Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 88 of 135
Found at i:29905313 original size:431 final size:428
Alignment explanation
Indices: 29904490--29905623 Score: 1115
Period size: 431 Copynumber: 2.6 Consensus size: 428
29904480 TTTTTGACAA
* * * * * * * *
29904490 GTTCGGAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAGGTTTTTATTTTACA
1 GTTCGGAAGTTCGTCCAAG-ACGAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
*** * * * * * * * * * * *
29904555 GTTCAAAACTTGTTTACAAAATGATAAACTGTGTT-GACAAAATGATGTGATTTCTCGAGCATGG
65 AACCAAAACAT-TTCACAAAATGACAAACTAT-TTAGGCCAAACGATGCGATTTCACGAGCAAGA
** * * * **
29904619 GGTGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAATAGAAGTTATAAA
128 AATGTCTCGAAAATT-CTCGAA-GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
* * * * * ** *
29904684 AGAACTCGTAAAAGTTTCACATGTCCGAAAA-TT-AGTCCTAGAATGAAGAGAGAAACAATTCTT
191 AGAACTAGTAAAAGTTTGA-AAGTTC-AAAAGTTCA-TCCAAGAACCAAGAGAGAAACATTTCTT
* * *
29904747 ACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAACTGACAAACTACTTAGACCAA
253 ACGTAAATAAGTTTTTAATTCAAACACCAAAACCTATTTACAAAATGACAAACTACTTAGACCAA
* * *
29904812 ATTATGTGATTTCCCGAGCATGGACTGCTCGAAAAATTGCTCGAACGAATAGATCATCTTGAAAA
318 ATGATGCGATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCGAACGAATAGATCATCTTGAAAA
* * *
29904877 CTTTT-AGGAACCGAAGTTATAAAAGAAATGGCAAAAGTTTGACAA-
383 CTTTTAAGGAACCGAAGTTATAAAACAAATCGCAAAAGTTT-AAAAT
* * * *
29904922 GTTCGGATGTTCGTCCAAG-CGTCAAGAGAGAAACAATTCTTACGTAGATAAGTTTTTAATTCAA
1 GTTCGGAAGTTCGTCCAAGACG--AAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC-A
* * * * * * * *
29904986 AAAACCAAAACATTTCACGAATTGGCAAACTATTTAGGCCATACGGTGCGATTTTACGAGCATGG
63 AAAACCAAAACATTTCACAAAATGACAAACTATTTAGGCCAAACGATGCGATTTCACGAGCAAGA
**
29905051 AATG-CTCGAAAAATTCTCGAAGCAATGGATCGTCTTGAATACTTTAAGTTACCGAAGTTATAAA
128 AATGTCTCG-AAAATTCTCGAAG-AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
* *
29905115 AGAACTAGTAAAAGTTTGAAAGGTTCAAAAGTTCATCCAACAACCAAGAGAGAAACATTTCTCAC
191 AGAACTAGTAAAAGTTTGAAA-GTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACATTTCTTAC
* * * *
29905180 GTAAATAAGTTTTTAATTGAAAGACCAAATCCTATTTACAAAATGACAAACTATTTAGACCAAAT
255 GTAAATAAGTTTTTAATTCAAACACCAAAACCTATTTACAAAATGACAAACTACTTAGACCAAAT
* * * * *
29905245 GATGCGATTTCCCGAGCATGGAAAT-CTTTGAAAAATTTC-CGAAGGAATGGATCGTCTT-AAAT
320 GATGCGATTTCCCGAGCATGG-AATGC-TCGAAAAATTGCTCGAACGAATAGATCATCTTGAAA-
* * * *
29905307 ACTTTTAAGGAATCGAAGTTATAGAACAACTCGTAAAAGTTTAAAAT
382 ACTTTTAAGGAACCGAAGTTATAAAACAAATCGCAAAAGTTTAAAAT
* *
29905354 GTTCGGAAGTTCGTCTAAGAACGAAAAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAA
1 GTTCGGAAGTTCGTCCAAG-ACGAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* ** * *
29905419 GACCAAAACATTTTTCAAAATGACAAACTATTTAGGCCAAATGATGCGATTTCCCGAGCAAGAAA
65 AACCAAAACATTTCACAAAATGACAAACTATTTAGGCCAAACGATGCGATTTCACGAGCAAGAAA
* * * * * *
29905484 TGTTTCGAAAATAGCTCGAAAGAATGGATCGCCATGAATACTTTCAGGAACCAAAGTTATAAAA-
130 TGTCTCGAAAAT-TCTCG-AAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * ** * *
29905548 AAATTGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTT-TTAC-
193 AACTAGTAAAAGTTTGA-AAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAAC-ATTTCTTACG
*
29905611 AAAATAAGTTTTT
256 TAAATAAGTTTTT
29905624 GACAAGTTCG
Statistics
Matches: 576, Mismatches: 105, Indels: 44
0.79 0.14 0.06
Matches are distributed among these distances:
430 22 0.04
431 304 0.53
432 236 0.41
433 12 0.02
434 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (428 bp):
GTTCGGAAGTTCGTCCAAGACGAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAA
ACCAAAACATTTCACAAAATGACAAACTATTTAGGCCAAACGATGCGATTTCACGAGCAAGAAAT
GTCTCGAAAATTCTCGAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
TAGTAAAAGTTTGAAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACATTTCTTACGTAAAT
AAGTTTTTAATTCAAACACCAAAACCTATTTACAAAATGACAAACTACTTAGACCAAATGATGCG
ATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCGAACGAATAGATCATCTTGAAAACTTTTAAG
GAACCGAAGTTATAAAACAAATCGCAAAAGTTTAAAAT
Found at i:29905656 original size:61 final size:62
Alignment explanation
Indices: 29905560--29905747 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
29905550 ATTGTAAAAG
* * *
29905560 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTTTTAC-AAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTT
* * * *
29905621 TTTGACAAGTTCGGAAGTTCATCCAAGAACTAAGAGAGAAACAATATTCACGTGAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTT
** * * *
29905683 TTTGACAAGTTCAAAATTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTT
29905745 TTT
1 TTT
29905748 TAATTCAGCG
Statistics
Matches: 110, Mismatches: 16, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
61 46 0.42
62 64 0.58
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTT
Found at i:29905996 original size:62 final size:61
Alignment explanation
Indices: 29905899--29906086 Score: 268
Period size: 62 Copynumber: 3.0 Consensus size: 61
29905889 AATCGTAAAA
* * * *
29905899 TTTGATAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29905961 TTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAGTACTCACGTGAATAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29906023 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
29906084 TTT
1 TTT
29906087 AAGTCAGCGA
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
61 30 0.27
62 81 0.73
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGGAAGTTCATCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29906266 original size:340 final size:337
Alignment explanation
Indices: 29905354--29906365 Score: 1552
Period size: 339 Copynumber: 3.0 Consensus size: 337
29905344 AGTTTAAAAT
* * * * * **
29905354 GTTCGGAAGTTCGTCTAAGAACGAAAAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAA
1 GTTCGGAAGTTCGTCCAAGAAC-CAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
* * * * * *
29905419 GACCAAAACATT-TTT-CAAAATGACAAACTATTTAGGCCAAATGATGCGATTTCCCGAGCAAGA
65 GACCAAAAC-TTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGG
* ** *
29905482 AATGTTTCGAAAATAGCTCGAAA-GAATGGATCGCCATGAATACTTTCAGGAACCAAAGTTATAA
129 AATG-TTCGAAAATTGCTC-AAAGGAATGGATCATCTTGAATACTTTCAGGAA-CAAAGTTATAA
* * *
29905546 AA-AAATTGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTTTTA
191 AAGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTA
* *
29905610 CA-AAATAAGTTTTTGACAAGTTCGGAAGTTCATCCAAGAACTAAGAGAGAAACAATATTCACGT
256 CATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGT
29905674 GAATAAGTTTTTGACAA
321 GAATAAGTTTTTGACAA
** *
29905691 GTTCAAAATTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTTAATTCAG
1 GTTCGGAAGTTCGTCCAAGAACC-AGAGAGAACCAATTCTCACGTAAATAAG-TTTTTAATTCAG
*
29905756 CGACCAAAACTTGTTTACAGAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGG
64 CGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGG
* *
29905821 AATGTTCGAAAAATTGCTCAATGGAATGGATCATCTTGAATACTTTCAGGAACTGAAGTTATAAA
129 AATGTTCG-AAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAAC-AAAGTTATAAA
*
29905886 AGAAATCGTAAAA-TTTGATAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTAC
192 AGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
*
29905950 ATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAGTACTCACGTG
257 ATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTG
29906015 AATAAGTTTTTGACAA
322 AATAAGTTTTTGACAA
* *
29906031 GTTCGGAAGTTCATCCAAGAACCAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAGTCAGCG
1 GTTCGGAAGTTCGTCCAAGAACCAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGCG
29906096 ACCAAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGA
66 ACC-AAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGA
*
29906161 ATGTTCGAAACATTGCTCAAAGGAATGGATCATCTTGAATACCTTT-AGGAATCAAATTTATAAA
130 ATGTTCGAAA-ATTGCTCAAAGGAATGGATCATCTTGAATA-CTTTCAGGAA-CAAAGTTATAAA
29906225 AGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
192 AGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
*
29906290 ATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTA
257 ATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTG
29906355 AATAAGTTTTT
322 AATAAGTTTTT
29906366 TAATTCAAGG
Statistics
Matches: 619, Mismatches: 42, Indels: 25
0.90 0.06 0.04
Matches are distributed among these distances:
337 45 0.07
338 49 0.08
339 291 0.47
340 234 0.38
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (337 bp):
GTTCGGAAGTTCGTCCAAGAACCAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGCG
ACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGAA
TGTTCGAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACAAAGTTATAAAAGAA
ATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAA
ATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGAATA
AGTTTTTGACAA
Found at i:29906336 original size:62 final size:62
Alignment explanation
Indices: 29906239--29906365 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
29906229 ATCGTAAAAG
* * * *
29906239 TTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACATAAATAAGTT
* *
29906301 TTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACATAAATAAGTT
29906363 TTT
1 TTT
29906366 TAATTCAAGG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACATAAATAAGTT
Found at i:29906468 original size:279 final size:279
Alignment explanation
Indices: 29905961--29906644 Score: 1045
Period size: 279 Copynumber: 2.5 Consensus size: 279
29905951 TAAATAAGTT
* * * * * *
29905961 TTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAGTACTCACGTGAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
* * *
29906026 GACAAGTTCGGAAGTTCATCCAAGAACCAGAGAGAACCAATTCTCACGTAAATAAG-TTTTTAAG
66 GACAAGTTCGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTAAG
* *
29906090 TCAGCGACCAAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAG
131 TCAGCGACCAAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAACTATGCGATTTCCCGAG
* * *
29906155 CATGGAATGTTCGAAACATTGCTCAAAGGAATGGATCATCTTGAATACCTTT-AGGAATCAAATT
196 CATGGAATATTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATA-CTTTCAGGAATCAAAGT
29906219 TATAAAAGAAATCGTAAAAG
260 TATAAAAGAAATCGTAAAAG
* *
29906239 TTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
*
29906304 GACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTTAA
66 GACAAGTTCGGAAGTTCGTCCAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTAA
* *
29906369 TTCAAG-GACC-AAAACTTGTTTAGAAAAAGACAAACTATTTAGACCAAACTATGCGATTTCCCG
130 GTC-AGCGACCAAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAACTATGCGATTTCCCG
* *
29906432 AGCATGGAATATTCGAAAAATTGCTCGAAA-GAATGGATCATCTTGAATATTTTCAGGAATCGAA
194 AGCATGGAATATTCGAAAAATTGCTC-AAAGGAATGGATCATCTTGAATACTTTCAGGAATCAAA
29906496 GTTATAAAAGAAATCGTAAAAG
258 GTTATAAAAGAAATCGTAAAAG
* *
29906518 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGTGAGAACCAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
* ** *
29906583 GATAAGTTCGGGTGTTCGTCCAAGAACCAAGAGAGACACAATTCTCACGTAAATAAGTTTTT
66 GACAAGTTCGGAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
29906645 GACAAGTTTG
Statistics
Matches: 370, Mismatches: 30, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
278 86 0.23
279 265 0.72
280 17 0.05
281 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (279 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
GACAAGTTCGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTAAG
TCAGCGACCAAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAACTATGCGATTTCCCGAG
CATGGAATATTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAATCAAAGTT
ATAAAAGAAATCGTAAAAG
Found at i:29906798 original size:61 final size:62
Alignment explanation
Indices: 29906518--29906826 Score: 476
Period size: 62 Copynumber: 5.0 Consensus size: 62
29906508 ATCGTAAAAG
* * * *
29906518 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGTGAGAACCAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** *
29906580 TTTGATAAGTTCGGGTGTTCGTCCAAGAACCAAGAGAGACACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29906642 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGACACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29906704 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAG-T
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29906765 TTGGACAAGTTCGGAAGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29906827 ATTAATTAAC
Statistics
Matches: 231, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
61 58 0.25
62 173 0.75
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29907144 original size:216 final size:217
Alignment explanation
Indices: 29906761--29907202 Score: 583
Period size: 216 Copynumber: 2.0 Consensus size: 217
29906751 TCACGTAAAT
* *
29906761 AAGTTTGGACAAGTTCGGAAGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAACTAAGT
1 AAGTTTGGACAAGTTCGAAAGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGT
* * * *
29906826 TATTAATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTT
66 TATTAATTAACAGACCAAAACTTGCTTACAAAATGACAAACTATTTACACCAAATGATGGGATTT
* * * *
29906891 CTCGAGCATGGAATGTTTGGAAATTTGCTGAAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
131 CTCGAGCATGGAATGTTCGAAAATTTGCTGAAAGGAATGGATCATCTTGAATAATTTAAGGAACC
* *
29906956 TAAGTTATAAAAGA-ACTCGTGA
196 GAAGTTATAAAAGAGA-TCGTAA
* * *
29906978 AAGTTT-GACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGT
1 AAGTTTGGACAAGTTCGAAAGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGT
* *
29907042 TTTTAATTTAA-AGACCAAAACTTGCTTACAAAATGACAAACTATTTAGACCAAATGATGGGATT
66 TATTAA-TTAACAGACCAAAACTTGCTTACAAAATGACAAACTATTTACACCAAATGATGGGATT
* * * **
29907106 T-TCCGAGCGTGGAGTGTTCGAAAAATTT-CT-AGAAGGAATGGATTATCTTGAATAATTTTTGG
130 TCT-CGAGCATGGAATGTTCG-AAAATTTGCTGA-AAGGAATGGATCATCTTGAATAATTTAAGG
*
29907168 AATCGAAGTTATAAAAGAGATCGTAA
192 AACCGAAGTTATAAAAGAGATCGTAA
29907194 AAG-TTGGAC
1 AAGTTTGGAC
29907203 TTTCGTCCAA
Statistics
Matches: 196, Mismatches: 23, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
215 4 0.02
216 175 0.89
217 17 0.09
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (217 bp):
AAGTTTGGACAAGTTCGAAAGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGT
TATTAATTAACAGACCAAAACTTGCTTACAAAATGACAAACTATTTACACCAAATGATGGGATTT
CTCGAGCATGGAATGTTCGAAAATTTGCTGAAAGGAATGGATCATCTTGAATAATTTAAGGAACC
GAAGTTATAAAAGAGATCGTAA
Found at i:29907463 original size:268 final size:268
Alignment explanation
Indices: 29906981--29907466 Score: 665
Period size: 268 Copynumber: 1.8 Consensus size: 268
29906971 CTCGTGAAAG
** *
29906981 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
29907046 AATTTAAAGACCAAAACTTGCTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCCG
66 AATTTAAAGACCAAAACTTGCTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCCG
* * * * * **
29907111 AGCGTGGAGTGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAATTTTTGGAATCGAAG
131 AGCATGGAGTATTCGAAAAATTGCTAGAAGGAATGGATCATCTTAAATAATTTAAGGAATCGAAG
29907176 TTATAAAAGAGATCGTAAAAGTTGGACTTTCGTCCAAGAACCAAGACAGAAAACATTCTTACGTA
196 TTATAAAAGAGATCGTAAAAGTTGGACTTTCGTCCAAGAACCAAGACAGAAAACATTCTTACGTA
29907241 AATAAGTT
261 AATAAGTT
* * *
29907249 TTTGGCAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * * * *
29907314 ATTTTCCAGTCCAAAACTTGTTTACAAAATGATAAACTGTTTTGACCAAATGATGTGA-TTTCTC
66 AATTTAAAGACCAAAACTTGCTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTC-C
* * * * *
29907378 GAGCATGG-GATATTTGGAAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAA-CAG
130 GAGCATGGAG-TATTCGAAAAATTGCTAGAAGGAATGGATCATCTTAAATAATTTAAGGAATC-G
29907441 AAGTTATAAAAGA-ACTCGTAAAAGTT
193 AAGTTATAAAAGAGA-TCGTAAAAGTT
29907467 TCACATGTCC
Statistics
Matches: 187, Mismatches: 27, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
267 7 0.04
268 180 0.96
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (268 bp):
TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTTAAAGACCAAAACTTGCTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCCG
AGCATGGAGTATTCGAAAAATTGCTAGAAGGAATGGATCATCTTAAATAATTTAAGGAATCGAAG
TTATAAAAGAGATCGTAAAAGTTGGACTTTCGTCCAAGAACCAAGACAGAAAACATTCTTACGTA
AATAAGTT
Found at i:29907660 original size:214 final size:216
Alignment explanation
Indices: 29907249--29908389 Score: 1305
Period size: 214 Copynumber: 5.3 Consensus size: 216
29907239 TAAATAAGTT
* * *
29907249 TTTGGCAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * * *
29907314 ATTTTC-CAGTCCAAAACTTGTTTACAAAATGATAAACTGTTTTGACCAAATGATGTGATTTCTC
66 A-ATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* * * * *
29907378 GAGCATGGGATATTTGGAAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACAGAA
130 GAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
29907443 GTTATAAAAGAACTCGTAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * * * * * * * *
29907465 TTTCACATGTCCGAAAATTAGTCCAAGAACGAAGAGAGAAACAATTATTACGTAAATAAG-TTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
29907529 AATTCAAACACCAAAACTTGTTTACAAACTGACAAACTACTTAGACCAAATTATGCGA-TTCCCG
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* * * * * * * * * *
29907593 AGCATGGACTGCTCGAAAAATTGTTCGAACGAATAGATCGTCTTCAAAACTTTTAGGAACTGAAG
131 AGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * *
29907658 TTATAAAAGAAATGGCAAAAG
196 TTATAAAAGAACTCGTAAAAG
* * * *
29907679 TTTGACAAGTTCGGATGTTCGTCC-A-AACGTCAAGAGAGAAACAATTCTTACATAAATAAGGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAAC--CAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * * * * * * **
29907742 TTAATTCAAAAACCAAAACAT-TTCACGAAATGGCAAACTATTTAGGCCATACGGTGCGATTTTA
64 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * *
29907806 CGAGCATGGAATGTTCGAAAAATT-CTCGAAGTAATGGATCGTCTTGAATACTTTAAGGTACCGA
129 CGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
*
29907870 AGTTATAAAAGAACTAGTAAAAG
194 AGTTATAAAAGAACTCGTAAAAG
* * * *
29907893 TTTGAAAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACATTTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
29907958 AATTGAAAGACTAAATCCTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTCCCG
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* * * *
29908023 AGCATGGAAATCTTTGAAAAACTGCCCGAAGGAATGGATCGTCTTGAATACTTTTAAGGAATCGA
131 AGCATGG-AATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGA
* *
29908088 AGTTATAGAACAACTCGTAAAAG
194 AGTTATAAAAGAACTCGTAAAAG
* * * ** *
29908111 TTT-AAAATGTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGCTCTCACGCAAATAAGTTTT
1 TTTGACAA-GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
29908175 TTATTCAAAGACCAAAACATT-TTT-CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
65 TAATTCAAAGACCAAAAC-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * * *
29908238 CGAGCAAGGAATGTTTGGAAAATAGCTCGAAGGAATGGATCGCCATGAATACTTTCAGGAACCGA
129 CGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
*
29908303 AGTTATAAAA-AAATCGTAAAAG
194 AGTTATAAAAGAACTCGTAAAAG
* * *
29908325 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTGACATAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
29908390 GACAAGTTCG
Statistics
Matches: 766, Mismatches: 145, Indels: 30
0.81 0.15 0.03
Matches are distributed among these distances:
212 3 0.00
213 1 0.00
214 329 0.43
215 158 0.21
216 99 0.13
217 75 0.10
218 100 0.13
219 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (216 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
AGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
TTATAAAAGAACTCGTAAAAG
Found at i:29908251 original size:432 final size:428
Alignment explanation
Indices: 29907255--29908389 Score: 1291
Period size: 432 Copynumber: 2.6 Consensus size: 428
29907245 AGTTTTTGGC
* * *
29907255 AAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTTATTTTC
1 AAGTTCGGAAGTTCGT-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT-TATTC
* * * * * * *
29907320 -CAGTCCAAAAC-TTGTTTACAAAATGATAAACTGTTTTGACCAAATGATGTGATTTCTCGAGCA
64 AAAGACCAAAACATT-TTT-CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGAGCA
* * * *
29907383 TGGGATATTTGGAAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACAGAAGTTAT
127 TGGAATGTTTGGAAAATT-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* * * * *
29907448 AAAAGAACTCGTAAAAGTTTCACATG-TCCGAAAATT-AGTCCAAGAACGAAGAGAGAAACAATT
191 AAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCA-TCCAAGAACCAAGAGAGAAACAATT
* * * *
29907511 ATTACGTAAATAAG-TTTTAATTCAAACACCAAAACTTGTTTACAAACTGACAAACTACTTAGAC
254 CTCACGTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTACTTAGAC
* * * **
29907575 CAAATTATGCGATTCCCGAGCATGGACTGCTCGAAAAATTGTTCGAACGAATAGATCGTCTTCAA
319 CAAATGATGCGATTCCCGAGCATGGAATGCTCGAAAAACTGCCCGAACGAATAGATCGTCTTCAA
* * *
29907640 AACTTTTAGGAACTGAAGTTATAAAAGAAATGGCAAAAGTTTGAC
384 AACTTTTAGGAACTGAAGTTATAAAACAAATCGCAAAAGTTTGAA
* * * * * *
29907685 AAGTTCGGATGTTCGTCCA-AACGTCAAGAGAGAAACAATTCTTACATAAATAAGGTTTTAATTC
1 AAGTTCGGAAGTTCGTCAAGAAC--CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTATTC
* ** * * * * * * *
29907749 AAAAACCAAAACATTTCACGAAATGGCAAACTATTTAGGCCATACGGTGCGATTTTACGAGCATG
64 AAAGACCAAAACATTTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGAGCATG
* * * *
29907814 GAATGTTCGAAAAATTCTCGAAGTAATGGATCGTCTTGAATACTTTAAGGTACCGAAGTTATAAA
129 GAATGTTTGGAAAATTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
* * *
29907879 AGAACTAGTAAAAGTTTGAAAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACATTTCTCAC
194 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * * * *
29907944 GTAAATAAGTTTTTAATTGAAAGACTAAATCCTGTTTACAAAATGACAAACTATTTTGACCAAAT
259 GTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTACTTAGACCAAAT
* * * * *
29908009 GATGCGATTTCCCGAGCATGGAAAT-CTTTGAAAAACTGCCCGAAGGAATGGATCGTCTTGAATA
324 GATGCGA-TTCCCGAGCATGG-AATGC-TCGAAAAACTGCCCGAACGAATAGATCGTCTTCAAAA
* * *
29908073 CTTTTAAGGAA-TCGAAGTTATAGAACAACTCGTAAAAGTTT-AA
386 CTTTT-AGGAACT-GAAGTTATAAAACAAATCGCAAAAGTTTGAA
* ** *
29908116 AATGTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGCTCTCACGCAAATAAGTTTTTTATTC
1 AA-GTTCGGAAGTTCGTC-AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTATTC
* *
29908181 AAAGACCAAAACATTTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAAG
64 AAAGACCAAAACATTTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGAGCATG
* * * *
29908246 GAATGTTTGGAAAATAGCTCGAAGGAATGGATCGCCATGAATACTTTCAGGAACCGAAGTTATAA
129 GAATGTTTGGAAAAT-TCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * * *
29908311 AA-AAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTGA
193 AAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCA
*
29908375 CATAAATAAGTTTTT
258 CGTAAATAAGTTTTT
29908390 GACAAGTTCG
Statistics
Matches: 582, Mismatches: 107, Indels: 30
0.81 0.15 0.04
Matches are distributed among these distances:
428 106 0.18
429 109 0.19
430 68 0.12
431 42 0.07
432 208 0.36
433 46 0.08
434 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (428 bp):
AAGTTCGGAAGTTCGTCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTATTCAA
AGACCAAAACATTTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGAGCATGGA
ATGTTTGGAAAATTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTACTTAGACCAAATGA
TGCGATTCCCGAGCATGGAATGCTCGAAAAACTGCCCGAACGAATAGATCGTCTTCAAAACTTTT
AGGAACTGAAGTTATAAAACAAATCGCAAAAGTTTGAA
Found at i:29908422 original size:62 final size:62
Alignment explanation
Indices: 29908325--29908513 Score: 254
Period size: 62 Copynumber: 3.0 Consensus size: 62
29908315 ATCGTAAAAG
* * * *
29908325 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTGACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29908387 TTTGACAAGTTCGGAAGTTCATCCAAGAACTAAGAGAGAAAAAATAT-TCACGTGAATAAGTG
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAAT-TCTCACGTAAATAAGTT
** * *
29908449 TTTGACCTGTTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29908511 TTT
1 TTT
29908514 AATTCAGCGA
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
61 1 0.01
62 107 0.98
63 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29908762 original size:62 final size:62
Alignment explanation
Indices: 29908665--29908853 Score: 297
Period size: 62 Copynumber: 3.0 Consensus size: 62
29908655 ATCGTAAAAG
* * * * *
29908665 TTTGATAAGTTCGGATGTTCGTCCATGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29908727 TTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
29908789 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29908851 TTT
1 TTT
29908854 AAGTCAGCGA
Statistics
Matches: 115, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 115 1.00
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29909052 original size:339 final size:340
Alignment explanation
Indices: 29908119--29909532 Score: 2102
Period size: 339 Copynumber: 4.2 Consensus size: 340
29908109 AGTTTAAAAT
* * ** * * **
29908119 GTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGCTCTCACGCAAATAAGTTTTTTATTCAAA
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAGC
* *
29908184 GACCAAAACATT-TTT-CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAAGG
66 GACCAAAAC-TTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCAAGG
* * * * ** *
29908247 AATGTTTGGAAAATAGCTCGAAGGAATGGATCGCCATGAATACTTTCAGGAACCGAAGTTATAAA
130 AATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAA
*
29908312 A-AAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTGAC
195 AGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
* * * * *
29908376 ATAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCAAGAACTAAGAGAGAAAAAATATTCACGTG
260 ATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTA
* **
29908441 AATAAGTGTTTGACCT
325 AATAAGTTTTTGACAA
* * *
29908457 GTTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAGC
*
29908522 GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCAAGGA
66 GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCAAGGA
* *
29908587 ATGTTCGAAAAATTGCTCAATGGAATGGATCATCTTGAATACTTTCAGGAACTGAAGTTATAAAA
131 ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
* *
29908652 GAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCATGAACCAAGAGAGAAACAATTCTTACA
196 GAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
* *
29908717 TAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGA
261 TAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAA
29908782 ATAAGTTTTTGACAA
326 ATAAGTTTTTGACAA
* *
29908797 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAGTCAGC
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAGC
* * * * * *
29908862 GACCAAAACTTGTTTAC-ATAAGACAAACTATTTAGACCAAATTATACGCTTTCTCAAGCATGGA
66 GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCAAGGA
* ** *
29908926 ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACCTTCAGGAATTGAATTTATAAAA
131 ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
*
29908991 GAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
196 GAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
* * *
29909056 TAAATAAGTTTTTGACAAGTTCGGAAGTTCGCCCAAGAACCAAGAGAGAAACTATAATCACGTAA
261 TAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAA
29909121 ATAAGTTTTTGACAA
326 ATAAGTTTTTGACAA
** * * * *
29909136 GTTCAAAACTTTGTCCAAGAACCAAGAGAGAATCAATTCTCACGTAAAGAAGTTTTTTAATTCAA
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTTAATTC-A
*
29909201 G-GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATG
64 GCGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCAAG
* *
29909265 GAATATTCGAATAATTGCTCGAAA-GAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATA
129 GAATGTTCGAAAAATTGCTC-AAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATA
* * *
29909329 AATGGAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGTGAGAAACAATTCTT
193 AAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
* * ** * *
29909394 ACGTAAATAAGTTTTTGACAAGTTTGGGTGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACG
258 ACATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACG
29909459 TAAATAAGTTTTTGACAA
323 TAAATAAGTTTTTGACAA
* *
29909477 GTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTT
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
29909533 GGACAAGTTC
Statistics
Matches: 980, Mismatches: 89, Indels: 12
0.91 0.08 0.01
Matches are distributed among these distances:
337 2 0.00
338 66 0.07
339 390 0.40
340 244 0.25
341 275 0.28
342 3 0.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (340 bp):
GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAGC
GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCAAGGA
ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
GAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
TAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAA
ATAAGTTTTTGACAA
Found at i:29909101 original size:62 final size:62
Alignment explanation
Indices: 29909004--29909192 Score: 252
Period size: 62 Copynumber: 3.0 Consensus size: 62
29908994 ATCGTAAAAG
* * * *
29909004 TTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * **
29909066 TTTGACAAGTTCGGAAGTTCGCCCAAGAACCAAGAGAGAAACTATAATCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * * * *
29909128 TTTGACAAGTTCAAAACTTTGTCCAAGAACCAAGAGAGAATCAATTCTCACGTAAAGAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29909190 TTT
1 TTT
29909193 TAATTCAAGG
Statistics
Matches: 109, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 109 1.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29909417 original size:680 final size:678
Alignment explanation
Indices: 29908119--29909532 Score: 2143
Period size: 680 Copynumber: 2.1 Consensus size: 678
29908109 AGTTTAAAAT
* * ** * * *
29908119 GTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGCTCTCACGCAAATAAGTTTTTTATTCAAA
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAGTCAAA
* *
29908184 GACCAAAACATTTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAAGGAA
66 GACCAAAACATTTTTCAAAATGACAAACTATTTAGACCAAATGATACGATTTCCCAAGCAAGGAA
* * * * *
29908249 TGTTTGGAAAATAGCTCGAAGGAATGGATCGCCATGAATACTTTCAGGAACCGAAGTTATAAAAA
131 TGTTCGAAAAATAGCTCAAAGGAATGGATCACCATGAATACCTTCAGGAACCGAAGTTATAAAAA
29908314 AATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTGACATA
196 AATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTGACATA
* * * *
29908379 AATAAGTTTTTGACAAGTTCGGAAGTTCATCCAAGAACTAAGAGAGAAAAAATATTCACGTGAAT
261 AATAAGTTTTTGACAAGTTCGGAAGTTCACCCAAGAACCAAGAGAGAAAAAATAATCACGTAAAT
** * * *
29908444 AAGTGTTTGACCTGTTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAG
326 AAGTGTTTGACAAGTTCAAAACTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAAGAAG
29908509 TTTTTAATTCAGCGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATT
391 TTTTTAATTCAGCGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATT
* * *
29908574 TCTCGAGCAAGGAATGTTCGAAAAATTGCTCAATGGAATGGATCATCTTGAATACTTTCAGGAAC
456 TCCCGAGCAAGGAATATTCGAAAAATTGCTCAATAGAATGGATCATCTTGAATACTTTCAGGAAC
* * *
29908639 TGAAGTTATAAAAGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCATGAACCAAGAGAGA
521 CGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGA
*
29908704 AACAATTCTTACATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAAC
586 AACAATTCTTACATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAC
*
29908769 AATACTCACGTGAATAAGTTTTTGACAA
651 AATACTCACGTAAATAAGTTTTTGACAA
* **
29908797 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAGTCAGC
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAGTCAAA
* * * * *
29908862 GACCAAAAC-TTGTTTACATAA-GACAAACTATTTAGACCAAATTATACGCTTTCTCAAGCATGG
66 GACCAAAACATT-TTT-CAAAATGACAAACTATTTAGACCAAATGATACGATTTCCCAAGCAAGG
* * * ** *
29908925 AATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACCTTCAGGAATTGAATTTATAAA
129 AATGTTCGAAAAATAGCTCAAAGGAATGGATCACCATGAATACCTTCAGGAACCGAAGTTATAAA
* *
29908990 AGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
194 A-AAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTGAC
* **
29909055 ATAAATAAGTTTTTGACAAGTTCGGAAGTTCGCCCAAGAACCAAGAGAGAAACTATAATCACGTA
258 ATAAATAAGTTTTTGACAAGTTCGGAAGTTCACCCAAGAACCAAGAGAGAAAAAATAATCACGTA
* ** *
29909120 AATAAGTTTTTGACAAGTTCAAAACTTTGTCCAAGAACCAAGAGAGAATCAATTCTCACGTAAAG
323 AATAAGTGTTTGACAAGTTCAAAACTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAAG
29909185 AAGTTTTTTAATTCAAG-GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATG
388 AAG-TTTTTAATTC-AGCGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATG
* *
29909249 CGATTTCCCGAGCATGGAATATTCGAATAATTGCTCGAA-AGAATGGATCATCTTGAATACTTTC
451 CGATTTCCCGAGCAAGGAATATTCGAAAAATTGCTC-AATAGAATGGATCATCTTGAATACTTTC
* *
29909313 AGGAACCGAAGTTATAAATGGAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAA
515 AGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAA
* * * **
29909378 GTGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGGTGTTCGTCCAAGAACCAAGAG
580 GAGAGAAACAATTCTTACATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG
* *
29909443 AGAAAGAATTCTCACGTAAATAAGTTTTTGACAA
645 AGAAACAATACTCACGTAAATAAGTTTTTGACAA
* *
29909477 GTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTT
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
29909533 GGACAAGTTC
Statistics
Matches: 662, Mismatches: 68, Indels: 10
0.89 0.09 0.01
Matches are distributed among these distances:
677 2 0.00
678 158 0.24
679 182 0.27
680 316 0.48
681 4 0.01
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (678 bp):
GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAGTCAAA
GACCAAAACATTTTTCAAAATGACAAACTATTTAGACCAAATGATACGATTTCCCAAGCAAGGAA
TGTTCGAAAAATAGCTCAAAGGAATGGATCACCATGAATACCTTCAGGAACCGAAGTTATAAAAA
AATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTGACATA
AATAAGTTTTTGACAAGTTCGGAAGTTCACCCAAGAACCAAGAGAGAAAAAATAATCACGTAAAT
AAGTGTTTGACAAGTTCAAAACTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAAGAAG
TTTTTAATTCAGCGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATT
TCCCGAGCAAGGAATATTCGAAAAATTGCTCAATAGAATGGATCATCTTGAATACTTTCAGGAAC
CGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGA
AACAATTCTTACATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAC
AATACTCACGTAAATAAGTTTTTGACAA
Found at i:29909446 original size:62 final size:62
Alignment explanation
Indices: 29909345--29909592 Score: 379
Period size: 62 Copynumber: 4.0 Consensus size: 62
29909335 ATCGTAAAAG
* * *
29909345 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGTGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** *
29909407 TTTGACAAGTTTGGGTGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29909469 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29909531 TTGGACAAGTTCAGAAGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29909593 ATTAATTAAC
Statistics
Matches: 171, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 171 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29909802 original size:402 final size:403
Alignment explanation
Indices: 29909004--29909811 Score: 1140
Period size: 402 Copynumber: 2.0 Consensus size: 403
29908994 ATCGTAAAAG
* *
29909004 TTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* * *
29909069 GACAAGTTCGGAAGTTCGCCCAAGAACCAAGAGAGAAACTATAATCACGTAAATAAGTTTTTGAC
66 GACAAGTTCGGAAGTTCGCCCAAGAACCAAGAGAGAAACAATAATCACATAAATAAGTTTTGGAC
* * * *
29909134 AAGTTCAAAACTTTGTCCAAGAACCAAGAGAGAATCAATTCTCACGTAAAGAAGTTTTTTAATTC
131 AAGTTCAAAACTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAAAGAAGTTTATTAATTC
* * * *
29909199 AAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCAT
196 AAAGACCAAAACTTGTTTACAAAAAGACAAACTATTTACACCAAATGATGCGATTTCCCAAGCAT
*
29909264 GGAATATTCGAATAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATA
261 GGAATATTCGAATAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATA
* * * * *
29909329 AATGGAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGTGAGAAACAATTCTT
326 AATAGAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
29909394 ACGTAAATAAGTT
391 ACGTAAATAAGTT
* * * *
29909407 TTTGACAAGTTTGGGTGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* * **
29909472 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTGGAC
66 GACAAGTTCGGAAGTTCGCCCAAGAACCAAGAGAGAAACAATAATCACATAAATAAGTTTTGGAC
* * **
29909537 AAGTTCAGAAGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAACTAAG-TTATTAATT-
131 AAGTTCAAAACTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAAAGAAGTTTATTAATTC
* * * * *
29909600 AACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCAAGCA
196 AA-AGACCAAAACTTGTTTACAAAAAGACAAACTATTTACACCAAATGATGCGATTTCCCAAGCA
* * * * *
29909665 TGGAATGTTTGGAA-ATTTGCT-GAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTT
260 TGGAAT-ATTCGAATAATTGCTCGAAA-GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTT
* * **
29909728 ATAAA-AGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAGTAAT
323 ATAAATAGAA-TCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
29909792 TCTCACGTAAATAAGTT
387 TCTCACGTAAATAAGTT
29909809 TTT
1 TTT
29909812 AATTTAAAGA
Statistics
Matches: 356, Mismatches: 45, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
401 9 0.03
402 178 0.50
403 169 0.47
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (403 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
GACAAGTTCGGAAGTTCGCCCAAGAACCAAGAGAGAAACAATAATCACATAAATAAGTTTTGGAC
AAGTTCAAAACTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAAAGAAGTTTATTAATTC
AAAGACCAAAACTTGTTTACAAAAAGACAAACTATTTACACCAAATGATGCGATTTCCCAAGCAT
GGAATATTCGAATAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATA
AATAGAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
ACGTAAATAAGTT
Found at i:29910020 original size:215 final size:215
Alignment explanation
Indices: 29909531--29910028 Score: 580
Period size: 216 Copynumber: 2.3 Consensus size: 215
29909521 TAAATAAGTT
* * *
29909531 TTGGACAAGTTCAGAAGTTCGTCCAAGAACCAA-AAGAGAAACAATTCTCACGTAACTAAGTTAT
1 TTGGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAAGA-AAAC-ATTCTCACGTAAATAAGTTTT
* * * *
29909595 TAATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTC
64 TAATTAACAGACCAAAACTTGCTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTCTC
* * * * * * **
29909660 AAGCATGGAATGTTTGGAAATTTGCTGAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAA
129 AAGCATGGAATGTTCGAAAAATTGCTGAAAGGAATGGATCATCTTGAACAATTTAAGGAACAGAA
29909725 GTTATAAAAGAACTCGTGAAAG
194 GTTATAAAAGAACTCGTGAAAG
* * * *
29909747 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAGTA-ATTCTCACGTAAATAAGTTTT
1 TTGGACAAGTTCGGAAGTTCGTCCAAGAACCAAGA-AGAA-AACATTCTCACGTAAATAAGTTTT
*
29909811 TAATTTAA-AGACCAAAACTTGCTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT-T
64 TAA-TTAACAGACCAAAACTTGCTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTCT
* * * * * **
29909874 CCGAGCGTGGAGTGTTCGAAAAATT-CT-AGAAGGAATGGATTATCTTGTACAATTTTTGGAACA
128 -CAAGCATGGAATGTTCGAAAAATTGCTGA-AAGGAATGGATCATCTTGAACAATTTAAGGAACA
29909937 GAAGTTATAAAAGAGA-TCGT-AAACG
191 GAAGTTATAAAAGA-ACTCGTGAAA-G
* * *
29909962 TTGGACAAGTTCGGATGTTCGTCCAAGAACCAAGATAGAAAACATTCTTACATAAATAAGTTTTT
1 TTGGACAAGTTCGGAAGTTCGTCCAAGAACCAAGA-AGAAAACATTCTCACGTAAATAAGTTTTT
29910027 AA
65 AA
29910029 CAAGTTCGGA
Statistics
Matches: 238, Mismatches: 35, Indels: 19
0.82 0.12 0.07
Matches are distributed among these distances:
214 5 0.02
215 104 0.44
216 119 0.50
217 6 0.03
218 4 0.02
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (215 bp):
TTGGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAAGAAAACATTCTCACGTAAATAAGTTTTTA
ATTAACAGACCAAAACTTGCTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTCTCAA
GCATGGAATGTTCGAAAAATTGCTGAAAGGAATGGATCATCTTGAACAATTTAAGGAACAGAAGT
TATAAAAGAACTCGTGAAAG
Found at i:29910064 original size:62 final size:62
Alignment explanation
Indices: 29909966--29910089 Score: 169
Period size: 62 Copynumber: 2.0 Consensus size: 62
29909956 TAAACGTTGG
* * * *
29909966 ACAAGTTCGGATGTTCGTCCAAGAACCAAGATAGAAA-ACATTCTTACATAAATAAGTTTTTA
1 ACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACA-ATTCTCACATAAATAAGTTTTTA
* * *
29910028 ACAAGTTCGGAAGTTCATCCAAGAACCACGAGAGAAACAATTCTCACGTAACTAAGTTTTTA
1 ACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA
29910090 TTTTACAGTC
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
62 53 0.98
63 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (62 bp):
ACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA
Found at i:29910443 original size:216 final size:216
Alignment explanation
Indices: 29910030--29911161 Score: 1129
Period size: 216 Copynumber: 5.3 Consensus size: 216
29910020 AGTTTTTAAC
* * * * * *
29910030 AAGTTCGGAAGTTCATCCAAGAACCACGAGAGAAACAATTCTCACGTAACTAAGTTTTTATTTTA
1 AAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * * * **
29910095 CAGTCCAAAACTTGTTTACAAAATGATAAACTGTTTTGACCAAATGATGTGATTTTTCGAGCATG
66 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * * * * *
29910160 GGATATTTGGAAAATTTCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACAGAAGTTATAA
131 GAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* *
29910225 AAGAACTCGTAAAAGTTTCAC
196 AAGAACTCGTAAAAGTTTGAA
* * * * * * * *
29910246 ATGTCCGGAAATTAGTCCAAGAACGAAGAGAGAAACAATTCTTACGTAAATAAGTTTTAAATTCA
1 AAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * * * *
29910311 AACACCAGAACTTGTTTACCAACTGACAAACTACTTAGACCAAATTATGCGATTTCCTGAGCATG
66 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * ** * * *
29910376 GACTGTTCGAAAAATTGCTCGAAGGAACAGATCGTCTTGTAA-AGTTTTAGGAACCGAAGTAATA
131 GAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTG-AATACTTTAAGGAACCGAAGTTATA
* * * *
29910440 AAAGAAATGGCAAAAGTTTGAC
195 AAAGAACTCGTAAAAGTTTGAA
* * * *
29910462 AAGTTCAGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGCAAATAAGTTTTTAATTCA
1 AAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * * * ** *
29910527 AAAACCAAAACAT-TTCACGAAATGGCAAACTATTTAGGCCATACA-G-TGCGATTTTACGAGTA
66 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA-A-ATGATGCGATTTCCCGAGCA
* * * * *
29910589 TGGAATGTTCGAAAAATT-CTCGAAGCAATAGATCGTCTTAAATACTTTAAGGTACCGAAGTTAT
129 TGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
*
29910653 AAAAGAACTAGTAAAAGTTTGAA
194 AAAAGAACTCGTAAAAGTTTGAA
* * * *
29910676 AACTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATTAGTTTTTAATTGA
1 AAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * *
29910741 AAGACCAAATCCTGTTTAC--AA--ACAAACTATTTAGACCAAACGACGCGATTTCCCGAGCACG
66 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * * * * *
29910802 GAAATCTTTGAAAAACTGCCCGCAGGAATGGATTGTCTTGAATACTTTAAGGAATCGAAGTTATA
131 G-AATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
* *
29910867 GAACAACTCGTAAAAGTTT-AA
195 AAAGAACTCGTAAAAGTTTGAA
** * * * *
29910888 AATGTTC-GAAAGTTCGTGTAAGAACAAAGAGAGAAATAGTTGTCACGTAAATAAGTTTTTAATT
1 AA-GTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * * *
29910952 CAAAGACCACAACATT-TTT-CAAAATTACAAACTATTTAGACCAAATGATTCAAATTCCCGAGC
64 CAAAGACCAAAAC-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
* * * * * *
29911015 AAGGAATGTTTGGAAAATAGCTCGAAGGAATGGATCGCCATGAATACTTTCAGGAACCGAAGTTA
128 ATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
* * *
29911080 TAAAAAAAATCGTAAAAGTTTGAT
193 TAAAAGAACTCGTAAAAGTTTGAA
* * * * *
29911104 AAGTTCAGATGTTCGTCCAAGAACGAAGAGAGAAAAAATTCTTACATAAATAAGTTTT
1 AAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
29911162 GACAAGTTCG
Statistics
Matches: 742, Mismatches: 156, Indels: 37
0.79 0.17 0.04
Matches are distributed among these distances:
209 1 0.00
210 2 0.00
211 29 0.04
212 18 0.02
213 122 0.16
214 125 0.17
215 168 0.23
216 274 0.37
217 3 0.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (216 bp):
AAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
GAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
AAGAACTCGTAAAAGTTTGAA
Found at i:29911249 original size:62 final size:62
Alignment explanation
Indices: 29911098--29911285 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
29911088 ATCGTAAAAG
* * * * * * *
29911098 TTTGATAAGTTCAGATGTTCGTCCAAGAACGAAGAGAGAAAAAATTCTTACATAAATAAG-T
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29911159 TTTGACAAGTTCGGAAATTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
29911221 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29911283 TTT
1 TTT
29911286 AATTCACCGA
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
61 50 0.45
62 61 0.55
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29911533 original size:62 final size:61
Alignment explanation
Indices: 29911436--29911624 Score: 245
Period size: 62 Copynumber: 3.0 Consensus size: 61
29911426 ATCGTAAAAG
* * *
29911436 TTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGACACAATTCTTACATAAATATGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA-ACAATTCTCACATAAATATGTT
* * *
29911498 TTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACATGAAT-TAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACATAAATAT-GTT
* * * *
29911560 TTTGACAAGTACGAAAGTTCGTCCAAGAACCAAGAGAGAATCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA-CAATTCTCACATAAATATGTT
29911622 TTT
1 TTT
29911625 AATTCAGCGA
Statistics
Matches: 110, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
61 3 0.03
62 106 0.96
63 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (61 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACATAAATATGTT
Found at i:29911871 original size:62 final size:62
Alignment explanation
Indices: 29911774--29911962 Score: 279
Period size: 62 Copynumber: 3.0 Consensus size: 62
29911764 ATCGTAAAAG
* * * * *
29911774 TTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29911836 TTTGACAAGTTCGAAAGTTCATCCAAGAACTAAGAGAGAAACAATACTCACGTGAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29911898 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29911960 TTT
1 TTT
29911963 AATTTAGCGA
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29912191 original size:677 final size:678
Alignment explanation
Indices: 29910891--29913321 Score: 3707
Period size: 677 Copynumber: 3.6 Consensus size: 678
29910881 AGTTTAAAAT
** * ** * * **
29910891 GTTCGAAAGTTCGTGTAAGAACAAAGAGAGAAATAGTTGTCACGTAAATAAGTTTTTAATTCAAA
1 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
* ** * * * * *
29910956 GACCACAACATT-TTT-CAAAATTACAAACTATTTAGACCAAATGATTCAAATTCCCGAGCAAGG
66 GACCAAAAC-TTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCAATTTCTCGAGCATGG
* * * * ** *
29911019 AATGTTTGGAAAATAGCTCGAAGGAATGGATCGCCATGAATACTTTCAGGAACCGAAGTTATAAA
130 AATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAA
* * *
29911084 AAAAATCGTAAAAGTTTGATAAGTTCAGATGTTCGTCCAAGAACGAAGAGAGAAAAAATTCTTAC
195 AGAAATCGTAAAAGTTTGATAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
29911149 ATAAATAAG-TTTTGACAAGTTCGGAAA-TTCGTCCAAGAACTAAGAGAGAAACAATACTCACGT
260 ATAAATAAGTTTTTGACAAGTTC-GAAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGT
29911212 GAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAA
324 GAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAA
* *
29911277 TAAGTTTTTAATTCACCGACCAAAACTTGTTTACAAAAGACAAACTATTTAGACTAAATTATGTG
389 TAAGTTTTTAATTCAGCGACCAAAACTTGTTTACAAAAGACAAACTATTTAGACCAAATTATGTG
*
29911342 ATTTCTCGAGCATGGAATGTTCGAAAAATTGCTAAAAGGAATGGATCATCTTGAATACTTTCAGG
454 ATTTCTCGAGCATGGAATGTTCG-AAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGG
29911407 AACCGAAGTTATAAAAGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAG
518 AACCGAAGTTATAAAAGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAG
* *
29911472 AGACACAATTCTTACATAAATATGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGA
583 AGAAACAATTCTTACATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGA
*
29911537 AACAATACTCACATGAATTAGTTTTTGACAA
648 AACAATACTCACATGAATAAGTTTTTGACAA
* *
29911568 GTACGAAAGTTCGTCCAAGAACCAAGAGAGAATCAATTCTCACGTAAATAAGTTTTTAATTCAGC
1 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
* * *
29911633 GATCAAAACTTGTTTACAAAAAGATAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGA
66 GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCAATTTCTCGAGCATGGA
* *
29911698 ATGTTCGAAACATTGCTCAAAGGAATGGATCATCTTGAATAATTTCAGGAA-CGAAGTTATAAAA
131 ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
*
29911762 -AAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
196 GAAATCGTAAAAGTTTGATAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
*
29911826 TAAATAAGTTTTTGACAAGTTCGAAAGTTCATCCAAGAACTAAGAGAGAAACAATACTCACGTGA
261 TAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGA
* *
29911891 ATAAGTTTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATA
326 ATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATA
*
29911956 AGTTTTTAATTTAGCGACCAAAACTTGTTTACAAACAGACAAACTATTTAGACCAAATTATGTGA
391 AGTTTTTAATTCAGCGACCAAAACTTGTTTACAAA-AGACAAACTATTTAGACCAAATTATGTGA
* * *
29912021 TTTCTCGAGCATGGATTGTTTGAAAATTGCTCAATGGAATGGATCATCTTGAATACTTTCAGGAA
455 TTTCTCGAGCATGGAATGTTCGAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAA
* * *
29912086 CTGAAGTTATAAAAGAAATCGTAAAAGTTTGATAAGCTCGGATGTTCGTCCATGAACCAAGAGAG
520 CCGAAGTTATAAAAGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAG
*
29912151 AAACAATTCTTACATAAATAAGTTTTTGACAAGATCGGAAGTTCGTCCAAGAACTAAGAGAGAAA
585 AAACAATTCTTACATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAA
*
29912216 CAATACTCACCTGAATAAGTTTTTGACAA
650 CAATACTCACATGAATAAGTTTTTGACAA
* *
29912245 GTTCGGAAGTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
1 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
* * * *
29912310 GACAAAAATTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCTTGGA
66 GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCAATTTCTCGAGCATGGA
* * * *
29912375 ATGTTCGAAAAATTGCTCAATGGAATGGGTCATCTTCAATACTTTCAGGAACCAAAGTTATAAAA
131 ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
*
29912440 GAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
196 GAAATCGTAAAAGTTTGATAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
* * * *
29912505 TAAATAAGTTTTTGTCAGGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTCA
261 TAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGA
* *
29912570 ATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGATA-CAAG-GTTGAACCATTTCTCACGTAAA
326 ATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGA-ACCAAGAG-AGAACCAATTCTCACGTAAA
* *
29912633 TAAGTTTTTAAGTCAGCGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGC
389 TAAGTTTTTAATTCAGCGACCAAAACTTGTTTAC-AAAAGACAAACTATTTAGACCAAATTATGT
* * *
29912698 GATTTCTCGAGCATGGAATGTTCGAAACAATGCTCAAAGTAATGGATCATCTTGAATACCTTCAG
453 GATTTCTCGAGCATGGAATGTTCGAAA-ATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAG
* * *
29912763 GAACCGAAGTTATAAAAGAAATCATAAAAGTTTGATAAGTTCGGATGTACGTCCAAGAACAAAGA
517 GAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGA
* * *
29912828 GAGAAACAATTCTTACAAAAATAAGTTTTTGACAAGTTCGGAAGTTCG-CTCAAAAACCAAGAGA
582 GAGAAACAATTCTTACATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTC-CAAGAACTAAGAGA
* * *
29912892 AAAACAATACTCACGTCAATAAGTTTTTGACAA
646 GAAACAATACTCACATGAATAAGTTTTTGACAA
*
29912925 GTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTTAATTCAA
1 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAG-TTTTTAATTC-A
* *
29912990 G-GACCAAAACTTGTTTACAAAAAGATAAACTGTTTAGACCAAATTATGCAATTTC-CAGAGCAT
64 GCGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCAATTTCTC-GAGCAT
* * * *
29913053 GGAATATTTGAAAAATTTCTCGAAA-GAATGGATCATCTTGAATACTTTCAGGAACTGAAGTTAT
128 GGAATGTTCGAAAAATTGCTC-AAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
* * * *
29913117 AAAAGAAATCGTAAAAGTTTGAGAAGTTCAGATGTTCGTCCAAGAACTACGTGAGAAACAATTCT
192 AAAAGAAATCGTAAAAGTTTGATAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * *** * * *
29913182 CACGTAAATAAGTTTTTGACAAGTTCGGGTGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCAC
257 TACATAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCAC
* * *
29913247 GTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
322 GTGAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTA
29913312 AATAAGTTTT
387 AATAAGTTTT
29913322 GGACAAGTTC
Statistics
Matches: 1603, Mismatches: 133, Indels: 32
0.91 0.08 0.02
Matches are distributed among these distances:
676 75 0.05
677 583 0.36
678 143 0.09
679 263 0.16
680 235 0.15
681 299 0.19
682 5 0.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (678 bp):
GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCAATTTCTCGAGCATGGA
ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
GAAATCGTAAAAGTTTGATAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
TAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGA
ATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATA
AGTTTTTAATTCAGCGACCAAAACTTGTTTACAAAAGACAAACTATTTAGACCAAATTATGTGAT
TTCTCGAGCATGGAATGTTCGAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAAC
CGAAGTTATAAAAGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGA
AACAATTCTTACATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAAC
AATACTCACATGAATAAGTTTTTGACAA
Found at i:29912210 original size:62 final size:62
Alignment explanation
Indices: 29912113--29912301 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
29912103 ATCGTAAAAG
* * * * *
29912113 TTTGATAAGCTCGGATGTTCGTCCATGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
* * * *
29912175 TTTGACAAGATCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACCTGAATAAGTT
1 TTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
* * * *
29912237 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
29912299 TTT
1 TTT
29912302 AATTCAGCGA
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.26
Consensus pattern (62 bp):
TTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
Found at i:29912542 original size:340 final size:340
Alignment explanation
Indices: 29910891--29913321 Score: 3702
Period size: 340 Copynumber: 7.2 Consensus size: 340
29910881 AGTTTAAAAT
* ** * ** * * **
29910891 GTTCGAAAGTTCGTGTAAGAACAAAGAGAGAAATAGTTGTCACGTAAATAAGTTTTTAATTCAAA
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
* ** * * * * * *
29910956 GACCACAACATT-TTT-CAAAATTACAAACTATTTAGACCAAATGATTCAAATTCCCGAGCAAGG
66 GACCAAAAC-TTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGG
* * * * ** *
29911019 AATGTTTGGAAAATAGCTCGAAGGAATGGATCGCCATGAATACTTTCAGGAACCGAAGTTATAAA
130 AATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAA
* * * *
29911084 AAAAATCGTAAAAGTTTGATAAGTTCAGATGTTCGTCCAAGAACGAAGAGAGAAAAAATTCTTAC
195 AGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
*
29911149 ATAAATAAG-TTTTGACAAGTTCGGAAATTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTG
260 ATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTG
29911213 AATAAGTTTTTGACAA
325 AATAAGTTTTTGACAA
*
29911229 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCACC
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
* *
29911294 GACCAAAACTTGTTTAC-AAAAGACAAACTATTTAGACTAAATTATGTGATTTCTCGAGCATGGA
66 GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGA
*
29911358 ATGTTCGAAAAATTGCTAAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
131 ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
*
29911423 GAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGACACAATTCTTACA
196 GAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
* *
29911488 TAAATATGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACATGA
261 TAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGA
*
29911553 ATTAGTTTTTGACAA
326 ATAAGTTTTTGACAA
* * *
29911568 GTACGAAAGTTCGTCCAAGAACCAAGAGAGAATCAATTCTCACGTAAATAAGTTTTTAATTCAGC
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
* *
29911633 GATCAAAACTTGTTTACAAAAAGATAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGA
66 GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGA
* *
29911698 ATGTTCGAAACATTGCTCAAAGGAATGGATCATCTTGAATAATTTCAGGAA-CGAAGTTATAAAA
131 ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
29911762 -AAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
196 GAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
* *
29911826 TAAATAAGTTTTTGACAAGTTCGAAAGTTCATCCAAGAACTAAGAGAGAAACAATACTCACGTGA
261 TAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGA
29911891 ATAAGTTTTTGACAA
326 ATAAGTTTTTGACAA
* * *
29911906 GTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTTAGC
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
* *
29911971 GACCAAAACTTGTTTACAAACAGACAAACTATTTAGACCAAATTATGTGATTTCTCGAGCATGGA
66 GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGA
* * * *
29912036 TTGTTTG-AAAATTGCTCAATGGAATGGATCATCTTGAATACTTTCAGGAACTGAAGTTATAAAA
131 ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
* *
29912100 GAAATCGTAAAAGTTTGATAAGCTCGGATGTTCGTCCATGAACCAAGAGAGAAACAATTCTTACA
196 GAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
* *
29912165 TAAATAAGTTTTTGACAAGATCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACCTGA
261 TAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGA
29912230 ATAAGTTTTTGACAA
326 ATAAGTTTTTGACAA
*
29912245 GTTCGGAAGTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
* * *
29912310 GACAAAAATTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCTTGGA
66 GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGA
* * * *
29912375 ATGTTCGAAAAATTGCTCAATGGAATGGGTCATCTTCAATACTTTCAGGAACCAAAGTTATAAAA
131 ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
29912440 GAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
196 GAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
* * *
29912505 TAAATAAGTTTTTGTCAGGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTCA
261 TAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGA
29912570 ATAAGTTTTTGACAA
326 ATAAGTTTTTGACAA
* * *
29912585 GTTCGGAAGTTCGTCCAAGATA-CAAG-GTTGAACCATTTCTCACGTAAATAAGTTTTTAAGTCA
1 GTTCGGAAGTTCGTCCAAGA-ACCAAGAG-AGAACCAATTCTCACGTAAATAAGTTTTTAATTCA
29912648 GCGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATG
64 GCGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATG
* *
29912713 GAATGTTCGAAACAA-TGCTCAAAGTAATGGATCATCTTGAATACCTTCAGGAACCGAAGTTATA
129 GAATGTTCGAAA-AATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATA
* * *
29912777 AAAGAAATCATAAAAGTTTGATAAGTTCGGATGTACGTCCAAGAACAAAGAGAGAAACAATTCTT
193 AAAGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
* * * *
29912842 ACAAAAATAAGTTTTTGACAAGTTCGGAAGTTCG-CTCAAAAACCAAGAGAAAAACAATACTCAC
258 ACATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTC-CAAGAACTAAGAGAGAAACAATACTCAC
*
29912906 GTCAATAAGTTTTTGACAA
322 GTGAATAAGTTTTTGACAA
* *
29912925 GTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTTAATTCAA
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAG-TTTTTAATTC-A
* * *
29912990 G-GACCAAAACTTGTTTACAAAAAGATAAACTGTTTAGACCAAATTATGCAATTTC-CAGAGCAT
64 GCGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTC-GAGCAT
* * * *
29913053 GGAATATTTGAAAAATTTCTCGAAA-GAATGGATCATCTTGAATACTTTCAGGAACTGAAGTTAT
128 GGAATGTTCGAAAAATTGCTC-AAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
* * * * *
29913117 AAAAGAAATCGTAAAAGTTTGAGAAGTTCAGATGTTCGTCCAAGAACTACGTGAGAAACAATTCT
192 AAAAGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * ** * * *
29913182 CACGTAAATAAGTTTTTGACAAGTTCGGGTGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCAC
257 TACATAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCAC
*
29913247 GTAAATAAGTTTTTGACAA
322 GTGAATAAGTTTTTGACAA
* *
29913266 GTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTT
29913322 GGACAAGTTC
Statistics
Matches: 1920, Mismatches: 154, Indels: 36
0.91 0.07 0.02
Matches are distributed among these distances:
337 42 0.02
338 504 0.26
339 426 0.22
340 643 0.33
341 299 0.16
342 6 0.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (340 bp):
GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGA
ATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAA
GAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
TAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTGA
ATAAGTTTTTGACAA
Found at i:29912627 original size:62 final size:61
Alignment explanation
Indices: 29912453--29912641 Score: 236
Period size: 62 Copynumber: 3.0 Consensus size: 61
29912443 ATCGTAAAAG
* * * *
29912453 TTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29912515 TTTGTCAGGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTCAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29912577 TTTGACAAGTTCGGAAGTTCGTCCAAGATACAAG-GTTGAACCATTTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGA-ACAAGAG-AGAAACAATTCTCACGTAAATAAGTT
29912639 TTT
1 TTT
29912642 AAGTCAGCGA
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
61 2 0.02
62 105 0.96
63 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (61 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29912890 original size:62 final size:62
Alignment explanation
Indices: 29912793--29912981 Score: 236
Period size: 62 Copynumber: 3.0 Consensus size: 62
29912783 ATCATAAAAG
* * * * * **
29912793 TTTGATAAGTTCGGATGTACGTCCAAGAACAAAGAGAGAAACAATTCTTACAAAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29912855 TTTGACAAGTTCGGAAGTTCG-CTCAAAAACCAAGAGAAAAACAATACTCACGTCAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29912917 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29912979 TTT
1 TTT
29912982 TAATTCAAGG
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
61 1 0.01
62 105 0.98
63 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29913235 original size:62 final size:62
Alignment explanation
Indices: 29913134--29913372 Score: 343
Period size: 62 Copynumber: 3.9 Consensus size: 62
29913124 ATCGTAAAAG
* * * * * *
29913134 TTTGAGAAGTTCAGATGTTCGTCCAAGAACTACGTGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** *
29913196 TTTGACAAGTTCGGGTGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
29913258 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
29913320 TTGGACAAGTTCGAAAGTTCGTCCGAGATCCAAGAGTGAAACAATTCTCACGT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
29913373 GAGTTACTTA
Statistics
Matches: 160, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 160 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29913741 original size:215 final size:216
Alignment explanation
Indices: 29913323--29914663 Score: 1364
Period size: 215 Copynumber: 6.3 Consensus size: 216
29913313 ATAAGTTTTG
* * * * * * * *
29913323 GACAAGTTCGAAAGTTCGTCCGAGATCCAAGAGTGAAACAATTCTCACGTGAGTTACTTATTAAT
1 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * ** * *
29913388 TAACAG-CCCAAACTTGTTTACAAAATGAAAAACTATTTTCACCAAATGATGTGA-TTTCTCAAG
66 TAAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAG
* * * * * *
29913451 CATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCATGAATACTTTAAGGAACCTAAGTT
130 CATAGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
*
29913516 ATAAAAGAACTCGTGAAAGTTT
195 ATAAAAGAACTCGTAAAAGTTT
*
29913538 GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
1 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * *
29913603 TTAAGGACCAAAACTTGCTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCCGAGC
66 TAAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGC
* * * * * ** *
29913668 GTAGAGTGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATACTTT-TGGAACCGAAGTTA
131 ATAGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
29913732 TAAAAGAACTCGTAAAAGTTT
196 TAAAAGAACTCGTAAAAGTTT
* * * * * * *
29913753 AACATGTCCGAAAATTAGTCCAAGAACGAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAAT
1 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * * * *
29913818 TCAAACACCAAAACTTGTTTACAAACTGATAAACTACTTAGACCAAATTATGCGA-TTTCCG-G-
66 TAAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGC
* * ** * * * *
29913880 --AGCATG---G----ACTGCTCGAAGGAACAGATCATCTTGAAAAGTTTTAGGAACCGAAGTTA
131 ATAGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
* * * *
29913936 TAAAAGAAATGGCAAATGTTT
196 TAAAAGAACTCGTAAAAGTTT
* * * * *
29913957 GACAAGTTCGAATGTTTGTCCTAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAAT
1 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * * * * * *
29914022 TCAAAA-ACCAAAACTT-TTCACGAAATGGCAAACTATTTAGGCCATACGGTGCGATTTTACGAG
66 T-AAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAG
* * * * * *
29914085 CATGGAATGTTCGAAAAATT-CTCGACGCAATGGATCGTCTTGAATACTTTAAGGTACCAAAGTT
130 CATAGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
*
29914149 ATAAAACAACTCGTAAAAGTTT
195 ATAAAAGAACTCGTAAAAGTTT
* * * *
29914171 TAAAAGTTC-AGAAGTTCATCCAAGAACCAAGAGAGAAACATTTCTCACGTAAATAAGTTTTTAA
1 GACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * *
29914235 TTAAAAGACCAAATCCTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAG
65 TTAAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAG
* * * * * *
29914300 CATGGAAATCTTTGAAAAACTGCCCGAAGGAATGGATCGTCTTAAATACTTTAAGGAATCGAAGT
130 CATAG-AATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
* * *
29914365 TAGAGAACAACTCGTAAAAGTTT
194 TATAAAAGAACTCGTAAAAGTTT
* * * ** * * *
29914388 -AAAATGTTCGAAAGTTTGTCTAAGAAGAAAGAGAGAAACAGTTGTCATGTAAATAAGTTTTTAA
1 GACAA-GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* *
29914452 TTAAAAGACCAAAACATT-TTT-CAAAATGACAAACTATTTAGACCAACTGATGCGATTTCCCGA
65 TTAAAAGACCAAAAC-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGA
* * * * *
29914515 GCA-AGGAATGTTTGGAAAATAGCTCGAAGGAATGGATCGCCATGAATACTTTCAGGAACCGAAG
129 GCATA-GAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* *
29914579 TTATAAAA-AAATTGTAAAAGTTT
193 TTATAAAAGAACTCGTAAAAGTTT
* * * * *
29914602 GACAAGTTC-AGATGTTCGACCAAGAACCAAGAGAGAAAAAATTCTTACATAAATAAGTTTTT
1 GACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
29914664 GACAAGTTCG
Statistics
Matches: 920, Mismatches: 179, Indels: 55
0.80 0.16 0.05
Matches are distributed among these distances:
203 53 0.06
204 102 0.11
205 4 0.00
207 1 0.00
208 4 0.00
210 4 0.00
211 1 0.00
213 7 0.01
214 176 0.19
215 295 0.32
216 144 0.16
217 127 0.14
218 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (216 bp):
GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
TAAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGC
ATAGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
TAAAAGAACTCGTAAAAGTTT
Found at i:29914598 original size:431 final size:425
Alignment explanation
Indices: 29913326--29914663 Score: 1367
Period size: 431 Copynumber: 3.1 Consensus size: 425
29913316 AGTTTTGGAC
* * * * * * * * *
29913326 AAGTTC-GAAAGTTCGTCCGAGATCCAAGAGTGAAACAATTCTCACGTGAGTTACTTATTAATTA
1 AAGTTCAGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTA
* * ** * * *
29913390 ACAGCCCAAACTTGTTTACAAAATGAAAAACTATTTTCACCAAATGATGTGATTTCTCAAGCATG
66 AAAGACCAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * * * * *
29913455 GAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCATGAATACTTTAAGGAACCTAAGTTATAA
131 GAATCTTT-GAAA-CTGC-CGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAA
* * * * *
29913520 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
193 AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTTGTCTAAGAAGCAAGAGAGAAACAATTCTCA
* * * *
29913585 CGTAAATAAGTTTTTAATTTAAGGACCAAAACTTGCTTACAAAATGACAAACTATTTAGACCAAA
258 CGTAAATAAGTTTTTAATTAAAAGACCAAAACTT--TTTCAAAATGACAAACTATTTAGACCAAC
* * * * **
29913650 TGATGGGATTTTCCGAGCGTA-GAGTGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATA
321 TGATGCGATTTTCCGAGC-AAGGAATGTTCGAAAAA-TTCTCGAAGGAATGGATCGTCTTGAATA
* *
29913714 CTTTTGGAACCGAAGTTATAAAAGAACTCGTAAAAG-TTTAA
384 CTTTAGGAACCGAAGTTATAAAACAACTCGTAAAAGTTTTAA
* * * * *
29913755 CA-TGTCCGAAAATT-AGTCCAAGAACGAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAAT
1 AAGT-TCAGAAAGTTCA-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * * * * *
29913818 TCAAACACCAAAACTTGTTTACAAACTGATAAACTACTTAGACCAAATTATGCGATTTCCGGAGC
64 TAAAAGACC-AAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
** * * *
29913883 ATGG-A-C--TG---CT--CGAAGGAACAGATCATCTTGAAA-AGTTTTAGGAACCGAAGTTATA
128 ATGGAATCTTTGAAACTGCCGAAGGAATGGATCGTCTT-AAATACTTTAAGGAACCGAAGTTATA
* * * * *
29913938 AAAGAAATGGCAAATGTTTGACAAGTTCGAATGTTTGTCCT-AG-AGCCAAGAGAGAAACAATTC
192 AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTTGT-CTAAGAAG-CAAGAGAGAAACAATTC
* * *
29914001 TTACGTAAATAAGTTTTTAATTCAAAA-ACCAAAAC-TTTTCACGAAATGGCAAACTATTTAGGC
255 TCACGTAAATAAGTTTTTAATT-AAAAGACCAAAACTTTTTCA--AAATGACAAACTATTTAGAC
* * * * *
29914064 CATAC-GGTGCGATTTTACGAGCATGGAATGTTCGAAAAATTCTCGACGCAATGGATCGTCTTGA
317 CA-ACTGATGCGATTTTCCGAGCAAGGAATGTTCGAAAAATTCTCGAAGGAATGGATCGTCTTGA
* *
29914128 ATACTTTAAGGTACCAAAGTTATAAAACAACTCGTAAAAGTTTTAA
381 ATACTTT-AGGAACCGAAGTTATAAAACAACTCGTAAAAGTTTTAA
*
29914174 AAGTTCAG-AAGTTCATCCAAGAACCAAGAGAGAAACATTTCTCACGTAAATAAGTTTTTAATTA
1 AAGTTCAGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTA
* * *
29914238 AAAGACCAAATCCTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCAT
66 AAAGACCAAA-CTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* *
29914303 GGAAATCTTTGAAAAACTGCCCGAAGGAATGGATCGTCTTAAATACTTTAAGGAATCGAAGTTAG
130 GG-AATCTTTG--AAACTG-CCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTAT
* * * * * *
29914368 AGAACAACTCGTAAAAGTTT-AAAATGTTCGAAAGTTTGTCTAAGAAGAAAGAGAGAAACAGTTG
191 AAAAGAACTCGTAAAAGTTTGACAA-GTTCGAAAGTTTGTCTAAGAAGCAAGAGAGAAACAATTC
*
29914432 TCATGTAAATAAGTTTTTAATTAAAAGACCAAAACATTTTTCAAAATGACAAACTATTTAGACCA
255 TCACGTAAATAAGTTTTTAATTAAAAGACCAAAAC-TTTTTCAAAATGACAAACTATTTAGACCA
* * * * * *
29914497 ACTGATGCGATTTCCCGAGCAAGGAATGTTTGGAAAATAGCTCGAAGGAATGGATCGCCATGAAT
319 ACTGATGCGATTTTCCGAGCAAGGAATGTTCGAAAAAT-TCTCGAAGGAATGGATCGTCTTGAAT
* * * *
29914562 ACTTTCAGGAACCGAAGTTATAAAA-AAATTGTAAAAGTTTGAC
383 ACTTT-AGGAACCGAAGTTATAAAACAACTCGTAAAAGTTTTAA
* * * *
29914605 AAGTTCAG-ATGTTCGA-CCAAGAACCAAGAGAGAAAAAATTCTTACATAAATAAGTTTTT
1 AAGTTCAGAAAGTTC-ATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
29914664 GACAAGTTCG
Statistics
Matches: 739, Mismatches: 130, Indels: 78
0.78 0.14 0.08
Matches are distributed among these distances:
416 4 0.01
417 30 0.04
418 181 0.24
419 122 0.17
420 7 0.01
421 1 0.00
422 1 0.00
423 2 0.00
426 1 0.00
427 1 0.00
428 3 0.00
429 3 0.00
430 63 0.09
431 268 0.36
432 46 0.06
433 6 0.01
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (425 bp):
AAGTTCAGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTA
AAAGACCAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
GAATCTTTGAAACTGCCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAG
AACTCGTAAAAGTTTGACAAGTTCGAAAGTTTGTCTAAGAAGCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTAATTAAAAGACCAAAACTTTTTCAAAATGACAAACTATTTAGACCAACTGATG
CGATTTTCCGAGCAAGGAATGTTCGAAAAATTCTCGAAGGAATGGATCGTCTTGAATACTTTAGG
AACCGAAGTTATAAAACAACTCGTAAAAGTTTTAA
Found at i:29914659 original size:214 final size:213
Alignment explanation
Indices: 29913889--29914663 Score: 819
Period size: 214 Copynumber: 3.6 Consensus size: 213
29913879 GAGCATGGAC
** * * * * * * * *
29913889 TGCTCGAAGGAACAGATCATCTTGAAAAGTTTTAGGAACCGAAGTTATAAAAGAAATGGCAAATG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAACAAATCGTAAAAG
* * * * * * *
29913954 TTTGACAAGTTCGAATGTTTGTCCTAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
66 TTTGAAAAGTTCGAAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * **
29914019 AATTCAAAA-ACCAAAAC-TTTTCACGAAATGGCAAACTATTTAGGCCATAC-GGTGCGATTTTA
131 AATT-AAAAGACCAAAACTTTTTCA--AAATGACAAACTATTTAGACCA-ACTGATGCGATTTCC
*
29914081 CGAGCATGGAATGTTCGAAAAA
192 CGAGCATGGAATGTTTGAAAAA
* * * * * *
29914103 TTCTCGACGCAATGGATCGTCTTGAATACTTTAAGGTACCAAAGTTATAAAACAACTCGTAAAAG
1 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAACAAATCGTAAAAG
* *
29914168 TTTTAAAAGTTC-AGAAGTTC-ATCCAAGAACCAAGAGAGAAACATTTCTCACGTAAATAAGTTT
66 TTTGAAAAGTTCGA-AAGTTCGA-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
29914231 TTAATTAAAAGACCAAATCCTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCC
129 TTAATTAAAAGACCAAA-ACT-TTTTCAAAATGACAAACTATTTAGACCAACTGATGCGATTTCC
*
29914296 CGAGCATGGAAATCTTTGAAAAA
192 CGAGCATGG-AATGTTTGAAAAA
* * * * * *
29914319 CTGCCCGAAGGAATGGATCGTCTTAAATACTTTAAGGAATCGAAGTTAGAGAACAACTCGTAAAA
1 -TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAACAAATCGTAAAA
* * * ** * * *
29914384 GTTT-AAAATGTTCGAAAGTTTGTCTAAGAAGAAAGAGAGAAACAGTTGTCATGTAAATAAGTTT
65 GTTTGAAAA-GTTCGAAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
29914448 TTAATTAAAAGACCAAAACATTTTTCAAAATGACAAACTATTTAGACCAACTGATGCGATTTCCC
129 TTAATTAAAAGACCAAAAC-TTTTTCAAAATGACAAACTATTTAGACCAACTGATGCGATTTCCC
* *
29914513 GAGCAAGGAATGTTTGGAAAA
193 GAGCATGGAATGTTTGAAAAA
* * * *
29914534 TAGCTCGAAGGAATGGATCGCCATGAATACTTTCAGGAACCGAAGTTATAAAA-AAATTGTAAAA
1 T-GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAACAAATCGTAAAA
* * * * *
29914598 GTTTGACAAGTTC-AGATGTTCGACCAAGAACCAAGAGAGAAAAAATTCTTACATAAATAAGTTT
65 GTTTGAAAAGTTCGA-AAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
29914662 TT
129 TT
29914664 GACAAGTTCG
Statistics
Matches: 461, Mismatches: 84, Indels: 32
0.80 0.15 0.06
Matches are distributed among these distances:
213 6 0.01
214 170 0.37
215 95 0.21
216 64 0.14
217 125 0.27
218 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (213 bp):
TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAACAAATCGTAAAAG
TTTGAAAAGTTCGAAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAAAAGACCAAAACTTTTTCAAAATGACAAACTATTTAGACCAACTGATGCGATTTCCCGAG
CATGGAATGTTTGAAAAA
Found at i:29914700 original size:62 final size:62
Alignment explanation
Indices: 29914599--29914784 Score: 255
Period size: 62 Copynumber: 3.0 Consensus size: 62
29914589 ATTGTAAAAG
* * * * *
29914599 TTTGACAAGTTCAGATGTTCGACCAAGAACCAAGAGAGAAAAAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29914661 TTTGACAAGTTCGGGTGTTCGTCCAAGAACCAAGTGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
29914723 TTTAACCAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAGACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29914785 ATTAATTAAC
Statistics
Matches: 109, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 109 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29915034 original size:555 final size:556
Alignment explanation
Indices: 29914175--29915219 Score: 1409
Period size: 555 Copynumber: 1.9 Consensus size: 556
29914165 AAGTTTTAAA
* *
29914175 AGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACATTTCTCACGTAAATAAGTTTTTAATTAAA
1 AGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAAA
* *
29914240 AGACCAAATCCTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGG
66 AGACCAAAACCTGTTTACAAAATGACAAACTATTTACACCAAATGATGCAATTTCCCGAGCATGG
* * *
29914305 AAATCTTTGAAAAACTGCCCGAAGGAATGGATCGTCTTAAATACTTTAAGGAATCGAAGTTAGAG
131 AAATCTTTGAAAAACTGCCCAAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTAGAA
* * * * *
29914370 AACAACTCGTAAAAGTTTAAAATGTTCGAAAGTTTGTCTAAGAAGAAAGAGAGAAACAGTTGTCA
196 AACAACTCGTAAAAGTTTAAAATGTTCGAAAATTAGTCCAAGAAGAAAGAGAGAAACAATTCTCA
* * *
29914435 TGTAAATAAGTTTTTAATTAAAAGACCAAAACATTTTTCAAAATGACAAACTATTTAGACCAACT
261 CGTAAATAAGTTTTTAATTAAAAGACCAAAACATTTTACAAAATGACAAACTATTTAGACCAAAT
* * * *
29914500 GATGCGATTTCCCGAGCAAGGAATGTTTGGAAAATAGCTCGAAGGAATGGATCGCCATGAATACT
326 GATGCGATTTCCCGAGCAAGGAATGTTCGAAAAATAGCTAGAAGGAATGGATCACCATGAATACT
* *
29914565 TTCAGGAACCGAAGTTATA-AAAAAATTGTAAAAGTTTGACAAGTTCAGATGTTCGACCAAGAAC
391 TTCAGGAACCGAAGTTATACAAAAAATCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAAC
*
29914629 CAAGAGAGAAA-AAATTCTTACATAAATAAGTTTTTGACAAGTTCGGGTGTTCGTCCAAGAACCA
456 CAAGAGA-AAACAAATTCTCACATAAATAAGTTTTTGACAAGTTCGGGTGTTCGTCCAAGAACCA
29914693 AGTGAGAAACAATTCTCACGTAAATAAGTTTTTAACC
520 AGTGAGAAACAATTCTCACGTAAATAAGTTTTTAACC
* ** * * *
29914730 AGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAGACAATTCTCACGTAACTAAGTTATTAATTAAC
1 AGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAAA
* * * ** *
29914795 AGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGG
66 AGACCAAAACCTGTTTACAAAATGACAAACTATTTACACCAAATGATGCAATTTCCCGAGCATGG
* * ** * * * * *
29914860 -AATGTTTGGAAATTTGCTCAAAGGAATGGATTGTCTTGAATACTTTAAGGAACCTAAGTTATAA
131 AAATCTTTGAAAAACTGCCCAAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTAGAA
* * *
29914924 AAGAACTCGTGAAAGTCTTACAA-GTTCGAAAATTAGTCCAAGAACG-AAGAGAGAAACAATTCT
196 AACAACTCGTAAAAGT-TTAAAATGTTCGAAAATTAGTCCAAGAA-GAAAGAGAGAAACAATTCT
* *
29914987 CACGTAAATAAGTTTTTAATTTAAAGACCAAAA-GTTGCTTACAAAATGACAAACTATTTAGACC
259 CACGTAAATAAGTTTTTAATTAAAAGACCAAAACATT--TTACAAAATGACAAACTATTTAGACC
* ** ** ** * * *
29915051 AAATGATGGGATTTTTCGAGCGTGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAA
322 AAATGATGCGATTTCCCGAGCAAGGAATGTTCGAAAAATAGCTAGAAGGAATGGATCACCATGAA
** * * * *
29915116 TACTTTTTGGAACCGAAGTTATACAAGAGATCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA
387 TACTTTCAGGAACCGAAGTTATACAAAAAATCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAA
* *
29915181 GAACCAAGAGAAAACCAATTCTCACGTAAATAAGTTTTT
452 GAACCAAGAGAAAACAAATTCTCACATAAATAAGTTTTT
29915220 AATTCAGCGG
Statistics
Matches: 418, Mismatches: 66, Indels: 11
0.84 0.13 0.02
Matches are distributed among these distances:
553 2 0.00
554 130 0.31
555 219 0.52
556 67 0.16
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (556 bp):
AGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAAA
AGACCAAAACCTGTTTACAAAATGACAAACTATTTACACCAAATGATGCAATTTCCCGAGCATGG
AAATCTTTGAAAAACTGCCCAAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTAGAA
AACAACTCGTAAAAGTTTAAAATGTTCGAAAATTAGTCCAAGAAGAAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTAAAAGACCAAAACATTTTACAAAATGACAAACTATTTAGACCAAAT
GATGCGATTTCCCGAGCAAGGAATGTTCGAAAAATAGCTAGAAGGAATGGATCACCATGAATACT
TTCAGGAACCGAAGTTATACAAAAAATCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAAC
CAAGAGAAAACAAATTCTCACATAAATAAGTTTTTGACAAGTTCGGGTGTTCGTCCAAGAACCAA
GTGAGAAACAATTCTCACGTAAATAAGTTTTTAACC
Found at i:29915117 original size:216 final size:215
Alignment explanation
Indices: 29914730--29915432 Score: 868
Period size: 216 Copynumber: 3.3 Consensus size: 215
29914720 GTTTTTAACC
* * * * *
29914730 AGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAGACAATTCTCACGTAACTAAGTTATTAA-TTAA
1 AGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAA
* ** * *
29914794 CAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATG
66 -AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTTCGAGCATG
* * * *
29914859 GAATGTTTG-GAAATTTGCTCAAAGGAATGGATTGTCTTGAATACTTTAAGGAACCTAAGTTATA
130 GAATGTTCGAAAAATTT-CTCAAAGGAATGGATTATCTTGAATACTTTAAGGAACCGAAGTTATA
*
29914923 AAAGAACTCGTGAAAGTCTT-ACA
194 AAAGAA-TCGTAAAAGT-TTGACA
* *
29914946 AGTTCGAAAATTAGTCCAAGAACGAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAA
1 AGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAA
* * * *
29915011 AGACCAAAAGTTGCTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCGAGCGTGG
66 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTTCGAGCATGG
** *
29915076 AATGTTCGAAAAATTTCT-AGAAGGAATGGATTATCTTGAATACTTTTTGGAACCGAAGTTATAC
131 AATGTTCGAAAAATTTCTCA-AAGGAATGGATTATCTTGAATACTTTAAGGAACCGAAGTTATAA
29915140 AAGAGATCGTAAAAGTTTGACA
195 AAGA-ATCGTAAAAGTTTGACA
* * *
29915162 AGTTCGGAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACGTAAATAAGTTTTTAATTCA
1 AGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAA-CAATTCTCACGTAAATAAGTTTTTAATTTA
** * * * *
29915226 GCGGCCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTTTGGAGCATG
65 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTTCGAGCATG
* * * * *
29915291 GAACGTTCAAAAAATTGCTCAAAGGAATGGATCATCTTGAATAC--TCAGGAACCGAAGTTATAA
130 GAATGTTCGAAAAATTTCTCAAAGGAATGGATTATCTTGAATACTTTAAGGAACCGAAGTTATAA
*
29915354 AAGAAATCGTAAAAGTTTGATA
195 AAG-AATCGTAAAAGTTTGACA
* * *
29915376 AGTTC-AGACGTTCA-TCCAAGAACC-AGAGAGAAACAATTCTTACATAAATAAGTTTTT
1 AGTTCGA-AAGTT-AGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
29915433 GACAAGTTCG
Statistics
Matches: 425, Mismatches: 51, Indels: 25
0.85 0.10 0.05
Matches are distributed among these distances:
213 27 0.06
214 57 0.13
215 7 0.02
216 322 0.76
217 12 0.03
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (215 bp):
AGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAA
AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTTCGAGCATGG
AATGTTCGAAAAATTTCTCAAAGGAATGGATTATCTTGAATACTTTAAGGAACCGAAGTTATAAA
AGAATCGTAAAAGTTTGACA
Found at i:29915440 original size:61 final size:62
Alignment explanation
Indices: 29915369--29915556 Score: 245
Period size: 62 Copynumber: 3.0 Consensus size: 62
29915359 ATCGTAAAAG
* * * * *
29915369 TTTGATAAGTTCAGACGTTCATCCAAGAACC-AGAGAGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** *
29915430 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAAACTCACGTAAATAAGTA
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29915492 TTTGGCAAGTT-TGAAAGTTCGTCCAAGAACCAAGAGAGAATCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29915554 TTT
1 TTT
29915557 TAATTCAAGG
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
61 28 0.25
62 82 0.75
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29915784 original size:62 final size:63
Alignment explanation
Indices: 29915709--29915959 Score: 348
Period size: 62 Copynumber: 4.0 Consensus size: 63
29915699 ATCGTAAAAG
* * * * *
29915709 TTTGACATGTTCAG-ATGTTAGTCCAAGAACCAAGAGAGAAATAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCAGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29915771 GTTGTCAAGTTCAG-ATGTTCGTCCAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29915833 TTTGACAAGTTC-GAAAGTTCGTCCAAGGACCTAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29915895 TTTGACAAGTT-TGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCAGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29915957 TTT
1 TTT
29915960 TAATTCAAGG
Statistics
Matches: 170, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
61 1 0.01
62 169 0.99
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (63 bp):
TTTGACAAGTTCAGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29916147 original size:403 final size:400
Alignment explanation
Indices: 29915375--29916575 Score: 1697
Period size: 403 Copynumber: 3.0 Consensus size: 400
29915365 AAAGTTTGAT
* * * * *
29915375 AAGTTCAGACGTTCATCCAAGAACCAGAGAGAAACAATTCTTACATAAATAAGTTTTTGACAAGT
1 AAGTTCAGATGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGT
** * *
29915440 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAAACTCACGTAAATAAGTATTTGGCAAGTTTG
66 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTG
* *
29915505 AAAGTTCGTCCAAGAACCAAGAGAGAATCAATTCTCACGTAAATAAGTTTTTTAATTCAAGGACA
131 AAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTAATTCAAGGACC
* *
29915570 AAAACTTGTTTACAAAAAGA-AAAGATATTTAGACCAAATTATGTGATTTCTCGAGCATGGAATG
196 AAAACTTGTTTACAAAAAGACAAA-CTATTTTGACCAAATTATGTGATTTCTCGAGCATGGAATG
* * * * * *
29915634 TTCAAAAAATTGCTTGAATGAATGGATCTTCTTGAATACTTTCAAGAACTAAAGTTATAAAAGAA
260 TTC-GAAAATTGC-TCAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTTATAAAAGAA
* * * *
29915699 ATCGTAAAAGTTTGACATGTTCAGATGTTAGTCCAAGAACCAAGAGAGAAATAATTCTTACGTAA
323 ATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAA
**
29915764 ATAAGTTGTTGTC
388 ATAAGTTGTTCAC
29915777 AAGTTCAGATGTTCGTCCAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG
1 AAGTTCAGATGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG
* * *
29915842 TTCGAAAGTTCGTCCAAGGACCTAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTT
65 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTT
* *
29915907 GAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTTACGTAAATAAGTTTTTTAATTCAAGGAC
130 GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTAATTCAAGGAC
* *
29915972 CAAAACTTGTTTACAAAAAGACAAACTATTTTGACCAAATTATGTGATTTCCCGAACATGGAATG
195 CAAAACTTGTTTACAAAAAGACAAACTATTTTGACCAAATTATGTGATTTCTCGAGCATGGAATG
* *
29916037 TTCGATAAATTCCTCCAAAGAATGGATCATCTTGAATAATTTCAGGAACCAAAGTTATAAAAGAA
260 TTCGA-AAATTGCT-CAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTTATAAAAGAA
*
29916102 ATCGTAAAAGTTTGAGAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAA
323 ATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAA
*
29916167 ATAAGTTTTTCAC
388 ATAAGTTGTTCAC
* *
29916180 AAGTTCGGATGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG
1 AAGTTCAGATGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG
* * *
29916245 TTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTTTTTGACAAGTTC
65 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTT
* * * * * * *
29916310 GGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACATAACTAAG-TTATTAATT-AACAGT
130 GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTAATTCAA-GGA
* * *
29916373 CCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAAT
194 CCAAAACTTGTTTACAAAAAGACAAACTATTTTGACCAAATTATGTGATTTCTCGAGCATGGAAT
* * * * * * *
29916438 GTTTGGAAATTTGCTCAACGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAATGA
259 G-TTCGAAAATTGCTCAA-AGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTTATAAAAGA
* * * * * * * *
29916503 ACTCATGAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCGAGAGAGAAACAATTCTCACGTA
322 AATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTA
29916568 AATAAGTT
387 AATAAGTT
29916576 TTAATTTAAA
Statistics
Matches: 716, Mismatches: 76, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
401 5 0.01
402 203 0.28
403 505 0.71
404 3 0.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (400 bp):
AAGTTCAGATGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGT
TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTG
AAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTAATTCAAGGACC
AAAACTTGTTTACAAAAAGACAAACTATTTTGACCAAATTATGTGATTTCTCGAGCATGGAATGT
TCGAAAATTGCTCAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTTATAAAAGAAATC
GTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATA
AGTTGTTCAC
Found at i:29916197 original size:62 final size:62
Alignment explanation
Indices: 29916112--29916359 Score: 397
Period size: 62 Copynumber: 4.0 Consensus size: 62
29916102 ATCGTAAAAG
* * *
29916112 TTTGAGAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29916174 TTTCACAAGTTCGGATGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29916236 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29916298 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACATAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29916360 ATTAATTAAC
Statistics
Matches: 172, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 172 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29916678 original size:215 final size:215
Alignment explanation
Indices: 29916298--29916791 Score: 611
Period size: 215 Copynumber: 2.3 Consensus size: 215
29916288 TAAATAAGTT
* * *
29916298 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACATAACTAAGTTATT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT-TT
* * * * *
29916363 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCG
65 AATTAACAGACCAAAACTTGTTTACAAAATCACAAACAATTTACACCAAATGATGGGATTTCTCG
* * * * **
29916428 AGCATGGAATGTTTGGAAATTTGCTCAACGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAG
130 AGCATGGAATGTTAGAAAATTTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACAGAAG
* * *
29916493 TTATAAATGAACTCATGAAAG
195 TTATAAAAGAAATCATAAAAG
* * *
29916514 TTTGACAAGTTCGAAAGTTCATCCAAGAACCGAGAGAGAAACAATTCTCACGTAAATAAGTTTTA
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTA
* *
29916579 ATTTAA-AGACCAAAACTTGTTTACAAGATCACAAACAATTTAGACCAAATGATGGGATTT-TCC
66 A-TTAACAGACCAAAACTTGTTTACAAAATCACAAACAATTTACACCAAATGATGGGATTTCT-C
* * ** *
29916642 TAGCATGGAATGTTAGAAAAATTT-CT-AGAAGGAATGGATTATCTTGAATACTTTTTGGAATAG
129 GAGCATGGAATGTTAG-AAAATTTGCTCA-AAGGAATGGATCATCTTGAATACTTTAAGGAACAG
*
29916705 AAGTTATAAAAGAAATCGTAAAAG
192 AAGTTATAAAAGAAATCATAAAAG
* ** * *
29916729 TTTGTCAAGTTCGGGTGTTCGTCCAAGAACCAAGAGAG-AACCATTCTTACGTAAATAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
29916792 TGATAAGTTC
Statistics
Matches: 238, Mismatches: 36, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
214 25 0.11
215 147 0.62
216 66 0.28
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (215 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTA
ATTAACAGACCAAAACTTGTTTACAAAATCACAAACAATTTACACCAAATGATGGGATTTCTCGA
GCATGGAATGTTAGAAAATTTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACAGAAGT
TATAAAAGAAATCATAAAAG
Found at i:29916815 original size:61 final size:62
Alignment explanation
Indices: 29916729--29916913 Score: 255
Period size: 62 Copynumber: 3.0 Consensus size: 62
29916719 ATCGTAAAAG
* ** * * *
29916729 TTTGTCAAGTTCGGGTGTTCGTCCAAGAACCAAGAGAGAA-CCATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGTT
*
29916790 TTTGATAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGTT
* * * * *
29916852 TTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGCAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGTT
29916914 ATTAATTAAC
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
61 35 0.32
62 75 0.68
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGTT
Found at i:29917171 original size:62 final size:62
Alignment explanation
Indices: 29917068--29917256 Score: 236
Period size: 62 Copynumber: 3.0 Consensus size: 62
29917058 ATCGTAAAAG
* * * * *
29917068 TTTGACAAGTTCAGATTTTCATCCATGAACCGAG-GGAGAAACAATTCTTACGTAGCTAAGTT
1 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGG-GAAACAATTCTTACGTAACTAAGTT
* * *
29917130 TTTGACAAGTTCGGATGTTCATCCAAGAGCCAAGAGGGAAACAATTCTTACTTAAATAAGTT
1 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGGGAAACAATTCTTACGTAACTAAGTT
* * * * * *
29917192 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCCAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGGGAAACAATTCTTACGTAACTAAGTT
29917254 TTT
1 TTT
29917257 ATTTTACAGT
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
62 107 0.98
63 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (62 bp):
TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGGGAAACAATTCTTACGTAACTAAGTT
Found at i:29917221 original size:340 final size:338
Alignment explanation
Indices: 29916514--29917471 Score: 1230
Period size: 339 Copynumber: 2.8 Consensus size: 338
29916504 CTCATGAAAG
* * *
29916514 TTTGACAAGTTCGAAAGTTCATCCAAGAACCGAGAGAGAAACAATTCTCACGTAAATAAGTTTTA
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTA
* * * ** *
29916579 ATTTAA-AGACCAAAACTTGTTTACAAGATCACAAACAATTTAGACCAAATGATGGGATTT-TCC
66 A-TTAACAGTCCAAAACTTGTTTACAAAATCACAAACTATTTTCACCAAATGATGTGATTTCT-C
* * ** **
29916642 TAGCATGGAATGTTAGAAAAATTT-CT-AGAAGGAATGGATTATCTTGAATACTTTTTGGAA-TA
129 TAGCATGGAATGTTTG-GAAATTTGCTCA-AAGGAATGGATCGTCTTGAATACTTTAAGGAACT-
* * * *
29916704 GAAGTTATAAAAGAAATCGTAAAAGTTTGTCAAGTTCGGGTGTTCGTCCAAGAACCAAGAGAGAA
191 GAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCAGATGTTCATCCAAGAACCAAGAGAGAA
* * *
29916769 CCATTCTTACGTAAATAAGTTTTTGATAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAGCAA
256 CAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAA
29916834 TTCTCACGTAAATAAGTT
321 TTCTCACGTAAATAAGTT
* * *
29916852 TTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGCAACTAAGTTATT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT-TT
*
29916917 AATTAACAGTCCAAAACTTGTTTACAAAATCACAAACTATTTTCACCAAATGATGTGATTTCTCG
65 AATTAACAGTCCAAAACTTGTTTACAAAATCACAAACTATTTTCACCAAATGATGTGATTTCTCT
* *
29916982 AGCATGGATTGTTTGGAAATTTGCTCAAAGGGATGGATCGTCTTGAATACTTTAAGGAACTGAAG
130 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAG
* * * *
29917047 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCAGATTTTCATCCATGAACCGAGGGAGAAACAA
195 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCAGATGTTCATCCAAGAACCAAGAGAG-AACAA
** * * *
29917112 TTCTTACGTAGCTAAGTTTTTGACAAGTTCGGATGTTCATCCAAGAGCCAAGAGGGAAACAATTC
259 TTCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* *
29917177 TTACTTAAATAAGTT
324 TCACGTAAATAAGTT
* * *
29917192 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCCAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAG-TTTT
* * * * * * **
29917257 ATTTTACAGTCCAAAACTTGATCACAAAATGATAAACTATTTTCACCAAATGATGTGATTTCAAT
65 AATTAACAGTCCAAAACTTGTTTACAAAATCACAAACTATTTTCACCAAATGATGTGATTTCTCT
29917322 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGA-CGTCTTGAATACTTTAAGGAACCT-AA
130 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CTGAA
* * * * ** * *
29917385 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTT-TGAAAGTTTGTCCAAGAACCAAAAGGGAAAC
194 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCAG-ATGTTCATCCAAGAACCAAGAGAG-AAC
*
29917449 AATTCTCACGTAAATAAGTTTTT
257 AATTCTTACGTAAATAAGTTTTT
29917472 AATTTAAAGA
Statistics
Matches: 539, Mismatches: 71, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
338 67 0.12
339 243 0.45
340 227 0.42
341 2 0.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (338 bp):
TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTA
ATTAACAGTCCAAAACTTGTTTACAAAATCACAAACTATTTTCACCAAATGATGTGATTTCTCTA
GCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT
TATAAAAGAAATCGTAAAAGTTTGACAAGTTCAGATGTTCATCCAAGAACCAAGAGAGAACAATT
CTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
ACGTAAATAAGTT
Found at i:29917687 original size:216 final size:217
Alignment explanation
Indices: 29917192--29918127 Score: 994
Period size: 216 Copynumber: 4.3 Consensus size: 217
29917182 TAAATAAGTT
* *
29917192 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCCAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
* * * * * ** **
29917257 ATTTTACAGTCCAAAACTTGATCACAAAATGATAAACTATTTTCACCAAATGATGTGATTTCAAT
66 AATTTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCACG
* * *
29917322 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGA-CGTCTTGAATACTTTAAGGAACCT-AA
131 AGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTGAA
* *
29917385 GTTATAAAAGAACTCGTGAAAG
196 GTTATAAAAGAAATCGTAAAAG
* * * * * *
29917407 TTTGACAAGTTTGAAAGTTTGTCCAAGAACCAAAAGGGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
* *
29917472 AATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTC-C
66 AATTTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGA-TTTCAC
* * * **
29917536 GAGCATGGAATGTTCGAAAAATTTC-CAGAAGGAATGGA-CTATCTTGAATACTTTTTGGAA-CT
130 GAGCATGGAATGTTTGAAAAATTGCTC-GAAGGAATGGATC-GTCTTGAATACTTTAAGGAACCT
* *
29917598 GATGTTAGAAAAGAAATCGTAAAAG
193 GAAGTTATAAAAGAAATCGTAAAAG
* * *
29917623 TTTGGCAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
* * * * *
29917688 ATTTTACAGTCCAAAACTTGTTTACAAAATGATAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCACG
* * * * * * * * *
29917753 AGCACGGGATGTTTGGAAAATCGCTCGAAGGAATTGATCGTCTTAAATACTTTAGGGAATC-AAA
131 AGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTGAA
* * *
29917817 TTTATAAAAGAACTAGTAAAAG
196 GTTATAAAAGAAATCGTAAAAG
* * * * * * *
29917839 TTTCACATGTCCGGAAATTAGTCCAAGAACAAAGAGAGAAACAATTCTTACGTAAACAAGTTTAT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAC-------T
* * * * * *
29917904 AAGTTTTTAATTCAAACTCCAAAACTTGTTTACAAACTGACAAACTATTTAGAACAAATTATGCG
58 AAGTTTTTAATTTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTG
* * *
29917969 ATTTC-CTGAGCATGGACTGTTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGATTACTTTCAA
123 ATTTCAC-GAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT-AA
*
29918033 -GAA-CTGAAGTTATAAAAGAAATCGCAAAAG
186 GGAACCTGAAGTTATAAAAGAAATCGTAAAAG
* * * * * * *
29918063 TTTGACAAGTTC-GAATGTTCATCTAAGAACTAAGAAAGAAACAATACTCACGTAAATATGTTTT
1 TTTGACAAGTTCGGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTT
29918127 T
65 T
29918128 GACAAGTTCG
Statistics
Matches: 593, Mismatches: 108, Indels: 39
0.80 0.15 0.05
Matches are distributed among these distances:
214 1 0.00
215 145 0.24
216 265 0.45
217 6 0.01
223 7 0.01
224 168 0.28
225 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (217 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
AATTTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCACG
AGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTGAA
GTTATAAAAGAAATCGTAAAAG
Found at i:29918105 original size:440 final size:430
Alignment explanation
Indices: 29917192--29918127 Score: 1173
Period size: 440 Copynumber: 2.1 Consensus size: 430
29917182 TAAATAAGTT
* *
29917192 TTTGACAAGTTTGGAA-GTTCGTCCAAGAACCCAGAGAGAAACAATTCTCACGTAACTAAGTTTT
1 TTTGACAAG-TTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAA-TCTCACGTAACTAAGTTTT
29917256 TATTTTACAGTCCAAAACTTGATCACAAAATGATAAACTATTTTCACCAAATGATGTGATTTCAA
64 TATTTTACAGTCCAAAACTTGATCACAAAATGATAAACTATTTTCACCAAATGATGTGATTTCAA
* * * * * *
29917321 TAGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGACGTCTTGAATACTTTAAGGAACCTAAG
129 GAGCACGGAATGTTTGGAAAATCGCTCAAAGGAATGGACGTCTTAAATACTTTAAGGAACCAAAG
* * * ** * *
29917386 TTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTGTCCAAGAACCAAAAGGGAAACAA
194 TTATAAAAGAACTAGTAAAAGTTTCACAAGTCGGAAAGTTAGTCCAAGAACCAAAAGAGAAACAA
* *
29917451 TTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
259 TTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAATGACAAACTATTTAG
* * * *
29917516 ACCAAATGATGGGATTTTCCGAGCATGGAATGTTCGAAAAATTTCCAGAAGGAATGGACTATCTT
324 AACAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGCCAGAAGGAATAGACTATCTT
*** * *
29917581 GAATACTTTTTGGAACTGATGTTAGAAAAGAAATCGTAAAAG
389 GAATACTTTCAAGAACTGAAGTTAGAAAAGAAATCGCAAAAG
* *
29917623 TTTGGCAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAA-TCTCACGTAACTAAGTTTTT
* * * **
29917688 ATTTTACAGTCCAAAACTTGTTTACAAAATGATAAACTATTTTGACCAAATGATGTGATTTCTCG
65 ATTTTACAGTCCAAAACTTGATCACAAAATGATAAACTATTTTCACCAAATGATGTGATTTCAAG
* * * * * *
29917753 AGCACGGGATGTTTGGAAAATCGCTCGAAGGAATTGATCGTCTTAAATACTTTAGGGAATCAAAT
130 AGCACGGAATGTTTGGAAAATCGCTCAAAGGAATGGA-CGTCTTAAATACTTTAAGGAACCAAAG
*
29917818 TTATAAAAGAACTAGTAAAAGTTTCACATGTCCGGAAA-TTAGTCCAAGAA-CAAAGAGAGAAAC
194 TTATAAAAGAACTAGTAAAAGTTTCACAAGT-CGGAAAGTTAGTCCAAGAACCAAA-AGAGAAAC
* * *
29917881 AATTCTTACGTAAACAAGTTTATAAGTTTTTAATTCAAACTCCAAAACTTGTTTACAAACTGACA
257 AATTCTCACGT----AA----ATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAATGACA
* * *
29917946 AACTATTTAGAACAAATTATGCGA-TTTCCTGAGCATGGACTGTTTGAAAAATTGCTC-GAAGGA
314 AACTATTTAGAACAAATGATGCGATTTTCC-GAGCATGGAATGTTCGAAAAATTGC-CAGAAGGA
* * *
29918009 ATAGA-TCGTCTTGATTACTTTCAAGAACTGAAGTTATAAAAGAAATCGCAAAAG
377 ATAGACT-ATCTTGAATACTTTCAAGAACTGAAGTTAGAAAAGAAATCGCAAAAG
* * * * * *
29918063 TTTGACAAGTTCGAATGTTCATCTAAGAACTAAGAAAGAAACAATACTCACGTAAATATGTTTTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAAT-CTCACGTAACTAAGTTTTT
29918128 GACAAGTTCG
Statistics
Matches: 431, Mismatches: 58, Indels: 23
0.84 0.11 0.04
Matches are distributed among these distances:
430 4 0.01
431 149 0.35
432 77 0.18
433 4 0.01
436 2 0.00
439 7 0.02
440 187 0.43
441 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (430 bp):
TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATCTCACGTAACTAAGTTTTTA
TTTTACAGTCCAAAACTTGATCACAAAATGATAAACTATTTTCACCAAATGATGTGATTTCAAGA
GCACGGAATGTTTGGAAAATCGCTCAAAGGAATGGACGTCTTAAATACTTTAAGGAACCAAAGTT
ATAAAAGAACTAGTAAAAGTTTCACAAGTCGGAAAGTTAGTCCAAGAACCAAAAGAGAAACAATT
CTCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAATGACAAACTATTTAGAA
CAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGCCAGAAGGAATAGACTATCTTGA
ATACTTTCAAGAACTGAAGTTAGAAAAGAAATCGCAAAAG
Found at i:29918134 original size:62 final size:62
Alignment explanation
Indices: 29918063--29918309 Score: 345
Period size: 62 Copynumber: 4.0 Consensus size: 62
29918053 ATCGCAAAAG
* * * * * *
29918063 TTTGACAAGTTCGAATGTTCATCTAAGAACTAAGAAAGAAACAATACTCACGTAAATATGTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29918125 TTTGACAAGTTCGGATGTTCGTCCAAGAACTAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29918187 TTTGACAA-ATCGGACT-TTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTC-GAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29918248 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29918310 ATGAATTAAC
Statistics
Matches: 164, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
61 54 0.33
62 110 0.67
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29918239 original size:123 final size:123
Alignment explanation
Indices: 29918087--29918309 Score: 365
Period size: 123 Copynumber: 1.8 Consensus size: 123
29918077 ATGTTCATCT
* * * *
29918087 AAGAACTAAGAAAGAAACAATACTCACGTAAATATGTTTTTGACAAGTTCGGATGTTCGTCCAAG
1 AAGAACCAAGAAAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAG
* *
29918152 AACTAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTGACAAATCGGACTTTTGTCC
66 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAATCGGACTTTTGTCC
* *
29918210 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAG
1 AAGAACCAAGAAAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAG
*
29918275 AACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
66 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29918310 ATGAATTAAC
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
123 91 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.25
Consensus pattern (123 bp):
AAGAACCAAGAAAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAG
AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAATCGGACTTTTGTCC
Found at i:29918589 original size:62 final size:62
Alignment explanation
Indices: 29918481--29918712 Score: 329
Period size: 62 Copynumber: 3.7 Consensus size: 62
29918471 GGTTTGAATT
* * * *
29918481 TTCGTCCAAGAACAGAGAGAGAAACATTTTTTCACGTAAATAAGTTTTTGACAAGTTTGGAAG
1 TTCGTCCAAGAACAAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAG
* * * *
29918544 TTCGCCCAAAAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGATAAGTTCAGAAG
1 TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAG
* * * *
29918606 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGCAAATAAGTTTTTGACAAGTTCGAAAG
1 TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAG
* *
29918668 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
29918713 ATTAATTAAC
Statistics
Matches: 150, Mismatches: 19, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
62 127 0.85
63 23 0.15
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (62 bp):
TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAG
Found at i:29918678 original size:403 final size:401
Alignment explanation
Indices: 29917921--29918931 Score: 1476
Period size: 403 Copynumber: 2.5 Consensus size: 401
29917911 TAATTCAAAC
* ** * * *
29917921 TCCAAAACTTGTTTACAAACTGACAAACTATTTAGAACAAATTATGCGATTTC-CTGAGCATGGA
1 TCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTC-GAGCATGGA
* * * * * *
29917985 CTG-TTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGATTACTTTCAA-GAACTGAAGTTATAA
65 ATGTTTTG-AAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTT-AAGGAACCGAAGTTATAA
* * * *
29918048 AAGAAATCGC-AAAAGTTTGACAAGTTCGAATGTTCATCTAAGAACTA-AGAAAGAAACAATACT
128 AAGAAATC-CTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAGAAC-AGAGAGAGAAACAATTCT
* * * * * *
29918111 CACGTAAATATGTTTTTGACAAGTTCGGATGTTCGTCCAAGAACTAAGAGAGAACCAATTCTCAC
191 CACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGCCCAAAAACAAAGAGAGAAACAATTCTCAC
* ** * *
29918176 GTAAATAAGTTTTTGACAAATCGGACTTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
256 GTAAATAAGTTTTTGACAAATCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAA
29918241 ATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTA
321 ATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTA
29918306 AGTTATGAATTAACAG
386 AGTTATGAATTAACAG
* *
29918322 TTCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATAGAA
1 TCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAA
* *
29918387 TGTTTTGAAATTTGCTCAAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
66 TGTTTTGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * * *
29918452 AAATCCTAAAAGTTTGGCAGGTTTGAATTTTCGTCCAAGAACAGAGAGAGAAACATTTTTTCACG
131 AAATCCTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAGAACAGAGAGAGAAACA-ATTCTCACG
*
29918517 TAAATAAGTTTTTGACAAGTTTGGAAGTTCGCCCAAAAACAAAGAGAGAAACAATTCTCACGTAA
195 TAAATAAGTTTTTGACAAGTTCGGAAGTTCGCCCAAAAACAAAGAGAGAAACAATTCTCACGTAA
* * *
29918582 ATAAGTTTTTGATAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGCAAATA
260 ATAAGTTTTTGACAA-ATCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATA
29918647 AGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGT
324 AGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGT
*
29918712 TATTAATTAACAG
389 TATGAATTAACAG
29918725 TCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAA
1 TCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAA
* *
29918790 TGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAG
66 TGTTTTGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * *
29918855 AACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAAC-GAAGAGAGAAACAATTCTCACG
131 AAATCCTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAGAACAG-AGAGAGAAACAATTCTCACG
29918919 TAAATAAGTTTTT
195 TAAATAAGTTTTT
29918932 AATTTAAAGA
Statistics
Matches: 544, Mismatches: 58, Indels: 15
0.88 0.09 0.02
Matches are distributed among these distances:
400 4 0.01
401 148 0.27
402 104 0.19
403 288 0.53
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (401 bp):
TCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAA
TGTTTTGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
AAATCCTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAGAACAGAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTGACAAGTTCGGAAGTTCGCCCAAAAACAAAGAGAGAAACAATTCTCACGTAAA
TAAGTTTTTGACAAATCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAG
TTTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTA
TGAATTAACAG
Found at i:29919029 original size:216 final size:216
Alignment explanation
Indices: 29918651--29920223 Score: 1860
Period size: 216 Copynumber: 7.3 Consensus size: 216
29918641 CAAATAAGTT
* *
29918651 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** *
29918716 AATT-AACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTC
66 AATTCAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * * *
29918780 GAGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAA
130 GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
29918845 GTTATAAAAGAACTCGTGAAAG
195 GTTATAAAAGAACTCGTAAAAG
*
29918867 TTTGACAAGTTCGAAAGTTCGTCCAAGAACGAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
29918932 AATTTAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCG
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCG
* ** ** **
29918997 AGCATGGAATGTTCGAAAAATTTCTAAAAGGAATGGATTATCTTGAATACTTTTTGGAACCGAAG
131 AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
*
29919062 TTATAAAAGAAATCGTAAAAG
196 TTATAAAAGAACTCGTAAAAG
* * * *
29919083 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * * *
29919148 ACTTTACAGTCCAAAACTTGTTTACAAAATGATAAACTACTTAGACCAAATTACGCGATTTCTCG
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCG
* ** * * *
29919213 ATCATGGGGTGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAG
131 AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
29919278 TTATAAAAGAACTCGTAAAAG
196 TTATAAAAGAACTCGTAAAAG
* * * * * * * * *
29919299 TTTCACATGTTCAAAAATTAGTCCAAGAACGACGAGAGAAACAATTCT-AGGGAAATAAG-TTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
29919362 AATTCAAACACCAAAACTTGTTTACAAACTGACAAACTACTTAGACCAAATTATGCGATTTCCCG
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCG
* ** * * *
29919427 AGCATGGACTGTTCGAAAAATTGCTCGAAGGAACAGATCGTCTTGAATACTTTCAGGAACCAAAC
131 AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * *
29919492 TTATAAAAGAAATAGAAAAAG
196 TTATAAAAGAACTCGTAAAAG
* * * * *
29919513 TTTGACAAGTTC-AGATGTTCATCCAAGAGCCAAGAGAGGAACAATTCTGACGTAAATAAGTTTT
1 TTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * * * * *
29919577 TAATTCAAAAACCAAAACATGTTTACAAATTGGCAAACTATTTAGGCCATACGGTTCGATTT-TA
65 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-
* * *
29919641 CGAGCATGGAATGTTCGAAAAATT-CTCGAAGCAATAGATCGTCTTGAATACTTTAAGGTACCGA
129 CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
29919705 AGTTATAAAAGAACTCGTAAAAG
194 AGTTATAAAAGAACTCGTAAAAG
* * * *
29919728 TTTGAAAAGTT-TAGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
29919792 TAATTGAAAGACCAAATCCTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTTT
65 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * * * * *
29919857 GAGTATGGAAATCTTCGAAAAACTACCCGAAGGAATGGATCGTCTTGAATACTTTAGGGAATCGA
130 GAGCATGG-AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
*
29919922 AGTTATAAAATAACTCGTAAAAG
194 AGTTATAAAAGAACTCGTAAAAG
* * * *
29919945 TTT-AAAATGTCCGAAAGTTCGTCTAAGAA-CAAGGAGAGAAACAGTTCTCACGTAAATAAGTTT
1 TTTGACAA-GTTCGAAAGTTCGTCCAAGAACCAA-GAGAGAAACAATTCTCACGTAAATAAGTTT
*
29920008 TTAATTCAAAGA-CAAAAGCATT-TTT-CAAAATAACAAACTATTTAGACCAAATGATGCGATTT
64 TTAATTCAAAGACCAAAA-C-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * ** * * **
29920070 CCCGGGCAAGGAATGTTTGGAAAACAGCTCGAAGGAATGGATAGTCATGAATACTTTCTGGAACC
127 CTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* *
29920135 GAAGTTATAAAA-AAATCATAAAAG
192 GAAGTTATAAAAGAACTCGTAAAAG
* * * *
29920159 TTTGACAAGTTC-AGATGTTCGTCCAAGAACCAAGAGAGAAAAAATTCTTACATAAATAAGTTTT
1 TTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
29920223 T
65 T
29920224 GACAAGTTCA
Statistics
Matches: 1155, Mismatches: 185, Indels: 36
0.84 0.13 0.03
Matches are distributed among these distances:
213 2 0.00
214 225 0.19
215 247 0.21
216 560 0.48
217 119 0.10
218 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCG
AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
TTATAAAAGAACTCGTAAAAG
Found at i:29919984 original size:646 final size:646
Alignment explanation
Indices: 29918662--29920223 Score: 1985
Period size: 646 Copynumber: 2.4 Consensus size: 646
29918652 TTGACAAGTT
*
29918662 CGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATT--AACAG
1 CGAAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTT-TTAATTCAAACA-
** * *
29918725 TCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAA
63 -CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * *
29918790 TGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAG
127 TGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCAAAGTTATAAAAG
* * * * *
29918855 AACTCGTGAAAGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACGAAGAGAGAAACAATTCTCACG
192 AAATAGTAAAAGTTTGACAAGTTCAG-ATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * *
29918919 TAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATG
256 TAAATAAGTTTTTAATTCAAAAACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAACG
* * * * *
29918984 ATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTTCTAAAAGGAATGGATTATCTTGAATACTT
321 ATGCGATTTTACGAGCATGGAATGTTCGAAAAATTTCTAAAAGCAATAGATCATCTTGAATACTT
** * * *
29919049 TTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACC
386 TAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGAAAAGTTCAGAAGTTCATCCAAGAACC
* * * * * *
29919114 AAGAGAGAAACAATTCTCACGTAACTAAGTTTTTACTTTACAGTCCAAAACTTGTTTACAAAATG
451 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACCTGTTTACAAAATG
* * ** * * * * * *
29919179 ATAAACTACTTAGACCAAATTACGCGATTTCTCGATCATGGGGTGTTTGGAAAATTGCTCGAAGG
516 ACAAACTACTTAGACCAAATGACGCGATTTCTCGATCATGGAATCTTCGAAAAACTACCCGAAGG
* *
29919244 AATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTCACATGT
581 AATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAAAATGT
*
29919309 T
646 C
* * * * * *
29919310 CAAAAATTAGTCCAAGAACGACGAGAGAAACAATTCT-AGGGAAATAAGTTTTAATTCAAACACC
1 CGAAAGTTCGTCCAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCAAACACC
* * * *
29919374 AAAACTTGTTTACAAACTGACAAACTACTTAGACCAAATTATGCGATTTCCCGAGCATGGACTGT
65 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * ** *
29919439 TCGAAAAATTGCTCGAAGGAACAGATCGTCTTGAATACTTTCAGGAACCAAACTTATAAAAGAAA
130 TTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCAAAGTTATAAAAGAAA
* * * * *
29919504 TAGAAAAAGTTTGACAAGTTCAGATGTTCATCCAAGAGCCAAGAGAGGAACAATTCTGACGTAAA
195 TAGTAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * * * * *
29919569 TAAGTTTTTAATTCAAAAACCAAAACATGTTTACAAATTGGCAAACTATTTAGGCCATACGGTTC
260 TAAGTTTTTAATTCAAAAACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAACGATGC
** *
29919634 GATTTTACGAGCATGGAATGTTCGAAAAA-TTCTCGAAGCAATAGATCGTCTTGAATACTTTAAG
325 GATTTTACGAGCATGGAATGTTCGAAAAATTTCTAAAAGCAATAGATCATCTTGAATACTTTAAG
* * *
29919698 GTACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTTAGAAGTTCATCCAAGAACCAAGA
390 GAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGAAAAGTTCAGAAGTTCATCCAAGAACCAAGA
* *
29919763 GAGAAATAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAATCCTGTTTACAAAATGACAA
455 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACCTGTTTACAAAATGACAA
* * * *
29919828 ACTATTTAGACCAAATGATGCGATTTTTTGAGT-ATGGAAATCTTCGAAAAACTACCCGAAGGAA
520 ACTACTTAGACCAAATGACGCGATTTCTCGA-TCATGG-AATCTTCGAAAAACTACCCGAAGGAA
* * * *
29919892 TGGATCGTCTTGAATACTTTAGGGAATCGAAGTTATAAAATAACTCGTAAAAGTTTAAAATGTC
583 TGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAAAATGTC
* * *
29919956 CGAAAGTTCGTCTAAGAACAAGGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGA-
1 CGAAAGTTCGTCCAAGAACAA-GAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAACAC
* * *
29920020 CAAAAGCATT-TTT-CAAAATAACAAACTATTTAGACCAAATGATGCGATTTCCCGGGCAAGGAA
64 CAAAA-C-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
** * * * *
29920083 TGTTTGGAAAACAGCTCGAAGGAATGGATAGTCATGAATACTTTCTGGAACCGAAGTTATAAAA-
127 TGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCAAAGTTATAAAAG
* * *
29920147 AAATCA-TAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAAAAATTCTTACA
192 AAAT-AGTAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
29920211 TAAATAAGTTTTT
256 TAAATAAGTTTTT
29920224 GACAAGTTCA
Statistics
Matches: 778, Mismatches: 124, Indels: 26
0.84 0.13 0.03
Matches are distributed among these distances:
645 173 0.22
646 428 0.55
647 123 0.16
648 52 0.07
649 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (646 bp):
CGAAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCAAACACCA
AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
TGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCAAAGTTATAAAAGAAAT
AGTAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
AAGTTTTTAATTCAAAAACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAACGATGCG
ATTTTACGAGCATGGAATGTTCGAAAAATTTCTAAAAGCAATAGATCATCTTGAATACTTTAAGG
AACCGAAGTTATAAAAGAAATCGTAAAAGTTTGAAAAGTTCAGAAGTTCATCCAAGAACCAAGAG
AGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACCTGTTTACAAAATGACAAA
CTACTTAGACCAAATGACGCGATTTCTCGATCATGGAATCTTCGAAAAACTACCCGAAGGAATGG
ATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAAAATGTC
Found at i:29920256 original size:62 final size:62
Alignment explanation
Indices: 29920159--29920308 Score: 210
Period size: 62 Copynumber: 2.4 Consensus size: 62
29920149 ATCATAAAAG
* * *
29920159 TTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAAAAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAAAATACTCACATAAATAAGTT
* * * * *
29920221 TTTGACAAGTTCAGAAATTTGTCCAAGAACTAAGAGAGAAATAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAAAATACTCACATAAATAAGTT
* *
29920283 TTTGCCAAGTTCGGAAGTTCGTCCAA
1 TTTGACAAGTTCAGAAGTTCGTCCAA
29920309 AGAGAGAACC
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 76 1.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAAAATACTCACATAAATAAGTT
Found at i:29920577 original size:62 final size:62
Alignment explanation
Indices: 29920508--29920680 Score: 274
Period size: 62 Copynumber: 2.8 Consensus size: 62
29920498 AAGTTCAGAT
* * *
29920508 GTTCGTCCAAGAACCAAGAGTGAAACAATTCTTACATAAATAAGTTTTTGACAAGTTCGAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAA
* * *
29920570 GTTCGTCCAAGAACTAAGAGAGAAACAATACCCACGTAAATAAGTTTTTGACAAGTTCGAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAA
* *
29920632 GTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTT
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
29920681 AATTCAGTGA
Statistics
Matches: 100, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 100 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.25
Consensus pattern (62 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAA
Found at i:29920901 original size:336 final size:336
Alignment explanation
Indices: 29919956--29921016 Score: 1439
Period size: 336 Copynumber: 3.2 Consensus size: 336
29919946 TTAAAATGTC
* * *
29919956 CGAAAGTTCGTCTAAGAACAAGGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGA-
1 CGAAAGTTCGTCCAAGAACAA-GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAGAGAC
* * * * *
29920020 CAAAAGCATT-TTT-CAAAATAACAAACTATTTAGACCAAATGATGCGATTTCCCGGGCAAGGAA
65 CAAAA-C-TTGTTTACAAAATGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGAA
*** ** * *
29920083 TGTTTGGAAAACAGCTCGAAGGAATGGATAGTCATGAATACTTTCTGGAACCGAAGTTATAAAA-
128 TGTTCAAAAAATTGCTC-AA-GAATGGATA-TCTTGAATACTTTCAGGAACCGAAGTTATAAAAG
*
29920147 AAATCATAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAAAAATTCTTACAT
190 AAATCATAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACAT
* *
29920212 AAATAAGTTTTTGACAAGTTCAGAAATTTGTCCAAGAACTAAGAGAGAAATAATACTCACGTAAA
255 AAATAAGTTTTTGACAAGTTCAGAAATTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAA
*
29920277 TAAGTTTTTGCCAAGTT
320 TAAGTTTTTGACAAGTT
* * * * *
29920294 CGGAAGTTCGTCC----A-AAGAGAGAACCAATTCACACGTAAATAAG-TTTTAATTCTGCGACC
1 CGAAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAGAGACC
* *
29920353 AAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCCATTTCTCGAGCATGGAATGT
66 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGAATGT
29920418 TCAAAAAATTGCTCAAAGGAATGGATAATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAA
131 TCAAAAAATTGCTC-AA-GAATGGAT-ATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAA
* *
29920483 TCATAAAAGTTTGATAAGTTCAGATGTTCGTCCAAGAACCAAGAGTGAAACAATTCTTACATAAA
193 TCATAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAA
*
29920548 TAAGTTTTTGACAAGTTC-GAAAGTTCGTCCAAGAACTAAGAGAGAAACAATACCCACGTAAATA
258 TAAGTTTTTGACAAGTTCAGAAA-TTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATA
29920612 AGTTTTTGACAAGTT
322 AGTTTTTGACAAGTT
* * *
29920627 CGAAAGTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGTGAC
1 CGAAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAGAGAC
*
29920692 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATTATGCGATTTCTCGACCATGGAATG
65 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGAATG
*
29920757 TTCAAAAAATTGCTC-A-AATGGATCATCTTGAATACTTTCAGGAACGGAAGTTATAAAAGAAAT
130 TTCAAAAAATTGCTCAAGAATGGAT-ATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAAT
* * * * * *
29920820 CGA-AAAAGTTTGACAAGGTCGGATGTTCGTCCAAGAACCGAGAGAGAAACAATACTCACGTAAA
194 C-ATAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAA
* * * * * * * *
29920884 TATGTTTTTGTCAAGTTCGGAAATTCGTCCAAAAACCAAGAGAGAACCAATTCTCACATAAATAA
258 TAAGTTTTTGACAAGTTCAGAAATTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATAA
29920949 GTTTTTGACAAGTT
323 GTTTTTGACAAGTT
* * *
29920963 TGAAAGTTTGTGCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 CGAAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
29921017 GACAAGTTCG
Statistics
Matches: 647, Mismatches: 61, Indels: 32
0.87 0.08 0.04
Matches are distributed among these distances:
330 2 0.00
331 15 0.02
332 130 0.20
333 149 0.23
334 1 0.00
336 214 0.33
337 6 0.01
338 12 0.02
339 28 0.04
340 90 0.14
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.27
Consensus pattern (336 bp):
CGAAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAGAGACC
AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGCATGGAATGT
TCAAAAAATTGCTCAAGAATGGATATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCA
TAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAA
GTTTTTGACAAGTTCAGAAATTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATAAGTT
TTTGACAAGTT
Found at i:29920940 original size:62 final size:62
Alignment explanation
Indices: 29920828--29921075 Score: 320
Period size: 62 Copynumber: 4.0 Consensus size: 62
29920818 ATCGAAAAAG
* ** * * *
29920828 TTTGACAAGGTCGGATGTTCGTCCAAGAACCGAGAGAGAAACAATACTCACGTAAATATGTT
1 TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29920890 TTTGTCAAGTTCGGAAATTCGTCCAAAAACCAAGAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29920952 TTTGACAAGTT-TGAAAGTTTGTGCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAA-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29921014 TTTGACAAGTTCGGAAGTTGGTCCAAGAACCAAGAGTA-AAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAG-AGAAACAATTCTCACGTAAATAAGTT
29921076 ATTAATTAAC
Statistics
Matches: 161, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
61 4 0.02
62 153 0.95
63 4 0.02
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29921313 original size:62 final size:62
Alignment explanation
Indices: 29921230--29921476 Score: 302
Period size: 62 Copynumber: 4.0 Consensus size: 62
29921220 ATCGTAAAAG
** * * * *
29921230 TTTGACAAGTTCGGATTTTCGTCCTAGAACCGAGAGAGAAAAAATACTTACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
* * * * **
29921292 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGGGAAACAATTCTCAGTTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
*
29921354 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC-T-CATGAAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACAT--AAATAAGTT
* * * *
29921416 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
29921477 ATTAATTAAC
Statistics
Matches: 161, Mismatches: 20, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
60 1 0.01
61 16 0.10
62 142 0.88
63 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
Found at i:29921383 original size:402 final size:399
Alignment explanation
Indices: 29920492--29921695 Score: 1736
Period size: 402 Copynumber: 3.0 Consensus size: 399
29920482 ATCATAAAAG
* * * *
29920492 TTTGATAAGTTCAGATGTTCGTCCAAGAACCAAGAGTGAAACAATTCTTACATAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* * * *
29920557 GACAAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATACCCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
* * * * *
29920622 AAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT--
131 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-AAACAATTCTCACGTAACTAAGTTATTAATTAA
* * *
29920685 CAGTGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATTATGCGATTTCTCGACCA
195 CAGT--CCAAAACTTGTTTACAAAATGACAAACTATTT-CACCAAATAATGCGATTTCTCGAGCA
*** * * * * *
29920750 TGGAATGTTCAAAAAATTGCT-CA--AATGGATCATCTTGAATACTTTCAGGAACGGAAGTTATA
257 TGGAATGTTTGGAAATTTGCTAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
* *
29920812 AAAGAAATCGAAAAAGTTTGACAAGGTCGGATGTTCGTCCAAGAACCGAGAGAGAAACAATACTC
322 AAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCGAGAGAGAAACAATACTC
*
29920877 ACGTAAATATGTT
387 ACGTAAATAAGTT
* ** * *
29920890 TTTGTCAAGTTCGGAAATTCGTCCAAAAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* *
29920955 GACAAGTTTGAAAGTTTGTGCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
*
29921020 AAGTTCGGAAGTTGGTCCAAGAACCAAGAGTAAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCGGAAGTTCGTCCAAGAACCAAGAG-AAAACAATTCTCACGTAACTAAGTTATTAATTAA
* * * *
29921085 CAGTCCAAAACATGTTTACAAAATGAGAAACTATTGTCACCAAATGATGGGATTTCTCGAGCATG
195 CAGTCCAAAACTTGTTTACAAAATGACAAACTATT-TCACCAAATAATGCGATTTCTCGAGCATG
29921150 GAATGTTTGGAAATTTGCTAAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
259 GAATGTTTGGAAATTTGCT-AAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * *
29921215 AAGAAATCGTAAAAGTTTGACAAGTTCGGATTTTCGTCCTAGAACCGAGAGAGAAAAAATACTTA
323 AAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCGAGAGAGAAACAATACTCA
*
29921280 CATAAATAAGTT
388 CGTAAATAAGTT
* * **
29921292 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGGGAAACAATTCTCAGTTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* * *
29921357 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGAAAATAAGTTTTTGAC
66 GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
* *
29921422 AAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAACTAAGTTATTAATTAAC
131 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAACAATTCTCACGTAACTAAGTTATTAATTAAC
*
29921487 AGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTTCTCGAGCATGG
196 AGTCCAAAACTTGTTTACAAAATGACAAACTA-TTTCACCAAATAATGCGATTTCTCGAGCATGG
29921552 AATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTG-AGTTATAA
260 AATGTTTGGAAATTTGCT-AAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-GAAGTTATAA
* * * * * *
29921616 AAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
323 AAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCGAGAGAGAAACAATACTCA
29921681 CGTAAATAAGTT
388 CGTAAATAAGTT
29921693 TTT
1 TTT
29921696 AATTTAAAGA
Statistics
Matches: 720, Mismatches: 76, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
398 238 0.33
399 2 0.00
400 5 0.01
401 222 0.31
402 253 0.35
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (399 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAACAATTCTCACGTAACTAAGTTATTAATTAAC
AGTCCAAAACTTGTTTACAAAATGACAAACTATTTCACCAAATAATGCGATTTCTCGAGCATGGA
ATGTTTGGAAATTTGCTAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
AAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCGAGAGAGAAACAATACTCACGT
AAATAAGTT
Found at i:29921794 original size:216 final size:216
Alignment explanation
Indices: 29921416--29922341 Score: 1089
Period size: 216 Copynumber: 4.3 Consensus size: 216
29921406 AAAATAAGTT
* *
29921416 TTTGACAAGTTC-AGAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAACTAAGTTAT
1 TTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
** * *
29921479 TAA-TTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTTCT
65 TAATTTAA-AGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCT
* * *
29921543 CGAGCATGGAATGTTTGGAAATTTGCTCA-AAGGAATGGATCGTCTTGAATACTTTAAGGAACCT
129 CGAGCATGGAATGTTCGAAAAATTGCT-AGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-
* *
29921607 G-AGTTATAAAAGAACTCGTGAAAG
192 GAAGTTATAAAAGAAATCGTAAAAG
29921631 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
29921696 AATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT-TCC
66 AATTTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCT-C
* * ** * **
29921760 GAGAATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATGCTTTTTGGAACCGAA
130 GAGCATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
29921825 GTTATAAAAGAAATCGTAAAAG
195 GTTATAAAAGAAATCGTAAAAG
* * *
29921847 TTTGACAAGTTCGGATGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * ***
29921910 ATTTTACAGTCAAAAACTTGTTTACAAAATGATAAACTATTTTGACCAAATGATGTTTTTTCTCG
66 AATTTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCTCG
* * * * * * * * **
29921975 AGCACGGGATGTTTGCAAAATCGCTAGAAGGAATGGATCGCCTTAAATACTGTCGGGAACCGAAG
131 AGCATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * *
29922040 GTATAAAATAACTCGTAAAAG
196 TTATAAAAGAAATCGTAAAAG
* * * * * * * *
29922061 TTTCACATGTCCGAAAATTAGTCCAAGAACAAAGAGAGAAGCAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * **
29922126 AATTCAAACTCCAAAACTTGTTTACAAACTCACAAACTATTTAGAACAAATTATTTGATTTC-CT
66 AATTTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCTC-
* * * *
29922190 GAGCATGGACTTTTCAAAAAATTGCTAGAAGGAATAGATCGTCTTGAATACTTTCAA-GAACCGA
130 GAGCATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTT-AAGGAACCGA
*
29922254 AGTTATAAAAGAAATCGAAAAAG
194 AGTTATAAAAGAAATCGTAAAAG
* * * * * *
29922277 TTTGACAAGGTCGGATGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATATGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
29922342 GTCAAGTTCG
Statistics
Matches: 595, Mismatches: 105, Indels: 21
0.83 0.15 0.03
Matches are distributed among these distances:
214 175 0.29
215 43 0.07
216 373 0.63
217 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCTCG
AGCATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
TTATAAAAGAAATCGTAAAAG
Found at i:29922254 original size:430 final size:430
Alignment explanation
Indices: 29921416--29922341 Score: 1246
Period size: 430 Copynumber: 2.1 Consensus size: 430
29921406 AAAATAAGTT
* * *
29921416 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAACTAAGTTATTA
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGA-AACAATTCTCACGTAACTAAGTTTTTA
*
29921481 ATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTTCTCGA
65 ATTAACAGTCAAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTTCTCGA
* * * * * * * *
29921546 GCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTGAGT
130 GCACGGAATGTTTGCAAAATCGCTCAAAGGAATGGATCGCCTTAAATACTGTAAGGAACCTGAGG
* * * * * *
29921611 TATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
195 TATAAAAGAACTCGTAAAAGTTTCACAAGTCCGAAAATTAGTCCAAGAACAAAGAGAGAAACAAT
* * *
29921676 TCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA
260 TCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAATCACAAACTATTTAGA
* * * * *
29921741 CCAAATGATGGGATTTTCCGAGAATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTG
325 ACAAATGATGGGATTTTCCGAGAATGGAATGTTCAAAAAATTGCTAGAAGGAATAGATCATCTTG
* *** *
29921806 AATGCTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAG
390 AATACTTTCAAGAACCGAAGTTATAAAAGAAATCGAAAAAG
*
29921847 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAACTAAGTTTTTAT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAACTAAGTTTTTAA
* * * * **
29921912 TTTACAGTCAAAAACTTGTTTACAAAATGATAAACTATTTTGACCAAATGATGTTTTTTCTCGAG
66 TTAACAGTCAAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTTCTCGAG
* **
29921977 CACGGGATGTTTGCAAAATCGCT-AGAAGGAATGGATCGCCTTAAATACTGTCGGGAACC-GAAG
131 CACGGAATGTTTGCAAAATCGCTCA-AAGGAATGGATCGCCTTAAATACTGTAAGGAACCTG-AG
* * *
29922040 GTATAAAATAACTCGTAAAAGTTTCACATGTCCGAAAATTAGTCCAAGAACAAAGAGAGAAGCAA
194 GTATAAAAGAACTCGTAAAAGTTTCACAAGTCCGAAAATTAGTCCAAGAACAAAGAGAGAAACAA
* * *
29922105 TTCTTACGTAAATAAGTTTTTAATTCAAACTCCAAAACTTGTTTACAAACTCACAAACTATTTAG
259 TTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAATCACAAACTATTTAG
* ** * * * *
29922170 AACAAATTATTTGA-TTTCCTGAGCATGGACTTTTCAAAAAATTGCTAGAAGGAATAGATCGTCT
324 AACAAATGATGGGATTTTCC-GAGAATGGAATGTTCAAAAAATTGCTAGAAGGAATAGATCATCT
29922234 TGAATACTTTCAAGAACCGAAGTTATAAAAGAAATCGAAAAAG
388 TGAATACTTTCAAGAACCGAAGTTATAAAAGAAATCGAAAAAG
* * * * *
29922277 TTTGACAAGGTCGGATGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATATGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAAC-CA-AGAGAAACAATTCTCACGTAACTAAGTTTTT
29922342 GTCAAGTTCG
Statistics
Matches: 431, Mismatches: 59, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
429 7 0.02
430 360 0.84
431 36 0.08
432 28 0.06
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (430 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAACTAAGTTTTTAA
TTAACAGTCAAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTTCTCGAG
CACGGAATGTTTGCAAAATCGCTCAAAGGAATGGATCGCCTTAAATACTGTAAGGAACCTGAGGT
ATAAAAGAACTCGTAAAAGTTTCACAAGTCCGAAAATTAGTCCAAGAACAAAGAGAGAAACAATT
CTCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAATCACAAACTATTTAGAA
CAAATGATGGGATTTTCCGAGAATGGAATGTTCAAAAAATTGCTAGAAGGAATAGATCATCTTGA
ATACTTTCAAGAACCGAAGTTATAAAAGAAATCGAAAAAG
Found at i:29922389 original size:62 final size:62
Alignment explanation
Indices: 29922277--29922524 Score: 320
Period size: 62 Copynumber: 4.0 Consensus size: 62
29922267 ATCGAAAAAG
* ** * * *
29922277 TTTGACAAGGTCGGATGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATATGTT
1 TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29922339 TTTGTCAAGTTCGGAAATTCGTCCAAAAACCAAGAGGGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29922401 TTTGACAAGTT-TGAAAGTTTGTGCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAA-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29922463 TTTGACAAGTTCGGAAGTTGGTCCAAGAACCAAGAGTA-AAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAG-AGAAACAATTCTCACGTAAATAAGTT
29922525 ATTAATTAAC
Statistics
Matches: 161, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
61 4 0.02
62 153 0.95
63 4 0.02
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29922765 original size:62 final size:62
Alignment explanation
Indices: 29922679--29922924 Score: 281
Period size: 62 Copynumber: 4.0 Consensus size: 62
29922669 ATCGTAAAAG
** * * * * *
29922679 TTTT-ACAAGTTCGGATTTTTGTCCAAGAATCGAGAGAGAAAAAATACTTGCGTAAATAAGT
1 TTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTGCGTAAATAAGT
* * *
29922740 TTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGGGAAACAATTC-T-CAGTTAAATAAG-
1 TTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTGC-G-TAAATAAGT
*
29922801 TTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGC--AAATAAGT
1 TTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT--TGCGTAAATAAGT
** *
29922863 TTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAACTAAGT
1 TTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTGCGTAAATAAGT
29922924 T
1 T
29922925 ATTAATTAAC
Statistics
Matches: 161, Mismatches: 14, Indels: 20
0.83 0.07 0.10
Matches are distributed among these distances:
59 1 0.01
60 1 0.01
61 76 0.47
62 81 0.50
64 1 0.01
65 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (62 bp):
TTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTGCGTAAATAAGT
Found at i:29922822 original size:61 final size:62
Alignment explanation
Indices: 29922730--29922924 Score: 306
Period size: 61 Copynumber: 3.2 Consensus size: 62
29922720 AAATACTTGC
* *
29922730 GTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGGGAAACAATTCTCA-
1 GTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAT
29922791 GTTAAATAAG-TTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAT
1 G-TAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAT
* * *
29922853 GCAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCAC
1 GTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAT
*
29922914 GTAACTAAGTT
1 GTAAATAAGTT
29922925 ATTAATTAAC
Statistics
Matches: 124, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
61 77 0.62
62 47 0.38
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (62 bp):
GTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAT
Found at i:29923028 original size:400 final size:399
Alignment explanation
Indices: 29922081--29923143 Score: 1474
Period size: 402 Copynumber: 2.6 Consensus size: 399
29922071 CCGAAAATTA
* * * * *
29922081 GTCCAAGAACAAAGAGAGAAGCAATTCTTACGTAAATAAGTTTTTAATTCAA-ACTCCAAAACTT
1 GTCCAAGAACCAAGAGAGAA-CAATTCTCACGTAACTAAGTTATTAATT-AACAGTCCAAAACTT
* * ** * * * * **
29922145 GTTTACAAACTCACAAACTATTTAGAACAAATTATTTGATTTC-CTGAGCATGGACT-TTTCAAA
64 GTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTC-GAGCATGGAATGTTT-GGA
* * * *
29922208 AAATTGCTAGAAGGAATAGATCGTCTTGAATACTTTCAA-GAACCGAAGTTATAAAAGAAATCGA
127 AATTTGCTA-AAGGAATGGATCGTCTTGAATA-TTTTAAGGAACCGAAGTTATAAAAGAAATCGT
* *
29922272 AAAAGTTTGACAAGGTCGGATGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATATG
190 AAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC-AAGAGAGAAACAATACTCACGTAAATAAG
* *
29922337 TTTTTGTCAAGTTCGGAAATTCGTCCAAAAACCAAGAGGGAACCAATTCTCACGTAAATAAGTTT
254 TTTTTGACAAGTTCGGAAATTCGTCCAAAAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTT
* * *
29922402 TTGACAAGTTTGAAAGTTTGTGCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
319 TTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAGTTTTTG
*
29922467 ACAAGTTCGGAAGTTG
384 ACAAGTTCGGAAGTTC
* *
29922483 GTCCAAGAACCAAGAGTAAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACATG
1 GTCCAAGAACCAAGAG-AGAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTG
* * *
29922548 TTTACAAAATGAGAAACTATTGTCACCAAATGATGGGATTTCTCGAGCATGGAATGTTTGGAAAT
65 TTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAAT
29922613 TTGCTAAAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAA
130 TTGCT-AAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAA
* * * * * **
29922678 GTTTTACAAGTTCGGATTTTTGTCCAAGAATCGAGAGAGAAAAAATACTTGCGTAAATAAGTTTT
194 GTTTGACAAGTTCGGATGTTCGTCCAAGAA-CAAGAGAGAAACAATACTCACGTAAATAAGTTTT
* ** *
29922743 TGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGGGAAACAATTCTCA-GTTAAATAAG-TTTTG
258 TGACAAGTTCGGAAATTCGTCCAAAAACCAAGAGGGAAACAATTCTCACG-TAAATAAGTTTTTG
* *
29922806 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGCAAATAAGTTTTTGACA
322 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAGTTTTTGACA
29922871 AGTTCGGAAGTTC
387 AGTTCGGAAGTTC
29922884 GTCCAAGAACCAAGAGAGAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGT
1 GTCCAAGAACCAAGAGAGAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGT
29922949 TTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATT
66 TTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATT
* * * *
29923014 TGCTCAAAGGAATGGATTGTCTTGAATACTTTAAGGAACCTG-AGTTATAAAAGAACTCGTGAAA
131 TGCT-AAAGGAATGGATCGTCTTGAATATTTTAAGGAACC-GAAGTTATAAAAGAAATCGTAAAA
* * * *
29923078 GTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
194 GTTTGACAAGTTCGGATGTTCGTCCAAGAA-CAAGAGAGAAACAATACTCACGTAAATAAGTTTT
29923143 T
258 T
29923144 AATTTAAAGA
Statistics
Matches: 585, Mismatches: 67, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
400 220 0.38
401 102 0.17
402 254 0.43
403 9 0.02
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (399 bp):
GTCCAAGAACCAAGAGAGAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGT
TTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATT
TGCTAAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGT
TTGACAAGTTCGGATGTTCGTCCAAGAACAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGA
CAAGTTCGGAAATTCGTCCAAAAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTGACAA
GTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAGTTTTTGACAAGTT
CGGAAGTTC
Found at i:29923242 original size:216 final size:215
Alignment explanation
Indices: 29922864--29923790 Score: 1050
Period size: 216 Copynumber: 4.3 Consensus size: 215
29922854 CAAATAAGTT
* * *
29922864 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
**
29922928 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCG
66 AATTAA-AGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTCG
* * * *
29922993 AGCATGGAATGTTTGGAAATTTGCTCA-AAGGAATGGATTGTCTTGAATACTTTAAGGAACCTG-
130 AGCATGGAATGTTCGAAAAATTGCT-AGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-GA
* *
29923056 AGTTATAAAAGAACTCGTGAAAG
193 AGTTATAAAAGAAATCGTAAAAG
*
29923079 TTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
29923144 AATTTAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGGGATTT-TCC
66 AA-TTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCT-C
* * * ** * **
29923208 GAGCTTGGAATGTCCGAAAAATTTCTAGAAGGAATGGATTATCTTGAGTACTTTTTGGAACCGAA
129 GAGCATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
29923273 GTTATAAAAGAAATAGTAAAAG
194 GTTATAAAAGAAATCGTAAAAG
* *
29923295 TTTGACAAGTTCAGATA-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTT
1 TTTGACAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * ** * *
29923359 TATTTTACAGTCCAAAACTTGTTTACAAAATGATGAACTATTTTGACCGAAA-GATGTCATTTCT
65 TA-ATTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACC-AAATGATGTGATTTCT
* * * * * * * * *
29923423 CGAGCACAGG-ATGTTTGGAAAATCGCTCGAAGGAATGGATCGTCTTAAAAAATTTAGGGAACCG
128 CGAGCA-TGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG
*
29923487 AAGTTATAAAAGAACTCGTAAAAG
192 AAGTTATAAAAGAAATCGTAAAAG
* * * * * **
29923511 TTTCACATGTCCGGAAA-TTAGTCCAAGAA-CAGAGAGAGAAGCAATTCTTGCGTAAATAAGTTT
1 TTTGACAAGTTC-GAAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * *
29923574 TTAATTCAAGCTCCAAAACTTGTTTACAAACTGACAAACTATTTAGAACAAATTATTTGATTTC-
64 TTAATTAAAG-TCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCT
* * * *
29923638 CTGAGCATGGACTGTTCAAAAAATTGCTGGAAGGAATAGATCGTCTTGAATACTTTCAA-GAACC
128 C-GAGCATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTT-AAGGAACC
*
29923702 GAAGTTATAAAAGAAATCGCAAAAG
191 GAAGTTATAAAAGAAATCGTAAAAG
* * * * * * *
29923727 TTTGACAAGGTCGGATGTTCATCCAAGAACTAAGAGAGAAACAATACTCACGT-AATATGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
29923791 GACAAGTTCG
Statistics
Matches: 593, Mismatches: 101, Indels: 36
0.81 0.14 0.05
Matches are distributed among these distances:
215 63 0.11
216 515 0.87
217 15 0.03
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (215 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGA
GCATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
TATAAAAGAAATCGTAAAAG
Found at i:29923705 original size:432 final size:432
Alignment explanation
Indices: 29922864--29923790 Score: 1217
Period size: 432 Copynumber: 2.2 Consensus size: 432
29922854 CAAATAAGTT
*
29922864 TTTGACAAGTTCGGA-AGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAACTAAGTTAT
1 TTTGACAAGTTCGGATA-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTT
*
29922927 TAATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTC
65 TAATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTCATTTCTC
* * * * * * *
29922992 GAGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATTGTCTTGAATACTTTAAGGAACCTGA
130 GAGCAAGGAATGTTTGGAAAATCGCTCAAAGGAATGGATCGTCTTAAAAAATTTAAGGAACCTGA
* * * *
29923057 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACA
195 GTTATAAAAGAACTCGTAAAAGTTTCACAAGTCCGAAAGTTAGTCCAACAACCAAGAGAGAAACA
*
29923122 ATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTA
260 ATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
* * * * * *
29923187 GACCAAATGATGGGATTTTCCGAGCTTGGAATGTCCGAAAAATTTCTAGAAGGAATGGATTATCT
325 GAACAAATGATGGGATTTTCCGAGCATGGAATGTCCAAAAAATTGCTAGAAGGAATAGATCATCT
* *** *
29923252 TGAGTACTTTTTGGAACCGAAGTTATAAAAGAAATAGTAAAAG
390 TGAATACTTTCAAGAACCGAAGTTATAAAAGAAATAGCAAAAG
*
29923295 TTTGACAAGTTCAGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
* * ** *
29923360 ATTTTACAGTCCAAAACTTGTTTACAAAATGATGAACTATTTTGACCGAAA-GATGTCATTTCTC
66 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACC-AAATGATGTCATTTCTC
* *
29923424 GAGCACAGG-ATGTTTGGAAAATCGCTCGAAGGAATGGATCGTCTTAAAAAATTTAGGGAACC-G
130 GAGCA-AGGAATGTTTGGAAAATCGCTCAAAGGAATGGATCGTCTTAAAAAATTTAAGGAACCTG
* *
29923487 AAGTTATAAAAGAACTCGTAAAAGTTTCACATGTCCGGAAA-TTAGTCCAAGAA-CAGAGAGAGA
194 -AGTTATAAAAGAACTCGTAAAAGTTTCACAAGTCC-GAAAGTTAGTCCAACAACCA-AGAGAGA
* ** * * *
29923550 AGCAATTCTTGCGTAAATAAGTTTTTAA-TTCAAGCTCCAAAACTTGTTTACAAACTGACAAACT
256 AACAATTCTCACGTAAATAAGTTTTTAATTTAAAG-ACCAAAACTTGTTTACAAAATGACAAACT
* ** * * *
29923614 ATTTAGAACAAATTATTTGA-TTTCCTGAGCATGGACTGTTCAAAAAATTGCTGGAAGGAATAGA
320 ATTTAGAACAAATGATGGGATTTTCC-GAGCATGGAATGTCCAAAAAATTGCTAGAAGGAATAGA
* *
29923678 TCGTCTTGAATACTTTCAAGAACCGAAGTTATAAAAGAAATCGCAAAAG
384 TCATCTTGAATACTTTCAAGAACCGAAGTTATAAAAGAAATAGCAAAAG
* * * * * *
29923727 TTTGACAAGGTCGGATGTTCATCCAAGAACTAAGAGAGAAACAATACTCACGTAA-TATGTTTTT
1 TTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
29923791 GACAAGTTCG
Statistics
Matches: 431, Mismatches: 56, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
431 56 0.13
432 366 0.85
433 9 0.02
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (432 bp):
TTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTCATTTCTCG
AGCAAGGAATGTTTGGAAAATCGCTCAAAGGAATGGATCGTCTTAAAAAATTTAAGGAACCTGAG
TTATAAAAGAACTCGTAAAAGTTTCACAAGTCCGAAAGTTAGTCCAACAACCAAGAGAGAAACAA
TTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
AACAAATGATGGGATTTTCCGAGCATGGAATGTCCAAAAAATTGCTAGAAGGAATAGATCATCTT
GAATACTTTCAAGAACCGAAGTTATAAAAGAAATAGCAAAAG
Found at i:29923886 original size:62 final size:62
Alignment explanation
Indices: 29923727--29923976 Score: 331
Period size: 62 Copynumber: 4.0 Consensus size: 62
29923717 ATCGCAAAAG
* * * * * *
29923727 TTTGACAAGGTCGGATGTTCATCCAAGAACTAAGAGAGAAACAATACTCACGT-AATATGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29923788 TTTGACAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** * * *
29923850 TTTGACAATTTCAAAAGTTCGTGCAAGAACCGAGAGAGAAAAAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29923912 TTTGACAAGTACGGAAGTTGGTCCAAGAACCAAGAGAGAAACAATCCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29923974 TTT
1 TTT
29923977 AATTAACAGT
Statistics
Matches: 162, Mismatches: 26, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
61 46 0.28
62 116 0.72
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29924254 original size:62 final size:62
Alignment explanation
Indices: 29924128--29924253 Score: 209
Period size: 61 Copynumber: 2.0 Consensus size: 62
29924118 CTCATGAAAG
* *
29924128 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGCAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTTCTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29924190 TTTGACAAGTTCGGAAG-TTCTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTTCTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29924251 TTT
1 TTT
29924254 TATTTAAAGA
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
61 44 0.73
62 16 0.27
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTTCTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29924352 original size:277 final size:277
Alignment explanation
Indices: 29923850--29924467 Score: 816
Period size: 277 Copynumber: 2.2 Consensus size: 277
29923840 TAAATAAGTT
* * * * *
29923850 TTTGACAATTTCAAAAGTTCGTGCAAGAACCGAGAGAGAAAAAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTT
* *
29923915 GACAAGTACGGAAGTTGGTCCAAGAACCAAGAGAGAAACAATCCTCACGTAACTAAGTTTTTAAT
65 GACAAGTACGGAAGTTGCTCCAAGAACCAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTAAT
* * * * * *
29923980 TAACAGTCCACAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGC
130 TAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATAATGGGATTTCTCGAGA
* * * **
29924045 ATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTA
195 ATGGAATGTTCGAAAATTTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACAGAAGTTA
*
29924110 TAAAA-AAACTCATGAAAG
260 TAAAAGAAA-TCATAAAAG
*
29924128 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGCAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTT
* * * *
29924193 GACAAGTTCGGAAGTT-CTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTAT
65 GACAAGTACGGAAGTTGCTCCAAGAACCAAGAGAGAAACAATCCTCACGTAAATAAG-TTTTTAA
* *
29924257 TTAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGGGATTTTTCGAG
129 TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATAATGGGATTTCTCGAG
* * * * **
29924321 AATGGAATGTTCGAAAAATTT-CAT-GAAGGAATGGGTTATCTTGAATGCTTTTTGGAACAGAAG
194 AATGGAATGTTCG-AAAATTTGC-TCAAAGGAATGGATCATCTTGAATACTTTAAGGAACAGAAG
*
29924384 TTATAAAAGAAATCGTAAAAG
257 TTATAAAAGAAATCATAAAAG
* * *
29924405 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGA-AACAATTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTT
29924468 ATTTTACAAT
Statistics
Matches: 298, Mismatches: 38, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
275 25 0.08
277 180 0.60
278 93 0.31
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (277 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTTG
ACAAGTACGGAAGTTGCTCCAAGAACCAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTAATT
AACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATAATGGGATTTCTCGAGAA
TGGAATGTTCGAAAATTTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACAGAAGTTAT
AAAAGAAATCATAAAAG
Found at i:29924600 original size:214 final size:212
Alignment explanation
Indices: 29924190--29924899 Score: 725
Period size: 216 Copynumber: 3.3 Consensus size: 212
29924180 TAAATAAGTT
*
29924190 TTTGACAAGTTCGGAAGTTC-TCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAAGTTTTT
* * **
29924254 -TATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGGGATTTT-T
64 AT-TTTAAAGTCCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATAAT-GTTTTTTCT
* * * * * * * *
29924317 CGAGAATGGAATGTTCGAAAAATTTCAT-GAAGGAATGGGTTATCTTGAATGCTTTTTGGAACAG
127 CGAGCA-GGGATGTTCGAAAAATTGC-TCGAAGGAATGGATCATCTTGAATAC-TTTAGGAACCG
29924381 AAGTTATAAAAGAAATCGTAAAAG
189 AAGTTATAAAAGAAATCGTAAAAG
* *
29924405 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAACTAAGTTTTTAT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTTTTTAT
* * *
29924470 TTTACAA-TCCAAAACTTGTTTACAAAATGATAAACTATTTTGACCAAATGATGTTTTTTCTCGA
66 TTTA-AAGTCCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATAATGTTTTTTCTCGA
* * ** *
29924534 GCACGGGATGTTTGCAAAATTGCTCGAAGGAATGGATCGCCTTAAATACTTTAGGGAACCGAAGT
130 GCA-GGGATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTA-GGAACCGAAGT
*
29924599 TATAAAAGAACTCGTAAAAG
193 TATAAAAGAAATCGTAAAAG
* * * * * * *
29924619 TTTCACATGTTCGAAAATTAGTCCAAGAACAAAGAGAGAACCAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-AA-CAATTCTCACGTAAATAAGTTTTT
* * * * * * * * *
29924684 AATTCAAATTCCAAAAGTTGTTTACAAACTCAAAAACTATTTAGAACAAATTAT-TTGATTTC-C
64 ATTTTAAAGTCCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATAATGTT-TTTTCTC
* * * * * *
29924747 TGAGCATGGACTATTCAAAAAATTGCTCGAATGAATAGATCATCTTGAATACTTTCAAGAACCGA
128 -GAGCAGGGA-TGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTT-AGGAACCGA
*
29924812 AGTTATAAAAGAAATCGCAAAAG
190 AGTTATAAAAGAAATCGTAAAAG
* * * * *
29924835 TTTGACAAGGTT-GGATGTTCATCCAAGAACTAAGAAAGAAACAATACTCACGTAAATATGTTTT
1 TTTGACAA-GTTCGGAAGTTCGTCCAAGAACCAAG--AGAAACAATTCTCACGTAAATAAGTTTT
29924899 T
63 T
29924900 GACAAGTTCG
Statistics
Matches: 412, Mismatches: 67, Indels: 31
0.81 0.13 0.06
Matches are distributed among these distances:
213 9 0.02
214 173 0.42
215 33 0.08
216 188 0.46
217 6 0.01
218 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (212 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTTTTTAT
TTTAAAGTCCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATAATGTTTTTTCTCGAG
CAGGGATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAGGAACCGAAGTTAT
AAAAGAAATCGTAAAAG
Found at i:29924922 original size:62 final size:62
Alignment explanation
Indices: 29924835--29925082 Score: 345
Period size: 62 Copynumber: 4.0 Consensus size: 62
29924825 ATCGCAAAAG
* * * * * *
29924835 TTTGACAAGGTT-GGATGTTCATCCAAGAACTAAGAAAGAAACAATACTCACGTAAATATGTT
1 TTTGACAA-GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29924897 TTTGACAAGTTCGGAAGTTCGTCCAAAAACTAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29924959 GTTGACAAGTTCGAAAGTTCGTGCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29925021 TTTGACAAGTTCGGAAGTTGGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29925083 ATTAATTAAC
Statistics
Matches: 165, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
61 3 0.02
62 162 0.98
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.25
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29925313 original size:62 final size:62
Alignment explanation
Indices: 29925237--29925484 Score: 361
Period size: 62 Copynumber: 4.0 Consensus size: 62
29925227 ATCGTAAAAG
* * * * *
29925237 TTTGACAAGTTCGGATTTTCGTCCATGAACCGAGAGAGAAATAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29925299 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGGGAAACAATTCTCACTTAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29925361 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAGCT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29925423 TTTGACAAGCTCGGAGGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29925485 ATTAATTAAC
Statistics
Matches: 166, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 166 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29925390 original size:402 final size:402
Alignment explanation
Indices: 29924639--29925703 Score: 1481
Period size: 402 Copynumber: 2.6 Consensus size: 402
29924629 TCGAAAATTA
* * * * * * *
29924639 GTCCAAGAACAAAGAGAGAACCAATTCTTACGTAAATAAGTTTTTAATTCAA-ATTCCAAAAGTT
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATT-AACAGTCCAAAACTT
* * * ** * * * * * ***
29924703 GTTTACAAACTCAAAAACTATTTAGAACAAATTATTTGATTTC-CTGAGCATGGACTATTCAAAA
65 GTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTTCTC-GAGCATGGAATGTTTGGAA
* * * * * *
29924767 AATTGCTCGAATGAATAGATCATCTTGAATACTTTCAA-GAACCGAAGTTATAAAAGAAATCGCA
129 ATTTGCTCAAAGGAATGGATCGTCTTGAATACTTT-AAGGAACCGAAGTTATAAAAGAAATCGTA
* * * * * *
29924831 AAAGTTTGACAAGGTT-GGATGTTCATCCAAGAACTAAGAAAGAAACAATACTCACGTAAATATG
193 AAAGTTTGACAA-GTTCGGATTTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* *
29924895 TTTTTGACAAGTTCGGAAGTTCGTCCAAAAACTAAGAGAGAACCAATTCTCACGTAAATAAGTTG
257 TTTTTGACAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTG
* * *
29924960 TTGACAAGTTCGAAAGTTCGTGCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTG
322 TTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACACAAATAAGCTTTTG
* *
29925025 ACAAGTTCGGAAGTTG
387 ACAAGCTCGGAAGTTC
*
29925041 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACATG
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTG
* *
29925106 TTTACAAAATGACGAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAAT
66 TTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTTCTCGAGCATGGAATGTTTGGAAAT
*
29925171 TTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATATAAGAAATCGTAAAA
131 TTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAA
* * * *
29925236 GTTTGACAAGTTCGGATTTTCGTCCATGAACCGAGAGAGAAATAATTCTTACGTAAATAAGTTTT
196 GTTTGACAAGTTCGGATTTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
29925301 TGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGGGAAACAATTCTCACTTAAATAAGTTTTTGA
261 TGACAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTGTTGA
* * *
29925366 CAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAGCTTTTGACAA
326 CAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACACAAATAAGCTTTTGACAA
*
29925431 GCTCGGAGGTTC
391 GCTCGGAAGTTC
* *
29925443 GTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCGAAAACTTG
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTG
*
29925508 TTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTACTCGAGCATGGAATGTTTGGAAAT
66 TTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTTCTCGAGCATGGAATGTTTGGAAAT
* * * *
29925573 TTGCTCAAAGGAATGGATCGTCATGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTGAAA
131 TTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAA
* *
29925638 GTTTGACAAGTTCGAAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
196 GTTTGACAAGTTCGGATTTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
29925703 T
261 T
29925704 AATTTAAAGA
Statistics
Matches: 587, Mismatches: 72, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
401 7 0.01
402 579 0.99
403 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (402 bp):
GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTG
TTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTTCTCGAGCATGGAATGTTTGGAAAT
TTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAA
GTTTGACAAGTTCGGATTTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
TGACAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTGTTGA
CAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACACAAATAAGCTTTTGACAA
GCTCGGAAGTTC
Found at i:29925801 original size:216 final size:215
Alignment explanation
Indices: 29925423--29926351 Score: 1082
Period size: 216 Copynumber: 4.3 Consensus size: 215
29925413 CAAATAAGCT
* * * * * *
29925423 TTTGACAAGCTCGGAGGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
29925488 AATTAACAGTCGAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTACTCG
66 AATTAA-AGTCCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGTGATTTCTCG
* * * *
29925553 AGCATGGAATGTTTG-GAAATTTGCTCAAAGGAATGGATCGTCATGAATACTTTAAGGAACCTAA
130 AGCATGGAATGTTCGAAAAATTT-CTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
* *
29925617 GTTATAAAAGAACTCGTGAAAG
194 GTTATAAAAGAAATCGTAAAAG
29925639 TTTGACAAGTTCGAAAT-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCG-AATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
29925703 TAATTTAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGGGATTT-TC
65 TAA-TTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGTGATTTCTC
* ** ** *
29925767 TGAGCATGGAATGTTCGAAAAATTTCTAAAAGGAATGGATTATCTTGAATACTTTTTGGAACCGC
129 -GAGCATGGAATGTTCGAAAAATTTCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
29925832 AGTTATAAAAGAAATCGTAAAAG
193 AGTTATAAAAGAAATCGTAAAAG
* *
29925855 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
29925920 ATTTTACAGTCCAAAACTTGTTTGCAAAATGATAAACTATTTTCACCAAATGATGTGATTTCTCG
66 A-ATTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGTGATTTCTCG
* * * * * * * *
29925985 AGCACGGGATGTTTGGAAAATCGT-TCGAAGGAATGGATCGTCTTAAATACTTTAGGGAACCGAA
130 AGCATGGAATGTTCGAAAAAT-TTCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
29926049 GTTATAAAAGAACTCGTAAAAG
194 GTTATAAAAGAAATCGTAAAAG
* * * * * * * * *
29926071 TTTCACATGTCCGGAA-ATTAGTCTAAGAACAAAGAGAGAAGCAATTCTTACGTAAATAAGTTTT
1 TTTGACAAGTTC-GAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * *
29926135 TAATTCAAGCTCCAAAACTTGTTTACAAATTGACAAACTATTTAGAACAAATTATTTGATTTC-C
65 TAATTAAAG-TCCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGTGATTTCTC
* * * * *
29926199 AGACCATGGACTGTTC-AAAACATTGCTCGAAGGAATAGATCGTCTTGAATACTTTCAA-GAACC
129 -GAGCATGGAATGTTCGAAAA-ATTTCTCAAAGGAATGGATCGTCTTGAATACTTT-AAGGAACC
*
29926262 GAAGTTATAAAAGAAATCGCAAAAG
191 GAAGTTATAAAAGAAATCGTAAAAG
* * * * *
29926287 TTTGACAAGTTCGGATGTTCGTCCAAGAACTAAGAGAGAAACAATACTCAAGTAAATATGTTTTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
29926352 GACAAGTTCG
Statistics
Matches: 599, Mismatches: 99, Indels: 30
0.82 0.14 0.04
Matches are distributed among these distances:
215 14 0.02
216 568 0.95
217 17 0.03
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (215 bp):
TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGTGATTTCTCGA
GCATGGAATGTTCGAAAAATTTCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
TATAAAAGAAATCGTAAAAG
Found at i:29926234 original size:432 final size:432
Alignment explanation
Indices: 29925423--29926351 Score: 1288
Period size: 432 Copynumber: 2.2 Consensus size: 432
29925413 CAAATAAGCT
* * * *
29925423 TTTGACAAGCTCGGAGGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
*
29925488 AATTAACAGTCGAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTACTCG
66 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTACTCG
* * * * *
29925553 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCATGAATACTTTAAGGAACCTAAG
131 AGCACGGAATGTTTGGAAAATCGCTCAAAGGAATGGATCGTCATAAATACTTTAAGGAACCGAAG
* * * * *
29925618 TTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAATTTCGTCCAAGAACCAAGAGAGAAACAA
196 TTATAAAAGAACTCGTAAAAGTTTCACAAGTCCGAAATTTAGTCCAAGAACAAAGAGAGAAACAA
*
29925683 TTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAG
261 TTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
* * * * * * *
29925748 ACCAAATGATGGGATTTTCTGAGCATGGAATGTTCGAAAAATTTCTAAAAGGAATGGATTATCTT
326 AACAAATGATGGGATTTCCAGACCATGGAATGTTCGAAAAATTGCTAAAAGGAATAGATCATCTT
*** * *
29925813 GAATACTTTTTGGAACCGCAGTTATAAAAGAAATCGTAAAAG
391 GAATACTTTCAAGAACCGAAGTTATAAAAGAAATCGCAAAAG
29925855 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
* * * * * *
29925920 ATTTTACAGTCCAAAACTTGTTTGCAAAATGATAAACTATTTTCACCAAATGATGTGATTTCTCG
66 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTACTCG
* * * * *
29925985 AGCACGGGATGTTTGGAAAATCGTTCGAAGGAATGGATCGTCTTAAATACTTTAGGGAACCGAAG
131 AGCACGGAATGTTTGGAAAATCGCTCAAAGGAATGGATCGTCATAAATACTTTAAGGAACCGAAG
* * *
29926050 TTATAAAAGAACTCGTAAAAGTTTCACATGTCCGGAAA-TTAGTCTAAGAACAAAGAGAGAAGCA
196 TTATAAAAGAACTCGTAAAAGTTTCACAAGTCC-GAAATTTAGTCCAAGAACAAAGAGAGAAACA
* * * *
29926114 ATTCTTACGTAAATAAGTTTTTAA-TTCAAGCTCCAAAACTTGTTTACAAATTGACAAACTATTT
260 ATTCTCACGTAAATAAGTTTTTAATTTAAAG-ACCAAAACTTGTTTACAAAATGACAAACTATTT
* ** * ** *
29926178 AGAACAAATTATTTGATTTCCAGACCATGGACTGTTC-AAAACATTGCTCGAAGGAATAGATCGT
324 AGAACAAATGATGGGATTTCCAGACCATGGAATGTTCGAAAA-ATTGCTAAAAGGAATAGATCAT
29926242 CTTGAATACTTTCAAGAACCGAAGTTATAAAAGAAATCGCAAAAG
388 CTTGAATACTTTCAAGAACCGAAGTTATAAAAGAAATCGCAAAAG
* * * * *
29926287 TTTGACAAGTTCGGATGTTCGTCCAAGAACTAAGAGAGAAACAATACTCAAGTAAATATGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
29926352 GACAAGTTCG
Statistics
Matches: 436, Mismatches: 58, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
431 9 0.02
432 423 0.97
433 4 0.01
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (432 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATAATGTGATTACTCG
AGCACGGAATGTTTGGAAAATCGCTCAAAGGAATGGATCGTCATAAATACTTTAAGGAACCGAAG
TTATAAAAGAACTCGTAAAAGTTTCACAAGTCCGAAATTTAGTCCAAGAACAAAGAGAGAAACAA
TTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
AACAAATGATGGGATTTCCAGACCATGGAATGTTCGAAAAATTGCTAAAAGGAATAGATCATCTT
GAATACTTTCAAGAACCGAAGTTATAAAAGAAATCGCAAAAG
Found at i:29926363 original size:62 final size:62
Alignment explanation
Indices: 29926287--29926534 Score: 388
Period size: 62 Copynumber: 4.0 Consensus size: 62
29926277 ATCGCAAAAG
* * * * *
29926287 TTTGACAAGTTCGGATGTTCGTCCAAGAACTAAGAGAGAAACAATACTCAAGTAAATATGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29926349 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29926411 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCCCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29926473 TTTGACAAGTTCGGAAGTTCGTTCAAGAGCCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29926535 ATTAATTAAC
Statistics
Matches: 171, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 171 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29926965 original size:216 final size:216
Alignment explanation
Indices: 29926487--29926945 Score: 627
Period size: 216 Copynumber: 2.1 Consensus size: 216
29926477 ACAAGTTCGG
** * * * * *
29926487 AAGTTCGTTCAAGAGCCAAGAGAGAAACAATTCTCACGTAACTAAGT-TATTAATT-AACAGTCC
1 AAGTTCGCCCAAGAACCAAGAGAGAAACAAGTCTCACGTAAATAAGTGT-TTAATTCAA-GGACC
* * * *
29926550 AAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAGCATGGAATGT
64 AAAACTTGTTTACAAAAAGACAAACTATTTACACCAAATGATGGGATTTCTCGAGCATGGAACGT
*** * *
29926615 TTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAC
129 TAAAAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAA
* *
29926680 TCATGAAAGTTTAACAAGTTCAA
194 TCATAAAAGTTTAACAAGGTCAA
*
29926703 AAGTTCGCCCACGAACCAAGAGAGAAACAAGTCTCACGTAAATAAGTGTTTAATTCAAGGACCAA
1 AAGTTCGCCCAAGAACCAAGAGAGAAACAAGTCTCACGTAAATAAGTGTTTAATTCAAGGACCAA
* *
29926768 AACTTGTTTACAAAAAGACAAACTATTTAGACCAAATGATGGGATTTTTCGAGCATGGAACGTTC
66 AACTTGTTTACAAAAAGACAAACTATTTACACCAAATGATGGGATTTCTCGAGCATGGAACGTT-
29926833 AAAAAATTT-CTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAAT
130 AAAAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAAT
* *
29926897 CGTAAAAGTTTGACAAGGTCAA
195 CATAAAAGTTTAACAAGGTCAA
** * *
29926919 ATTTTCGTCCAAGAACCGAGAGAGAAA
1 AAGTTCGCCCAAGAACCAAGAGAGAAA
29926946 ATTTTTTTAC
Statistics
Matches: 212, Mismatches: 28, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
216 203 0.96
217 9 0.04
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (216 bp):
AAGTTCGCCCAAGAACCAAGAGAGAAACAAGTCTCACGTAAATAAGTGTTTAATTCAAGGACCAA
AACTTGTTTACAAAAAGACAAACTATTTACACCAAATGATGGGATTTCTCGAGCATGGAACGTTA
AAAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATC
ATAAAAGTTTAACAAGGTCAA
Found at i:29927059 original size:61 final size:62
Alignment explanation
Indices: 29926922--29927150 Score: 286
Period size: 61 Copynumber: 3.7 Consensus size: 62
29926912 AGGTCAAATT
* * * * * *
29926922 TTCGTCCAAGAACCGAGAGAGAAA-ATTTTTTTACGTAAATAAGTTTTTGACAAGTTCGGATG
1 TTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAG
* * * *
29926984 TTTGTCCAAGAACCAAGAGGGAAACAATTCTCA-GCTAAATAAG-TTTTGAAAAGTTTGGAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCATG-TAAATAAGTTTTTGACAAGTTCGGAAG
* *
29927045 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGGAAATAAGTTTTTGACAAGTTCGAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAG
* *
29927107 TTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAACTAAGTT
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
29927151 ATTAATTAAC
Statistics
Matches: 145, Mismatches: 18, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
61 74 0.51
62 70 0.48
63 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.27
Consensus pattern (62 bp):
TTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAG
Found at i:29927356 original size:616 final size:618
Alignment explanation
Indices: 29925855--29927581 Score: 2558
Period size: 618 Copynumber: 2.8 Consensus size: 618
29925845 ATCGTAAAAG
* *
29925855 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
* * * *
29925920 ATTTTACAGTCCAAAACTTGTTTGCAAAATGATAAACTATTTTCACCAAATGATGTGATTTCTCG
66 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCG
* * * * * * * * *
29925985 AGCACGGGATGTTTGGAAAATCGTTCGAAGGAATGGATCGTCTTAAATACTTTAGGGAACCGAAG
131 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAG
* * * * * * *
29926050 TTATAAAAGAACTCGTAAAAGTTTCACATGTCCGGAAA-TTAGTCTAAGAACAAAGAGAGAAGCA
196 TTATAAAAGAACTCGTGAAAGTTTAACAAGTTC-GAAAGTTCGTCCAAGAACAAAGAGAGAAACA
* ** *
29926114 ATTCTTACGTAAATAAGTTTTTAATTCAAGCTCCAAAACTTGTTTACAAATTGACAAACTATTTA
260 ATTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTA
* * ** * * * * * *
29926179 GAACAAATTATTTGA-TTTCCAGACCATGG-ACTGTTCAAAACATTGCTCGAAGGAATAGATCGT
325 GACCAAATGATGGGATTTTTC-GAGCATGGAAC-GTTCAAAAAATTTCTCAAAGGAATGGATCGT
* *
29926242 CTTGAATACTTTCAA-GAACCGAAGTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGGATGTT
388 CTTGAATACTTT-AAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCAGATGTT
* *
29926306 CGTCCAAGAACTAAGAGAGAAACAATACTCAAGTAAATATGTTTTTGACAAGTTCGGAAGTTCGT
452 CGTCCAAGAACCAAGAGAGAAACAATACTCAAGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGT
* *
29926371 CCAAGAACCAAGAGAGAACCAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCA
517 CCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAAAAGTTCGGAAGTTCATCCA
*
29926436 AGAACCAAGAGAGAAACAATTCCCACGTAAATAAGTT
582 AGAACCAAGAGAGAAACAATTCCCACGGAAATAAGTT
* *
29926473 TTTGACAAGTTCGGAAGTTCGTTCAAGAGCCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
29926538 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCG
66 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCG
29926603 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAG
131 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAG
* * * * *
29926668 TTATAAAAGAACTCATGAAAGTTTAACAAGTTCAAAAGTTCGCCCACGAACCAAGAGAGAAACAA
196 TTATAAAAGAACTCGTGAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
* * *
29926733 GTCTCACGTAAATAAGTGTTTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAG
261 TTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
29926798 ACCAAATGATGGGATTTTTCGAGCATGGAACGTTCAAAAAATTTCTCAAAGGAATGGATCGTCTT
326 ACCAAATGATGGGATTTTTCGAGCATGGAACGTTCAAAAAATTTCTCAAAGGAATGGATCGTCTT
* * *
29926863 GAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGGTCAAATTTTCGTC
391 GAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCAGATGTTCGTC
* * ** * * * *
29926928 CAAGAACCGAGAGAGAAA-ATTTTTTTACGTAAATAAGTTTTTGACAAGTTCGGATGTTTGTCCA
456 CAAGAACCAAGAGAGAAACA-ATACTCAAGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCA
* * *
29926992 AGAACCAAGAGGGAAACAATTCTCA-GCTAAATAAG-TTTTGAAAAGTTTGGAAGTTCGTCCAAG
520 AGAACCAAGAGAGAAACAATTCTCATG-TAAATAAGTTTTTGAAAAGTTCGGAAGTTCATCCAAG
* *
29927055 AACCAAGAGAGAAACAATTCTCATGGAAATAAGTT
584 AACCAAGAGAGAAACAATTCCCACGGAAATAAGTT
*
29927090 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
29927154 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCG
66 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCG
29927219 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAG
131 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAG
* *
29927284 TTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACGAAGAGAGAAACAA
196 TTATAAAAGAACTCGTGAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
* *
29927349 TTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
261 TTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
* * **
29927414 ACCAAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTTCT-AGAAGGAATGGATTATCT
326 ACCAAATGATGGGATTTTTCGAGCATGGAACGTTCAAAAAATTTCTCA-AAGGAATGGATCGTCT
* **
29927478 TGAATGCTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCAGATGTTCGT
390 TGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCAGATGTTCGT
* * *
29927543 CCAAGAACC-A-AGAGAAACAATTCTCACGTAACTAAGTTT
455 CCAAGAACCAAGAGAGAAACAATACTCAAGTAAATAAGTTT
29927582 GTATTTTACA
Statistics
Matches: 1004, Mismatches: 97, Indels: 20
0.90 0.09 0.02
Matches are distributed among these distances:
614 23 0.02
615 3 0.00
616 401 0.40
617 99 0.10
618 472 0.47
619 6 0.01
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (618 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCG
AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAG
TTATAAAAGAACTCGTGAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
TTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
ACCAAATGATGGGATTTTTCGAGCATGGAACGTTCAAAAAATTTCTCAAAGGAATGGATCGTCTT
GAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCAGATGTTCGTC
CAAGAACCAAGAGAGAAACAATACTCAAGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAA
GAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAAAAGTTCGGAAGTTCATCCAAGAA
CCAAGAGAGAAACAATTCCCACGGAAATAAGTT
Found at i:29927468 original size:216 final size:214
Alignment explanation
Indices: 29927090--29928015 Score: 1058
Period size: 216 Copynumber: 4.3 Consensus size: 214
29927080 GAAATAAGTT
* *
29927090 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
** * *
29927154 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCG
65 AATTAA-AGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCG
* * * *
29927219 AGCATGGAATGTTTGGAAATTTGCTCA-AAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAA
129 AGCATGGAATGTTCGAAAAATTGCT-AGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
* *
29927283 GTTATAAAAGAACTCGTGAAAG
193 GTTATAAAAGAAATCGTAAAAG
29927305 TTTGACAAGTTCGAAAGTTCGTCCAAGAACGAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
29927370 AATTGAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCG
65 AATT-AAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCG
* ** * **
29927435 AGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATGCTTTTTGGAACCGAAG
129 AGCATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
29927500 TTATAAAAGAAATCGTAAAAG
194 TTATAAAAGAAATCGTAAAAG
* * * *
29927521 TTTGACAAGTTC-AGATGTTCGTCCAAGAACCA-AGAGAAACAATTCTCACGTAACTAAGTTTGT
1 TTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * **
29927584 ATTTTACAGTCCAAAACTTGTTTACAAAATGATAAACTATTTTGACCAAATGAT-GTTTTTTCTC
65 A-ATTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTT-TC
* * * * * * * * * *
29927648 GAGCACGGGATGTTTGCAAAATCGCTCGAAGGAATGGATCGCCTTAAATACTTTAGGGAATCGAA
128 GAGCATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
29927713 GTTATAAAAGAACTCGTAAAAG
193 GTTATAAAAGAAATCGTAAAAG
* * * * * * *
29927735 TTTCACATGTCCGAAAATTAGTCCAAGAACAAAGAGAGAAGCAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * * ** *
29927800 AATTCAAACTCTAAAACTTGTTTAGAAACTCACAAACTATTTAGAACAAATTATTTGA-TTTCCT
65 AATT-AAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTC-
* * * * *
29927864 GAGCATGGACTGTTCAAAAAATTGCTGGAAGGAATAGATCGTCTTGAATACTTTCAA-GAACTGA
128 GAGCATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTT-AAGGAACCGA
*
29927928 AGTTATAAAAGAAATCGCAAAAG
192 AGTTATAAAAGAAATCGTAAAAG
* * * * *
29927951 CTTGACAAGGTC-AGATGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATATGTTTT
1 TTTGACAAGTTCGA-AAGTTCGTCCAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTT
29928015 T
64 T
29928016 GACAAGTTCG
Statistics
Matches: 595, Mismatches: 101, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
213 5 0.01
214 171 0.29
215 47 0.08
216 369 0.62
217 3 0.01
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (214 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
ATTAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCGAG
CATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
ATAAAAGAAATCGTAAAAG
Found at i:29927932 original size:430 final size:430
Alignment explanation
Indices: 29927090--29928005 Score: 1253
Period size: 430 Copynumber: 2.1 Consensus size: 430
29927080 GAAATAAGTT
*
29927090 TTTGACAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCAG-ATGTTCGTCCAAGAACCAAGAGA-AACAATTCTCACGTAACTAAGTTATT
29927154 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCG
64 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCG
* * * * * * *
29927219 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAG
129 AGCACGGAATGTTTGCAAAATCGCTCAAAGGAATGGATCGCCTTAAATACTTTAAGGAACCGAAG
* * * * * *
29927284 TTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACGAAGAGAGAAACAA
194 TTATAAAAGAACTCGTAAAAGTTTCACAAGTCCGAAAATTAGTCCAAGAACAAAGAGAGAAACAA
* * *
29927349 TTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
259 TTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAATCACAAACTATTTAG
* * * * * *
29927414 ACCAAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTT
324 AACAAATGATGGGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTAGAAGGAATAGATCATCTT
* *** *
29927479 GAATGCTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAG
389 GAATACTTTCAAGAACCGAAGTTATAAAAGAAATCGCAAAAG
29927521 TTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAACTAAGTT-TGTA
1 TTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAACTAAGTTAT-TA
* * * * **
29927585 TTTTACAGTCCAAAACTTGTTTACAAAATGATAAACTATTTTGACCAAATGATGTTTTTTCTCGA
65 ATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGA
* * * *
29927650 GCACGGGATGTTTGCAAAATCGCTCGAAGGAATGGATCGCCTTAAATACTTTAGGGAATCGAAGT
130 GCACGGAATGTTTGCAAAATCGCTCAAAGGAATGGATCGCCTTAAATACTTTAAGGAACCGAAGT
* *
29927715 TATAAAAGAACTCGTAAAAGTTTCACATGTCCGAAAATTAGTCCAAGAACAAAGAGAGAAGCAAT
195 TATAAAAGAACTCGTAAAAGTTTCACAAGTCCGAAAATTAGTCCAAGAACAAAGAGAGAAACAAT
* * * * *
29927780 TCTTACGTAAATAAGTTTTTAATTCAAACTCTAAAACTTGTTTAGAAACTCACAAACTATTTAGA
260 TCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAATCACAAACTATTTAGA
* ** * * *
29927845 ACAAATTATTTGATTTC-CTGAGCATGGACTGTTCAAAAAATTGCTGGAAGGAATAGATCGTCTT
325 ACAAATGATGGGATTTCTC-GAGCATGGAATGTTCAAAAAATTGCTAGAAGGAATAGATCATCTT
*
29927909 GAATACTTTCAAGAACTGAAGTTATAAAAGAAATCGCAAAAG
389 GAATACTTTCAAGAACCGAAGTTATAAAAGAAATCGCAAAAG
* * * *
29927951 CTTGACAAGGTCAGATGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAA
1 TTTGACAAGTTCAGATGTTCGTCCAAGAAC-CA-AGAGAAACAATTCTCACGTAA
29928006 ATATGTTTTT
Statistics
Matches: 424, Mismatches: 56, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
429 2 0.00
430 366 0.86
431 35 0.08
432 21 0.05
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (430 bp):
TTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAACTAAGTTATTAA
TTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCTCGAG
CACGGAATGTTTGCAAAATCGCTCAAAGGAATGGATCGCCTTAAATACTTTAAGGAACCGAAGTT
ATAAAAGAACTCGTAAAAGTTTCACAAGTCCGAAAATTAGTCCAAGAACAAAGAGAGAAACAATT
CTCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAATCACAAACTATTTAGAA
CAAATGATGGGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTAGAAGGAATAGATCATCTTGA
ATACTTTCAAGAACCGAAGTTATAAAAGAAATCGCAAAAG
Found at i:29928035 original size:62 final size:62
Alignment explanation
Indices: 29927952--29928198 Score: 368
Period size: 62 Copynumber: 4.0 Consensus size: 62
29927942 TCGCAAAAGC
* * * * * *
29927952 TTGACAAGGTCAGATGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATATGTTT
1 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* *
29928014 TTGACAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTT
1 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
29928076 TTGACAAGTTCGGAAGTTCATGCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTTT
1 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
29928138 TTGACAAGTTCGGAAGTTGGTCCAAGAACCAACAGAGAAACAATTCTCACGTAACTAAGTT
1 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29928199 ATTAATTAAC
Statistics
Matches: 166, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 166 1.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.24
Consensus pattern (62 bp):
TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
Found at i:29928445 original size:62 final size:62
Alignment explanation
Indices: 29928353--29928602 Score: 324
Period size: 62 Copynumber: 4.0 Consensus size: 62
29928343 ATCGAAAAAG
* * * *
29928353 TTTGACAAGTTCGGATTTTTGTCCATGAACCGAGAGAGAAACAATTCTTACGCAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGCAAATAAGTT
* * **
29928415 TGTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAG-GGAACAATT-TTCACTTAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT-ACGCAAATAAGTT
* * * *
29928476 TTTGGCAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGCAAATAAGTT
* * * * *
29928538 TTTGACAAGTTCGAAGGTTTGTCCAAGAACCAAGAGAGAAGCAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGCAAATAAGTT
29928600 TTT
1 TTT
29928603 AATTCAAAGT
Statistics
Matches: 161, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
60 2 0.01
61 51 0.32
62 107 0.66
63 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGCAAATAAGTT
Found at i:29928829 original size:62 final size:62
Alignment explanation
Indices: 29928754--29929001 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
29928744 ATCGCAAAAG
* * * * *
29928754 TTTGACAAGTTCGGATGTTCGTCCAAGAACTAAGAGGGAAACAATACTCACGTAAATATGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
29928816 TTTGACAAGTTCGGAAGCTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29928878 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGTGAGAAATAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
29928940 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29929002 ATTAATTAAC
Statistics
Matches: 172, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 172 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29929031 original size:402 final size:402
Alignment explanation
Indices: 29927755--29929213 Score: 1989
Period size: 402 Copynumber: 3.6 Consensus size: 402
29927745 CCGAAAATTA
* * * * * *
29927755 GTCCAAGAACAAAGAGAGAAGCAATTCTTACGTAAATAAGTTTTTAATTCAAACTCTAAAACTTG
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTCAAAGTCCAAAACTTG
* * * * * *
29927820 TTTAGAAACTCACAAACTATTTAGAACAAATTATTTGATTTCCTGAGCATGGACTGTTCAAAAAA
66 TTTACAAAATGACAAACTATTTAGAACAAATGATGTGATTTCCTGAGCATGGAATGTTCAAAAAA
** *
29927885 TTGCTGGAAGGAATAGATCGTCTTGAATACTTTCAA-GAACTGAAGTTATAAAAGAAATCGCAAA
131 TTGCTCAAAGGAATAGATCGTCTTGAATACTTT-AAGGAACCGAAGTTATAAAAGAAATCGCAAA
* * *
29927949 AGCTTGACAAGGTCAGATGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATATGTTT
195 AGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATATGTTT
* *
29928014 TTGACAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTG
260 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
* * * *
29928079 ACAAGTTCGGAAGTTCATGCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTTTTTGACA
325 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACA
*
29928144 AGTTCGGAAGTTG
390 AGTTCGGAAGTTC
* *
29928157 GTCCAAGAACCAACAGAGAAACAATTCTCACGTAACTAAGTTATTAATT-AACAGTCCAAAACTT
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTCAA-AGTCCAAAACTT
** * * ***
29928221 GTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGGAAA
65 GTTTACAAAATGACAAACTATTTAGAACAAATGATGTGATTTCCTGAGCATGGAATGTTCAAAAA
* * * * *
29928286 TTTGCTCAAAGGAATGGATCGTCTTGAATGCTTTAAGGAACCGAAGTTATATAAGAAATCGAAAA
130 ATTGCTCAAAGGAATAGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGCAAA
* * * * * * * * *
29928351 AGTTTGACAAGTTCGGATTTTTGTCCATGAACCGAGAGAGAAACAATTCTTACGCAAATAAGTTT
195 AGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATATGTTT
* * * * *
29928416 GTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAG-GGAACAATTTTCACTTAAATAAGTTTTTG
260 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
* *
29928480 GCAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAGTTTTTGACA
325 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACA
*
29928545 AGTTC-GAAGGTTT
390 AGTTCGGAA-GTTC
* * *
29928558 GTCCAAGAACCAAGAGAGAAGCAATTCTTACGTAAATAAGTTTTTAATTCAAAGTCCAAAACTTG
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTCAAAGTCCAAAACTTG
* * * * *
29928623 TTTACAAACTGACAAACTGTTTAGAACAAATTATTTGATTTCCTGAGCATGGACTGTTCAAAAAA
66 TTTACAAAATGACAAACTATTTAGAACAAATGATGTGATTTCCTGAGCATGGAATGTTCAAAAAA
* * *
29928688 TTGCTCGAAGGAATAGATCGTCCTGAATACTTTCAA-CAACCGAAGTTATAAAAGAAATCGCAAA
131 TTGCTCAAAGGAATAGATCGTCTTGAATACTTT-AAGGAACCGAAGTTATAAAAGAAATCGCAAA
* * *
29928752 AGTTTGACAAGTTCGGATGTTCGTCCAAGAACTAAGAGGGAAACAATACTCACGTAAATATGTTT
195 AGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATATGTTT
*
29928817 TTGACAAGTTCGGAAGCTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
260 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
* *
29928882 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGTGAGAAATAATTCTCACGTAAATAAGTTTTTGACA
325 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACA
29928947 AGTTCGGAAGTTC
390 AGTTCGGAAGTTC
*
29928960 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATT-AACAGTCCAAAACTT
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTCAA-AGTCCAAAACTT
* * ***
29929024 GTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTT-CTCGAGCATGGAATGTTTGGAA
65 GTTTACAAAATGACAAACTATTTAGAACAAATGATGTGATTTCCT-GAGCATGGAATGTTCAAAA
* * * * * **
29929088 ATTTGCTCAAAGGAATGGATCGTCTTGACTACTTTAAGGAACCTAAGTTATAAAAGAACTCGTGA
129 AATTGCTCAAAGGAATAGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGCAA
* * * *
29929153 AAGTTTAACAAGTTCAAAAGTTCGTCCACGAACCAAGAGAGAAACAACT-CTCACGTAAATA
194 AAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAA-TACTCACGTAAATA
29929214 AGTGTTTAAT
Statistics
Matches: 914, Mismatches: 132, Indels: 22
0.86 0.12 0.02
Matches are distributed among these distances:
400 3 0.00
401 352 0.39
402 555 0.61
403 4 0.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (402 bp):
GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTCAAAGTCCAAAACTTG
TTTACAAAATGACAAACTATTTAGAACAAATGATGTGATTTCCTGAGCATGGAATGTTCAAAAAA
TTGCTCAAAGGAATAGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGCAAAA
GTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATATGTTTT
TGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
CAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAA
GTTCGGAAGTTC
Found at i:29929319 original size:216 final size:216
Alignment explanation
Indices: 29928944--29929433 Score: 655
Period size: 216 Copynumber: 2.3 Consensus size: 216
29928934 TAAGTTTTTG
*
29928944 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATT
1 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATT
* * * *
29929009 AACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCA
66 AACAGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATGATGGGATTTCTCGAGCA
** *** * *
29929074 TGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGACTACTTTAAGGAACCTAAGTTAT
131 TGGAACATTAAAAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* * *
29929139 AAAAGAACTCGTGAAAGTTTA
196 AAAAAAAATCGTAAAAGTTTA
** * *
29929160 ACAAGTTCAAAAGTTCGTCCACGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTGT-TTAAT
1 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT-TATTAAT
*
29929224 TCAA-GGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATGATGGGATTT-TCCGA
65 T-AACAGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATGATGGGATTTCT-CGA
* *
29929287 GCATGGAACATTCAAAAAATTT-CTCGAAGGAATGGATCGTCTTGAATACTTTTAGGAACCGAAG
128 GCATGGAACATT-AAAAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* *
29929351 TTATAAAAAAAATCTTAAAAGTTTG
192 TTATAAAAAAAATCGTAAAAGTTTA
* ** * *
29929376 ACAATTTCGGATTTTCGTCCAAGAACCATGAGAGAAACAATTCTTACGTAAATAAGTT
1 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29929434 TTTCACAAGT
Statistics
Matches: 237, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
215 2 0.01
216 226 0.95
217 9 0.04
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (216 bp):
ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATT
AACAGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATGATGGGATTTCTCGAGCA
TGGAACATTAAAAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
AAAAAAAATCGTAAAAGTTTA
Found at i:29929473 original size:62 final size:62
Alignment explanation
Indices: 29929389--29929557 Score: 221
Period size: 62 Copynumber: 2.7 Consensus size: 62
29929379 ATTTCGGATT
* * **
29929389 TTCGTCCAAGAACCATGAGAGAAACAATTCTTACGTAAATAAGTTTTTCACAAGTTTGGAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACAAGTTCAGAAG
* * * * *
29929451 TTTGTCCAAGAACCAAGTGAGAAACAATTCTCATGCAAATAAGTTTTTGACAAGTTCAGAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACAAGTTCAGAAG
* * * *
29929513 TTCGTTCAAGAACAAAGAGAGAAAAAATTCTCACGTAACTAAGTT
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29929558 ATTAATTTAC
Statistics
Matches: 90, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 90 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (62 bp):
TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACAAGTTCAGAAG
Found at i:29929984 original size:217 final size:214
Alignment explanation
Indices: 29929496--29929993 Score: 570
Period size: 217 Copynumber: 2.3 Consensus size: 214
29929486 CAAATAAGTT
* * * *
29929496 TTTGACAAGTTC-AGAAGTTCGTTC-AAGAACAAAGAGAGAAAAAATTCTCACGTAACTAAGTTA
1 TTTGACAACTTCGA-AAGTTCG-TCAAAGAAC-CAGAGAGAAAAAATTCTCACGTAAATAAGTTT
* * * * *
29929559 TTAATTTACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCT
63 TTAATTTAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCT
* * * *
29929624 CAAGCATGGAATGTTTGGAAATTTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTA
128 CAAGCATGGAACGTTCGAAAATTT-CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGA
* * *
29929689 AGTTTTAAAAGAACTCATGAAAG
192 AGTTATAAAAGAAATCATAAAAG
* * *
29929712 TTTGACAAGTTCGAAAGTTCGTCAAAGAACCAAATGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAACTTCGAAAGTTCGTCAAAGAACCAGA-GAGAAAAAATTCTCACGTAAATAAGTTTTT
* *
29929777 AATTTAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGATCAAATGATGGGATTTTTTC
65 AATTTAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGGGA-TTTCTC
* * * * * *
29929842 GATCATGGAACGTTCGAAAAAATTT-TCGAATGAATGGATCATCTTGTATACTTTTATGAACCGA
129 AAGCATGGAACGTTCG--AAAATTTCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGA
*
29929906 AGTTATAAAAGAAATCGTAAAAG
192 AGTTATAAAAGAAATCATAAAAG
* * *** * * *
29929929 TTTGACAACTTCGAATGTTTGTCCCTGAACTGAGAGAGAAATAATTCTTACGTAAATAAGTTTTT
1 TTTGACAACTTCGAAAGTTCGTCAAAGAAC-CAGAGAGAAAAAATTCTCACGTAAATAAGTTTTT
29929994 GACAAGTTCG
Statistics
Matches: 239, Mismatches: 36, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
215 4 0.02
216 104 0.44
217 123 0.51
218 2 0.01
219 6 0.03
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.31
Consensus pattern (214 bp):
TTTGACAACTTCGAAAGTTCGTCAAAGAACCAGAGAGAAAAAATTCTCACGTAAATAAGTTTTTA
ATTTAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCTCAA
GCATGGAACGTTCGAAAATTTCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTT
ATAAAAGAAATCATAAAAG
Found at i:29930027 original size:62 final size:62
Alignment explanation
Indices: 29929929--29930114 Score: 237
Period size: 62 Copynumber: 3.0 Consensus size: 62
29929919 ATCGTAAAAG
* * * ** ** * *
29929929 TTTGACAACTTCGAATGTTTGTCCCTGAACTGAGAGAGAAATAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
29929991 TTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29930053 TTTTACTAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29930115 ATTAATTAAC
Statistics
Matches: 108, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 108 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29930134 original size:556 final size:555
Alignment explanation
Indices: 29928834--29930311 Score: 2284
Period size: 556 Copynumber: 2.7 Consensus size: 555
29928824 GTTCGGAAGC
*
29928834 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCG
1 TCGTCCAAGAACC-AGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCG
* *
29928899 TCCAAGAACCAAGTGAGAAATAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCC
65 TCCAAGAACCAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCC
*
29928964 AAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTA
130 AAGAACAAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTA
29929029 CAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGC
195 CAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGC
* * * *
29929094 TCAAAGGAATGGATCGTCTTGACTACTTTAAGGAACCTAAGTTATAAAAGAACTCGTGAAAGTTT
260 TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCATGAAAGTTT
* * *
29929159 AACAAGTTCAAAAGTTCGTCCACGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTGTTTAAT
325 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTGTTTAAT
* *
29929224 TCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATGATGGGATTTTCCGAGC
390 TCAAAGACCAAAACTTATTTACAAAAAGACAAACTATTTAGACCAAATGATGGGATTTTCCGAGC
*
29929289 ATGGAACATTCAAAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTTTAGGAACCGAAGTTA
455 ATGGAACATTCAAAAAATTTCTCGAAGGAATGGATCATCTTGAATACTTTTAGGAACCGAAGTTA
* * *
29929354 TAAAAAAAATCTTAAAAGTTTGACAATTTCGGATTT
520 TAAAAAAAATCGTAAAAGTTTGACAACTTCGAATTT
* *
29929390 TCGTCCAAGAACCATGAGAGAAACAATTCTTACGTAAATAAGTTTTTCACAAGTTTGGAAGTTTG
1 TCGTCCAAGAACCA-GAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCG
* * *
29929455 TCCAAGAACCAAGTGAGAAACAATTCTCATGCAAATAAGTTTTTGACAAGTTC-AGAAGTTCGTT
65 TCCAAGAACCAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGA-AAGTTCGTC
* *
29929519 CAAGAACAAAGAGAGAAAAAATTCTCACGTAACTAAGTTATTAATTTACAGTCCAAAACTTGTTT
129 CAAGAACAAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTT
*
29929584 ACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCAAGCATGGAATGTTTGGAAATTTG
194 ACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTG
*
29929649 CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTTTAAAAGAACTCATGAAAGTT
259 CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCATGAAAGTT
* * *
29929714 TGACAAGTTCGAAAGTTCGTCAAAGAACCAA-ATGAGAAACAATTCTCACGTAAATAAGTTTTTA
324 TGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA-GAGAAACAACTCTCACGTAAATAAGTGTTTA
* * * *
29929778 ATTTAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGATCAAATGATGGGATTTTTTCG
388 ATTCAAAGACCAAAACTTATTTACAAAAAGACAAACTATTTAGACCAAATGATGGGA-TTTTCCG
* * * * *
29929843 ATCATGGAACGTTCGAAAAAATTT-TCGAATGAATGGATCATCTTGTATACTTTTATGAACCGAA
452 AGCATGGAACATTC-AAAAAATTTCTCGAAGGAATGGATCATCTTGAATACTTTTAGGAACCGAA
*
29929907 GTTATAAAAGAAATCGTAAAAGTTTGACAACTTCGAATGTT
516 GTTATAAAAAAAATCGTAAAAGTTTGACAACTTCGAAT-TT
** * * * *
29929948 T-GTCCCTGAACTGAGAGAGAAATAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAGGTTCG
1 TCGTCCAAGAAC-CAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCG
* * *
29930012 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTACTAGTTCGAAAGTTCGTCC
65 TCCAAGAACCAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCC
* *
29930077 AAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAAT-CAAAACTTGTTTA
130 AAGAACAAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTA
* *
29930141 CAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTTGAGCATGGAATGTTTGGAAATTTTC
195 CAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGC
* * * * * *
29930206 TCGAAGGAATGGATCCTCTTGAATACTTTCAGGAATCGAAGTTATAAAAGAAAT-AGTAAAAGTT
260 TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCA-TGAAAGTT
* * *
29930270 TGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAA
324 TGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAA
29930312 GAACCATGAG
Statistics
Matches: 841, Mismatches: 71, Indels: 20
0.90 0.08 0.02
Matches are distributed among these distances:
555 3 0.00
556 578 0.69
557 246 0.29
558 14 0.02
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (555 bp):
TCGTCCAAGAACCAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGT
CCAAGAACCAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCA
AGAACAAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAC
AAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGCT
CGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCATGAAAGTTTG
ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTGTTTAATT
CAAAGACCAAAACTTATTTACAAAAAGACAAACTATTTAGACCAAATGATGGGATTTTCCGAGCA
TGGAACATTCAAAAAATTTCTCGAAGGAATGGATCATCTTGAATACTTTTAGGAACCGAAGTTAT
AAAAAAAATCGTAAAAGTTTGACAACTTCGAATTT
Found at i:29930312 original size:18 final size:18
Alignment explanation
Indices: 29930291--29930326 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
29930281 GATGTTCATC
29930291 CAAGAACCAAGAGAGAAA
1 CAAGAACCAAGAGAGAAA
*
29930309 CAAGAACCATGAGAGAAA
1 CAAGAACCAAGAGAGAAA
29930327 TAATTCTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.17, G:0.22, T:0.03
Consensus pattern (18 bp):
CAAGAACCAAGAGAGAAA
Found at i:29930547 original size:296 final size:295
Alignment explanation
Indices: 29930014--29930607 Score: 830
Period size: 296 Copynumber: 2.0 Consensus size: 295
29930004 GAGGTTCGTC
** * *
29930014 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTACTAGTTCGAAAGTTCGTCCAA
1 CAAGAACCAAGAGAGAAACAATTCTCACACAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAA
* *
29930079 GAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAATCAAAACTTGTTTACAA
66 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAACAATCAAAACTTGTTTACAA
* * * ** ** * * * * *
29930144 AATGACAAACTATTTTGACCAAATGATGTGATTTCTTGAGCATGGAATGTTTGGAAATTTTCTCG
131 AAAGACAAACTATGTAGACCAAATGATGCAATTTCCCGAGCACGGAATGTTCGAAAAATTGCTCG
* * * *
29930209 AAGGAATGGATCCTCTTGAATACTTTCAGGAATCGAAGTTATAAAAGAAATAGTAAAAGTTTGAC
196 AAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAAGAGTAAAAGTTTGAC
*
29930274 AAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAA
261 AAGTTCGAATGTTCATCCAAGAACCAAGAGAGAAA
* * * *
29930309 CAAGAACCATGAGAGAAATAATTCTTACACAAATAAGTTTTTGACAAGTTCGAAAGTTTGTCCAA
1 CAAGAACCAAGAGAGAAACAATTCTCACACAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAA
* * * * *
29930374 GAACCAAGAGAGAACCAATTCTCATGTAAATAAGTTTTTAATTCACTGA-CAAAAACTTGTTTAC
66 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAAC-AATC-AAAACTTGTTTAC
*
29930438 AAAAAGACAAACTATGTAGACCAAATTATGCAATTTCCCGAGCACGGAATGTTCGAAAAATTGCT
129 AAAAAGACAAACTATGTAGACCAAATGATGCAATTTCCCGAGCACGGAATGTTCGAAAAATTGCT
* *
29930503 CGAAAGAATGGATCATCTTGAATACTTTTAGGAACCGAAGTTATAAAAGAAAGCGTAAAAGTTTG
194 CGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAAGAGTAAAAGTTTG
* *
29930568 ACAAGTTTGAATGTTCGTCCAAGAACCAAGAGAGAAA
259 ACAAGTTCGAATGTTCATCCAAGAACCAAGAGAGAAA
29930605 CAA
1 CAA
29930608 TTCTTACGTA
Statistics
Matches: 260, Mismatches: 37, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
295 98 0.38
296 162 0.62
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (295 bp):
CAAGAACCAAGAGAGAAACAATTCTCACACAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAA
GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAACAATCAAAACTTGTTTACAA
AAAGACAAACTATGTAGACCAAATGATGCAATTTCCCGAGCACGGAATGTTCGAAAAATTGCTCG
AAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAAGAGTAAAAGTTTGAC
AAGTTCGAATGTTCATCCAAGAACCAAGAGAGAAA
Found at i:29930602 original size:635 final size:637
Alignment explanation
Indices: 29929712--29930947 Score: 1818
Period size: 636 Copynumber: 1.9 Consensus size: 637
29929702 CTCATGAAAG
29929712 TTTGACAAGTTCGAAAGTTCGTCAAAGAACCAAATGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCAAAGAACCAAATGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * * **
29929777 AATTTAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGATCAAATGATGGGATTTTTTC
66 AATTCAAAGACAAAAACTTATTTACAAAAAGACAAACTATGTAGACCAAATGATGGCAATTTCCC
* * * * * *
29929842 GATCATGGAACGTTCGAAAAAATTTTCGAATGAATGGATCATCTTGTATACTTTTATGAACCGAA
131 GAGCACGGAACGTTCGAAAAAATTCTCGAAAGAATGGATCATCTTGAATACTTTTAGGAACCGAA
* * ** ** *
29929907 GTTATAAAAGAAATCGTAAAAGTTTGACAACTTCGAATGTTTGTCCCTGAACTGAGAGAGAAATA
196 GTTATAAAAGAAAGCGTAAAAGTTTGACAACTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACA
29929972 ATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAATT
261 ATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAATT
* * *
29930037 CTCACGTAAATAAGTTTTTTACTAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTC
326 CTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * *
29930102 ACGTAACTAAGTTATTAATT--AACAATCAAAACTTGTTTACAAAATGACAAACTATTTTGACCA
391 ACGTAAATAAGTTATTAATTCAAAC-ACCAAAACTTGTCTACAAAATGACAAACTATTTAGACCA
* * * * * * * *
29930165 AATGATGTGA-TTTCTTGAGCATGGAATGTTTGGAAATTTTCTCGAAGGAATGGATCCTCTTGAA
455 AATGACGTGATTTTC-CGAGCATGGAATGCTAGAAAAATTGCTCGAAGGAATAGATCCTCTTGAA
* *
29930229 TACTTTCAGGAATCGAAGTTATAAAAGAAATAGTAAAAGTTTGACAAGTTCGGATGTTCATCCAA
519 TACTTTCAAGAATCGAAGTTATAAAAGAAATAGCAAAAGTTTGACAAGTTCGGATGTTCATCCAA
29930294 GAACCAAGAGAGAAACAAGAACCATGAGAGAAATAATTCTTACACAAATAAGTT
584 GAACCAAGAGAGAAACAAGAACCATGAGAGAAATAATTCTTACACAAATAAGTT
* * * *
29930348 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGA-GAGAACCAATTCTCATGTAAATAAGTTTT
1 TTTGACAAGTTCGAAAGTTCGTCAAAGAACCAA-ATGAGAAACAATTCTCACGTAAATAAGTTTT
** * *
29930412 TAATTCACTGACAAAAACTTGTTTACAAAAAGACAAACTATGTAGACCAAATTAT-GCAATTTCC
65 TAATTCAAAGACAAAAACTTATTTACAAAAAGACAAACTATGTAGACCAAATGATGGCAATTTCC
*
29930476 CGAGCACGGAATGTTCG-AAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTTAGGAACCG
130 CGAGCACGGAACGTTCGAAAAAATT-CTCGAAAGAATGGATCATCTTGAATACTTTTAGGAACCG
* *
29930540 AAGTTATAAAAGAAAGCGTAAAAGTTTGACAAGTTTGAATGTTCGTCCAAGAACCAAGAGAGAAA
194 AAGTTATAAAAGAAAGCGTAAAAGTTTGACAACTTCGAATGTTCGTCCAAGAACCAAGAGAGAAA
*
29930605 CAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
259 CAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAA
* *
29930670 TTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
324 TTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * *
29930735 TCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTCTACAAACTGACGAACTATTTAGACC
389 TCACGTAAATAAGTTATTAATTCAAACACCAAAACTTGTCTACAAAATGACAAACTATTTAGACC
* *
29930800 AAATTACGTGATTTTCCGAGCATGGAATGCTAGAAAAATTGCTCGAAGGAATAGATCGTCTTGAA
454 AAATGACGTGATTTTCCGAGCATGGAATGCTAGAAAAATTGCTCGAAGGAATAGATCCTCTTGAA
* * * *
29930865 TACTTTCAAGAATTGAAGTTATAAAAGAAATTGCAAAAGTTTGACAAGTTTGGATGTTCGTCCAA
519 TACTTTCAAGAATCGAAGTTATAAAAGAAATAGCAAAAGTTTGACAAGTTCGGATGTTCATCCAA
* *
29930930 GAGCCAGGAGAGAAACAA
584 GAACCAAGAGAGAAACAA
29930948 TTCTTACGTA
Statistics
Matches: 531, Mismatches: 64, Indels: 10
0.88 0.11 0.02
Matches are distributed among these distances:
634 7 0.01
635 254 0.48
636 262 0.49
637 8 0.02
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (637 bp):
TTTGACAAGTTCGAAAGTTCGTCAAAGAACCAAATGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACAAAAACTTATTTACAAAAAGACAAACTATGTAGACCAAATGATGGCAATTTCCC
GAGCACGGAACGTTCGAAAAAATTCTCGAAAGAATGGATCATCTTGAATACTTTTAGGAACCGAA
GTTATAAAAGAAAGCGTAAAAGTTTGACAACTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACA
ATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAATT
CTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
ACGTAAATAAGTTATTAATTCAAACACCAAAACTTGTCTACAAAATGACAAACTATTTAGACCAA
ATGACGTGATTTTCCGAGCATGGAATGCTAGAAAAATTGCTCGAAGGAATAGATCCTCTTGAATA
CTTTCAAGAATCGAAGTTATAAAAGAAATAGCAAAAGTTTGACAAGTTCGGATGTTCATCCAAGA
ACCAAGAGAGAAACAAGAACCATGAGAGAAATAATTCTTACACAAATAAGTT
Found at i:29930661 original size:62 final size:62
Alignment explanation
Indices: 29930564--29930752 Score: 342
Period size: 62 Copynumber: 3.0 Consensus size: 62
29930554 AGCGTAAAAG
* *
29930564 TTTGACAAGTTTGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
29930626 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
29930688 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29930750 TTT
1 TTT
29930753 AATTCAAACA
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 122 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29930929 original size:340 final size:340
Alignment explanation
Indices: 29930309--29930968 Score: 969
Period size: 340 Copynumber: 1.9 Consensus size: 340
29930299 AAGAGAGAAA
* * * *
29930309 CAAGAACCATGAGAGAAATAATTCTTACACAAATAAGTTTTTGACAAGTTCGAAAGTTTGTCCAA
1 CAAGAACCAAGAGAGAAACAATTCTCACACAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAA
* * *** *
29930374 GAACCAAGAGAGAACCAATTCTCATGTAAATAAGTTTTTAATTCACTGACAAAAACTTGTTTACA
66 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACACAAAAACTTGTCTACA
* * *
29930439 AAAAGACAAACTATGTAGACCAAATTATGCAATTTCCCGAGCACGGAATGTTCGAAAAATTGCTC
131 AAAAGACAAACTATGTAGACCAAATTACGCAATTTCCCGAGCACGGAATGCTAGAAAAATTGCTC
* * * *
29930504 GAAAGAATGGATCATCTTGAATACTTTTAGGAACCGAAGTTATAAAAGAAAGCGTAAAAGTTTGA
196 GAAAGAATAGATCATCTTGAATACTTTCAAGAACCGAAGTTATAAAAGAAAGCGCAAAAGTTTGA
29930569 CAAGTTTGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAA
261 CAAGTTTGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAA
29930634 GTTCGGATGTTCGTC
326 GTTCGGATGTTCGTC
** * *
29930649 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAA
1 CAAGAACCAAGAGAGAAACAATTCTCACACAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAA
*
29930714 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTCTACA
66 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACACAAAAACTTGTCTACA
** * * ** * *
29930779 AACTGACGAACTATTTAGACCAAATTACGTGATTTTCCGAGCATGGAATGCTAGAAAAATTGCTC
131 AAAAGACAAACTATGTAGACCAAATTACGCAATTTCCCGAGCACGGAATGCTAGAAAAATTGCTC
* * ** **
29930844 GAAGGAATAGATCGTCTTGAATACTTTCAAGAATTGAAGTTATAAAAGAAATTGCAAAAGTTTGA
196 GAAAGAATAGATCATCTTGAATACTTTCAAGAACCGAAGTTATAAAAGAAAGCGCAAAAGTTTGA
* * *
29930909 CAAGTTTGGATGTTCGTCCAAGAGCCAGGAGAGAAACAATTCTTACGTAAATAAGTTTTT
261 CAAGTTTGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
29930969 AATTTAAACA
Statistics
Matches: 281, Mismatches: 39, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
340 281 1.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.27
Consensus pattern (340 bp):
CAAGAACCAAGAGAGAAACAATTCTCACACAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAA
GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACACAAAAACTTGTCTACA
AAAAGACAAACTATGTAGACCAAATTACGCAATTTCCCGAGCACGGAATGCTAGAAAAATTGCTC
GAAAGAATAGATCATCTTGAATACTTTCAAGAACCGAAGTTATAAAAGAAAGCGCAAAAGTTTGA
CAAGTTTGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAA
GTTCGGATGTTCGTC
Found at i:29931610 original size:216 final size:215
Alignment explanation
Indices: 29930688--29931616 Score: 1132
Period size: 216 Copynumber: 4.3 Consensus size: 215
29930678 TAAATAAGTT
*
29930688 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* * * * * * *
29930753 AATTCAAACACCAAAACTTGTCTACAAACTGACGAACTATTTAGACCAAATTACGTGATTTTCCG
66 AATTCAAACACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCG
* * * * *
29930818 AGCATGGAATGCTAGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTCAA-GAA-TTGA
131 AGCAAGGAATGTTTGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTT-AAGGAACCT-A
* *
29930881 AGTTATAAAAGAAATTGCAAAAG
193 AGTTATAAAAGAAATCGTAAAAG
* * * * *
29930904 TTTGACAAGTTTGGATGTTCGTCCAAGAGCCAGGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* * * * * *
29930969 AATTTAAACACCAAAACATGTTTACGAAATGACAAACTATTTAGACCATACGGTGCGATTTTACG
66 AATTCAAACACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCG
* * * * *
29931034 AGCATGGAATGTTTAAAAAATTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGTACCGAAGT
131 AGCAAGGAATGTTTGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGT
*
29931099 TATAAAAGAACTCGTAAAAG
196 TATAAAAGAAATCGTAAAAG
* * *
29931119 TTTGAAAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* * * * *
29931184 AATTGAAAGACCAAAACCTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCGATTTCCCG
66 AATTCAAACACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCG
** * * * * *
29931249 AGCAAGGAAATCATCGAAAAACTGCCCAAAGGAATGGATCGTCTTGAATACTTTAAGAAATC-AA
131 AGCAAGG-AATGTTTGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAA
* *
29931313 GGTTATAAAACAACTCGTAAAAG
194 -GTTATAAAAGAAATCGTAAAAG
* * * * *
29931336 -TTAAAAATGTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCA-AGTAAATAAGTTT
1 TTTGACAA-GTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACA-TAAATAAG-TT
* *
29931399 TTTAATTCAAAGACCAAAACAT-TTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTT
63 TTTAATTCAAACACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTT
* * * * *
29931463 CCGAGCAAGGAATGTTTGGAAAATAGCTCGAAGGAATGGATTGTCATGAATTCTTTCAGGAACCT
128 CCGAGCAAGGAATGTTTGAAAAAT-GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCT
*
29931528 AAGTTATAAAAGAAATCATAAAAG
192 AAGTTATAAAAGAAATCGTAAAAG
* ** *
29931552 TTGGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTTTTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
29931617 GACAAGTTTG
Statistics
Matches: 610, Mismatches: 91, Indels: 25
0.84 0.13 0.03
Matches are distributed among these distances:
214 2 0.00
215 177 0.29
216 253 0.41
217 156 0.26
218 22 0.04
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (215 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
AATTCAAACACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCG
AGCAAGGAATGTTTGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGT
TATAAAAGAAATCGTAAAAG
Found at i:29931886 original size:286 final size:286
Alignment explanation
Indices: 29931360--29931924 Score: 789
Period size: 286 Copynumber: 2.0 Consensus size: 286
29931350 AAGTTCGTCT
29931360 AAGAACAAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTTAATTCAAAGACCAAAACATTTTT
1 AAGAACAAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTTAATTCAAAGACCAAAACATTTTT
* * ***
29931425 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCAAGGAATGTTTGGAAAATAGC
66 CAAAAAGACAAACTATTGAGACCAAATGATGCGATTTTCCGAGCAAGGAATGTTCAAAAAATAGC
* * * * *
29931490 TCGAAGGAATGGATTGTCATGAATTCTTTCAGGAACCTAAGTTATAAAAGAAATCATAAAAGTTG
131 TCAAAGGAATGGATTGTCATGAATACTGTCAGGAACCGAAGTTAAAAAAGAAATCATAAAAGTTG
*
29931555 GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTTTTTGAC
196 GACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTTTTTGAC
*
29931620 AAGTTTGGAAGTTCGTCCAAAAACCA
261 AAGTTCGGAAGTTCGTCCAAAAACCA
* * *
29931646 AAGAACCAAGAGAG-AACTAATTCTCACGTAAATAAG-TTTTTAATTCAATGACCAAAAC-TTGT
1 AAGAACAAAGAGAGAAAC-AATTCTCAAGTAAATAAGTTTTTTAATTCAAAGACCAAAACATT-T
* *
29931708 TTACAAAAAGACAAACTATTGAGACCAAATTATGCGA-TTTCTCGAGCATGGAATGTTCAAAAAA
64 TT-CAAAAAGACAAACTATTGAGACCAAATGATGCGATTTTC-CGAGCAAGGAATGTTCAAAAAA
* * * * *
29931772 TTGCTTAAAGGAGTGGATTAG-CTTGAATACTGTCAGGAACCGAAGTTAAAAAAGAAATCGTAAA
127 TAGCTCAAAGGAATGGATT-GTCATGAATACTGTCAGGAACCGAAGTTAAAAAAGAAATCATAAA
* * * * *
29931836 AGTTTGATAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAATAATTCTTACATAAATAAGTTT
191 AGTTGGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTTT
**
29931901 TTGACAAGTTCGGTTGTTCGTCCA
256 TTGACAAGTTCGGAAGTTCGTCCA
29931925 TGATCCAAGA
Statistics
Matches: 245, Mismatches: 29, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
284 2 0.01
285 31 0.13
286 211 0.86
287 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (286 bp):
AAGAACAAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTTAATTCAAAGACCAAAACATTTTT
CAAAAAGACAAACTATTGAGACCAAATGATGCGATTTTCCGAGCAAGGAATGTTCAAAAAATAGC
TCAAAGGAATGGATTGTCATGAATACTGTCAGGAACCGAAGTTAAAAAAGAAATCATAAAAGTTG
GACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTTTTTGAC
AAGTTCGGAAGTTCGTCCAAAAACCA
Found at i:29931935 original size:62 final size:62
Alignment explanation
Indices: 29931838--29932001 Score: 220
Period size: 62 Copynumber: 2.6 Consensus size: 62
29931828 ATCGTAAAAG
* * * *
29931838 TTTGATAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAATAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAATAATACTCACATAAATAAGTT
* * * * *
29931900 TTTGACAAGTTCGGTTGTTCGTCCATGATCCAAGAGTGAAATAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAATAATACTCACATAAATAAGTT
* * *
29931962 ATTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAA
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
29932002 CCAATTCAAA
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 86 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAATAATACTCACATAAATAAGTT
Found at i:29932017 original size:62 final size:62
Alignment explanation
Indices: 29931839--29932023 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 62
29931829 TCGTAAAAGT
* * * * *
29931839 TTGATAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAATAATTCTTACATAAATAAGTTT
1 TTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAATAATTCTAACGTAAATAAGTTA
* * * * * *
29931901 TTGACAAGTTCGGTTGTTCGTCCATGATCCAAGAGTGAAATAATACTCACGTAAATAAGTTA
1 TTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAATAATTCTAACGTAAATAAGTTA
* * ** * *
29931963 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCAAATGTAAATAAGTT
1 TTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAATAATTCTAACGTAAATAAGTT
29932024 TTTAATTCAA
Statistics
Matches: 101, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
62 101 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (62 bp):
TTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAATAATTCTAACGTAAATAAGTTA
Found at i:29935043 original size:21 final size:22
Alignment explanation
Indices: 29935002--29935043 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
29934992 GACAAATCTG
*
29935002 AAAAAAAAAACACAGCACTCAA
1 AAAAAAAAAACACAACACTCAA
29935024 AAAAAAATAAACA-AAC-CTCA
1 AAAAAAA-AAACACAACACTCA
29935044 TCGTTATGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 4 0.22
22 9 0.50
23 5 0.28
ACGTcount: A:0.69, C:0.21, G:0.02, T:0.07
Consensus pattern (22 bp):
AAAAAAAAAACACAACACTCAA
Found at i:29935537 original size:20 final size:19
Alignment explanation
Indices: 29935504--29935541 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
29935494 AATATTTTTT
29935504 TATTTTTTTATTTTTCTCA
1 TATTTTTTTATTTTTCTCA
*
29935523 TATTTTTCTTTTTTTTCTC
1 TATTTTT-TTATTTTTCTC
29935542 GACTTTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (19 bp):
TATTTTTTTATTTTTCTCA
Found at i:29937808 original size:62 final size:62
Alignment explanation
Indices: 29937711--29937862 Score: 232
Period size: 62 Copynumber: 2.5 Consensus size: 62
29937701 AGATTTGAAA
* *
29937711 TCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGCGAGTATTGTTTCTCTCTTAGT
1 TCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGCAAGAATTGTTTCTCTCTTAGT
* * * *
29937773 TCTTGGACGAACTTCCGAACTTGTCAAAAGCTTATTTATGTAAGAATTGTTTCTCTCTTGGT
1 TCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGCAAGAATTGTTTCTCTCTTAGT
* *
29937835 TCTTGGACGAACATCTGAACTTGTCAAA
1 TCTTGGACGAACTTCCGAACTTGTCAAA
29937863 CTTTTACGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 82 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
TCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGCAAGAATTGTTTCTCTCTTAGT
Found at i:29938181 original size:215 final size:216
Alignment explanation
Indices: 29937798--29938728 Score: 1013
Period size: 215 Copynumber: 4.3 Consensus size: 216
29937788 CGAACTTGTC
*
29937798 AAAAGCTTATTTATGT-AAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAA
1 AAAAACTTATTTATGTGAA-AATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAA
* * * *
29937862 ACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCATGACAATCCATTCCTTCGAGC
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGACGATCCATTCCTTC-AGG
* * *
29937927 T-ATTTTCCAAACATTCCTTGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTG-
129 TAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
29937990 AAAAATGTTTTGGTCTTTGAATT
194 AAAAATGTTTTGGTCTTTGAATT
* * * * *
29938013 AAAAACTTATTTACGTGAAAATTGTTTCTCTCTTTGTTCTTAGACGAACTTCTGAACATT-TTAC
1 AAAAACTTATTTATGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAAC-TTGTCA-
* * * * *
29938077 AA-TTTTACGAGTTGTTTTGTAACTTCGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCAGG
64 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGACGATCCATTCCTTCAGG
* ** * * *
29938141 TAGTTTTTTGAAGATTTCATGCTCGAGAAATCGCATCATTTGGTGTAAATAGTTTGTCATTTT-T
129 TAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
29938205 TAAACTGGATTTGGTCTTTCAATT
194 AAAAAT-GTTTTGGTCTTTGAATT
* * * *
29938229 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTTTCAAA
1 AAAAACTTATTTATGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
* * * *
29938294 CCTTTACGAGTTCTTTTATAACTTCGGTACCTTAAAGTATTCAAGACG---C--T--TTGA-G-A
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGACGATCCATTCCTTCAGGTA
** * * * * *
29938350 ATTTTTTGAACATTCCATGCTCGTA-AAATCGCACCGTATGGTCTAAATAGTTTGCCATTTCGTA
131 ATTTTTCAAACATTCCATGCTCG-AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
29938414 AACATGTTTTGGT-TTTGAATT
195 AAAATGTTTTGGTCTTTGAATT
* * * * * *
29938435 AAAAACTTGTTTATG-CAAGAATTGTTTCTCTCTTGGCTATTGGACAAACATCCGAACTTGTCAA
1 AAAAACTTATTTATGTGAA-AATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAA
* * *
29938499 ACTTTTGCGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGACGATCTATTCCTTC-GAG
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGACGATCCATTCCTTCAG-G
* * * * *
29938563 CAATTTTTCAAACAGTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
129 TAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
*
29938628 AAACAA-GTTTTGGTCATTGAATT
194 AAA-AATGTTTTGGTCTTTGAATT
* *
29938651 AAAAACTTATTTATGTGAGAATTAGTTCTCTCTTGGTTCTTTGGTTCTTGGACGAACTTCTGAAC
1 AAAAACTTATTTATGTGAAAATT-GTT-TCTC-----TC-TTGGTTCTTGGACGAACATCTGAAC
29938716 TTGTCAAA-TTTTA
58 TTGTCAAACTTTTA
29938729 TTTATGTAAG
Statistics
Matches: 589, Mismatches: 94, Indels: 58
0.79 0.13 0.08
Matches are distributed among these distances:
205 1 0.00
206 103 0.17
207 58 0.10
208 6 0.01
209 3 0.01
211 2 0.00
213 3 0.01
214 4 0.01
215 225 0.38
216 142 0.24
217 4 0.01
218 4 0.01
223 6 0.01
224 28 0.05
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.41
Consensus pattern (216 bp):
AAAAACTTATTTATGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
CTTTTACGAGTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGACGATCCATTCCTTCAGGTA
ATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
AAATGTTTTGGTCTTTGAATT
Found at i:29938596 original size:422 final size:426
Alignment explanation
Indices: 29937798--29938691 Score: 1076
Period size: 422 Copynumber: 2.1 Consensus size: 426
29937788 CGAACTTGTC
* *
29937798 AAAAGCTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
* * * * *
29937863 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCATGACAATCCATTCCTTCGAGCT
66 CCTTTACGAGTTCTTTTATAACTTCGGTACCTAAAAGTATTCAAGAC-A-CCA-T-CTTCGAGCA
* * * * * *
29937928 ATTTTCCAAACATTCCTTGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGAAA
127 ATTTTCCAAACATTCCATGCTCGAGAAATCGCACCATATGGTCTAAATAGTTTGCCATTTCGAAA
* * *
29937993 AATGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTTGTTCTTAGAC
192 AATGTTTTGGTCTTTGAATTAAAAACTTATTTAC-TGAAAATTGTTTCTCTCTTGGCTATTAGAC
* * * * * * *
29938058 GAACTTCTGAACATTTTACAATTTTACGAGTTGTTTTGTAACTTCGATTCCTTAAAGTATTCAAA
256 AAACATCCGAACATTTCACAATTTTACGAGTTCTTTTATAACTTCGATTCCTAAAAGTATTCAAA
* * ** * * * * *
29938123 ACGATCCATTCCTTCAGGTAGTTTTTTGAAGATTTCATGCTCGAGAAATCGCATCATTTGGTGTA
321 ACGATCCATTCCTTCAGGCAATTTTTCAAACAGTCCATGCTCGAGAAATCGCATAATTTGGTCTA
** *
29938188 AATAGTTTGTCATTTTT-TAAACTGGATTTGGTCTTTCAATT
386 AATAGTTTGTC-TTTTTGTAAACAAGATTTGGTCATTCAATT
* * *
29938229 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTTTCAAA
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
* *
29938294 CCTTTACGAGTTCTTTTATAACTTCGGTACCTTAAAGTATTCAAGAC-GC-T-TT-GAG-AATTT
66 CCTTTACGAGTTCTTTTATAACTTCGGTACCTAAAAGTATTCAAGACACCATCTTCGAGCAATTT
*** * *
29938354 TTTGAACATTCCATGCTCGTA-AAATCGCACCGTATGGTCTAAATAGTTTGCCATTTCGTAAACA
131 TCCAAACATTCCATGCTCG-AGAAATCGCACCATATGGTCTAAATAGTTTGCCATTTCG-AAAAA
* *
29938418 TGTTTTGGT-TTTGAATTAAAAACTTGTTTA-TGCAAGAATTGTTTCTCTCTTGGCTATTGGACA
194 TGTTTTGGTCTTTGAATTAAAAACTTATTTACTG-AA-AATTGTTTCTCTCTTGGCTATTAGACA
* * *
29938481 AACATCCGAAC-TTGTCA-AACTTTTGCGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAA
257 AACATCCGAACATT-TCACAA-TTTTACGAGTTCTTTTATAACTTCGATTCCTAAAAGTATTCAA
* * *
29938544 GACGATCTATTCCTTC-GAGCAATTTTTCAAACAGTCCATGCTCGGGAAATCGCATAATTTGGTC
320 AACGATCCATTCCTTCAG-GCAATTTTTCAAACAGTCCATGCTCGAGAAATCGCATAATTTGGTC
* *
29938608 TAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCATTGAATT
384 TAAATAGTTTGTCTTTTTGTAAACAAGATTTGGTCATTCAATT
29938651 AAAAACTTATTTATGTGAGAATTAG-TTCTCTCTTGGTTCTT
1 AAAAACTTATTTATGTGAGAATT-GTTTCTCTCTTGGTTCTT
29938692 TGGTTCTTGG
Statistics
Matches: 399, Mismatches: 55, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
420 2 0.01
421 12 0.03
422 261 0.65
423 18 0.05
424 2 0.01
426 1 0.00
428 1 0.00
431 102 0.26
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.41
Consensus pattern (426 bp):
AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
CCTTTACGAGTTCTTTTATAACTTCGGTACCTAAAAGTATTCAAGACACCATCTTCGAGCAATTT
TCCAAACATTCCATGCTCGAGAAATCGCACCATATGGTCTAAATAGTTTGCCATTTCGAAAAATG
TTTTGGTCTTTGAATTAAAAACTTATTTACTGAAAATTGTTTCTCTCTTGGCTATTAGACAAACA
TCCGAACATTTCACAATTTTACGAGTTCTTTTATAACTTCGATTCCTAAAAGTATTCAAAACGAT
CCATTCCTTCAGGCAATTTTTCAAACAGTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAG
TTTGTCTTTTTGTAAACAAGATTTGGTCATTCAATT
Found at i:29939522 original size:912 final size:906
Alignment explanation
Indices: 29937771--29939603 Score: 2843
Period size: 912 Copynumber: 2.0 Consensus size: 906
29937761 TTCTCTCTTA
29937771 GTTCTTGGACGAACTTCCGAACTTGTCAAAAGCTTATTTATGTAAGAATTGTTTCTCTCTTGGTT
1 GTTCTTGGACGAACTTCCGAACTTGTCAAAAGCTTATTTATGTAAGAATTGTTTCTCTCTTGGTT
*
29937836 CTTGGACGAACATCTGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGT
66 CTTGGACGAACATCTAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGT
*
29937901 ATTCATGACAATCCATTCCTTCGAGCTATTTTCCAAACATTCCTTGCTCGAGAAATCGTATCATT
131 ATTCATGACAATCCATTCCTTCGAGCTATTTTCCAAACATTCCTTGCTCGAGAAATCGCATCATT
*
29937966 TGGTCTAAATAGTTTGTCATTTTGAAAAATGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
196 TGGCCTAAATAGTTTGTCATTTTGAAAAA-----------TTG-A-T----ACTTATTTACGTGA
* *
29938031 AAATTGTTTCTCTCTTTGTTCTTAGACGAACTTCTGAACATTTTACAATTTTACGAGTTGTTTTG
244 AAATTGTTTCTCTCTTTGTTCTTAGACGAACTTCCGAACATTTTACAATTTTACGAGTTGTTTTA
* * *
29938096 TAACTTCGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCAGGTAGTTTTTTGAAGATTTCAT
309 TAACTTCGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCAGGCAATTTTTCGAAGATTTCAT
* * *
29938161 GCTCGAGAAATCGCATCATTTGGTGTAAATAGTTTGTCATTTTTTAAACTGGATTTGGTCTTTCA
374 GCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACTGGATTCGGTCTTTCA
* * *
29938226 ATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTTTC
439 ATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTTTC
*
29938291 AAACCTTTACGAGTTCTTTTATAACTTCGGTACCTTAAAGTATTCAAGACGCTTTGAGAATTTTT
504 AAACCTTTACGAGTTCTTTTATAACTTCGGAACCTTAAAGTATTCAAGACGCTTTGAGAATTTTT
29938356 TGAACATTCCATGCTCGTAAAATCGCACCGTATGGTCTAAATAGTTTGCCATTTCGTAAACATGT
569 TGAACATTCCATGCTCGTAAAATCGCACCGTATGGTCTAAATAGTTTGCCATTTCGTAAACATGT
* **
29938421 TTTGGTTTTGAATTAAAAACTTGTTTATGCAAGAATTGTTTCTCTCTTGGCTATTGGACAAACAT
634 TTTGGTTTTGAATTAAAAACTTATTTACACAAGAATTGTTTCTCTCTTGGCTATTGGACAAACAT
* *
29938486 CCGAACTTGTCAAACTTTTGCGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGACGATC
699 CCGAACTTGTCAAACTTTTGCAATTTCTTTTATAACTTCGGTTCCTAAAACTATTCAAGACGATC
29938551 TATTCCTTCGAGCAATTTTTCAAACAGTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGT
764 TATTCCTTCGAGCAATTTTTCAAACAGTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGT
** * *
29938616 TTGTCTTTTTGTAAACAAGTTTTGGTCATTGAATTAAAAACTTATTTATGTGAGAATTAG-TTCT
829 TTGTCAGTTTGTAAACAAGTTTTGGTCATTGAATTAAAAACTTATTTACGTAAGAATT-GTTTCT
*
29938680 CTCTTGGTTCTTTG
893 CTCTTCGTTCTTTG
* **
29938694 GTTCTTGGACGAACTTCTGAACTTGTC-AAATTTTATTTATGTAAGAATTGTTTCTCTCTTGGTT
1 GTTCTTGGACGAACTTCCGAACTTGTCAAAAGCTTATTTATGTAAGAATTGTTTCTCTCTTGGTT
* *
29938758 CTTGGACGAACATCTAAACTTGTTATACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGT
66 CTTGGACGAACATCTAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGT
* *
29938823 ATTCATGACGATCCATTCCTTCGAGCTATTTTCCAAACATTCCTTGCTCGGGAAATCGCATCATT
131 ATTCATGACAATCCATTCCTTCGAGCTATTTTCCAAACATTCCTTGCTCGAGAAATCGCATCATT
*
29938888 TGGCCTAAATAGTTTGTCATTTTGAAAAA-TG-T-CTTATTTACGTGAGAATTGTTTCTCTCTTT
196 TGGCCTAAATAGTTTGTCATTTTGAAAAATTGATACTTATTTACGTGAAAATTGTTTCTCTCTTT
*
29938950 GTTCTTAGACGAACTTCCGAACATTTTACAATTTTACGAGTTGTTTTATAACTTGGATTCCTTAA
261 GTTCTTAGACGAACTTCCGAACATTTTACAATTTTACGAGTTGTTTTATAACTTCGATTCCTTAA
* *
29939015 AGTATTCAAGACGATCCATTCCTTCGGGCAATTTTTCGAAGATTTCCATGCTCGAGAAATCACAT
326 AGTATTCAAAACGATCCATTCCTTCAGGCAATTTTTCGAAGATTT-CATGCTCGAGAAATCACAT
29939080 CATTTGGTCTAAATAGTTTGTCATTTTTTTAAACTGGATTCGGTCTTTCAATTAAAAACTTATTT
390 CATTTGGTCTAAATAGTTTGTCA-TTTTTTAAACTGGATTCGGTCTTTCAATTAAAAACTTATTT
*
29939145 ACGTGAGAATAGTTTCTCTTTTGGTTCTTGGATGAACTTCTAAACTTTTCAAA-CTTTCACGAGT
454 ACGTGAGAATAGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTTTCAAACCTTT-ACGAGT
29939209 TCTTTTATAACTTCGGAACCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAATTTTTTGAACA
518 TCTTTTATAACTTCGGAACCTTAAAGTATTCAAGACG---C--T--TT-GAGAATTTTTTGAACA
* *
29939274 TTCCATGCTCGTAAAATCGCATCGTATGGTCTAAATAGTTTGTCATTTCGTAAACATGTTTTGGT
575 TTCCATGCTCGTAAAATCGCACCGTATGGTCTAAATAGTTTGCCATTTCGTAAACATGTTTTGG-
* * * **
29939339 TTTTGAATT-AAAACTTATTTACATAAGAATTGTTTTTCTCTTGGCTTTTGGATGAACATCCGAA
639 TTTTGAATTAAAAACTTATTTACACAAGAATTGTTTCTCTCTTGGCTATTGGACAAACATCCGAA
* * * ** *
29939403 CTTGTCAAACTTTTGCAATTTCTTTTATAACTTTGGTTCTTGAAACTATTCAAGGTGATTTATTC
704 CTTGTCAAACTTTTGCAATTTCTTTTATAACTTCGGTTCCTAAAACTATTCAAGACGATCTATTC
* * *
29939468 CTTCGAGCAATTTTTCGAACATTCGATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTC
769 CTTCGAGCAATTTTTCAAACAGTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTC
** *
29939533 AGTTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTATTTACGTAAGAGTTGTTTCTCTCTTC
834 AGTTTGTAAACAAGTTTTGGTCATTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTC
29939598 GTTCTT
899 GTTCTT
29939604 GGACTAATTT
Statistics
Matches: 841, Mismatches: 56, Indels: 37
0.90 0.06 0.04
Matches are distributed among these distances:
902 131 0.16
903 44 0.05
904 131 0.16
907 2 0.00
909 1 0.00
910 2 0.00
911 3 0.00
912 305 0.36
913 9 0.01
922 187 0.22
923 26 0.03
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (906 bp):
GTTCTTGGACGAACTTCCGAACTTGTCAAAAGCTTATTTATGTAAGAATTGTTTCTCTCTTGGTT
CTTGGACGAACATCTAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGT
ATTCATGACAATCCATTCCTTCGAGCTATTTTCCAAACATTCCTTGCTCGAGAAATCGCATCATT
TGGCCTAAATAGTTTGTCATTTTGAAAAATTGATACTTATTTACGTGAAAATTGTTTCTCTCTTT
GTTCTTAGACGAACTTCCGAACATTTTACAATTTTACGAGTTGTTTTATAACTTCGATTCCTTAA
AGTATTCAAAACGATCCATTCCTTCAGGCAATTTTTCGAAGATTTCATGCTCGAGAAATCACATC
ATTTGGTCTAAATAGTTTGTCATTTTTTAAACTGGATTCGGTCTTTCAATTAAAAACTTATTTAC
GTGAGAATAGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTTTCAAACCTTTACGAGTTCT
TTTATAACTTCGGAACCTTAAAGTATTCAAGACGCTTTGAGAATTTTTTGAACATTCCATGCTCG
TAAAATCGCACCGTATGGTCTAAATAGTTTGCCATTTCGTAAACATGTTTTGGTTTTGAATTAAA
AACTTATTTACACAAGAATTGTTTCTCTCTTGGCTATTGGACAAACATCCGAACTTGTCAAACTT
TTGCAATTTCTTTTATAACTTCGGTTCCTAAAACTATTCAAGACGATCTATTCCTTCGAGCAATT
TTTCAAACAGTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCAGTTTGTAAACA
AGTTTTGGTCATTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTCGTTCTTTG
Found at i:29939544 original size:215 final size:216
Alignment explanation
Indices: 29938920--29939829 Score: 1014
Period size: 216 Copynumber: 4.2 Consensus size: 216
29938910 TGAAAAATGT
* * * * * * *
29938920 CTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACTTCCGAACATT-TTACAA-TT
1 CTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAAC-TTGTCA-AACTT
* *
29938983 TTACGAGTTGTTTTATAACTT-GGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGGGCAAT
64 TTACGAGTTCTTTTATAACTTCGGATT-CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* *
29939047 TTTTCGAAGATTTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTTTTAA
128 TTTTCGAACA-TTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCA-TTTTGTAA
** * * *
29939112 ACTGGATTCGGTCTTTCAATTAAAAA
191 ACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * * *
29939138 CTTATTTACGTGAGAATAGTTTCTCTTTTGGTTCTTGGATGAACTTCTAAACTTTTCAAACTTTC
1 CTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACTTTT
**
29939203 ACGAGTTCTTTTATAACTTCGGAACCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-AATTTT
66 ACGAGTTCTTTTATAACTTCGGATTCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * *
29939267 TTGAACATTCCATGCTCGTA-AAATCGCATCGTATGGTCTAAATAGTTTGTCATTTCGTAAACAT
131 TCGAACATTCCATGCTCG-AGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
29939331 GTTTTGGTTTTTGAATT-AAAA
195 GTTTTGGTCTTTGAATTAAAAA
* * *
29939352 CTTATTTACATAAGAATTGTTTTTCTCTTGGCTT-TTGGATGAACATCCGAACTTGTCAAACTTT
1 CTTATTTACATAAGAATTGTTTCTCTCTTGG-TTCTTGGATGAACTTCCAAACTTGTCAAACTTT
* * * * * ** **
29939416 TGCAATTTCTTTTATAACTTTGG-TTCTTGAAACTATTCAAGGTGATTTATTCCTTCGAGCAATT
65 TACGAGTTCTTTTATAACTTCGGATTCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * *
29939480 TTTCGAACATTCGATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCAGTTTGTAAACA
129 TTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
*
29939545 AGTTTTGGTGTTTGAATTAAAAA
194 AGTTTTGGTCTTTGAATTAAAAA
* * * * * * *
29939568 CTTATTTACGTAAGAGTTGTTTCTCTCTTCGTTCTTGGACT-AATTTTCAAACATGTGAAACTTT
1 CTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACTTCCAAACTTGTCAAACTTT
*
29939632 TACGAGTTCTTTTATAACTTCGG-TTCTTGAAAGTATTCAAGACGATCCATTCCTTCGAGAAATT
65 TACGAGTTCTTTTATAACTTCGGATTCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * *
29939696 TTCCAAACGTTTCATGCTCGAGAAATCACATCATTTGGTCAAAATAG-TTATCATTTTGTAAACA
129 TTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * *
29939760 AGTTTTGGACTGTAAATTAAAAG
194 AGTTTTGGTCTTTGAATTAAAAA
* * *
29939783 CTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
1 CTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTC
29939830 TGAACTTCTC
Statistics
Matches: 579, Mismatches: 101, Indels: 27
0.82 0.14 0.04
Matches are distributed among these distances:
213 3 0.01
214 99 0.17
215 172 0.30
216 185 0.32
217 17 0.03
218 100 0.17
219 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.41
Consensus pattern (216 bp):
CTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACTTTT
ACGAGTTCTTTTATAACTTCGGATTCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
TCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
TTTTGGTCTTTGAATTAAAAA
Found at i:29939759 original size:430 final size:433
Alignment explanation
Indices: 29938932--29939842 Score: 1083
Period size: 430 Copynumber: 2.1 Consensus size: 433
29938922 TATTTACGTG
* * * * * * * *
29938932 AGAATTGTTTCTCTCTTTGTTCTTAGACGAACTTCCGAACATT-TTACAA-TTTTACGAGTTGTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC-TTCTCA-AACTTTTGCAATTTCTT
* * *
29938995 TTATAACTTGGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGGGCAATTTTTCGAAGATTT
64 TTATAACTTGGATTCCTTAAACTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTT
* * * **
29939060 CCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTTTTAAACTGGATTCGGTC
129 CCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATGTTTGTAAACAAGATTCGGTC
* * *
29939125 TTTCAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTTTTGGTTCTTGGATGAACTTCTAAAC
194 TTTCAATTAAAAACTTATTTACGTAAGAATAGTTTCTCTCTTCGTTCTTGGATGAACTTCTAAAC
* *
29939190 TTTTCAAACTTTCACGAGTTCTTTTATAACTTCGGAACCTTAAAGTATTCAAGACGATCCATTCC
259 ATGTCAAACTTTCACGAGTTCTTTTATAACTTCGGAACCTTAAAGTATTCAAGACGATCCATTCC
*** * * * *
29939255 TTCGAGAATTTTTTGAACATTCCATGCTCGTAAAATCGCATCGTATGGTCTAAATAGTTTGTCAT
324 TTCGAGAATTTTCCAAACATTCCATGCTCGTAAAATCACATCATATGGTCAAAATAGTTTATCAT
* ** * * *
29939320 TTCGTAAACATGTTTTGGTTTTTGAATTAAAA-CTTATTTACATA
389 TTCGTAAACAAGTTTTGGACTGTAAATTAAAAGCTTAGTTACATA
* * *
29939364 AGAATTGTTTTTCTCTTGGCTT-TTGGATGAACATCCGAACTTGTCAAACTTTTGCAATTTCTTT
1 AGAATTGTTTCTCTCTTGG-TTCTTGGACGAACATCCGAACTTCTCAAACTTTTGCAATTTCTTT
** **
29939428 TATAACTTTGG-TT-CTTGAAACTATTCAAGGTGATTTATTCCTTCGAGCAATTTTTCGAACA-T
65 TATAAC-TTGGATTCCTT-AAACTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATT
* * * * *
29939490 TCGATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCA-GTTTGTAAACAAGTTTTGGT
128 TCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATGTTTGTAAACAAGATTCGGT
* * * * *
29939554 GTTTGAATTAAAAACTTATTTACGTAAGAGTTGTTTCTCTCTTCGTTCTTGGACT-AA-TTTTCA
193 CTTTCAATTAAAAACTTATTTACGTAAGAATAGTTTCTCTCTTCGTTCTTGGA-TGAACTTCT-A
* * **
29939617 AACATGTGAAACTTTTACGAGTTCTTTTATAACTTCGG-TTCTTGAAAGTATTCAAGACGATCCA
256 AACATGTCAAACTTTCACGAGTTCTTTTATAACTTCGGAACCTT-AAAGTATTCAAGACGATCCA
* * *
29939681 TTCCTTCGAGAAATTTTCCAAACGTTTCATGCTCG-AGAAATCACATCATTTGGTCAAAATAG-T
320 TTCCTTCGAG-AATTTTCCAAACATTCCATGCTCGTA-AAATCACATCATATGGTCAAAATAGTT
* *
29939744 TATCATTTTGTAAACAAGTTTTGGACTGTAAATTAAAAGCTTAGTTACATG
383 TATCATTTCGTAAACAAGTTTTGGACTGTAAATTAAAAGCTTAGTTACATA
* *
29939795 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTCTCAAA
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAA
29939843 AACTTATTTA
Statistics
Matches: 403, Mismatches: 64, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
429 6 0.01
430 162 0.40
431 139 0.34
432 90 0.22
433 6 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (433 bp):
AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTGCAATTTCTTTT
ATAACTTGGATTCCTTAAACTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCC
ATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATGTTTGTAAACAAGATTCGGTCTT
TCAATTAAAAACTTATTTACGTAAGAATAGTTTCTCTCTTCGTTCTTGGATGAACTTCTAAACAT
GTCAAACTTTCACGAGTTCTTTTATAACTTCGGAACCTTAAAGTATTCAAGACGATCCATTCCTT
CGAGAATTTTCCAAACATTCCATGCTCGTAAAATCACATCATATGGTCAAAATAGTTTATCATTT
CGTAAACAAGTTTTGGACTGTAAATTAAAAGCTTAGTTACATA
Found at i:29940057 original size:277 final size:277
Alignment explanation
Indices: 29939563--29940119 Score: 762
Period size: 277 Copynumber: 2.0 Consensus size: 277
29939553 TGTTTGAATT
* * **** *
29939563 AAAAACTTATTTACGTAAGAGTTGTTTCTCTCTTCGTTCTTGGACTAATTTTCAAACATGTGAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTCGTTCTTGGACGAACAACCAAACATGTCAAA
* ** *
29939628 CTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAAAGTATTCAAGACGATCCATTCCTTCGAGAA
66 CTTTTACAAGTTCTTTTATAACTTCGGTTCTCAAAAGTATTCAAGACAATCCATTCCTTCGAGAA
* * * *
29939693 ATTTTCCAAACGTTTCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTATCATTTTGTAAA
131 ATTTTCCAAACATTCCATGCTCAAAAAATCACATCATTTGGTCAAAATAGTTATCATTTTGTAAA
*
29939758 CAAGTTTTGGACTGTAAATTAAAAGCTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAC
196 CAAGTTTTGGACTGTAAATTAAAAACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAC
29939823 GAAC-TTCTGAACTTCTC
261 GAACTTTC-GAACTTCTC
* *
29939840 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTT-GCTTCTTGGACGAACAACCGAACTTGTCAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTCG-TTCTTGGACGAACAACCAAACATGTCAA
* * *
29939904 ACTTTTACAATTTCTTTTATAACTTCGGTTC-CAAAAGTATTCAAGATAATCCATTCCTTCTAGA
65 ACTTTTACAAGTTCTTTTATAACTTCGGTTCTCAAAAGTATTCAAGACAATCCATTCCTTCGAG-
** * ** *
29939968 AAATTTT-TGAACATTCCATGCTCAAAAAATCCCATCATTTGGTTTAAATAGTTTGTCATTTTGT
129 AAATTTTCCAAACATTCCATGCTCAAAAAATCACATCATTTGGTCAAAATAG-TTATCATTTTGT
* * * *
29940032 AAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
193 AAACAAGTTTTGGACTGTAAATTAAAAACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTG
*
29940097 GACGAACTTTCGAACTTGTC
258 GACGAACTTTCGAACTTCTC
29940117 AAA
1 AAA
29940120 CTTTCACGAG
Statistics
Matches: 244, Mismatches: 32, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
276 63 0.26
277 178 0.73
278 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (277 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTCGTTCTTGGACGAACAACCAAACATGTCAAA
CTTTTACAAGTTCTTTTATAACTTCGGTTCTCAAAAGTATTCAAGACAATCCATTCCTTCGAGAA
ATTTTCCAAACATTCCATGCTCAAAAAATCACATCATTTGGTCAAAATAGTTATCATTTTGTAAA
CAAGTTTTGGACTGTAAATTAAAAACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAC
GAACTTTCGAACTTCTC
Found at i:29940221 original size:215 final size:215
Alignment explanation
Indices: 29939840--29940334 Score: 717
Period size: 215 Copynumber: 2.3 Consensus size: 215
29939830 TGAACTTCTC
* * **
29939840 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACAACCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
29939905 CTTTTACAATTTCTTTTATAACTTCGGTTCCAAAAGTATTCAAGATAATCCATTCCTTCTAGAAA
66 CTTTCACAAGTTCTTTTATAACTTAGGTTCCAAAAGTATTCAAGACAATCCATTCCTTCTAAAAA
*** * **
29939970 ATTTTTGAACATTCCATGCTCAAAAAATCCCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAA
131 ATTTCCAAACATTCCATGCTCAAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
*
29940035 CAAGTTTTGGTCT-TTAAATT
196 CAAGTTTTGGACTATT-AATT
*
29940055 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
29940120 CTTTCACGAGTTC-TTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAAA
66 CTTTCACAAGTTCTTTTATAACTTAGGTTCC-AAAAGTATTCAAGACAATCCATTCCTTCT-AAA
* * *
29940183 AAATTTCCAAACATTCTATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
129 AAATTTCCAAACATTCCATGCTCAAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
29940248 AACAAGTTTTGGACTATTAATT
194 AACAAGTTTTGGACTATTAATT
* *
29940270 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
29940335 AACTTATTTA
Statistics
Matches: 251, Mismatches: 26, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
214 17 0.07
215 232 0.92
216 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACAAGTTCTTTTATAACTTAGGTTCCAAAAGTATTCAAGACAATCCATTCCTTCTAAAAA
ATTTCCAAACATTCCATGCTCAAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTATTAATT
Found at i:29940281 original size:492 final size:493
Alignment explanation
Indices: 29939348--29940396 Score: 1554
Period size: 492 Copynumber: 2.1 Consensus size: 493
29939338 TTTTTGAATT
* * *
29939348 AAAACTTATTTACATAAGAATTGTTTTTCTCTTGGCTT-TTGGATGAACATCCGAACTTGTCAAA
1 AAAACTTATTTACGTAAGAATTGTTTCTCTCTT-GCTTCTTGGACGAACATCCGAACTTGTCAAA
* * ** * * ** *
29939412 CTTTTGCAATTTCTTTTATAACTTTGGTTCTTGAAACTATTCAAGGTGATTTATTCCTTCGAGCA
65 CTTTTACAATTTCTTTTATAACTTCGGTTCTCAAAACTATTCAAGATAATCCATTCCTTCGAGAA
* *** *
29939477 ATTTTTCGAACATTCGATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCAGTTTGTAA
130 ATTTTTCGAACATTCCATGCTCAAAAAATCCCATAATTTGGTCTAAATAGTTTGTCAGTTTGTAA
* * *
29939542 ACAAGTTTTGGTGTTTGAATTAAAAACTTATTTACGTAAGAGTTGTTTCTCTCTTCGTTCTTGGA
195 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTCGTTCTTGGA
* * * * *
29939607 CTAATTTTCAAACATGTGAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAAAGTATTCAA
260 CGAACTTTCAAACATGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCTTGAAAGTATTCAA
* * *
29939672 GACGATCCATTCCTTCGAGAAATTTTCCAAACGTTTCATGCTCGAGAAATCACATCATTTGGTCA
325 GACGATCCATTCCTTCGAAAAAATTTCCAAACATTTCATGCTCGAGAAATCACATCATTTGGTCA
*
29939737 AAATAGTTATCATTTTGTAAACAAGTTTTGGACTGTAAATTAAAAGCTTAGTTACATGAGAATTG
390 AAATAGTTATCATTTTGTAAACAAGTTTTGGACTATAAATTAAAAGCTTAGTTACATGAGAATTG
*
29939802 TTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTCTCA
455 TTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCA
*
29939841 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACAACCGAACTTGTCAAAC
1 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAAC
* *
29939906 TTTTACAATTTCTTTTATAACTTCGGTTC-CAAAAGTATTCAAGATAATCCATTCCTTCTAGAAA
66 TTTTACAATTTCTTTTATAACTTCGGTTCTCAAAACTATTCAAGATAATCCATTCCTTCGAG-AA
* * *
29939970 ATTTTT-GAACATTCCATGCTCAAAAAATCCCATCATTTGGTTTAAATAGTTTGTCATTTTGTAA
130 ATTTTTCGAACATTCCATGCTCAAAAAATCCCATAATTTGGTCTAAATAGTTTGTCAGTTTGTAA
* *
29940034 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
195 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTCGTTCTTGGA
* *
29940099 CGAACTTTCGAACTTGTCAAACTTTCACGAGTTC-TTTATAACTTAGGTTCCTT-AAAGTATTCA
260 CGAACTTTCAAACATGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTT-CTTGAAAGTATTCA
*
29940162 AGACGATCCATTCCTTTGAAAAAATTTCCAAACA-TTCTATGCTCGAGAAATCACATCATTTGGT
324 AGACGATCCATTCCTTCGAAAAAATTTCCAAACATTTC-ATGCTCGAGAAATCACATCATTTGGT
* * *
29940226 CAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTATTAATTAATAA-CTTAGTTACGTGAGA
388 CAAAATAG-TTATCATTTTGTAAACAAGTTTTGGACTATAAATTAA-AAGCTTAGTTACATGAGA
*
29940290 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
451 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCA
* * * *
29940333 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAA
29940397 AACTTATTTA
Statistics
Matches: 500, Mismatches: 50, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
490 3 0.01
491 88 0.18
492 317 0.63
493 92 0.18
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (493 bp):
AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTTACAATTTCTTTTATAACTTCGGTTCTCAAAACTATTCAAGATAATCCATTCCTTCGAGAAA
TTTTTCGAACATTCCATGCTCAAAAAATCCCATAATTTGGTCTAAATAGTTTGTCAGTTTGTAAA
CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTCGTTCTTGGAC
GAACTTTCAAACATGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCTTGAAAGTATTCAAG
ACGATCCATTCCTTCGAAAAAATTTCCAAACATTTCATGCTCGAGAAATCACATCATTTGGTCAA
AATAGTTATCATTTTGTAAACAAGTTTTGGACTATAAATTAAAAGCTTAGTTACATGAGAATTGT
TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCA
Found at i:29940370 original size:62 final size:62
Alignment explanation
Indices: 29940273--29940520 Score: 433
Period size: 62 Copynumber: 4.0 Consensus size: 62
29940263 ATTAATTAAT
* *
29940273 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
29940335 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
*
29940397 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
29940459 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTTTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
29940521 CTGTTACGAT
Statistics
Matches: 178, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 178 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:29941047 original size:61 final size:60
Alignment explanation
Indices: 29940982--29941162 Score: 236
Period size: 62 Copynumber: 3.0 Consensus size: 60
29940972 AAGTTTGATA
* **
29940982 AGTTCGGATGTTCATCCAAGAACCAAGAGAGAACAATTCTTATATAAATAAGTTTTTGACC
1 AGTTCGGATGTTCATCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTTGA-C
* * *
29941043 AGTTCGGATGTTCATCCATGAACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGAC
1 AGTTCGGATGTTCATCCAAGAACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTGAC
* * * *
29941104 ATGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAACCAAGTCTCACGTAAATAAGTTTTT
1 A-GTTCGGATGTTCATCCAAGAACCAAGAGAGAA-CAATTCTCACGTAAATAAGTTTTT
29941163 AATTCAACGA
Statistics
Matches: 104, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
61 33 0.32
62 71 0.68
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (60 bp):
AGTTCGGATGTTCATCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTTGAC
Found at i:29941412 original size:62 final size:62
Alignment explanation
Indices: 29941315--29941500 Score: 300
Period size: 62 Copynumber: 3.0 Consensus size: 62
29941305 ATTGTAAAAG
*
29941315 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29941377 TTTGACAAGTTCGGATGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
29941439 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCGCGTAACTAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29941501 ATTAATTAAC
Statistics
Matches: 113, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 113 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:29941466 original size:341 final size:340
Alignment explanation
Indices: 29940810--29941719 Score: 1323
Period size: 341 Copynumber: 2.7 Consensus size: 340
29940800 AAATCAACAT
* * *
29940810 GTAAATAAGTTTTTAATTCAGCGACCAAAACTTGTTTACAAAA-AGACAATCTATTTAGACCAAA
1 GTAAATAAGTTTTTAATTCAACGATCAAAACTTGTTTACAAAAGAG-CAAACTATTTAGACCAAA
* *
29940874 TTATGCGATTTCTAGAGCATGGAATGTTCAAAAAATTGCT-TAAAGGAATGG-ATCATCTTGAAT
65 TTATGCGATTTCTCGAGCATGGAATGTTC-AAAAATTGCTCGAAA-GAATGGAATCATCTTGAAT
* * * * *
29940937 ACTTTCAGGAACCGAAGTTAAAAAAGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCATCCAAG
128 ACTTTCAGGAACCGAAGTTATAAAAGAAATTGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAG
** * *
29941002 AACCAAGAGAG-AACAATTCTTATATAAATAAGTTTTTGACCAGTTCGGATGTTCATCCATGAAC
193 AACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGATGTTCATCCAAGAAC
* *
29941066 TAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACATGTTTGGAAGTTCGTCCAAGAACCAA
258 TAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAA
*
29941131 GAGAGAACCAAGTCTCAC
323 GAGAGAAACAAGTCTCAC
29941149 GTAAATAAGTTTTTAATTCAACGATCAAAACTTGTTTACAAAAGAGCAAACTATTTAGACCAAAT
1 GTAAATAAGTTTTTAATTCAACGATCAAAACTTGTTTACAAAAGAGCAAACTATTTAGACCAAAT
* * *
29941214 TATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGAATCATCTTGATTGC
66 TATGCGATTTCTCGAGCATGGAATGTTC-AAAAATTGCTCGAAAGAATGGAATCATCTTGAATAC
*
29941279 TTTTAGGAACCGAAGTTATAAAAGAAATTGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAA
130 TTTCAGGAACCGAAGTTATAAAAGAAATTGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAA
* **
29941344 CCAAGAGAGAAACAATTCTAACGTAAATAAGTTTTTGACAAGTTCGGATGTTTGTCCAAGAACTA
195 CCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGATGTTCATCCAAGAACTA
*
29941409 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGA
260 AGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGA
* *
29941474 GAGAAACAATTCTCGC
325 GAGAAACAAGTCTCAC
* * *
29941490 GTAACTAAGTTATTAATT-AAC-AGTCCAAAACTTGTTTACAAAATGA-CAAACTATTTTGACCA
1 GTAAATAAGTTTTTAATTCAACGA-T-CAAAACTTGTTTACAAAA-GAGCAAACTATTTAGACCA
* * * * * * *
29941552 AATGATGTGATTTCTCGAGCATCGAATGCTCAGAAAATTGCTCGAAGGAAT-AAATCGTCTTGAA
63 AATTATGCGATTTCTCGAGCATGGAATGTTCA-AAAATTGCTCGAAAGAATGGAATCATCTTGAA
* * * *
29941616 TACTTTCAGGAACCGAAGTTATAAAAGAAATTGCAAAAGTTTGACAAGGTTGAAAGTTCGTCCAA
127 TACTTTCAGGAACCGAAGTTATAAAAGAAATTGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAA
29941681 GAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
192 GAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
29941720 AATTCAAAAA
Statistics
Matches: 516, Mismatches: 47, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
339 102 0.20
340 197 0.38
341 215 0.42
342 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (340 bp):
GTAAATAAGTTTTTAATTCAACGATCAAAACTTGTTTACAAAAGAGCAAACTATTTAGACCAAAT
TATGCGATTTCTCGAGCATGGAATGTTCAAAAATTGCTCGAAAGAATGGAATCATCTTGAATACT
TTCAGGAACCGAAGTTATAAAAGAAATTGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAAC
CAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGATGTTCATCCAAGAACTAA
GAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAG
AGAAACAAGTCTCAC
Found at i:29941928 original size:224 final size:223
Alignment explanation
Indices: 29941439--29941943 Score: 555
Period size: 216 Copynumber: 2.3 Consensus size: 223
29941429 TAAATAAGTT
* ** * *
29941439 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCGCGTAACTAAGTTATT
1 TTTGACAAG-TTGG-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
** * * * * * **
29941504 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCG
64 AATTAACAAACAAAAACATATTTACAAAATGACAAACTATTTAGACCAAACGATACGATTTCTCG
* * *
29941569 AGCATCGAATGCTCAGAAAATTGCTCGAAGGAATAAATCGTCTTGAATACTTTCAGGAACCGAAG
129 AGCATCGAATGCTCAAAAAATTGCTCGAAGGAATAAATCGTCCTGAATACTTTAAGGAACCGAAG
* *
29941634 TTATAAAAGAAATTGCAAAAGTTTGACAAG
194 TTATAAAAGAAATCGCAAAAGTTTGAAAAG
*
29941664 GTTG--AA-----AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAA
1 TTTGACAAGTTGGAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAA
* *
29941722 TTCAA-AAACAAAAACATATTTACGAAATGACAAA-TCATTTAGACCATACGATACGATTT-TAC
66 TT-AACAAACAAAAACATATTTACAAAATGACAAACT-ATTTAGACCAAACGATACGATTTCT-C
* * ** ***
29941784 GAGCATGGAATGTTCAAAAAATT-CTCGAAGGAATGGATCGTCCTGAATACTTTAAGGTTTCGAA
128 GAGCATCGAATGCTCAAAAAATTGCTCGAAGGAATAAATCGTCCTGAATACTTTAAGGAACCGAA
* *
29941848 GTTATAAAAGAACTCGTAAAAGTTTGAAAAG
193 GTTATAAAAGAAATCGCAAAAGTTTGAAAAG
* ** *
29941879 TTTGACAAGTTCGGATGTTCGTCCAACAACCAAGAGAGAAACAATTCTTACAAAAATAACTTTTT
1 TTTGACAAGTT-GGA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
29941944 GACAAGTTCG
Statistics
Matches: 232, Mismatches: 36, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
215 66 0.28
216 111 0.48
217 4 0.02
223 3 0.01
224 45 0.19
225 3 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (223 bp):
TTTGACAAGTTGGAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAA
TTAACAAACAAAAACATATTTACAAAATGACAAACTATTTAGACCAAACGATACGATTTCTCGAG
CATCGAATGCTCAAAAAATTGCTCGAAGGAATAAATCGTCCTGAATACTTTAAGGAACCGAAGTT
ATAAAAGAAATCGCAAAAGTTTGAAAAG
Found at i:29941998 original size:62 final size:62
Alignment explanation
Indices: 29941879--29942005 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
29941869 GTTTGAAAAG
* *
29941879 TTTGACAAGTTCGGATGTTCGTCCAACAACCAAGAGAGAAACAATTCTTACAAAAATAACTT
1 TTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACAAAAATAACTT
* * ** *
29941941 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACAAAAATAACTT
29942003 TTT
1 TTT
29942006 AATTCAATGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACAAAAATAACTT
Found at i:29942250 original size:63 final size:63
Alignment explanation
Indices: 29942157--29942346 Score: 229
Period size: 63 Copynumber: 3.0 Consensus size: 63
29942147 ATCGTAAAAG
* * * * * *
29942157 TTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTT
* * * * * *
29942220 TTTGACAAGTTCGAAAGTTCATCTAAGAACCAGGAGAAAAACAATACTGACGTGAATAAG-TT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTT
* * * *
29942282 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATCCTCATGTAAATAAGTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTT
29942345 TT
1 TT
29942347 AATTCAACGA
Statistics
Matches: 105, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
62 52 0.50
63 53 0.50
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (63 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTT
Found at i:29942310 original size:62 final size:62
Alignment explanation
Indices: 29942157--29942346 Score: 227
Period size: 62 Copynumber: 3.0 Consensus size: 62
29942147 ATCGTAAAAG
* * * * * *
29942157 TTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAG-TT
* * * * * *
29942220 TTTGACAAGTTCGAAAGTTCATCTAAGAACCAGGAGAAAAACAATACTGACGTGAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
* * * *
29942282 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATCCTCATGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
29942344 TTT
1 TTT
29942347 AATTCAACGA
Statistics
Matches: 106, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
62 57 0.54
63 49 0.46
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
Found at i:29942502 original size:341 final size:341
Alignment explanation
Indices: 29941879--29942901 Score: 1543
Period size: 341 Copynumber: 3.0 Consensus size: 341
29941869 GTTTGAAAAG
* * * * ** *
29941879 TTTGACAAGTTCGGATGTTCGTCCAACAACCAAGAGAGAAACAATTCTTACAAAAATAACTTTTT
1 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
29941944 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
*
29942009 TCAATGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGC
131 TCAACGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGC
* *
29942074 ATGGAATGTTCCAAAAATTGCTC-AAAGGAATGGATCATCTTGAATACTTTCAGGAACTGAAGTT
196 ATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGATCATCTTGAATACTTTCAGGAACCGAAGTT
*
29942138 ATAAAAGAAATCGTAAAAGTTTGATAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
260 ATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
*
29942203 CTTACATAAATAAGTTT
325 CTTACGTAAATAAGTTT
* * * * * * *
29942220 TTTGACAAGTTCGAAAGTTCATCTAAGAACCAGGAGAAAAACAATACTGACGTGAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
* * * *
29942285 GACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATCCTCATGTAAATAAGTTTTTAAT
66 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
*
29942350 TCAACGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGC
131 TCAACGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGC
* * *
29942415 TTGGAATGTTTGAAAAATTGCTCGAAAAAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTA
196 ATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTA
*
29942480 TAAAAGAAATTGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
261 TAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
29942545 TTACGTAAATAAG-TT
326 TTACGTAAATAAGTTT
* * *
29942560 TTTGACAAGTTCGGATGTT-AGTCCAAGAACCAAGAG-AGAACAATTCTCAGGTAAATAAGGTTT
1 TTTGACAAGTTCGGATGTTCA-TCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTT
* * *
29942623 TGACAAGTTTGGAAGTTCGTCGAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
65 TGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAA
** * *
29942688 TTCAAAC-ACCAAAACTTGTTTACAAACTGACGAACTATTTAGACCAAATTATGTGATTTCCCGA
130 TTC-AACGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGA
* * * * *
29942752 GCATCGAATATTCGAAAAATTGCTCGAAGGAGTAGATCATCTTGAATACTTTCAGGAACCGAAGT
194 GCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGT
* * * *
29942817 CATAAAAGAAATCGAAAAAGTTTGACAAGTTCTGATGTTCGTCCAAGAGCCAAGAGAGAAACAAT
259 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
* *
29942882 ACTTACGTAAATAAATTT
324 TCTTACGTAAATAAGTTT
29942900 TT
1 TT
29942902 AATTCAAACA
Statistics
Matches: 614, Mismatches: 64, Indels: 9
0.89 0.09 0.01
Matches are distributed among these distances:
339 265 0.43
340 39 0.06
341 307 0.50
342 3 0.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.27
Consensus pattern (341 bp):
TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
TCAACGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGC
ATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTA
TAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
TTACGTAAATAAGTTT
Found at i:29942649 original size:61 final size:62
Alignment explanation
Indices: 29942498--29942685 Score: 306
Period size: 62 Copynumber: 3.0 Consensus size: 62
29942488 ATTGTAAAAG
*
29942498 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29942560 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAG-AACAATTCTCAGGTAAATAAGGT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
29942621 TTTGACAAGTTTGGAAGTTCGTCGAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
29942683 TTT
1 TTT
29942686 AATTCAAACA
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
61 54 0.47
62 61 0.53
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Done.