Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 78 of 135
Found at i:26119971 original size:23 final size:25
Alignment explanation
Indices: 26119945--26119990 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26119935 CCAATTAGAG
26119945 AATTAT-TGTTTAG-ATTTAATTCA
1 AATTATCTGTTTAGAATTTAATTCA
*
26119968 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
26119991 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCA
Found at i:26121819 original size:21 final size:21
Alignment explanation
Indices: 26121781--26121837 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
26121771 AAATTATAAA
*
26121781 GGAATACAAAAAATAATATGAG
1 GGAATACCAAAAA-AATATGAG
* *
26121803 AGG-ATGCCAAAAAAATATTAG
1 -GGAATACCAAAAAAATATGAG
26121824 GGAATACCAAAAAA
1 GGAATACCAAAAAA
26121838 TCTTTGAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.07
21 17 0.59
22 8 0.28
23 2 0.07
ACGTcount: A:0.58, C:0.09, G:0.18, T:0.16
Consensus pattern (21 bp):
GGAATACCAAAAAAATATGAG
Found at i:26122214 original size:56 final size:59
Alignment explanation
Indices: 26122128--26122266 Score: 180
Period size: 61 Copynumber: 2.4 Consensus size: 59
26122118 CTTGAAAAAA
26122128 AAAAATTATGAGGGAATACCAACAAATCTAA-G-TACC-AAAAAATATG-AGAATGTATC
1 AAAAATTATGAGGGAATACCAACAAATCTAAGGATACCAAAAAAATATGAAG-ATGTATC
*
26122184 AAAAATTATGAGGGAATACTAGA-AAATCTAAGGAAATACCAAAAAAATATGAAGATGTATC
1 AAAAATTATGAGGGAATACCA-ACAAATCTAAGG--ATACCAAAAAAATATGAAGATGTATC
* *
26122245 AAATATTATGAAGGAATACCAA
1 AAAAATTATGAGGGAATACCAA
26122267 TTTTTTATTT
Statistics
Matches: 72, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
56 28 0.39
57 2 0.03
60 5 0.07
61 35 0.49
62 2 0.03
ACGTcount: A:0.53, C:0.10, G:0.15, T:0.22
Consensus pattern (59 bp):
AAAAATTATGAGGGAATACCAACAAATCTAAGGATACCAAAAAAATATGAAGATGTATC
Found at i:26122306 original size:19 final size:19
Alignment explanation
Indices: 26122284--26122323 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
26122274 TTTGTCTTAG
*
26122284 AATTTTTTTCCATTTTTTT
1 AATTTTTTTACATTTTTTT
26122303 AATTTTTTTACATTTTTTT
1 AATTTTTTTACATTTTTTT
26122322 AA
1 AA
26122324 AAATATCATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (19 bp):
AATTTTTTTACATTTTTTT
Found at i:26122322 original size:10 final size:10
Alignment explanation
Indices: 26122285--26122322 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
26122275 TTGTCTTAGA
*
26122285 ATTTTTTTCC
1 ATTTTTTTAC
26122295 ATTTTTTTA-
1 ATTTTTTTAC
26122304 ATTTTTTTAC
1 ATTTTTTTAC
26122314 ATTTTTTTA
1 ATTTTTTTA
26122323 AAAATATCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (10 bp):
ATTTTTTTAC
Found at i:26123575 original size:29 final size:29
Alignment explanation
Indices: 26123543--26123627 Score: 80
Period size: 31 Copynumber: 2.8 Consensus size: 29
26123533 TTTAATGTGT
26123543 AATTGTATACATGAACTTTAATTTGGTAC
1 AATTGTATACATGAACTTTAATTTGGTAC
* * * *
26123572 AATTATACACATGAAACTTTAGTTATGGTTC
1 AATTGTATACATG-AACTTTAATT-TGGTAC
* * *
26123603 AAATGTATACTTGAAATATTAATTT
1 AATTGTATACATGAACT-TTAATTT
26123628 TGATTTAATC
Statistics
Matches: 43, Mismatches: 10, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
29 11 0.26
30 13 0.30
31 19 0.44
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (29 bp):
AATTGTATACATGAACTTTAATTTGGTAC
Found at i:26123817 original size:29 final size:29
Alignment explanation
Indices: 26123769--26123849 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 29
26123759 AGAATTTGAT
* *
26123769 AAAATCAAAATTTCATGTATAAAATTGTAC
1 AAAATC-AAAGTTCATGTATAAAATTATAC
26123799 AAAATCAAAGTTCATGTATAAAATTATAC
1 AAAATCAAAGTTCATGTATAAAATTATAC
* *
26123828 ATTAAACCATAGTTCATGTATA
1 A--AAATCAAAGTTCATGTATA
26123850 GTTTTGAGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
29 22 0.49
30 6 0.13
31 17 0.38
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.33
Consensus pattern (29 bp):
AAAATCAAAGTTCATGTATAAAATTATAC
Found at i:26128449 original size:47 final size:48
Alignment explanation
Indices: 26128343--26128474 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 48
26128333 TAAATCACCA
* * * *
26128343 TTTGTGGACATGCCACCACTGATTTGTAAATAAACTGCCACTGATAACAC
1 TTTGTGGACAAGCCACCACT--TATGCAGATAAACTGCCACTGATAACAC
* * *
26128393 TTTGTGGACAAGTCTCCACTTATGCTGATAAACTGCCACTGA-AACAC
1 TTTGTGGACAAGCCACCACTTATGCAGATAAACTGCCACTGATAACAC
* *
26128440 TTTGTGGACAAGCCACCCCTTTTGCAGATAAACTG
1 TTTGTGGACAAGCCACCACTTATGCAGATAAACTG
26128475 TCACATAATT
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
47 35 0.50
48 18 0.26
50 17 0.24
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (48 bp):
TTTGTGGACAAGCCACCACTTATGCAGATAAACTGCCACTGATAACAC
Found at i:26138418 original size:28 final size:29
Alignment explanation
Indices: 26138405--26138527 Score: 83
Period size: 28 Copynumber: 4.2 Consensus size: 29
26138395 ATGCTCGGGA
26138405 GAAAAATGGTAATTTTGGACACTTCGAGG
1 GAAAAATGGTAATTTTGGACACTTCGAGG
* * * *
26138434 TAAAAATGGTAATTTTTGGAAAGTT-TAGG
1 GAAAAATGGTAA-TTTTGGACACTTCGAGG
* * * *
26138463 GTTAAAAAT-GCAATTTTTGGA-AGTTTGGGG
1 G--AAAAATGGTAA-TTTTGGACACTTCGAGG
* * *
26138493 GTAAAATGGTAATTTTAGA-AGTTCGAGG
1 GAAAAATGGTAATTTTGGACACTTCGAGG
26138521 GAAAAAT
1 GAAAAAT
26138528 ATGATTTTTG
Statistics
Matches: 75, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
28 24 0.32
29 21 0.28
30 24 0.32
31 6 0.08
ACGTcount: A:0.37, C:0.04, G:0.27, T:0.33
Consensus pattern (29 bp):
GAAAAATGGTAATTTTGGACACTTCGAGG
Found at i:26138475 original size:87 final size:85
Alignment explanation
Indices: 26138379--26138745 Score: 300
Period size: 87 Copynumber: 4.2 Consensus size: 85
26138369 AACGGAGTCA
* * * *
26138379 AAAAATGCAA-TTTTGGATGCTCGGGAGAAAAATGGTAATTTTGGACACTTCGAGGTAAAAATGG
1 AAAAATGCAATTTTTGGAAGTTCGGG-GAAAAATGGTAATTTTGGA-ACTTCGAGGGAAAAAT-A
26138443 TAATTTTTGGAAAGTTTAGGGTT
63 TAATTTTTGGAAAGTTTAGGGTT
* * * * *
26138466 AAAAATGCAATTTTTGGAAGTTTGGGGGTAAAATGGTAATTTTAGAAGTTCGAGGGAAAAATATG
1 AAAAATGCAATTTTTGGAAG-TTCGGGGAAAAATGGTAATTTTGGAACTTCGAGGGAAAAATATA
* *
26138531 ATTTTTGAAAAGTTT-GAGGTC
65 ATTTTTGGAAAGTTTAG-GGTT
* * * * *
26138552 AAAAATG-ATATTTTTGAAAGTTCAAGGGTAAAATGGTCATTTTTGGAAGC-TCGGGGGAAAAAT
1 AAAAATGCA-ATTTTTGGAAGTTC-GGGGAAAAATGGT-AATTTTGGAA-CTTCGAGGGAAAAAT
* * *
26138615 ATGATTTTTGGAAAGTTCAGGGCT
62 ATAATTTTTGGAAAGTTTAGGGTT
* * * * *
26138639 AAAAATGAAATTTTTGGATGTTCGAGGGTCAAAATAT-G-ATTTTTGGAAAGTTCGAGGGGTAAA
1 AAAAATGCAATTTTTGGAAGTTCG-GGG--AAAA-ATGGTAATTTTGG-AACTTCGA-GGGAAAA
*
26138702 ATGTAATTTTT-GAAAGTTTGAGGGTT
60 ATATAATTTTTGGAAAGTTT-AGGGTT
*
26138728 -AAAATGTAATTTTTGGAA
1 AAAAATGCAATTTTTGGAA
26138746 AGTTTAGGGG
Statistics
Matches: 228, Mismatches: 35, Indels: 33
0.77 0.12 0.11
Matches are distributed among these distances:
85 4 0.02
86 47 0.21
87 92 0.40
88 55 0.24
89 28 0.12
90 2 0.01
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (85 bp):
AAAAATGCAATTTTTGGAAGTTCGGGGAAAAATGGTAATTTTGGAACTTCGAGGGAAAAATATAA
TTTTTGGAAAGTTTAGGGTT
Found at i:26138754 original size:29 final size:29
Alignment explanation
Indices: 26138436--26138762 Score: 190
Period size: 29 Copynumber: 11.2 Consensus size: 29
26138426 CTTCGAGGTA
26138436 AAAATGGTAATTTTTGGAAAGTTTAGGGTT
1 AAAAT-GTAATTTTTGGAAAGTTTAGGGTT
* * *
26138466 AAAAATGCAATTTTTGG-AAGTTTGGGGGT
1 -AAAATGTAATTTTTGGAAAGTTTAGGGTT
* * *
26138495 AAAATGGTAA-TTTTAG-AAGTTCGAGGG-A
1 AAAAT-GTAATTTTTGGAAAGTT-TAGGGTT
* * * *
26138523 AAAATATGATTTTTGAAAAGTTT-GAGGTCA
1 AAAATGTAATTTTTGGAAAGTTTAG-GGT-T
*
26138553 AAAATG-ATATTTTT-GAAAGTTCAAGGG-T
1 AAAATGTA-ATTTTTGGAAAGTT-TAGGGTT
* * ** **
26138581 AAAATGGTCATTTTTGG-AAGCTCGGGGGA
1 AAAAT-GTAATTTTTGGAAAGTTTAGGGTT
* * * *
26138610 AAAATATGATTTTTGGAAAGTTCAGGGCTA
1 AAAATGTAATTTTTGGAAAGTTTAGGG-TT
* * * *
26138640 AAAATGAAATTTTTGG-ATGTTCGAGGGTC
1 AAAATGTAATTTTTGGAAAGTT-TAGGGTT
* * * *
26138669 AAAATATGATTTTTGGAAAGTTCGAGGGGT
1 AAAATGTAATTTTTGGAAAGTT-TAGGGTT
26138699 AAAATGTAATTTTT-GAAAGTTTGAGGGTT
1 AAAATGTAATTTTTGGAAAGTTT-AGGGTT
26138728 AAAATGTAATTTTTGGAAAGTTTAGGGGTT
1 AAAATGTAATTTTTGGAAAGTTTA-GGGTT
26138758 AAAAT
1 AAAAT
26138763 TTGATTACTA
Statistics
Matches: 231, Mismatches: 44, Indels: 43
0.73 0.14 0.14
Matches are distributed among these distances:
27 3 0.01
28 43 0.19
29 96 0.42
30 83 0.36
31 6 0.03
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAAGTTTAGGGTT
Found at i:26138761 original size:59 final size:58
Alignment explanation
Indices: 26138407--26138762 Score: 255
Period size: 59 Copynumber: 6.1 Consensus size: 58
26138397 GCTCGGGAGA
* * *
26138407 AAAATGGTAA-TTTTGGACACTTCGA-GGTAAAAATGGTAATTTTTGGAAAGTTTAGGGTT
1 AAAAT-GTAATTTTTGGA-AGTTTGAGGGTAAAAAT-GTAATTTTTGGAAAGTTTAGGGGT
* * * * *
26138466 AAAAATGCAATTTTTGGAAGTTTGGGGGT-AAAATGGTAA-TTTTAG-AAG-TTCGAGGGA
1 -AAAATGTAATTTTTGGAAGTTTGAGGGTAAAAAT-GTAATTTTTGGAAAGTTTAG-GGGT
* * * * *
26138523 AAAATATGATTTTTGAAAAGTTTGA-GGTCAAAAATG-ATATTTTT-GAAAGTTCAAGGGT
1 AAAATGTAATTTTTG-GAAGTTTGAGGGT-AAAAATGTA-ATTTTTGGAAAGTTTAGGGGT
* * * * * * * *
26138581 AAAATGGTCATTTTTGGAAGCTCG-GGGGAAAAATATGATTTTTGGAAAGTTCAGGGCT
1 AAAAT-GTAATTTTTGGAAGTTTGAGGGTAAAAATGTAATTTTTGGAAAGTTTAGGGGT
* * * * * * *
26138639 AAAAATGAAATTTTTGGATGTTCGAGGGTCAAAATATGATTTTTGGAAAGTTCGAGGGGT
1 -AAAATGTAATTTTTGGAAGTTTGAGGGTAAAAATGTAATTTTTGGAAAGTT-TAGGGGT
* *
26138699 AAAATGTAATTTTTGAAAGTTTGAGGGTTAAAATGTAATTTTTGGAAAGTTTAGGGGTT
1 AAAATGTAATTTTTGGAAGTTTGAGGGTAAAAATGTAATTTTTGGAAAGTTTAGGGG-T
26138758 AAAAT
1 AAAAT
26138763 TTGATTACTA
Statistics
Matches: 235, Mismatches: 43, Indels: 37
0.75 0.14 0.12
Matches are distributed among these distances:
56 19 0.08
57 27 0.11
58 63 0.27
59 106 0.45
60 20 0.09
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (58 bp):
AAAATGTAATTTTTGGAAGTTTGAGGGTAAAAATGTAATTTTTGGAAAGTTTAGGGGT
Found at i:26140673 original size:17 final size:17
Alignment explanation
Indices: 26140647--26140725 Score: 95
Period size: 17 Copynumber: 4.6 Consensus size: 17
26140637 TTAATTAATT
*
26140647 AATTTTAATTTAAAATA
1 AATTTAAATTTAAAATA
*
26140664 AATTTAAATTTAAAGTA
1 AATTTAAATTTAAAATA
* * * *
26140681 AATTTAAACTCAACATG
1 AATTTAAATTTAAAATA
26140698 AATTTAAATTTAAAATA
1 AATTTAAATTTAAAATA
*
26140715 AATTAAAATTT
1 AATTTAAATTT
26140726 GGAATCAATT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 50 1.00
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.41
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:26141460 original size:210 final size:209
Alignment explanation
Indices: 26141093--26142052 Score: 1293
Period size: 209 Copynumber: 4.6 Consensus size: 209
26141083 TAGAAAGAAG
* ** ** ** *
26141093 GATTTGGTTCACTTCTCTGCGTCTTGTCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCGACCTGCTTC-T
* * * *
26141158 CA-TATCTTAT-TGAGAAGCTGTGGTTCGAAGTTTCACTCTCATCGAGCTTTGGTTTCATTGATT
65 CAGTATCTCATCAG-GAAGCTG-GGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGATT
* * * * * **
26141221 TGGTCTGCTTCTCAGTATCTCATCAGGAAGACGACTGCATCACTTATTTTGATCTACTTCTCTAT
128 TGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCGCTTCTCTAT
*
26141286 ATCTCATCAGGAAGACA
193 ATCTCATCAAGAAGACA
* * * *
26141303 GATTTGGTCCATTTCTCTGTATCTCATCAGGAAGACGACCGCTTTATTGCTTCAACCTGCTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCGACCTGCTTCTC
* * *
26141368 AGTACCTCATCAGGAAGCTAGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCTTTCATTTG
66 AGTATCTCATCAGGAAGCT-GGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGATTTG
* * * * *
26141433 GTCTACTTCTCAGTATCTTACCAGGAAGATGACCGTATGACTTGTTTTAATCCGCTTCTCTGTAT
130 GTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCGCTTCTCTATAT
26141498 CTCATCAAGAAGAC-
195 CTCATCAAGAAGACA
* *
26141512 GAATTTGGTCTACTTCTCTGTATCTCATCAAGAAGACAACCACTTTATTGCTTCGACCTGCTTCT
1 G-ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCGACCTGCTTCT
* *
26141577 CATTATCTCATCAGAAAGCTGGGGTTCGAA-TTTCGCTCACATCGAGCTTTGGTTTCATTGATTT
65 CAGTATCTCATCAGGAAGCT-GGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGATTT
* * * *
26141641 GTTCTACTTTTCAGTATCTCATCAGGAAGATGACCACATCACTTGTTTTAATCCGCTTCTCTGTA
129 GGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCGCTTCTCTATA
* *
26141706 TCTCATCAGGAAGACG
194 TCTCATCAAGAAGACA
* *
26141722 GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGACAACCACTTTATTACTTCGACCTGCTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCGACCTGCTTCTC
* * *
26141787 AGTATCTCATCAGGAAGCTGGGATTCAAAGTTTTGCTCACATTGAGC-TTGGTTTCATTGATTTG
66 AGTATCTCATCAGGAAGCTGGG-TTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGATTTG
* *
26141851 GTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCATCACTTGTTTTAATCCGCTTCCCTATAT
130 GTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCGCTTCTCTATAT
*
26141916 CTCATCAAGAAGAGA
195 CTCATCAAGAAGACA
* * * *
26141931 GATTTGGTCCACTTCTTTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCAACTTGTTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCGACCTGCTTCTC
* * *
26141996 AGTATCTTATCAGGAAGCTGGGATTCGAAGTTTCGCTCACATTGAGC-TTAGTTTCAT
66 AGTATCTCATCAGGAAGCTGGG-TTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCAT
26142053 CACTTGCTTT
Statistics
Matches: 665, Mismatches: 78, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
208 3 0.00
209 390 0.59
210 270 0.41
211 2 0.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (209 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCGACCTGCTTCTC
AGTATCTCATCAGGAAGCTGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGATTTGG
TCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCGCTTCTCTATATC
TCATCAAGAAGACA
Found at i:26142032 original size:419 final size:418
Alignment explanation
Indices: 26141094--26142052 Score: 1327
Period size: 419 Copynumber: 2.3 Consensus size: 418
26141084 AGAAAGAAGG
* ** ** ** *
26141094 ATTTGGTTCACTTCTCTGCGTCTTGTCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTTC
1 ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCGACCTGCTTC-TC
* * *
26141159 ATATCTTAT-TGAGAAGCTGTGGTTCGAAGTTTCACTCTCATCGAGCTTTGGTTTCATTGATTTG
65 ATATCTTATCAG-GAAGCTG-GGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGATTTG
* ** * *
26141223 GTCTGCTTCTCAGTATCTCATCAGGAAGACGACTGCATCACTTATTTTGATCTACTTCTCTATAT
128 GTCTACTTCTCAGTATCTCATCAGGAAGACGACCACATCACTTATTTTAATCCACTTCTCTATAT
* * * * *
26141288 CTCATCAGGAAGACAGATTTGGTCCATTTCTCTGTATCTCATCAGGAAGACGACCGCTTTATTGC
193 CTCATCAGGAAGACAGATTTGGTCCACTTCTCTGTATCTCATCAGAAAGACAACCACTTTATTAC
*
26141353 TTCAACCTGCTTCTCAGTACCTCATCAGGAAGCTAGGGTTCGAAGTTTCGCTCACATCGAGCTTT
258 TTCAACCTGCTTCTCAGTACCTCATCAGGAAGCTAGGGTTCAAAGTTTCGCTCACATCGAGCTTT
* * * * *
26141418 GGTTTCTTTCATTTGGTCTACTTCTCAGTATCTTACCAGGAAGATGACCGTATGACTTGTTTTAA
323 GGTTTCATTCATTTGGTCTACTTCTCAGTATCTCACCAAGAAGATGACCGCATCACTTGTTTTAA
* *
26141483 TCCGCTTCTCTGTATCTCATCAAGAAGACGA
388 TCCGCTTCCCTATATCTCATCAAGAAGACGA
* *
26141514 ATTTGGTCTACTTCTCTGTATCTCATCAAGAAGACAACCACTTTATTGCTTCGACCTGCTTCTCA
1 ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCGACCTGCTTCTCA
* * *
26141579 TTATCTCATCAGAAAGCTGGGGTTCGAA-TTTCGCTCACATCGAGCTTTGGTTTCATTGATTTGT
66 -TATCTTATCAGGAAGCT-GGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGATTTGG
* * * * *
26141643 TCTACTTTTCAGTATCTCATCAGGAAGATGACCACATCACTTGTTTTAATCCGCTTCTCTGTATC
129 TCTACTTCTCAGTATCTCATCAGGAAGACGACCACATCACTTATTTTAATCCACTTCTCTATATC
*
26141708 TCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGAAAGACAACCACTTTATTACT
194 TCATCAGGAAGACAGATTTGGTCCACTTCTCTGTATCTCATCAGAAAGACAACCACTTTATTACT
* * * *
26141773 TCGACCTGCTTCTCAGTATCTCATCAGGAAGCT-GGGATTCAAAGTTTTGCTCACATTGAGC-TT
259 TCAACCTGCTTCTCAGTACCTCATCAGGAAGCTAGGG-TTCAAAGTTTCGCTCACATCGAGCTTT
* *
26141836 GGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCATCACTTGTTTTAA
323 GGTTTCATTCATTTGGTCTACTTCTCAGTATCTCACCAAGAAGATGACCGCATCACTTGTTTTAA
26141901 TCCGCTTCCCTATATCTCATCAAGAAGA-GA
388 TCCGCTTCCCTATATCTCATCAAGAAGACGA
* * * *
26141931 GATTTGGTCCACTTCTTTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCAACTTGTTTCTC
1 -ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCGACCTGCTTCTC
* *
26141996 AGTATCTTATCAGGAAGCTGGGATTCGAAGTTTCGCTCACATTGAGC-TTAGTTTCAT
65 A-TATCTTATCAGGAAGCTGGG-TTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCAT
26142053 CACTTGCTTT
Statistics
Matches: 475, Mismatches: 57, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
417 5 0.01
418 178 0.37
419 218 0.46
420 72 0.15
421 2 0.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (418 bp):
ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACCACTTTATTGCTTCGACCTGCTTCTCA
TATCTTATCAGGAAGCTGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGATTTGGTC
TACTTCTCAGTATCTCATCAGGAAGACGACCACATCACTTATTTTAATCCACTTCTCTATATCTC
ATCAGGAAGACAGATTTGGTCCACTTCTCTGTATCTCATCAGAAAGACAACCACTTTATTACTTC
AACCTGCTTCTCAGTACCTCATCAGGAAGCTAGGGTTCAAAGTTTCGCTCACATCGAGCTTTGGT
TTCATTCATTTGGTCTACTTCTCAGTATCTCACCAAGAAGATGACCGCATCACTTGTTTTAATCC
GCTTCCCTATATCTCATCAAGAAGACGA
Found at i:26143163 original size:17 final size:17
Alignment explanation
Indices: 26143137--26143225 Score: 70
Period size: 17 Copynumber: 4.9 Consensus size: 17
26143127 TTAATTAATT
*
26143137 AATTTTAATTTAAAATA
1 AATTTAAATTTAAAATA
*
26143154 AATTTAAATTTAAACTCAAA
1 AATTTAAATTTAAA---ATA
26143174 ATGGATTTAAATTTAAAATA
1 A---ATTTAAATTTAAAATA
* * *
26143194 AATTCAAACTTAAAATG
1 AATTTAAATTTAAAATA
*
26143211 AATTAAAATTTAAAA
1 AATTTAAATTTAAAA
26143226 ATTAAAATTT
Statistics
Matches: 58, Mismatches: 8, Indels: 12
0.74 0.10 0.15
Matches are distributed among these distances:
17 39 0.67
20 6 0.10
23 13 0.22
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.37
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:26143182 original size:34 final size:32
Alignment explanation
Indices: 26143144--26143219 Score: 80
Period size: 34 Copynumber: 2.3 Consensus size: 32
26143134 ATTAATTTTA
* *
26143144 ATTTAAAATAAATTTAAATTTAAACTCAAAATGG
1 ATTTAAAATAAA-ATAAATTCAAACTCAAAAT-G
* *
26143178 ATTTAAATTTAAAATAAATTCAAACTTAAAATG
1 ATTTAAA-ATAAAATAAATTCAAACTCAAAATG
*
26143211 AATTAAAAT
1 ATTTAAAAT
26143220 TTAAAAATTA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
32 1 0.03
33 7 0.20
34 23 0.66
35 4 0.11
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (32 bp):
ATTTAAAATAAAATAAATTCAAACTCAAAATG
Found at i:26143220 original size:34 final size:34
Alignment explanation
Indices: 26143158--26143225 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
26143148 AAAATAAATT
* * *
26143158 TAAATTTAAACTCAAAATGGATTTAAATTTAAAA
1 TAAATTCAAACTCAAAATGAATTAAAATTTAAAA
*
26143192 TAAATTCAAACTTAAAATGAATTAAAATTTAAAA
1 TAAATTCAAACTCAAAATGAATTAAAATTTAAAA
26143226 ATTAAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.56, C:0.06, G:0.04, T:0.34
Consensus pattern (34 bp):
TAAATTCAAACTCAAAATGAATTAAAATTTAAAA
Found at i:26145305 original size:51 final size:50
Alignment explanation
Indices: 26145215--26145407 Score: 228
Period size: 50 Copynumber: 3.8 Consensus size: 50
26145205 TTAATAAAGT
* *
26145215 CATGCATTATGTAACTTTCATATTAGTTAAGTATGCATCATAAATAATGA
1 CATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGA
* * * *
26145265 CATGCATTATGAAACTCTCATGACTAGTTAAGTTTGCATCATAAATAAAGA
1 CATGCATTATGTAACTCTCATG-TTAGTTAAGTATGCATCATAAATAATGA
* * * *
26145316 CATGCATTAAGTAACT-TACATGTTAGTTAAATATGTATCATAAATTAT-A
1 CATGCATTATGTAACTCT-CATGTTAGTTAAGTATGCATCATAAATAATGA
* *
26145365 TCATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCAT
1 -CATGCATTATGTAACTCTCATGTTAGTT-AAGTATGCATCAT
26145408 TAAAAAATAA
Statistics
Matches: 119, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
49 1 0.01
50 65 0.55
51 53 0.45
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (50 bp):
CATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGA
Found at i:26145382 original size:101 final size:101
Alignment explanation
Indices: 26145207--26145407 Score: 280
Period size: 101 Copynumber: 2.0 Consensus size: 101
26145197 TTTTGCATTT
* * * *
26145207 AATAAAGTCATGCATTATGTAACTTTCATATTAGTTAAGTATGCATCATAAATAATGACATGCAT
1 AATAAAGACATGCATTAAGTAACTTACATATTAGTTAAATATGCATCATAAATAATGACATGCAT
*
26145272 TATGAAACTCTCATGACTAGTT-AAGTTTGCATCATA
66 TATGAAACTCCCATG-CTAGTTAAAGTTTGCATCATA
* * *
26145308 AATAAAGACATGCATTAAGTAACTTACATGTTAGTTAAATATGTATCATAAATTAT-ATCATGCA
1 AATAAAGACATGCATTAAGTAACTTACATATTAGTTAAATATGCATCATAAATAATGA-CATGCA
* *
26145372 TTATGTAACTCCCATGTTAGTTAAAGTTTGCATCAT
65 TTATGAAACTCCCATGCTAGTTAAAGTTTGCATCAT
26145408 TAAAAAATAA
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
100 6 0.07
101 82 0.93
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.36
Consensus pattern (101 bp):
AATAAAGACATGCATTAAGTAACTTACATATTAGTTAAATATGCATCATAAATAATGACATGCAT
TATGAAACTCCCATGCTAGTTAAAGTTTGCATCATA
Found at i:26146006 original size:36 final size:35
Alignment explanation
Indices: 26145910--26146009 Score: 128
Period size: 36 Copynumber: 2.8 Consensus size: 35
26145900 TTAAGCTATC
* * *
26145910 CAAAGACTAATGAAAATACATGCCCTTTCATCTACT
1 CAAAGACAAATG-AAAGACATGCCTTTTCATCTACT
* *
26145946 AAAAGACAAATGAAGAGACATGCCTTTTCATCTCCT
1 CAAAGACAAATGAA-AGACATGCCTTTTCATCTACT
26145982 CAAAGACAAATGACAAGACATGCCTTTT
1 CAAAGACAAATGA-AAGACATGCCTTTT
26146010 GAGCTAACCC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
35 2 0.04
36 53 0.95
37 1 0.02
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.25
Consensus pattern (35 bp):
CAAAGACAAATGAAAGACATGCCTTTTCATCTACT
Found at i:26147404 original size:17 final size:17
Alignment explanation
Indices: 26147378--26147456 Score: 104
Period size: 17 Copynumber: 4.6 Consensus size: 17
26147368 TTAATTAATT
*
26147378 AATTTTAATTTAAAATA
1 AATTTAAATTTAAAATA
*
26147395 AATTTAAATTTAAAGTA
1 AATTTAAATTTAAAATA
* * *
26147412 AATTTAAACTCAAAATG
1 AATTTAAATTTAAAATA
26147429 AATTTAAATTTAAAATA
1 AATTTAAATTTAAAATA
*
26147446 AATTAAAATTT
1 AATTTAAATTT
26147457 GGACTCAAAT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 52 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:26148229 original size:209 final size:208
Alignment explanation
Indices: 26147825--26148513 Score: 966
Period size: 209 Copynumber: 3.3 Consensus size: 208
26147815 TTTTACTAGA
* * * * * *
26147825 AAGATGGATTTGGTTCACTTCTCTGTGTCTCGTCAGGAAGATGACCATTTTATTGCTTCGACCTG
1 AAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACGACCACTTTATTGCTTCGACCTG
* * * *
26147890 CTTCTCCGTATCTCATCGGGAAGCTGTGGTTCGAAGTTTTGCTCTCATCGAGCTTTGGTTTCATT
66 CTTCTCAGTATCTCATCAGGAAGCTG-GGTTCGAAGTTTTGCTCACATTGAGC-TTGGTTTCATT
* * *
26147955 GATTTGGTTTGCTTCTCAGTATCTCATCAGGAAGACGACCGCATCACTTATTTTGATCCGCTTCT
129 GATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTTGATCCGCTTCT
*
26148020 CTGTATCTCATTAGG
194 CTGTATCTCATCAGG
* * *
26148035 AAGACGGATTTGGTCTACTTCTCTGTATCTCATTAGGAAGACGACCGCTTTATTAG-TTCGACCT
1 AAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACGACCACTTTATT-GCTTCGACCT
* * * *
26148099 GCCTCTCAATACCTCAACAGGAAGCTGGCGTTCGAAGTTTTGCTCACATTGAGCTTGGTTTCATT
65 GCTTCTCAGTATCTCATCAGGAAGCTGG-GTTCGAAGTTTTGCTCACATTGAGCTTGGTTTCATT
* * * *
26148164 AATTTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCGCTTCT
129 GATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTTGATCCGCTTCT
*
26148229 CTGTATCTCAACAGG
194 CTGTATCTCATCAGG
* * *
26148244 AAGACGAATTTGGTCCACTTCTCTATATCTCATCAGGAAGACAACCACTTTATTGCTTCGACCTG
1 AAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACGACCACTTTATTGCTTCGACCTG
* * * * *
26148309 CTTCTCAGTATCTCATCAAGAAGCTAGGATTCGAAGGTTCGCTCACATTGAGCTTGGTTTAATTG
66 CTTCTCAGTATCTCATCAGGAAGCT-GGGTTCGAAGTTTTGCTCACATTGAGCTTGGTTTCATTG
26148374 ATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTTGATCCGCTTCTC
130 ATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTTGATCCGCTTCTC
*
26148439 TGTATCTTATCAGG
195 TGTATCTCATCAGG
* * * * *
26148453 AAGACGGATTTAGTCCACTTCTCTGTATCTCATGAGGAAGACGATCGCTATATTGCTTCGA
1 AAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACGACCACTTTATTGCTTCGA
26148514 AAGATCGTCA
Statistics
Matches: 420, Mismatches: 55, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
208 1 0.00
209 319 0.76
210 99 0.24
211 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (208 bp):
AAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACGACCACTTTATTGCTTCGACCTG
CTTCTCAGTATCTCATCAGGAAGCTGGGTTCGAAGTTTTGCTCACATTGAGCTTGGTTTCATTGA
TTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTTGATCCGCTTCTCT
GTATCTCATCAGG
Found at i:26148674 original size:41 final size:42
Alignment explanation
Indices: 26148616--26148710 Score: 140
Period size: 41 Copynumber: 2.3 Consensus size: 42
26148606 CCCCAAGCTC
* * * *
26148616 AGGGTAAAAGA-TCGGAATCTTCAATTTGCCCTTCTTGATTA
1 AGGGTAAAAGACTCGGAATCTTCAATCTACCCTTATTGACTA
26148657 AGGGTAAAAGACT-GGAATCTTCAATCTACCCTTATTGACTA
1 AGGGTAAAAGACTCGGAATCTTCAATCTACCCTTATTGACTA
26148698 AGGGTAAAAGACT
1 AGGGTAAAAGACT
26148711 AAATGATGAT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 48 0.98
42 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (42 bp):
AGGGTAAAAGACTCGGAATCTTCAATCTACCCTTATTGACTA
Found at i:26149014 original size:50 final size:50
Alignment explanation
Indices: 26148948--26149434 Score: 341
Period size: 50 Copynumber: 9.8 Consensus size: 50
26148938 CATCTTGTCT
* * * *
26148948 TTTTAAGGTACCAGGTTCGCCATTGCGGCCTCAACCTTTCCCGTCACATC
1 TTTTAAGGTACTAGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC
*** * * * * *
26148998 TTTTAAGGTACTAGGTTTGTCATTACGGCCTCAACCTTTCCCTTAAAATC
1 TTTTAAGGTACTAGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC
* * * * * * *
26149048 TTCTGAGGTACCAGATTCACCGTCGCGGCCTCAATCC-TTCCCTTCAAATC
1 TTTTAAGGTACTAGGTTCACCGTTGCGGCCTCAA-CCTTTCCCATCACATC
* * * * * *
26149098 -TTCATGGTAC-CGAGTTCGCCGTTACGGCCTCAACCTTTCCTATCACATC
1 TTTTAAGGTACTAG-GTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC
* * *
26149147 TTCTT-AGGTACTGGGTTCACCGTTGCGGCCTCAATCTTTCCCAT--CATA
1 TT-TTAAGGTACTAGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC
* * * * * * *
26149195 TTTCATGGTAC-CGAATTCGCCGTTGCGACCTCAATCTTTCCCATCACAT-
1 TTTTAAGGTACTAG-GTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC
* * * * * *
26149244 TTTTGAGGTA-TCAGGTTCACCGTAGCGGCATCAACCTTTCCCTTTAAATC
1 TTTTAAGGTACT-AGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC
* * * * *
26149294 -TTCATGGTACTGGGTTCACCGTTGCGACCTCAACCTTTCCCGTCACATC
1 TTTTAAGGTACTAGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC
** * *
26149343 TTCTT-AGGTACCGGGTTCACCGTTGTGGCCTCAACCTTTCCCATCACGTC
1 TT-TTAAGGTACTAGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC
* * * *
26149393 TTTTTAGGTA-TCGGGTTCACCGTTGCAGCCTCAACCCTTCCC
1 TTTTAAGGTACT-AGGTTCACCGTTGCGGCCTCAACCTTTCCC
26149435 TGTCAAACCT
Statistics
Matches: 341, Mismatches: 78, Indels: 36
0.75 0.17 0.08
Matches are distributed among these distances:
47 2 0.01
48 40 0.12
49 104 0.30
50 190 0.56
51 5 0.01
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.32
Consensus pattern (50 bp):
TTTTAAGGTACTAGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC
Found at i:26149241 original size:98 final size:99
Alignment explanation
Indices: 26148953--26149388 Score: 450
Period size: 99 Copynumber: 4.4 Consensus size: 99
26148943 TGTCTTTTTA
* * * * * * * *
26148953 AGGTACCAGGTTCGCCATTGCGGCCTCAACCTTTCCCGTCACATCTTTTAAGGTA-CTAGGTTTG
1 AGGTACCAGGTTCACCGTTGCGGCCTCAACCTTTCCCATCAAATC-TTCATGGTACCGA-GTTCG
* * * * * * * *
26149017 TCATTACGGCCTCAACCTTTCCCTTAAAATCTTCTG
64 CCGTTGCGACCTCAACCTTTCCCATCACATCTTCTT
* * *
26149053 AGGTACCAGATTCACCGTCGCGGCCTCAATCC-TTCCCTTCAAATCTTCATGGTACCGAGTTCGC
1 AGGTACCAGGTTCACCGTTGCGGCCTCAA-CCTTTCCCATCAAATCTTCATGGTACCGAGTTCGC
* * *
26149117 CGTTACGGCCTCAACCTTTCCTATCACATCTTCTT
65 CGTTGCGACCTCAACCTTTCCCATCACATCTTCTT
** * * *
26149152 AGGTACTGGGTTCACCGTTGCGGCCTCAATCTTTCCCATCATAT-TTCATGGTACCGAATTCGCC
1 AGGTACCAGGTTCACCGTTGCGGCCTCAACCTTTCCCATCAAATCTTCATGGTACCGAGTTCGCC
*
26149216 GTTGCGACCTCAATCTTTCCCATCACAT-TT-TT
66 GTTGCGACCTCAACCTTTCCCATCACATCTTCTT
* * * * * * * *
26149248 GAGGTATCAGGTTCACCGTAGCGGCATCAACCTTTCCCTTTAAATCTTCATGGTACTGGGTTCAC
1 -AGGTACCAGGTTCACCGTTGCGGCCTCAACCTTTCCCATCAAATCTTCATGGTACCGAGTTCGC
*
26149313 CGTTGCGACCTCAACCTTTCCCGTCACATCTTCTT
65 CGTTGCGACCTCAACCTTTCCCATCACATCTTCTT
* *
26149348 AGGTACCGGGTTCACCGTTGTGGCCTCAACCTTTCCCATCA
1 AGGTACCAGGTTCACCGTTGCGGCCTCAACCTTTCCCATCA
26149389 CGTCTTTTTA
Statistics
Matches: 278, Mismatches: 51, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
96 2 0.01
97 37 0.13
98 86 0.31
99 111 0.40
100 40 0.14
101 2 0.01
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.32
Consensus pattern (99 bp):
AGGTACCAGGTTCACCGTTGCGGCCTCAACCTTTCCCATCAAATCTTCATGGTACCGAGTTCGCC
GTTGCGACCTCAACCTTTCCCATCACATCTTCTT
Found at i:26150366 original size:7 final size:6
Alignment explanation
Indices: 26150344--26150399 Score: 50
Period size: 5 Copynumber: 9.8 Consensus size: 6
26150334 TTTTTCCCGG
26150344 TTTTTC TATTTT- TTTTTCC TTTTTC -TTTT- TTTTTC -TTTTC -TTTTC
1 TTTTTC T-TTTTC TTTTT-C TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
*
26150389 TTCTTC TTTTT
1 TTTTTC TTTTT
26150400 TATTTTTTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
5 22 0.52
6 11 0.26
7 9 0.21
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:26150372 original size:5 final size:5
Alignment explanation
Indices: 26150364--26150410 Score: 53
Period size: 5 Copynumber: 9.4 Consensus size: 5
26150354 TTTTTTTCCT
*
26150364 TTTTC TTTTT TTTTC TTTTC TTTTC TTCTTC TTTT- TTATT- TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TT-TTC TTTTC TT-TTC TTTTC TT
26150411 CATTGAATCC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
4 4 0.11
5 28 0.76
6 5 0.14
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:26150373 original size:26 final size:25
Alignment explanation
Indices: 26150344--26150410 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 25
26150334 TTTTTCCCGG
*
26150344 TTTTTCTATTTTTT-TTTCCTTTTTC
1 TTTTT-TATTTTTTCTTTCCTTCTTC
* *
26150369 TTTTTTTTTCTTTTCTTTTCTTCTTC
1 TTTTTTATT-TTTTCTTTCCTTCTTC
26150395 TTTTTTATTTTTTCTT
1 TTTTTTATTTTTTCTT
26150411 CATTGAATCC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 3 0.08
25 16 0.44
26 17 0.47
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (25 bp):
TTTTTTATTTTTTCTTTCCTTCTTC
Found at i:26150374 original size:16 final size:16
Alignment explanation
Indices: 26150353--26150407 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
26150343 GTTTTTCTAT
26150353 TTTTTTTTCCTTTTTC
1 TTTTTTTTCCTTTTTC
*
26150369 TTTTTTTTTC-TTTTC
1 TTTTTTTTCCTTTTTC
* *
26150384 TTTTCTTCTTCTTTTTTA
1 TTTT-TT-TTCCTTTTTC
26150402 TTTTTT
1 TTTTTT
26150408 CTTCATTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
15 9 0.28
16 11 0.34
17 4 0.12
18 8 0.25
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTTTTCCTTTTTC
Found at i:26150387 original size:20 final size:20
Alignment explanation
Indices: 26150347--26150411 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 20
26150337 TTCCCGGTTT
*
26150347 TTCTATTTTTTTTTCCTTTTTC
1 TTCT-TTTTTTTTTTC-TTTTC
26150369 TT-TTTTTTTCTTTTCTTTTC
1 TTCTTTTTTT-TTTTCTTTTC
*
26150389 TTCTTCTTTTTTATT-TTTTC
1 TTCTT-TTTTTTTTTCTTTTC
26150409 TTC
1 TTC
26150412 ATTGAATCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
20 21 0.55
21 10 0.26
22 7 0.18
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (20 bp):
TTCTTTTTTTTTTTCTTTTC
Found at i:26155621 original size:29 final size:29
Alignment explanation
Indices: 26155584--26155668 Score: 102
Period size: 30 Copynumber: 2.9 Consensus size: 29
26155574 GACACTTCGA
26155584 GGTTAAAATGGTAATTTTTGGAAAGTTT-AG
1 GGTT-AAATGGTAATTTTTGG-AAGTTTAAG
* *
26155614 GGTTAAATTTGCAATTTTTGGAAGTTTAAG
1 GGTTAAA-TGGTAATTTTTGGAAGTTTAAG
*
26155644 GGTAAAATGGTAATTTTT-GAAGTTT
1 GGTTAAATGGTAATTTTTGGAAGTTT
26155669 GAGGATAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
28 7 0.15
29 18 0.38
30 23 0.48
ACGTcount: A:0.32, C:0.01, G:0.25, T:0.42
Consensus pattern (29 bp):
GGTTAAATGGTAATTTTTGGAAGTTTAAG
Found at i:26155679 original size:29 final size:29
Alignment explanation
Indices: 26155553--26155753 Score: 137
Period size: 29 Copynumber: 6.9 Consensus size: 29
26155543 TTGGATGCTC
* * * *
26155553 GAGGGCAAAATAGTAA-TTTTGGACACTTC
1 GAGGGTAAAATGGTAATTTTTGGA-AGTTT
*
26155582 GAGGTTAAAATGGTAATTTTTGGAAAGTTT
1 GAGGGTAAAATGGTAATTTTTGG-AAGTTT
* * *
26155612 -AGGGTTAAATTTGCAATTTTTGGAAGTTT
1 GAGGG-TAAAATGGTAATTTTTGGAAGTTT
*
26155641 AAGGGTAAAATGGTAATTTTT-GAAGTTT
1 GAGGGTAAAATGGTAATTTTTGGAAGTTT
* * *
26155669 GAGGATAAAAAT-GTGA-TTTTGAAAAAGTTT
1 GAGGGT-AAAATGGTAATTTTTG--GAAGTTT
* * *
26155699 G-GGGACAAAAATGAT-ATTTTTGGAAGTTC
1 GAGGG--TAAAATGGTAATTTTTGGAAGTTT
*
26155728 GAGGGTAAAATGGTCATTTTTGGAAG
1 GAGGGTAAAATGGTAATTTTTGGAAG
26155754 CTCGTGGGCA
Statistics
Matches: 135, Mismatches: 23, Indels: 28
0.73 0.12 0.15
Matches are distributed among these distances:
27 4 0.03
28 21 0.16
29 59 0.44
30 44 0.33
31 7 0.05
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.35
Consensus pattern (29 bp):
GAGGGTAAAATGGTAATTTTTGGAAGTTT
Found at i:26155722 original size:87 final size:88
Alignment explanation
Indices: 26155627--26155786 Score: 225
Period size: 87 Copynumber: 1.8 Consensus size: 88
26155617 TAAATTTGCA
* * * *
26155627 ATTTTTGGAAGTTTAAGGGTAAAATGGTAATTTTT-GAAGTTTGAGGATAAAAATGTGATTT-TG
1 ATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTTGGAAGCTCGAGGACAAAAATGTGATTTCT-
26155690 AAAAAGTTTGGGGACAAAAATGAT
65 AAAAAGTTTGGGGACAAAAATGAT
* * * *
26155714 ATTTTTGGAAGTTCGAGGGTAAAATGGTCATTTTTGGAAGCTCGTGGGCAAAAATGTGATTTCTA
1 ATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTTGGAAGCTCGAGGACAAAAATGTGATTTCTA
26155779 AAAAGTTT
66 AAAAGTTT
26155787 TAGGTTAAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
87 32 0.51
88 30 0.48
89 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (88 bp):
ATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTTGGAAGCTCGAGGACAAAAATGTGATTTCTA
AAAAGTTTGGGGACAAAAATGAT
Found at i:26155766 original size:29 final size:28
Alignment explanation
Indices: 26155706--26155766 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
26155696 TTTGGGGACA
* *
26155706 AAAATGATATTTTTGGAAGTTCGAGGGT
1 AAAATGATATTTTTGGAAGCTCGAGGGC
* *
26155734 AAAATGGTCATTTTTGGAAGCTCGTGGGC
1 AAAATGAT-ATTTTTGGAAGCTCGAGGGC
26155763 AAAA
1 AAAA
26155767 ATGTGATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (28 bp):
AAAATGATATTTTTGGAAGCTCGAGGGC
Found at i:26155775 original size:29 final size:28
Alignment explanation
Indices: 26155704--26155775 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 28
26155694 AGTTTGGGGA
*
26155704 CAAAAATGATATTTTTGGAAGTTCGAGGG
1 CAAAAATG-TATTTTTGGAAGCTCGAGGG
* *
26155733 -TAAAATGGTCATTTTTGGAAGCTCGTGGG
1 CAAAAAT-GT-ATTTTTGGAAGCTCGAGGG
26155762 CAAAAATGTGATTT
1 CAAAAATGT-ATTT
26155776 CTAAAAAGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
28 6 0.17
29 24 0.69
30 5 0.14
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.33
Consensus pattern (28 bp):
CAAAAATGTATTTTTGGAAGCTCGAGGG
Found at i:26155912 original size:29 final size:29
Alignment explanation
Indices: 26155817--26155915 Score: 108
Period size: 30 Copynumber: 3.3 Consensus size: 29
26155807 TAGATGTTTG
* *
26155817 GGGGGTCAAAATATGATTTCTAGAAAGTTC
1 GGGGGTCAAAATGTAATTT-TAGAAAGTTC
* *
26155847 GGGGGTTAAAATGTAATTTTTAGAAAGTTT
1 GGGGGTCAAAATGTAA-TTTTAGAAAGTTC
** * *
26155877 AAGGGTCAAAATGTAATTTTGGAATGTTC
1 GGGGGTCAAAATGTAATTTTAGAAAGTTC
26155906 GGGGGTCAAA
1 GGGGGTCAAA
26155916 TTTTGATTAC
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
29 18 0.32
30 35 0.62
31 3 0.05
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.32
Consensus pattern (29 bp):
GGGGGTCAAAATGTAATTTTAGAAAGTTC
Found at i:26157809 original size:17 final size:17
Alignment explanation
Indices: 26157787--26157836 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
26157777 TTAATTAATT
*
26157787 AATTTAAATTTAAAGTA
1 AATTTAAATTTAAAATA
* * *
26157804 AATTTAAACTCAAAATG
1 AATTTAAATTTAAAATA
26157821 AATTTAAATTTAAAAT
1 AATTTAAATTTAAAAT
26157837 TCAAACTTGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:26157837 original size:30 final size:30
Alignment explanation
Indices: 26157803--26157871 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
26157793 AATTTAAAGT
* *
26157803 AAATTTAAAC-TCAAAATGAATTTAAATTTA
1 AAATTTAAACTTCAAAA-AAATTAAAATTTA
* *
26157833 AAATTCAAACTTGAAAAAAATTAAAATTTA
1 AAATTTAAACTTCAAAAAAATTAAAATTTA
*
26157863 AAAATTAAA
1 AAATTTAAA
26157872 ATTTGGACTC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 27 0.84
31 5 0.16
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (30 bp):
AAATTTAAACTTCAAAAAAATTAAAATTTA
Found at i:26157865 original size:14 final size:14
Alignment explanation
Indices: 26157848--26157875 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26157838 CAAACTTGAA
26157848 AAAAATTAAAATTT
1 AAAAATTAAAATTT
26157862 AAAAATTAAAATTT
1 AAAAATTAAAATTT
26157876 GGACTCAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAAAATTAAAATTT
Found at i:26159961 original size:51 final size:50
Alignment explanation
Indices: 26159873--26160065 Score: 237
Period size: 50 Copynumber: 3.8 Consensus size: 50
26159863 TTAATAAAGT
* *
26159873 CATGCATTATGTAACTTTCATATTAGTTAAGTATGCATCATAAATAATGA
1 CATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGA
* * *
26159923 CATGCATTATGAAACTCTCATGATTAGTTAAGTTTGCATCATAAATAAAGA
1 CATGCATTATGTAACTCTCATG-TTAGTTAAGTATGCATCATAAATAATGA
* * * *
26159974 CATGCATTAAGTAACT-TACATGTTAGTTAAATATGTATCATAAATTAT-A
1 CATGCATTATGTAACTCT-CATGTTAGTTAAGTATGCATCATAAATAATGA
* *
26160023 TCATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCAT
1 -CATGCATTATGTAACTCTCATGTTAGTT-AAGTATGCATCAT
26160066 TAAAAAATAA
Statistics
Matches: 121, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
49 1 0.01
50 66 0.55
51 54 0.45
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.37
Consensus pattern (50 bp):
CATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGA
Found at i:26160040 original size:101 final size:101
Alignment explanation
Indices: 26159865--26160065 Score: 289
Period size: 101 Copynumber: 2.0 Consensus size: 101
26159855 TTTTGCATTT
* * * *
26159865 AATAAAGTCATGCATTATGTAACTTTCATATTAGTTAAGTATGCATCATAAATAATGACATGCAT
1 AATAAAGACATGCATTAAGTAACTTACATATTAGTTAAATATGCATCATAAATAATGACATGCAT
*
26159930 TATGAAACTCTCATGATTAGTT-AAGTTTGCATCATA
66 TATGAAACTCCCATG-TTAGTTAAAGTTTGCATCATA
* * *
26159966 AATAAAGACATGCATTAAGTAACTTACATGTTAGTTAAATATGTATCATAAATTAT-ATCATGCA
1 AATAAAGACATGCATTAAGTAACTTACATATTAGTTAAATATGCATCATAAATAATGA-CATGCA
*
26160030 TTATGTAACTCCCATGTTAGTTAAAGTTTGCATCAT
65 TTATGAAACTCCCATGTTAGTTAAAGTTTGCATCAT
26160066 TAAAAAATAA
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
100 7 0.08
101 82 0.92
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (101 bp):
AATAAAGACATGCATTAAGTAACTTACATATTAGTTAAATATGCATCATAAATAATGACATGCAT
TATGAAACTCCCATGTTAGTTAAAGTTTGCATCATA
Found at i:26160623 original size:36 final size:36
Alignment explanation
Indices: 26160583--26160661 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
26160573 TAATTAAAAT
26160583 ACATGCCCTTTCATCTACTAAAAGACAAATGAAGAG
1 ACATGCCCTTTCATCTACTAAAAGACAAATGAAGAG
* * *
26160619 ACATGCCCTTTCATCTCCTCAAAGACAAATGACGAG
1 ACATGCCCTTTCATCTACTAAAAGACAAATGAAGAG
26160655 ACATGCC
1 ACATGCC
26160662 TTTTAAGCTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.37, C:0.28, G:0.14, T:0.22
Consensus pattern (36 bp):
ACATGCCCTTTCATCTACTAAAAGACAAATGAAGAG
Found at i:26163969 original size:2 final size:2
Alignment explanation
Indices: 26163962--26163987 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26163952 TCATTAACTA
26163962 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26163988 CATTTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26165979 original size:14 final size:14
Alignment explanation
Indices: 26165960--26165989 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26165950 AATTTAAATT
26165960 TTGAGTTAATCGAA
1 TTGAGTTAATCGAA
*
26165974 TTGAGTTATTCGAA
1 TTGAGTTAATCGAA
26165988 TT
1 TT
26165990 ATTCAAGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (14 bp):
TTGAGTTAATCGAA
Found at i:26168556 original size:5 final size:5
Alignment explanation
Indices: 26168546--26168579 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
26168536 TAATTATAGA
26168546 TTATT TTATT TTATCTT TTATT TTATT TTATT TT
1 TTATT TTATT TTA--TT TTATT TTATT TTATT TT
26168580 TGGGTTTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 22 0.81
7 5 0.19
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:26168566 original size:17 final size:16
Alignment explanation
Indices: 26168546--26168580 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
26168536 TAATTATAGA
26168546 TTATTTTATTTTATCTT
1 TTATTTTATTTTAT-TT
26168563 TTATTTTATTTTATTT
1 TTATTTTATTTTATTT
26168579 TT
1 TT
26168581 GGGTTTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (16 bp):
TTATTTTATTTTATTT
Found at i:26175100 original size:5 final size:5
Alignment explanation
Indices: 26175090--26175129 Score: 57
Period size: 5 Copynumber: 8.4 Consensus size: 5
26175080 TAATTATAGA
*
26175090 TTATT TTATT TTA-T CT-TT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
26175130 TGGGTTTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:26176814 original size:21 final size:21
Alignment explanation
Indices: 26176775--26176814 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26176765 ACATGCTTCC
* *
26176775 TTGTCGAGACATTATCGTCTG
1 TTGTCGAGACATCACCGTCTG
26176796 TTGTCGAGACATCACCGTC
1 TTGTCGAGACATCACCGTC
26176815 GTGTCTTCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.33
Consensus pattern (21 bp):
TTGTCGAGACATCACCGTCTG
Found at i:26180269 original size:23 final size:23
Alignment explanation
Indices: 26180225--26180312 Score: 88
Period size: 23 Copynumber: 3.8 Consensus size: 23
26180215 TTAATGTTCA
**
26180225 CGAACATGTTCATTTAAC-TTAAT
1 CGAACATGTTCA-CGAACATTAAT
* *
26180248 CGAACATGTTCACGAATATTAAA
1 CGAACATGTTCACGAACATTAAT
*
26180271 CGAACATGTTCATGAACATATAAT
1 CGAACATGTTCACGAACAT-TAAT
* *
26180295 TGAAGATGTTCACGAACA
1 CGAACATGTTCACGAACA
26180313 ATGTTAATGA
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
22 2 0.04
23 33 0.62
24 18 0.34
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.30
Consensus pattern (23 bp):
CGAACATGTTCACGAACATTAAT
Found at i:26186467 original size:23 final size:22
Alignment explanation
Indices: 26186431--26186474 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
26186421 TAAATATTTT
*
26186431 ATTAAATAATTTGAGTTGAATTA
1 ATTAAATAAATTGAGTT-AATTA
*
26186454 ATTAATTAAATTGAGTTAATT
1 ATTAAATAAATTGAGTTAATT
26186475 TTATTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.45
Consensus pattern (22 bp):
ATTAAATAAATTGAGTTAATTA
Found at i:26188230 original size:90 final size:91
Alignment explanation
Indices: 26188072--26188254 Score: 341
Period size: 90 Copynumber: 2.0 Consensus size: 91
26188062 ACTCAACAAT
* *
26188072 CCCCTAAACGTGGAACCAATAGCATGCATTAGATGTTTTGGATCACATTCAAGTGGATAAGGACC
1 CCCCTAAACGTGGAACCAATAGCATGCATTAGATCTTTTGGATCACATTCAAGGGGATAAGGACC
26188137 TACGCGAATCCAATATGGAGACATTA
66 TACGCGAATCCAATATGGAGACATTA
26188163 CCCC-AAACGTGGAACCAATAGCATGCATTAGATCTTTTGGATCACATTCAAGGGGATAAGGACC
1 CCCCTAAACGTGGAACCAATAGCATGCATTAGATCTTTTGGATCACATTCAAGGGGATAAGGACC
26188227 TACGCGAATCCAATATGGAGACATTA
66 TACGCGAATCCAATATGGAGACATTA
26188253 CC
1 CC
26188255 AGACGAATCT
Statistics
Matches: 90, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
90 86 0.96
91 4 0.04
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (91 bp):
CCCCTAAACGTGGAACCAATAGCATGCATTAGATCTTTTGGATCACATTCAAGGGGATAAGGACC
TACGCGAATCCAATATGGAGACATTA
Found at i:26189143 original size:23 final size:23
Alignment explanation
Indices: 26189095--26189145 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
26189085 TAGATAAATA
* * *
26189095 TTGAATTACACTTTGTATTTATT
1 TTGAATTAAAATTTGTATTTAGT
26189118 TTGAATTAAAATTT-TATTATAGT
1 TTGAATTAAAATTTGTATT-TAGT
26189141 TTGAA
1 TTGAA
26189146 ATATTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.53
Consensus pattern (23 bp):
TTGAATTAAAATTTGTATTTAGT
Found at i:26198141 original size:23 final size:22
Alignment explanation
Indices: 26198105--26198148 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
26198095 TAAATATTTC
*
26198105 ATTAAATAATTTGGGTTGAATTA
1 ATTAAATAAATTGGGTT-AATTA
*
26198128 ATTAATTAAATTGGGTTAATT
1 ATTAAATAAATTGGGTTAATT
26198149 TTATTACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (22 bp):
ATTAAATAAATTGGGTTAATTA
Found at i:26198154 original size:23 final size:24
Alignment explanation
Indices: 26198100--26198154 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 24
26198090 CATTTTAAAT
* *
26198100 ATTTCATTAAATAATTTGGGTTGA
1 ATTTAATTAAATAAATTGGGTTGA
*
26198124 A-TTAATTAATTAAATTGGGTT-A
1 ATTTAATTAAATAAATTGGGTTGA
*
26198146 ATTTTATTA
1 ATTTAATTA
26198155 CTTTAGTCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 2 0.08
23 23 0.88
24 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (24 bp):
ATTTAATTAAATAAATTGGGTTGA
Found at i:26202282 original size:2 final size:2
Alignment explanation
Indices: 26202277--26202301 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26202267 TGTTTCTTAT
26202277 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
26202302 TGGAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26214480 original size:24 final size:24
Alignment explanation
Indices: 26214452--26214514 Score: 99
Period size: 24 Copynumber: 2.6 Consensus size: 24
26214442 AGAAATAATC
*
26214452 TTTCAGTTAAACTCTGTTTATTTA
1 TTTCAGTTAAACTCTATTTATTTA
*
26214476 TTTCAATTAAACTCTATTTATTTA
1 TTTCAGTTAAACTCTATTTATTTA
*
26214500 TTTGAGTTAAACTCT
1 TTTCAGTTAAACTCT
26214515 TATTACTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (24 bp):
TTTCAGTTAAACTCTATTTATTTA
Found at i:26218444 original size:18 final size:16
Alignment explanation
Indices: 26218423--26218476 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 16
26218413 TTAAATTCCA
26218423 ATTTAACCCAAAATATTT
1 ATTTAACCCAAAA-A-TT
*
26218441 ATTTTTACCCAAAAATT
1 A-TTTAACCCAAAAATT
26218458 ATTTAAACCCATAAAATT
1 ATTT-AACCCA-AAAATT
26218476 A
1 A
26218477 ATTTTTCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
16 3 0.10
17 8 0.26
18 9 0.29
19 11 0.35
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (16 bp):
ATTTAACCCAAAAATT
Found at i:26219261 original size:18 final size:18
Alignment explanation
Indices: 26219238--26219288 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
26219228 TCCCTAACAT
26219238 AATTCCCATCGCCACCTC
1 AATTCCCATCGCCACCTC
*
26219256 AATTCCCATCGCCATCTC
1 AATTCCCATCGCCACCTC
* *
26219274 AATTCTCATCACCAC
1 AATTCCCATCGCCAC
26219289 TTTAATTCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.25, C:0.45, G:0.04, T:0.25
Consensus pattern (18 bp):
AATTCCCATCGCCACCTC
Found at i:26221976 original size:37 final size:38
Alignment explanation
Indices: 26221923--26221998 Score: 127
Period size: 37 Copynumber: 2.0 Consensus size: 38
26221913 AAAAACTATA
* *
26221923 TTACCCCCTACACTTTAGAAAACACATTGTCCCTAATG
1 TTACCCCCTACACTTTAAAAAACACATTGTCCCCAATG
26221961 TTACCCCC-ACACTTTAAAAAACACATTGTCCCCAATG
1 TTACCCCCTACACTTTAAAAAACACATTGTCCCCAATG
26221998 T
1 T
26221999 GTAATCCCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 28 0.78
38 8 0.22
ACGTcount: A:0.33, C:0.33, G:0.07, T:0.28
Consensus pattern (38 bp):
TTACCCCCTACACTTTAAAAAACACATTGTCCCCAATG
Found at i:26223151 original size:28 final size:28
Alignment explanation
Indices: 26223120--26223210 Score: 76
Period size: 28 Copynumber: 3.1 Consensus size: 28
26223110 GAAGTTTCAA
* *
26223120 AGAATACAGGGTTAAAATGTGATTTTGG
1 AGAATACAAGGTCAAAATGTGATTTTGG
**
26223148 AGAATTTAAGGTCAAAATGTGATTTTTGG
1 AGAATACAAGGTCAAAATGTGA-TTTTGG
** *
26223177 -GAAGGTTTGAAGGTCAAAACGTGATTTTGG
1 AGAA---TACAAGGTCAAAATGTGATTTTGG
26223207 AGAA
1 AGAA
26223211 GTTTGAGGGT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
28 21 0.40
29 6 0.12
30 6 0.12
31 19 0.37
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (28 bp):
AGAATACAAGGTCAAAATGTGATTTTGG
Found at i:26223293 original size:89 final size:89
Alignment explanation
Indices: 26223200--26223367 Score: 241
Period size: 89 Copynumber: 1.9 Consensus size: 89
26223190 TCAAAACGTG
* * *
26223200 ATTTTGGAGAAGTTTGAGGGTTAAAATGTAATTTT-GAAAAAGTTTAGGGGTTAAAATGTAATTT
1 ATTTTGGAAAAGTTTGAGGGTTAAAATGTAATTTTAG-AAAAGTTTAGGGGTCAAAATATAATTT
26223264 -TGGAAAAGTTTAGGGTTAAAATGAA
65 ATGG-AAAGTTTAGGGTTAAAATGAA
* * * *
26223289 ATTTTGGAAAAGTTTGGGGGTTTAAATGTAATTTTAGAGAAGTTTAGGGGTCAAAATATGATTTA
1 ATTTTGGAAAAGTTTGAGGGTTAAAATGTAATTTTAGAAAAGTTTAGGGGTCAAAATATAATTTA
26223354 TGGAAAGTTTAGGG
66 TGGAAAGTTTAGGG
26223368 ACCTATTGGG
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
89 66 0.94
90 4 0.06
ACGTcount: A:0.36, C:0.01, G:0.27, T:0.36
Consensus pattern (89 bp):
ATTTTGGAAAAGTTTGAGGGTTAAAATGTAATTTTAGAAAAGTTTAGGGGTCAAAATATAATTTA
TGGAAAGTTTAGGGTTAAAATGAA
Found at i:26223294 original size:59 final size:59
Alignment explanation
Indices: 26223128--26223337 Score: 217
Period size: 59 Copynumber: 3.5 Consensus size: 59
26223118 AAAGAATACA
* * * * * ** *
26223128 GGGTTAAAATGTGATTTTGGAGAA-TTTAAGGTCAAAATGTGATTTTTGGGAAGGTTT-G
1 GGGTTAAAATGTAATTTTGGAGAAGTTTAGGGTTAAAATG-AAATTTTGAAAAAGTTTAG
* * * * *
26223186 AAGGTCAAAACGTGATTTTGGAGAAGTTTGAGGGTTAAAATGTAATTTTGAAAAAGTTTAG
1 -GGGTTAAAATGTAATTTTGGAGAAGTTT-AGGGTTAAAATGAAATTTTGAAAAAGTTTAG
* * *
26223247 GGGTTAAAATGTAATTTTGGAAAAGTTTAGGGTTAAAATGAAATTTTGGAAAAGTTTGG
1 GGGTTAAAATGTAATTTTGGAGAAGTTTAGGGTTAAAATGAAATTTTGAAAAAGTTTAG
* *
26223306 GGGTTTAAATGTAATTTTAGAGAAGTTTAGGG
1 GGGTTAAAATGTAATTTTGGAGAAGTTTAGGG
26223338 GTCAAAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
59 78 0.61
60 38 0.30
61 11 0.09
ACGTcount: A:0.34, C:0.01, G:0.29, T:0.36
Consensus pattern (59 bp):
GGGTTAAAATGTAATTTTGGAGAAGTTTAGGGTTAAAATGAAATTTTGAAAAAGTTTAG
Found at i:26223364 original size:30 final size:29
Alignment explanation
Indices: 26223128--26223367 Score: 193
Period size: 30 Copynumber: 8.1 Consensus size: 29
26223118 AAAGAATACA
*
26223128 GGGTTAAAATGTGATTTTGGAGAA-TTTA-
1 GGGTTAAAATGTAATTTTGGA-AAGTTTAG
* * * *
26223156 AGGTCAAAATGTGATTTTTGGGAAGGTTT-G
1 GGGTTAAAATGT-AATTTT-GGAAAGTTTAG
* * * *
26223186 AAGGTCAAAACGTGATTTTGGAGAAGTTT-G
1 -GGGTTAAAATGTAATTTTGGA-AAGTTTAG
*
26223216 AGGGTTAAAATGTAATTTTGAAAAAGTTTAG
1 -GGGTTAAAATGTAATTTTG-GAAAGTTTAG
26223247 GGGTTAAAATGTAATTTTGGAAAAGTTTA-
1 GGGTTAAAATGTAATTTTGG-AAAGTTTAG
* *
26223276 GGGTTAAAATGAAATTTTGGAAAAGTTTGG
1 GGGTTAAAATGTAATTTTGG-AAAGTTTAG
* *
26223306 GGGTTTAAATGTAATTTTAGAGAAGTTTAG
1 GGGTTAAAATGTAATTTTGGA-AAGTTTAG
* * *
26223336 GGGTCAAAATATGATTTATGGAAAGTTTAG
1 GGGTTAAAATGTAATTT-TGGAAAGTTTAG
26223366 GG
1 GG
26223368 ACCTATTGGG
Statistics
Matches: 174, Mismatches: 26, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
28 10 0.06
29 36 0.21
30 112 0.64
31 16 0.09
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.35
Consensus pattern (29 bp):
GGGTTAAAATGTAATTTTGGAAAGTTTAG
Found at i:26230948 original size:59 final size:60
Alignment explanation
Indices: 26230884--26231169 Score: 280
Period size: 59 Copynumber: 4.8 Consensus size: 60
26230874 AAAGAATACG
* * * * *
26230884 GGGTCAAAATGTGATTTTGGAGAA-TTTAA-AGTTAAAATGTGATTTTTGGGAAGGTTTGA
1 GGGTCAAAATGTAATTTTGGAAAAGTTTAAGGGTTAAAATGT-AATTTTGGAAAGGTTTGA
* * * * *
26230943 AGGTCAAAACGTGATTTTGGAGAAGTTTGAAGGGTTAAAATGTAATTTTAGAAAGGTTT-A
1 GGGTCAAAATGTAATTTTGGAAAAGTTT-AAGGGTTAAAATGTAATTTTGGAAAGGTTTGA
* *
26231003 GGGATTAAAATGTAATTTTAGAAAAGTTTAAGGGTTAAAATGTAATTTTGGTAAA-GTTTG-
1 GGG-TCAAAATGTAATTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTGG-AAAGGTTTGA
* ** ** *
26231063 GGGTTAAAATGTAATTTTGGAAAAACTTAAGGGTTAAAATGTAATTTTGGAGAAACTTAG-
1 GGGTCAAAATGTAATTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTGGA-AAGGTTTGA
* * * *
26231123 GGGTCAAAATGAAATTTTGGAAAAGTTTGA-GGTCAAAATATAATTTT
1 GGGTCAAAATGTAATTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTT
26231170 TAAGAAATTT
Statistics
Matches: 194, Mismatches: 25, Indels: 16
0.83 0.11 0.07
Matches are distributed among these distances:
58 1 0.01
59 83 0.43
60 62 0.32
61 38 0.20
62 10 0.05
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.35
Consensus pattern (60 bp):
GGGTCAAAATGTAATTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTGGAAAGGTTTGA
Found at i:26230971 original size:30 final size:30
Alignment explanation
Indices: 26230885--26231198 Score: 157
Period size: 30 Copynumber: 10.5 Consensus size: 30
26230875 AAGAATACGG
26230885 GGTCAAAATGTGATTTTGGAGAA-TTT-AA
1 GGTCAAAATGTGATTTTGGAGAAGTTTGAA
* *
26230913 AGTTAAAATGTGATTTTTGG-GAAGGTTTGAA
1 GGTCAAAATGTGA-TTTTGGAGAA-GTTTGAA
*
26230944 GGTCAAAACGTGATTTTGGAGAAGTTTGAA
1 GGTCAAAATGTGATTTTGGAGAAGTTTGAA
* * * *
26230974 GGGTTAAAATGTAATTTTAGA-AAGGTTT-AG
1 -GGTCAAAATGTGATTTTGGAGAA-GTTTGAA
* * * *
26231004 GGATTAAAATGTAATTTTAGAAAAGTTT-AA
1 GG-TCAAAATGTGATTTTGGAGAAGTTTGAA
* * *
26231034 GGGTTAAAATGTAATTTTGGTA-AAGTTTG-G
1 -GGTCAAAATGTGATTTTGG-AGAAGTTTGAA
* * * **
26231064 GGTTAAAATGTAATTTTGGAAAAACTT-AA
1 GGTCAAAATGTGATTTTGGAGAAGTTTGAA
* * ** *
26231093 GGGTTAAAATGTAATTTTGGAGAAACTT-AGG
1 -GGTCAAAATGTGATTTTGGAGAAGTTTGA-A
** *
26231124 GGTCAAAATGAAATTTTGGAAAAGTTTG-A
1 GGTCAAAATGTGATTTTGGAGAAGTTTGAA
* * ** *
26231153 GGTCAAAATATAATTTTTAAGAAATTT-AA
1 GGTCAAAATGTGATTTTGGAGAAGTTTGAA
*
26231182 GGGTCAAAATATGATTT
1 -GGTCAAAATGTGATTT
26231199 ATAGAAACTT
Statistics
Matches: 236, Mismatches: 31, Indels: 36
0.78 0.10 0.12
Matches are distributed among these distances:
28 15 0.06
29 53 0.22
30 128 0.54
31 40 0.17
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.35
Consensus pattern (30 bp):
GGTCAAAATGTGATTTTGGAGAAGTTTGAA
Found at i:26231076 original size:89 final size:88
Alignment explanation
Indices: 26230956--26231213 Score: 245
Period size: 89 Copynumber: 2.9 Consensus size: 88
26230946 TCAAAACGTG
** *
26230956 ATTTTGGAGAAGTTTGAAGGGTTAAAATGTAATTTTAG-AAAGGTTTAGGGATTAAAATGTAATT
1 ATTTTGGA-AAGTTTG--GGGTTAAAATGTAATTTTAGAAAAACTTAAGGG-TTAAAATGTAATT
* * *
26231020 TTAGA-AAAGTTTAAGGGTTAAAATGTA
62 TTAGAGAAA-CTTAAGGGTCAAAATGAA
* *
26231047 ATTTTGGTAAAGTTTGGGGTTAAAATGTAATTTTGGAAAAACTTAAGGGTTAAAATGTAATTTTG
1 ATTTTGG-AAAGTTTGGGGTTAAAATGTAATTTTAGAAAAACTTAAGGGTTAAAATGTAATTTTA
*
26231112 GAGAAACTTAGGGGTCAAAATGAA
65 GAGAAACTTAAGGGTCAAAATGAA
* * * * * * * *
26231136 ATTTTGGAAAAGTTTGAGGTCAAAATATAATTTTTA-AGAAATTTAAGGGTCAAAATATGA-TTT
1 ATTTTGG-AAAGTTTGGGGTTAAAATGTAA-TTTTAGAAAAACTTAAGGGTTAAAATGTAATTTT
* *
26231199 ATAGAAACTTCAGGG
64 AGAGAAACTTAAGGG
26231214 ACCTATTGGG
Statistics
Matches: 140, Mismatches: 23, Indels: 11
0.80 0.13 0.06
Matches are distributed among these distances:
88 14 0.10
89 95 0.68
90 16 0.11
91 14 0.10
92 1 0.01
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.35
Consensus pattern (88 bp):
ATTTTGGAAAGTTTGGGGTTAAAATGTAATTTTAGAAAAACTTAAGGGTTAAAATGTAATTTTAG
AGAAACTTAAGGGTCAAAATGAA
Found at i:26231213 original size:29 final size:30
Alignment explanation
Indices: 26231085--26231213 Score: 81
Period size: 30 Copynumber: 4.4 Consensus size: 30
26231075 AATTTTGGAA
* * *
26231085 AAACTTAAGGGTTAAAATGTAATTT-TGGAG
1 AAACTTAAGGGTCAAAATATAATTTAT-AAG
* *
26231115 AAACTTAGGGGTCAAAATGA-AATTT-T-GG
1 AAACTTAAGGGTCAAAAT-ATAATTTATAAG
* * *
26231143 AAAAGTT-TGAGGTCAAAATATAATTTTTAAG
1 -AAACTTAAG-GGTCAAAATATAATTTATAAG
* *
26231174 AAATTTAAGGGTCAAAATATGATTTAT-AG
1 AAACTTAAGGGTCAAAATATAATTTATAAG
*
26231203 AAACTTCAGGG
1 AAACTTAAGGG
26231214 ACCTATTGGG
Statistics
Matches: 79, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
28 3 0.04
29 30 0.38
30 44 0.56
31 2 0.03
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (30 bp):
AAACTTAAGGGTCAAAATATAATTTATAAG
Found at i:26231600 original size:15 final size:17
Alignment explanation
Indices: 26231566--26231598 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26231556 CTCTTTCTTC
26231566 TCTCTCTTTTCTTTTTT
1 TCTCTCTTTTCTTTTTT
26231583 TCTCTCTTTT-TTTTTT
1 TCTCTCTTTTCTTTTTT
26231599 CTGGTAAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (17 bp):
TCTCTCTTTTCTTTTTT
Found at i:26242263 original size:16 final size:17
Alignment explanation
Indices: 26242242--26242275 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
26242232 CTTGAAACCT
*
26242242 TAAATA-CTAACCATTA
1 TAAATATCTAAACATTA
26242258 TAAATATCTAAACATTA
1 TAAATATCTAAACATTA
26242275 T
1 T
26242276 TTTAACTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAATATCTAAACATTA
Found at i:26247660 original size:18 final size:15
Alignment explanation
Indices: 26247628--26247656 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26247618 CTGCACGATG
26247628 CTTCTTCTTCCTCCT
1 CTTCTTCTTCCTCCT
26247643 CTTCTTC-TCCTCCT
1 CTTCTTCTTCCTCCT
26247657 TCCTGTGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (15 bp):
CTTCTTCTTCCTCCT
Found at i:26256127 original size:15 final size:15
Alignment explanation
Indices: 26256107--26256139 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
26256097 GTTGGGATAA
26256107 TGATGAGCTCAAGTC
1 TGATGAGCTCAAGTC
26256122 TGATGAGCTCAAGTC
1 TGATGAGCTCAAGTC
26256137 TGA
1 TGA
26256140 GGATCATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (15 bp):
TGATGAGCTCAAGTC
Found at i:26259110 original size:29 final size:29
Alignment explanation
Indices: 26259078--26259140 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
26259068 AAAGAAAATC
*
26259078 CATCTCGTCAAAATAATTTTTTCAGAACA
1 CATCTCGTCAAAATAACTTTTTCAGAACA
* ** * *
26259107 CATCACGTCAATTTTACTTTTTCAGAACT
1 CATCTCGTCAAAATAACTTTTTCAGAACA
26259136 CATCT
1 CATCT
26259141 TCTGAAATTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (29 bp):
CATCTCGTCAAAATAACTTTTTCAGAACA
Found at i:26271432 original size:24 final size:24
Alignment explanation
Indices: 26271379--26271426 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26271369 CCACAAGGAA
26271379 AAATCCTAAGGACATTGTATGCTT
1 AAATCCTAAGGACATTGTATGCTT
26271403 AAATCCTAAGGACATTGTATGCTT
1 AAATCCTAAGGACATTGTATGCTT
26271427 TGATCCAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (24 bp):
AAATCCTAAGGACATTGTATGCTT
Found at i:26277934 original size:20 final size:21
Alignment explanation
Indices: 26277896--26277938 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
26277886 ACTAATAAGT
26277896 AAGTCTCAAACCAAAAATGCA
1 AAGTCTCAAACCAAAAATGCA
26277917 AAGTCTCAAACC-AAAATGCA
1 AAGTCTCAAACCAAAAATGCA
26277937 AA
1 AA
26277939 TTATCGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.53, C:0.23, G:0.09, T:0.14
Consensus pattern (21 bp):
AAGTCTCAAACCAAAAATGCA
Found at i:26286835 original size:199 final size:199
Alignment explanation
Indices: 26286495--26286894 Score: 800
Period size: 199 Copynumber: 2.0 Consensus size: 199
26286485 ATTTGGTTAA
26286495 TTACATCGTGTGTGGAAAACTACCCTTGGGTGTCACAGGCCACAAGAAAGAAAGATTTCTTCGTG
1 TTACATCGTGTGTGGAAAACTACCCTTGGGTGTCACAGGCCACAAGAAAGAAAGATTTCTTCGTG
26286560 AAGTATAGAAATACCATTGCAATGAGCCGTATTTATTAAAGGTATGCAATGACAATATCATTCGG
66 AAGTATAGAAATACCATTGCAATGAGCCGTATTTATTAAAGGTATGCAATGACAATATCATTCGG
26286625 CGTTGTGTTTCGAAAGAAGAAATGCTTTCAATACTAAAGCATTACCATGATGCTCCTTATGGAGG
131 CGTTGTGTTTCGAAAGAAGAAATGCTTTCAATACTAAAGCATTACCATGATGCTCCTTATGGAGG
26286690 TCAT
196 TCAT
26286694 TTACATCGTGTGTGGAAAACTACCCTTGGGTGTCACAGGCCACAAGAAAGAAAGATTTCTTCGTG
1 TTACATCGTGTGTGGAAAACTACCCTTGGGTGTCACAGGCCACAAGAAAGAAAGATTTCTTCGTG
26286759 AAGTATAGAAATACCATTGCAATGAGCCGTATTTATTAAAGGTATGCAATGACAATATCATTCGG
66 AAGTATAGAAATACCATTGCAATGAGCCGTATTTATTAAAGGTATGCAATGACAATATCATTCGG
26286824 CGTTGTGTTTCGAAAGAAGAAATGCTTTCAATACTAAAGCATTACCATGATGCTCCTTATGGAGG
131 CGTTGTGTTTCGAAAGAAGAAATGCTTTCAATACTAAAGCATTACCATGATGCTCCTTATGGAGG
26286889 TCAT
196 TCAT
26286893 TT
1 TT
26286895 CGATGGAATG
Statistics
Matches: 201, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
199 201 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (199 bp):
TTACATCGTGTGTGGAAAACTACCCTTGGGTGTCACAGGCCACAAGAAAGAAAGATTTCTTCGTG
AAGTATAGAAATACCATTGCAATGAGCCGTATTTATTAAAGGTATGCAATGACAATATCATTCGG
CGTTGTGTTTCGAAAGAAGAAATGCTTTCAATACTAAAGCATTACCATGATGCTCCTTATGGAGG
TCAT
Found at i:26290211 original size:11 final size:11
Alignment explanation
Indices: 26290191--26290241 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
26290181 TTGTTAGTAA
26290191 GCATTGTCATT
1 GCATTGTCATT
*
26290202 GCATTTTCATT
1 GCATTGTCATT
26290213 GTCATTG-CATTTT
1 G-CATTGTCA--TT
*
26290226 CCATTGTCATT
1 GCATTGTCATT
26290237 GCATT
1 GCATT
26290242 TTAGTGTTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 19 0.59
12 9 0.28
13 4 0.12
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.49
Consensus pattern (11 bp):
GCATTGTCATT
Found at i:26290214 original size:17 final size:18
Alignment explanation
Indices: 26290192--26290243 Score: 97
Period size: 17 Copynumber: 2.9 Consensus size: 18
26290182 TGTTAGTAAG
26290192 CATTGTCATTGCATTTT-
1 CATTGTCATTGCATTTTC
26290209 CATTGTCATTGCATTTTC
1 CATTGTCATTGCATTTTC
26290227 CATTGTCATTGCATTTT
1 CATTGTCATTGCATTTT
26290244 AGTGTTAGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 17 0.50
18 17 0.50
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (18 bp):
CATTGTCATTGCATTTTC
Found at i:26290237 original size:6 final size:6
Alignment explanation
Indices: 26290192--26290241 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
26290182 TGTTAGTAAG
* *
26290192 CATTGT CATTG- CATTTT CATTGT CATTG- CATTTT CCATTGT CATTG-
1 CATTGT CATTGT CATTGT CATTGT CATTGT CATTGT -CATTGT CATTGT
26290238 CATT
1 CATT
26290242 TTAGTGTTAG
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
5 12 0.32
6 20 0.54
7 5 0.14
ACGTcount: A:0.18, C:0.20, G:0.12, T:0.50
Consensus pattern (6 bp):
CATTGT
Found at i:26297976 original size:29 final size:29
Alignment explanation
Indices: 26297938--26298117 Score: 109
Period size: 29 Copynumber: 6.2 Consensus size: 29
26297928 AGATTTTTGT
*
26297938 TAAAGGAAACTCCTTTGTGACAATCTCTG
1 TAAAGGAAACACCTTTGTGACAATCTCTG
* * *
26297967 TAAAGAAAACACCATTGTGGA-AATCTTTG
1 TAAAGGAAACACCTTTGT-GACAATCTCTG
* * * * * * *
26297996 TAAAGTAAACGCATTTATGGCAATATCTAT
1 TAAAGGAAACACCTTTGTGACAATCTCT-G
*
26298026 TAAAGGAAATC-CC-TTGTGGCAATCTCTG
1 TAAAGGAAA-CACCTTTGTGACAATCTCTG
* * * * *
26298054 TAAAGGAAACACTTTTATGGCGATCTCCG
1 TAAAGGAAACACCTTTGTGACAATCTCTG
* *
26298083 TTAAA-TAAA-AGCCTTTGTGATAATCTCTG
1 -TAAAGGAAACA-CCTTTGTGACAATCTCTG
26298112 TAAAGG
1 TAAAGG
26298118 GAGCCCTTAT
Statistics
Matches: 112, Mismatches: 30, Indels: 18
0.70 0.19 0.11
Matches are distributed among these distances:
27 1 0.01
28 16 0.14
29 79 0.71
30 15 0.13
31 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (29 bp):
TAAAGGAAACACCTTTGTGACAATCTCTG
Found at i:26298000 original size:58 final size:58
Alignment explanation
Indices: 26297922--26298072 Score: 135
Period size: 58 Copynumber: 2.6 Consensus size: 58
26297912 GGGTAAGCCT
* * * * * *
26297922 TTGTGGAGATTTTTGTTAAAGGAAACTCCTTTGTGACAATCTCT-GTAAA-GAAAACACC
1 TTGTGGAAATCTTTG-TAAAGGAAACGCATTTATGACAATATCTAGTAAAGGAAAAC-CC
* * * *
26297980 ATTGTGGAAATCTTTGTAAAGTAAACGCATTTATGGCAATATCTATTAAAGGAAATCCC
1 -TTGTGGAAATCTTTGTAAAGGAAACGCATTTATGACAATATCTAGTAAAGGAAAACCC
* * * *
26298039 TTGTGGCAATCTCTGTAAAGGAAACACTTTTATG
1 TTGTGGAAATCTTTGTAAAGGAAACGCATTTATG
26298073 GCGATCTCCG
Statistics
Matches: 75, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
58 51 0.68
59 19 0.25
60 5 0.07
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.33
Consensus pattern (58 bp):
TTGTGGAAATCTTTGTAAAGGAAACGCATTTATGACAATATCTAGTAAAGGAAAACCC
Found at i:26298087 original size:58 final size:58
Alignment explanation
Indices: 26297967--26298117 Score: 144
Period size: 58 Copynumber: 2.6 Consensus size: 58
26297957 ACAATCTCTG
* * * *
26297967 TAAAGAAAA-CACCATTGTGGAAATCTTTGTAAAGTAAACGCATTTATGGCAATATCTAT
1 TAAAGAAAAGC-CC-TTGTGGAAATCTCTGTAAAGGAAACACATTTATGGCAATATCCAT
* * * * * * *
26298026 TAAAGGAAATCCCTTGTGGCAATCTCTGTAAAGGAAACACTTTTATGGCGATCTCCGT
1 TAAAGAAAAGCCCTTGTGGAAATCTCTGTAAAGGAAACACATTTATGGCAATATCCAT
* *
26298084 TAAATAAAAGCCTTTGT-GATAATCTCTGTAAAGG
1 TAAAGAAAAGCCCTTGTGGA-AATCTCTGTAAAGG
26298118 GAGCCCTTAT
Statistics
Matches: 75, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
57 1 0.01
58 63 0.84
59 10 0.13
60 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (58 bp):
TAAAGAAAAGCCCTTGTGGAAATCTCTGTAAAGGAAACACATTTATGGCAATATCCAT
Found at i:26303213 original size:6 final size:6
Alignment explanation
Indices: 26303204--26303240 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
26303194 CCAAAAATTG
* *
26303204 AAATGA AAATGA AAATGA AAATGG AAATGG AAATGA A
1 AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA A
26303241 CCATTTGCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.22, T:0.16
Consensus pattern (6 bp):
AAATGA
Found at i:26309453 original size:12 final size:12
Alignment explanation
Indices: 26309436--26309476 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
26309426 CAGGTTCAAT
26309436 TTCTTCCTTCTC
1 TTCTTCCTTCTC
26309448 TTCTTCCTT-TC
1 TTCTTCCTTCTC
*
26309459 GTTCTT-CTTCTT
1 -TTCTTCCTTCTC
26309471 TTCTTC
1 TTCTTC
26309477 ACCCTTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.00, C:0.34, G:0.02, T:0.63
Consensus pattern (12 bp):
TTCTTCCTTCTC
Found at i:26331275 original size:24 final size:24
Alignment explanation
Indices: 26331247--26331293 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26331237 GTTTCTACTC
* *
26331247 ATTTTTCTCT-TTTTCTCTTTTTG
1 ATTTTTTTCTATTTTCTCATTTTG
26331270 ATTTTTTTCTATTTTCTCATTTTG
1 ATTTTTTTCTATTTTCTCATTTTG
26331294 GCTACACTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.09, C:0.15, G:0.04, T:0.72
Consensus pattern (24 bp):
ATTTTTTTCTATTTTCTCATTTTG
Found at i:26340274 original size:26 final size:26
Alignment explanation
Indices: 26340237--26340306 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 26
26340227 AAAAAATTCG
26340237 GTGATT-TAATAGCAGGCTTCAAGCCA
1 GTGATTAT-ATAGCAGGCTTCAAGCCA
* *
26340263 GTGATTATATAGCATGCTTCAAGCCG
1 GTGATTATATAGCAGGCTTCAAGCCA
26340289 GTGATTAT-TAGCAGGCTT
1 GTGATTATATAGCAGGCTT
26340307 TGTGCCGGTG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
25 9 0.22
26 30 0.75
27 1 0.03
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (26 bp):
GTGATTATATAGCAGGCTTCAAGCCA
Found at i:26347487 original size:26 final size:26
Alignment explanation
Indices: 26347451--26347656 Score: 233
Period size: 26 Copynumber: 8.1 Consensus size: 26
26347441 AGCAAATCGA
26347451 TGATTTAATAGCAGGCTTCGAGCCGG
1 TGATTTAATAGCAGGCTTCGAGCCGG
*
26347477 TGATTTAATAGCAGGCTTCGAGTCGG
1 TGATTTAATAGCAGGCTTCGAGCCGG
* * *
26347503 TGACTTAAGAGCAAGCTTCGAGCCGG
1 TGATTTAATAGCAGGCTTCGAGCCGG
* **
26347529 TGATTTAATAGCAAGCTTCGAGCCAT
1 TGATTTAATAGCAGGCTTCGAGCCGG
**
26347555 TGATTTAATAGCAGGCTTCGAGCCAA
1 TGATTTAATAGCAGGCTTCGAGCCGG
* * *
26347581 TGATTTAATAGCAAGCTTTGAGCCAG
1 TGATTTAATAGCAGGCTTCGAGCCGG
* *
26347607 TGA-TT--T-GCTGGCTTCAAGCCGG
1 TGATTTAATAGCAGGCTTCGAGCCGG
* *
26347629 TGA-TTATTAGCAGGCTTCGTGCCGG
1 TGATTTAATAGCAGGCTTCGAGCCGG
26347654 TGA
1 TGA
26347657 ATAATTGGCA
Statistics
Matches: 155, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
22 16 0.10
23 1 0.01
24 1 0.01
25 18 0.12
26 119 0.77
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (26 bp):
TGATTTAATAGCAGGCTTCGAGCCGG
Found at i:26351115 original size:37 final size:38
Alignment explanation
Indices: 26351074--26351147 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 38
26351064 TCATGCAACG
*
26351074 ATAGTCCTGGGTCCAA-TTGAAGAATACTTATGCAGCA
1 ATAGTCCTGGATCCAATTTGAAGAATACTTATGCAGCA
* * *
26351111 ATAGTTCTGGATGCAATTTGAAGAATATTTATGCAGC
1 ATAGTCCTGGATCCAATTTGAAGAATACTTATGCAGC
26351148 GACAATCTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 13 0.41
38 19 0.59
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (38 bp):
ATAGTCCTGGATCCAATTTGAAGAATACTTATGCAGCA
Found at i:26352225 original size:17 final size:17
Alignment explanation
Indices: 26352186--26352243 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
26352176 ATATATATGG
* **
26352186 AAATGCAATGACAATGT
1 AAATGCAACGACAATAA
* *
26352203 AGATGCAACGACCATAA
1 AAATGCAACGACAATAA
**
26352220 AAATGCAGTGACAATAA
1 AAATGCAACGACAATAA
26352237 AAATGCA
1 AAATGCA
26352244 GTGATATTTA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.50, C:0.16, G:0.17, T:0.17
Consensus pattern (17 bp):
AAATGCAACGACAATAA
Found at i:26354457 original size:16 final size:16
Alignment explanation
Indices: 26354436--26354466 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26354426 ATAATGTGAA
26354436 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
26354452 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
26354467 GGATCCACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:26355244 original size:26 final size:26
Alignment explanation
Indices: 26355208--26355259 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26355198 ATTCTGGGCG
* *
26355208 CAATTCTGGACATGTTCATGCAGCGA
1 CAATTATGGACATATTCATGCAGCGA
26355234 CAATTATGGACATATTCATGCAGCGA
1 CAATTATGGACATATTCATGCAGCGA
26355260 TGTTCCTGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CAATTATGGACATATTCATGCAGCGA
Found at i:26355831 original size:16 final size:16
Alignment explanation
Indices: 26355810--26355840 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26355800 ATAATGTGAA
26355810 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
26355826 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
26355841 GGATCCATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:26356692 original size:26 final size:26
Alignment explanation
Indices: 26356639--26356696 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
26356629 ATTTTGGATG
* *
26356639 CAATTCTAGACACGTTCATGCAATGA
1 CAATTCCAGACACGTTCATGCAACGA
* *
26356665 CAATTCCAGACATGTTCATGCAGCGA
1 CAATTCCAGACACGTTCATGCAACGA
26356691 C-ATTCC
1 CAATTCC
26356697 TAAGTGCAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 5 0.18
26 23 0.82
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
CAATTCCAGACACGTTCATGCAACGA
Found at i:26357924 original size:17 final size:17
Alignment explanation
Indices: 26357904--26357960 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 17
26357894 GAAATGCAAT
* *
26357904 GACAATATAGATGCAGC
1 GACAATAAAAATGCAGC
*
26357921 GACAATAAAAATGCAGT
1 GACAATAAAAATGCAGC
* *
26357938 GACAATAAAAATGTAGG
1 GACAATAAAAATGCAGC
26357955 GACAAT
1 GACAAT
26357961 TATACTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.49, C:0.12, G:0.21, T:0.18
Consensus pattern (17 bp):
GACAATAAAAATGCAGC
Found at i:26357959 original size:34 final size:34
Alignment explanation
Indices: 26357895--26357960 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
26357885 ATATATATGG
* *
26357895 AAATGCAATGACAATATAGATGCAGCGACAATAA
1 AAATGCAATGACAATAAAAATGCAGCGACAATAA
* * *
26357929 AAATGCAGTGACAATAAAAATGTAGGGACAAT
1 AAATGCAATGACAATAAAAATGCAGCGACAAT
26357961 TATACTACAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.50, C:0.12, G:0.20, T:0.18
Consensus pattern (34 bp):
AAATGCAATGACAATAAAAATGCAGCGACAATAA
Found at i:26368059 original size:14 final size:15
Alignment explanation
Indices: 26368032--26368064 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
26368022 TTTTCTCTTA
26368032 TTTACTTATTTTATT
1 TTTACTTATTTTATT
26368047 TTTACTT-TTTTATT
1 TTTACTTATTTTATT
26368061 TTTA
1 TTTA
26368065 TGCTTTCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTACTTATTTTATT
Found at i:26369297 original size:26 final size:25
Alignment explanation
Indices: 26369259--26369307 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
26369249 ACGTGGCAAA
* *
26369259 AAAATAAAGCAAAATTAATAAATAT
1 AAAATAAAACAAAAATAATAAATAT
*
26369284 AAAATAAAAACAAAAATCATAAAT
1 AAAAT-AAAACAAAAATAATAAAT
26369308 CCCCAAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 5 0.25
26 15 0.75
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.20
Consensus pattern (25 bp):
AAAATAAAACAAAAATAATAAATAT
Found at i:26369477 original size:17 final size:17
Alignment explanation
Indices: 26369455--26369498 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
26369445 ATATTCTTTG
26369455 AATCCCTAAAATATTGA
1 AATCCCTAAAATATTGA
*
26369472 AATCCCCAAAATATTGA
1 AATCCCTAAAATATTGA
*
26369489 AATCCATAAA
1 AATCCCTAAA
26369499 TCGTTAGCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.50, C:0.20, G:0.05, T:0.25
Consensus pattern (17 bp):
AATCCCTAAAATATTGA
Found at i:26374125 original size:25 final size:26
Alignment explanation
Indices: 26374086--26374137 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
26374076 TCCCCTATTC
26374086 ACTTTTTATCTTTTTGGTAGAAAAAT
1 ACTTTTTATCTTTTTGGTAGAAAAAT
26374112 ACTTTTTATC-TTTTGGTAGAAAAAT
1 ACTTTTTATCTTTTTGGTAGAAAAAT
26374137 A
1 A
26374138 TCATAGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.48
Consensus pattern (26 bp):
ACTTTTTATCTTTTTGGTAGAAAAAT
Found at i:26384211 original size:3 final size:3
Alignment explanation
Indices: 26384203--26384227 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
26384193 ATGATTTGAT
26384203 GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA G
26384228 GAGGTTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:26390865 original size:25 final size:24
Alignment explanation
Indices: 26390837--26390895 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
26390827 TCATTTTATG
* *
26390837 TTTATATATCACGTATATAAATAAT
1 TTTATATATCA-ATATAAAAATAAT
* *
26390862 TTTATTTATTTAATATAAAAATAAT
1 TTTATATA-TCAATATAAAAATAAT
26390887 TTTATATAT
1 TTTATATAT
26390896 TTAATTTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 1 0.04
25 25 0.89
26 2 0.07
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (24 bp):
TTTATATATCAATATAAAAATAAT
Found at i:26390896 original size:25 final size:25
Alignment explanation
Indices: 26390850--26390900 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
26390840 ATATATCACG
* *
26390850 TATATAAATAATTTTATTTATTTAA
1 TATAAAAATAATTTTATATATTTAA
26390875 TATAAAAATAATTTTATATATTTAA
1 TATAAAAATAATTTTATATATTTAA
26390900 T
1 T
26390901 TTTTTAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TATAAAAATAATTTTATATATTTAA
Found at i:26391886 original size:20 final size:20
Alignment explanation
Indices: 26391848--26391887 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26391838 AATGGCCACA
*
26391848 ATATTTATTTTAATTTTTAC
1 ATATTTATTTTAACTTTTAC
26391868 ATATTTCATTTT-ACTTTTAC
1 ATATTT-ATTTTAACTTTTAC
26391888 CCATAGTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (20 bp):
ATATTTATTTTAACTTTTAC
Found at i:26399395 original size:51 final size:51
Alignment explanation
Indices: 26399338--26399623 Score: 349
Period size: 51 Copynumber: 5.6 Consensus size: 51
26399328 TAAACGAAAA
* * * *
26399338 GGTCCGATGACTAAGTATTATCGTGAGGAAATGAATCCTTTACGGATTAAA
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAG
26399389 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAG
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAG
*
26399440 GGTCCGATGACTAAGTGTCATTGTGAGTAAATGAATCCTTTACGGATTAAG
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAG
** * * * * *
26399491 GGTTTGATGACTAAGTGTCATCGTGAGTAAATTAATCCATGATGAATTAAG
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAG
** * * * * **
26399542 GGTCCGATGACTTTGTGTCATCGTGAGTATAGGAATTCCTATATGGAACAAG
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAA-TCCTTTACGGATTAAG
*
26399594 AGGTCCGATGACTATA-TGACATCGTGAGTA
1 -GGTCCGATGACTA-AGTGTCATCGTGAGTA
26399624 TAAAATGAAA
Statistics
Matches: 203, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
51 168 0.83
52 10 0.05
53 25 0.12
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (51 bp):
GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAG
Found at i:26406720 original size:51 final size:51
Alignment explanation
Indices: 26406660--26406913 Score: 409
Period size: 51 Copynumber: 5.0 Consensus size: 51
26406650 CTATAAACGG
* *
26406660 AAAGGTCCGATGACTAAGTGTCATCGTGAGGAATTGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* *
26406711 AAAGGTCCGATGACTAAGTGTCATTGTGAGTAAATGAATCCTTTACAGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * *
26406762 AAAGGTCTGATGACTAAGTGTCATTGTGAGTAAATGAATCCTTTACAGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
**
26406813 AAAGGTCTAATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* *
26406864 AAAGGTCCGATGAGTAAGTGTCATCGTGAGTAAATGAATCCTTTATGGAT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGAT
26406914 CAAAATTACC
Statistics
Matches: 191, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 191 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.31
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
Found at i:26407645 original size:27 final size:27
Alignment explanation
Indices: 26407611--26407665 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
26407601 AGAGAGGGAG
* *
26407611 GGGAGGAAGCTGTTTTAGAGGGAAATA
1 GGGAGGAAGCTGTTCTAAAGGGAAATA
* *
26407638 GGGAGGAAGTTGTTCTAAAGGGAGATA
1 GGGAGGAAGCTGTTCTAAAGGGAAATA
26407665 G
1 G
26407666 TGATAGTGAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.42, T:0.22
Consensus pattern (27 bp):
GGGAGGAAGCTGTTCTAAAGGGAAATA
Found at i:26420355 original size:28 final size:27
Alignment explanation
Indices: 26420324--26420397 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
26420314 TAAATTTTGC
*
26420324 CCTTTTATTCTATTTTTTTAAATTAAAT
1 CCTTTTATTCTATTTTTTTAAAAT-AAT
** *
26420352 CCTTTTATTC-CCTTTTTAAAAATAAT
1 CCTTTTATTCTATTTTTTTAAAATAAT
* *
26420378 CCTTTTGTTTTATTTTTTTA
1 CCTTTTATTCTATTTTTTTA
26420398 TTTTTTAATA
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
26 11 0.31
27 15 0.42
28 10 0.28
ACGTcount: A:0.24, C:0.14, G:0.01, T:0.61
Consensus pattern (27 bp):
CCTTTTATTCTATTTTTTTAAAATAAT
Found at i:26420413 original size:17 final size:17
Alignment explanation
Indices: 26420391--26420435 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
26420381 TTTGTTTTAT
*
26420391 TTTTTTATTTTTTAATA
1 TTTTTTATTTATTAATA
* *
26420408 TTTTTTAATTATTCATA
1 TTTTTTATTTATTAATA
*
26420425 TTATTTATTTA
1 TTTTTTATTTA
26420436 ATCTTGGTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTATTTATTAATA
Found at i:26422404 original size:29 final size:30
Alignment explanation
Indices: 26422362--26422426 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
26422352 ATTTTTAAGG
* * *
26422362 AATTTGGAGATTAAAATTGAATTTTTGGAA
1 AATTTGGAGATTAAAATCGAACTTTTAGAA
*
26422392 AATTTGG-TATTAAAATCGAACTTTTAGAA
1 AATTTGGAGATTAAAATCGAACTTTTAGAA
26422421 AATTTG
1 AATTTG
26422427 AGGTCGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 24 0.77
30 7 0.23
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (30 bp):
AATTTGGAGATTAAAATCGAACTTTTAGAA
Found at i:26422445 original size:29 final size:29
Alignment explanation
Indices: 26422413--26422474 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
26422403 AAAATCGAAC
*
26422413 TTTTAGAAAATTTGAGGTCGAAAAT-GTGA
1 TTTTAGAAAATTTGAGGGC-AAAATGGTGA
* * *
26422442 TTTTTGGAAGTTTGAGGGCAAAATGGTGA
1 TTTTAGAAAATTTGAGGGCAAAATGGTGA
26422471 TTTT
1 TTTT
26422475 TTGATGCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 5 0.18
29 23 0.82
ACGTcount: A:0.31, C:0.03, G:0.27, T:0.39
Consensus pattern (29 bp):
TTTTAGAAAATTTGAGGGCAAAATGGTGA
Found at i:26422493 original size:29 final size:29
Alignment explanation
Indices: 26422455--26422677 Score: 263
Period size: 29 Copynumber: 7.7 Consensus size: 29
26422445 TTGGAAGTTT
* * *
26422455 GAGGGCAAAATGGTGATTTTTTGATGCTC
1 GAGGGTAAAATGGTAATTTTTAGATGCTC
* *
26422484 G-GTGGTAAAATGATAATTTTTTGATGCTC
1 GAG-GGTAAAATGGTAATTTTTAGATGCTC
* *
26422513 AAGGGTAAAATGGTAATTGTTAGATGCTC
1 GAGGGTAAAATGGTAATTTTTAGATGCTC
*
26422542 GAGGGTAAAATGGTAA-TTTTAAATGCTC
1 GAGGGTAAAATGGTAATTTTTAGATGCTC
* *
26422570 GAGGGTAAAATGGTAATTTTTGGATACTC
1 GAGGGTAAAATGGTAATTTTTAGATGCTC
*
26422599 GAGGGTAAAATGGTAATTTTTAGATGTTC
1 GAGGGTAAAATGGTAATTTTTAGATGCTC
* * *
26422628 AAGGGTAAAATGGTAATTTTTAGAAAG-TT
1 GAGGGTAAAATGGTAATTTTTAG-ATGCTC
*
26422657 TAGGGTCAAAATGGTAATTTT
1 GAGGGT-AAAATGGTAATTTT
26422678 AGAAAGTTCG
Statistics
Matches: 169, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
28 27 0.16
29 125 0.74
30 17 0.10
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (29 bp):
GAGGGTAAAATGGTAATTTTTAGATGCTC
Found at i:26422581 original size:86 final size:86
Alignment explanation
Indices: 26422455--26422647 Score: 262
Period size: 86 Copynumber: 2.2 Consensus size: 86
26422445 TTGGAAGTTT
* * ** * *
26422455 GAGGGCAAAATGGTGATTTTTTGATGCTCGGTGGTAAAATGATAATTTTTTGATGCTCAAGGGTA
1 GAGGGTAAAATGGT-AATTTTAAATGCTCGGTGGTAAAATGATAATTTTTGGATACTCAAGGGTA
26422520 AAATGGTAATTGTTAGATGCTC
65 AAATGGTAATTGTTAGATGCTC
* *
26422542 GAGGGTAAAATGGTAATTTTAAATGCTCGAG-GGTAAAATGGTAATTTTTGGATACTCGAGGGTA
1 GAGGGTAAAATGGTAATTTTAAATGCTCG-GTGGTAAAATGATAATTTTTGGATACTCAAGGGTA
* *
26422606 AAATGGTAATTTTTAGATGTTC
65 AAATGGTAATTGTTAGATGCTC
*
26422628 AAGGGTAAAATGGTAATTTT
1 GAGGGTAAAATGGTAATTTT
26422648 TAGAAAGTTT
Statistics
Matches: 94, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
86 80 0.85
87 14 0.15
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.35
Consensus pattern (86 bp):
GAGGGTAAAATGGTAATTTTAAATGCTCGGTGGTAAAATGATAATTTTTGGATACTCAAGGGTAA
AATGGTAATTGTTAGATGCTC
Found at i:26422713 original size:59 final size:57
Alignment explanation
Indices: 26422645--26422862 Score: 176
Period size: 58 Copynumber: 3.7 Consensus size: 57
26422635 AAATGGTAAT
* *
26422645 TTTTAGAAAGTTT-AGGGTCAAAATGGTAATTTTAGAAAGTTCGGGGGTTAAAACATGA
1 TTTTGGAAAGTTTAAGGGTAAAAAT-GTAATTTTAGAAAGTTCGGGGGTTAAAA-ATGA
* * * *
26422703 TTGTTGGAAAGTTTAGGGGTAAAAATATAATTTTGGAAAGTTC--GAGTTCAAAAATGTGA
1 TT-TTGGAAAGTTTAAGGGTAAAAATGTAATTTTAGAAAGTTCGGGGGTT-AAAAA--TGA
* * * * *
26422762 TTTTTGAATGTTTGAGGGTAAAAATGAAATTTTAGAAAGCTCGGGGG-T-AAAATGTAA
1 TTTTGGAAAGTTTAAGGGTAAAAATGTAATTTTAGAAAGTTCGGGGGTTAAAAATG--A
* * * *
26422819 TTTTGGAAAAGTTTAAGGGTCAAAATATGATTTTTGCAAAGTTC
1 TTTTGG-AAAGTTTAAGGGTAAAAATGTAATTTTAG-AAAGTTC
26422863 AGGGACCTTT
Statistics
Matches: 125, Mismatches: 24, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
55 2 0.02
57 15 0.12
58 60 0.48
59 37 0.30
60 11 0.09
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (57 bp):
TTTTGGAAAGTTTAAGGGTAAAAATGTAATTTTAGAAAGTTCGGGGGTTAAAAATGA
Found at i:26422715 original size:30 final size:29
Alignment explanation
Indices: 26422671--26422746 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 29
26422661 GTCAAAATGG
* *
26422671 TAATTTTAGAAAGTTCGGGGGTTAAAACA
1 TAATTTTGGAAAGTTCGGGGGTAAAAACA
* ** *
26422700 TGATTGTTGGAAAGTTTAGGGGTAAAAATA
1 TAATT-TTGGAAAGTTCGGGGGTAAAAACA
26422730 TAATTTTGGAAAGTTCG
1 TAATTTTGGAAAGTTCG
26422747 AGTTCAAAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 14 0.38
30 23 0.62
ACGTcount: A:0.36, C:0.04, G:0.26, T:0.34
Consensus pattern (29 bp):
TAATTTTGGAAAGTTCGGGGGTAAAAACA
Found at i:26422738 original size:29 final size:29
Alignment explanation
Indices: 26422645--26422866 Score: 112
Period size: 29 Copynumber: 7.6 Consensus size: 29
26422635 AAATGGTAAT
* * *
26422645 TTTTAGAAAGTTTA-GGGTCAAAATGGTAA
1 TTTTGGAAAGTTTAGGGGTAAAAAT-ATAA
* ** * * *
26422674 TTTTAGAAAGTTCGGGGGTTAAAACATGA
1 TTTTGGAAAGTTTAGGGGTAAAAATATAA
26422703 TTGTTGGAAAGTTTAGGGGTAAAAATATAA
1 TT-TTGGAAAGTTTAGGGGTAAAAATATAA
* * * * *
26422733 TTTTGGAAAG-TTCGAGTTCAAAAATGTGA
1 TTTTGGAAAGTTTAGGGGT-AAAAATATAA
* *
26422762 TTTTTGAATGTTT-GAGGGTAAAAATGA-AA
1 TTTTGGAAAGTTTAG-GGGTAAAAAT-ATAA
* * ** *
26422791 TTTTAGAAAGCTCGGGGGT-AAAATGTAA
1 TTTTGGAAAGTTTAGGGGTAAAAATATAA
* * *
26422819 TTTTGGAAAAGTTTAAGGGTCAAAATATGAT
1 TTTTGG-AAAGTTTAGGGGTAAAAATAT-AA
* *
26422850 TTTTGCAAAGTTCAGGG
1 TTTTGGAAAGTTTAGGG
26422867 ACCTTTTAGG
Statistics
Matches: 144, Mismatches: 38, Indels: 21
0.71 0.19 0.10
Matches are distributed among these distances:
28 17 0.12
29 70 0.49
30 51 0.35
31 6 0.04
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.34
Consensus pattern (29 bp):
TTTTGGAAAGTTTAGGGGTAAAAATATAA
Found at i:26424483 original size:24 final size:23
Alignment explanation
Indices: 26424455--26424529 Score: 64
Period size: 24 Copynumber: 3.1 Consensus size: 23
26424445 TTTTTAGACT
26424455 TTTAATTAAATCTTAAATTTAAAA
1 TTTAATTAAAT-TTAAATTTAAAA
* *
26424479 TTTAAAATAAATTTAAACTTAAAA
1 TTT-AATTAAATTTAAATTTAAAA
26424503 --TAATTTAAAATTTTAAAATTTAAAA
1 TTTAA-TT-AAA-TTT-AAATTTAAAA
26424528 TT
1 TT
26424530 GGGTTTATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 3 0.08
24 17 0.43
25 16 0.40
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (23 bp):
TTTAATTAAATTTAAATTTAAAA
Found at i:26424491 original size:18 final size:18
Alignment explanation
Indices: 26424468--26424521 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
26424458 AATTAAATCT
26424468 TAAATTTAAAATTTAAAA
1 TAAATTTAAAATTTAAAA
*
26424486 TAAATTT-AAACTTAAAA
1 TAAATTTAAAATTTAAAA
26424503 T-AATTTAAAATTTTAAAA
1 TAAATTTAAAA-TTTAAAA
26424521 T
1 T
26424522 TTAAAATTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 5 0.16
17 13 0.41
18 14 0.44
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAATTTAAAATTTAAAA
Found at i:26424502 original size:17 final size:17
Alignment explanation
Indices: 26424468--26424511 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
26424458 AATTAAATCT
*
26424468 TAAATTTAAAATTTAAAA
1 TAAATTT-AAACTTAAAA
26424486 TAAATTTAAACTTAAAA
1 TAAATTTAAACTTAAAA
26424503 T-AATTTAAA
1 TAAATTTAAA
26424512 ATTTTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 8 0.32
17 10 0.40
18 7 0.28
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAATTTAAACTTAAAA
Found at i:26424524 original size:7 final size:7
Alignment explanation
Indices: 26424469--26424529 Score: 56
Period size: 7 Copynumber: 8.7 Consensus size: 7
26424459 ATTAAATCTT
26424469 AAATTTA
1 AAATTTA
26424476 AAATTTA
1 AAATTTA
26424483 AAA--T-
1 AAATTTA
26424487 AAATTTA
1 AAATTTA
* *
26424494 AACTTAAA
1 AAATT-TA
26424502 ATAATTTA
1 A-AATTTA
26424510 AAATTTTA
1 AAA-TTTA
26424518 AAATTTA
1 AAATTTA
26424525 AAATT
1 AAATT
26424530 GGGTTTATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
4 3 0.07
5 1 0.02
6 1 0.02
7 25 0.57
8 11 0.25
9 3 0.07
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATTTA
Found at i:26425007 original size:39 final size:39
Alignment explanation
Indices: 26424963--26425635 Score: 183
Period size: 39 Copynumber: 17.3 Consensus size: 39
26424953 CCCATAATCA
* * * *
26424963 GGGTAACAGATTGACTGATGGTGATCTACCCTAGGCTTG
1 GGGTAAAAGATTGAATGATGGTGATCTGCCCTAGGCTCG
* * *
26425002 GGGTAAAAGATCGAATGATTGTAATCTGCCCTAGGCTCG
1 GGGTAAAAGATTGAATGATGGTGATCTGCCCTAGGCTCG
* * ** * *
26425041 AGGTAAGAGATTGGTTGATGGTGATCTGCTCGAGGCTCG
1 GGGTAAAAGATTGAATGATGGTGATCTGCCCTAGGCTCG
* * *
26425080 GGGTAAAAGA-T-AA-GATGGCTGCAATCTGCCCCATGATCG
1 GGGTAAAAGATTGAATGATGG-TG--ATCTGCCCTAGGCTCG
* * * * * * *
26425119 GGGTAAGAGATTTG-CTAAAGATGATCTGCCCCAAGCTCG
1 GGGTAAAAGA-TTGAATGATGGTGATCTGCCCTAGGCTCG
* * * **
26425158 GGGTAAGAGATCG---GATGGCTGCAATTTG-CCTCAGGCTTA
1 GGGTAAAAGATTGAATGATGG-TG--ATCTGCCCT-AGGCTCG
* * * * * *
26425197 GGGTAAGAGATTTACTAATGATGATCTG-CCTCAAGCTCG
1 GGGTAAAAGATTGAATGATGGTGATCTGCCCT-AGGCTCG
* * * * * *
26425236 GGGTAAGAGATCGGAT-A-GCTGCAATCTG-CCTCATGATCG
1 GGGTAAAAGATTGAATGATGGTG--ATCTGCCCT-AGGCTCG
* * *
26425275 GGGTAAGAGATTTG-CTGATGATGATCTGCCCTAGGCTCG
1 GGGTAAAAGA-TTGAATGATGGTGATCTGCCCTAGGCTCG
* *
26425314 GGGTAAAAGATCTG-ATGGCT-GTAATCTGCCC-AGGCTCG
1 GGGTAAAAGAT-TGAAT-GATGGTGATCTGCCCTAGGCTCG
* * * * * *
26425352 GGGTGAGAGATTTACTGATGATGATCTTCCCTAGGCTCG
1 GGGTAAAAGATTGAATGATGGTGATCTGCCCTAGGCTCG
* * * * * *
26425391 AGGTAAGAGATCG---GATGGCTGCAATCTACCCCAGGCTCA
1 GGGTAAAAGATTGAATGATGG-TG--ATCTGCCCTAGGCTCG
* * * * *
26425430 GGGTAAGAGATTTG-CTGATGATGATCTACCCCAGGCTCG
1 GGGTAAAAGA-TTGAATGATGGTGATCTGCCCTAGGCTCG
* ** * * *
26425469 GGGTAAGAGATCCAATGGCT-GCGATCTG-CCTCAGGCTCA
1 GGGTAAAAGATTGAAT-GATGGTGATCTGCCCT-AGGCTCG
* * * * * *
26425508 AGGTAAGAGATTGGATGACGGTGATCTGCCCCAGGCTCA
1 GGGTAAAAGATTGAATGATGGTGATCTGCCCTAGGCTCG
* * * * *
26425547 AGGTAAAAGATCG---GATGGCTGCAATCTGCCCTATGATTG
1 GGGTAAAAGATTGAATGATGG-TG--ATCTGCCCTAGGCTCG
* * * *
26425586 GGGTAAGAGATTTG-TTGATGATGATCTGCCCCAGGCTCG
1 GGGTAAAAGA-TTGAATGATGGTGATCTGCCCTAGGCTCG
*
26425625 GGGTAAGAGAT
1 GGGTAAAAGAT
26425636 CGGATCTTCA
Statistics
Matches: 474, Mismatches: 118, Indels: 85
0.70 0.17 0.13
Matches are distributed among these distances:
36 15 0.03
37 14 0.03
38 37 0.08
39 367 0.77
40 16 0.03
41 12 0.03
42 13 0.03
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (39 bp):
GGGTAAAAGATTGAATGATGGTGATCTGCCCTAGGCTCG
Done.