Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 80 of 135
Found at i:26791553 original size:20 final size:20
Alignment explanation
Indices: 26791528--26791567 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26791518 TTTGTAAAGG
26791528 CTGTAAAATATAGAAATCAT
1 CTGTAAAATATAGAAATCAT
26791548 CTGTAAAATATAGAAATCAT
1 CTGTAAAATATAGAAATCAT
26791568 TGATTAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (20 bp):
CTGTAAAATATAGAAATCAT
Found at i:26793602 original size:21 final size:21
Alignment explanation
Indices: 26793563--26793609 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
26793553 TTTTTAGTAC
* *
26793563 CGGTAAAAGCATGATTTGTTT
1 CGGTAAAAGCATGACTTGTAT
* *
26793584 CGGTAAAAGCTTTACTTGTAT
1 CGGTAAAAGCATGACTTGTAT
26793605 CGGTA
1 CGGTA
26793610 GAACTGTCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (21 bp):
CGGTAAAAGCATGACTTGTAT
Found at i:26793625 original size:21 final size:21
Alignment explanation
Indices: 26793601--26793654 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
26793591 AGCTTTACTT
26793601 GTATCGGTAGAACTGTCATAG
1 GTATCGGTAGAACTGTCATAG
*
26793622 GTATCGTTAGAACTGTCATAG
1 GTATCGGTAGAACTGTCATAG
26793643 GTATCGGTAGAA
1 GTATCGGTAGAA
26793655 GTTTGCACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.30
Consensus pattern (21 bp):
GTATCGGTAGAACTGTCATAG
Found at i:26795889 original size:21 final size:21
Alignment explanation
Indices: 26795872--26795920 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
26795862 GATTTGTTTT
26795872 GGTAGAAGCTTTACTTGTATC
1 GGTAGAAGCTTTACTTGTATC
26795893 GGTAGAAGCTTTACTTGTATC
1 GGTAGAAGCTTTACTTGTATC
26795914 GGTAGAA
1 GGTAGAA
26795921 CTGTCATAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.35
Consensus pattern (21 bp):
GGTAGAAGCTTTACTTGTATC
Found at i:26797652 original size:22 final size:25
Alignment explanation
Indices: 26797608--26797653 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 25
26797598 CTTCTACATC
26797608 TTAACTTTTTACTCTATTTATTATT
1 TTAACTTTTTACTCTATTTATTATT
26797633 TTAA-TTTTTA-TCT-TTTATTAT
1 TTAACTTTTTACTCTATTTATTAT
26797654 ATGCTCTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 8 0.38
23 3 0.14
24 6 0.29
25 4 0.19
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (25 bp):
TTAACTTTTTACTCTATTTATTATT
Found at i:26800508 original size:20 final size:20
Alignment explanation
Indices: 26800429--26800535 Score: 72
Period size: 20 Copynumber: 5.2 Consensus size: 20
26800419 GACCTGGAGC
* *
26800429 TATTTTGATTTGTTTGAAAAA
1 TATTTTGACTTGTTT-AAAAT
* **
26800450 CATTTTGAAGTG-TTAAAAT
1 TATTTTGACTTGTTTAAAAT
* ** *
26800469 GATTTTGACTTGGCTCAAAT
1 TATTTTGACTTGTTTAAAAT
*
26800489 TATTTTGACATGTTTAAAAT
1 TATTTTGACTTGTTTAAAAT
* *
26800509 CATTTTAACTTGATTTTAAAAT
1 TATTTTGACTTG--TTTAAAAT
26800531 TATTT
1 TATTT
26800536 CAAACTTTTC
Statistics
Matches: 65, Mismatches: 18, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
19 13 0.20
20 31 0.48
21 9 0.14
22 12 0.18
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.49
Consensus pattern (20 bp):
TATTTTGACTTGTTTAAAAT
Found at i:26804947 original size:18 final size:19
Alignment explanation
Indices: 26804910--26804947 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
26804900 TGAGTATTAC
*
26804910 AATACAATTTCTAACCATT
1 AATACAATTTCTAACAATT
*
26804929 AATACACTTT-TAACAATT
1 AATACAATTTCTAACAATT
26804947 A
1 A
26804948 TTCAAATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.37
Consensus pattern (19 bp):
AATACAATTTCTAACAATT
Found at i:26807097 original size:24 final size:23
Alignment explanation
Indices: 26807061--26807107 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
26807051 AATTGTTTTA
* * *
26807061 ATTTTTATCTTTTTTGACAATTT
1 ATTTTTATATTTTTGGAAAATTT
26807084 ATTTTTATAATTTTTGGAAAATTT
1 ATTTTTAT-ATTTTTGGAAAATTT
26807108 TTTGTTTTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.28, C:0.04, G:0.06, T:0.62
Consensus pattern (23 bp):
ATTTTTATATTTTTGGAAAATTT
Found at i:26810636 original size:15 final size:16
Alignment explanation
Indices: 26810606--26810645 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
26810596 GCATAGGAAC
*
26810606 TTAATTTAGTTTTAAT
1 TTAACTTAGTTTTAAT
26810622 TTAACTTAG-TTTAAT
1 TTAACTTAGTTTTAAT
*
26810637 TTAGCTTAG
1 TTAACTTAG
26810646 AATACTTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.30, C:0.05, G:0.10, T:0.55
Consensus pattern (16 bp):
TTAACTTAGTTTTAAT
Found at i:26821671 original size:18 final size:16
Alignment explanation
Indices: 26821648--26821690 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
26821638 TCAGTCATTT
26821648 GAAAAAGAAACAAAATGA
1 GAAAAAGAAACAAAA--A
* *
26821666 GAAAAAGGAAGAAAAA
1 GAAAAAGAAACAAAAA
26821682 GAAAAAGAA
1 GAAAAAGAA
26821691 TTTTTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 9 0.41
18 13 0.59
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.02
Consensus pattern (16 bp):
GAAAAAGAAACAAAAA
Found at i:26834235 original size:20 final size:20
Alignment explanation
Indices: 26834189--26834236 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
26834179 TCGCCAAGCT
26834189 GTCGAAACATTTTTTAAAAA
1 GTCGAAACATTTTTTAAAAA
* *
26834209 GTCCGAAACTTTTATTTTAAAA
1 GT-CGAAACATTT-TTTAAAAA
26834231 -TCGAAA
1 GTCGAAA
26834237 ACGGAGTGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 7 0.29
21 10 0.42
22 7 0.29
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (20 bp):
GTCGAAACATTTTTTAAAAA
Found at i:26835042 original size:25 final size:26
Alignment explanation
Indices: 26835008--26835062 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 26
26834998 ATTGAAAAAT
26835008 AAAACAAAAATAGTGATTAAATTTAA
1 AAAACAAAAATAGTGATTAAATTTAA
26835034 AAAAC-AAAATAGTGATTAAATTTAA
1 AAAACAAAAATAGTGATTAAATTTAA
26835059 AAAA
1 AAAA
26835063 ATCAAAAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 24 0.83
26 5 0.17
ACGTcount: A:0.64, C:0.04, G:0.07, T:0.25
Consensus pattern (26 bp):
AAAACAAAAATAGTGATTAAATTTAA
Found at i:26835463 original size:2 final size:2
Alignment explanation
Indices: 26835456--26835485 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
26835446 AATAAATAGA
26835456 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26835486 ACAGATACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26844448 original size:27 final size:27
Alignment explanation
Indices: 26844418--26844476 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
26844408 TTCATAACTC
*
26844418 AACTAGCAAACCCCAGCTAGCCAAATA
1 AACTAGCAAACCCCAGCTAGCCAAACA
* * * *
26844445 AACTGGCAAACCCTATCTCGCCAAACA
1 AACTAGCAAACCCCAGCTAGCCAAACA
26844472 AACTA
1 AACTA
26844477 ATAAACCCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.42, C:0.34, G:0.10, T:0.14
Consensus pattern (27 bp):
AACTAGCAAACCCCAGCTAGCCAAACA
Found at i:26844771 original size:34 final size:34
Alignment explanation
Indices: 26844732--26844800 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
26844722 ATCGATTGGA
26844732 TAGTTTTTGGAGATCACACTATCAGTCAACTCTT
1 TAGTTTTTGGAGATCACACTATCAGTCAACTCTT
26844766 TAGTTTTTGGAGATCACACTATCAGTCAACTCTT
1 TAGTTTTTGGAGATCACACTATCAGTCAACTCTT
26844800 T
1 T
26844801 CGATAGTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.39
Consensus pattern (34 bp):
TAGTTTTTGGAGATCACACTATCAGTCAACTCTT
Found at i:26857603 original size:12 final size:13
Alignment explanation
Indices: 26857568--26857603 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
26857558 AGCACATGAC
26857568 AAAAA-CAG-AAT
1 AAAAAGCAGAAAT
26857579 AAAAAGCAGAAAT
1 AAAAAGCAGAAAT
26857592 AAAAAGCA-AAAT
1 AAAAAGCAGAAAT
26857604 TTTTTATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.22
12 7 0.30
13 11 0.48
ACGTcount: A:0.72, C:0.08, G:0.11, T:0.08
Consensus pattern (13 bp):
AAAAAGCAGAAAT
Found at i:26871930 original size:24 final size:25
Alignment explanation
Indices: 26871890--26871940 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
26871880 TGTTCCTAAG
*
26871890 CCCAAATCCTATTAAAACCAATTAA
1 CCCAAACCCTATTAAAACCAATTAA
*
26871915 CCCAAACCCT-TTAAAACCCATTAA
1 CCCAAACCCTATTAAAACCAATTAA
26871939 CC
1 CC
26871941 TTTTTTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 15 0.62
25 9 0.38
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (25 bp):
CCCAAACCCTATTAAAACCAATTAA
Found at i:26871964 original size:20 final size:21
Alignment explanation
Indices: 26871924--26871964 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
26871914 ACCCAAACCC
26871924 TTTAAAACCCATTAACCTTTTT
1 TTTAAAACCCA-TAACCTTTTT
*
26871946 TTTAAAACCCA-AGCCTTTT
1 TTTAAAACCCATAACCTTTT
26871965 AACCCTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.32, C:0.24, G:0.02, T:0.41
Consensus pattern (21 bp):
TTTAAAACCCATAACCTTTTT
Found at i:26872091 original size:20 final size:20
Alignment explanation
Indices: 26872066--26872124 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
26872056 CCATTAACCA
26872066 TTGATCGTTGA-CTGTTGACT
1 TTGATCGTTGATC-GTTGACT
26872086 TTGATCGTTGATCGTTGACT
1 TTGATCGTTGATCGTTGACT
*
26872106 TTGATCGCTGATCGTTGAC
1 TTGATCGTTGATCGTTGAC
26872125 CGTTGACTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
20 36 0.97
21 1 0.03
ACGTcount: A:0.15, C:0.17, G:0.25, T:0.42
Consensus pattern (20 bp):
TTGATCGTTGATCGTTGACT
Found at i:26872101 original size:27 final size:27
Alignment explanation
Indices: 26872066--26872134 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
26872056 CCATTAACCA
**
26872066 TTGATCGTTGACTGTTGA-CTTTGATCG
1 TTGATCGTTGACT-TTGATCGCTGATCG
26872093 TTGATCGTTGACTTTGATCGCTGATCG
1 TTGATCGTTGACTTTGATCGCTGATCG
*
26872120 TTGACCGTTGACTTT
1 TTGATCGTTGACTTT
26872135 TTTGAAAAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 4 0.11
27 34 0.89
ACGTcount: A:0.14, C:0.17, G:0.25, T:0.43
Consensus pattern (27 bp):
TTGATCGTTGACTTTGATCGCTGATCG
Found at i:26872131 original size:7 final size:7
Alignment explanation
Indices: 26872066--26872130 Score: 64
Period size: 7 Copynumber: 9.6 Consensus size: 7
26872056 CCATTAACCA
26872066 TTGATCG
1 TTGATCG
26872073 TTGA-CTG
1 TTGATC-G
*
26872080 TTGA-CT
1 TTGATCG
26872086 TTGATCG
1 TTGATCG
26872093 TTGATCG
1 TTGATCG
*
26872100 TTGA-CT
1 TTGATCG
26872106 TTGATCG
1 TTGATCG
*
26872113 CTGATCG
1 TTGATCG
*
26872120 TTGACCG
1 TTGATCG
26872127 TTGA
1 TTGA
26872131 CTTTTTTGAA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
6 10 0.21
7 38 0.79
ACGTcount: A:0.15, C:0.17, G:0.26, T:0.42
Consensus pattern (7 bp):
TTGATCG
Found at i:26877049 original size:21 final size:21
Alignment explanation
Indices: 26877025--26877064 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26877015 TATTGATCAA
*
26877025 GAGAGGGAAAAAGAAAAGAGT
1 GAGAAGGAAAAAGAAAAGAGT
*
26877046 GAGAATGAAAAAGAAAAGA
1 GAGAAGGAAAAAGAAAAGA
26877065 AAATTGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.05
Consensus pattern (21 bp):
GAGAAGGAAAAAGAAAAGAGT
Found at i:26885805 original size:17 final size:18
Alignment explanation
Indices: 26885783--26885822 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26885773 AGATTGCATA
26885783 CATTTT-TATTGTCATCG
1 CATTTTATATTGTCATCG
* *
26885800 CATTTTATTTTGTCATTG
1 CATTTTATATTGTCATCG
26885818 CATTT
1 CATTT
26885823 CTTTTGTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.17, C:0.15, G:0.10, T:0.57
Consensus pattern (18 bp):
CATTTTATATTGTCATCG
Found at i:26896705 original size:3 final size:3
Alignment explanation
Indices: 26896697--26896753 Score: 64
Period size: 3 Copynumber: 19.0 Consensus size: 3
26896687 TGGGGCAACA
* *
26896697 TCT TCT TCT TTT TCT TCCT TC- TCT TCT TTT TCT TCT TCT T-T TCTT
1 TCT TCT TCT TCT TCT T-CT TCT TCT TCT TCT TCT TCT TCT TCT TC-T
26896742 TCT TCT TCT TCT
1 TCT TCT TCT TCT
26896754 GCCTCAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
2 4 0.09
3 36 0.78
4 6 0.13
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:26896723 original size:18 final size:17
Alignment explanation
Indices: 26896700--26896753 Score: 81
Period size: 18 Copynumber: 3.1 Consensus size: 17
26896690 GGCAACATCT
26896700 TCTTCTTTTTCTTCCTTC
1 TCTTCTTTTTCTT-CTTC
26896718 TCTTCTTTTTCTTCTTC
1 TCTTCTTTTTCTTCTTC
*
26896735 TTTTCTTTCTTCTTCTTC
1 TCTTCTTT-TTCTTCTTC
26896753 T
1 T
26896754 GCCTCAATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
17 11 0.32
18 23 0.68
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (17 bp):
TCTTCTTTTTCTTCTTC
Found at i:26908044 original size:9 final size:9
Alignment explanation
Indices: 26908032--26908065 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
26908022 AAAAATGAGA
26908032 AAAGAAGAG
1 AAAGAAGAG
*
26908041 AAAGAAGAA
1 AAAGAAGAG
26908050 AAAGAAGAG
1 AAAGAAGAG
*
26908059 GAAGAAG
1 AAAGAAG
26908066 CCAGAGCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (9 bp):
AAAGAAGAG
Found at i:26908054 original size:18 final size:18
Alignment explanation
Indices: 26908031--26908065 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26908021 AAAAAATGAG
26908031 AAAAGAAGAGAAAGAAGA
1 AAAAGAAGAGAAAGAAGA
*
26908049 AAAAGAAGAGGAAGAAG
1 AAAAGAAGAGAAAGAAG
26908066 CCAGAGCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (18 bp):
AAAAGAAGAGAAAGAAGA
Found at i:26909116 original size:17 final size:17
Alignment explanation
Indices: 26909091--26909131 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
26909081 TCAGTTAGAT
*
26909091 AGAAAAAAAGAAAAAGAA
1 AGAAAAAAGGAAAAAG-A
*
26909109 AGAAAAAAGGGAAAAGA
1 AGAAAAAAGGAAAAAGA
26909126 AGAAAA
1 AGAAAA
26909132 TATATATATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (17 bp):
AGAAAAAAGGAAAAAGA
Found at i:26911688 original size:26 final size:25
Alignment explanation
Indices: 26911659--26911708 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
26911649 GTATAAAACA
* *
26911659 TTAACAATTTAAAATAAATTAAAAAG
1 TTAACAAATT-AAATAAATCAAAAAG
*
26911685 TTAATAAATTAAATAAATCAAAAA
1 TTAACAAATTAAATAAATCAAAAA
26911709 TTAGAAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (25 bp):
TTAACAAATTAAATAAATCAAAAAG
Found at i:26911709 original size:16 final size:15
Alignment explanation
Indices: 26911674--26911725 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
26911664 AATTTAAAAT
* *
26911674 AAATTAAAAAGTTAAT
1 AAATTAAAAA-ATAAA
*
26911690 AAATTAAATAAATCAA
1 AAATTAAA-AAATAAA
*
26911706 AAATTAGAAAATAAA
1 AAATTAAAAAATAAA
26911721 AAATT
1 AAATT
26911726 CTTACCACCT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 11 0.37
16 17 0.57
17 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (15 bp):
AAATTAAAAAATAAA
Found at i:26912149 original size:20 final size:20
Alignment explanation
Indices: 26912121--26912161 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26912111 GCACTGATAG
*
26912121 GAGACGCGTTGGGAGCTTGT
1 GAGACGCGTCGGGAGCTTGT
* *
26912141 GAGAGGCGTCGGGGGCTTGT
1 GAGACGCGTCGGGAGCTTGT
26912161 G
1 G
26912162 GTTGATGGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.15, G:0.51, T:0.22
Consensus pattern (20 bp):
GAGACGCGTCGGGAGCTTGT
Found at i:26931145 original size:15 final size:15
Alignment explanation
Indices: 26931120--26931154 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
26931110 ATAGAATTTT
*
26931120 TAAAA-TGAAACAAG
1 TAAAAGTGAAACAAA
26931134 TAAAAGTGAAACAAA
1 TAAAAGTGAAACAAA
26931149 TAAAAG
1 TAAAAG
26931155 AAAATGTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.66, C:0.06, G:0.14, T:0.14
Consensus pattern (15 bp):
TAAAAGTGAAACAAA
Found at i:26941762 original size:12 final size:12
Alignment explanation
Indices: 26941747--26941772 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26941737 AATTAAAGAA
26941747 ATAATAGCATTC
1 ATAATAGCATTC
26941759 ATAATAGCATTC
1 ATAATAGCATTC
26941771 AT
1 AT
26941773 CATGATAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (12 bp):
ATAATAGCATTC
Found at i:26960382 original size:43 final size:43
Alignment explanation
Indices: 26960329--26960431 Score: 163
Period size: 43 Copynumber: 2.4 Consensus size: 43
26960319 TAGTGGGTGA
* *
26960329 TTTCCACGTAGCTTCCTTCTTTGTCATTTTTTGGAA-GTGGTTT
1 TTTCCACGTAGCTTCCTTCTTTGTCATTTCTT-GAATGTGGCTT
*
26960372 TTTCCACGTAGCTTCCTTCTTTGTCGTTTCTTGAATGTGGCTT
1 TTTCCACGTAGCTTCCTTCTTTGTCATTTCTTGAATGTGGCTT
26960415 TTTCCACGTAGCTTCCT
1 TTTCCACGTAGCTTCCT
26960432 CTACCTTGTG
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
42 3 0.05
43 53 0.95
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (43 bp):
TTTCCACGTAGCTTCCTTCTTTGTCATTTCTTGAATGTGGCTT
Found at i:26963096 original size:15 final size:15
Alignment explanation
Indices: 26963068--26963109 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
26963058 AGAAAGTGGA
26963068 CTATTAAT-TTTTTT
1 CTATTAATCTTTTTT
26963082 CTATTAATCTTTTTT
1 CTATTAATCTTTTTT
*
26963097 CTAATAATTCTTT
1 CTATTAA-TCTTT
26963110 AATTTATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 8 0.32
15 12 0.48
16 5 0.20
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (15 bp):
CTATTAATCTTTTTT
Found at i:26964838 original size:18 final size:18
Alignment explanation
Indices: 26964815--26964849 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26964805 ATATAATATT
* *
26964815 TCTTCAGGATTTATTTCC
1 TCTTCAAGATATATTTCC
26964833 TCTTCAAGATATATTTC
1 TCTTCAAGATATATTTC
26964850 TAAATCTTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.20, G:0.09, T:0.49
Consensus pattern (18 bp):
TCTTCAAGATATATTTCC
Found at i:26968987 original size:17 final size:18
Alignment explanation
Indices: 26968965--26968998 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26968955 CTATAACAAT
*
26968965 ATAAACATG-AATTAAAA
1 ATAAACAAGCAATTAAAA
26968982 ATAAACAAGCAATTAAA
1 ATAAACAAGCAATTAAA
26968999 TACAATCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.65, C:0.09, G:0.06, T:0.21
Consensus pattern (18 bp):
ATAAACAAGCAATTAAAA
Found at i:26977455 original size:5 final size:5
Alignment explanation
Indices: 26977445--26977469 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26977435 TAAGATTAGG
26977445 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
26977470 CACTATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:27004278 original size:24 final size:24
Alignment explanation
Indices: 27004247--27004345 Score: 146
Period size: 24 Copynumber: 4.1 Consensus size: 24
27004237 ACTAACAACT
27004247 TTAGCTCTTACGAGCCTAGAATGG
1 TTAGCTCTTACGAGCCTAGAATGG
* * *
27004271 TTAGCTCTTATGAGCCCAAAATGG
1 TTAGCTCTTACGAGCCTAGAATGG
*
27004295 TTAGCTCTTATGAGCCTAGAATGG
1 TTAGCTCTTACGAGCCTAGAATGG
27004319 TTAGCTCTTACGAGCCT-GAAATGG
1 TTAGCTCTTACGAGCCTAG-AATGG
27004343 TTA
1 TTA
27004346 ACCAGTTTAC
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
23 1 0.01
24 67 0.99
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31
Consensus pattern (24 bp):
TTAGCTCTTACGAGCCTAGAATGG
Found at i:27004301 original size:48 final size:48
Alignment explanation
Indices: 27004247--27004345 Score: 162
Period size: 48 Copynumber: 2.1 Consensus size: 48
27004237 ACTAACAACT
*
27004247 TTAGCTCTTACGAGCCTAGAATGGTTAGCTCTTATGAGCCCAAAATGG
1 TTAGCTCTTACGAGCCTAGAATGGTTAGCTCTTACGAGCCCAAAATGG
* **
27004295 TTAGCTCTTATGAGCCTAGAATGGTTAGCTCTTACGAGCCTGAAATGG
1 TTAGCTCTTACGAGCCTAGAATGGTTAGCTCTTACGAGCCCAAAATGG
27004343 TTA
1 TTA
27004346 ACCAGTTTAC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31
Consensus pattern (48 bp):
TTAGCTCTTACGAGCCTAGAATGGTTAGCTCTTACGAGCCCAAAATGG
Found at i:27010541 original size:15 final size:15
Alignment explanation
Indices: 27010521--27010554 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
27010511 CAGTTCCTCT
27010521 ACCTCGCTAGTGACA
1 ACCTCGCTAGTGACA
*
27010536 ACCTCGCTGGTGACA
1 ACCTCGCTAGTGACA
27010551 ACCT
1 ACCT
27010555 TAGCCTACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.35, G:0.21, T:0.21
Consensus pattern (15 bp):
ACCTCGCTAGTGACA
Found at i:27020906 original size:30 final size:30
Alignment explanation
Indices: 27020859--27020997 Score: 124
Period size: 30 Copynumber: 4.6 Consensus size: 30
27020849 CATTAAAACC
* *
27020859 GGGTCAAATTTTGAATTTTTGGAAAGTTC-G
1 GGGTCAAA-TTAGAATTTTTGGAAAGTTCAA
*
27020889 GTGGTCACATTCA-AATTTTTGGAAAGTTCAA
1 G-GGTCAAATT-AGAATTTTTGGAAAGTTCAA
27020920 GGGTCAAATTAGAATTTTTGGAAAGTTC-A
1 GGGTCAAATTAGAATTTTTGGAAAGTTCAA
* * * *
27020949 GGGATTAAATTGGAATTTTTGGACAA-TTTAT
1 GGG-TCAAATTAGAATTTTTGGA-AAGTTCAA
* *
27020980 GGGTCAAAATATAATTTT
1 GGGTCAAATTAGAATTTT
27020998 ATAATAAAGC
Statistics
Matches: 90, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
29 5 0.06
30 73 0.81
31 12 0.13
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.38
Consensus pattern (30 bp):
GGGTCAAATTAGAATTTTTGGAAAGTTCAA
Found at i:27020966 original size:60 final size:60
Alignment explanation
Indices: 27020859--27020997 Score: 147
Period size: 60 Copynumber: 2.3 Consensus size: 60
27020849 CATTAAAACC
* * *
27020859 GGGTCAAATTTTGAATTTTTGGAAAGTTCGGTGGTCACATTCAAATTTTTGGA-AAGTTCAA
1 GGGTCAAA-TTAGAATTTTTGGAAAGTTCGGTGATCAAATTCAAATTTTTGGACAA-TTCAA
* ** * *
27020920 GGGTCAAATTAGAATTTTTGGAAAGTTCAGG-GATTAAATTGGAATTTTTGGACAATTTAT
1 GGGTCAAATTAGAATTTTTGGAAAGTTC-GGTGATCAAATTCAAATTTTTGGACAATTCAA
* *
27020980 GGGTCAAAATATAATTTT
1 GGGTCAAATTAGAATTTT
27020998 ATAATAAAGC
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
60 54 0.82
61 12 0.18
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.38
Consensus pattern (60 bp):
GGGTCAAATTAGAATTTTTGGAAAGTTCGGTGATCAAATTCAAATTTTTGGACAATTCAA
Found at i:27025430 original size:21 final size:22
Alignment explanation
Indices: 27025390--27025432 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
27025380 AAATAATAAC
27025390 GAAACGAAATAACTAAAACCTA
1 GAAACGAAATAACTAAAACCTA
27025412 GAAACGAAATAAC-AAAACCTA
1 GAAACGAAATAACTAAAACCTA
27025433 AATTAAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.60, C:0.19, G:0.09, T:0.12
Consensus pattern (22 bp):
GAAACGAAATAACTAAAACCTA
Found at i:27025640 original size:21 final size:22
Alignment explanation
Indices: 27025602--27025642 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
27025592 TTTTTGTGGC
*
27025602 CAGGAGTCGATGTAGCGACACT
1 CAGGAGTCCATGTAGCGACACT
*
27025624 CAGGA-TCCATGTTGCGACA
1 CAGGAGTCCATGTAGCGACA
27025643 TAGCCATCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (22 bp):
CAGGAGTCCATGTAGCGACACT
Found at i:27030954 original size:22 final size:23
Alignment explanation
Indices: 27030911--27030954 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
27030901 AAATAATAAC
*
27030911 GAAATGAAATAACTAAAACCTAG
1 GAAAAGAAATAACTAAAACCTAG
27030934 GAAAAGAAATAACT-AAACCTA
1 GAAAAGAAATAACTAAAACCTA
27030955 AATTACAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.59, C:0.14, G:0.11, T:0.16
Consensus pattern (23 bp):
GAAAAGAAATAACTAAAACCTAG
Found at i:27031243 original size:76 final size:76
Alignment explanation
Indices: 27031117--27031269 Score: 281
Period size: 76 Copynumber: 2.0 Consensus size: 76
27031107 CTTACTCGAT
27031117 GTATTTCCATGGCCAAGAGTCGATGTCACGACATAATCGATAGTGTACTCCATGAGTATATTTT-
1 GTATTTCCATGGCCAAGAGTCGATGTCACGACATAATCGATAGTGTACTCCATGAGTATATTTTC
27031181 TCAGGGTTTGTC
66 T-AGGGTTTGTC
*
27031193 GTATTTCCATGGCCAAGAGTCGATGTCACGATATAATCGATAGTGTACTCCATGAGTATATTTTC
1 GTATTTCCATGGCCAAGAGTCGATGTCACGACATAATCGATAGTGTACTCCATGAGTATATTTTC
27031258 TAGGGTTTGTC
66 TAGGGTTTGTC
27031269 G
1 G
27031270 CGATAAAGAA
Statistics
Matches: 75, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
76 74 0.99
77 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (76 bp):
GTATTTCCATGGCCAAGAGTCGATGTCACGACATAATCGATAGTGTACTCCATGAGTATATTTTC
TAGGGTTTGTC
Found at i:27031452 original size:15 final size:15
Alignment explanation
Indices: 27031428--27031567 Score: 54
Period size: 15 Copynumber: 9.3 Consensus size: 15
27031418 GCTTGGAAGA
*
27031428 TGCGAGCACTAGTGT
1 TGCGAACACTAGTGT
27031443 TGCGAACACTCA-TGT
1 TGCGAACACT-AGTGT
* * * *
27031458 TGCGAACATTGGAGC
1 TGCGAACACTAGTGT
* * *
27031473 TACAAACA-TTGATGT
1 TGCGAACACTAG-TGT
*
27031488 TGTGAACACTAGTGT
1 TGCGAACACTAGTGT
27031503 TGC-AAGCACTCA-TGT
1 TGCGAA-CACT-AGTGT
* * * *
27031518 TGTGAACACTGGAGC
1 TGCGAACACTAGTGT
* * *
27031533 TGTGAGCACTAATGT
1 TGCGAACACTAGTGT
* *
27031548 TGTGAACACTTGTGT
1 TGCGAACACTAGTGT
27031563 TGCGA
1 TGCGA
27031568 GCATGGATGA
Statistics
Matches: 89, Mismatches: 28, Indels: 16
0.67 0.21 0.12
Matches are distributed among these distances:
14 4 0.04
15 79 0.89
16 6 0.07
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (15 bp):
TGCGAACACTAGTGT
Found at i:27031518 original size:30 final size:30
Alignment explanation
Indices: 27031434--27031570 Score: 105
Period size: 30 Copynumber: 4.6 Consensus size: 30
27031424 AAGATGCGAG
*
27031434 CACTAGTGTTGCGAA-CACTCATGTTGCGAA
1 CACTAGTGTTGC-AAGCACTCATGTTGTGAA
* * * * * * * *
27031464 CATTGGAGCTACAAACATTGATGTTGTGAA
1 CACTAGTGTTGCAAGCACTCATGTTGTGAA
27031494 CACTAGTGTTGCAAGCACTCATGTTGTGAA
1 CACTAGTGTTGCAAGCACTCATGTTGTGAA
* * * ** *
27031524 CACTGGAGCTGTGAGCACTAATGTTGTGAA
1 CACTAGTGTTGCAAGCACTCATGTTGTGAA
* *
27031554 CACTTGTGTTGCGAGCA
1 CACTAGTGTTGCAAGCA
27031571 TGGATGAAGG
Statistics
Matches: 80, Mismatches: 26, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
29 2 0.03
30 78 0.98
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (30 bp):
CACTAGTGTTGCAAGCACTCATGTTGTGAA
Found at i:27031531 original size:60 final size:60
Alignment explanation
Indices: 27031434--27031570 Score: 168
Period size: 60 Copynumber: 2.3 Consensus size: 60
27031424 AAGATGCGAG
* * *
27031434 CACTAGTGTTGCGAA-CACTCATGTTGCGAACATTGGAGCTACAAACATTGATGTTGTGAA
1 CACTAGTGTTGC-AAGCACTCATGTTGCGAACACTGGAGCTACAAACACTAATGTTGTGAA
* *** *
27031494 CACTAGTGTTGCAAGCACTCATGTTGTGAACACTGGAGCTGTGAGCACTAATGTTGTGAA
1 CACTAGTGTTGCAAGCACTCATGTTGCGAACACTGGAGCTACAAACACTAATGTTGTGAA
* *
27031554 CACTTGTGTTGCGAGCA
1 CACTAGTGTTGCAAGCA
27031571 TGGATGAAGG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
59 2 0.03
60 64 0.97
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (60 bp):
CACTAGTGTTGCAAGCACTCATGTTGCGAACACTGGAGCTACAAACACTAATGTTGTGAA
Found at i:27034960 original size:7 final size:7
Alignment explanation
Indices: 27034950--27034975 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
27034940 GAGAATGAAA
27034950 GATGATG
1 GATGATG
27034957 GATGATG
1 GATGATG
27034964 GATGATG
1 GATGATG
27034971 GATGA
1 GATGA
27034976 GTAAGGGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.42, T:0.27
Consensus pattern (7 bp):
GATGATG
Found at i:27036961 original size:10 final size:10
Alignment explanation
Indices: 27036948--27037012 Score: 53
Period size: 10 Copynumber: 6.4 Consensus size: 10
27036938 TTCAATAAAT
27036948 TAAAATTATA
1 TAAAATTATA
27036958 TAAAATTAT-
1 TAAAATTATA
*
27036967 TAAATATTAAA
1 TAAA-ATTATA
*
27036978 TTAAAATTTTA
1 -TAAAATTATA
*
27036989 TAAATATTTTA
1 TAAA-ATTATA
*
27037000 -AAAATGATA
1 TAAAATTATA
27037009 TAAA
1 TAAA
27037013 TAAATCTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
9 8 0.18
10 23 0.51
11 10 0.22
12 4 0.09
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (10 bp):
TAAAATTATA
Found at i:27036978 original size:31 final size:31
Alignment explanation
Indices: 27036943--27037001 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
27036933 AAAATTTCAA
27036943 TAAATTAAAATTATATAAA-ATTATTAAATAT
1 TAAATTAAAATTATATAAATATT-TTAAATAT
*
27036974 TAAATTAAAATTTTATAAATATTTTAAA
1 TAAATTAAAATTATATAAATATTTTAAA
27037002 AATGATATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 23 0.88
32 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (31 bp):
TAAATTAAAATTATATAAATATTTTAAATAT
Found at i:27036992 original size:15 final size:15
Alignment explanation
Indices: 27036942--27036993 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
27036932 AAAAATTTCA
27036942 ATAAATTAAAATTAT
1 ATAAATTAAAATTAT
27036957 ATAAAATTATTAAA-TAT
1 AT-AAATTA--AAATTAT
*
27036974 -TAAATTAAAATTTT
1 ATAAATTAAAATTAT
27036988 ATAAAT
1 ATAAAT
27036994 ATTTTAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
13 3 0.10
14 2 0.06
15 13 0.42
16 7 0.23
17 3 0.10
18 3 0.10
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAAATTAAAATTAT
Found at i:27058584 original size:95 final size:95
Alignment explanation
Indices: 27058470--27058642 Score: 346
Period size: 95 Copynumber: 1.8 Consensus size: 95
27058460 TATGCATATA
27058470 TCGGTAGAAGTACAGGGTAGGAGAGAGGTTGTTCAGTGACTTGGGATGTATCGGTAGTTGAAATG
1 TCGGTAGAAGTACAGGGTAGGAGAGAGGTTGTTCAGTGACTTGGGATGTATCGGTAGTTGAAATG
27058535 TAAGTTTTGGTAGTTATGTGTTTAGACTTT
66 TAAGTTTTGGTAGTTATGTGTTTAGACTTT
27058565 TCGGTAGAAGTACAGGGTAGGAGAGAGGTTGTTCAGTGACTTGGGATGTATCGGTAGTTGAAATG
1 TCGGTAGAAGTACAGGGTAGGAGAGAGGTTGTTCAGTGACTTGGGATGTATCGGTAGTTGAAATG
27058630 TAAGTTTTGGTAG
66 TAAGTTTTGGTAG
27058643 ATTGTATACT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 78 1.00
ACGTcount: A:0.25, C:0.06, G:0.35, T:0.34
Consensus pattern (95 bp):
TCGGTAGAAGTACAGGGTAGGAGAGAGGTTGTTCAGTGACTTGGGATGTATCGGTAGTTGAAATG
TAAGTTTTGGTAGTTATGTGTTTAGACTTT
Found at i:27058746 original size:21 final size:21
Alignment explanation
Indices: 27058722--27058777 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
27058712 GATGCATGAT
27058722 TTGTATCGGTAGAAGTTATAC
1 TTGTATCGGTAGAAGTTATAC
27058743 TTGTATCGGTAGAAGTTATAC
1 TTGTATCGGTAGAAGTTATAC
27058764 TTGTATCGGTAGAA
1 TTGTATCGGTAGAA
27058778 CTAGCACAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.29, C:0.09, G:0.25, T:0.38
Consensus pattern (21 bp):
TTGTATCGGTAGAAGTTATAC
Found at i:27062055 original size:27 final size:27
Alignment explanation
Indices: 27062024--27062079 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
27062014 CTCCATAGGA
*
27062024 TCTTCCTT-AGGATCTTCTTCTTCTTCT
1 TCTT-CTTCAGGATCTTCGTCTTCTTCT
*
27062051 TCTTCTTCAGGATTTTCGTCTTCTTCT
1 TCTTCTTCAGGATCTTCGTCTTCTTCT
27062078 TC
1 TC
27062080 AACTTGCTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.07, C:0.29, G:0.09, T:0.55
Consensus pattern (27 bp):
TCTTCTTCAGGATCTTCGTCTTCTTCT
Found at i:27062989 original size:26 final size:25
Alignment explanation
Indices: 27062960--27063009 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
27062950 GTATAAAATA
*
27062960 TTAACAATTTAAAATAAATTAAAAAG
1 TTAACAAATT-AAATAAATTAAAAAG
*
27062986 TTAATAAATTAAATAAATTAAAAA
1 TTAACAAATTAAATAAATTAAAAA
27063010 TCAGAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (25 bp):
TTAACAAATTAAATAAATTAAAAAG
Found at i:27063002 original size:9 final size:9
Alignment explanation
Indices: 27062971--27063007 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
27062961 TAACAATTTA
27062971 AAATAAATT
1 AAATAAATT
*
27062980 AAA-AAGTT
1 AAATAAATT
27062988 -AATAAATT
1 AAATAAATT
27062996 AAATAAATT
1 AAATAAATT
27063005 AAA
1 AAA
27063008 AATCAGAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
7 2 0.08
8 8 0.33
9 14 0.58
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (9 bp):
AAATAAATT
Found at i:27063010 original size:16 final size:16
Alignment explanation
Indices: 27062972--27063010 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
27062962 AACAATTTAA
*
27062972 AATAAATTAAAAAGTT
1 AATAAATTAAAAAATT
27062988 AATAAATTAAATAAATT
1 AATAAATTAAA-AAATT
27063005 AA-AAAT
1 AATAAAT
27063011 CAGAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (16 bp):
AATAAATTAAAAAATT
Found at i:27063024 original size:25 final size:25
Alignment explanation
Indices: 27062969--27063022 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
27062959 ATTAACAATT
*
27062969 TAAAATAAATTAAAAAGTTAATAAA
1 TAAAATAAATTAAAAAGTCAATAAA
*
27062994 TTAAATAAATTAAAAA-TCAGA-AAA
1 TAAAATAAATTAAAAAGTCA-ATAAA
27063018 TAAAA
1 TAAAA
27063023 ATTTCTTACC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.26
Consensus pattern (25 bp):
TAAAATAAATTAAAAAGTCAATAAA
Found at i:27065407 original size:21 final size:21
Alignment explanation
Indices: 27065383--27065435 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
27065373 GAGTTTGTTA
27065383 TATCGGTAGAAGTAATAATTG
1 TATCGGTAGAAGTAATAATTG
* * *
27065404 TATCGGTAGTAGTCATACTTG
1 TATCGGTAGAAGTAATAATTG
27065425 TATCGGTAGAA
1 TATCGGTAGAA
27065436 CCTTCCCAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.34
Consensus pattern (21 bp):
TATCGGTAGAAGTAATAATTG
Found at i:27066104 original size:12 final size:12
Alignment explanation
Indices: 27066075--27066169 Score: 100
Period size: 12 Copynumber: 7.9 Consensus size: 12
27066065 ATAACAACAA
* *
27066075 AACAATAAAATT
1 AACAACAAAAAT
* *
27066087 AGCAACAAAAAC
1 AACAACAAAAAT
27066099 AACAACAAAAAT
1 AACAACAAAAAT
*
27066111 AACAGCAAAAAT
1 AACAACAAAAAT
* *
27066123 AGCAACAAAAAC
1 AACAACAAAAAT
27066135 AACAACAAAAAT
1 AACAACAAAAAT
*
27066147 AACAGCAAAAAT
1 AACAACAAAAAT
* *
27066159 AGCACCAAAAA
1 AACAACAAAAA
27066170 AGTAAAAAAA
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 68 1.00
ACGTcount: A:0.68, C:0.19, G:0.05, T:0.07
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:27066131 original size:36 final size:36
Alignment explanation
Indices: 27066081--27066169 Score: 160
Period size: 36 Copynumber: 2.5 Consensus size: 36
27066071 ACAAAACAAT
*
27066081 AAAATTAGCAACAAAAACAACAACAAAAATAACAGC
1 AAAAATAGCAACAAAAACAACAACAAAAATAACAGC
27066117 AAAAATAGCAACAAAAACAACAACAAAAATAACAGC
1 AAAAATAGCAACAAAAACAACAACAAAAATAACAGC
*
27066153 AAAAATAGCACCAAAAA
1 AAAAATAGCAACAAAAA
27066170 AGTAAAAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.69, C:0.19, G:0.06, T:0.07
Consensus pattern (36 bp):
AAAAATAGCAACAAAAACAACAACAAAAATAACAGC
Found at i:27067795 original size:80 final size:78
Alignment explanation
Indices: 27067693--27067855 Score: 263
Period size: 80 Copynumber: 2.1 Consensus size: 78
27067683 ACAAGCACTA
*
27067693 ATTTCATTTTAACTCTTGTAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATATGATGTAATT
1 ATTTCATTTTAACTCTTATAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATATGATGTAATT
*
27067758 GAAAAGGCTTGAC
66 GAAAAGGCATGAC
* **
27067771 ACTTTCATTTTTAACTCTTATAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTGG
1 A-TTTCA-TTTTAACTCTTATAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATATGATGTAA
27067836 TTGAAAAGGCATGAC
64 TTGAAAAGGCATGAC
27067851 ATTTC
1 ATTTC
27067856 TCCTTAAATG
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
78 1 0.01
79 9 0.12
80 68 0.87
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.36
Consensus pattern (78 bp):
ATTTCATTTTAACTCTTATAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATATGATGTAATT
GAAAAGGCATGAC
Found at i:27067894 original size:80 final size:78
Alignment explanation
Indices: 27067810--27067968 Score: 246
Period size: 80 Copynumber: 2.0 Consensus size: 78
27067800 CAATGAGTCA
* * * * *
27067810 TGTCTCTTCATTAGGATCTGATGTGGTTGAAAAGGCATGACATTTCTCCTTAAATGATGACTTAT
1 TGTCTCTTCATTAGGATCTGATGTAGCTAAAAAGACATGACATTTCTCCTT-AATGAAGACTTA-
*
27067875 TGTATCCTTAATGTG
64 TGTAACCTTAATGTG
27067890 TGTCTCTTCATTAGGATCTGATGTAGCTAAAAAGACATGACATTTCTCCTTAATGAAGACTTATG
1 TGTCTCTTCATTAGGATCTGATGTAGCTAAAAAGACATGACATTTCTCCTTAATGAAGACTTATG
27067955 TAACCTTAATGTG
66 TAACCTTAATGTG
27067968 T
1 T
27067969 TTATTGGTTG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
78 15 0.21
79 11 0.15
80 47 0.64
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (78 bp):
TGTCTCTTCATTAGGATCTGATGTAGCTAAAAAGACATGACATTTCTCCTTAATGAAGACTTATG
TAACCTTAATGTG
Found at i:27068419 original size:48 final size:49
Alignment explanation
Indices: 27068367--27068511 Score: 215
Period size: 48 Copynumber: 3.0 Consensus size: 49
27068357 GCTGATGTAT
* * *
27068367 TAATGCAAGA-CATTTAACAAAGATGCATTTAACAAACAAAACATTTAA
1 TAATGCAAGATTATTAAACAAAGATGCATTTAACAAACAAAACACTTAA
* *
27068415 TAATGGAA-ATTACTAAACAAAGATGCATTTAACAAACAAAACACTTAA
1 TAATGCAAGATTATTAAACAAAGATGCATTTAACAAACAAAACACTTAA
*
27068463 TGATGC-AGATTATTAAACAAAGATGCATTTAACAAACAAAACACTTAA
1 TAATGCAAGATTATTAAACAAAGATGCATTTAACAAACAAAACACTTAA
27068511 T
1 T
27068512 GAAGCATAAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
47 2 0.02
48 85 0.98
ACGTcount: A:0.52, C:0.14, G:0.09, T:0.25
Consensus pattern (49 bp):
TAATGCAAGATTATTAAACAAAGATGCATTTAACAAACAAAACACTTAA
Found at i:27068512 original size:48 final size:48
Alignment explanation
Indices: 27068382--27068523 Score: 221
Period size: 48 Copynumber: 2.9 Consensus size: 48
27068372 CAAGACATTT
* * *
27068382 AACAAAGATGCATTTAACAAACAAAACATTTAATAATGGAAATTACTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAAATTACTA
* *
27068430 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTATTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAAATTACTA
*
27068478 AACAAAGATGCATTTAACAAACAAAACACTTAATGAAGCATAATTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCA-AATTA
27068524 AACAACTTTA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
48 82 0.95
49 4 0.05
ACGTcount: A:0.53, C:0.14, G:0.09, T:0.24
Consensus pattern (48 bp):
AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAAATTACTA
Found at i:27078895 original size:71 final size:70
Alignment explanation
Indices: 27078804--27079030 Score: 328
Period size: 71 Copynumber: 3.2 Consensus size: 70
27078794 GAAACTTCAG
* * *
27078804 AAGTCAGTAGCCAAGGTAACCTTTCCCCTGAACTTTTACCGATACTTACTTGAGTTGTTCCAAAA
1 AAGTCAGTAGCCAAGGTAACCTTTCCCCTGAACTTCTACCAATACTT-CTTGAGTTGTTCCGAAA
27078869 CAACTC
65 CAACTC
* * * * * *
27078875 AAGTTAGTAGCCAAGGTAACCTTTCTCCTGAACTTCTATCTATATTTCCTTGAGTTGTTCTGAAA
1 AAGTCAGTAGCCAAGGTAACCTTTCCCCTGAACTTCTACCAATACTT-CTTGAGTTGTTCCGAAA
27078940 CAACTC
65 CAACTC
* *
27078946 AAGTCATTAGCCAAGGTAACCTTTCCCCTGAACTTCTACCAATACTTCTTTGAGTTGTTTCGAAA
1 AAGTCAGTAGCCAAGGTAACCTTTCCCCTGAACTTCTACCAATACTTC-TTGAGTTGTTCCGAAA
27079011 CAACTC
65 CAACTC
27079017 AAGTCAGTAGCCAA
1 AAGTCAGTAGCCAA
27079031 ATTTGACCAA
Statistics
Matches: 137, Mismatches: 18, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
70 1 0.01
71 136 0.99
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (70 bp):
AAGTCAGTAGCCAAGGTAACCTTTCCCCTGAACTTCTACCAATACTTCTTGAGTTGTTCCGAAAC
AACTC
Found at i:27087188 original size:15 final size:15
Alignment explanation
Indices: 27087143--27087216 Score: 58
Period size: 15 Copynumber: 4.9 Consensus size: 15
27087133 TCATCCATGC
**
27087143 TTGCAACATTAGTGT
1 TTGCAACACCAGTGT
* * *
27087158 TTGCAGCTCCAATGT
1 TTGCAACACCAGTGT
27087173 TTGCAACACCAGTGT
1 TTGCAACACCAGTGT
* ** *
27087188 TCGCAACATGAGTGC
1 TTGCAACACCAGTGT
*
27087203 TCGCAACACCAGTG
1 TTGCAACACCAGTG
27087217 CTCGCATCTT
Statistics
Matches: 45, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (15 bp):
TTGCAACACCAGTGT
Found at i:27087217 original size:15 final size:15
Alignment explanation
Indices: 27087175--27087222 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
27087165 TCCAATGTTT
*
27087175 GCAACACCAGTGTTC
1 GCAACACCAGTGCTC
**
27087190 GCAACATGAGTGCTC
1 GCAACACCAGTGCTC
27087205 GCAACACCAGTGCTC
1 GCAACACCAGTGCTC
27087220 GCA
1 GCA
27087223 TCTTCCAAGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.27, C:0.33, G:0.23, T:0.17
Consensus pattern (15 bp):
GCAACACCAGTGCTC
Found at i:27088845 original size:21 final size:21
Alignment explanation
Indices: 27088819--27088861 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
27088809 GGAGGAAGGA
27088819 AGGTGCAACGTTCGTTAAACT
1 AGGTGCAACGTTCGTTAAACT
27088840 AGGTGCAACGTTCGTTAAACT
1 AGGTGCAACGTTCGTTAAACT
27088861 A
1 A
27088862 CTAACACAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (21 bp):
AGGTGCAACGTTCGTTAAACT
Found at i:27091295 original size:24 final size:24
Alignment explanation
Indices: 27091266--27091403 Score: 159
Period size: 24 Copynumber: 5.8 Consensus size: 24
27091256 CTTGTCAAAT
* *
27091266 ACTTTATGTTTATGCTCGTCAGCT
1 ACTTTACGTTTATGCTCGTCAGCC
* * * **
27091290 ATTTTACGTTTATGCTTGTTAGAA
1 ACTTTACGTTTATGCTCGTCAGCC
** *
27091314 ACTTTACGTTTACACTCGTTAGCC
1 ACTTTACGTTTATGCTCGTCAGCC
*
27091338 ATTTTACGTTTATGCTCGTCAGCC
1 ACTTTACGTTTATGCTCGTCAGCC
*
27091362 ACTTTATGTTTATGCTCGTCAGCC
1 ACTTTACGTTTATGCTCGTCAGCC
*
27091386 ACCTTACGTTTATGCTCG
1 ACTTTACGTTTATGCTCG
27091404 AAGGAATGGA
Statistics
Matches: 94, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 94 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.43
Consensus pattern (24 bp):
ACTTTACGTTTATGCTCGTCAGCC
Found at i:27091332 original size:48 final size:48
Alignment explanation
Indices: 27091266--27091403 Score: 177
Period size: 48 Copynumber: 2.9 Consensus size: 48
27091256 CTTGTCAAAT
* * *
27091266 ACTTTATGTTTATGCTCGTCAGCTATTTTACGTTTATGCTTGTTAGAA
1 ACTTTATGTTTATGCTCGTCAGCCATTTTACGTTTATGCTCGTCAGAA
* ** * **
27091314 ACTTTACGTTTACACTCGTTAGCCATTTTACGTTTATGCTCGTCAGCC
1 ACTTTATGTTTATGCTCGTCAGCCATTTTACGTTTATGCTCGTCAGAA
**
27091362 ACTTTATGTTTATGCTCGTCAGCCACCTTACGTTTATGCTCG
1 ACTTTATGTTTATGCTCGTCAGCCATTTTACGTTTATGCTCG
27091404 AAGGAATGGA
Statistics
Matches: 75, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.43
Consensus pattern (48 bp):
ACTTTATGTTTATGCTCGTCAGCCATTTTACGTTTATGCTCGTCAGAA
Found at i:27092357 original size:216 final size:216
Alignment explanation
Indices: 27091398--27095073 Score: 4018
Period size: 216 Copynumber: 17.2 Consensus size: 216
27091388 CTTACGTTTA
* * * * * *
27091398 TGCTCGAAGGAATGGATAGTCTTGAATGCTTTAAGGAGCCGAAGCTCTAAAAAAACTCGTAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * *
27091463 TTTGACAAGTT-TGGAAATTCAGCCAAGAACCAAGAGAGAAATAATTTTCACGTAAATAAGTTTT
66 TTTGACAAGTTCT-GAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * *
27091527 TAATTCAAAGA-TAAAAGGTGTTTACGAAATGATAAACTATTTAGACCAAATGAT---ATATGCC
130 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
*
27091588 GAGCATGTAATGTTCAGAAAAT
195 GAGCATGGAATGTTCAGAAAAT
* * ** *
27091610 TGCTCGAAGGAATGGATCGTATTAAATACTTTAAGGAACTAAAGTTATAAAAGAACCCGTAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
** ** * **
27091675 TTTGACAAGTTC-GAAAGTTCGGTGAAGAACCAAGAGAGAATA-TTTTCACACAAAAATAAGTTT
66 TTTGACAAGTTCTG-AAGTTCGGCCAAGAACCAAGAGAGAA-ACAATTCTCACGTAAATAAGTTT
* * ** * * * *
27091738 TTAATTCAAACACCAATAGTTGTTTACAAAACAATAAAATGTTTAGACCAAATGATGTGATTTCC
129 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * *
27091803 CGAGCATGTAATGCTCAAAAAAT
194 CGAGCATGGAATGTTCAGAAAAT
* * * * *
27091826 TACTCGAAGGAATGGATCATCTTGAATA-TTTAAGGAATCAAAGTTATAAAA-AACCTTGTAAAA
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA-CTCGTAAAA
* * * ** *
27091889 GTGTGACAAGTTCAGAAGTTTGGTGAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAG----
65 GTTTGACAAGTTCTGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* *
27091950 --A-T-----A--AAAAGTTCTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCC
130 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* *
27092005 GAGCATGGAATATTCAAAAAAT
195 GAGCATGGAATGTTCAGAAAAT
* *
27092027 TGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCCAAGTTATAAAAGAACTCGTAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * *
27092092 TTTGACGAGTTC-GAATGTTTGGCCAAGAAACAAGAGAGAAACAATTCTCATGTAAATAAGTTTT
66 TTTGACAAGTTCTGAA-GTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
** * * **
27092156 TAATTCAAAGACCAAAAGTTGTTTACAAAACAACAAACTATTTAGACAAAATGGTGCGATTTCTA
130 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
*
27092221 GAGCATGAAATGTTCAGAAAAT
195 GAGCATGGAATGTTCAGAAAAT
* ** *
27092243 TGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-TTAGAGTTATAAAAGAACTCATAAAA
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA-AGTTATAAAAGAACTCGTAAAA
* * * *
27092307 GTGTGACAAGTTCTGAAGTTCGGCCGAA-AACTAAGAGAAAAATC-ATTCTCACGTGAATAAGTT
65 GTTTGACAAGTTCTGAAGTTCGGCC-AAGAACCAAGAGAGAAA-CAATTCTCACGTAAATAAGTT
* ** * * *
27092370 TTTAATTCAAAGAACAAAAGTTGTTTACAAAACAACAAACTATTTAGACAAAATGTTGTGATTTC
128 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* *
27092435 CCGAGCAT-GAAGTGTTCTGATAAT
193 CCGAGCATGGAA-TGTTCAGAAAAT
* * *
27092459 TGCTCGAAGGAATGCATCATCTTG-ATACTTTAAGGAACCGAAGTTATAAAAGAAGTCGTAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * * *
27092523 TATGACAAGTTC-GAAAGTTCGACCAAGAACTAAGGGAGAAACAATTCTCAAGTAAATAAGTTTT
66 TTTGACAAGTTCTG-AAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * *
27092587 TAATTCAAACACTAAAAGTTG-TTACAGAACGACAAACTATTTAGGCCAAATGATGTGATTTCCC
130 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
27092651 GAGCATGGAATGTTC-GAAAAAT
195 GAGCATGGAATGTTCAG-AAAAT
* * * *
27092673 TGCTCGAAAGAATGGATCATCTAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * * * * *
27092738 TCTGGCACGTTCGGAAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
66 TTTGACAAGTTCTGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
27092803 AATTCAAGGACCAAAACTTGTTTACAAAATGAAAAACTATTTAAACCAAATGATGCGATTTCCCG
131 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
27092868 AGCATGGAATGTTCAGAAAAT
196 AGCATGGAATGTTCAGAAAAT
* * * * *
27092889 TACTGGAAGGAATGGATCATCTTCAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAATAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * * * * *
27092954 TGTGACAAATTTTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAATTTTT
66 TTTGACAAGTTCTGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * **
27093019 AATTCGAAGACCAAAACTTGTATACAAAATGACAAACTATTTAGACCAAATAATGCGATTTCTTG
131 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* *
27093084 AGCATGTAATGTTCAAAAAAT
196 AGCATGGAATGTTCAGAAAAT
* * *
27093105 TGCTGGAAGGAATGAATCGTCTTGAATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * *
27093170 TTTGTCAAGTTC-GAAAGTTTGGCCAATATA-CAAGAGAGAAACAATACTCACGTAAATAA-TCT
66 TTTGACAAGTTCTG-AAGTTCGGCCAAGA-ACCAAGAGAGAAACAATTCTCACGTAAATAAGT-T
* * * * *
27093232 TTTTATTCAAAGACTAAAACTTGTTCAGAAAATGA-AAACCTATTTAGACCAAATGATGCGATTT
128 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA-CTATTTAGACCAAATGATGCGATTT
* **
27093296 CCTGAGCATGGAATGTTTGGAAAAT
192 CCCGAGCATGGAATGTTCAGAAAAT
* * * *
27093321 TGCTGGAAGGAATAGATCGTCTTAAATACTTTAAGGAAGCGAAGTTATAAAAGAACTCGTAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
** * *
27093386 TTTGACAAGTT-TGGAAGTTCATCCAAGAACCAAGAGGGAAACAATTCTCATGTAAATAAGTTTT
66 TTTGACAAGTTCT-GAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * *
27093450 TAATTCAAAGACCAAAACTTGTATACAAAATGATAAATTATTTAGACCAAATAATGCAATTTCCC
130 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
*
27093515 GAACATGGAATGTTC-GAAAAAT
195 GAGCATGGAATGTTCAG-AAAAT
* * * * *
27093537 TGCTTGAAGGAATGGATTGTCTTGAATAATTTGAGGAACCGAAGTTATAAAAGAACTTGTAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * *
27093602 ATTGACAAGTT-TGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATACTCACGTAAATATGTTTT
66 TTTGACAAGTTCT-GAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * **
27093666 TAATTCAAAGACAAAAAGTAGTTTGCAAAACGACAAACTATTTAGACCAAATGATGCGATTTCTT
130 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* * *
27093731 GAGCATGGAATGCTAAAAAAAT
195 GAGCATGGAATGTTCAGAAAAT
* * **
27093753 TACTCGATGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCG-AATAA
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA-AA
** * *
27093817 GTTTGACAAGTTCAAAAGTTCAGCCAAGAACCAAGAGAGAAA-AATTTCTCACGAAAATAAGTTT
65 GTTTGACAAGTTCTGAAGTTCGGCCAAGAACCAAGAGAGAAACAA-TTCTCACGTAAATAAGTTT
* * *
27093881 TTAATTCAAAAACCAATAA-TTGTTTACAAAATGACAAAACAATTTAGACCAAATGATGCCATTT
129 TTAATTCAAAGACCAA-AAGTTGTTTACAAAATGAC-AAACTATTTAGACCAAATGATGCGATTT
* *
27093945 CCCGAGCATGTAATGTTCGGAAAAT
192 CCCGAGCATGGAATGTTCAGAAAAT
* * * * * *
27093970 TGCTCGAAGGAATTGATCATTTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCATAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * ** *** * * *
27094035 TGTGACAAGTTCGGAAGTTCGGTGAAGAATTGAGAGAGAAACTATTCTCACGTAAATAAGATTAT
66 TTTGACAAGTTCTGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
** *
27094100 AATTCAAAGATAAAAAGTTGTTTACAAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCC
131 AATTCAAAGACCAAAAGTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* * *
27094165 AAGCATGGAATGTTTAAAAAAT
195 GAGCATGGAATGTTCAGAAAAT
* ** * ** *
27094187 TGTTCGATCGTATGGATCGTCTAAAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * *
27094252 TTTGGCAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAGTTTTT
66 TTTGACAAGTTCTGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
27094317 AATTCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACTAAATGATGCAATTTCCCG
131 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
27094382 AGCATGGAATGTTC-GAAAAAT
196 AGCATGGAATGTTCAG-AAAAT
* * * * *
27094403 TGCTGGAAGTAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAGTCATAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * * *
27094468 TTTGACAAGTTCTGCATTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGTAAATAAGTTTTT
66 TTTGACAAGTTCTGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
27094533 AATTCAAAGACCAGAACTTGTATACAAAATGACAAACTATTTAGACCAAATAATGCGATTTACCG
131 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* *
27094598 AGCATGGAATATTCAAAAAAT
196 AGCATGGAATGTTCAGAAAAT
* * *
27094619 TGCTGGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * **
27094684 TCTGACAAGTTC-GAAAGTTCGACCAAGAATCAAGAGAGGAAA-AATAATCACGTAAATAAGTTT
66 TTTGACAAGTTCTG-AAGTTCGGCCAAGAACCAAGAGA-GAAACAATTCTCACGTAAATAAGTTT
* * * **
27094747 TTAATTCAAAGACCAAAATTTGTGTACAAAATTACAAACTATTTAGACCAAATGATGATATTTCC
129 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* *
27094812 CAAGCATGGAATGTTCAAAAAAT
194 CGAGCATGGAATGTTCAGAAAAT
* * * * * *
27094835 TGCTGGAAGGAATAGATCGT-TTG--T-C--CAA-GAACTC---G---TAAAAG--TTTG-ACAA
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-CGAAGTTATAAAAGAACTCGTAAAA
* * *
27094884 GTTCGGA-ATGTT-T---G-T---CCAAGAACCAAGAGAGAAACAATTCTCACGAAAATAAGTTT
65 GTT-TGACAAGTTCTGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * * * * * * *
27094940 TTAATTCAAAAACAAAAACTGGTATACAAAATGATAAACTATTTAGACAAAATAATGAGATTTCT
129 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
** **
27095005 CGATAATGGAATGTTTGGAAAAT
194 CGAGCATGGAATGTTCAGAAAAT
* * *
27095028 CGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTT
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
27095074 CGACCAAGAA
Statistics
Matches: 2937, Mismatches: 445, Indels: 172
0.83 0.13 0.05
Matches are distributed among these distances:
192 4 0.00
193 119 0.04
194 3 0.00
196 2 0.00
197 2 0.00
199 3 0.00
200 3 0.00
201 100 0.03
202 84 0.03
203 3 0.00
204 6 0.00
207 1 0.00
208 2 0.00
209 5 0.00
210 3 0.00
211 1 0.00
212 114 0.04
213 38 0.01
214 82 0.03
215 310 0.11
216 1683 0.57
217 358 0.12
218 11 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (216 bp):
TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
TTTGACAAGTTCTGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
AGCATGGAATGTTCAGAAAAT
Found at i:27095016 original size:193 final size:192
Alignment explanation
Indices: 27094669--27095019 Score: 479
Period size: 193 Copynumber: 1.8 Consensus size: 192
27094659 GAAGTTATAA
*
27094669 AAGAACTCGTAAAAGTCTGACAAGTTCGAAAGTTCGACCAAGAATCAAGAGAGGAAAAATAATCA
1 AAGAACTCGTAAAAGTCTGACAAGTTCGAAAGTTCGACCAAGAACCAAGAGAGGAAAAATAATCA
* * * * * * * *
27094734 CGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTGTACAAAATTACAAACTATTTAGACCAAA
66 CGAAAATAAGTTTTTAATTCAAAAACAAAAACTGGTATACAAAATGACAAACTATTTAGACAAAA
* * *
27094799 TGATGATATTTCCCAAGCATGGAATGTTCAAAAAATTGCTGGAAGGAATAGATCGTTTGTCC
131 TAATGAGATTTCCCAAGAATGGAATGTTCAAAAAATTGCTGGAAGGAATAGATCGTTTGTCC
* * * * **
27094861 AAGAACTCGTAAAAGTTTGACAAGTTCGGAATGTTTGTCCAAGAACCAAGAGA-GAAACAATTCT
1 AAGAACTCGTAAAAGTCTGACAAGTTC-GAAAGTTCGACCAAGAACCAAGAGAGGAAA-AATAAT
*
27094925 CACGAAAATAAGTTTTTAATTCAAAAACAAAAACTGGTATACAAAATGATAAACTATTTAGACAA
64 CACGAAAATAAGTTTTTAATTCAAAAACAAAAACTGGTATACAAAATGACAAACTATTTAGACAA
* * *
27094990 AATAATGAGATTTCTCGATAATGGAATGTT
129 AATAATGAGATTTCCCAAGAATGGAATGTT
27095020 TGGAAAATCG
Statistics
Matches: 135, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
192 30 0.22
193 105 0.78
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (192 bp):
AAGAACTCGTAAAAGTCTGACAAGTTCGAAAGTTCGACCAAGAACCAAGAGAGGAAAAATAATCA
CGAAAATAAGTTTTTAATTCAAAAACAAAAACTGGTATACAAAATGACAAACTATTTAGACAAAA
TAATGAGATTTCCCAAGAATGGAATGTTCAAAAAATTGCTGGAAGGAATAGATCGTTTGTCC
Found at i:27097601 original size:80 final size:80
Alignment explanation
Indices: 27097476--27097623 Score: 269
Period size: 80 Copynumber: 1.9 Consensus size: 80
27097466 ACTAATTTTA
*
27097476 TTTTAACTCTTGTAGGGAAACCAATGAGTCATATCTCTTCATTAGGATCTGATGTAGTTGAAAAG
1 TTTTAACTATTGTAGGGAAACCAATGAGTCATATCTCTTCATTAGGATCTGATGTAGTTGAAAAG
27097541 GCAATGCAATTTCAT
66 GCAATGCAATTTCAT
* *
27097556 TTTTAACTATTGTAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGTTGAAAAG
1 TTTTAACTATTGTAGGGAAACCAATGAGTCATATCTCTTCATTAGGATCTGATGTAGTTGAAAAG
27097621 GCA
66 GCA
27097624 TGTCATTTCT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 65 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (80 bp):
TTTTAACTATTGTAGGGAAACCAATGAGTCATATCTCTTCATTAGGATCTGATGTAGTTGAAAAG
GCAATGCAATTTCAT
Found at i:27100218 original size:23 final size:23
Alignment explanation
Indices: 27100192--27100235 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
27100182 ATCATATACA
27100192 TCATTTGAAATCTATATTAGAAG
1 TCATTTGAAATCTATATTAGAAG
*
27100215 TCATTTGAAATCTGTATTAGA
1 TCATTTGAAATCTATATTAGA
27100236 GGTATTAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (23 bp):
TCATTTGAAATCTATATTAGAAG
Found at i:27108002 original size:17 final size:18
Alignment explanation
Indices: 27107970--27108009 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
27107960 AAAGTGATCA
*
27107970 AAAAATTCGAGAAAAAAG
1 AAAAATACGAGAAAAAAG
27107988 AAAAATACGAG-AAAAAG
1 AAAAATACGAGAAAAAAG
27108005 AAAAA
1 AAAAA
27108010 AAATAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.72, C:0.05, G:0.15, T:0.07
Consensus pattern (18 bp):
AAAAATACGAGAAAAAAG
Found at i:27108014 original size:20 final size:18
Alignment explanation
Indices: 27107969--27108011 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
27107959 AAAAGTGATC
*
27107969 AAAAAATTCGAGAAAAAA
1 AAAAAATACGAGAAAAAA
*
27107987 GAAAAATACGAGAAAAAGA
1 AAAAAATACGAGAAAAA-A
27108006 AAAAAA
1 AAAAAA
27108012 ATAAAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.74, C:0.05, G:0.14, T:0.07
Consensus pattern (18 bp):
AAAAAATACGAGAAAAAA
Found at i:27113252 original size:20 final size:21
Alignment explanation
Indices: 27113217--27113255 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
27113207 CTTCTTTTCT
*
27113217 CTCATTCTCTCGTGTTTTTAC
1 CTCATGCTCTCGTGTTTTTAC
27113238 CTCATGCTCTC-TGTTTTT
1 CTCATGCTCTCGTGTTTTT
27113256 CTTTTGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.08, C:0.28, G:0.10, T:0.54
Consensus pattern (21 bp):
CTCATGCTCTCGTGTTTTTAC
Found at i:27119253 original size:25 final size:25
Alignment explanation
Indices: 27119189--27119239 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
27119179 AAAAGTGAAG
27119189 AATGATTATGTTTTAACTAACCATA
1 AATGATTATGTTTTAACTAACCATA
27119214 AATGATTATGTTTTAACTAACCATA
1 AATGATTATGTTTTAACTAACCATA
27119239 A
1 A
27119240 CTTGAATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (25 bp):
AATGATTATGTTTTAACTAACCATA
Found at i:27121462 original size:215 final size:214
Alignment explanation
Indices: 27120935--27125671 Score: 5245
Period size: 216 Copynumber: 22.1 Consensus size: 214
27120925 TTGATAAGTT
** *
27120935 GTTTGACAAGTTCCAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
27121000 TAATTCAAAGACCAAAAGTTGTTTACAAAATCACAAACTATTTAAACCAAATGATACGATTTCCT
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-
* * * * * **
27121065 TAGCATGGAATATTCCAAAAATTGTTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTAAA
130 GAGCATGGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
27121130 GTTATAAAAGAACTCATAAAA
194 GTTATAAAAGAACTCGTAAAA
* * * * * * *
27121151 GTTTGACAAGTTCGAAAATTCGTTCAAGAACCAAAAGAGAAATAATTCTCACGAAAATAAGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
27121216 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-C
* * * * *
27121281 GAGCATGGAATGTTCGACAAAATGCTCGAAGGAATGGATCATTTTAAATACATTAAGGAA-CAAA
130 GAGCATGGAATGTTCGA-AAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
**
27121345 GTTATAAAAGAACTCGTAGCA
194 GTTATAAAAGAACTCGTAAAA
** * * * *
27121366 GTTTGACAAGTTCGGAAGTTTGTCCAAGAA-CAAAAGAGAAACAATTCTCATGTAAACAGGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
27121430 TAATTTCAAAGACCGAAACTTGTTTCCAAAATGACAAACTATTTAGACCAAATGATGCTATTTCC
66 TAA-TTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-C
* * * * * * ** *
27121495 CG-GGATTGAAAT-TGTCGAAAATTGCTCAAATGAGTGGAAAGTCTTGAACACTTTAAGGAACCG
129 CGAGCA-TGGAATGT-TCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG
*
27121558 AAGCTAT-AAAGAACTCGTAAAA
192 AAGTTATAAAAGAACTCGTAAAA
* * * *
27121580 GTTTAACAAGTTCGGAAGTTCGTCCAAGAACCTAGAGGGAAACAATTCTCACGTAAATAAGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* *
27121645 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATAGACCAAATGATTCGATTTCCT
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-
* * * * * * *
27121710 GAGCATGGAATGCTCGAAAAATTTCCCGAAGGAATGGATTGTGTTGAATACTCTACA-GAACCAA
130 GAGCATGGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTA-AGGAACCGA
*
27121774 AGTTATAAAACAACTCGTAAAA
193 AGTTATAAAAGAACTCGTAAAA
* * * * * *
27121796 GTTTGACAAGTTTGAAAGTTCCTCCAAGAACCAAGAGAGAAATAATTCTCACATAAATATGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
27121861 TAATTAAAAGACCAAAAGTTATTTACAAAATGACAAGCTATTTAGACCAAATGATGCGATTTCTC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-C
* * *
27121926 GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATTTTGAATAC-TTAAGGAACCAAA
130 GAGCATGGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
* *
27121990 GATATAAAAGAGCTCGTAAAA
194 GTTATAAAAGAACTCGTAAAA
* * * * *
27122011 GTTTGACAAGTTCGAAAGTTCATCCACGAACCAAGAGAAAAACAATTATGACGTAAATAAGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* ** * **
27122076 TAATTTAAAGTTCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATATGATTTCCT
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-
* * ** * *
27122141 GAGCATGTAATGTTCGAAAAATTCCTTAAAGGAATCGATTGTCTTGAATACTTTAAGGAACCGAA
130 GAGCATGGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
27122206 GTTATAAAAGAACTCGTAAAA
194 GTTATAAAAGAACTCGTAAAA
* * * * * *
27122227 GTTTGACAAGTTCGAAAGTTCATTCAAGAACAAAAAGAGAAACAATTCTCATGTAAATAAGTTTA
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
27122292 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-C
* * * * * **
27122357 G-GGATTGGAATGGTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACATTGAGGAATTGA
130 GAGCA-TGGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
*
27122421 AGTTATAAAAGAACTCGTAGAA
193 AGTTATAAAAGAACTCGTAAAA
* ** * * * * *
27122443 GTTTGACAAGTTCAGAAGTTTGTCCAAGAACAAAAAGTGAAAACAATTCTCATGTAAACAAGTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAATAAGTTT
* * * *
27122508 TTAATTCAAAGACAAAAACTTGTTTCCAAAATGACAAACTATTTAGACCAAATGATGCAATTTCC
65 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-C
* * * *
27122573 CG-GGATTGGAAT-TGTC-AAAAATTGCTCAAATGAATGGATCGTCTTGAACACTTTAAGGAACC
129 CGAGCA-TGGAATGT-TCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
*
27122635 GAAGTTATAAAAGAACTCGAAAAA
191 GAAGTTATAAAAGAACTCGTAAAA
* * * * * * * *
27122659 GTTTGACAAGTTTGGAAGTTCGTGCTAGAACCAAAAGTGAAAAAATTCTCACGTAAATAATTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * **
27122724 TAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTCC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCC
* * * * * *
27122788 GAGCATGTAATGCTCGAAAAATTCCTCGAAGGAATTGATTGTCTTGAATGCTTTAAGGAACCGAA
130 GAGCATGGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
27122853 GTTATAAAAGAACTCGTAAAA
194 GTTATAAAAGAACTCGTAAAA
* * * * * * * * *
27122874 GTTTAACAAGTTCGAAAGTTTATCCAAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTA
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * ** * *
27122939 CAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA-TTAACGATGCGATTTCCC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCG
* * * * * * * * *
27123003 AGGATTGGAAAGGTCGGAAAATTGCTCGAAGAAATGGATCATCCTGAATACTTTAAGGAGCCAAA
131 AGCA-TGGAATGTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
27123068 GTTATAAAAGAACTTGTAAAA
194 GTTATAAAAGAACTCGTAAAA
** *
27123089 GTTTGATTAGTTCGGAAGTTCATCCAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
27123154 TAATTCAAAAACTAAAAGTTGTTTACAAGATGACAAACTATATAGACCAAATGATGCGATTTCCC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CC
* * *
27123219 GAGCTTGGAATGTTCGAAAAATAGCTCGAAGGAATGGATCATCTCGAATA-TTGTAAGGAACCGA
130 GAGCATGGAATGTTCGAAAAAT-GCTCGAAGGAATGGATCGTCTTGAATACTT-TAAGGAACCGA
*
27123283 AGTTATAAAATAACTCGTAAAA
193 AGTTATAAAAGAACTCGTAAAA
* * * * *
27123305 GTTTGATAAATTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
27123370 TAATTCAAATACCAAAAGTTGTTTAAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC-GATTTCC
* * * * * *
27123435 GATCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAATCGAT
130 GAGCATGGAATG-TTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
27123500 GTTATAAAAAGAACTCGT-AAA
194 GTTAT-AAAAGAACTCGTAAAA
* * * *
27123521 GGTTGATAAGTTAGGAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * * *
27123586 TAATTCAAAAAGCAAAAGTTGTTTAAAAAATGAAAAACTATTTAGATCAAATGATACGAATTACC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG-ATTTCC
* *
27123651 GAGCATGGAATGTTCGAAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAA
130 GAGCATGGAATGTTCGAAA-AATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
* *
27123716 TTTATAAAAGAACTCATAAAA
194 GTTATAAAAGAACTCGTAAAA
** * *
27123737 GTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
27123802 T-ATGTCAAAGACCAAAACTTGTTTACACAATGACAAACGATTTAGACCAAATGATGCAATTTCT
66 TAAT-TCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-
* ** * * * *
27123866 CGAGCATTGAATGTTAAAAAAATTGCTTGAAGG-A---A-----TTAAATACATTAAGGAACCAA
129 CGAGCATGGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
27123922 AGTTATAAAAGAACTCGTAAAA
193 AGTTATAAAAGAACTCGTAAAA
* ** ** * * *
27123944 TTTTGACCAA-TTCAAAAGTTTGTCCAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTT
1 GTTTGA-CAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
27124008 TTAATTCGAAGACCAAAACTTGTTT-CGAAAATGACAAACTATTTAGACCAAATGATGAGATTTT
65 TTAATTCAAAGACCAAAAGTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGA-TTT
* * * * * * * *
27124072 CC-AGGATTGGAATGGTCG-AAATTACTTGAAGGAATGCATAGTCTTGAACACTTTAAGGAACCG
128 CCGAGCA-TGGAATGTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG
*
27124135 AAGTTATCAAAAGAACTCATAAAA
192 AAGTTAT-AAAAGAACTCGTAAAA
*
27124159 GTTTGACAAGTTCGGAAGTTCATCCAATG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * *
27124223 TTAATTAAAAGACGAAAAAGTTGTTTACAAAATGACAAACTATATAGAGACCAAAAGATTCGATT
65 TTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTAT-T-TAGACCAAATGATGCGATT
* * * * * *
27124288 TCTTGAGCATGGAATGCTCGAAAAATTTCTCGAAGGAATGGATTGTGTTAAATACTTTACA-GAA
127 TC-CGAGCATGGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTA-AGGAA
* * * ** * *
27124352 CCGAAGCTGTACAACTATTCATAAAA
189 CCGAAGTTATAAAAGAACTCGTAAAA
* ** * *
27124378 GTTTGACAAGTAT-GGAAGTTCGTCCAAGAACCAATCGAGAAACAATTCTCACATAAATATGTTT
1 GTTTGACAAGT-TCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
27124442 TTAATTAAAAGACCAAAAGTTGTTTA-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTT
65 TTAATTCAAAGACCAAAAGTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGA-TTT
* * * **
27124506 TCGAGCGTGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTGAAGGAATTG
128 CCGAGCATGGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG
* *
27124571 ACGATATAAAA-AA-TC------
192 AAGTTATAAAAGAACTCGTAAAA
* * * * *
27124586 --TTG-TAA-TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTATATGAGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* ** * **
27124647 TAATTTAAAGTTCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTCC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCC
* * * * * * *
27124711 GAGCATGTAATGCTCGTAAAATTCCTCGAAGGAATTGATTGTCTTGAATGCTTTAAGG-ACCGAA
130 GAGCATGGAATGTTCG-AAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
27124775 GTTATAAAAGAACTCGTAAAA
194 GTTATAAAAGAACTCGTAAAA
* * * * * * * * *
27124796 GTTTAACAAGTTCGAAAGTTTATCCAAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTA
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * ** *
27124861 CAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA-TTAATGATGCGATTTCCC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCG
* * * * * * * * *
27124925 AGGATTGGAAAGGTCGGAAAATTGCTCGAAGAAATGGATCATCCTGAATACTTTAAGGAGCCAAA
131 AGCA-TGGAATGTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
27124990 GTTATAAAAGAACTTGTAAAA
194 GTTATAAAAGAACTCGTAAAA
** * * *
27125011 GTTTGATTAGTTCAGAAATTCATCCAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
27125076 TAATTCAAAAACTAAAAGTTGTTTACAAAATGACAAACTATATAGACCAAATGATGCGATTTCCC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CC
* * *
27125141 GAGCTTGGAATGTTCGAAAAATAGCTCGAAGGAATGGATCATCTCGAATA-TTGTAAGGAACCGA
130 GAGCATGGAATGTTCGAAAAAT-GCTCGAAGGAATGGATCGTCTTGAATACTT-TAAGGAACCGA
*
27125205 AGTTATAAAATAACTCGTAAAA
193 AGTTATAAAAGAACTCGTAAAA
* * * * *
27125227 GTTTGATAAATTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
27125292 TAATTCAAATACCAAAAGTTGTTTAAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC-GATTTCC
* * * * * *
27125357 GATCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAATCGAT
130 GAGCATGGAATG-TTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
27125422 GTTATAAAAAGAACTCGT-AAA
194 GTTAT-AAAAGAACTCGTAAAA
* * * *
27125443 GGTTGATAAGTTAGGAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * *
27125508 TAATTCAAAAAGCAAAAGTTGTTTAAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTACC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG-ATTTCC
* * *
27125573 GAGCATGGAATGTTCGAAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTATGGAATCGAA
130 GAGCATGGAATGTTCGAAA-AATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
* *
27125638 TTTATAAAAGAACTCATAAAA
194 GTTATAAAAGAACTCGTAAAA
27125659 GTTTGACAAGTTC
1 GTTTGACAAGTTC
27125672 AAAATCATAT
Statistics
Matches: 3831, Mismatches: 585, Indels: 210
0.83 0.13 0.05
Matches are distributed among these distances:
202 11 0.00
203 53 0.01
204 99 0.03
205 12 0.00
206 11 0.00
207 147 0.04
208 9 0.00
209 1 0.00
212 3 0.00
213 18 0.00
214 356 0.09
215 1014 0.26
216 1753 0.46
217 171 0.04
218 49 0.01
219 85 0.02
220 38 0.01
221 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (214 bp):
GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCG
AGCATGGAATGTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
TATAAAAGAACTCGTAAAA
Found at i:27122106 original size:431 final size:432
Alignment explanation
Indices: 27120935--27125671 Score: 5353
Period size: 431 Copynumber: 11.0 Consensus size: 432
27120925 TTGATAAGTT
* * *
27120935 GTTTGACAAGTTCCAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTT
1 GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
27121000 TAATTCAAAGACCAAAAGTTGTTTACAAAATCACAAACTATTTAAACCAAATGATACGATTTC-C
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * * * **
27121064 TTAGCATGGAATATTCCAAAAATTGTTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTAA
131 -GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* * * * * *
27121129 AGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAATTCGTTCAAGAACCAAAAGAGAAAT
195 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAAC
*
27121194 AATTCTCACGAAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
260 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
*
27121259 AGACCAAATGATGCGATTT-CTCGAGCATGGAATGTTCGACAAAA-TGCTCGAAGGAATGGATCA
325 AGACCAAATGATGCGATTTCCT-GAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCG
* * * * **
27121322 TTTTAAATACATTAAGGAA-CAAAGTTATAAAAGAACTCGTAGCA
388 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
* ** * * *
27121366 GTTTGACAAGTTCGGAAGTTTGTCCAAGAA-CAAAAGAGAAACAATTCTCATGTAAACAGGTTTT
1 GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
27121430 TAATTTCAAAGACCGAAACTTGTTTCCAAAATGACAAACTATTTAGACCAAATGATGCTATTTCC
66 TAA-TTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
* * * * * ** *
27121495 CG-GGATTGAAAT-TGTCG-AAAATTGCTCAAATGAGTGGAAAGTCTTGAACACTTTAAGGAACC
130 CGAGCA-TGGAATGT-TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* * * * * *
27121557 GAAGCTAT-AAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCTAGAGGGAA
193 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAA
*
27121621 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
258 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * * * *
27121686 ATAGACCAAATGATTCGATTTCCTGAGCATGGAATGCTCGAAAAATTTCCCGAAGGAATGGATTG
323 TTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
* * * *
27121751 TGTTGAATACTCTACA-GAACCAAAGTTATAAAACAACTCGTAAAA
388 TCTTGAATACTTTA-AGGAACCGAAGTTATAAAAGAACTCGTAAAA
* * * * * *
27121796 GTTTGACAAGTTTGAAAGTTCCTCCAAGAACCAAGAGAGAAATAATTCTCACATAAATATGTTTT
1 GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
27121861 TAATTAAAAGACCAAAAGTTATTTACAAAATGACAAGCTATTTAGACCAAATGATGCGATTTCTC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * *
27121926 GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATTTTGAATAC-TTAAGGAACCAAA
131 GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
* * * *
27121990 GATATAAAAGAGCTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCACGAACCAAGAGAAAAACA
196 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACA
* * * ** *
27122055 ATTATGACGTAAATAAGTTTTTAATTTAAAGTTCAAAATTTGTTTACAAAATGACAAACTATTTA
261 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
** * * ** * *
27122120 GACCAAATGATATGATTTCCTGAGCATGTAATGTTCGAAAAATTCCTTAAAGGAATCGATTGTCT
326 GACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCT
27122185 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
391 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
* * * *
27122227 GTTTGACAAGTTCGAAAGTTCATTCAAGAACAAAAAGAGAAACAATTCTCATGTAAATAAGTTTA
1 GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTT
*
27122292 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * * * **
27122357 G-GGATTGGAATGGTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACATTGAGGAATTGA
131 GAGCA-TGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* ** * * *
27122421 AGTTATAAAAGAACTCGTAGAAGTTTGACAAGTTC-AGAAGTTTGTCCAAGAACAAAAAGTGAAA
195 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCATCCAAGAACCAAGAGAG-AA
* * * *
27122485 ACAATTCTCATGTAAACAAGTTTTTAATTCAAAGACAAAAACTTGTTTCCAAAATGACAAACTAT
258 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * * *
27122550 TTAGACCAAATGATGCAATTTCCCG-GGATTGGAAT-TGTC-AAAAATTGCTCAAATGAATGGAT
323 TTAGACCAAATGATGCGATTTCCTGAGCA-TGGAATGT-TCGAAAAATTGCTCGAAGGAATGGAT
* *
27122612 CGTCTTGAACACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAA
386 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
* * * * * * * *
27122659 GTTTGACAAGTTTGGAAGTTCGTGCTAGAACCAAAAGTGAAAAAATTCTCACGTAAATAATTTTT
1 GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTT
* * **
27122724 TAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-ATATTT-TC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-
* * * * * *
27122787 CGAGCATGTAATGCTCGAAAAATTCCTCGAAGGAATTGATTGTCTTGAATGCTTTAAGGAACCGA
130 CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* * * * *
27122852 AGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTTATCCAAGAACAAAAATAGAAAC
195 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAAC
* * **
27122917 AATTCTCACATAAATGAGTTTACAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
260 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
** * * * * * * * *
27122982 AGA-TTAACGATGCGATTTCC-CAGGATTGGAAAGGTCGGAAAATTGCTCGAAGAAATGGATCAT
325 AGACCAAATGATGCGATTTCCTGAGCA-TGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
* * * *
27123045 CCTGAATACTTTAAGGAGCCAAAGTTATAAAAGAACTTGTAAAA
389 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
** * * *
27123089 GTTTGATTAGTTCGGAAGTTCATCCAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTT
1 GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
27123154 TAATTCAAAAACTAAAAGTTGTTTACAAGATGACAAACTATATAGACCAAATGATGCGATTTCCC
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * *
27123219 GAGCTTGGAATGTTCGAAAAATAGCTCGAAGGAATGGATCATCTCGAATA-TTGTAAGGAACCGA
131 GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT-TAAGGAACCGA
* * * *
27123283 AGTTATAAAATAACTCGTAAAAGTTTGATAAATTC-AGAAGTTCGTCCAAGAACCAAGAGAGAAA
195 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCATCCAAGAACCAAGAGAGAAA
* * * * *
27123347 CAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTTAAAAAATGAAAAACTATT
259 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * * *
27123412 TAGACCAAATGATGCAAATTACC-GATCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCG
324 TAGACCAAATGATGC-GATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
* * *
27123476 TCTTGAATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAA
388 TCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAA
* * * * * *
27123521 GGTTGATAAGTTAGGAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * * *
27123586 TAATTCAAAAAGCAAAAGTTGTTTAAAAAATGAAAAACTATTTAGATCAAATGATACGAATTAC-
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG-ATTTCT
* *
27123650 CGAGCATGGAATGTTCGAAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGA
130 CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* * *
27123715 ATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAAC
195 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAAC
* * * *
27123780 AATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTTACACAATGACAAACGATT
260 AATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * ** *
27123844 TAGACCAAATGATGCAATTT-CTCGAGCATTGAATGTTAAAAAAATTGCTTGAAGG-A---A---
324 TAGACCAAATGATGCGATTTCCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
* * *
27123901 --TTAAATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
388 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
* * ** * *
27123944 TTTTGACCAA-TTCAAAAGTTTGTCCAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTT
1 GTTTGA-CAAGTTCGAAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
27124008 TTAATTCGAAGACCAAAACTTGTTT-CGAAAATGACAAACTATTTAGACCAAATGATGAGATTT-
65 TTAATTCAAAGACCAAAAGTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * * * * *
27124071 TCCAGGATTGGAATGGTCG--AAATTACTTGAAGGAATGCATAGTCTTGAACACTTTAAGGAACC
129 TCGAGCA-TGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* * *
27124134 GAAGTTATCAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCATCCAATG-ACCAAGAGGG
193 GAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAA-GAACCAAGAGAG
* * *
27124198 AAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACGAAAAAGTTGTTTACAAAATGACAAAC
256 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAACTTGTTTACAAAATGACAAAC
* * * * * *
27124263 TATATAGAGACCAAAAGATTCGATTTCTTGAGCATGGAATGCTCGAAAAATTTCTCGAAGGAATG
320 TAT-T-TAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * * * * ** * *
27124328 GATTGTGTTAAATACTTTACA-GAACCGAAGCTGTACAACTATTCATAAAA
383 GATCGTCTTGAATACTTTA-AGGAACCGAAGTTATAAAAGAACTCGTAAAA
* * ** * *
27124378 GTTTGACAAGTAT-GGAAGTTCGTCCAAGAACCAATCGAGAAACAATTCTCACATAAATATGTTT
1 GTTTGACAAGT-TCGAAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
27124442 TTAATTAAAAGACCAAAAGTTGTTTA-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTT
65 TTAATTCAAAGACCAAAAGTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * **
27124506 TCGAGCGTGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTGAAGGAATTG
129 TCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG
* * * * *
27124571 ACGATATAAAA-AA-TC--------TTG-TAA-TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
194 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAA
* * * * **
27124624 CAATTCTCATGTATATGAGTTTTTAATTTAAAGTTCAAAACTTGTTTACAAAATGACAAACTATT
259 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
** * * * * * *
27124689 TAGACCAAATGAT-ATATTTTCC-GAGCATGTAATGCTCGTAAAATTCCTCGAAGGAATTGATTG
324 TAGACCAAATGATGCGA-TTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
*
27124752 TCTTGAATGCTTTAAGG-ACCGAAGTTATAAAAGAACTCGTAAAA
388 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
* * * * * * *
27124796 GTTTAACAAGTTCGAAAGTTTATCCAAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTA
1 GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTT
* * **
27124861 CAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA-TTAATGATGCGATTTC-C
66 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * * * * * * * *
27124924 CAGGATTGGAAAGGTCGGAAAATTGCTCGAAGAAATGGATCATCCTGAATACTTTAAGGAGCCAA
131 GAGCA-TGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* ** *
27124989 AGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCAGAAA-TTCATCCAAGAACCAAGAGGGAAA
195 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGTTCATCCAAGAACCAAGAGAGAAA
* * * *
27125053 CAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTACAAAATGACAAACTATA
259 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * *
27125118 TAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTCGAAAAATAGCTCGAAGGAATGGATCAT
324 TAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
* *
27125183 CTCGAATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAA
389 CTTGAATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
* * * * *
27125227 GTTTGATAAATTC-AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTT
1 GTTTGACAAGTTCGA-AAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * *
27125291 TTAATTCAAATACCAAAAGTTGTTTAAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTAC
65 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC-GATTTC
* * * * *
27125356 -CGATCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAATCG
129 TCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG
* * * * * *
27125420 ATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATCCAAGAACCAAGAGAGAA
194 AAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAA
* * * * *
27125484 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTTAAAAAATGAAAAACTAT
258 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * *
27125549 TTAGATCAAATGATGCGAATTACC-GAGCATGGAATGTTCGAAATATTGCTCGAAGGAATGGATC
323 TTAGACCAAATGATGCG-ATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC
* * * *
27125613 GTCTTGAATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAA
387 GTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
27125659 GTTTGACAAGTTC
1 GTTTGACAAGTTC
27125672 AAAATCATAT
Statistics
Matches: 3625, Mismatches: 583, Indels: 195
0.82 0.13 0.04
Matches are distributed among these distances:
416 3 0.00
417 70 0.02
418 114 0.03
419 52 0.01
420 15 0.00
421 45 0.01
422 129 0.04
423 218 0.06
424 5 0.00
425 45 0.01
426 2 0.00
427 3 0.00
428 7 0.00
429 298 0.08
430 493 0.14
431 916 0.25
432 871 0.24
433 141 0.04
434 146 0.04
435 10 0.00
436 42 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (432 bp):
GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTT
TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACA
ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
GACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCT
TGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
Found at i:27125993 original size:25 final size:24
Alignment explanation
Indices: 27125957--27126003 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
27125947 AGTTTATAAT
27125957 AATTCTCTTTGAGTTTTTCTTTAAG
1 AATTCTCTTTGAGTTTTT-TTTAAG
27125982 AATTGCTC-TTGAGTTTTTTTTA
1 AATT-CTCTTTGAGTTTTTTTTA
27126004 GAAGTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.19
25 14 0.67
26 3 0.14
ACGTcount: A:0.19, C:0.11, G:0.13, T:0.57
Consensus pattern (24 bp):
AATTCTCTTTGAGTTTTTTTTAAG
Found at i:27128997 original size:216 final size:216
Alignment explanation
Indices: 27128576--27132749 Score: 4994
Period size: 216 Copynumber: 19.4 Consensus size: 216
27128566 GCTCACATCA
* * * *
27128576 GAACCGAAGTTATAAAAGAACTCGTAAAAAGTTTAACAAGTT-TAGAAGTTTGTCAAAGAACCAA
1 GAACCGAAGTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAA
* * * *
27128640 GAGAG-AACAAATTCTGACGTGAATAAGTTTTTAATTCAAAAACCAAAAGTTTATTTACAAAATG
64 GAGAGAAAC-AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATG
* *
27128704 ACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGG
127 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGG
* *
27128769 AATGGATCGTCTTAAATACTTTAAT
192 AATGGATCGTCTTGAATACTTTAAG
* * * * *
27128794 GAATCAAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCCAAAGTTCATCCAAGAACCAAGA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
*
27128859 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAA
66 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * ** * * * * *
27128924 ACTATTTAAACCAAATGATACGATTTCCTTAGAATGGAATATTCCAAAAATTGTTCGAAGAAATG
131 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
27128989 GATCGTCTTGAATACTTTAAG
196 GATCGTCTTGAATACTTTAAG
** * * * *
27129010 GAACTAAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTGAAAATTCGTCCAAGAACCAAAA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* *
27129075 GAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
66 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
27129140 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
131 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * *
27129205 GATCATTTTAAATACATTAAG
196 GATCGTCTTGAATACTTTAAG
* * * * *
27129226 GAA-CAAAGTTATAAAAGAACTCGTAGAAGTTTGACAAGTTCGGAAGTTTGTCCAAGAA-CAAAA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* * * * * *
27129289 GAGAAACAATTCTCATGTAAACAGGTTTTTAATTTCAAAGACCGAAACTTGTTTCCAAAATGAC-
66 GAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * *
27129353 AACTATTTAGACCAAATGATGCGATTTCCCG-GGATTGGAAT-TGTC-AAAAATTGCTCAAATGA
130 AACTATTTAGACCAAATGATGCGATTTCCCGAGCA-TGGAATGT-TCGAAAAATTGCTCGAAGGA
* * *
27129415 GTGGAACGTCTTGAACACTTTAAG
193 ATGGATCGTCTTGAATACTTTAAG
* * *
27129439 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCTAGA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
*
27129504 GGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
66 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * * *
27129569 ACTATATAGACCAAATGATTCGATTTCCCGAGCATGGAATGCTCGAAAAATTTCTCGAAGGAATG
131 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * *
27129634 GATTGTGTTGAATACTCTACA-
196 GATCGTCTTGAATACTTTA-AG
* * *
27129655 GAACCGAAGTTATAAAACAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCCTCCAAGAACCAAGA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* * * * *
27129720 GAGAAATAATTCTCACATAAATATGTTTTTAATTAAAAGACCAAAAGTTGTTTACAAAACGACAA
66 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * * * *
27129785 GCTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTACTCGAAGGAATG
131 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
*
27129850 GATCATCTTGAATAC-TTAAG
196 GATCGTCTTGAATACTTTAAG
* * * * * * *
27129870 GAACCAAAGATATAAAAGAGCTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCACGAACCAAGA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* * * * ** *
27129935 GAAAAACAATTCTGACATAAATAAGTTTTTAATTTAAAGTTCAAAATTTGTTTACAAAATGACAA
66 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
** * * ** * ** *
27130000 ACTATTTAGACCAAATGATATGATTTACTGAGCATGTTATGTTCGAAAAATTCCTTAAAGGAATC
131 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
*
27130065 GATTGTCTTGAATACTTTAAG
196 GATCGTCTTGAATACTTTAAG
* * *
27130086 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAAA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* * *
27130151 GAGAAACAATTCTCATGTAAATAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
66 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * * *
27130216 ACTATTTAGACCAAATGATGCGATTTCTCG-GGATTGGAATGGTCAAAAAATTGCTCGAAGGAAT
131 ACTATTTAGACCAAATGATGCGATTTCCCGAGCA-TGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * *
27130280 GGATCGTCTTAAATACATTGAG
195 GGATCGTCTTGAATACTTTAAG
** * * * *
27130302 GAATTGAAGTTATAAAAGAACTCGTAGAAGTTTGACAAGTTC-AGAAGTTTGTCCAAGAACAAAA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAG
* * * * * *
27130366 AGAGAAAACAATTCTCATGTAAACAAATTTTTAATTCAAAGACAAAAACTTGTTTCCAAAATGAC
65 AGAG-AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
* * * *
27130431 AAACTATTTAGACCAAATGATGCAATTTCTCGAG-ATTGGAAT-TGTCG-AAAATTGCTCAAATG
129 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCA-TGGAATGT-TCGAAAAATTGCTCGAAGG
* *
27130493 AATGGATCGTCTTGAACACTTTAAT
192 AATGGATCGTCTTGAATACTTTAAG
* * * * * *
27130518 GAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGACAAGTTTGGAAGTTCGTGCTAGAACCAAAA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* * * * * *
27130583 GTGAAAAAATTCTCACGTAAATAATTTTTTAATTTAAAGACCAAAACTTGTTTACAAAGTGACAA
66 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * * *
27130648 ACTAATTAGACCAAATGATTCGATTTCCCGAGCATGGAATGTTCGGAAAATTTCTCGTAAGGAAT
131 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGAAT
* * *
27130713 GGATAGTCTTGCATACTCTAAG
195 GGATCGTCTTGAATACTTTAAG
* * * * * *
27130735 AAACCGAAGTTATAAAAGAAATCATAAAAGTGTGACAAGTTCGGAAGTTCGTCCAAGATCCAAGA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* *
27130800 GA-AAGATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTACAAAATGACA
66 GAGAA-ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * * *
27130864 AACTATTTAGACCAAATGATGTGATTTCCTGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAAT
130 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
**
27130929 GGATCAACTTGAATACTTTAAG
195 GGATCGTCTTGAATACTTTAAG
* * * * * * ** *
27130951 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAACTTTGAT-AAAAAATAAAA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCG-TCCAAGAACCAAG
* * *
27131015 AGAGAAACAATTCTCACATCAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
65 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
** * * *
27131080 AACTATTTAGACCAAATGATGTAATTTCCCGAGCATCGAATGATCGAAGAATTGCTCGAAGGAAT
130 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* *
27131145 GGATCATCTTGAATACTATAAG
195 GGATCGTCTTGAATACTTTAAG
* * * * *
27131167 GAACCGAAATGATAAAAGAACTTGTAAAAGTTTGACCAGTTC-AGAAGTTCGTCCAAGAATCAAG
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAG
** ** * *
27131231 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTGAAGACCAAAAGTTGAATACAATATTACA
65 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * * *
27131296 AACTATTTAAACCAAATGATGCAATTTCCTC-AGCATGGAATGTTCGGAAAATTTCTCGAAGGAA
130 AACTATTTAGACCAAATGATGCGATTTCC-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
27131360 TGGATCGTCTTGAATACTTTAAG
194 TGGATCGTCTTGAATACTTTAAG
* * * * * * * *
27131383 GAACCGAAGTTATTAAAGAACTCATAAAAGTTTGACTAGTTCGGAAGTTAGTCCTAGAACTAAAA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* * * *
27131448 GAGAAAAAAATCTCACGTAAATAAGTTTTTAATTCAAAGACCACAACTTGTTTACAAAATGACAA
66 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * * *
27131513 ATTATTTAGACCAAATGATGCAATTTCCCAAGCATGGAATGTTCGAAAAATTTCTCGTAA-G-AT
131 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGAAT
*
27131576 --A-C-TC-T-AAGA----AA-
195 GGATCGTCTTGAATACTTTAAG
* * ** * *
27131587 -TA--GAAGTTATAAAAGAAATCGTAAAAGTCCGACAAGTTC-AGAAGTTCATCCAAGATCCAAG
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAG
* * * * *
27131648 AGAAAAACAATTCTCACGTAAACAAGTTTTTAATTCAAAGATCAAAAATTGTTTAGAAAATGACA
65 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * * * * * **
27131713 AACTATTTAGACCAAAT-ATGCTATTTTCTGAGCATTGTATGTT-TAGAAAATTTTTCGAAGGAA
130 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAA
*
27131776 TGGATCATCTTGAATACTTTAAG
194 TGGATCGTCTTGAATACTTTAAG
* * **
27131799 GAACCAAAGTTATAAAAGAACGT-GTAAAAGTTTGGCAAGTTC-AGAAGTTCGTCCAAGAAAAAA
1 GAACCGAAGTTATAAAAGAAC-TCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAA
* * * * *
27131862 AAGAGAAACAATTCTCATGTAAATAAGTTTCTAATTCAAAAACCAAAAGTTGCTTACAAAATGAC
64 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
*
27131927 AAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
129 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* *
27131992 TGGGTTGTCTTGAATACTTTAAG
194 TGGATCGTCTTGAATACTTTAAG
* * * * * * *
27132015 GAACCCAAGTTGTTAAAGAACTCATAAAAGTTTGAAAAATTC-AGAAGTTCGTCTAAGAACCAAG
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAG
* * *
27132079 AGAGAAACAATTTTCACGTAAATAAGTTTTTAATTCGAAGACCAAAAGTTGTTTAAAAAATGACA
65 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * ** * * * * *
27132144 AACTATTTAAACCAAATGGTGCGATTTATCGAGCATGGAATGTTTGGAATATTTCTCAAAGGAAT
130 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
27132209 GGATCGTCTTGAATACTTTAAG
195 GGATCGTCTTGAATACTTTAAG
* *
27132231 GAACCGAAGTTATAAAAGAAGTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAA-A
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* * * *
27132295 AAGGAAACAATTCTCACGTAAATAAGTTTTTAGTTCAAAGACCAATAGTTCTTTACAAAATGACA
66 GA-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * * * * * *
27132360 AACTATGTAGACCAAATGATTCGATTTCCCGATCATGGAATTTTCAAAAAATTTCTCAAAGGAAT
130 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * *
27132425 GGATTGTGTTTAATACTTTAAG
195 GGATCGTCTTGAATACTTTAAG
* * * **
27132447 GAACCGAAGTTATAAAAAAACTTGTAAAAGTTTGAGAAGTTCGAAAGTTCACCCAAGAACCAAGA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* * * * * *
27132512 GATAAACAATTCTCACATAAATATGTTTTTAATTAAAAGATCAAAAGTTGGTTACAAAATGACAA
66 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* *
27132577 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAGAAATTGCTCGAATGAATG
131 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * * *
27132642 GGTCATTTTAAATACATTAAG
196 GATCGTCTTGAATACTTTAAG
* * * * * * *
27132663 GAACTGAAGTTATAAAAGAATTCATAAAAGTTTGACAAGTTCGGAAGTTTGTCCAAGAACAAAAA
1 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* *
27132728 GATAAACAATTCCCACGTAAAT
66 GAGAAACAATTCTCACGTAAAT
27132750 TGATGTGAGC
Statistics
Matches: 3375, Mismatches: 523, Indels: 118
0.84 0.13 0.03
Matches are distributed among these distances:
199 3 0.00
200 31 0.01
201 120 0.04
203 2 0.00
204 1 0.00
205 4 0.00
206 1 0.00
207 3 0.00
209 3 0.00
210 1 0.00
211 4 0.00
212 1 0.00
213 40 0.01
214 152 0.05
215 547 0.16
216 2071 0.61
217 364 0.11
218 27 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
GATCGTCTTGAATACTTTAAG
Found at i:27134330 original size:2 final size:2
Alignment explanation
Indices: 27134317--27134353 Score: 65
Period size: 2 Copynumber: 18.0 Consensus size: 2
27134307 TAATATCAAA
27134317 AT AT AGT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27134354 TACAACCAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 32 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:27143925 original size:216 final size:216
Alignment explanation
Indices: 27143271--27173119 Score: 31618
Period size: 216 Copynumber: 139.7 Consensus size: 216
27143261 AGCTCGCATC
* * * * * ** *
27143271 AATACATTAAGGAACCAAAGATATAAAAGAGCTCGTAAAATTTTGACAAGTTCAAAAGTTTGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
** * * * * *
27143336 AAGAAAAAAAATAGAAGCAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACTTGTTT-
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
27143400 CGAAAATGACAAACTATTTAGACCAAATGATGAGA-TTTCCCAGGATTGGAATGGTCG--AAATT
131 C-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATT
* * ** *
27143462 ACTTGAAGGAATACATAGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * *
27143485 AACACTTTAAGGAACCGAAGTTATCAAAAGAACTCATAAAAGTTTGACATGTTCGAAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27143550 CAATG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAG-CCAAAAAAATTG
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC--AAAAGTTG
* * * * * *
27143613 TTTACAAAAAGACAAACTATATAGAACAAATGATTCGA-TTTCTTGAGCATGGAATGCTCGAAAA
127 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAA
* * * *
27143677 ATTTCTCGAAGGAATGGATTGTGTTA
191 ATTGCTCGAAGGAATGGATCGTCTTG
* * * ** * * * *
27143703 AATACTTTACGGAACCGAAGTTGTACAACTATTCATAAAAGTTTAACAAGTTTGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
** * *
27143768 AAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * * *
27143833 -AGAAGTGCCAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTTGAAAAATTG
131 CA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27143897 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * *
27143919 AATACTTGAAGGAACTGACGATATAAAA-AATCTTGTAAAAGTTTAACAAGTTCGGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAA-CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * * ** *
27143983 CAAGAACCAAGAGAGAAACAATTCTCATGTAAATGAGTTTTTAATTTAAAGTTCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
** * * *
27144048 ACAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTCCGAGCATGTAATGCTCGAAAAATTC
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
* *
27144112 CTCGAAGGAATTGATTGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * **
27144134 AATGCTTTAAGGAACCGAAGTTATAAAAGAA-TCGTAAAAGTTTAACAAGTTCGAAAGTTTATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * * ** *
27144198 TAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATTCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* ** * * * *
27144263 AAAAATGACAAACTATTTAGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCGAAAAATTG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATTG
* *
27144326 CTCGAAGAAATGGATCATCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * ** *
27144348 AATACTTTAAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27144413 AAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
27144478 CAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27144543 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * **
27144564 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTATGACAAATTCATAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27144628 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTGAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27144693 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTCCCGAACATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27144758 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * **
27144780 AATATTTTAAGGAATC-AATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAAT
1 AATACTTTAAGGAACCGAA-GTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT
* * *
27144843 CCAAGGACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTT
64 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * * *
27144908 TAAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAATATT
129 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27144973 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * **
27144996 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * *
27145061 AAGAACCAAGAGAAAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27145125 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* * *
27145189 TCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27145203 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * *
27145267 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27145332 -CGAAAATGACAAACTATTTAGACCAAATGATGAGA-TTTCCCAGGATTGGAATGGTCG--AAAT
130 AC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAAT
* * * *
27145393 TACTTGAAGGAATGCATAGTCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* * * *
27145417 AACACTTTAAGGAACCGAAGTTATCAAAAGAACTCATAAAAGTTTGACAAGTTCAGAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * * * *
27145482 CAATG-ACCAAGAGGGAAAGAA-TCTCACGTAAATAAGTTTTTAATTAAAAGACAAAAAATTTGT
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGT
* * ** *
27145545 TTACAAAATGACAAACTATATAGACCAAATGATTCGA-TTTCTTAAGCATGGAATGCTCGAAAAA
128 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAA
* * * *
27145609 TTTCTCGAAGGAATGGATTGTGTTA
192 TTGCTCGAAGGAATGGATCGTCTTG
* * * ** * *
27145634 AATACTTTACGGAACCGAAGTTGTACAACTATTCATAAAAGTTTGACAAGTAT-GGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTC
** * *
27145698 CAAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * *
27145763 A-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTTGGAAAATT
130 ACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27145827 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* ** * * *
27145850 AATACTTGAAGGAATTGACGATATAAAA-AA-TC--------TTG-TAA-TTCGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * ** *
27145903 AAGAACCAAGAGAGAAACAATTCTCATGTAAATGAGTTTTTAATTTAAAGTTCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * * *
27145968 CAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTCCGAGCATGTAATGCTCAAAAAATTCC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* * *
27146032 TCGAAGGAGTTGATTGTCTTG
196 TCGAAGGAATGGATCGTCTTG
* * * ** *
27146053 AATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTTATTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * ** *
27146118 AAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATTCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * * * *
27146183 CAAAATGAGAAACTATTTAGATTC--AGGATGCGA-TTTCCCAGGATTGGAAAGGTCGAAAAATT
131 CAAAATGACAAACTATTTAGA-CCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATT
* * *
27146245 GCTCGAAGAAATGGATCATCCTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * ** *
27146268 AATTCTTTAAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27146333 AAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * *
27146398 CAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTTGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27146463 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * *
27146484 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * * *
27146548 CAAGAACCAAGGGAAAAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTT
65 CAAGAACCAAGAG-AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* ** * * * * *
27146613 TA-AAAATGAAAAACTATTTAGACCAAATGATGTAAATTACCGATCATGGAATGTTTG-GAAATT
129 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27146676 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * * * **
27146699 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27146763 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27146828 A-AAAAGTGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATT
130 ACAAAA-TGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27146892 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* ** * * **
27146915 AATACTTTATGGAATAGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27146980 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27147044 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27147108 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27147122 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * *
27147186 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
27147251 -CGAAAATGACAAACTATTTAGTCCAAATGATGAGATTTCCCAAG-ATTGGAATGGTCG--AAAT
130 AC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAAT
* * * *
27147312 TACTTGAAGGAATGCATAGTCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* * *
27147336 AACACTTTAAGGAACCGAAGTTATCAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27147401 CAATG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTT-ATTCAAAAGACAAAAAAGTTG
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC-AAAGAC-CAAAAGTTG
* * * *
27147464 TTTACAAAATGACAAACTATATAGACCAAATGATTCGA-TTTCTTGAGCATGGAATGCTCGAAAA
127 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAA
* * * *
27147528 ATTTCTCGAAGGAATGGATTGTGTTA
191 ATTGCTCGAAGGAATGGATCGTCTTG
* * * ** * *
27147554 AATACTTTACGGAACCGAAGTTGTACAACTATTCATAAAAGTTTGACAAGTAT-GGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTC
** * *
27147618 CAAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
27147683 A-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTCAAAAAATT
130 ACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27147747 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* ** * * *
27147770 AATACTTGAAGGAATTGACGATATAAAA-AA-TC--------TTG-TAA-TTCGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * ** *
27147823 AAGAACCAAGAGAGAAACAATTCTCATG-AATATGAGTTTTTAATTTAAAGTTCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAA-ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
** * * ** *
27147887 ACAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTCCGAGCATGTAATGCTCGTGAAATTC
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
* *
27147951 CTCGAAGGAATTGATTGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * **
27147973 AATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTTAT-C
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * ** *
27148037 AAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATTCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * * *
27148102 CAAAATGACAAACTATTTAGATTC--AGGATGCGA-TTTCCCAGGATTGGAAAGGTCGAAAAATT
131 CAAAATGACAAACTATTTAGA-CCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATT
* * *
27148164 GCTCGAAGAAATGGATCATCCTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * ** *
27148187 AATTCTTTAAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27148252 AAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
27148317 CAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27148382 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * *
27148403 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * * *
27148467 CAAGAACCAAGGGAAAAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTT
65 CAAGAACCAAGAG-AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * * * *
27148532 TA-AAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTG-GAAATT
129 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27148595 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * * * **
27148618 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27148682 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27148747 A-AAAAGTGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATT
130 ACAAAA-TGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27148811 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * **
27148834 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27148899 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27148963 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27149027 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27149041 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * * ** * *
27149105 CAAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATGCAAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* ** * * * *
27149170 ACAAAATGACAAACTATTTTGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCG-AAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATT
* *
27149232 GCTCGAAGAAATGGATCATCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27149255 AATACTTT-AGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27149319 AAG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
27149383 CAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27149448 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * * *
27149469 AATA-TTGTTAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27149533 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * *
27149598 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTTT-CGATCATGGAATGTTTGGAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGC-GATTTTCCGAGCATGGAATGTTCGAAAAATT
27149662 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * * * **
27149685 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27149749 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27149814 A-AAAATGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27149878 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * **
27149900 AATACTTTATGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * *
27149965 AAGAACAAAAATAGAAACAATTCTCACATAAATGAG-TTTTAATTCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * * *
27150029 CAAAATGACAAACTATTTAGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCGAAAAATTG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATTG
* * *
27150092 CTCGAAGAAATGGATCATCCTG
195 CTCGAAGGAATGGATCGTCTTG
* * * ** *
27150114 AAT--TTTAAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27150177 AAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
27150242 CAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27150307 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * *
27150328 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27150392 CAAGAACCAAGAGGGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * *
27150457 A-AAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTG-GAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27150520 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27150542 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27150606 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27150671 A-AAAAGTGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATT
130 ACAAAA-TGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27150735 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * **
27150758 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27150823 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * *
27150887 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTC-AAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27150950 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27150964 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * * ** * *
27151028 CAAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATGCAAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* ** * * * * *
27151093 ACAAAATGACAAACTATTTTGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCGGAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATT
* *
27151156 GCTCGAAGAAATGGATCATCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * ** *
27151179 AATACTTTGAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27151244 AAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
27151309 CAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27151374 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * *
27151395 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27151459 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27151524 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27151589 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27151611 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27151675 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27151740 A-AAAAGTGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATT
130 ACAAAA-TGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27151804 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * **
27151827 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27151892 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27151956 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27152020 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27152034 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * *
27152098 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27152163 -CGAAAATGACAAACTATTTAGACCAAATGATGAGA-TTTCCCAGGATTGGAATGGTCG--AAAT
130 AC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAAT
* * * *
27152224 TACTTGAAGGAATGCATAGTCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* * *
27152248 AACACTTTAAGGAACCGAAGTTATCAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27152313 CAATG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTT-ATTAAAAGACAAAAAGTTGTT
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * *
27152376 TACAAAATGACAAACTATATAGACCAAATGATTCGA-TTTCTTGAGCATGGAATGCTCGAAAAAT
129 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAAT
* * * *
27152440 TTCTCGAAGGAATGGATTGTGTTA
193 TGCTCGAAGGAATGGATCGTCTTG
* * * ** * *
27152464 AATACTTTACGGAACCGAAGTTGTACAACTATTCATAAAAGTTTGACAAGTAT-GGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTC
** * *
27152528 CAAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27152593 A-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTCGAAAAATT
130 ACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27152657 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* ** * * *
27152680 AATACTTGAAGGAATTGACGATATAAAA-AA-TC--------TTG-TAA-TTCGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * ** *
27152733 AAGAACCAAGAGAGAAACAATTCTCATGTATATGAGTTTTTAATTTAAAGTTCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * *
27152798 CAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTCCGAGCATGTAATGCTCGAAAAATTCC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27152862 TCGAAGGAATTGATTGTCTTG
196 TCGAAGGAATGGATCGTCTTG
* * * **
27152883 AATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTTATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * ** * *
27152948 AAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATGCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* ** * * * * *
27153013 CAAAATGACAAACTATTTTGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCGGAAAATTG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATTG
* * *
27153076 CTCGAAGAAATGGATCATCCTG
195 CTCGAAGGAATGGATCGTCTTG
* * * ** *
27153098 -A-A-TTTAAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27153160 AAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * *
27153225 CAAAATGACAAACTATATAGACCAAATGATGCGA-TTTCCGAGCTTGGAATGTTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27153289 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * *
27153310 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27153374 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27153439 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27153504 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27153526 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27153590 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
27153655 AAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27153720 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * **
27153742 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27153807 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27153871 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27153935 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27153949 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * *
27154013 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27154078 ACAAAATGACAAACTATTTAGACC-AATGATGAGA-TTTCCCAGGATTGGAATGGTCG--AAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATT
* *
27154139 GCTTGAAGGAATGGATAGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * *
27154162 AACACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27154227 AAG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
27154291 CAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27154356 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * *
27154377 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27154441 CAAGAACCAAGAGCGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * * * *
27154506 AAAAAATGAAAAACAATTTAGACCAAATGATGCAAATTACAGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27154571 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27154593 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27154657 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
27154722 AAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27154787 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * **
27154809 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27154874 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27154938 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27155002 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27155016 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * *
27155080 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27155145 -CGAAAATGACAAACTATTTAGACCAAATGATGAGA-TTTCCCAGGATTGGAATGGTCG--AAAT
130 AC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAAT
* * * *
27155206 TACTTGAAGGAATGCATAGTCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* * *
27155230 AACACTTTAAGGAACCGAAGTTATCAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27155295 CAATG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACGAAAAAGTTGT
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGT
* * * * *
27155359 TTACAAAATGACAAACTATATAGAGACCAAAAGATTCGA-TTTCTTGAGCATGGAATGCTCGAAA
128 TTACAAAATGACAAACTAT-T-TAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAA
* * * *
27155423 AATTTCTCGAAGGAATGGATTGTGTTA
190 AATTGCTCGAAGGAATGGATCGTCTTG
* * * ** * *
27155450 AATACTTTACGGAACCGAAGTTGTACAACTATTCATAAAAGTTTGACAAGTAT-GGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTC
** * *
27155514 CAAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27155579 A-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTCGAAAAATT
130 ACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27155643 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* ** * * *
27155666 AATACTTGAAGGAATTGACGATATAAAA-AA-TC--------TTG-TAA-TTCGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * ** *
27155719 AAGAACCAAGAGAGAAACAATTCTCATGTATATGAGTTTTTAATTTAAAGTTCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * *
27155784 CAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTCCGAGCATGTAATGCTCGAAAAATTCC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27155848 TCGAAGGAATTGATTGTCTTG
196 TCGAAGGAATGGATCGTCTTG
* * * **
27155869 AATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTTATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * ** *
27155934 AAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATTCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * * * *
27155999 CAAAATGACAAACTATTTAGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCGGAAAATTG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATTG
* * *
27156062 CTCGAAGAAATGGATCATCCTG
195 CTCGAAGGAATGGATCGTCTTG
* * * ** *
27156084 AAT--TTTAAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27156147 AAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
27156212 CAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27156277 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * *
27156298 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27156362 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27156427 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27156492 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27156514 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27156578 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27156643 A-AAAAGTGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATT
130 ACAAAA-TGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27156707 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * **
27156730 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27156795 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27156859 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27156923 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27156937 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAACTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * *
27157001 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27157066 -CGAAAATGACAAACTATTTAGACCAAATGATGAGA-TTTCCCAGGATTGGAATGGTCG--AAAT
130 AC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAAT
* * * *
27157127 TACTTGAAGGAATGCATAGTCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* * *
27157151 AACACTTTAAGGAACCGAAGTTATCAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27157216 CAATG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTT-ATTAAAAGACGAAAAAGTTGT
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGT
* * * *
27157279 TTACAAAATGACAAACTATATAGACCAAATGATTCGA-TTTCTTGAGCATGGAATGCTCGAAAAA
128 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAA
* * * *
27157343 TTTCTCGAAGGAATGGATTGTGTTA
192 TTGCTCGAAGGAATGGATCGTCTTG
* * * ** * *
27157368 AATACTTTACGGAACCGAAGTTGTACAACTATTCATAAAAGTTTGACAAGTAT-GGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTC
** * *
27157432 CAAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27157497 ---AAGTGACAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTCGAAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27157559 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* ** * * *
27157581 AATACTTGAAGGAATTGACGATATAAAA-AA-TC--------TTG-TAA-TTCGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * ** *
27157634 AAGAACCAAGAGAGAAACAATTCTCATGTATATGAGTTTTTAATTTAAAGTTCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * *
27157699 CAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTCCGAGCATGTAATGCTCGAAAAATTCC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27157763 TCGAAGGAATTGATTGTCTTG
196 TCGAAGGAATGGATCGTCTTG
* * * **
27157784 AATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTTATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * * *
27157849 AAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTTCAATTCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* ** * * * * *
27157914 CAAAATGACAAACTATTTTGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCGGAAAATTG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATTG
* * *
27157977 CTCGAAGAAATGGATCATCCTG
195 CTCGAAGGAATGGATCGTCTTG
* * * ** *
27157999 -A-A-TTTAAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27158061 AAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
27158126 CAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27158191 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * *
27158212 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27158276 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27158341 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27158406 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27158428 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27158492 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27158557 A-AAAAGTGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATT
130 ACAAAA-TGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27158621 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * **
27158644 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27158709 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27158773 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27158837 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27158851 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * *
27158915 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * *
27158980 ACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCCCAGGATTGGAATGGTCG--AAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATT
* * *
27159042 ACTCGAAGGAATGCAT-ATCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * *
27159064 AACACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27159129 AAG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * *
27159193 CAAAATGACAAACTATATAGACCAAATGATGCGA-TTTCTCGAGCTTGGAATGTTCGAAAAATAG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATTG
* *
27159257 CTCGAAGGAATGGATCATCTCG
195 CTCGAAGGAATGGATCGTCTTG
* * * *
27159279 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27159343 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27159408 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27159473 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27159495 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27159559 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27159624 A-AAAAGTGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATT
130 ACAAAA-TGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27159688 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * **
27159711 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27159776 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27159840 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27159904 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27159918 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * *
27159982 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27160047 -CGAAAATGACAAACTATTTAGACCAAATGATGAGA-TTTCCCAGGATTGGAATGGTC--AAAAT
130 AC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAAT
* * * *
27160108 TACTTGAAGGAATGCATAGTCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* * * *
27160132 AACACTTTAAGGAATCGAAGTTATCAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27160197 CAATG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACACAAAAGTTGT
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGT
* * * * *
27160261 TTACAAAATGACAAACTATATAGACCAAAAGATTCGA-TTTCTTGAGCATGGAATGCTCGAAAAA
128 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAA
* * * *
27160325 TTTCTCGAAGGAATGGATTGTGTTA
192 TTGCTCGAAGGAATGGATCGTCTTG
* * * * ** * *
27160350 AATACTTTACGGAATCGAAGTTGTACAACTATTCATAAAAGTTTGACAAGTAT-GGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTC
** * *
27160414 CAAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
27160479 A-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTCAAAAAATT
130 ACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27160543 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* ** * * *
27160566 AATACTTGAAGGAATTGACGATATAAAA-AA-TC--------TTG-TAA-TTCGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * ** *
27160619 AAGAACCAAGAGAGAAACAATTCTCATGTATATGAGTTTTTAATTTAAAGTTCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * * *
27160684 CAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTTCGAGCATGCAATGCTCGAAAAATTCC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27160748 TCGAAGGAATTGATTGTCTTG
196 TCGAAGGAATGGATCGTCTTG
* * * **
27160769 AATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTTATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * ** * *
27160834 AAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATGCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * ** * * * *
27160899 CAAAATGACAAATTATTTTGA-TTAATGATGCGATTTCCCTAGCTTGGAATGTTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27160963 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * *
27160984 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27161048 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27161113 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27161178 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27161200 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27161264 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * *
27161329 AAAAAATGAAAAACTATTTAGATCAAATGATACGAATTACCGAGCATGGAATGTTCGAAATATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27161394 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * **
27161416 AATACTTTAAGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27161481 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27161545 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27161609 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27161623 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * *
27161687 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * *
27161752 -CGAAAATGACAAACTATTTAGACCAAATGATGAGATTTTCC-AGGATTGGAATGGTCG--AAAT
130 AC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAAT
* * * *
27161813 TACTTGAAGGAATGCATAGTCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* * *
27161837 AACACTTTAAGGAACCGAAGTTATCAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27161902 CAATG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACGAAAAAGTTGT
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGT
* * * * *
27161966 TTACAAAATGACAAACTATATAGAGACCAAAAGATTCGA-TTTCTTGAGCATGGAATGCTCGAAA
128 TTACAAAATGACAAACTAT-T-TAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAA
* * * *
27162030 AATTTCTCGAAGGAATGGATTGTGTTA
190 AATTGCTCGAAGGAATGGATCGTCTTG
* * * ** * *
27162057 AATACTTTACGGAACCGAAGTTGTACAACTATTCATAAAAGTTTGACAAGTAT-GGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTC
** * *
27162121 CAAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27162186 A-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTCGAAAAATT
130 ACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27162250 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* ** * * *
27162273 AATACTTGAAGGAATTGACGATATAAAA-AA-TC--------TTG-TAA-TTCGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * ** * ** *
27162326 AAGAACCAAGAGAGAAACAATTCTCATGTATATGTGTTTTTAATTTAAAGTTCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * * *
27162391 CAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTCCGAGCATGTAATGCTCGAAACATTCC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27162455 TCGAAGGAATTGATTGTCTTG
196 TCGAAGGAATGGATCGTCTTG
* * * **
27162476 AATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTTATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * ** *
27162541 AAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATTCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * * * *
27162606 CAAAATGACAAACTATTTAGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCGGAAAATTG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATTG
* * *
27162669 CTCGAAGAAATGGATCATCCTG
195 CTCGAAGGAATGGATCGTCTTG
* * * ** *
27162691 AATACTTTAAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
*
27162756 AAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-ACCTAAAAGTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTT
* * * * *
27162820 ACAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTTGAAAAATAG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
* *
27162885 CTCGAAGGAATGGATCATCTCG
195 CTCGAAGGAATGGATCGTCTTG
* * * * *
27162907 AATA-TTGTAAGGAATCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27162971 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27163036 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27163101 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27163123 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* **
27163187 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGAAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27163252 A-AAAAGTGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATT
130 ACAAAA-TGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27163316 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * **
27163339 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27163404 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27163468 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27163532 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * * * *
27163546 AATACATTAAGGAACCAAAGTTATAAAAGAACTTGTAAAGGTTTGA-ATAGTTTGGAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA-AGTTCGGAAGTTCGTC
* * *
27163610 CAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27163675 ACAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTCGAAAAATAG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
* *
27163740 CTCGAAGGAATGGATCATCTCG
195 CTCGAAGGAATGGATCGTCTTG
* * * * *
27163762 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTTGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27163826 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27163891 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
*
27163956 CTCGAAGGAATGGATCATCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27163978 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* **
27164042 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGAAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27164107 A-AAAAGTGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATT
130 ACAAAA-TGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27164171 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * **
27164194 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27164259 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27164323 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27164387 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27164401 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * *
27164465 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27164530 -CGAAAATGACAAACTATTTAGACCAAATGATGAGA-TTTCCCAGGATTGGAATGGTC--AAAAT
130 AC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAAT
* * * *
27164591 TACTTGAAGGAATGCATAGTCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* * * *
27164615 AACACTTTAAGGAATCGAAGTTATCAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27164680 CAATG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACACAAAAGTTGT
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGT
* * * * *
27164744 TTACAAAATGACAAACTATATAGACCAAAAGATTCGA-TTTCTTGAGCATGGAATGCTCGAAAAA
128 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAA
* * * *
27164808 TTTCTCGAAGGAATGGATTGTGTTA
192 TTGCTCGAAGGAATGGATCGTCTTG
* * * * ** * *
27164833 AATACTTTACGGAATCGAAGTTGTACAACTATTCATAAAAGTTTGACAAGTAT-GGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTC
** * *
27164897 CAAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27164962 A-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTC-AAAAATT
130 ACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27165025 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* ** * * *
27165048 AATACTTGAAGGAATTGACGATATAAAA-AA-TC--------TTG-TAA-TTCGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * ** *
27165101 AAGAACCAAGAGAGAAACAATTCTCATGTATATGAGTTTTTAATTTAAAGTTCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * * *
27165166 CAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTTCGAGCATGCAATGCTCGAAAAATTCC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27165230 TCGAAGGAATTGATTGTCTTG
196 TCGAAGGAATGGATCGTCTTG
* * * **
27165251 AATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTTATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * ** * *
27165316 AAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATGCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * ** * * * *
27165381 CAAAATGACAAATTATTTTGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCGAAAAATTG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATTG
* *
27165444 CTCGAAGAAATGGATCATCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * ** * *
27165466 AATACTTTGAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGGTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * *
27165531 AAGAATCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * *
27165596 CAAAATGACAAACTATATAGACCAAATGATGCGA-TTTCTCGAGCTTGGAATGTTCGAAAAATAG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATTG
* *
27165660 CTCGAAGGAATGGATCATCTCG
195 CTCGAAGGAATGGATCGTCTTG
* * ** *
27165682 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAACTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27165746 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27165811 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27165876 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27165898 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27165962 CAAGAACCAAGAGAGAGACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
27166027 AAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27166092 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * **
27166114 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27166179 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * *
27166243 ACACAATGACAAACGATTTAGACCAAATGATGC-AATTTCTCGAGCATTGAATGTTCAAAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27166307 GCTTGAAGG-A---A-----TTA
194 GCTCGAAGGAATGGATCGTCTTG
* * * ** *
27166321 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * *
27166385 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
27166450 -CGAAAATGAAAAACTATTTAGACCAAATGATGAGA-TTTCCCAGGATTGGAATGGTC--AAAAT
130 AC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAAT
* * * *
27166511 TACTTGAAGGAATGCATAGTCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* * * *
27166535 AACACTTTAAGGAATCGAAGTTATCAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27166600 CAATG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACAAAAAGTTGTT
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * *
27166664 TACAAAATGACAAACTATATAGACCAAATGATTCGA-TTTCTTGAGCATGGAATGCTCGAAAAAT
129 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAAT
* * * *
27166728 TTCTCGAAGGAATGGATTGTGTTA
193 TGCTCGAAGGAATGGATCGTCTTG
* * * * *** * *
27166752 AATACTTTACGGAACTGAAGTTGTACACCTATTCATAAAAGTTTGACAAGTAT-GGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTC
** * *
27166816 CAAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27166881 A-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTCGAAAAATT
130 ACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
27166945 GCTCGAAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* ** * * * *
27166968 AATACTTGAAGGAATTGACGATATAAAA-AA-TC--------TTG-TAA-TTTGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * ** * ** *
27167021 AAGAACCAAGAGAGAAACAATTCTCATGTATATGTGTTTTTAATTTAAAGTTCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * * *
27167086 CAAAATGACAAACTATTTAG-CCAAATGAT-ATATTTTCCGAGCATGTAATGCTCGAAACATTCC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27167149 TCGAAGGAATTGATTGTCTTG
196 TCGAAGGAATGGATCGTCTTG
* * * **
27167170 AATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTTATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * ** * *
27167235 AAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATGCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* ** * * * * *
27167300 CAAAATGACAAACTATTTTGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCGGAAAATTG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATTG
* *
27167363 CTCGAAGAAATGGATCATCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * ** *
27167385 AATACTTTAAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * *
27167450 AAGAATCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * *
27167515 CAAAATGGCAAACTATATAGACCAAATGATGCGA-TTTCTCGAGCTTGGAATGTTTGAAAAATAG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATTG
* * *
27167579 CTCGAAGGAATGAATCATCTCG
195 CTCGAAGGAATGGATCGTCTTG
* * ** *
27167601 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAACTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27167665 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27167730 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27167795 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* ** * * * * **
27167817 AATATTTTAAGGAGTCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27167881 CAAGAACCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
27167946 AAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27168011 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * **
27168033 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27168098 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTC--AGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * * *
27168160 ACACAATGACAAACGATTTAGACCAAATGATGCAATTTCTCAAGAGCATTGAATGTTCAAAAAAT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TC-CGAGCATGGAATGTTCGAAAAAT
* *
27168225 TGCTTGAAGG-A---A-----TTA
193 TGCTCGAAGGAATGGATCGTCTTG
* * * ** *
27168240 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * * * ** * * *
27168304 CAAGAACAAAAATAGAAACAATGCTCACATAAATGAGTTTACAATGCAAAGACCAAAACTTATTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* ** * * * * *
27168369 ACAAAATGACAAACTATTTTGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCGGAAAATT
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATT
* *
27168432 GCTCGAAGAAATGGATCATCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * ** * *
27168455 AATACTTTGAGGAGCCAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGGTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * *
27168520 AAGAATCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
27168585 CAAAATGACAAACTATATA-ACCAAATGATGCGATTTCCCGAGCTTGGAATGTTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27168649 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * * *
27168670 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTCAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27168734 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27168799 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27168864 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * * **
27168886 ATTATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27168950 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
27169015 AAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27169080 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * **
27169102 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * *
27169167 AAGAACCAAGAGAGAATCAATTCTCATGTAAGTAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
* * * * * *
27169231 ACACAATGACAAACGATTTAGACCAAATGATGCAATTTCTCGAGCATTGAAGCATTGAATTTTCA
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TC---C---G-AGCATGGAATGTTCG
* * *
27169296 AAAAATTACTTGAAGG-A---A-----TTA
187 AAAAATTGCTCGAAGGAATGGATCGTCTTG
* * * ** **
27169317 AATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAGTTTTTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * * *
27169381 CAAGAACAAAAATAGAAACAATTCTCACGTAAATAAGTTTTTTATTCGAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27169446 -CGAAAATGACAAACTATTTAGACCAAATGATGAGATTTCCCAAG-ATTGGAATGGTCG--AAAT
130 AC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAAT
* * * *
27169507 TACTTGAAGGAATGCATAGTCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* * * *
27169531 AACACTTTAAGGAACCGAAGTTATCAAAAGAACTCATAAAAGTTTGACAAGTTCGGAATTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27169596 CAACG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATT-AAACGACAAAAAAAGTT
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GAC--CAAAAGTT
* * * *
27169659 GTTTACAAAATGACAAACTATATAGACCAAATGATTCGA-TTTCTTGAGCATGGAATGCTCGAAA
126 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAA
* * * *
27169723 AATTTCTCGAAGGAATGGATTGTGTTAA
190 AATTGCTCGAAGGAATGGATCGTCTT-G
* * * ** * *
27169751 AATACTTTATGGAACCGAAGTTGTACAACTATTCATAAAAGTTTGACAAGTAT-GGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTC
** * *
27169815 CAAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
27169880 A-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTCGAAAAATT
130 ACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATT
*
27169944 GCTCGGAGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCGTCTTG
* ** * * *
27169967 AATACTTGAAGGAATTGACGATATAAAA-AA-TC--------TTG-TAA-TTCGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * ** * *
27170020 AAGAACCAAGAGAGAAACAATTCTCATGTATATGAGTTTTTAATTTAGAGTTCAAAATTTGTTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* ** * * *
27170085 CAAAATGACAAACTATTTAGACGAAATGAT-ATATTTTCCGAGCATGTAATGCTCGAAAAATTCC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27170149 TCGAA-GAATTGATTGTCTTG
196 TCGAAGGAATGGATCGTCTTG
* * * * **
27170169 AATGCTTTAAGGAACCGAAGTTATAAAAGAACCCGTAAAAGTTTAACAAGTTCGAAAGTTTATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * ** *
27170234 AAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTAGAATTCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* ** * * * * *
27170299 CAAAATAACAAACTATTTAGA-TTAATGATGCGA-TTTCCCAGGATTGGAAAGGTCGGAAAATTG
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAATTG
* *
27170362 CTCGAAGAAATGGATCATCTTG
195 CTCGAAGGAATGGATCGTCTTG
* ** * ** * *
27170384 AATACTTTAAGGAGCAAAAGTTATAAAAAGAACTTGTAAAAGTTTGATTAGTTCGAAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * * *
27170449 AAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * *
27170514 ACAAAATGACAAACTATATAGACCAAATGATGCGA-TTTCTCGAGCTTGGAATGTTCGAAAAATA
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATT
* *
27170578 GCTCGAAGGAATGGATCATCTCG
194 GCTCGAAGGAATGGATCGTCTTG
* * * * *
27170601 AATA-TTGTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGATGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27170665 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTGAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27170730 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27170795 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27170817 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
27170881 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
27170946 AAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTACCGAGCATGGAATGTTCGAAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27171011 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * **
27171033 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27171098 AAGAACCCAA-AGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTT
66 AAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTT
* * * * * *
27171161 TACACAATGACAAACGATTTAGACCAAATGATCCAATTTCTCGAGCATTGAAGCATTGAATGCTC
129 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TC---C---G-AGCATGGAATGTTC
* *
27171226 -AAAAATTGCTTGAAGG-A---A-----TTA
186 GAAAAATTGCTCGAAGGAATGGATCGTCTTG
* * * * * ** * *
27171247 AATACATTATGGAACCAAAGTTGTAAAAGAACTCGTAAAATTTTGACCAA-TTCAAAAATTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTC
* * * * *
27171311 CAAGAACAAAAAGTGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
27171376 -CGAAAATGACAAACTATTTAGACCAAATAATGAGATTTCCCAAG-ATTGGAATGGTCG--AAAT
130 AC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA-TGGAATGTTCGAAAAAT
* * * *
27171437 TTCTCAAAGGAATGCATAGTCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* * * *
27171461 AACACTTTAAGGAACCGAAGTTATCAAAAGAGCTCATAAAAGTTTGACAAGTTCGGAAGTTCATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27171526 CAATG-ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACAAAAAAGTTGT
65 CAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGT
* * * * *
27171590 TTACTAAATGACAAACTATATAGACCAAATGATTCGA-TTTCTTGAGCATGGAATGCTCGAAAAA
128 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAA
* * * *
27171654 TTTCTCGAAGGAATGGATTGTGTTA
192 TTGCTCGAAGGAATGGATCGTCTTG
* * ** * * *
27171679 AATACTTTACGGAACCGAAGTTATACAACTATTCATAAAAGTTTGACAAGTAT-GGAAGTTTGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTC
** *
27171743 CAAGAACCAATCGAGAAACAATTCTCACATAAATAAGTTTTTAATT-AAATGACCAAAAGTTGTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCAAAAGTTGTT
* * * *
27171807 TA-AGAAGTGACAAATTATTTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTCGAAAAAT
129 TACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAAT
*
27171871 TGCTCGAAGGAATGGATCGCCTTG
193 TGCTCGAAGGAATGGATCGTCTTG
* ** * * *
27171895 AATACTTGAAGGAATTGACGATATAAAA-AA-TC--------TTG-TAA-TTCGGAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * ** *
27171948 AAGAACCAAGAGAGAAACAATTCTCATGTATATGAG-TTTTAATTTAAAGTTCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** * * *
27172012 CAAAATGACAAACTATTTAGACCAAATGAT-ATATTTTCCGAGCATGTAATGCTCGAAAAATTCC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27172076 TCGAAGGAATTGATTGTCTTG
196 TCGAAGGAATGGATCGTCTTG
* * ** **
27172097 AATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCAAAAGTTTATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * * * ** *
27172162 AAGAACAAAAATAGAAACAATTCTCACATAAATGAGTTTACAATTCAAAGACCAAAACTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* ** * * * *
27172227 CAAAATAACAAACTATTTAGA-TTAATGATGCGA-TTTCTC-AGGATTGGAAAGGTCGGAAAATT
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCA-TGGAATGTTCGAAAAATT
* *
27172289 GCTCGAAGAAATGGATCGTCTGG
194 GCTCGAAGGAATGGATCGTCTTG
* ** * ** *
27172312 AATACTTTAAGGAGCAAAAGTTATAAAAGAACTTGTAAAAGTTTGATTAGTTCGGAAGTTCATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * *
27172377 AAGAACCAAGAGGGAAACAATTTTCACGTAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * *
27172442 CAAAATGACAAACTATATAGACCAAATGATGCGATTTCCCGAGCTTGGAATGCTCGAAAAATAGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
* *
27172507 TCGAAGGAATGGATCATCTCG
196 TCGAAGGAATGGATCGTCTTG
* * * * *
27172528 AATA-TTGTAAGGAACCAAAGTTATAAAATAACTCGTAAAAGTTTGATAAATTCAGAAGTTCGTC
1 AATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27172592 CAAGAACCAAGAGAGAAACAATTTTCACATAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
27172657 AAAAAATGAAAAACTATTTAGACCAAATGATGCAAATTACCGATCATGGAATGTTTGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27172722 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * * * **
27172744 AATATTTTAAGGAATCGATGTTATAAAAAGAACTCGT-AAAGGTTGATAAGTTAGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* * *
27172808 CAAGAACCAAGAGAGAAACAATGCTCACGTAAATAAGTTTTTAATTCAAAAAGCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * *
27172873 AAAAAATGAAAAACTATTTAGATCAAATGATGCGAATTACCAAGCATGGAATGTTCGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTG
27172938 CTCGAAGGAATGGATCGTCTTG
195 CTCGAAGGAATGGATCGTCTTG
* * * * ** **
27172960 AATACTTTATGGAATCGAATTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTAATCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * *
27173025 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTT-ATGTCAAAGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTT
*
27173089 ACACAATGACAAA-TGATTTAGACCAAATGAT
130 ACAAAATGACAAACT-ATTTAGACCAAATGAT
27173120 CCAATTTCTC
Statistics
Matches: 24853, Mismatches: 3972, Indels: 1618
0.82 0.13 0.05
Matches are distributed among these distances:
200 1 0.00
201 67 0.00
202 191 0.01
203 718 0.03
204 850 0.03
205 247 0.01
206 296 0.01
207 2029 0.08
208 99 0.00
209 47 0.00
210 3 0.00
211 5 0.00
212 636 0.03
213 602 0.02
214 1813 0.07
215 4951 0.20
216 10312 0.41
217 1213 0.05
218 336 0.01
219 264 0.01
220 116 0.00
222 1 0.00
223 18 0.00
224 38 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGC
TCGAAGGAATGGATCGTCTTG
Found at i:27173633 original size:216 final size:216
Alignment explanation
Indices: 27173252--27173973 Score: 806
Period size: 216 Copynumber: 3.4 Consensus size: 216
27173242 GAACAAAAGG
* * * * *
27173252 TGAACTAAAAACTTATTTACATGAGAATTATTTCTCTCTTAGTTCATGGACGAACTTCCAAAC-A
1 TGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTA
* * * *
27173316 TGTCAAACTTTTTACGAGTT-TTT-ATAACTTCGGTTCCTTAAAGTGTTCAAG-TCGGAACATTC
66 -GTAAAAC-TTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGAT-GGTACATTC
* * * *
27173378 CTTAGAGCAATTTTTGGAACATTCCATGCTC-GAGAAATCGCATAAATTT-GTCTAAATAGTTTT
128 CTTTGAGCAATTTTTCGAACATTCTATGCTCAG-GAAATCGCAT-CATTTGGTCTAAATAGTTTT
* *
27173441 TCATTTTTTAAACAATTTTTGGTCTT
191 TCATTTTGTAAACAACTTTTGGTCTT
* * *
27173467 TTAATTAAAAACTTATTTACATGAGAATTATTTCTCCCTTGGTTCTTGGAAGAACTTTCGAACTA
1 TGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTA
*
27173532 GTAAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGATGGTTCATTCCTT
66 GTAAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGATGGTACATTCCTT
* *
27173597 TGAGCAATTTTTCGAAAATTCTATGCTCAGGAAATCGCATCATTTGGTCTAAATA-TTTTTGTAT
131 TGAGCAATTTTTCGAACATTCTATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTT-CAT
*
27173661 TTTGTAAACAAGTTTTGGTCTT
195 TTTGTAAACAACTTTTGGTCTT
* * * * * * * *
27173683 GGAATTAAAAACTTAATTACGTGAGAATTGTTTCTCTGTTGGTTCTTGCACA-ACCTTCCGAATT
1 TGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGA-AGAACTTCCGAACT
* * * * * * * * *
27173747 TGTCAAACTTTTACGAGGTCTTTCACAACTTCGATTCC-----GTATTTAAGACGATCCATTGCT
65 AGTAAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGATGGTACATTCCT
* * * * *
27173807 TTGAGCAATTTTTTGAACATT-TCACGATTAGGAAATCGCATCATTTGGTCTAAATAGTTTTACA
130 TTGAGCAATTTTTCGAACATTCT-ATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTTCA
*
27173871 TTTTGTACACAACTTTTGGTCTT
194 TTTTGTAAACAACTTTTGGTCTT
* * * * * *
27173894 TGAATTAAAAACTTATTTACGTGAAAATAATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTT
1 TGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTA
*
27173959 GTAAAACTTTAACGA
66 GTAAAACTTTTACGA
27173974 TCCATTCCTT
Statistics
Matches: 433, Mismatches: 63, Indels: 26
0.83 0.12 0.05
Matches are distributed among these distances:
210 1 0.00
211 154 0.36
212 4 0.01
214 11 0.03
215 73 0.17
216 187 0.43
217 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (216 bp):
TGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTA
GTAAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGATGGTACATTCCTT
TGAGCAATTTTTCGAACATTCTATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATT
TTGTAAACAACTTTTGGTCTT
Found at i:27174773 original size:193 final size:192
Alignment explanation
Indices: 27174516--27174893 Score: 472
Period size: 193 Copynumber: 2.0 Consensus size: 192
27174506 AAAAAACTTA
* * *
27174516 TTTACGTGAGAATTGTTTCTATTGGTTCTAGGACGAACTTCCAAACTTGTCAAAGTTTTACGAGT
1 TTTACGTGAGAATAGTTTCTATTGGTTCTAGGACGAACTTCCAAACTTGTAAAACTTTTACGAGT
** * * *
27174581 TCTTTTATAATTTTGGTTCCTTAAAGTGTTCAAGACAAT-CATTTCCTTCGAGCAATTTTCTGAA
66 TCTTTTATAACATCGGTTCCTTAAAGTATTCAAGACAATCCA-TTCCTTCGAGCAATTTTCCGAA
* *
27174645 CATTTAATGCACGGGAAATCACATCATTTGGTCTAAAAAGTTTTTCA-TTTGTAAACAATTTT
130 CATTCAATGCACGGGAAATCACATCATTTGGTCCAAAAAGTTTTTCATTTTGTAAACAATTTT
* * * * * *
27174707 TTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTTTAAAACTTTTACGA
1 TTTACGTGAGAATAG-TT-TCTATTGGTTCTAGGACGAACTTCCAAACTTGTAAAACTTTTACGA
*** *
27174772 GTTCTTTTATAACATCGGTTCCTTAAAGTATTCAAGATGGTCCATTCCTTCGAGTAATTTTCCGA
64 GTTCTTTTATAACATCGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCCGA
* ** * ** *
27174837 ACATTCCATGGTCGGGAAATCGCATCATTTGGTCCAAGTAGTTTTTTATTTTGTAAA
129 ACATTCAATGCACGGGAAATCACATCATTTGGTCCAAAAAGTTTTTCATTTTGTAAA
27174894 TAAGTTTTGG
Statistics
Matches: 156, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
191 14 0.09
192 2 0.01
193 130 0.83
194 10 0.06
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (192 bp):
TTTACGTGAGAATAGTTTCTATTGGTTCTAGGACGAACTTCCAAACTTGTAAAACTTTTACGAGT
TCTTTTATAACATCGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCCGAAC
ATTCAATGCACGGGAAATCACATCATTTGGTCCAAAAAGTTTTTCATTTTGTAAACAATTTT
Found at i:27175081 original size:216 final size:215
Alignment explanation
Indices: 27174707--27175384 Score: 837
Period size: 216 Copynumber: 3.1 Consensus size: 215
27174697 AAACAATTTT
* *
27174707 TTTACGTGAGAA-TAGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTTTAAAACTTTTACG
1 TTTACGTGAGAATTA-TTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTAAAACTTTTACG
* * * *
27174771 AGTTCTTTTATAACATCGGTTCCTTAAAGTATTCAAGATGGTCCATTCCTTCGAGTAATTTTCCG
65 AGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCG
* * * *
27174836 AACATTCCATGGTCGGGAAATCGCATCATTTGGTCCAAGTAGTTTTTTATTTTGTAAATAAGTTT
130 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA-TAGTTTTTAATTTTGTAAACAAGTTT
27174901 TGGTCTTTGAATTAAAAACTTA
194 TGGTCTTTGAATTAAAAACTTA
* * *
27174923 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCAAACATGTCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTAAAACTTTTACGA
* * * *
27174988 GTTCTTTTATAACTTCGGATCCTTAAAGAATTAAAGATGATCCTTTCCTTCGAGCAATTTTCCGA
66 GTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCGA
* * *
27175053 ACATTCCATGCTCGGGAAATCGCATCATTAT-TTCTAAAAATTTTGTCAATTTT-TAAACAAGTT
131 ACATTCCATGCTCGGGAAATCGCATCATT-TGGTCTAATAGTTTT-T-AATTTTGTAAACAAGTT
* * *
27175116 TTGCTCTTTCAATTAAAAGCTTA
193 TTGGTCTTTGAATTAAAAACTTA
** * * * *
27175139 TTTACGTGAGAATCGTTTCTCCCTTTGTTTTTGGATGAACTTCCGAACTTGTAAAACTTTAACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTAAAACTTTTACGA
* * * * * *
27175204 CTTCTTTTATAACTTC-GATTCCTTCAAGTATTCATGACGATTCATTCCTTCGCAAAAAATTTT-
66 GTTCTTTTATAACTTCGGA-TCCTTAAAGTATTCAAGATGATCCATTCCTTCG--AGAAATTTTC
* * * * *
27175267 -GGACATTTCATGCTCGGGAAATCGCATCATTAGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
128 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AATAGTTTTTAATTTTGTAAACAAGT
*
27175331 TTTGGTCTTTGAACTAAAAACTTA
192 TTTGGTCTTTGAATTAAAAACTTA
* * *
27175355 TTTATGTGAGAATTGTGTCTCTCTTGGTTC
1 TTTACGTGAGAATTATTTCTCTCTTGGTTC
27175385 AAGAAGGTCC
Statistics
Matches: 393, Mismatches: 59, Indels: 20
0.83 0.12 0.04
Matches are distributed among these distances:
215 12 0.03
216 360 0.92
217 14 0.04
218 7 0.02
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (215 bp):
TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTAAAACTTTTACGA
GTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCGA
ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAATAGTTTTTAATTTTGTAAACAAGTTTTG
GTCTTTGAATTAAAAACTTA
Found at i:27175442 original size:148 final size:147
Alignment explanation
Indices: 27175263--27175532 Score: 416
Period size: 148 Copynumber: 1.8 Consensus size: 147
27175253 TCGCAAAAAA
* * *
27175263 TTTTGGACATTTCATGCTCGGGAAATCGCATC-ATTAGGTCTAAATAGTTTGTCATTTTGTAAAC
1 TTTTGGACATTCCATGCTCGGGAAATAGCATCAATT-GGTCTAAATAATTTGTCATTTTGTAAAC
*
27175327 AAGTTTTGGTCTTTGAACTAAAAACTTATTTATGTGAGAATTGTGTCTCTCTTGGTTCAAGAAGG
65 AAGTTTTGGTCTTTGAACTAAAAACTTATTTATGTGAGAATTATGTCTCTCTTGGTTCAAGAAGG
27175392 TCCATTCCTTAGAGCAAT
130 TCCATTCCTTAGAGCAAT
* * *
27175410 TTTTGGAACATTCCATGCTCGTGAAATAGCATCAATTTGTCTAAATAATTTTTCATTTTGTAAAC
1 TTTTGG-ACATTCCATGCTCGGGAAATAGCATCAATTGGTCTAAATAATTTGTCATTTTGTAAAC
* * * *
27175475 AAGTTTTGGTCTTTTAATTAAAAACTTGTTTATGTGAGAATTATTTCTCTCTTGGTTC
65 AAGTTTTGGTCTTTGAACTAAAAACTTATTTATGTGAGAATTATGTCTCTCTTGGTTC
27175533 TTGGAAGAAC
Statistics
Matches: 110, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
147 6 0.05
148 101 0.92
149 3 0.03
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (147 bp):
TTTTGGACATTCCATGCTCGGGAAATAGCATCAATTGGTCTAAATAATTTGTCATTTTGTAAACA
AGTTTTGGTCTTTGAACTAAAAACTTATTTATGTGAGAATTATGTCTCTCTTGGTTCAAGAAGGT
CCATTCCTTAGAGCAAT
Found at i:27175918 original size:216 final size:213
Alignment explanation
Indices: 27175383--27176013 Score: 811
Period size: 215 Copynumber: 2.9 Consensus size: 213
27175373 CTCTCTTGGT
* * * * *
27175383 TCAAGAAGGTCCATTCCTTAGAGCAATTTTTGGAACATTCCATGCTCGTGAAATAGCATCAATTT
1 TCAAGATGATCCATTCCTTAGAGCAATTTTT-GAAAATTCCATGCTCGAGAAATAGCATCATTTT
* * *
27175448 GTCTAAATAATTTTTCATTTTGTAAACAAGTTTTGGTCTTTTAATTAAAAACTTGTTTATGTGAG
65 GTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAG
* * * * * *
27175513 AATTATTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTACTAAAACTTTTACGAGTTCTTTTAT
130 AATTGTTTCTCTATTGGTTCTTGGACGAACTTCCGAACT-GTCAAACTTTTACGAGTTCTTTTAT
*
27175578 AACTTCGTTTCCTTAAAGTA
194 AACTTCGATTCCTTAAAGTA
* *
27175598 TTAAGATGATCCATTCCTTCGAGCAATTTTTTGAACAATT-CATGCTCGAGAAATAGCATCATTT
1 TCAAGATGATCCATTCCTTAGAGCAA-TTTTTGAA-AATTCCATGCTCGAGAAATAGCATCATTT
* ** *
27175662 GGTCTAAATAGTTCGTCATTTTGTAAATAAGTTTTGGTCTTTGAATTAAAAACTTATTTATGTGA
64 TGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATGTGA
* * * * *
27175727 GAACTGTTTCTCTGTTGGTTCTTGGTCGAACTTCCAAACATGTCAAACTTTTACGAGTTCTTTTC
129 GAATTGTTTCTCTATTGGTTCTTGGACGAACTTCCGAAC-TGTCAAACTTTTACGAGTTCTTTTA
*
27175792 TAGCTTCGATTCCTTAAAGTA
193 TAACTTCGATTCCTTAAAGTA
** * *
27175813 CTCAAGATGATCCATTCCTTAGAGCAATTTTCCAAATATTCCATGCTCGGGAAATCGCATCATTT
1 -TCAAGATGATCCATTCCTTAGAGCAATTTTTGAAA-ATTCCATGCTCGAGAAATAGCATCATTT
* * *
27175878 TGTCTGAATAGTTTTTCATTTTGTAGACAAGTTTTGGTCTTTGAATTAAAAACTTTTTTA-GTGA
64 TGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATGTGA
* * ** *
27175942 GAATTG-TT-TCTATTGGTTCTTGAACGAACTTCCGAATTTGTCAAACTTTTATAAGTTCCTTTA
129 GAATTGTTTCTCTATTGGTTCTTGGACGAACTTCCGAA-CTGTCAAACTTTTACGAGTTCTTTTA
27176005 TAACTTCGA
193 TAACTTCGA
27176014 GCAATTTTTC
Statistics
Matches: 359, Mismatches: 50, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
213 53 0.15
214 3 0.01
215 195 0.54
216 108 0.30
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (213 bp):
TCAAGATGATCCATTCCTTAGAGCAATTTTTGAAAATTCCATGCTCGAGAAATAGCATCATTTTG
TCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGA
ATTGTTTCTCTATTGGTTCTTGGACGAACTTCCGAACTGTCAAACTTTTACGAGTTCTTTTATAA
CTTCGATTCCTTAAAGTA
Found at i:27176199 original size:16 final size:17
Alignment explanation
Indices: 27176175--27176215 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
27176165 ACTTTTACGA
*
27176175 GTTCTTTTATAACAT-G
1 GTTCCTTTATAACATCG
*
27176191 GTTCCTTTATAACTTCG
1 GTTCCTTTATAACATCG
27176208 GTTCCTTT
1 GTTCCTTT
27176216 TAGAATTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.17, C:0.20, G:0.12, T:0.51
Consensus pattern (17 bp):
GTTCCTTTATAACATCG
Found at i:27176409 original size:231 final size:230
Alignment explanation
Indices: 27176008--27176429 Score: 634
Period size: 231 Copynumber: 1.8 Consensus size: 230
27175998 TCCTTTATAA
* * *
27176008 CTTCGAGCAATTTTTCGAATATTCCATGCTCGGGAAATCACATCATTTTTCTAAAAATTTTGACA
1 CTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTTTCTAAAAATTTTGACA
* * * *
27176073 ATTTGTAAAAAAGTTTGGTCTTTCAATAAAAAGCATATTTACGTGAGAATAGTTTCTCTCTTTGT
66 ATTTGTAAAAAAGTTTGCTCTTTCAATAAAAAGCATATTTACGCGAGAATAGTTTCTCTCATGGT
* *
27176138 TCTTGGACGAATTTCCAAACATGTCAAACTTTTACGAGTTCTTTTATAACAT-GGTTCCTTTATA
131 TCTTAGACGAACTTCCAAACATGTCAAACTTTTACGAGTTCTTTTATAACATCGGTTCCTTTATA
27176202 ACTTCGGTTCCTTTTAGAATTCTAATGATCCTCTC
196 ACTTCGGTTCCTTTTAGAATTCTAATGATCCTCTC
*
27176237 CTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAAT-AGCATCATTTTTTCTAAAAATTTTGT
1 CTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCA-CATCA-TTTTTCTAAAAATTTTGA
* * * *
27176301 CAATTTGTAAACATGTTTTGCTCTTTCAATTAAAAGCTTATTTACGCGAGAATCA-TTTCTCTCA
64 CAATTTGTAAAAAAG-TTTGCTCTTTCAATAAAAAGCATATTTACGCGAGAAT-AGTTTCTCTCA
* * *
27176365 TGGTTCTTAGACGAACTTCGAAACATGTCAATCTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
127 TGGTTCTTAGACGAACTTCCAAACATGTCAAACTTTTACGAGTTCTTTTATAACATCGGTTCCTT
27176430 AAAGTATTCA
Statistics
Matches: 171, Mismatches: 17, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
228 1 0.01
229 40 0.23
230 30 0.18
231 91 0.53
232 9 0.05
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (230 bp):
CTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTTTCTAAAAATTTTGACA
ATTTGTAAAAAAGTTTGCTCTTTCAATAAAAAGCATATTTACGCGAGAATAGTTTCTCTCATGGT
TCTTAGACGAACTTCCAAACATGTCAAACTTTTACGAGTTCTTTTATAACATCGGTTCCTTTATA
ACTTCGGTTCCTTTTAGAATTCTAATGATCCTCTC
Found at i:27176646 original size:214 final size:212
Alignment explanation
Indices: 27176191--27177544 Score: 1314
Period size: 214 Copynumber: 6.3 Consensus size: 212
27176181 TTATAACATG
* ** * * * *
27176191 GTTCCTTTATAACTTCGGTTCCTTTTAGAATTCTA-ATGATCC-TCTCCTTCGAGCAATTTTCCA
1 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCAT-TCCTTTGAGCAATTTTCCA
* ** * * * **
27176254 AACATTCCATGCTCGGGAAATAGCATCATTTTTTCTAAAAATTTTGTCAATTTGTAAACATGTTT
65 AACATTCCATGCT-AGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTT
* * * * * * * * *
27176319 TGCTCTTTCAATTAAAAGCTTATTTACGCGAGAATCATTTCTCTCATGGTTCTTAGACGAACTT-
128 TGGTTTTTGAATTAAAAACTTATTTACGTGAGAAT--TGTATCTCTTGGTTCTTGGACGAACTTC
* *
27176383 CGAAACATGTCAATCTTTTACGA
191 CG-AACTTGTCAAACTTTTACGA
* *
27176406 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGGTCCATTCCTTTGAGCAATTTTCCGA
1 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTTGAGCAATTTTCCAA
* * * * *
27176471 ACATTTCACGCTAGGAAAGTAGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAAGAAGTCTT
66 ACATTCCATGCTAGGAAA-TAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT-TT
* * *
27176536 GGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTATATATTGGTTCTTGGACGAACTTCCAA
129 GGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTCTTGGTTCTTGGACGAACTTCCGA
* *
27176601 ACTTTTAAAACTTTTACGA
194 ACTTGTCAAACTTTTACGA
* * * * * *
27176620 GTTCCTTTATAACTTCGGTACCTTAAAGTATTCAATG-AGATTCATTCCTTCGAGCAATTTCCCG
1 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GAAGATCCATTCCTTTGAGCAATTTTCCA
* * *
27176684 AACATTCCATGC-ACGGGAAATCA-CATCAGTTGGTCTAAGTAGTTTTTCATTTTGTAAACAACT
65 AACATTCCATGCTA--GGAAAT-AGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * *
27176747 TTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTATTTTTCTCTTGGTTCTTGGACAAACT
127 TTGGTT-TTTGAATTAAAAACTTATTTACGTGAGAA-T-TGTATCTCTTGGTTCTTGGACGAACT
* * *
27176812 TTCGAACTAGTAAAACTTTTACGA
189 TCCGAACTTGTCAAACTTTTACGA
* * *
27176836 GTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAGGACGATCCATT-CTTTCGAGCAATTTTCCA
1 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTT-GAGCAATTTTCCA
* * * *
27176900 AAC-TTCCATACTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTCATTTTGTAAACAACTTT
65 AACATTCCATGCTAG-GAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * ** * *
27176964 GGTCTTTT-AATTAAAAATTTATTTACGTGAGACTTGTTTCTCTCTTTTTTTTGGACGAACTTCT
129 GGT-TTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTCT-TGGTTCTTGGACGAACTTCC
*
27177028 GAACTTTTCAAACTTTTACGA
192 GAACTTGTCAAACTTTTACGA
* * * ** * * *
27177049 GTTCTTTTAGAACTTTGGCTCCTTAAAGTATTTTAGAATATCCATTCCTTCT-AGAAATTTTTCA
1 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTT-TGAGCAATTTTCCA
* * * *
27177113 AACATTCCATGCTCAGTAAATCA-CATCGTTTGGTTTAAATAGCTTGTCATTTTGTAAACAA---
65 AACATTCCATGCT-AGGAAAT-AGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * *
27177174 --G--TTTAAATTAAAAACTTATTTAAC-AGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTT
128 TGGTTTTTGAATTAAAAACTTATTT-ACGTGAGAATTG--TATCTCTTGGTTCTTGGACGAACTT
* * *
27177234 CTGCACTTGTCAAACTTTTATGA
190 CCGAACTTGTCAAACTTTTACGA
* * * * * * * *
27177257 GTTCTTTTACAACCTCAGTTCCTTAAAGTATTCAATACGATCCATTCCTTCGAGAAATATTT-CG
1 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTTGAGCAAT-TTTCCA
*
27177321 AACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
65 AACATTCCATGC-TAGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TT
* * *
27177386 TGGTTTTTGAATTATAAACTTATTTACGTGAGAATTG-ATTCTCTTAGTTCTTGGACGAACTTTC
128 TGGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTA-TCTCTTGGTTCTTGGACGAACTTCC
*
27177450 TAACTTGTCAAACTTTTACGA
192 GAACTTGTCAAACTTTTACGA
* * * *
27177471 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGATGGTCCATT-CTTTCGAGC-ATTATTCT
1 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTT-GAGCAATT-TTCC
*
27177534 AGACATTCCAT
64 AAACATTCCAT
27177545 ACTCGGGAAA
Statistics
Matches: 936, Mismatches: 158, Indels: 91
0.79 0.13 0.08
Matches are distributed among these distances:
206 3 0.00
207 22 0.02
208 136 0.15
209 11 0.01
212 9 0.01
213 96 0.10
214 331 0.35
215 108 0.12
216 219 0.23
217 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (212 bp):
GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTTGAGCAATTTTCCAA
ACATTCCATGCTAGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTGG
TTTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTCTTGGTTCTTGGACGAACTTCCGAAC
TTGTCAAACTTTTACGA
Found at i:27176833 original size:430 final size:424
Alignment explanation
Indices: 27176191--27177555 Score: 1496
Period size: 429 Copynumber: 3.2 Consensus size: 424
27176181 TTATAACATG
** * *
27176191 GTTCCTTTATAACTTCGGTTCCTTTTAGAATTCTAAT--GA-TCCTCTCCTTCGAGCAATTTTCC
1 GTTCCTTTATAACTTCGGTTCCTTAAAGTATTC-AATGAGATTCAT-TCCTTCGAGCAATTTTCC
* ** * * * *
27176253 AAACATTCCATGCTCGGGAAAT-AGCATCATTTTTTCTAAAAATTTTGTCAATTTGTAAACATGT
64 AAACATTCCATGCTCGGGAAATCA-CATCAGTTGGTCTAATAGTTTT-TCATTTTGTAAACA-AT
* * * * * *
27176317 TTTGCTCTTTCAATTAAAAGCTTATTTACGCGAGAATCATTTCTCTCATGGTTCTTAGACGAACT
126 TTTG-TGTTTAAATTAAAAACTTATTTACGAGAGAATTATTTCTCTCTTGGTTCTTAGACGAACT
* * *
27176382 TCGAAAC-ATGTCAATCTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGG
190 TCG-AACTA-GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * *
27176446 TCCATTCCTTTGAGCAATTTTCCGAACATTTCACGCTAGGAAAGTAGCATCATTTGGTCTAAATA
253 TCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTAGGAAA-TCGCATCATTTGGTCTAAATA
* * * *
27176511 GTTTGTCATTTTTTAAAGAAGTCTTGGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTATA
317 GTTTGTCATTTTGTAAACAACT-TTGGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTATC
* * *
27176576 TATTGGTTCTTGGACGAACTTCCAAACTTTTAAAACTTTTACGA
381 TCTTAGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGA
* * *
27176620 GTTCCTTTATAACTTCGGTACCTTAAAGTATTCAATGAGATTCATTCCTTCGAGCAATTTCCCGA
1 GTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAATGAGATTCATTCCTTCGAGCAATTTTCCAA
*
27176685 ACATTCCATGCACGGGAAATCACATCAGTTGGTCTAAGTAGTTTTTCATTTTGTAAACAACTTTT
66 ACATTCCATGCTCGGGAAATCACATCAGTTGGTCTAA-TAGTTTTTCATTTTGTAAACAA-TTTT
* * * * *
27176750 GTTGTTTGAATTAAAAACTTATTTACGTGAGAATTATTTTTCTCTTGGTTCTTGGACAAACTTTC
129 G-TGTTTAAATTAAAAACTTATTTACGAGAGAATTATTTCTCTCTTGGTTCTTAGACGAAC-TTC
* * *
27176815 GAACTAGTAAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAGGACGATCCA
192 GAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * *
27176880 TT-CTTTCGAGCAATTTTCCAAAC-TTCCATACTCGAGAAATCGCATCATTTGGTCTAAATATTT
257 TTCCTTT-GAGCAATTTTCCGAACATTCCATGCTAG-GAAATCGCATCATTTGGTCTAAATAGTT
* * *
27176943 TGTCATTTTGTAAACAACTTTGGTCTTTT-AATTAAAAATTTATTTACGTGAGACTTGTTTCTCT
320 TGTCATTTTGTAAACAACTTTGGT-TTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTCT
** * **
27177007 CTTTTTTTTGGACGAACTTCTGAACTTTTCAAACTTTTACGA
384 -TAGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGA
* * * * ** * * *
27177049 GTTCTTTTAGAACTTTGGCTCCTTAAAGTATTTTA-GA-ATATCCATTCCTTCTAGAAATTTTTC
1 GTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAATGAGAT-T-CATTCCTTCGAGCAATTTTCC
* * * * *
27177112 AAACATTCCATGCTCAGTAAATCACATC-GTTTGGTTTAAATAGCTTGTCATTTTGTAAACAA--
64 AAACATTCCATGCTCGGGAAATCACATCAG-TTGGTCT-AATAGTTTTTCATTTTGTAAACAATT
*
27177174 ----GTTTAAATTAAAAACTTATTTAAC-AGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTT
127 TTGTGTTTAAATTAAAAACTTATTT-ACGAGAGAATTATTTCTCTCTTGGTTCTTAGACGAACTT
* * * * * * *
27177234 CTGCACTTGTCAAACTTTTATGAGTTCTTTTACAACCTCAGTTCCTTAAAGTATTCAATACGATC
191 C-GAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
* *
27177299 CATTCCTTCGAGAAATATTT-CGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAG
255 CATTCCTTTGAGCAAT-TTTCCGAACATTCCATGC-TAGGAAATCGCATCATTTGGTCTAAATAG
*
27177363 TTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTACGTGAGAATTG-ATTC
318 TTTGTCATTTTGTAAACAAC-TTTGGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTA-TC
* * *
27177427 TCTTAGTTCTTGGACGAACTTTCTAACTTGTCAAACTTTTACGA
381 TCTTAGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGA
* * * * * *
27177471 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAA-GATGGTCCATTCTTTCGAGC-ATTATTCT
1 GTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAATGA-GATTCATTCCTTCGAGCAATT-TTCC
* *
27177534 AGACATTCCATACTCGGGAAAT
64 AAACATTCCATGCTCGGGAAAT
27177556 GATATGATTC
Statistics
Matches: 790, Mismatches: 118, Indels: 63
0.81 0.12 0.06
Matches are distributed among these distances:
420 3 0.00
421 119 0.15
422 161 0.20
423 38 0.05
424 1 0.00
427 2 0.00
428 42 0.05
429 212 0.27
430 198 0.25
431 14 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (424 bp):
GTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAATGAGATTCATTCCTTCGAGCAATTTTCCAA
ACATTCCATGCTCGGGAAATCACATCAGTTGGTCTAATAGTTTTTCATTTTGTAAACAATTTTGT
GTTTAAATTAAAAACTTATTTACGAGAGAATTATTTCTCTCTTGGTTCTTAGACGAACTTCGAAC
TAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
TTTGAGCAATTTTCCGAACATTCCATGCTAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
TTTGTAAACAACTTTGGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTCTTAGTTCT
TGGACGAACTTCCAAACTTTTCAAACTTTTACGA
Found at i:27178124 original size:74 final size:74
Alignment explanation
Indices: 27178035--27178176 Score: 266
Period size: 74 Copynumber: 1.9 Consensus size: 74
27178025 AATGAAAGTG
*
27178035 AACAGCCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGAATGAAACA
1 AACAGCCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGAAAGAAACA
27178100 TTGAATGTC
66 TTGAATGTC
*
27178109 AACAGCCATCATTCATCATTCATAAATGAATTTGTTGATTCATTTAAAAACTCTTGAAAGAAACA
1 AACAGCCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGAAAGAAACA
27178174 TTG
66 TTG
27178177 TATCCCTCCA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 66 1.00
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (74 bp):
AACAGCCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGAAAGAAACA
TTGAATGTC
Found at i:27182356 original size:18 final size:18
Alignment explanation
Indices: 27182315--27182359 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
27182305 CATTGCATGG
27182315 AATGCATGAGTTACAAGA
1 AATGCATGAGTTACAAGA
* ** *
27182333 AGTGCATGAGTTGTATGA
1 AATGCATGAGTTACAAGA
27182351 AATGCATGA
1 AATGCATGA
27182360 AGTGTTTTCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.09, G:0.27, T:0.27
Consensus pattern (18 bp):
AATGCATGAGTTACAAGA
Found at i:27182541 original size:15 final size:15
Alignment explanation
Indices: 27182489--27182545 Score: 60
Period size: 15 Copynumber: 3.8 Consensus size: 15
27182479 TCATGCTTGT
27182489 AACATGAGTGTTCGC
1 AACATGAGTGTTCGC
* * *
27182504 CACATCAGTGTTCTC
1 AACATGAGTGTTCGC
** *
27182519 AATGTGAGTGCTCGC
1 AACATGAGTGTTCGC
27182534 AACATGAGTGTT
1 AACATGAGTGTT
27182546 TGCAGCTCCA
Statistics
Matches: 30, Mismatches: 12, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (15 bp):
AACATGAGTGTTCGC
Found at i:27188688 original size:22 final size:22
Alignment explanation
Indices: 27188646--27188689 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
27188636 TAGCCTTTTG
*
27188646 TTTTTTTTATACTTTCGAAACTC
1 TTTTTTTTATAC-TTCCAAACTC
27188669 TTTTTTTTAATA-TTCCAAACT
1 TTTTTTTT-ATACTTCCAAACT
27188690 TTGCACTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 8 0.42
23 8 0.42
24 3 0.16
ACGTcount: A:0.25, C:0.16, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTTTTTTATACTTCCAAACTC
Found at i:27200820 original size:5 final size:5
Alignment explanation
Indices: 27200803--27200843 Score: 64
Period size: 5 Copynumber: 8.2 Consensus size: 5
27200793 ATATCCACAC
* *
27200803 TTTAA TTTAT TTTGT TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T
27200844 AGCTGTCATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:27202193 original size:5 final size:5
Alignment explanation
Indices: 27202183--27202220 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
27202173 ATCTAATATT
*
27202183 TTTCA TTTCA TTTC- TTTCT TTTCA TTTCA TTTCA TTTC
1 TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTC
27202221 TTTTTTTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.13, C:0.21, G:0.00, T:0.66
Consensus pattern (5 bp):
TTTCA
Found at i:27202205 original size:14 final size:14
Alignment explanation
Indices: 27202183--27202255 Score: 60
Period size: 14 Copynumber: 5.2 Consensus size: 14
27202173 ATCTAATATT
27202183 TTTCATTTCATTTC
1 TTTCATTTCATTTC
*
27202197 TTTCTTTTCATTTC
1 TTTCATTTCATTTC
* *
27202211 ATTTCATTTCTTTTTT
1 -TTTCATTTC-ATTTC
*
27202227 TTTC-TTT-TTTTC
1 TTTCATTTCATTTC
* *
27202239 TTTCGTTTCCTTTC
1 TTTCATTTCATTTC
27202253 TTT
1 TTT
27202256 TATTCCAAAC
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
12 8 0.16
13 3 0.06
14 23 0.47
15 12 0.24
16 3 0.06
ACGTcount: A:0.07, C:0.19, G:0.01, T:0.73
Consensus pattern (14 bp):
TTTCATTTCATTTC
Found at i:27202210 original size:10 final size:10
Alignment explanation
Indices: 27202182--27202234 Score: 63
Period size: 10 Copynumber: 5.4 Consensus size: 10
27202172 AATCTAATAT
27202182 TTTTCATTTC
1 TTTTCATTTC
*
27202192 ATTTC-TTTC
1 TTTTCATTTC
27202201 TTTTCATTTC
1 TTTTCATTTC
*
27202211 ATTTCATTTC
1 TTTTCATTTC
**
27202221 TTTTTTTTTC
1 TTTTCATTTC
27202231 TTTT
1 TTTT
27202235 TTTCTTTCGT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
9 8 0.22
10 28 0.78
ACGTcount: A:0.09, C:0.17, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTTCATTTC
Found at i:27202214 original size:24 final size:24
Alignment explanation
Indices: 27202183--27202228 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
27202173 ATCTAATATT
27202183 TTTCATTTCATTTCTTTCTTTTCA
1 TTTCATTTCATTTCTTTCTTTTCA
*
27202207 TTTCATTTCATTTCTTTTTTTT
1 TTTCATTTCATTTCTTTCTTTT
27202229 TCTTTTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTCATTTCATTTCTTTCTTTTCA
Found at i:27202247 original size:5 final size:4
Alignment explanation
Indices: 27202183--27202255 Score: 51
Period size: 5 Copynumber: 16.8 Consensus size: 4
27202173 ATCTAATATT
27202183 TTTC ATTTC ATTTC TTTC TTTTC ATTTC ATTTC ATTTC TTT- TTT- TTTC
1 TTTC -TTTC -TTTC TTTC -TTTC -TTTC -TTTC -TTTC TTTC TTTC TTTC
*
27202231 TTTT TTTC TTTC GTTTCC TTTC TTT
1 TTTC TTTC TTTC -TTT-C TTTC TTT
27202256 TATTCCAAAC
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
3 6 0.10
4 21 0.34
5 33 0.54
6 1 0.02
ACGTcount: A:0.07, C:0.19, G:0.01, T:0.73
Consensus pattern (4 bp):
TTTC
Found at i:27209259 original size:74 final size:74
Alignment explanation
Indices: 27209169--27209312 Score: 279
Period size: 74 Copynumber: 1.9 Consensus size: 74
27209159 CAAAATGAAA
*
27209169 GTGAACAGCCGTCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGAATGAA
1 GTGAACAGCCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGAATGAA
27209234 ACATTAAAT
66 ACATTAAAT
27209243 GTGAACAGCCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGAATGAA
1 GTGAACAGCCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGAATGAA
27209308 ACATT
66 ACATT
27209313 GTATCCCTCC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (74 bp):
GTGAACAGCCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGAATGAA
ACATTAAAT
Found at i:27211620 original size:15 final size:15
Alignment explanation
Indices: 27211602--27211651 Score: 91
Period size: 15 Copynumber: 3.3 Consensus size: 15
27211592 TTTTTAAATA
27211602 ATAGTGTGGCCATAG
1 ATAGTGTGGCCATAG
*
27211617 ATAGTGTTGCCATAG
1 ATAGTGTGGCCATAG
27211632 ATAGTGTGGCCATAG
1 ATAGTGTGGCCATAG
27211647 ATAGT
1 ATAGT
27211652 TCGAAAGTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.30
Consensus pattern (15 bp):
ATAGTGTGGCCATAG
Found at i:27212669 original size:215 final size:215
Alignment explanation
Indices: 27212097--27214264 Score: 2617
Period size: 216 Copynumber: 10.1 Consensus size: 215
27212087 TCATCCAAAT
* *
27212097 AATTCTCACGTAAATAAGTTTTTAAATCAAAGACCAAAGTTGTTTACAAAATGACAAACTATTTA
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTA
*
27212162 GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGAAATGGATCATC
66 GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAG-AATGGATCGTC
* * * * * * * *
27212226 TTGAAAACTTTATGGAACCGAAGATATAAAGGAACTCATAAAAGTTTTACTAGTTCAGAAGTTCA
130 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCG
* *
27212291 TCCAAGAACCAAGAGTGAAAT
195 TCCAAGAACCAAGAGAGAAAC
* * * * * * *
27212312 AATTCTCATGTAAACAAGTTTTTAATTTAAACAACAAAAGTTGTTTACAAAATGACAAACTACTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCAAAGTTGTTTACAAAATGACAAAATATTT
* * * **
27212377 AGACCAAATGATGCAATTTTCCGAGCATGGAATGTTCGTAAAATTTTTC-AAAGGAATGGATCG-
65 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGATCGT
* *
27212440 CATTGAAAACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTAGAAGTT
129 C-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
* *
27212505 CGTCCAAGAACCAAGAGCGAAAA
193 CGTCCAAGAACCAAGAGAGAAAC
*
27212528 AATTTTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTA
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTA
* * * *
27212593 GACCAAATGATGCGACTTCCTGAGCATGGAATGTTCAAAAAATTGCTCGAAAGTATGGATCGTCT
66 GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCT
* * * *
27212658 TGAATACTTTAAGGAACCAAAGTTATAAAGGAAATCGTAAAAGTTTTA-ATAGTTCTA-AAGTTC
131 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA-AGTTC-AGAAGTTC
* * *
27212721 ATCCAAGAATCAAGAGAGAAAT
194 GTCCAAGAACCAAGAGAGAAAC
** * * * *
27212743 AATTCTCACGTAAATAAGTTTTTAATTCAAAGAAAAAAAAACTTGTTTGCAAAAGGACAAACTAT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAG---ACCAAAGTTGTTTACAAAATGACAAAATAT
* * * *
27212808 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATTTTCGGAAAATTGCTCGAAGGAATGGATTG
63 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCG
* * *
27212873 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGAGAAGTT-GGAAGTT
128 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
27212937 CGTCCAAGAACCAAGAGA-AAA-
193 CGTCCAAGAACCAAGAGAGAAAC
* * * *
27212958 AATTCTCATGTAAATAAGTTTTTAATTAAAAGACCAAAAGTTTTTTTATAAAATGACAAACA-AT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAG-TTGTTTACAAAATGACAAA-ATAT
* * ** * * * *
27213022 TTAGACCAAATTATGTGATTTTTCGAGCATTGAATGTTTGGAAAATTACTC-AAAGGAATGGATC
63 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGATC
* * * * * * *
27213086 GTCTTGAATAATTTAAGGAATCGAAGTTGTGAAAGAACTCGTGAAAGTTTGACAAGTTCGGACGT
127 GTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGT
*
27213151 TCGTGCAAGAACCAAGAGAGAAAC
192 TCGTCCAAGAACCAAGAGAGAAAC
* * * * * *
27213175 AATTATCATGTAATTAAGTTTTTAATTCAAAGAACAAAACTTGTTTACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAG-ACCAAAGTTGTTTACAAAATGACAAAATATTT
* * * * * * * *
27213240 AGACCAAATTATGCGATTTCTCGAGTATGAAATGTTC-AGAATATTGCTCAAAAGAAAGGATCAT
65 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAAGAATGGATCGT
* * * *
27213304 CTTGTATATTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTC
129 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
*
27213369 GTCCAAGAA-CTA-AGAGAAAC
194 GTCCAAGAACCAAGAGAGAAAC
* * *
27213389 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAGTTGTTCACAAAATGAAAAAATATTTA
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTA
* * *
27213454 AACCAAATGATACGATTTCCCGAGCGTGGAATGTTCGAAAAATTGCTCG-AAGAAATGGATCGTC
66 GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAG-AATGGATCGTC
* * * * *
27213518 TTGAATACTTTAAGGAATCGAAGTTTTAAAGGAACTCGTAAAAGTTTTACTAGTTCAGAAGTTCG
130 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCG
* *
27213583 TCCAAGAACCGAGAGTGAAAC
195 TCCAAGAACCAAGAGAGAAAC
* * *
27213604 AATTTTCACGTAAATAAATTTTTAATTCAAATACCAAAGTTGTTTACAAAATGACAAAATATTTA
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTA
* * * * * *
27213669 GACGAAATAATGCTACTTCCCTAGCATGGAATGTTTGAAAAATTGCTC-AAAGGAATGGATCGTC
66 GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGATCGTC
* * *
27213733 TTGAATACTTTAAGGAACCGAAGTTGTGAAAGAACTCGTAAAAGTTTGACAAGTT-TGACAGTTC
130 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGA-AGTTC
**
27213797 GTGAAAGAACCAAGAGAGAAAC
194 GTCCAAGAACCAAGAGAGAAAC
* * * * * *
27213819 AATTCTCATGTAATTAAGTTTTTAATTCAAAGACGAAAACTTGTTTACAAGATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAGTTGTTTACAAAATGACAAAATATTT
* * * * * *
27213884 AAACCAAATTATGCGATTTCCAGAGTATGGAATGTTC-AAAATATTGTTCGAAAGAATGGATCAT
65 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA-ATTGCTCGAAAGAATGGATCGT
* * * * **
27213948 CTTGAATACTTTAAGGAATCGAAGTTATAAAGGAACTCGTAAAAGTTTTACTAGTTCTTAAGTTC
129 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
* * *
27214013 GTCCAAGAACAAAGAGTGAAAT
194 GTCCAAGAACCAAGAGAGAAAC
* * * *
27214035 AATTCTCATGTAAATAAGTTTTTAATTGAAACAACAAAGTTGTTTACAAAATGACAAAAATATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGAC-AAAATATTT
* * * *
27214100 AGACCAAATGATGCGATTTCCCGAGTATGGAATGTTC-AGAATATTGCTCGAAAGAATAGATCAT
65 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAAGAATGGATCGT
* * ** *
27214164 CTTGAATACTTTAAGGAACTGAAGTTCTAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTTC
129 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
*
27214229 GTCCAAAAACCAAGAGAGAAAC
194 GTCCAAGAACCAAGAGAGAAAC
27214251 AATTCTCACGTAAA
1 AATTCTCACGTAAA
27214265 CAACTTCAAG
Statistics
Matches: 1668, Mismatches: 248, Indels: 73
0.84 0.12 0.04
Matches are distributed among these distances:
212 4 0.00
213 144 0.09
214 162 0.10
215 506 0.30
216 654 0.39
217 64 0.04
218 133 0.08
219 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTA
GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCT
TGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGT
CCAAGAACCAAGAGAGAAAC
Found at i:27212701 original size:431 final size:428
Alignment explanation
Indices: 27211656--27214264 Score: 3121
Period size: 431 Copynumber: 6.1 Consensus size: 428
27211646 GATAGTTCGA
* * * * * *
27211656 AAGTTCATCCAAGAACCAAGAGTGAAATAATTCTCATGTAAATAAGTTTTTAATTGAAACAACAA
1 AAGTTCGTCCAAGAACCAAGAG-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* *
27211721 AGTTGTTTACAAAATGACAAAATATTTACACCAAATGATGCGATTTCCCGAGCATTGAATGTTC-
65 AGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * *
27211785 AGAAATTTGTTC-AAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTGTGAAA-GAAC
130 A-AAAATTGCTCGAAA-GAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTAT-AAAGGAAC
* * * * * * * *
27211848 TCATAAAAGTTTGACGAGTTC-GAAAGTTCATGCAAGAACCAAGAGAGAAACAATTCTCACG---
192 TCGTAAAAGTTTTACTAGTTCAG-AAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAA
* * * * * * *
27211909 -TAAGTTTTTAATTCAAAGACCGAAACTTATTTACAAAATGACAAACTATTTAGATCAAATTATG
256 ATAAGTTTTTAATTCAAACAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * *
27211973 CGATTTCCCGAGTATGGAATGTTCAGAATATTGTTCGAAA-GAATGGATCATCTTGAATACCTTA
321 CGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTC-AAAGGAATGGATC-GCTTGAATACTTTA
* *
27212037 AGGAACCGAAGTTCTAAAAGAACTCGTAAATGTTTGACAAGTTTGG
383 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGG
* * *
27212083 AAG-T--T-C---ATCC------AAATAATTCTCACGTAAATAAGTTTTTAAATCAAAGACCAAA
1 AAGTTCGTCCAAGAACCAAGAGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
*
27212135 GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
66 GTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
* * * * * *
27212200 AAAATTGCTCG-AAGAAATGGATCATCTTGAAAACTTTATGGAACCGAAGATATAAAGGAACTCA
131 AAAATTGCTCGAAAG-AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAGGAACTCG
* *
27212264 TAAAAGTTTTACTAGTTCAGAAGTTCATCCAAGAACCAAGAGTGAAATAATTCTCATGTAAACAA
195 TAAAAGTTTTACTAGTTCAGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAATAA
* * *
27212329 GTTTTTAATTTAAACAACAAAAGTTGTTTACAAAATGACAAACTACTTAGACCAAATGATGCAAT
260 GTTTTTAATTCAAACAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* ** *
27212394 TTTCCGAGCATGGAATGTTCGTAAAATTTTTCAAAGGAATGGATCGCATTGAAAACTTTAAGGAA
325 TTCCCGAGCATGGAATGTTCG-AAAATTGCTCAAAGGAATGGATCGC-TTGAATACTTTAAGGAA
*
27212459 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTAG
388 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGG
* *
27212500 AAGTTCGTCCAAGAACCAAGAGCGAAAAAATTTTCACGTAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAG-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * *
27212565 AGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGACTTCCTGAGCATGGAATGTTCA
65 AGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * *
27212630 AAAAATTGCTCGAAAGTATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAGGAAATCG
130 AAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAGGAACTCG
* * * * *
27212695 TAAAAGTTTTAATAGTTCTA-AAGTTCATCCAAGAATCAAGAGAGAAATAATTCTCACGTAAATA
195 TAAAAGTTTTACTAGTTC-AGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAATA
* * * * *
27212759 AGTTTTTAATTCAAAGAAAAAAAAACTTGTTTGCAAAAGGACAAACTATTTAGACCAAATGATGC
259 AGTTTTTAATTC-AA-ACAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * *
27212824 GATTTCCCGAGCATGGAATTTTCGGAAAATTGCTCGAAGGAATGGATTGTCTTGAATACTTTAAG
322 GATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCAAAGGAATGGATCG-CTTGAATACTTTAAG
* *
27212889 GAACCGAAGTTATAAAAGAACTCATAAAAGTTTGAGAAG-TTGG
385 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGG
* * *
27212932 AAGTTCGTCCAAGAACCAAGA-GAAAAAATTCTCATGTAAATAAGTTTTTAATTAAAAGACCAAA
1 AAGTTCGTCCAAGAACCAAGAGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AA
* * * * ** *
27212996 AGTTTTTTTATAAAATGACAAACA-ATTTAGACCAAATTATGTGATTTTTCGAGCATTGAATGTT
65 AG-TTGTTTACAAAATGACAAA-ATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * *
27213060 TGGAAAATTACTC-AAAGGAATGGATCGTCTTGAATAATTTAAGGAATCGAAGTTGTGAAA-GAA
128 CGAAAAATTGCTCGAAA-GAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTAT-AAAGGAA
* * * * * * * * *
27213123 CTCGTGAAAGTTTGACAAGTTCGGACGTTCGTGCAAGAACCAAGAGAGAAACAATTATCATGTAA
191 CTCGTAAAAGTTTTACTAGTTCAGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAA
* * * *
27213188 TTAAGTTTTTAATTCAAAGAACAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATTATG
256 ATAAGTTTTTAATTCAAACAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * * * * *
27213253 CGATTTCTCGAGTATGAAATGTTCAGAATATTGCTCAAAAGAAAGGATCATCTTGTATATTTTAA
321 CGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCAAAGGAATGGATC-GCTTGAATACTTTAA
* *
27213318 GGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGG
384 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGG
* *
27213363 AAGTTCGTCCAAGAACTAAGA-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAA
1 AAGTTCGTCCAAGAACCAAGAGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * *
27213427 GTTGTTCACAAAATGAAAAAATATTTAAACCAAATGATACGATTTCCCGAGCGTGGAATGTTCGA
66 GTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
*
27213492 AAAATTGCTCG-AAGAAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTTTAAAGGAACTCG
131 AAAATTGCTCGAAAG-AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAGGAACTCG
* * * *
27213556 TAAAAGTTTTACTAGTTCAGAAGTTCGTCCAAGAACCGAGAGTGAAACAATTTTCACGTAAATAA
195 TAAAAGTTTTACTAGTTCAGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAATAA
* * * * * * * *
27213621 ATTTTTAATTCAAA-TACCAAAGTTGTTTACAAAATGACAAAATATTTAGACGAAATAATGCTAC
260 GTTTTTAATTCAAACAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* *
27213685 TTCCCTAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAA
325 TTCCCGAGCATGGAATGTTCG-AAAATTGCTCAAAGGAATGGATCG-CTTGAATACTTTAAGGAA
* *
27213750 CCGAAGTTGTGAAAGAACTCGTAAAAGTTTGACAAGTTT-G
388 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGG
** * * *
27213790 ACAGTTCGTGAAAGAACCAAGAGAGAAACAATTCTCATGTAATTAAGTTTTTAATTCAAAGACGA
1 A-AGTTCGTCCAAGAACCAAGAG-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-C
* * * * * * *
27213855 AAACTTGTTTACAAGATGACAAACTATTTAAACCAAATTATGCGATTTCCAGAGTATGGAATGTT
63 AAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* *
27213920 C-AAAATATTGTTCGAAAGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAGGAAC
128 CGAAAA-ATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAGGAAC
** *
27213984 TCGTAAAAGTTTTACTAGTTCTTAAGTTCGTCCAAGAACAAAGAGTGAAATAATTCTCATGTAAA
192 TCGTAAAAGTTTTACTAGTTCAGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAA
* *
27214049 TAAGTTTTTAATTGAAACAAC-AAAGTTGTTTACAAAATGACAAAAATATTTAGACCAAATGATG
257 TAAGTTTTTAATTCAAACAACAAAAGTTGTTTACAAAATGAC-AAACTATTTAGACCAAATGATG
* * * *
27214113 CGATTTCCCGAGTATGGAATGTTCAGAATATTGCTCGAAA-GAATAGATCATCTTGAATACTTTA
321 CGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTC-AAAGGAATGGATC-GCTTGAATACTTTA
* * ** *
27214177 AGGAACTGAAGTTCTAAAAGAACAAGTAAAAGTTTGACAAGTTCGG
383 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGG
*
27214223 AAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAA
1 AAGTTCGTCCAAGAACCAAGAG-GAAACAATTCTCACGTAAA
27214265 CAACTTCAAG
Statistics
Matches: 1879, Mismatches: 245, Indels: 111
0.84 0.11 0.05
Matches are distributed among these distances:
412 4 0.00
413 196 0.10
414 2 0.00
416 5 0.00
417 148 0.08
418 1 0.00
420 4 0.00
421 1 0.00
423 1 0.00
424 4 0.00
426 1 0.00
427 6 0.00
428 150 0.08
429 169 0.09
430 215 0.11
431 488 0.26
432 339 0.18
433 143 0.08
434 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (428 bp):
AAGTTCGTCCAAGAACCAAGAGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
GTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
AAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAGGAACTCGT
AAAAGTTTTACTAGTTCAGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAATAAG
TTTTTAATTCAAACAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
TCCCGAGCATGGAATGTTCGAAAATTGCTCAAAGGAATGGATCGCTTGAATACTTTAAGGAACCG
AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGG
Found at i:27214645 original size:20 final size:21
Alignment explanation
Indices: 27214615--27214659 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
27214605 AAAAGAAGTT
27214615 GAAACAAAAAGAGAGAGTGAG
1 GAAACAAAAAGAGAGAGTGAG
* *
27214636 GAAA-AAAAAGTGAGAGTGAT
1 GAAACAAAAAGAGAGAGTGAG
27214656 GAAA
1 GAAA
27214660 GTGTGAGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.58, C:0.02, G:0.31, T:0.09
Consensus pattern (21 bp):
GAAACAAAAAGAGAGAGTGAG
Found at i:27214662 original size:15 final size:14
Alignment explanation
Indices: 27214642--27214689 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
27214632 TGAGGAAAAA
27214642 AAAGTGAGAGTGATG
1 AAAGTGAGAGTGA-G
*
27214657 AAAGTGTGAGTGAAG
1 AAAGTGAGAGTG-AG
* *
27214672 AGATTGAGAGTGAG
1 AAAGTGAGAGTGAG
27214686 AAAG
1 AAAG
27214690 AACTTGAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
14 4 0.15
15 21 0.81
16 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.40, T:0.19
Consensus pattern (14 bp):
AAAGTGAGAGTGAG
Found at i:27218442 original size:15 final size:15
Alignment explanation
Indices: 27218424--27218503 Score: 54
Period size: 15 Copynumber: 5.3 Consensus size: 15
27218414 GTGTTACAAG
*
27218424 CACTCCTGTTGCGAA
1 CACTCATGTTGCGAA
* *
27218439 CACTGGA-GCTGCGAA
1 CACT-CATGTTGCGAA
*
27218454 CACTCATGTTGCGAG
1 CACTCATGTTGCGAA
** *
27218469 CACTCACATTGAGAA
1 CACTCATGTTGCGAA
* * *
27218484 TACTAATGTTGTGAA
1 CACTCATGTTGCGAA
27218499 CACTC
1 CACTC
27218504 GCGTTGCTAG
Statistics
Matches: 46, Mismatches: 17, Indels: 4
0.69 0.25 0.06
Matches are distributed among these distances:
14 1 0.02
15 45 0.98
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (15 bp):
CACTCATGTTGCGAA
Found at i:27219992 original size:216 final size:216
Alignment explanation
Indices: 27219604--27223158 Score: 4176
Period size: 216 Copynumber: 16.6 Consensus size: 216
27219594 CTTGCATCAC
* * * * * * *
27219604 TTTCTCTCTTGATTCTTGGACAAACTTTCGAACTAGTAAAACATTTACGAATTCTTTTACAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * * * *
27219669 TGGTTCCTTAAAGCATTCAAGACAATCCTTTCCTTTGAGCAATTTTCCAAACATTCCATGCTCGG
66 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
* ** * * * * *
27219734 TAAATCGCCCCAGTTT-TTCTAAAAAGTTTGTCATTATGTAAACAAGTTTTGCTCTTTCAATTAA
131 GAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* *
27219798 AAGCTTATTTACGTGAGAGTTG
195 AAACTTATTTACGTGAGAATTG
* * * *
27219820 TTTCCCTCTTGGTTCTTGGAAGAACTTTCGAACTAGTAAAACTTTTACGAGTTCTTTTATAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * *
27219885 TGGTTCCTTAAAGTATTCAAGACGGTCCATCCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
66 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
* *
27219950 GAAATCGCATCATTTTGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
131 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
* *
27220015 AACTTATTTACGAT-TGAATTA
196 AACTTATTTACG-TGAGAATTG
* * * * * * *
27220036 TTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTAGTAAAACATTTATGAGTTCATTTATAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * *
27220101 TGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAA-TTTTCTGAACATTTCATGCTCG
66 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCG
*
27220165 GGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
130 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
27220230 AAACTTATTTACGTGAGAATTG
195 AAACTTATTTACGTGAGAATTG
* * *
27220252 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTACGAGTTCTTTTATAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * *
27220317 TGGTTCCTTAAAGTATTTAAGACGGTCCATCCCTTCGAGCAATTTTTCGAACATTCCATGCTTGG
66 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
** * * *
27220382 GAAATCGCATCATTTTTTCTAAATGGTATT-TCATTTTGTAAACAAGTTTTGGCCTTTTAATTAA
131 GAAATCGCATCATTTGGTCTAAATAGT-TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
*
27220446 AAACTTTTTTACGTGAGAATTG
195 AAACTTATTTACGTGAGAATTG
* * *
27220468 -TT-TCTATTGGTTCTTAGACAAAC-TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * *
27220530 TCGATTCCTTAAAGCATTCAAGATGATCCTTTCCTTCGAGCAATTTTCCGAACATTCCATGCTTG
65 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG
** * * *
27220595 GGAAATCGCATCATTTTTTCTAGA-AGTTTGTCATTTTGTAAACAAGTTTTGCTCTTTCAATTAA
130 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * *
27220659 AAGCTTATTTAAGTGAGAATCG
195 AAACTTATTTACGTGAGAATTG
* * * * *
27220681 TTTCTCTCTTGGTTCTTGGACGAACATTCAAACGTGTCAAACTTTTACGAGTTCTTGTATAACTC
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * *
27220746 CGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGA
66 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
*
27220811 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAAGTTTTGGTCTTTGAATT-AA
131 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
* *
27220875 AACTTATTTACATGAGAACTG
196 AACTTATTTACGTGAGAATTG
* * * * * * * *
27220896 --TATCTATTAGTTCTTGGACGAACTTCCAAACTTTTAAAACTTTTACGAGTTCCTTTATAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * *
27220959 CGATTCCTTAAAGTATTCAATG-CGATCCATTCCTTCGAGCAATTTTTTGAACTTTCCATGCTCG
66 CGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG
* * * * *
27221023 GGAAATCGCATCATTTGGTCTAAGTAGTTTGTCATTTTATAAACAACTTTTGTTGTTTGAATTAA
130 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
*
27221088 AAACTTATTTACGTGAGAATTA
195 AAACTTATTTACGTGAGAATTG
* * * * * * *
27221110 TTTCTCTCTTGGTTCTTGGACGAAGTTCCGAACTAGTAAAACTTTTACAATTTCTTTTAGAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
*
27221175 CGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGG
66 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
* * * *
27221240 GAAATAGCATCATTTGGTCTAACTAGTTTGACATTTTGTAAACAA-CTTTGGTCTTTGAATTAAA
131 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
* *
27221304 AACTTACTTACGTGAGAATTA
196 AACTTATTTACGTGAGAATTG
* * * *
27221325 TTTCTCTCTTTGTTTTTGGACGAACTTTTGAACTTGTCAAACTTTTACGAGTTCTTTTAGAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
** ** * * * *
27221390 CTATTCCTTAAAGTATTTGAGACGATCCATTCGTTCGAG-AAATTTTCTGAACATTCCATTCTCA
66 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCG
* * * * * *
27221454 GTAAATCGCATCGTTTAGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTAAATTAA
130 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
*
27221519 GAACTTATTTAC-TAGAGAATTG
195 AAACTTATTTACGT-GAGAATTG
* * *
27221541 TTTCTTTCTTGGTTCTTGGACGAAC-TTCTGCACTTGTCAAACTTTTACGAGTTCTTTTACAACT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * *
27221605 TTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTAGAGAAATTTTCCAAACATTCCATGCTCG
65 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG
* * * * * *
27221670 AGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTTTGGTTTTTAAATTAT
130 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* *
27221735 AAACTTACTTACATGAGAATT-
195 AAACTTATTTACGTGAGAATTG
* * * * *
27221756 ATT-TCTCTTAGTTCTTGGAAGAACTTCCAACACTTGTCAAACTTTTACGAGTTCTTTTATAACT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * *
27221820 TCGGTTCCTTAAAGTATTCAAGATGATCATCCATTCTTTCGAGCAA-TATTCTGAACATTCCATA
65 TCGGTTCCTTAAAGTATTCAAGACG---ATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATG
** * *
27221884 CTCTAGAAATCGCATAATTTGGTCTAAATACTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
126 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
*
27221949 TTAAAAAACTTAATTACGTGAGAATTG
191 TT-AAAAACTTATTTACGTGAGAATTG
* * * * * * *
27221976 TTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAGA-TTTTACAACTTCTTTCACAGCT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA-ACTTTTACGAGTTCTTTTATAACT
** * * ** *
27222040 TCAATTCCTTAAAGTATACAAGACGATCCATTCCTTTGAGCAATTTCCCGAACATTTCATGCTCG
65 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG
* * * *
27222105 GGAAATCGCATCATTTGGTTTAAATAGTTTTTCATTTTGTACACAACTTTTGGTCTTTGAATTAA
130 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * **
27222170 AAACTTACTTACATGAGAATAA
195 AAACTTATTTACGTGAGAATTG
* * * *
27222192 TTACTCTCTTGGTTCTTGGGCGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * * *
27222257 CGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCGA--AATTTTTTTTGAACATTTCATGATT
66 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA--TTTTTCGAACATTCCATGCTC
* * * *
27222320 GGGAAATCGCATCATTAGGTCTAAATAGTTTGTCCTGTTGTAAACAAGTTTTGGTCTTTGAACTA
129 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
27222385 AAAACTTATTTACGTGAGAATTG
194 AAAACTTATTTACGTGAGAATTG
* * * * * *
27222408 TTTCTCTCTTGGTTCTTGGATGAACTTCCAAACATGTCAAACTTTTACTAGTTCTTTAATAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
** * * *
27222473 CGGTTCCTTAAAGTATAAAAGACGGTCCATTCCTTCAAGCAATTTTT-GAACATTCCACGCTCGG
66 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
* * *
27222537 GAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTCGTCTTTGAATTAAA
131 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AA
*
27222602 AAACTTATTTACGTGAGAGTTG
195 AAACTTATTTACGTGAGAATTG
* * * * * * *
27222624 -TT-TCTATTAGTTCTTGGATGAACTTTTGAACTTGTCAAAGTTTTACGAATTTTTTTATAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * * ** *
27222687 TGATTCCTTAAAATATTCAAGATGATCCTTTCCTTCGAGCAATTTTTCGAACATTTAATGCTCGA
66 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
* * * * * * * * *
27222752 GAAATCTCATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTT-TTATGTGGGA-GAA
131 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TTGAATTAA
* ** * *
27222815 TAGTTTCTCTACGTGAGAATTG
195 AAACTTATTTACGTGAGAATTG
* * * * *
27222837 TTTCTCTCTTGGTTCTTGGATGAAC-TTCAAAACATGTCAAACTTTTACGAGCTCTTTTACAACT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * *
27222901 TCGATTCCTTAAAGTATTC-A-A-G-T-CA--------ATCAATTTTTCGAACATTCCATACTCG
65 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG
* * *
27222953 GAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTCGTCTTTGAATTAA
130 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-A
27223018 AAAACTTATTTACGTGAGAATTG
194 AAAACTTATTTACGTGAGAATTG
* * * * *
27223041 TTT-T-TATTGGTTCTTGGACAAAC-TTCTAAACTTGTCAAAGTTTTACGAGTTCTTTTATAATT
1 TTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* *
27223103 TTGGTTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGCAA-TTTTCTGAACATT
65 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATT
27223159 TAATGAAATT
Statistics
Matches: 2850, Mismatches: 427, Indels: 125
0.84 0.13 0.04
Matches are distributed among these distances:
202 136 0.05
203 4 0.00
204 23 0.01
205 1 0.00
206 1 0.00
207 1 0.00
210 1 0.00
211 1 0.00
212 3 0.00
213 238 0.08
214 280 0.10
215 603 0.21
216 1272 0.45
217 103 0.04
218 90 0.03
219 20 0.01
220 49 0.02
221 24 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
AACTTATTTACGTGAGAATTG
Found at i:27220416 original size:432 final size:432
Alignment explanation
Indices: 27219616--27223603 Score: 4466
Period size: 429 Copynumber: 9.4 Consensus size: 432
27219606 TCTCTCTTGA
* * * * * *
27219616 TTCTTGGACA-AACTTTCGAACTAGTAAAACATTTACGAATTCTTTTACAACTTTGGTTCCTTAA
1 TTCTTGGA-AGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA
* * * * ** * * **
27219680 AGCATTCAAGACAATCCTTTCCTTTGAGCAATTTTCCAAACATTCCATGCTCGGTAAATCGCCCC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGGGAAATCGCATC
* * * * * *
27219745 AGTTT-TTCTAAAAAGTTTGTCATTATGTAAACAAGTTTTGCTCTTTCAATTAAAAGCTTATTTA
130 A-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * * * *
27219809 CGTGAGAGTTGTTTCCCTCTTGGTTCTTGGAAGAACTTTCGAAC-TAGTAAAACTTTTACGAGTT
194 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACAT-GTCAAACTTTTACGAGTT
* *
27219873 CTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGGTCCATCCCTTCGAGCAATTTTTCGAACA
258 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGCAATTTTTCGAACA
* *
27219938 TTCCATGCTCGGGAAATCGCATCATTTTGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
323 TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* *
27220003 CTTTGAATTAAAAACTTATTTACGAT-TGAATTATTTCTCTCTTGG
388 CTTTGAATTAAAAACTTATTTACGATGAGAATTATTT-TCTATTGG
* * * * *
27220048 TTCTTGGAAGAACTTCCGAACTAGTAAAACATTTATGAGTTCATTTATAACTTTGGTTCCTTAAA
1 TTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAA
*
27220113 GTATTCAAGACGATTCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGGGAAATCGCATCA
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGGGAAATCGCATCA
*
27220178 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
27220243 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTACGAGTTCTT
196 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTACGAGTTCTT
* * *
27220308 TTATAACTTTGGTTCCTTAAAGTATTTAAGACGGTCCATCCCTTCGAGCAATTTTTCGAACATTC
261 TTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGCAATTTTTCGAACATTC
* ** * *
27220373 CATGCTTGGGAAATCGCATCATTTTTTCTAAATGGTATT-TCATTTTGTAAACAAGTTTTGGCCT
326 CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT-TTGTCATTTTGTAAACAAGTTTTGGTCT
* * *
27220437 TTTAATTAAAAACTTTTTTACG-TGAGAATT-GTTTCTATTGG
390 TTGAATTAAAAACTTATTTACGATGAGAATTATTTTCTATTGG
* * * *
27220478 TTCTTAGACA-AACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAA
1 TTCTTGGA-AGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA
* * * * * *
27220542 AGCATTCAAGATGATCCTTTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGGGAAATCGCATC
** * * * * *
27220607 ATTTTTTCTAGA-AGTTTGTCATTTTGTAAACAAGTTTTGCTCTTTCAATTAAAAGCTTATTTAA
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* *
27220671 GTGAGAATCGTTTCTCTCTTGGTTCTTGGACGAACATT-CAAACGTGTCAAACTTTTACGAGTTC
195 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAACATGTCAAACTTTTACGAGTTC
* * *
27220735 TTGTATAACTCCGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCTAGCAATTTTTCGAACAT
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGCAATTTTTCGAACAT
* *
27220800 TCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAAGTTTTGGTC
324 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * * *
27220865 TTTGAATT-AAAACTTATTTAC-ATGAGAACT-GTATCTATTAG
389 TTTGAATTAAAAACTTATTTACGATGAGAATTATTTTCTATTGG
* * * * * * *
27220906 TTCTTGGACGAACTTCCAAACTTTTAAAACTTTTACGAGTTCCTTTATAACTTCGATTCCTTAAA
1 TTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAA
*
27220971 GTATTCAATG-CGATCCATTCCTTCGAGCAATTTTTTGAAC-TTTCCATGCTCGGGAAATCGCAT
66 GTATTCAA-GACGATCCATTCCTTCGAGCAATTTTCTGAACATTT-CATGCTCGGGAAATCGCAT
* * * * *
27221034 CATTTGGTCTAAGTAGTTTGTCATTTTATAAACAACTTTTGTTGTTTGAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * * * *
27221099 CGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAGTTCCGAAC-TAGTAAAACTTTTACAATTT
194 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACAT-GTCAAACTTTTACGAGTT
* * *
27221163 CTTTTAGAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCGAACA
258 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGCAATTTTTCGAACA
* * * *
27221228 TTCCATGCTCGGGAAATAGCATCATTTGGTCTAACTAGTTTGACATTTTGTAAACAA-CTTTGGT
323 TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * *
27221292 CTTTGAATTAAAAACTTACTTACG-TGAGAATTATTTCTCTCTTTG
388 CTTTGAATTAAAAACTTATTTACGATGAGAATTATTT-TCTATTGG
* * ** * *
27221337 TTTTTGGACGAACTTTTGAACTTGTCAAACTTTTACGAGTTCTTTTAGAACTTCT-ATTCCTTAA
1 TTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAA
** * * * * * *
27221401 AGTATTTGAGACGATCCATTCGTTCGAGAAATTTTCTGAACATTCCATTCTCAGTAAATCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGGGAAATCGCATC
* * * * * *
27221466 GTTTAGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTAAATTAAGAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* *** *
27221531 -TAGAGAATTGTTTCTTTCTTGGTTCTTGGACGAACTTCTGCACTTGTCAAACTTTTACGAGTTC
195 GT-GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTACGAGTTC
* * ** * * * *
27221595 TTTTACAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTAGAGAAATTTTCCAAACAT
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGCAATTTTTCGAACAT
* * * *
27221660 TCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTTTGGTT
324 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * * * *
27221725 TTTAAATTATAAACTTACTTAC-ATGAGAATTA-TTTCTCTTAG
389 TTTGAATTAAAAACTTATTTACGATGAGAATTATTTTCTATTGG
* *
27221767 TTCTTGGAAGAACTTCCAACACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
1 TTCTTGGAAGAACTTCCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA
* * * * * **
27221832 AGTATTCAAGATGATCATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCTAGAAATCGC
65 AGTATTCAAGACG---ATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGGGAAATCGC
* * *
27221897 ATAATTTGGTCTAAATACTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAACTTAA
127 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTAT
* * * *
27221962 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAGA-TTTTACAA
191 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA-ACTTTTACGA
* * * * ** * * * **
27222026 CTTCTTTCACAGCTTCAATTCCTTAAAGTATACAAGACGATCCATTCCTTTGAGCAATTTCCCGA
255 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGCAATTTTTCGA
* * * * *
27222091 ACATTTCATGCTCGGGAAATCGCATCATTTGGTTTAAATAGTTTTTCATTTTGTACACAACTTTT
320 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * *
27222156 GGTCTTTGAATTAAAAACTTACTTAC-ATGAGAATAATTACTCTCTTGG
385 GGTCTTTGAATTAAAAACTTATTTACGATGAGAATTATT-TTCTATTGG
** * *
27222204 TTCTTGGGCGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAA
1 TTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAA
* * * * *
27222269 GTATTCAAGACGATCAATTTCTTCGA--AATTTTTTTTGAACATTTCATGATTGGGAAATCGCAT
66 GTATTCAAGACGATCCATTCCTTCGAGCAA--TTTTCTGAACATTTCATGCTCGGGAAATCGCAT
* * * *
27222332 CATTAGGTCTAAATAGTTTGTCCTGTTGTAAACAAGTTTTGGTCTTTGAACTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* *
27222397 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACATGTCAAACTTTTACTAGTTC
194 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTACGAGTTC
* ** *
27222462 TTTAATAACTTCGGTTCCTTAAAGTATAAAAGACGGTCCATTCCTTCAAGCAATTTTT-GAACAT
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGCAATTTTTCGAACAT
* * * *
27222526 TCCACGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTCGTC
324 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * *
27222591 TTTGAATTAAAAAACTTATTTACG-TGAGAGTT-GTTTCTATTAG
389 TTTGAATT-AAAAACTTATTTACGATGAGAATTATTTTCTATTGG
* ** * * * *
27222634 TTCTTGGATGAACTTTTGAACTTGTCAAAGTTTTACGAATTTTTTTATAACTTTGATTCCTTAAA
1 TTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAA
* * * * * *
27222699 ATATTCAAGATGATCCTTTCCTTCGAGCAATTTT-TCGAACATTTAATGCTCGAGAAATCTCATC
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTTCATGCTCGGGAAATCGCATC
* * * * * * * * * ** * *
27222763 ATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTT-TTATGTGGGA-GAATAGTTTCTCTA
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TTGAATTAAAAACTTATTTA
* * *
27222826 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCAAAACATGTCAAACTTTTACGAGCTC
194 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTACGAGTTC
* * *
27222891 TTTTACAACTTCGATTCCTTAAAGTATTC-A-A--GT-CA--------ATCAATTTTTCGAACAT
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGCAATTTTTCGAACAT
* * * *
27222943 TCCATACTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTCGTC
324 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
*
27223008 TTTGAATTAAAAAACTTATTTACG-TGAGAATTGTTTT-TATTGG
389 TTTGAATT-AAAAACTTATTTACGATGAGAATTATTTTCTATTGG
** * *
27223051 TTCTTGGACA-AACTTCTAAACTTGTCAAAGTTTTACGAGTTCTTTTATAATTTTGGTTCCTTAA
1 TTCTTGGA-AGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA
* * * *
27223115 AGTATTCAAGACGATCCTTTCCTTCGAGCAATTTTCTGAACATTT-A--AT---GAAATTGTATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGGGAAATCGCATC
* *
27223174 ATTTGTTCT-AA-AG--AG---TTTT-T---C-A----T-G---TTG---TAAACAACTT-TTTA
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA-AACTTATTTA
*
27223215 CGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTACGAGTTC
194 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTACGAGTTC
* * * * * *
27223280 TTTTATAACTTCGGTTCGTTAAAGTATACAAGATGGTTCATTCCTTCAAGCAATTTTTCGAATAT
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGCAATTTTTCGAACAT
** *
27223345 TCCACACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAA-AATGTTTTGGT
324 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGT
* * *
27223409 CTCTGAATTAAAAAACTTATTTAC-ATAAGAATT-GTTTCTATTGG
388 CTTTGAATT-AAAAACTTATTTACGATGAGAATTATTTTCTATTGG
* *
27223453 TTCTTGGATG-A------AACTTGTCAAAGTTTTAC--G--------TAACTTTGGTTCCTTAAA
1 TTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAA
* * * *
27223501 GTGTTCAAGACGATCCTTTCCTTCGAGCAATTTT-TCGAACATTTAATGCTCGGGAAATCGTATC
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTTCATGCTCGGGAAATCGCATC
* * *
27223565 ATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTT
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
27223604 TTACGTGAGA
Statistics
Matches: 3064, Mismatches: 402, Indels: 205
0.83 0.11 0.06
Matches are distributed among these distances:
384 1 0.00
385 58 0.02
386 1 0.00
388 1 0.00
389 91 0.03
390 4 0.00
391 21 0.01
392 2 0.00
393 5 0.00
394 2 0.00
395 19 0.01
398 4 0.00
399 2 0.00
400 1 0.00
401 6 0.00
402 117 0.04
403 2 0.00
404 4 0.00
407 1 0.00
409 2 0.00
410 2 0.00
411 16 0.01
414 1 0.00
416 10 0.00
417 200 0.07
418 4 0.00
424 2 0.00
425 2 0.00
427 3 0.00
428 166 0.05
429 551 0.18
430 298 0.10
431 460 0.15
432 544 0.18
433 85 0.03
434 89 0.03
435 205 0.07
436 59 0.02
437 23 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (432 bp):
TTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAA
GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGGGAAATCGCATCA
TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTACGAGTTCTT
TTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGCAATTTTTCGAACATTC
CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
TGAATTAAAAACTTATTTACGATGAGAATTATTTTCTATTGG
Found at i:27228558 original size:216 final size:214
Alignment explanation
Indices: 27228184--27229254 Score: 1258
Period size: 216 Copynumber: 4.9 Consensus size: 214
27228174 GCATTATCCC
* * * * * *
27228184 TTTACAAAATTACAAACTATTTAGACCAAATGATGTGACTTCCCGAGAATAGAATGTTC-AGAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGGATGTTCGA-AAA
* * * *
27228248 ATTACTCGAAGGAATGGATCATCTTGAATGCTTTAAGGAATGGAAGTTATAAAAGAACTCCTAAA
65 ATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAA
* * *
27228313 TGTTTGA-ATAGTTCAGAAGTTCATCCAAGAACCAAAAGAGAAACATTTCTCACGTAAATAAGTT
130 AGTTT-ACA-AGTTCAGAAGTTCA-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
27228377 TTTATTTCAAAGACCAAAAGTTG
192 TTTAATTCAAAGACCAAAAGTTA
*
27228400 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGGATGTTCGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGGATGTTCGAAAAA
* ** * * *
27228465 TTGCTCGAAGAAATGCCTCATCTTAAATACTTTATGGAA-CTGAAGTTATAAAAGAACTCATAAA
66 TTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCGTAAA
* * *
27228529 AGTTTATCAAGTTCAGAGGTTCATCCAAGAACCAAGTGAGAAACATTTCTCACGTAAATAAGTTT
130 AGTTTA-CAAGTTCAGAAGTTCA-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
*
27228594 TTAATTCAAAGACCAAAAGTTG
193 TTAATTCAAAGACCAAAAGTTA
* *
27228616 TTTATAAAATGACAAACTATTTAGACCAAATGATACGATTTCCCGAGCAT-GGATTGTTC-ATAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGGA-TGTTCGA-AA
* * * *
27228679 AATTTCTCGAATGAATGGATCGTCTTGAATACTTTAGGGAA-CTGAAGTTATAAAAGAACTCGTA
64 AATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCGTA
* * * *
27228743 AAAGCTTGACAAGTTCGGAAGTTCGACCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGA
128 AAAG-TTTACAAGTTCAGAAGTTC-ACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * *
27228808 TTTTATTTTAATGACCAAAAATTA
191 TTTTAATTCAAAGACCAAAAGTTA
* * * * * *
27228832 TTTACAAAGTGACAAACTATTTAGACCAAATAATGTGATTTCCCGAG-ATTGGAATGTTTGGAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA-TGGGATGTTCGAAAA
** *
27228896 ATTGCTCGAAGGAATGGATCGCCTTGAATACTTTAAGGAATCGAAGTTATAAAATAACTCGTAAA
65 ATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAA
* *
27228961 AGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTTACGTAATTAAGTTT
130 AGTTT-ACAAGTTCAGAAGTTC-ACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
*
27229026 TTAATTCAAAGAACAAAAGTTA
193 TTAATTCAAAGACCAAAAGTTA
* *
27229048 TTTA-AAAATAATAAACTATTTAGACCAAATGATGCGATTTCCCGAAGAGCGATTTCCCGAAGAT
1 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC---GAGC-A--T------G--
*
27229112 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATA
52 GG-ATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATA
* * * * *
27229177 AAAGAACTCGTAAATGCTTGACAAGTTCAGAAGTTCGGCCAAGAACCAAGAGATAAACAACTCTC
116 AAAGAACTCGTAAAAG-TTTACAAGTTCAGAAGTTC-ACCAAGAACCAAGAGAGAAACAATTCTC
27229242 ACGTAAATAAGTT
179 ACGTAAATAAGTT
27229255 ATAAAAGATT
Statistics
Matches: 738, Mismatches: 88, Indels: 44
0.85 0.10 0.05
Matches are distributed among these distances:
215 42 0.06
216 553 0.75
217 9 0.01
218 3 0.00
220 1 0.00
221 2 0.00
227 1 0.00
229 1 0.00
230 124 0.17
231 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (214 bp):
TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGGATGTTCGAAAAA
TTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAA
GTTTACAAGTTCAGAAGTTCACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
ATTCAAAGACCAAAAGTTA
Found at i:27229101 original size:15 final size:15
Alignment explanation
Indices: 27229081--27229110 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
27229071 ACCAAATGAT
27229081 GCGATTTCCCGAAGA
1 GCGATTTCCCGAAGA
27229096 GCGATTTCCCGAAGA
1 GCGATTTCCCGAAGA
27229111 TGGAATGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (15 bp):
GCGATTTCCCGAAGA
Found at i:27231800 original size:200 final size:198
Alignment explanation
Indices: 27231450--27231841 Score: 511
Period size: 200 Copynumber: 2.0 Consensus size: 198
27231440 GCAAAAGGTT
* * * * * * *
27231450 TTTACAAAATGACAAACTATTTAGACCAAATTATGCGGTTTTTGAGCATGGAATGTTTTGAAAAT
1 TTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCTGAGCACGGAATGATTCGAAAAT
* *
27231515 TGCTCGAAAGAATGGACCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAA
66 TGCTCGAAAGAATGGACCATCTTGAATAATTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAA
* * * * *
27231580 TTTGACATGTTCGGAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTCAG
131 CTTGACAAGTTCGAAAGTTCGACCAAGAACCAAGAAAGAAACAACTCTCACGTAAATAAGTTCAG
27231645 TTG
196 TTG
27231648 TTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCACGGAAT-ATTCGAAAA
1 TTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTT-CTGAGCACGGAATGATTCG-AAA
* * * *
27231712 ATT-ATCTTAAAGGAATGGATCATCTTGAATAATTTAAGGAA-CAGAAGTTATAATAGAACTCAT
64 ATTGCTC-GAAA-GAATGGACCATCTTGAATAATTTAAGGAACCA-AAGTTATAAAAGAACTCAT
* * * * *
27231775 ACAAGCTTGACAAGTTCGAAAGTTCGGCTAAGAACCAAGAAAGAAACAACTCTCATGTAAATAAG
126 AAAAACTTGACAAGTTCGAAAGTTCGACCAAGAACCAAGAAAGAAACAACTCTCACGTAAATAAG
27231840 TT
191 TT
27231842 TTTAATTCAA
Statistics
Matches: 166, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
198 43 0.26
199 22 0.13
200 101 0.61
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (198 bp):
TTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCTGAGCACGGAATGATTCGAAAAT
TGCTCGAAAGAATGGACCATCTTGAATAATTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAA
CTTGACAAGTTCGAAAGTTCGACCAAGAACCAAGAAAGAAACAACTCTCACGTAAATAAGTTCAG
TTG
Found at i:27232018 original size:216 final size:216
Alignment explanation
Indices: 27231643--27236509 Score: 6385
Period size: 216 Copynumber: 22.6 Consensus size: 216
27231633 AAATAAGTTC
* * * *
27231643 AGTTGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCACGGAATATTCG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* ** * * *
27231708 AAAAATTATCTTAAAGGAATGGATCATCTTGAATAATTTAAGGAA-CAGAAGTTATAATAGAACT
66 AAAAATT-GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACT
* * * * * * *
27231772 CATACAAGCTTGACAAGTTCGAAAGTTCGGCTAAGAACCAAGAAAGAAACAACTCTCATGTAAAT
129 CGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAAT
27231837 AAGTTTTTAATTCAAAGACCAAA
194 AAGTTTTTAATTCAAAGACCAAA
* * * * *
27231860 AGTTGTTTACAAAATGATAAAC-ACTTTAGACCAAATGGTGCGATTTCTCAAGCATGTAATGTTC
1 AGTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * *
27231924 GAAAAGTTGCTCGAAGGAATGGATTGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
65 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTC
* * * *
27231989 ATATAAGTTTGACAAGTTCAGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCATGTAAATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
* *
27232054 AGTTTTTAATTCAAATAACAAA
195 AGTTTTTAATTCAAAGACCAAA
* ** * *
27232076 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTT-TTGAGTATGGAATGTTTG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * *
27232140 AAAAATTGCTCGATGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* * * *
27232205 TAAAAGTTTGACGAGTTCGAAAGTTC-GACAAGAACCAAGAGAGAAACAACTCTCACGTGAATAA
131 TAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAA
* **
27232269 GTTTTTATTTCATTGACCAAA
196 GTTTTTAATTCAAAGACCAAA
* * * * ** * *
27232290 A-TTGTTTACAAAGTTAGAAACTATTTGGACCAAATGATGCGATTTATCGAGCTTGGGATGATT-
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTC
* * *
27232353 GGAAAATTGCTCGAAGGAATGGACCGTCTTGAATGCTTTAAGGAATCGAAGTTATAAAAGAACTC
65 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTC
* *
27232418 TTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
27232483 AGTTTTTAATTCAAAGACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* ** * *
27232505 AGTTGTTTACAAAATGACAAAGTATTTAGACCAAATGAAACGATTTCTCGAGCTTGGAATGTTCG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * **
27232570 AAAAATTGTTCAAAGGAATGGATTGTCTTGAATACTTTATGGAATCGATAAATATAAAAGAACTC
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGA-AGTTATAAAAGAACTC
* ** ** *
27232635 GTAAAAGTTTGGCAAGTTCAAAAGTTTAGCCAAGAACCAAGAGAGAAACAACTGTCACGTAAATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
* *
27232700 A-ATTTTAATTCAAATACC-AA
195 AGTTTTTAATTCAAAGACCAAA
** * * * * * *
27232720 TTTTTTTTACAAAATGACAAACTATTTAGAACAAATGATCCAACTTT-TCGAGCATGGAATGTTT
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCCCGAGCATGGAATGTTC
* * * * * *
27232784 GAAAAATTTCAC-AACGAAATGGATCATCTTGAATAATATAAGGAATCGAAGTTATAAAAGAACT
65 GAAAAATTGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
* * * *
27232848 CGTAAAAGTTTGACAAGTTTGGAAGTTTGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
129 CGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAAT
27232913 AAGTTTTTAATTCAAAGACCAAA
194 AAGTTTTTAATTCAAAGACCAAA
* * *
27232936 TGTTGTTTACAAAATGACAAACTATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTTG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * *
27233001 GAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA-CAGAAGTTATAACAGAACTC
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* * * * *
27233065 GTAAAAGCTTGACAAGTTCGGAAGTTCAGCCAAGAACCAAGAGGGAAACAACTCTCATGTAGATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
27233130 AGTTTTTAATTCAAAGACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * *
27233152 AGTTGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGAAATGTTCG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
** *
27233217 AAAAATTGCTCGAAGGAATGGATTATCTTGAATACTTTAAGGAA-CATAAGTTATAAAAGAACTC
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* *
27233281 GTAAAAGTTTGACAAGTTTGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
27233346 AGTTTTTAATTCAAAGACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * *
27233368 AGTTGTTTACAAAATGACAAAGTATTTAGACCAAATGATACGATTTCCCGAGCTTGGAATGTTCG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * **
27233433 AAAAATTGTTCAAAGGAATGGATTGTCTTGAATACTTTATGGAATCGATAAATATAAAAGAACTC
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGA-AGTTATAAAAGAACTC
* * * * *
27233498 GTAAAAGTATGGCAAGTTC-AAACGTTTGGCCAAGAACCAAGAGAGAAACAACTATCACGTAAAT
130 GTAAAAGTTTGACAAGTTCGGAA-GTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAAT
*
27233562 AA-ATTTTAATTCAAAGACC-AA
194 AAGTTTTTAATTCAAAGACCAAA
** * * * *
27233583 TTTTTTTTACAAAATGACAAACTATTTAGAACAAATGATCCAATTTCCCGAGCATGGAATGTTCG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * *
27233648 AAAAATTTCACGACGGAATGGATCTTCTTGAATAATTTAAGGAATCGAAGTTATAAAAGAACTCG
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* * *
27233713 TAAAAGTTTGACAAGTTCGGAAGTTTGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
131 TAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAA
27233778 GTTTTTAATTCAAAGACCAAA
196 GTTTTTAATTCAAAGACCAAA
* * *
27233799 TGTTGTTTACAAAATGACAAACTATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTTG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * *
27233864 GAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA-CAGAAGTTATAACAGAACTC
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* * * * * *
27233928 GTAAAAGCTTGACAAGTTCGGAAGTTCAGCCAAGAACCAAGAGGGAAACAACTTTCATGTAGATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
27233993 AGTTTTTAATTCAAAGACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * *
27234015 AGTTATTTACAAAAAGACAAACTATTTAGACCAAATGATACGATTTCCCGAGCATGAAATGTTCG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
** * *
27234080 AAAAATTGCTCGAAGGAATGGATTATCTTGAATACTTTAAGGAA-CATAAGTTATAATAGAACTC
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* *
27234144 GTAAAAGTTTGACAAGTTCGGAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
27234209 AGTTTTTAATTCAAAGACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * * *
27234231 TGTTGTTTACAAAATGACAAACTATTTAAACTAAATGATGCCATTTCCCGAGCATGGAATGTTTG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * *
27234296 AAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAA-CTGAAGTTATAAATGAACTC
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* * *
27234360 GTAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACCAAGAGAGAAACAACTCTCACGTGAATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
* **
27234425 AGTTTTTATTTCATTGACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * * * * *
27234447 AATTGTTTACAAAGTGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCTTGTAAT-TATT
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT-TC
* * *
27234511 GGAAAATTGCTTGAAGGAATGGACCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTC
65 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTC
* * * *
27234576 ATAAAAGTTTGACAAGTTCGGAAGTTTGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
27234641 AGTTTTTAATTCAAAGACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * * *
27234663 AGTTGTTTACAAAATGACAAAGTATTTAGACCAAAGGATACGATTTCCCGAGCATGGATTGTTGG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * **
27234728 AAAAATTGGTCAAAGGAATGGATCGTTTTGAATACTTTATGGAATCGAAAATATAAAAGAACTCG
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* *
27234793 TAAAAGTTTGACAAGTTCGGAAGTTTGGCCAAGAACCAAGAGAGAAACAACTCTCACGTTAATAA
131 TAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAA
* * *
27234858 ATTTATAATTCAATGACC-AA
196 GTTTTTAATTCAAAGACCAAA
* * * * *
27234878 ATTTTTTTATAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGAATGGAATGTTCG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * *
27234943 AAAAATTTCAC-AACGGAATGGATAGTCTTGAATACTTTACGGAATCGAAGTTATATAAGAACTC
66 AAAAATTGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTC
* *
27235007 GTAAAAGTTTGACAAGTTCGGAAGTTTGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
* *
27235072 AATTTTTAATTCAAACACCAAA
195 AGTTTTTAATTCAAAGACCAAA
* * * *
27235094 AGTTGTTTACAAAATTACAAACTATTTAGACCAAATGATACGATTTCCCGAGCTTGAAATGTTCG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * * * * **
27235159 AAAAATTGTTCAAATGAATGGATTGTCTTAAATACTTTATGGAATCAAAAATATAAAAGAACTCG
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* *
27235224 TAAAAGTTTGACAAGTTCGAAAGTTTGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAA
131 TAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAA
* * *
27235289 -ATTTAAATTCAAAGACCAAT
196 GTTTTTAATTCAAAGACCAAA
** * * *
27235309 TTTTTTTTACAAAATGACAAACTATTTAGAACAAATGATCCGATTTCCCGAGCATGGAATGTTCG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * * *
27235374 GAAAATTTCACGATGAAATGGATCGTCTTGAATAATTTAAGGAATCGAAGTTATAAAAGAACTCG
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* * *
27235439 TAAAAGTTTGACAAGTTCGGAAGTTTGGCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAA
131 TAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAA
27235504 GTTTTTAATTCAAAGACCAAA
196 GTTTTTAATTCAAAGACCAAA
* * * * *
27235525 TGTTATTTACAAAATGACAAACTATTTAGACTAAATGATGCGATTTTCCGAGCATGGAATGTTTG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * *
27235590 GAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA-CAGAAGTTATAATAGAACTC
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* * * * * * **
27235654 ATAAAAGATTGACAAGTTCGAAAGTTCAGCCAAGAACTAAGAGGGAAACAACTCTCATTTAAATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
*
27235719 AGTTTATAATTCAAAGACCAAA
195 AGTTTTTAATTCAAAGACCAAA
*
27235741 AGTTGTTTACAAAA-GACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * *
27235805 GAAAATTGCTCGAAGGAATGTGGATCATATTGAATACTTTAAGGAA-CATAAGTTATAATAA-AA
66 AAAAATTGCTCGAAGGAA--TGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAA-AAGAA
* * * * *
27235868 CTCGTAAAAGTTTGACAAGTTTGAAAGTTTGGCCAAGAACCAAGAGAGAATCAACTCTCATGTAA
127 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAA
*
27235933 ATAAGTTTTTAATTTAAAGACCAAA
192 ATAAGTTTTTAATTCAAAGACCAAA
* * *
27235958 AGTTGTTTACAAAATGATAAAC-ACTTTAGACCAAATGATGCGATTTCTCGAGCATGTAATGTTC
1 AGTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * *
27236022 GGAAAATTGCTCGAAGAAATGGATTGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTC
65 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTC
* * **
27236087 GTAAAAGTTTGATAAGTTCGGAAGTTCGGCCAAAAACTGAGAGAGAAACAACTCTCACGTAAATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
*
27236152 AGTTTTTAATTCAAATACCAAA
195 AGTTTTTAATTCAAAGACCAAA
** *
27236174 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TTGAGCATGGAATGTTCA
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * *
27236238 AAAAATTGCTTGATGGAATGGATCGCCTTGAATATTTTAAGGAA-CTGAAGTTATAAAAGAACTC
66 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* * *
27236302 GTAAAAGTTTGACAAGTTCGAAAGTTTGGCCAAGAACCAAGAGAGAAACAACTCTCACGTGAATA
130 GTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATA
* * * *
27236367 AGTTCTCATTTCATTA-ACCAAA
195 AGTTTTTAATTCA-AAGACCAAA
** * * * * * *
27236389 AACTATTTACAAAGTGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCTTTGAATGTTCG
1 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
** * * * *
27236454 GCAAATTGATC-AATGGACTGGATCTTCTTGAATACTTTAAGGAATTGAAGTTATAA
66 AAAAATTGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAA
27236510 TTTATCCATA
Statistics
Matches: 4088, Mismatches: 518, Indels: 89
0.87 0.11 0.02
Matches are distributed among these distances:
213 39 0.01
214 293 0.07
215 1006 0.25
216 2343 0.57
217 345 0.08
218 62 0.02
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (216 bp):
AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
TAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAA
GTTTTTAATTCAAAGACCAAA
Done.