.37
Consensus pattern (117 bp):
TCCCGAACTTTTAGAAATTATATTTTAACCCCTAAACTTTCCAAAAATCACATTTTAACCCCGAA
CTTCCAAAAATCACAATTTTACCCCTGAACTTCTTAAAAATTACATTTTTGC
Found at i:22219513 original size:87 final size:87
Alignment explanation
Indices: 22219307--22219521 Score: 240
Period size: 87 Copynumber: 2.5 Consensus size: 87
22219297 TTTAACCCCG
* ** * *
22219307 AACTTCCAAAAATCATAATTTTACCCCTGAACTTCTTAAAAATTACATTTTTGCTCCCGAACTTT
1 AACTTCCAAAAATCAT-ATTTTAACCCTGAACTTCTCGAAAATCACATTTTTGATCCCGAACTTT
* * * *
22219372 TAGAAATTATATTTTTGCCCTCA
65 TAAAAATTACATTTGTACCCTCA
* *
22219395 AACTTCCAAAAATCACATTTTTACCCTGAACTTCTCGAAAATCACATTTTT-ATCCCGAACTTTT
1 AACTTCCAAAAATCATATTTTAACCCTGAACTTCTCGAAAATCACATTTTTGATCCCGAACTTTT
22219459 CAAAAATTACATTTGTACCCT-A
66 -AAAAATTACATTTGTACCCTCA
* *
22219481 AACCTTTC-AAAATTATATTTTAACCCTCGAAC-TCTCCGAAA
1 AA-CTTCCAAAAATCATATTTTAACCCT-GAACTTCT-CGAAA
22219522 CTTCATTTTC
Statistics
Matches: 108, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
86 34 0.31
87 59 0.55
88 15 0.14
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (87 bp):
AACTTCCAAAAATCATATTTTAACCCTGAACTTCTCGAAAATCACATTTTTGATCCCGAACTTTT
AAAAATTACATTTGTACCCTCA
Found at i:22219664 original size:14 final size:15
Alignment explanation
Indices: 22219629--22219680 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 15
22219619 TGATTCATGA
22219629 TTCGTAT-TTTATTT
1 TTCGTATATTTATTT
*
22219643 TTCTTATATTTATTT
1 TTCGTATATTTATTT
*
22219658 TT-GTATATTTATTCA
1 TTCGTATATTTATT-T
22219673 TTCGTATA
1 TTCGTATA
22219681 ATTGTTCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 16 0.50
15 11 0.34
16 5 0.16
ACGTcount: A:0.21, C:0.08, G:0.06, T:0.65
Consensus pattern (15 bp):
TTCGTATATTTATTT
Found at i:22221211 original size:16 final size:16
Alignment explanation
Indices: 22221190--22221224 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22221180 ATTCCATGTT
22221190 AAACCACATAAATTTG
1 AAACCACATAAATTTG
* *
22221206 AAACCATATATATTTG
1 AAACCACATAAATTTG
22221222 AAA
1 AAA
22221225 AAAATTTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.06, T:0.29
Consensus pattern (16 bp):
AAACCACATAAATTTG
Found at i:22228175 original size:16 final size:15
Alignment explanation
Indices: 22228156--22228197 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
22228146 CATTATAGAG
22228156 ATAAAATATTAATAAA-
1 ATAAAA-ATTAA-AAAT
22228172 ATAAAAATTGAAAAAT
1 ATAAAAATT-AAAAAT
22228188 ATAAAAATTA
1 ATAAAAATTA
22228198 GTGAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.29
16 17 0.71
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (15 bp):
ATAAAAATTAAAAAT
Found at i:22235308 original size:43 final size:43
Alignment explanation
Indices: 22235242--22235337 Score: 165
Period size: 43 Copynumber: 2.2 Consensus size: 43
22235232 GAGACCTAAT
* * *
22235242 GGTGAGCTAATATGTTTTGTGAGTGTTCCTGTGACCATTAGAA
1 GGTGCGCTAATATGTTTTGTGAGTGTGCCTATGACCATTAGAA
22235285 GGTGCGCTAATATGTTTTGTGAGTGTGCCTATGACCATTAGAA
1 GGTGCGCTAATATGTTTTGTGAGTGTGCCTATGACCATTAGAA
22235328 GGTGCGCTAA
1 GGTGCGCTAA
22235338 CTCGATATTG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (43 bp):
GGTGCGCTAATATGTTTTGTGAGTGTGCCTATGACCATTAGAA
Found at i:22239177 original size:9 final size:9
Alignment explanation
Indices: 22239150--22239210 Score: 65
Period size: 9 Copynumber: 7.0 Consensus size: 9
22239140 TTCAGTGAAT
22239150 TTTGGTTAA
1 TTTGGTTAA
22239159 TTTCGGTTAA
1 TTT-GGTTAA
*
22239169 CTTGGTTAA
1 TTTGGTTAA
*
22239178 TTTGATTAA
1 TTTGGTTAA
22239187 -TT--TTAA
1 TTTGGTTAA
22239193 TTTGGTTAA
1 TTTGGTTAA
*
22239202 TTCGGTTAA
1 TTTGGTTAA
22239211 ATGAACATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
6 4 0.09
7 2 0.05
8 2 0.05
9 28 0.64
10 8 0.18
ACGTcount: A:0.25, C:0.05, G:0.18, T:0.52
Consensus pattern (9 bp):
TTTGGTTAA
Found at i:22239194 original size:15 final size:15
Alignment explanation
Indices: 22239174--22239203 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22239164 GTTAACTTGG
22239174 TTAATTTGATTAATT
1 TTAATTTGATTAATT
*
22239189 TTAATTTGGTTAATT
1 TTAATTTGATTAATT
22239204 CGGTTAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (15 bp):
TTAATTTGATTAATT
Found at i:22239210 original size:24 final size:24
Alignment explanation
Indices: 22239165--22239210 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
22239155 TTAATTTCGG
*
22239165 TTAACTTGGTTAATTTGATTAATT
1 TTAACTTGGTTAATTCGATTAATT
* *
22239189 TTAATTTGGTTAATTCGGTTAA
1 TTAACTTGGTTAATTCGATTAA
22239211 ATGAACATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.04, G:0.15, T:0.52
Consensus pattern (24 bp):
TTAACTTGGTTAATTCGATTAATT
Found at i:22239562 original size:18 final size:18
Alignment explanation
Indices: 22239528--22239566 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22239518 TAAATGGTCT
*
22239528 TTTTCATATTATCTCCTC
1 TTTTCATATCATCTCCTC
22239546 TTTTCATATCA-CTTCCTC
1 TTTTCATATCATC-TCCTC
22239564 TTT
1 TTT
22239567 GGTCCTTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.15, C:0.28, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTCATATCATCTCCTC
Found at i:22241407 original size:30 final size:29
Alignment explanation
Indices: 22241373--22241799 Score: 276
Period size: 30 Copynumber: 14.5 Consensus size: 29
22241363 AAGAGGCCCC
*
22241373 TAAACTTTACAAAACTTACATTTTAACCCT
1 TAAACTTTCCAAAA-TTACATTTTAACCCT
* * *
22241403 TAAAC-TTCCAAAAATCATATTTTTACCCT
1 TAAACTTTCC-AAAATTACATTTTAACCCT
* * * *
22241432 AAAAC-TTCCAAAAATCATATTTTAACCCC
1 TAAACTTTCC-AAAATTACATTTTAACCCT
*
22241461 CAAACTTCTCCAAAATTACATTTTAACCCT
1 TAAACTT-TCCAAAATTACATTTTAACCCT
* * *
22241491 CAAACTTTTCCAAAATTACATTTTGACCCC
1 TAAAC-TTTCCAAAATTACATTTTAACCCT
* * * *
22241521 TAATCTTTTCTAAAATTAC-TTTTTAGCCT
1 TAAAC-TTTCCAAAATTACATTTTAACCCT
* *
22241550 CAAACTTCTCTAAAATTACATTTTAACCCT
1 TAAACTT-TCCAAAATTACATTTTAACCCT
* * *
22241580 TAAACTTTCCAAAAATCACATTTAAACCTT
1 TAAACTTTCC-AAAATTACATTTTAACCCT
* *
22241610 TAAACTTCCCAAAATCACATTTTAACCCT
1 TAAACTTTCCAAAATTACATTTTAACCCT
* * * * *
22241639 AAAATTTTCCAAAATTTCCTTTTTAACCCC
1 TAAACTTTCCAAAA-TTACATTTTAACCCT
* * *
22241669 CAAACTTGCCTAAAATTACATTTTGACCC-
1 TAAACTTTCC-AAAATTACATTTTAACCCT
* * * *
22241698 CAAAATCATCCAAAATTACCATTTT-GCCCT
1 TAAACT-TTCCAAAATTA-CATTTTAACCCT
* * *
22241728 TGAACATTCAAAAATTACCATTTT-ACCC-
1 TAAACTTTCCAAAATTA-CATTTTAACCCT
* * *
22241756 AAAAATTTCCAAAAGTCACATTTTCAA-CCT
1 TAAACTTTCCAAAA-TTACATTTT-AACCCT
* *
22241786 CAAATTTTCCAAAA
1 TAAACTTTCCAAAA
22241800 GTTCGATTTT
Statistics
Matches: 318, Mismatches: 63, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
28 17 0.05
29 134 0.42
30 158 0.50
31 9 0.03
ACGTcount: A:0.38, C:0.26, G:0.02, T:0.34
Consensus pattern (29 bp):
TAAACTTTCCAAAATTACATTTTAACCCT
Found at i:22241558 original size:89 final size:87
Alignment explanation
Indices: 22241374--22241698 Score: 298
Period size: 89 Copynumber: 3.7 Consensus size: 87
22241364 AGAGGCCCCT
* * * * *
22241374 AAACTT-TACAAAACTTACATTTTAACCCTTAAAC-TTCCAAAAATCATATTTTTA-CCCTAAAA
1 AAACTTCTCCAAAA-TTACATTTTAACCCTCAAACTTTCCAAAAATTACATTTTGACCCCT-AAA
* *
22241436 CTTCCAAAAATCATATTTTAACCCCC
64 CTTCCCAAAATCACATTTTAA--CCC
*
22241462 AAACTTCTCCAAAATTACATTTTAACCCTCAAACTTTTCC-AAAATTACATTTTGACCCCTAATC
1 AAACTTCTCCAAAATTACATTTTAACCCTCAAAC-TTTCCAAAAATTACATTTTGACCCCTAAAC
* * * * *
22241526 TTTTCTAAAATTACTTTTTAGCCTC
65 -TTCCCAAAATCACATTTTAACC-C
* * * ** **
22241551 AAACTTCTCTAAAATTACATTTTAACCCTTAAACTTTCCAAAAATCACATTTAAACCTTTAAACT
1 AAACTTCTCCAAAATTACATTTTAACCCTCAAACTTTCCAAAAATTACATTTTGACCCCTAAACT
22241616 TCCCAAAATCACATTTTAACCC
66 TCCCAAAATCACATTTTAACCC
* * * * * * *
22241638 TAAAATTTTCCAAAATTTCCTTTTTAACCCCCAAACTTGCCTAAAATTACATTTTGACCCC
1 -AAACTTCTCCAAAA-TTACATTTTAACCCTCAAACTTTCCAAAAATTACATTTTGACCCC
22241699 AAAATCATCC
Statistics
Matches: 189, Mismatches: 39, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
87 1 0.01
88 60 0.32
89 106 0.56
90 22 0.12
ACGTcount: A:0.37, C:0.26, G:0.01, T:0.35
Consensus pattern (87 bp):
AAACTTCTCCAAAATTACATTTTAACCCTCAAACTTTCCAAAAATTACATTTTGACCCCTAAACT
TCCCAAAATCACATTTTAACCC
Found at i:22241809 original size:30 final size:29
Alignment explanation
Indices: 22241761--22241828 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
22241751 TACCCAAAAA
22241761 TTTCCAAAAGTCACATTTTCAAC-CTCAAAT
1 TTTCCAAAAGTCACATTTT-AACTC-CAAAT
* *
22241791 TTTCCAAAAGTTC-GATTTTAATTCCAAAT
1 TTTCCAAAAG-TCACATTTTAACTCCAAAT
22241820 TTTCCAAAA
1 TTTCCAAAA
22241829 ACTTCAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 16 0.47
30 16 0.47
31 2 0.06
ACGTcount: A:0.37, C:0.22, G:0.04, T:0.37
Consensus pattern (29 bp):
TTTCCAAAAGTCACATTTTAACTCCAAAT
Found at i:22250537 original size:13 final size:13
Alignment explanation
Indices: 22250519--22250544 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22250509 TTGCAAAATC
22250519 CCGAACAGAGGAA
1 CCGAACAGAGGAA
22250532 CCGAACAGAGGAA
1 CCGAACAGAGGAA
22250545 GAGCATGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.31, T:0.00
Consensus pattern (13 bp):
CCGAACAGAGGAA
Found at i:22253988 original size:78 final size:78
Alignment explanation
Indices: 22253886--22254297 Score: 425
Period size: 78 Copynumber: 5.3 Consensus size: 78
22253876 TTGAAGATCT
* * * * * * * *
22253886 GATCTTTTACCTCGAGCTTAGGGCAGATCACCATCAGGCAATCTATTTCCCCAAGCTTGAGGTAG
1 GATCTCTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGAGGTAG
* *
22253951 ATTGCAGCCATCC
66 ATTACAACCATCC
* * *
22253964 GATCTCTTACCCCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGCAG
1 GATCTCTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGAGGTAG
*
22254029 ATTACAACCATTC
66 ATTACAACCATCC
*
22254042 GATCTTTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCT-AGGGTA
1 GATCTCTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGA-GGTA
* **
22254106 AATTACAGTCATCC
65 GATTACAACCATCC
* * * * * ** * *
22254120 GATCTCTTATCCCGAGCCTAGGGCAGATCACCATCAACCAATCGCTTACCCTAAGCCTGGGGCAG
1 GATCTCTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGAGGTAG
* *
22254185 ATTGCAACCATTC
66 ATTACAACCATCC
* * * * **
22254198 AATCTTTTACCCCGAGCTTGGGGCAAATCACCGTCAATCAATCTCTTACCCCGAGCCTG-GGATA
1 GATCTCTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGAGG-TA
* * * *
22254262 GATCACCATCAGCC
65 GATTACAACCATCC
*
22254276 AATCTCTTACCCCGAGC-TAGGG
1 GATCTCTTACCCCGAGCTTAGGG
22254298 GCAGATTGCA
Statistics
Matches: 274, Mismatches: 57, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
77 6 0.02
78 268 0.98
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (78 bp):
GATCTCTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGAGGTAG
ATTACAACCATCC
Found at i:22254103 original size:39 final size:39
Alignment explanation
Indices: 22253965--22254297 Score: 287
Period size: 39 Copynumber: 8.6 Consensus size: 39
22253955 CAGCCATCCG
* *
22253965 ATCTCTTACCCCGAGCTTGGGGCAAATCACCATCAGCCA
1 ATCTCTTACCCCGAGCCTAGGGCAAATCACCATCAGCCA
* * * * * ** *
22254004 ATCTCTTACCCCGAGCCTGGGGCAGATTACAACCATTCG
1 ATCTCTTACCCCGAGCCTAGGGCAAATCACCATCAGCCA
* *
22254043 ATCTTTTACCCCGAGCTTAGGGCAAATCACCATCAGCCA
1 ATCTCTTACCCCGAGCCTAGGGCAAATCACCATCAGCCA
* * * *
22254082 ATCTCTTACCCCGAGCCTAGGGTAAATTA-CAGTCATCCG
1 ATCTCTTACCCCGAGCCTAGGGCAAATCACCA-TCAGCCA
* * *
22254121 ATCTCTTATCCCGAGCCTAGGGCAGATCACCATCAACCA
1 ATCTCTTACCCCGAGCCTAGGGCAAATCACCATCAGCCA
* ** * * ** * * **
22254160 ATCGCTTACCCTAAGCCTGGGGCAGATTGCAACCATTCA
1 ATCTCTTACCCCGAGCCTAGGGCAAATCACCATCAGCCA
* * * * **
22254199 ATCTTTTACCCCGAGCTTGGGGCAAATCACCGTCAATCA
1 ATCTCTTACCCCGAGCCTAGGGCAAATCACCATCAGCCA
22254238 ATCTCTTACCCCGAGCCT-GGG-ATAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCCTAGGGCA-A-ATCACCATCAGCCA
22254277 ATCTCTTACCCCGAG-CTAGGG
1 ATCTCTTACCCCGAGCCTAGGG
22254298 GCAGATTGCA
Statistics
Matches: 231, Mismatches: 58, Indels: 10
0.77 0.19 0.03
Matches are distributed among these distances:
37 1 0.00
38 8 0.03
39 220 0.95
40 2 0.01
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCCTAGGGCAAATCACCATCAGCCA
Found at i:22254125 original size:156 final size:155
Alignment explanation
Indices: 22253886--22254300 Score: 535
Period size: 156 Copynumber: 2.7 Consensus size: 155
22253876 TTGAAGATCT
* * * * * * *
22253886 GATCTTTTACCTCGAGCTTAGGGCAGATCACCATCAGGCAATCTATTTCCCCAAGCTTGAGGTAG
1 GATCTTTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTG-GGTAG
* * * *
22253951 ATTGCAGCCATCCGATCTCTTACCCCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCCC
65 ATTACAGTCATCCGATCTCTTACCCCGAGCTTGGGGCAAATCACCATCAACCAATCGCTTACCCC
*
22254016 GAGCCTGGGGCAGATTACAACCATTC
130 AAGCCTGGGGCAGATTACAACCATTC
*
22254042 GATCTTTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGTAA
1 GATCTTTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCT-GGGTAG
* * * * *
22254107 ATTACAGTCATCCGATCTCTTATCCCGAGCCTAGGGCAGATCACCATCAACCAATCGCTTACCCT
65 ATTACAGTCATCCGATCTCTTACCCCGAGCTTGGGGCAAATCACCATCAACCAATCGCTTACCCC
*
22254172 AAGCCTGGGGCAGATTGCAACCATTC
130 AAGCCTGGGGCAGATTACAACCATTC
* * * **
22254198 AATCTTTTACCCCGAGCTTGGGGCAAATCACCGTCAATCAATCTCTTACCCCGAGCCTGGGATAG
1 GATCTTTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGGG-TAG
* * * *
22254263 ATCACCA-TCAGCCAATCTCTTACCCCGAGCTAGGGGCA
65 ATTA-CAGTCATCCGATCTCTTACCCCGAGCTTGGGGCA
22254301 GATTGCAACC
Statistics
Matches: 224, Mismatches: 32, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
155 3 0.01
156 218 0.97
157 3 0.01
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (155 bp):
GATCTTTTACCCCGAGCTTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGTAGA
TTACAGTCATCCGATCTCTTACCCCGAGCTTGGGGCAAATCACCATCAACCAATCGCTTACCCCA
AGCCTGGGGCAGATTACAACCATTC
Found at i:22254317 original size:39 final size:40
Alignment explanation
Indices: 22253949--22254319 Score: 240
Period size: 39 Copynumber: 9.5 Consensus size: 40
22253939 AGCTTGAGGT
* * * *
22253949 AGATTGCAGCCATCCGATCTCTTACCCCGAG-CTTGGGGC
1 AGATTACAACCATCCAATCTCTTACCCCGAGCCTAGGGGC
* * * * *
22253988 AAATCACCATCAGCCAATCTCTTACCCCGAGCCT-GGGGC
1 AGATTACAACCATCCAATCTCTTACCCCGAGCCTAGGGGC
* * * *
22254027 AGATTACAACCATTCGATCTTTTACCCCGAGCTTA-GGGC
1 AGATTACAACCATCCAATCTCTTACCCCGAGCCTAGGGGC
* * * * * *
22254066 AAATCACCATCAGCCAATCTCTTACCCCGAGCCTA-GGGT
1 AGATTACAACCATCCAATCTCTTACCCCGAGCCTAGGGGC
* ** * *
22254105 AAATTACAGTCATCCGATCTCTTATCCCGAGCCTA-GGGC
1 AGATTACAACCATCCAATCTCTTACCCCGAGCCTAGGGGC
* * * * * **
22254144 AGATCACCATCAACCAATCGCTTACCCTAAGCCT-GGGGC
1 AGATTACAACCATCCAATCTCTTACCCCGAGCCTAGGGGC
* * * *
22254183 AGATTGCAACCATTCAATCTTTTACCCCGAG-CTTGGGGC
1 AGATTACAACCATCCAATCTCTTACCCCGAGCCTAGGGGC
* * ** * **
22254222 AAATCACCGTCAAT-CAATCTCTTACCCCGAGCCT-GGGAT
1 AGATTA-CAACCATCCAATCTCTTACCCCGAGCCTAGGGGC
* * * *
22254261 AGATCACCATCAGCCAATCTCTTACCCCGAG-CTAGGGGC
1 AGATTACAACCATCCAATCTCTTACCCCGAGCCTAGGGGC
*
22254300 AGATTGCAACCATCCAATCT
1 AGATTACAACCATCCAATCT
22254320 TTTAAAAAAA
Statistics
Matches: 248, Mismatches: 76, Indels: 16
0.73 0.22 0.05
Matches are distributed among these distances:
38 6 0.02
39 234 0.94
40 8 0.03
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (40 bp):
AGATTACAACCATCCAATCTCTTACCCCGAGCCTAGGGGC
Found at i:22256323 original size:30 final size:30
Alignment explanation
Indices: 22256287--22256683 Score: 259
Period size: 30 Copynumber: 13.4 Consensus size: 30
22256277 GAACCTTGTA
*
22256287 AAAATTACATTTTAACCCCTAAACTTTTTC
1 AAAATTACATTTTAACCCCTAAACTTTTCC
* * *
22256317 AAAATTACATTTTTTACCCTTAAAC-TTTCTA
1 AAAATTACA-TTTTAACCCCTAAACTTTTC-C
* * * *
22256348 AAAATCATATTTTGACCCCTAAACTTCTCC
1 AAAATTACATTTTAACCCCTAAACTTTTCC
* *
22256378 AAAATTACATTTTTACCCTTAAACTTTTCC
1 AAAATTACATTTTAACCCCTAAACTTTTCC
* * * * *
22256408 AAATTTAGATTTTAA-CCTTAAACTTCTCT
1 AAAATTACATTTTAACCCCTAAACTTTTCC
* * *
22256437 AAAATTACATTTTGA-CTCTAAACTTCTT-T
1 AAAATTACATTTTAACCCCTAAACTT-TTCC
*
22256466 AAAATTATATTTTAACCCGC-AAAC-TTTCC
1 AAAATTACATTTTAACCC-CTAAACTTTTCC
* * * * *
22256495 AAAAATCACATTTAAACCTCTAAA--GTCCC
1 -AAAATTACATTTTAACCCCTAAACTTTTCC
** * *
22256524 AAAATCGCATTTTAA-CCTTAAAATTTTCC
1 AAAATTACATTTTAACCCCTAAACTTTTCC
* *
22256553 AAAATTACATTTTGACCCCCAAAC-TTTCC
1 AAAATTACATTTTAACCCCTAAACTTTTCC
* **
22256582 TAAAATTATATTTTAA-CCCTAAACTCATCC
1 -AAAATTACATTTTAACCCCTAAACTTTTCC
* *
22256612 AAAATTACCATTTT-ACCCCTCAAAC-ATTCA
1 AAAATTA-CATTTTAACCCCT-AAACTTTTCC
*
22256642 AAAATTACTATTTT-ACCCCCAAA--TTTCC
1 AAAATTAC-ATTTTAACCCCTAAACTTTTCC
*
22256670 AAAAGTCACATTTT
1 AAAA-TTACATTTT
22256684 CAATCTCAAA
Statistics
Matches: 287, Mismatches: 61, Indels: 40
0.74 0.16 0.10
Matches are distributed among these distances:
27 5 0.02
28 27 0.09
29 93 0.32
30 134 0.47
31 28 0.10
ACGTcount: A:0.37, C:0.24, G:0.02, T:0.37
Consensus pattern (30 bp):
AAAATTACATTTTAACCCCTAAACTTTTCC
Found at i:22256630 original size:59 final size:58
Alignment explanation
Indices: 22256287--22256683 Score: 251
Period size: 59 Copynumber: 6.7 Consensus size: 58
22256277 GAACCTTGTA
* * * *
22256287 AAAATTACATTTTAACCCCTAAACTTTTTCAAAATTACATTTTTTACCCTTAAACTTT-CT
1 AAAATTATATTTTAA-CCCTAAACTCTTCCAAAATTACA--TTTTACCCCTAAACTTTCCT
* * *
22256347 AAAAATCATATTTTGACCCCTAAACT-TCTCCAAAATTACATTTTTACCCTTAAACTTTTCC-
1 -AAAATTATATTTT-AACCCTAAACTCT-TCCAAAATTACA-TTTTACCCCTAAAC-TTTCCT
* * * * * *
22256408 AAATTTAGATTTTAACCTTAAACT-TCTCTAAAATTACATTTTGA-CTCTAAAC-TTCTTT
1 AAAATTATATTTTAACCCTAAACTCT-TCCAAAATTACATTTT-ACCCCTAAACTTTC-CT
* * * * * *
22256466 AAAATTATATTTTAACCCGCAAACT-TTCCAAAAATCACATTTAAACCTCTAAA--GTCCC
1 AAAATTATATTTTAACCC-TAAACTCTTCC-AAAATTACATTT-TACCCCTAAACTTTCCT
*** * * * *
22256524 AAAATCGCATTTTAACCTTAAAATTTTCCAAAATTACATTTTGACCCCCAAACTTTCCT
1 AAAATTATATTTTAACCCTAAACTCTTCCAAAATTACATTTT-ACCCCTAAACTTTCCT
* * *
22256583 AAAATTATATTTTAACCCTAAACTCATCCAAAATTACCATTTTACCCCTCAAACATT-CA
1 AAAATTATATTTTAACCCTAAACTCTTCCAAAATTA-CATTTTACCCCT-AAACTTTCCT
* * *
22256642 AAAATTACTATTTTACCCCCAAA-T-TTCCAAAAGTCACATTTT
1 AAAATTA-TATTTTAACCCTAAACTCTTCCAAAA-TTACATTTT
22256684 CAATCTCAAA
Statistics
Matches: 268, Mismatches: 49, Indels: 41
0.75 0.14 0.11
Matches are distributed among these distances:
56 3 0.01
57 22 0.08
58 58 0.22
59 91 0.34
60 58 0.22
61 34 0.13
62 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.02, T:0.37
Consensus pattern (58 bp):
AAAATTATATTTTAACCCTAAACTCTTCCAAAATTACATTTTACCCCTAAACTTTCCT
Found at i:22256713 original size:30 final size:29
Alignment explanation
Indices: 22256660--22256732 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 29
22256650 TATTTTACCC
22256660 CCAAA-TTTCCAAAAGTCACATTTTCAA-T
1 CCAAATTTTCCAAAAGTCACATTTT-AATT
*
22256688 CTCAAATTTTCCAAAAGTTC-GATTTTAATT
1 C-CAAATTTTCCAAAAG-TCACATTTTAATT
*
22256718 CCAAGTTTTCCAAAA
1 CCAAATTTTCCAAAA
22256733 AATTCAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
28 1 0.03
29 19 0.49
30 17 0.44
31 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.05, T:0.36
Consensus pattern (29 bp):
CCAAATTTTCCAAAAGTCACATTTTAATT
Found at i:22257623 original size:318 final size:317
Alignment explanation
Indices: 22257024--22257628 Score: 721
Period size: 318 Copynumber: 1.9 Consensus size: 317
22257014 ATAAATCTTT
* * * * *
22257024 AAAACCGAGGTAATATCCTTTTCGTGTGGAAATCTCAAAAAATCATGCCCTAACGTGCTGGGTGT
1 AAAAACGAGGCAATATCCTTTTCGTGTGAAAATCTCAAAAAATCATGCCCAAACGTGCTGGATGT
* * * *
22257089 GATTTTTCGTATAATCTGCACAATCGAATATCCTCTTCCAAACTTTCCAAATGCCTTTTAATTTC
66 GATTCTTCGTATAATCTG-ACAATCGAATATCCTCTTCAAAACTTTCAAAATGCCTTTCAATTTC
* *
22257154 GAGATTCCGAGAACGTCGTGCCCTAATGTGTTGGACACGACTTCAATTCTCCGAGAAATTCGAAA
130 GAAATTCCGAGAACGTAGTGCCCTAATGTGTTGGACACGACTTCAATTCTCCGAGAAATTCGAAA
* * * * ** * *
22257219 TATACGAGCATTTTTCTTCAAATTTTATGTTTGAAAATCACGTGAAATAAGTTGTGTCCGAGGAT
195 TACACGAGCATTTTTCTTCAAATATTATGTTTAAAAATCAC-TGAAATAAGTTGAGAACAAAGAT
22257284 CGTATCTTGAACTTAATTCGAAATTTCGAGTTCTCAAAATATACAAATAATTTTAAAAC
259 CGTATCTTGAACTTAATTCGAAATTTCGAGTTCTCAAAATATACAAATAATTTTAAAAC
**
22257343 AAAAACGAGGCAATATCC-TTTCGTGTGAAAA-CTTTGAAAAATCATGCCCAAACGTGCTGGATG
1 AAAAACGAGGCAATATCCTTTTCGTGTGAAAATC-TCAAAAAATCATGCCCAAACGTGCTGGATG
22257406 TGA-TCTTCGTATAATTCGTG-CAATCGAATATCCTC-TCTAAAATCTTTCAAAATGTCC-TTCA
65 TGATTCTTCGTATAA-TC-TGACAATCGAATATCCTCTTC-AAAA-CTTTCAAAATG-CCTTTCA
* *
22257467 ATTTCGAAATTCCGAGAACGTAGTGCCCTAACT-TGTTGGACACGATTTCAATTCTTCGAGAAAT
125 ATTTCGAAATTCCGAGAACGTAGTGCCCTAA-TGTGTTGGACACGACTTCAATTCTCCGAGAAAT
* * **
22257531 TCGAAATGCAC-AGACGATTTTTC-TCAAATATTATTTTTAAAAATCA-TGCAAAGT-TTTCTGA
189 TCGAAATACACGAG-C-ATTTTTCTTCAAATATTATGTTTAAAAATCACTG-AAA-TAAGT-TGA
** *
22257592 GAACAAAGATCGTAT-TCTGAGTTTTATTCGAAATTTC
249 GAACAAAGATCGTATCT-TGAACTTAATTCGAAATTTC
22257629 AAAGTTTTAA
Statistics
Matches: 243, Mismatches: 30, Indels: 27
0.81 0.10 0.09
Matches are distributed among these distances:
316 4 0.02
317 36 0.15
318 175 0.72
319 28 0.12
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (317 bp):
AAAAACGAGGCAATATCCTTTTCGTGTGAAAATCTCAAAAAATCATGCCCAAACGTGCTGGATGT
GATTCTTCGTATAATCTGACAATCGAATATCCTCTTCAAAACTTTCAAAATGCCTTTCAATTTCG
AAATTCCGAGAACGTAGTGCCCTAATGTGTTGGACACGACTTCAATTCTCCGAGAAATTCGAAAT
ACACGAGCATTTTTCTTCAAATATTATGTTTAAAAATCACTGAAATAAGTTGAGAACAAAGATCG
TATCTTGAACTTAATTCGAAATTTCGAGTTCTCAAAATATACAAATAATTTTAAAAC
Found at i:22262394 original size:25 final size:25
Alignment explanation
Indices: 22262355--22262402 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22262345 TAATATAAAT
* *
22262355 TAAATTTTAAAATTATATTAAAAAG
1 TAAATTATAAAATTAAATTAAAAAG
*
22262380 TAAATTATAATATTAAATTAAAA
1 TAAATTATAAAATTAAATTAAAA
22262403 TAAAAAAAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (25 bp):
TAAATTATAAAATTAAATTAAAAAG
Found at i:22262399 original size:13 final size:13
Alignment explanation
Indices: 22262351--22262399 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
22262341 AAAATAATAT
*
22262351 AAATTAAATTTTA
1 AAATTAAATTATA
*
22262364 AAATTATATTA-A
1 AAATTAAATTATA
*
22262376 AAAGTAAATTATA
1 AAATTAAATTATA
*
22262389 ATATTAAATTA
1 AAATTAAATTA
22262400 AAATAAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
12 10 0.34
13 19 0.66
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (13 bp):
AAATTAAATTATA
Found at i:22264314 original size:20 final size:20
Alignment explanation
Indices: 22264289--22264327 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22264279 TTAATAATCC
*
22264289 TTTATATACTATGTTATTTT
1 TTTATATACTATGTAATTTT
*
22264309 TTTATATATTATGTAATTT
1 TTTATATACTATGTAATTT
22264328 AAAACACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTATATACTATGTAATTTT
Found at i:22264787 original size:3 final size:3
Alignment explanation
Indices: 22264779--22264812 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
22264769 TAAGTCTAGG
22264779 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
22264813 AATAATAGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:22270211 original size:67 final size:66
Alignment explanation
Indices: 22270132--22270257 Score: 189
Period size: 67 Copynumber: 1.9 Consensus size: 66
22270122 TCATCCACCT
*
22270132 TTTAACATGAAGATAAAGCAATAGATAAATCTTCCAAAAATACTGAATACCTATTGGGACATTTT
1 TTTAACACGAAGATAAAGCAATAGATAAA-CTTCCAAAAATACTGAATACCTATTGGGACATTTT
22270197 CC
65 CC
* ** * *
22270199 TTTAACACGAAGATAAAGGAATAGATAAACTTCCAATGATACTGAATATCTGTTGGGAC
1 TTTAACACGAAGATAAAGCAATAGATAAACTTCCAAAAATACTGAATACCTATTGGGAC
22270258 CTTAGCTATC
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
66 26 0.49
67 27 0.51
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (66 bp):
TTTAACACGAAGATAAAGCAATAGATAAACTTCCAAAAATACTGAATACCTATTGGGACATTTTC
C
Found at i:22302282 original size:4 final size:4
Alignment explanation
Indices: 22302273--22302299 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
22302263 AAATTATTAA
22302273 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
22302300 ACACACAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:22306084 original size:46 final size:46
Alignment explanation
Indices: 22306032--22306128 Score: 115
Period size: 46 Copynumber: 2.1 Consensus size: 46
22306022 CCCAAGGGTG
* *
22306032 TTACAAAATACATCACACAGACATCA-CAGAATACGCTACAAAGGCT
1 TTACAAAATACACCACACAGACATCACCA-AATACGCCACAAAGGCT
** * * *
22306078 TTACAAAATATGCCACACAGGCTTTACCAAATACGCCACAAAGGCT
1 TTACAAAATACACCACACAGACATCACCAAATACGCCACAAAGGCT
22306124 TTACA
1 TTACA
22306129 GAACATTAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 41 0.95
47 2 0.05
ACGTcount: A:0.42, C:0.27, G:0.11, T:0.20
Consensus pattern (46 bp):
TTACAAAATACACCACACAGACATCACCAAATACGCCACAAAGGCT
Found at i:22306087 original size:23 final size:23
Alignment explanation
Indices: 22306061--22306128 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
22306051 GACATCACAG
*
22306061 AATACGCTACAAAGGCTTTACAA
1 AATACGCCACAAAGGCTTTACAA
* * *
22306084 AATATGCCACACAGGCTTTACCA
1 AATACGCCACAAAGGCTTTACAA
22306107 AATACGCCACAAAGGCTTTACA
1 AATACGCCACAAAGGCTTTACA
22306129 GAACATTAAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.40, C:0.26, G:0.13, T:0.21
Consensus pattern (23 bp):
AATACGCCACAAAGGCTTTACAA
Found at i:22318037 original size:12 final size:12
Alignment explanation
Indices: 22318020--22318044 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22318010 GACGTGCTAT
22318020 TAAAAAAAGAGG
1 TAAAAAAAGAGG
22318032 TAAAAAAAGAGG
1 TAAAAAAAGAGG
22318044 T
1 T
22318045 CGAGATGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (12 bp):
TAAAAAAAGAGG
Found at i:22318115 original size:19 final size:18
Alignment explanation
Indices: 22318084--22318122 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
22318074 AAACCCAAAG
* *
22318084 AAAGGAAAGAAGAATAAA
1 AAAGGAAAAAAGAAGAAA
22318102 AAAGAGAAAAAAGAAGAAA
1 AAAG-GAAAAAAGAAGAAA
22318121 AA
1 AA
22318123 GCCAAGATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.03
Consensus pattern (18 bp):
AAAGGAAAAAAGAAGAAA
Found at i:22319934 original size:29 final size:29
Alignment explanation
Indices: 22319892--22319949 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
22319882 CTTATACCCC
* * *
22319892 TAAAGCTGTAGAGGGGCAGATTGAAGCTG
1 TAAAGCTGTAGAGGGACAAATTAAAGCTG
22319921 TAAAGCTGTAGAGGGACAAATTAAAGCTG
1 TAAAGCTGTAGAGGGACAAATTAAAGCTG
22319950 CAGAAGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.36, C:0.10, G:0.33, T:0.21
Consensus pattern (29 bp):
TAAAGCTGTAGAGGGACAAATTAAAGCTG
Found at i:22319977 original size:50 final size:50
Alignment explanation
Indices: 22319921--22320084 Score: 240
Period size: 50 Copynumber: 3.3 Consensus size: 50
22319911 ATTGAAGCTG
* * * *
22319921 TAAAGCTGTAGAGGGACAAATTAAAGCTGCAGAAGCAAATCTTATACCCC
1 TAAAGCTGTAGAGGGGCAGATTGAAGCTACAGAAGCAAATCTTATACCCC
*
22319971 TAAAGCTGTAGAGGGGCAGATTGAAGCTACAGAAGCAAATCTTATACTCC
1 TAAAGCTGTAGAGGGGCAGATTGAAGCTACAGAAGCAAATCTTATACCCC
* *
22320021 TAAAGTTGTAAAGGGGCAGATTGAAGCTACAGAA-CAAAATCTTATACCCC
1 TAAAGCTGTAGAGGGGCAGATTGAAGCTACAGAAGC-AAATCTTATACCCC
*
22320071 TAAAGTTGTAGAGG
1 TAAAGCTGTAGAGG
22320085 AGCGGATTAA
Statistics
Matches: 104, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
49 1 0.01
50 103 0.99
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (50 bp):
TAAAGCTGTAGAGGGGCAGATTGAAGCTACAGAAGCAAATCTTATACCCC
Found at i:22320333 original size:100 final size:101
Alignment explanation
Indices: 22320214--22320664 Score: 261
Period size: 100 Copynumber: 4.5 Consensus size: 101
22320204 ACGAACCTCA
* * * * *
22320214 ATCTCCTTTAAGTTTCAGTGAAATGGAGCAAAGTTACAACACCAAACCCTATACCTTTGAAGTTG
1 ATCTCCCTGAAGTTGCAGTGAAATGGAGTAAAGTTACAACACCAAATCCTATACCTTTGAAGTTG
* **
22320279 TAGTGGGTC-GATTAAAGCCATGAAAGTGAATCTTT
66 AAGTGGGTCAGATTAAAGCCATGAAAAAGAATCTTT
* *
22320314 ATCTCCCTGAAGTTGCAGTGGAGCAA--GA-TAAAGCTACAACACCAAATCCTAT-CTTCTTGAA
1 ATCTCCCTGAAGTTGCAGT-GA--AATGGAGTAAAGTTACAACACCAAATCCTATACCT-TTGAA
* * * * * * *
22320375 GTTGCAGTGAAG-CGGATT-AA-CACAAGTAACAG-ATCTTA
62 GTTGAAGTG-GGTCAGATTAAAGC-CATGAAAAAGAATCTTT
* * * * * **
22320413 ATCTCCTTGAAGTTGTAGTGGAATGGAGTAAAGTTAAAACACAAAATCCTATACCCCTGAAGTT-
1 ATCTCCCTGAAGTTGCAGTGAAATGGAGTAAAGTTACAACACCAAATCCTATACCTTTGAAGTTG
*
22320477 AAGTGGGTCAAATTAAAGCCATGAAAACA-AATCTTT
66 AAGTGGGTCAGATTAAAGCCATGAAAA-AGAATCTTT
* * * * ** *
22320513 ATCTCCCTAAAGTTACAGTG-AA-GCAAGATAAAGCTACGGCACCAAATCCTAT-CTTCTTGAAG
1 ATCTCCCTGAAGTTGCAGTGAAATG-GAG-TAAAGTTACAACACCAAATCCTATACCT-TTGAAG
* * * * * * * **
22320575 TTGCAGTGAAG-CGGATTAAA-ACAAGTAACAG-ATCTCA
63 TTGAAGTG-GGTCAGATTAAAGCCATGAAAAAGAATCTTT
* * ** * *
22320612 ATCTCCCTAAATTTATAGTGGAATGGAGTGAAGTTACAACACCAAATCCTATA
1 ATCTCCCTGAAGTTGCAGTGAAATGGAGTAAAGTTACAACACCAAATCCTATA
22320665 TCCCTTAAGT
Statistics
Matches: 265, Mismatches: 61, Indels: 50
0.70 0.16 0.13
Matches are distributed among these distances:
96 2 0.01
97 1 0.00
98 12 0.05
99 108 0.41
100 118 0.45
101 21 0.08
102 1 0.00
103 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (101 bp):
ATCTCCCTGAAGTTGCAGTGAAATGGAGTAAAGTTACAACACCAAATCCTATACCTTTGAAGTTG
AAGTGGGTCAGATTAAAGCCATGAAAAAGAATCTTT
Found at i:22320367 original size:50 final size:50
Alignment explanation
Indices: 22320313--22320582 Score: 146
Period size: 50 Copynumber: 5.4 Consensus size: 50
22320303 AGTGAATCTT
22320313 TATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTACAACACCAAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTACAACACCAAATCC
* * * * * * * * *
22320363 TATCTTCTTGAAGTTGCAGTGAAGC-GGATTAA-C-ACAAGTAACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTACAA-CACCAAATCC
* * * * * *
22320411 TAATCTCCTTGAAGTTGTAGTGGA--ATGGAGTAAAGTTAAAACACAAAATCC
1 T-ATCTCCCTGAAGTTGCAGTGGAGCA-AGA-TAAAGCTACAACACCAAATCC
* * * * *
22320462 TATAC-CCCTGAAGTT-AAGTGG-GTCAA-ATTAAAGCCATGAA-AACAAATCTT
1 TAT-CTCCCTGAAGTTGCAGTGGAG-CAAGA-TAAAGCTA-CAACACCAAATC-C
* * * **
22320512 TATCTCCCTAAAGTTACAGTGAAGCAAGATAAAGCTACGGCACCAAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTACAACACCAAATCC
* *
22320562 TATCTTCTTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTG
22320583 AAGCGGATTA
Statistics
Matches: 159, Mismatches: 43, Indels: 36
0.67 0.18 0.15
Matches are distributed among these distances:
47 4 0.03
48 8 0.05
49 46 0.29
50 67 0.42
51 29 0.18
52 5 0.03
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (50 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTACAACACCAAATCC
Found at i:22320440 original size:199 final size:198
Alignment explanation
Indices: 22320187--22320676 Score: 669
Period size: 199 Copynumber: 2.5 Consensus size: 198
22320177 TTGTAAAAGG
* * * * *
22320187 GCGGAGTAAAACAAGTAAC-GAACCTCAATCTCCTTTAAGTTTCAGTGAAATGGAGCAAAGTTAC
1 GCGGATTAAAACAAGTAACAG-ATCTCAATCTCCTTAAAGTTT-AGTGGAATGGAGTAAAGTTAC
* ** * * ***
22320251 AACACCAAACCCTATACCTTTGAAGTTGTAGTGGGTC-GATTAAAGCCATGAAAGTGAATCTTTA
64 AACACCAAATCCTATACCCCTGAAGTT-AAGTGGGTCAAATTAAAGCCATGAAAACAAATCTTTA
* * *
22320315 TCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTACAACACCAAATCCTATCTTCTTGAAGTTGC
128 TCTCCCTAAAGTTACAGTGAAGCAAGATAAAGCTACAACACCAAATCCTATCTTCTTGAAGTTGC
22320380 AGTGAA
193 AGTGAA
* * * *
22320386 GCGGATTAACACAAGTAACAGATCTTAATCTCCTTGAAGTTGTAGTGGAATGGAGTAAAGTTAAA
1 GCGGATTAAAACAAGTAACAGATCTCAATCTCCTTAAAGTT-TAGTGGAATGGAGTAAAGTTACA
*
22320451 ACACAAAATCCTATACCCCTGAAGTTAAGTGGGTCAAATTAAAGCCATGAAAACAAATCTTTATC
65 ACACCAAATCCTATACCCCTGAAGTTAAGTGGGTCAAATTAAAGCCATGAAAACAAATCTTTATC
**
22320516 TCCCTAAAGTTACAGTGAAGCAAGATAAAGCTACGGCACCAAATCCTATCTTCTTGAAGTTGCAG
130 TCCCTAAAGTTACAGTGAAGCAAGATAAAGCTACAACACCAAATCCTATCTTCTTGAAGTTGCAG
22320581 TGAA
195 TGAA
* * *
22320585 GCGGATTAAAACAAGTAACAGATCTCAATCTCCCTAAATTTATAGTGGAATGGAGTGAAGTTACA
1 GCGGATTAAAACAAGTAACAGATCTCAATCTCCTTAAAGTT-TAGTGGAATGGAGTAAAGTTACA
* *
22320650 ACACCAAATCCTATATCCCTTAAGTTA
65 ACACCAAATCCTATACCCCTGAAGTTA
22320677 CTGTGGATCA
Statistics
Matches: 255, Mismatches: 33, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
198 8 0.03
199 245 0.96
200 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (198 bp):
GCGGATTAAAACAAGTAACAGATCTCAATCTCCTTAAAGTTTAGTGGAATGGAGTAAAGTTACAA
CACCAAATCCTATACCCCTGAAGTTAAGTGGGTCAAATTAAAGCCATGAAAACAAATCTTTATCT
CCCTAAAGTTACAGTGAAGCAAGATAAAGCTACAACACCAAATCCTATCTTCTTGAAGTTGCAGT
GAA
Found at i:22320445 original size:99 final size:99
Alignment explanation
Indices: 22320308--22320663 Score: 307
Period size: 99 Copynumber: 3.6 Consensus size: 99
22320298 ATGAAAGTGA
* * *
22320308 ATCTTTATCTCCCTGAAGTTGCAGTGG-AGCAAGATAAAGCTACAACACCAAATCCTATCTTCTT
1 ATCTTAATCTCCCTAAAGTTACAGTGGAAGCAAGATAAAGCTACAACACCAAATCCTATCTTCTT
22320372 GAAGTTGCAGTGAAGCGGATTAACACAAGTAACAG
66 GAAGTTGCAGTGAAGCGGATTAA-ACAAGTAACAG
* * ** * * * * *
22320407 ATCTTAATCTCCTTGAAGTTGTAGTGGAATG-GAG-TAAAGTTAAAACACAAAATCCTATAC-CC
1 ATCTTAATCTCCCTAAAGTTACAGTGGAA-GCAAGATAAAGCTACAACACCAAATCCTAT-CTTC
* * * ** * * *
22320469 CTGAAGTT-AAGTG-GGTCAAATTAAAGCCATGAAAACAA
64 TTGAAGTTGCAGTGAAG-CGGATTAAA--CAAG-TAACAG
* **
22320507 ATCTTTATCTCCCTAAAGTTACAGT-GAAGCAAGATAAAGCTACGGCACCAAATCCTATCTTCTT
1 ATCTTAATCTCCCTAAAGTTACAGTGGAAGCAAGATAAAGCTACAACACCAAATCCTATCTTCTT
22320571 GAAGTTGCAGTGAAGCGGATTAAAACAAGTAACAG
66 GAAGTTGCAGTGAAGCGGATT-AAACAAGTAACAG
* * * * * *
22320606 ATCTCAATCTCCCTAAATTTATAGTGGAATG-GAG-TGAAGTTACAACACCAAATCCTAT
1 ATCTTAATCTCCCTAAAGTTACAGTGGAA-GCAAGATAAAGCTACAACACCAAATCCTAT
22320664 ATCCCTTAAG
Statistics
Matches: 197, Mismatches: 45, Indels: 30
0.72 0.17 0.11
Matches are distributed among these distances:
97 2 0.01
98 11 0.06
99 107 0.54
100 63 0.32
101 10 0.05
102 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (99 bp):
ATCTTAATCTCCCTAAAGTTACAGTGGAAGCAAGATAAAGCTACAACACCAAATCCTATCTTCTT
GAAGTTGCAGTGAAGCGGATTAAACAAGTAACAG
Found at i:22325054 original size:176 final size:176
Alignment explanation
Indices: 22324760--22325109 Score: 646
Period size: 176 Copynumber: 2.0 Consensus size: 176
22324750 AATTCTTCTT
*
22324760 ATTCGATCATACCATAATTAACCATTCTTTGATTCAATTATTCTTTGATCCCATTTTGTCTCTAT
1 ATTCGATCATACCACAATTAACCATTCTTTGATTCAATTATTCTTTGATCCCATTTTGTCTCTAT
* *
22324825 GCTGTGCATATAAGTGATGTTGTTGTTAACTTGGAGCCTCATTTTGAGAAGGACATGTGTCTAGA
66 GCTGTGCATATAAGTGACGTTGTTGTTAACTTGGAGCCTCATTTTGAGAAGGACATGTGTCCAGA
*
22324890 CAAACTTCAAGACTTTGAAAATGATCAAGAATGTAACTTGTCTCTC
131 AAAACTTCAAGACTTTGAAAATGATCAAGAATGTAACTTGTCTCTC
22324936 ATTCGATCATACCACAATTAACCATTCTTTGATTCAATTATTCTTTGATCCCATTTTGTCTCTAT
1 ATTCGATCATACCACAATTAACCATTCTTTGATTCAATTATTCTTTGATCCCATTTTGTCTCTAT
*
22325001 GCTGTGCATATGAGTGACGTTGTTGTTAACTTGGAGCCTCATTTTGAGAAGGACATGTGTCCAGA
66 GCTGTGCATATAAGTGACGTTGTTGTTAACTTGGAGCCTCATTTTGAGAAGGACATGTGTCCAGA
*
22325066 AAAACTTCAGGACTTTGAAAATGATCAAGAATGTAACTTGTCTC
131 AAAACTTCAAGACTTTGAAAATGATCAAGAATGTAACTTGTCTC
22325110 CCGATCTGTT
Statistics
Matches: 168, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
176 168 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (176 bp):
ATTCGATCATACCACAATTAACCATTCTTTGATTCAATTATTCTTTGATCCCATTTTGTCTCTAT
GCTGTGCATATAAGTGACGTTGTTGTTAACTTGGAGCCTCATTTTGAGAAGGACATGTGTCCAGA
AAAACTTCAAGACTTTGAAAATGATCAAGAATGTAACTTGTCTCTC
Found at i:22326346 original size:18 final size:18
Alignment explanation
Indices: 22326323--22326381 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
22326313 TTTCACCAAA
*
22326323 AAAAAGAAAAAAAAAGAG
1 AAAAAGAAAAGAAAAGAG
22326341 AAAAAGAAAAGGAAAAG-G
1 AAAAAGAAAA-GAAAAGAG
22326359 AAAAA-AAGAAGAAAAGA-
1 AAAAAGAA-AAGAAAAGAG
22326376 AAAAAG
1 AAAAAG
22326382 GGGAGGTCGA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
17 13 0.36
18 18 0.50
19 5 0.14
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAAGAAAAGAG
Found at i:22326348 original size:6 final size:6
Alignment explanation
Indices: 22326323--22326379 Score: 57
Period size: 6 Copynumber: 9.8 Consensus size: 6
22326313 TTTCACCAAA
* * *
22326323 AAAAAG AAAAA- AAAAGAG AAAAAG AAAAGG AAAAGG AAAAA- AAGAAG
1 AAAAAG AAAAAG AAAA-AG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
22326370 -AAAAG AAAAA
1 AAAAAG AAAAA
22326380 AGGGGAGGTC
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
5 12 0.28
6 27 0.63
7 4 0.09
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:22326356 original size:29 final size:28
Alignment explanation
Indices: 22326324--22326378 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
22326314 TTCACCAAAA
22326324 AAAAGAAAAAAAA-AGAGAAAAAGAAAAGG
1 AAAAGAAAAAAAAGA-AG-AAAAGAAAAGG
*
22326353 AAAAGGAAAAAAAGAAGAAAAGAAAA
1 AAAAGAAAAAAAAGAAGAAAAGAAAA
22326379 AAGGGGAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 9 0.38
29 14 0.58
30 1 0.04
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (28 bp):
AAAAGAAAAAAAAGAAGAAAAGAAAAGG
Found at i:22327334 original size:98 final size:98
Alignment explanation
Indices: 22327157--22327367 Score: 273
Period size: 98 Copynumber: 2.2 Consensus size: 98
22327147 TCTACAGGTT
* * * *
22327157 TGAAGGGAAAGATT-AAACCTGCAATGGTAAATCTAATACCCTAGAGATATGAAGAGAAAGGTTA
1 TGAAGGGAAAGATTGAAGCC-GCGACGGTGAATCTAATACCCTAGAGATATGAAGAGAAAGGTTA
* * * *
22327221 AAGCCGCAACGGCGAACCTTGTACCTTAGGGATG
65 AAGCCGCAACAGCGAACCTTGCACCCTAGAGATG
* * * * *
22327255 TGATGGGAAAGATTGAAGCCGCGACGGTGAATCTTATACCCTAGAGTTATTG-AGGGAAAGGTTG
1 TGAAGGGAAAGATTGAAGCCGCGACGGTGAATCTAATACCCTAGAGATA-TGAAGAGAAAGGTTA
22327319 AAGCCGCAACAGCGAACCTTGCACCCTAGAGATG
65 AAGCCGCAACAGCGAACCTTGCACCCTAGAGATG
22327353 TGAAGGGAAAGATTG
1 TGAAGGGAAAGATTG
22327368 GGGCCACAAC
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
98 91 0.94
99 6 0.06
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (98 bp):
TGAAGGGAAAGATTGAAGCCGCGACGGTGAATCTAATACCCTAGAGATATGAAGAGAAAGGTTAA
AGCCGCAACAGCGAACCTTGCACCCTAGAGATG
Found at i:22327345 original size:49 final size:48
Alignment explanation
Indices: 22327193--22327363 Score: 159
Period size: 49 Copynumber: 3.5 Consensus size: 48
22327183 GTAAATCTAA
* *
22327193 TACCCTAGAG-ATATGAAGAGAAAGGTTAAAGCCGCAACGGCGAACCTTG
1 TACCCTAGAGTAT-TG-AGGGAAAGGTTGAAGCCGCAACGGCGAACCTTG
* * * * * * *
22327242 TACCTTAG-GGATGTGATGGGAAAGATTGAAGCCGCGACGGTGAATCTTA
1 TACCCTAGAGTAT-TGA-GGGAAAGGTTGAAGCCGCAACGGCGAACCTTG
*
22327291 TACCCTAGAGTTATTGAGGGAAAGGTTGAAGCCGCAACAGCGAACCTTG
1 TACCCTAGAG-TATTGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTG
*
22327340 CACCCTAGAG-ATGTGAAGGGAAAG
1 TACCCTAGAGTAT-TG-AGGGAAAG
22327364 ATTGGGGCCA
Statistics
Matches: 98, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
47 2 0.02
48 4 0.04
49 86 0.88
50 4 0.04
51 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.30, T:0.19
Consensus pattern (48 bp):
TACCCTAGAGTATTGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTG
Found at i:22327386 original size:98 final size:98
Alignment explanation
Indices: 22327185--22327394 Score: 251
Period size: 98 Copynumber: 2.1 Consensus size: 98
22327175 CTGCAATGGT
* * * *
22327185 AAATCTAATACCCTAGAGATATGAAGAGAAAGGTTAAAGCCGCAACGGCGAACCTTGTACCTTAG
1 AAATCTTATACCCTAGAGATATGAAGAGAAAGGTTAAAGCCGCAACAGCGAACCTTGCACCCTAG
* * * * **
22327250 GGATGTGATGGGAAAGATTGAAGCCGCGACGGT
66 AGATGTGAAGGGAAAGATTGAAGCCACAACGAC
* * * *
22327283 GAATCTTATACCCTAGAGTTATTG-AGGGAAAGGTTGAAGCCGCAACAGCGAACCTTGCACCCTA
1 AAATCTTATACCCTAGAGATA-TGAAGAGAAAGGTTAAAGCCGCAACAGCGAACCTTGCACCCTA
**
22327347 GAGATGTGAAGGGAAAGATTGGGGCCACAACGAC
65 GAGATGTGAAGGGAAAGATTGAAGCCACAACGAC
*
22327381 AAATCTTACACCCT
1 AAATCTTATACCCT
22327395 GAAGATGAGG
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
98 91 0.98
99 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.27, T:0.20
Consensus pattern (98 bp):
AAATCTTATACCCTAGAGATATGAAGAGAAAGGTTAAAGCCGCAACAGCGAACCTTGCACCCTAG
AGATGTGAAGGGAAAGATTGAAGCCACAACGAC
Found at i:22327720 original size:40 final size:40
Alignment explanation
Indices: 22327665--22327743 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
22327655 TACAATCATC
* *
22327665 CAATCTTTTACCCTAATCAGAGGATAGATTGAAGACCATT
1 CAATCTTTTACCCTAATCAGAGGACAAATTGAAGACCATT
*
22327705 CAATCTTTTACCCTAATTAGAGGACAAATTGAAGACCAT
1 CAATCTTTTACCCTAATCAGAGGACAAATTGAAGACCAT
22327744 CAAATATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (40 bp):
CAATCTTTTACCCTAATCAGAGGACAAATTGAAGACCATT
Found at i:22327810 original size:40 final size:40
Alignment explanation
Indices: 22327761--22328883 Score: 1023
Period size: 40 Copynumber: 28.4 Consensus size: 40
22327751 TTTTGAAGGT
* * *
22327761 CATCTAATCTTTTACCTTAACTAGAGGGCAGATTGAAGAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* ** *
22327801 CATCCAATCTCTTACCCCGACCATAGGGCAGATTGAAG--
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* *
22327839 CAGTCCAATCTTTTACCCTAACCAGAGGACAGATTGAAG-T
1 CA-TCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* * **
22327879 CATTCAATCTCTTACCCCGACCATGA-GGCAGATTGAAG-C
1 CATCCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGAC
* *
22327918 AATCCAATCTTTTACCCTAACCAGAGGGAAGATTGAAGAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* * * *
22327958 CATCCAATCTTTTACCCTAATCAAAGGGCAGATAGAAAAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* *
22327998 CAT-CAGATCTTTTACCCTAATCAGAGGACAGATTGAAGAC
1 CATCCA-ATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* * *
22328038 CATCTAATCGTTTACCCTAATCAGAGGGCAGATTGAAGAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* * *
22328078 CATCTAATCGTTTACCCTAATCAGAGGGCAGATTGAAGAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
*
22328118 CATCCAATCTTTTACCCTAACTAGAGGGCAGATTGAAGAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* * * * * *
22328158 CACCCAATCTCTTACACC-GATCATG-GGGTAGA-TAAAGTA-
1 CATCCAATCTTTTAC-CCTAACCA-GAGGGCAGATTGAAG-AC
* *
22328197 -GTCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAG-T
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* * **
22328235 CATTCAATCTCTTACCCCGACCATG-GGGCAGATTGAAG-C
1 CATCCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGAC
* *
22328274 AATCCAATTTTTTACCCT-ACCGAGAGGGCAGATTGAAGAC
1 CATCCAATCTTTTACCCTAACC-AGAGGGCAGATTGAAGAC
* * * *
22328314 CATCCAATCTTTTACCTTAACTAGAGGACAGATTGAAGGC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* * * *
22328354 CATCTAATCTCTTACCCCAATCATGA-GGCAGATTGAAG-C
1 CATCCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGAC
* *
22328393 AATCCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
** * * * *
22328433 CATCCAATCTTTTACCCCGA-CTGTGGGGCAAATTAAAG-C
1 CATCCAATCTTTTACCCTAACCAG-AGGGCAGATTGAAGAC
* *
22328472 AATCTAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* * * *
22328512 CATCCGATCTCTAACCCTGACCATG-GGGCAGATTGAAGTA-
1 CATCCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAG-AC
* *
22328552 -ACCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAT
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* * * * *
22328591 CATTCGATCTCTAACCCTGACCATG-GGGCAGATTGAAGTA-
1 CATCCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAG-AC
*
22328631 -ACCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* * * * * *
22328670 CATTCGATCTCTTATCC-GACCATG-GGGTAGATTGAAG-C
1 CATCCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGAC
* * *
22328708 AATCCAATTTTTTACCCTAACCAGAGAGCAGATTGAAGAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
** * * * *
22328748 CATCTGATCTCTTACCCCAATCATGA-GGCAGATT-AAAAC
1 CATCCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGAC
*
22328787 AATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
* * * * *
22328827 TATTCAATCTCTTACCCTGACCATGA-GGCAGATT-AAAAC
1 CATCCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGAC
*
22328866 AATCCAATCTTTTACCCT
1 CATCCAATCTTTTACCCT
22328884 TAAAACTATA
Statistics
Matches: 878, Mismatches: 161, Indels: 89
0.78 0.14 0.08
Matches are distributed among these distances:
37 3 0.00
38 49 0.06
39 355 0.40
40 455 0.52
41 16 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (40 bp):
CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGAC
Found at i:22328398 original size:79 final size:79
Alignment explanation
Indices: 22327766--22328883 Score: 1077
Period size: 79 Copynumber: 14.2 Consensus size: 79
22327756 AAGGTCATCT
* *
22327766 AATCTTTTACCTTAACTAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCAT-AGGGC
1 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGA-GGC
*
22327830 AGATTGAAGCAGTCC
65 AGATTGAAGCAATCC
* * *
22327845 AATCTTTTACCCTAACCAGAGGACAGATTGAAG-TCATTCAATCTCTTACCCCGACCATGAGGCA
1 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCA
22327909 GATTGAAGCAATCC
66 GATTGAAGCAATCC
* * ** * *
22327923 AATCTTTTACCCTAACCAGAGGGAAGATTGAAGACCATCCAATCTTTTACCCTAATCA-AAGGGC
1 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGA-GGC
* * *
22327987 AGATAGAAAACCAT-C
65 AGATTG-AAGCAATCC
* * * ** *
22328002 AGATCTTTTACCCTAATCAGAGGACAGATTGAAGACCATCTAATCGT-TTACCCTAATCA-GAGG
1 A-ATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATC-TCTTACCCCGACCATGA-G
* *
22328065 GCAGATTGAAGACCATCT
63 GCAGATTGAAG-CAATCC
* * * ** *
22328083 AATCGTTTACCCTAATCAGAGGGCAGATTGAAGACCATCCAATCTTTTACCCTAACTA-GAGGGC
1 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGA-GGC
* *
22328147 AGATTGAAGACCACCC
65 AGATTGAAG-CAATCC
* * * * * * * **
22328163 AATCTCTTACACC-GATCATG-GGGTAGA-TAAAGTA--GTCCAATCTTTTACCCTAACCA-GAG
1 AATCTTTTAC-CCTAACCA-GAGGGCAGATTGAAG-ACCATCCAATCTCTTACCCCGACCATGA-
*
22328222 GGCAGATTGAAGTC-ATTC
62 GGCAGATTGAAG-CAATCC
* ** * * * *
22328240 AATCTCTTACCCCGACCATG-GGGCAGATTGAAG-CAATCCAATTTTTTA-CCCTACCGA-GAGG
1 AATCTTTTACCCTAACCA-GAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACC-ATGA-G
*
22328301 GCAGATTGAAGACCATCC
63 GCAGATTGAAG-CAATCC
* * * * * * *
22328319 AATCTTTTACCTTAACTAGAGGACAGATTGAAGGCCATCTAATCTCTTACCCCAATCATGAGGCA
1 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCA
22328384 GATTGAAGCAATCC
66 GATTGAAGCAATCC
* * ** *
22328398 AATCTTTTACCCTAATCAGAGGGCAGATTGAAGACCATCCAATCTTTTACCCCGACTGTGGGGCA
1 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCA
* * *
22328463 AATTAAAGCAATCT
66 GATTGAAGCAATCC
* * * *
22328477 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCTCTAACCCTGACCATGGGGCA
1 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCA
* *
22328542 GATTGAAGTAACCC
66 GATTGAAGCAATCC
* * * * * *
22328556 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGATCATTCGATCTCTAACCCTGACCATGGGGCA
1 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCA
* *
22328621 GATTGAAGTAACCC
66 GATTGAAGCAATCC
* * * * *
22328635 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATTCGATCTCTTA-TCCGACCATGGGGTA
1 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCA
22328699 GATTGAAGCAATCC
66 GATTGAAGCAATCC
* * ** * *
22328713 AATTTTTTACCCTAACCAGAGAGCAGATTGAAGACCATCTGATCTCTTACCCCAATCATGAGGCA
1 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCA
* *
22328778 GATTAAAACAATCC
66 GATTGAAGCAATCC
* * *
22328792 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACTATTCAATCTCTTACCCTGACCATGAGGCA
1 AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCA
* *
22328857 GATTAAAACAATCC
66 GATTGAAGCAATCC
22328871 AATCTTTTACCCT
1 AATCTTTTACCCT
22328884 TAAAACTATA
Statistics
Matches: 895, Mismatches: 121, Indels: 46
0.84 0.11 0.04
Matches are distributed among these distances:
76 2 0.00
77 29 0.03
78 210 0.23
79 459 0.51
80 183 0.20
81 12 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (79 bp):
AATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCA
GATTGAAGCAATCC
Found at i:22332500 original size:31 final size:31
Alignment explanation
Indices: 22332464--22332590 Score: 95
Period size: 31 Copynumber: 4.2 Consensus size: 31
22332454 GATTACGTAT
22332464 CAAATTAAGAAAAAGAGTCAAGTTTAGGTAC
1 CAAATTAAGAAAAAGAGTCAAGTTTAGGTAC
* ** **
22332495 CAAATT-GGATCCCAA-A---AAGTTTAAATAC
1 CAAATTAAGA--AAAAGAGTCAAGTTTAGGTAC
* * *
22332523 CAACTTAAAAAAAAGTGTCAAGTTTAGGTAC
1 CAAATTAAGAAAAAGAGTCAAGTTTAGGTAC
* *
22332554 CAAATCAAGAAAAAGTGTCAAGTTT-GAGTAC
1 CAAATTAAGAAAAAGAGTCAAGTTTAG-GTAC
22332585 CAAATT
1 CAAATT
22332591 GGACAAAAAA
Statistics
Matches: 71, Mismatches: 17, Indels: 16
0.68 0.16 0.15
Matches are distributed among these distances:
27 2 0.03
28 15 0.21
29 1 0.01
30 3 0.04
31 48 0.68
32 2 0.03
ACGTcount: A:0.46, C:0.13, G:0.16, T:0.24
Consensus pattern (31 bp):
CAAATTAAGAAAAAGAGTCAAGTTTAGGTAC
Found at i:22332574 original size:90 final size:89
Alignment explanation
Indices: 22332464--22332632 Score: 225
Period size: 90 Copynumber: 1.9 Consensus size: 89
22332454 GATTACGTAT
* ** * *
22332464 CAAATTAAGAAAAAGAGTCAAGTTT-AGGTACCAAATTGGATCCCAAAAAGTTTAAATACCAACT
1 CAAATCAAGAAAAAGAGTCAAGTTTGA-GTACCAAATTGGA-CAAAAAAAATTTAAATACCAAAT
22332528 TA-AAAAAAAGTGTCAAGTTTAGGTAC
64 TAGAAAAAAA-TGTCAAGTTTAGGTAC
* **
22332554 CAAATCAAGAAAAAGTGTCAAGTTTGAGTACCAAATTGGACAAAAAAAATTTAGGTACCAAATTA
1 CAAATCAAGAAAAAGAGTCAAGTTTGAGTACCAAATTGGACAAAAAAAATTTAAATACCAAATTA
22332619 GAAAAAAATGTCAA
66 GAAAAAAATGTCAA
22332633 ATTCAAGTAC
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
89 25 0.36
90 43 0.62
91 1 0.01
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.23
Consensus pattern (89 bp):
CAAATCAAGAAAAAGAGTCAAGTTTGAGTACCAAATTGGACAAAAAAAATTTAAATACCAAATTA
GAAAAAAATGTCAAGTTTAGGTAC
Found at i:22345186 original size:31 final size:30
Alignment explanation
Indices: 22345144--22345304 Score: 122
Period size: 31 Copynumber: 5.4 Consensus size: 30
22345134 AAAAAAAAGC
* *
22345144 TTAGGTGCCAAATTAGAGAAAACTATCAAGT
1 TTAGGTACCAAATTAG-GAAAAATATCAAGT
*
22345175 TTAGGTACCAAATTGGGTCAAAAA-A--AA-T
1 TTAGGTACCAAATTAGG--AAAAATATCAAGT
22345203 TTAGGTACCAAATTAGGAAAAAATATCAAGT
1 TTAGGTACCAAATTAGG-AAAAATATCAAGT
* *
22345234 TTAGGTACCAAATTGGGTCAAAA-A--AA-T
1 TTAGGTACCAAATTAGG-AAAAATATCAAGT
** * *
22345261 TTAGGTACCAAATTAAAAAAAAGTGTTAAGT
1 TTAGGTACCAAATTAGGAAAAA-TATCAAGT
*
22345292 TTAGATACCAAAT
1 TTAGGTACCAAAT
22345305 GTTATATTAA
Statistics
Matches: 105, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
26 4 0.04
27 20 0.19
28 20 0.19
29 2 0.02
30 6 0.06
31 49 0.47
32 4 0.04
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.27
Consensus pattern (30 bp):
TTAGGTACCAAATTAGGAAAAATATCAAGT
Found at i:22345265 original size:58 final size:58
Alignment explanation
Indices: 22345113--22345304 Score: 242
Period size: 59 Copynumber: 3.2 Consensus size: 58
22345103 ATTTAATAAA
*** * * *
22345113 TTTAGGTACCAAATTGAAACTAAAAAAAAGCTTAGGTGCCAAATTAGAGAAAACTATCAAG
1 TTTAGGTACCAAATTGGGTC-AAAAAAAA-TTTAGGTACCAAATTAGA-AAAAATATCAAG
22345174 TTTAGGTACCAAATTGGGTCAAAAAAAATTTAGGTACCAAATTAGGAAAAAATATCAAG
1 TTTAGGTACCAAATTGGGTCAAAAAAAATTTAGGTACCAAATTA-GAAAAAATATCAAG
* * *
22345233 TTTAGGTACCAAATTGGGTC-AAAAAAATTTAGGTACCAAATTAAAAAAAAGTGTTAAG
1 TTTAGGTACCAAATTGGGTCAAAAAAAATTTAGGTACCAAATTAGAAAAAA-TATCAAG
*
22345291 TTTAGATACCAAAT
1 TTTAGGTACCAAAT
22345305 GTTATATTAA
Statistics
Matches: 119, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
57 6 0.05
58 41 0.34
59 45 0.38
60 10 0.08
61 17 0.14
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (58 bp):
TTTAGGTACCAAATTGGGTCAAAAAAAATTTAGGTACCAAATTAGAAAAAATATCAAG
Found at i:22346096 original size:16 final size:16
Alignment explanation
Indices: 22346075--22346105 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
22346065 GACATAATAA
22346075 TGTAACAATATTTATG
1 TGTAACAATATTTATG
22346091 TGTAACAATATTTAT
1 TGTAACAATATTTAT
22346106 TAAATGTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (16 bp):
TGTAACAATATTTATG
Found at i:22346972 original size:15 final size:15
Alignment explanation
Indices: 22346954--22346983 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
22346944 AACGTAAGTG
22346954 ACTAAAATGTAACAT
1 ACTAAAATGTAACAT
22346969 ACTAAAATGTAACAT
1 ACTAAAATGTAACAT
22346984 TTCAAACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.07, T:0.27
Consensus pattern (15 bp):
ACTAAAATGTAACAT
Found at i:22347933 original size:18 final size:19
Alignment explanation
Indices: 22347910--22347945 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
22347900 TATGAAATTA
*
22347910 TAATTATAAT-TTATAAAG
1 TAATTAAAATATTATAAAG
22347928 TAATTAAAATATTATAAA
1 TAATTAAAATATTATAAA
22347946 AAATTACCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
TAATTAAAATATTATAAAG
Found at i:22351993 original size:204 final size:203
Alignment explanation
Indices: 22351643--22352255 Score: 962
Period size: 204 Copynumber: 3.0 Consensus size: 203
22351633 TCGAGTTAGT
* * * *
22351643 TTGTAACAGCCCAATTTTTAGTGGTGTTAGAAATAGTGGTTTCGGGATCACAACTCCAACGAGTC
1 TTGTAACAGTCCAATTTTTAGTGGTGTCAGAAACAGTGGTTTCGGGACCACAACTCCAACGAGTC
*
22351708 GAGTCATAAATATTATTTATTTAATATTTGTAGCGTCATGAGTATCGTATTAAATTTTAGTTAAG
66 GAGTCATAAATATTATTTATTTAATATTTGTGGCGTCATGAGTATCGTATTAAATTTTAGTTAAG
*
22351773 AAATTTTATCGTTTAGATCATTAATTGAGTAAAAAGGACTAAACTACAAAAGGTGAGAAGCAAAA
131 AAATTTTATCGTTTAGATCATTAATTGAGTAAAAAGGACTAAACT-CAAAAGGTGAGAAGCGAAA
22351838 TGCTATTGG
195 TGCTATTGG
* * *
22351847 TTGTAACAGTCCAATTTTTAATGGTGTCAGAAACAGTGGTTTTGGGACCACAACTCCAACAAGTC
1 TTGTAACAGTCCAATTTTTAGTGGTGTCAGAAACAGTGGTTTCGGGACCACAACTCCAACGAGTC
22351912 GAGTCATAAATATTATTTATTTAATATTTGTGGCGTCATGAGTATCGTATTAAATTTTAGTTAAG
66 GAGTCATAAATATTATTTATTTAATATTTGTGGCGTCATGAGTATCGTATTAAATTTTAGTTAAG
* *
22351977 AAATTTTATCGTTTAGATCATTAATTAAGTAAAAAGGACTAAACCGCAAAAGGTGAGAAGCGAAA
131 AAATTTTATCGTTTAGATCATTAATTGAGTAAAAAGGACTAAA-CTCAAAAGGTGAGAAGCGAAA
22352042 TGCTATTGG
195 TGCTATTGG
* * * * *
22352051 TTGTAGCAGTCCAGTTTTTAGTGGTGTCAGAAACAGTAGTTTCGGGACCACAAATCTAACGAGTC
1 TTGTAACAGTCCAATTTTTAGTGGTGTCAGAAACAGTGGTTTCGGGACCACAACTCCAACGAGTC
* *
22352116 GAGTCATAAATATTATTTATTTAATATTTGTGGCATCATGAGTATCGTA--AAATTTTTGTTAAG
66 GAGTCATAAATATTATTTATTTAATATTTGTGGCGTCATGAGTATCGTATTAAATTTTAGTTAAG
* * * *
22352179 AAATTTTATCGTTTAGATAATTAATTGAGCAAAAAGGACTAAA-TCGTAAAAGCTGAGAAAGTGA
131 AAATTTTATCGTTTAGATCATTAATTGAGTAAAAAGGACTAAACTC--AAAAGGTGAG-AAGCGA
22352243 AATGCTATTGG
193 AATGCTATTGG
22352254 TT
1 TT
22352256 AAAAGCATTA
Statistics
Matches: 378, Mismatches: 27, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
200 1 0.00
202 62 0.16
203 18 0.05
204 296 0.78
205 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.34
Consensus pattern (203 bp):
TTGTAACAGTCCAATTTTTAGTGGTGTCAGAAACAGTGGTTTCGGGACCACAACTCCAACGAGTC
GAGTCATAAATATTATTTATTTAATATTTGTGGCGTCATGAGTATCGTATTAAATTTTAGTTAAG
AAATTTTATCGTTTAGATCATTAATTGAGTAAAAAGGACTAAACTCAAAAGGTGAGAAGCGAAAT
GCTATTGG
Found at i:22352757 original size:38 final size:38
Alignment explanation
Indices: 22352705--22352782 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 38
22352695 AGAAGGAATT
* * * *
22352705 AGCAACACTGGCTCATAAGAGCAATACTTGCTTGTAAG
1 AGCAACACTAGCTCATAAAAGCAATACTAGCTCGTAAG
* *
22352743 AGCAATACTAGCTCATAAAAGCGATACTAGCTCGTAAG
1 AGCAACACTAGCTCATAAAAGCAATACTAGCTCGTAAG
22352781 AG
1 AG
22352783 GGGTCGTAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (38 bp):
AGCAACACTAGCTCATAAAAGCAATACTAGCTCGTAAG
Found at i:22352769 original size:19 final size:19
Alignment explanation
Indices: 22352705--22352782 Score: 84
Period size: 19 Copynumber: 4.1 Consensus size: 19
22352695 AGAAGGAATT
* *
22352705 AGCAACACTGGCTCATAAG
1 AGCAATACTAGCTCATAAG
* **
22352724 AGCAATACTTGCTTGTAAG
1 AGCAATACTAGCTCATAAG
*
22352743 AGCAATACTAGCTCATAAA
1 AGCAATACTAGCTCATAAG
* *
22352762 AGCGATACTAGCTCGTAAG
1 AGCAATACTAGCTCATAAG
22352781 AG
1 AG
22352783 GGGTCGTAAG
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (19 bp):
AGCAATACTAGCTCATAAG
Found at i:22352812 original size:19 final size:19
Alignment explanation
Indices: 22352788--22352824 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
22352778 AAGAGGGGTC
22352788 GTAAGAGCGATACTGGCTT
1 GTAAGAGCGATACTGGCTT
22352807 GTAAGAGCGATACTGGCT
1 GTAAGAGCGATACTGGCT
22352825 CATAGAAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.24
Consensus pattern (19 bp):
GTAAGAGCGATACTGGCTT
Found at i:22353299 original size:11 final size:11
Alignment explanation
Indices: 22353268--22353306 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
22353258 ACCCAATTCC
*
22353268 AAAATCAAAAT
1 AAAATAAAAAT
*
22353279 AAACAAAAAAAT
1 AAA-ATAAAAAT
22353291 AAAATAAAAAT
1 AAAATAAAAAT
22353302 AAAAT
1 AAAAT
22353307 TCTATTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:22354696 original size:10 final size:10
Alignment explanation
Indices: 22354683--22354720 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
22354673 TTTAATATGT
22354683 TTTTTTAAAA
1 TTTTTTAAAA
22354693 -TTTTTAAAA
1 TTTTTTAAAA
* *
22354702 TCTTTTAATA
1 TTTTTTAAAA
22354712 TTTTTTAAA
1 TTTTTTAAA
22354721 GTTGATCACT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
9 9 0.39
10 14 0.61
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:22354808 original size:26 final size:26
Alignment explanation
Indices: 22354779--22354835 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
22354769 TTTATATGTA
*
22354779 TATATACTTATTT-ATCTTAGTATTAT
1 TATATACTTATTTGATCTT-CTATTAT
* * *
22354805 TATATTCTTTTTTGATGTTCTATTAT
1 TATATACTTATTTGATCTTCTATTAT
22354831 TATAT
1 TATAT
22354836 TTTAATGCGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.61
Consensus pattern (26 bp):
TATATACTTATTTGATCTTCTATTAT
Found at i:22366565 original size:93 final size:93
Alignment explanation
Indices: 22366406--22366873 Score: 547
Period size: 93 Copynumber: 5.1 Consensus size: 93
22366396 AGTAAACACT
* * * * * * * * *
22366406 AAATCCTATAACCTTGAGTTGTAGTGAGT-CGAATTAAAACAATGAAGCAGATCTCAATGTCACT
1 AAATCCTATACCCCTAAGTTGAAGTGGGTCCG-ATTAAAATAATGAGGCAGATCTCAACGTCCCT
22366470 GAGGTTACAGTGGAGTGGAGTGAAGCACC
65 GAGGTTACAGTGGAGTGGAGTGAAGCACC
* * * *
22366499 AAATCTTATACCCCTAAGTTGAAGTGGGTCCGATTAAAATAATGAGGCAAATCTCAATGTCTCTG
1 AAATCCTATACCCCTAAGTTGAAGTGGGTCCGATTAAAATAATGAGGCAGATCTCAACGTCCCTG
22366564 AGGTTACAGTGGAGTGGAGTGAAGCACC
66 AGGTTACAGTGGAGTGGAGTGAAGCACC
* * * *
22366592 AAATCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAATAATGAGGCAGATCTCAACGTCCCTG
1 AAATCCTATACCCCTAAGTTGAAGTGGGTCCGATTAAAATAATGAGGCAGATCTCAACGTCCCTG
* * *
22366657 AGGTTACAATGGAGTGAAGTGAATCACC
66 AGGTTACAGTGGAGTGGAGTGAAGCACC
* * *
22366685 ---T--TATACCCCTAAGTTGCAGTAGGTCGGATTAAAATAATGAGGCAGATCTCAACGTCCCTG
1 AAATCCTATACCCCTAAGTTGAAGTGGGTCCGATTAAAATAATGAGGCAGATCTCAACGTCCCTG
* * *
22366745 AGGTTACAGTGGATTGAAGTGAAACACC
66 AGGTTACAGTGGAGTGGAGTGAAGCACC
* * * *
22366773 AAATCCTATACCCCTGAGTT-ACAGTGGG-ACGATTAAAACAATGAGGCAGACCTCAACGTCCCT
1 AAATCCTATACCCCTAAGTTGA-AGTGGGTCCGATTAAAATAATGAGGCAGATCTCAACGTCCCT
* * * *
22366836 AAGGTTATAGTGGAGTGGAGTGAAACATC
65 GAGGTTACAGTGGAGTGGAGTGAAGCACC
*
22366865 AGATCCTAT
1 AAATCCTAT
22366874 GTCCCTGAAT
Statistics
Matches: 327, Mismatches: 41, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
88 80 0.24
90 1 0.00
91 1 0.00
92 63 0.19
93 180 0.55
94 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (93 bp):
AAATCCTATACCCCTAAGTTGAAGTGGGTCCGATTAAAATAATGAGGCAGATCTCAACGTCCCTG
AGGTTACAGTGGAGTGGAGTGAAGCACC
Found at i:22366750 original size:181 final size:183
Alignment explanation
Indices: 22366395--22366859 Score: 632
Period size: 181 Copynumber: 2.5 Consensus size: 183
22366385 GTAATTATCC
* * * * *
22366395 AAGT-AAACACTAAATCCTATAACCTTGAGTTGTAGTGAGTCGAATTAAAACAATGAAGCAGATC
1 AAGTGAAACACCAAATCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAGGCAGATC
* *
22366459 TCAATGTCACTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAATCTTATACCCCTAAGTTGAAGT
66 TCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACC--A-CTTATACCCCTAAGTTGAAGT
* * *
22366524 GGGTCCGATTAAAATAATGAGGCAAATCTCAATGTCTCTGAGGTTACAGTGGAGTG
128 AGGTCCGATTAAAATAATGAGGCAAATCTCAACGTCCCTGAGGTTACAGTGGAGTG
* * *
22366580 GAGTGAAGCACCAAATCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAATAATGAGGCAGATC
1 AAGTGAAACACCAAATCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAGGCAGATC
* * * *
22366645 TCAACGTCCCTGAGGTTACAATGGAGTGAAGTGAATCA-C-CTTATACCCCTAAGTTGCAGTAGG
66 TCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCACTTATACCCCTAAGTTGAAGTAGG
* * *
22366708 TCGGATTAAAATAATGAGGCAGATCTCAACGTCCCTGAGGTTACAGTGGATTG
131 TCCGATTAAAATAATGAGGCAAATCTCAACGTCCCTGAGGTTACAGTGGAGTG
* ** * *
22366761 AAGTGAAACACCAAATCCTATACCCCTGAGTTACAGTGGGAC-GATTAAAACAATGAGGCAGACC
1 AAGTGAAACACCAAATCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAGGCAGATC
* *
22366825 TCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAA
66 TCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAA
22366860 ACATCAGATC
Statistics
Matches: 247, Mismatches: 32, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
180 51 0.21
181 106 0.43
185 4 0.02
186 86 0.35
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (183 bp):
AAGTGAAACACCAAATCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAGGCAGATC
TCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCACTTATACCCCTAAGTTGAAGTAGG
TCCGATTAAAATAATGAGGCAAATCTCAACGTCCCTGAGGTTACAGTGGAGTG
Found at i:22367961 original size:60 final size:57
Alignment explanation
Indices: 22367884--22368183 Score: 227
Period size: 57 Copynumber: 5.2 Consensus size: 57
22367874 AAAAATTGAA
* * *
22367884 GTGTTGGCCATGC-AATGGTCGACATCCCTTTTTTGTCAAAAAAAAATTCAAATTTTTTTG
1 GTGTTGGCCAT-CAAATGGCCGACA-CCC-CTTTTCTCAAAAAAAAATTCAAA-TTTTTTG
* * * * *
22367944 GTGTTGGCTATCAAATGGCCGACACACCGTTTTCTCGAAAAAAAATT-ACATTTTTGG
1 GTGTTGGCCATCAAATGGCCGACAC-CCCTTTTCTCAAAAAAAAATTCAAATTTTTTG
* *** * *
22368001 GTGTTAGCCATTGCATGGCCGACACCCCCTTTTCTCGAGAAAAAAATTCAAACTTTTT-
1 GTGTTGGCCATCAAATGGCCGACA-CCCCTTTTCTC-AAAAAAAAATTCAAATTTTTTG
* * * *
22368059 GTGTTGGCCATCAAATGGTCGACACCCCCTATT-T--AAAAAAAATT-ACATTTTTGG
1 GTGTTGGCCATCAAATGGCCGACA-CCCCTTTTCTCAAAAAAAAATTCAAATTTTTTG
** *** * *
22368113 GTGTTGGTTATTGCATGGCCGACACCCCCTTTTCTCGAGAAAAAATTCAAAATTTTTTG
1 GTGTTGGCCATCAAATGGCCGACA-CCCCTTTTCTCAAAAAAAAATTC-AAATTTTTTG
*
22368172 GTGTTAGCCATC
1 GTGTTGGCCATC
22368184 CCCTTTTCTC
Statistics
Matches: 187, Mismatches: 42, Indels: 23
0.74 0.17 0.09
Matches are distributed among these distances:
53 6 0.03
54 35 0.19
55 1 0.01
57 44 0.24
58 39 0.21
59 40 0.21
60 22 0.12
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (57 bp):
GTGTTGGCCATCAAATGGCCGACACCCCTTTTCTCAAAAAAAAATTCAAATTTTTTG
Done.