Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 95 of 135
Found at i:32269396 original size:11 final size:11
Alignment explanation
Indices: 32269380--32269407 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
32269370 GTTATATGGG
32269380 TAATTTTGAGA
1 TAATTTTGAGA
32269391 TAATTTTGAGA
1 TAATTTTGAGA
32269402 TAATTT
1 TAATTT
32269408 GAAGAAGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (11 bp):
TAATTTTGAGA
Found at i:32271194 original size:37 final size:37
Alignment explanation
Indices: 32271153--32271240 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 37
32271143 GACAGTCTTA
*
32271153 GGTGCATTCTGGAAATAATAATGCGGCGACAACTTTG
1 GGTGCAATCTGGAAATAATAATGCGGCGACAACTTTG
* ** * *
32271190 GGTGCAATCTGGAAGTGCTCATGCGGCGACAATTTTG
1 GGTGCAATCTGGAAATAATAATGCGGCGACAACTTTG
*
32271227 GGTGCTAATTTGGA
1 GGTGC-AATCTGGA
32271241 TCATATTTTG
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 36 0.84
38 7 0.16
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (37 bp):
GGTGCAATCTGGAAATAATAATGCGGCGACAACTTTG
Found at i:32273236 original size:22 final size:24
Alignment explanation
Indices: 32273202--32273245 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
32273192 AATTCTTTTG
* *
32273202 TTTCTACTCATTTTTCTTTTTGAT
1 TTTCTACTCATTTCTCTCTTTGAT
32273226 TTTCT-CT-ATTTCTCTCTTTG
1 TTTCTACTCATTTCTCTCTTTG
32273246 TAGCTTAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 11 0.61
23 2 0.11
24 5 0.28
ACGTcount: A:0.09, C:0.20, G:0.05, T:0.66
Consensus pattern (24 bp):
TTTCTACTCATTTCTCTCTTTGAT
Found at i:32279445 original size:15 final size:14
Alignment explanation
Indices: 32279427--32279469 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
32279417 AATTTTTAAC
*
32279427 TTAGATTAATTTAGT
1 TTAGATTAATTT-CT
32279442 TTAGATTAA-TTCT
1 TTAGATTAATTTCT
32279455 TTAGATTAATATTCT
1 TTAGATTAAT-TTCT
32279470 CCACAAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 10 0.40
14 2 0.08
15 13 0.52
ACGTcount: A:0.33, C:0.05, G:0.09, T:0.53
Consensus pattern (14 bp):
TTAGATTAATTTCT
Found at i:32283199 original size:48 final size:48
Alignment explanation
Indices: 32283147--32283242 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
32283137 AGTAAACACC
32283147 TCACTTTATACATTACATAACAAAACATACAAGTTTAACATGTATACA
1 TCACTTTATACATTACATAACAAAACATACAAGTTTAACATGTATACA
32283195 TCACTTTATACATTACATAACAAAACATACAAGTTTAACATGTATACA
1 TCACTTTATACATTACATAACAAAACATACAAGTTTAACATGTATACA
32283243 CATATTTTTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.31
Consensus pattern (48 bp):
TCACTTTATACATTACATAACAAAACATACAAGTTTAACATGTATACA
Found at i:32283683 original size:36 final size:36
Alignment explanation
Indices: 32283631--32283725 Score: 163
Period size: 36 Copynumber: 2.6 Consensus size: 36
32283621 TGAAATGGCC
*
32283631 TTATGCTCTAATCGAGACATAAGCGATCAATTAGCA
1 TTATGCTCTAACCGAGACATAAGCGATCAATTAGCA
*
32283667 TTATGCTCTAACCGAGACATAAGCGATCACTTAGCA
1 TTATGCTCTAACCGAGACATAAGCGATCAATTAGCA
*
32283703 TTATGCTCTAACCGAGACGTAAG
1 TTATGCTCTAACCGAGACATAAG
32283726 TAAATACATA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (36 bp):
TTATGCTCTAACCGAGACATAAGCGATCAATTAGCA
Found at i:32283738 original size:36 final size:35
Alignment explanation
Indices: 32283662--32283828 Score: 140
Period size: 36 Copynumber: 4.7 Consensus size: 35
32283652 AGCGATCAAT
* * ** *
32283662 TAGCATTATGCTCTAACCGAGACATAAGCGATCACT
1 TAGCAATATGCTCTAACCGAGACGTAAGAAAT-ACA
*
32283698 TAGCATTATGCTCTAACCGAGACGTAAGTAAATACA
1 TAGCAATATGCTCTAACCGAGACGTAAG-AAATACA
* * * *
32283734 TAGCAATATGCTCTAATCGAGACGTATGCAACTTCA
1 TAGCAATATGCTCTAACCGAGACGTAAG-AAATACA
* * * * *
32283770 TAGAAATACGCTCTAACCGAGATGTATG--CTACA
1 TAGCAATATGCTCTAACCGAGACGTAAGAAATACA
* *
32283803 TAGCAATACGCTCTAACTGAGACGTA
1 TAGCAATATGCTCTAACCGAGACGTA
32283829 TGCAACATCA
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
33 27 0.24
36 83 0.74
37 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.25
Consensus pattern (35 bp):
TAGCAATATGCTCTAACCGAGACGTAAGAAATACA
Found at i:32283825 original size:69 final size:70
Alignment explanation
Indices: 32283729--32283934 Score: 244
Period size: 69 Copynumber: 3.0 Consensus size: 70
32283719 ACGTAAGTAA
* * *
32283729 ATACATAGCAATATGCTCTAATCGAGACGTATGCAACTTCATAGAAATACGCTCTAACCGAGATG
1 ATACATAGCAATACGCTCTAATCGAGACGTATGCAACATCATAGAAATACGCTCTAACCGAGATA
32283794 TATGC
66 TATGC
* *
32283799 -TACATAGCAATACGCTCTAA-CTGAGACGTATGCAACATCATAGTAATACGCT-T---TGAGAT
1 ATACATAGCAATACGCTCTAATC-GAGACGTATGCAACATCATAGAAATACGCTCTAACCGAGAT
32283858 ATATGC
65 ATATGC
* * * * *
32283864 AACATCATAGTAATACGCTCTAATCGGGATGTATGCAACATCATAGCAATACGCTCTAACCGAGA
1 -ATA-CATAGCAATACGCTCTAATCGAGACGTATGCAACATCATAGAAATACGCTCTAACCGAGA
*
32283929 CATATG
64 TATATG
32283935 TCTTCGAAAG
Statistics
Matches: 115, Mismatches: 12, Indels: 16
0.80 0.08 0.11
Matches are distributed among these distances:
65 10 0.09
67 1 0.01
68 46 0.40
69 49 0.43
72 9 0.08
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (70 bp):
ATACATAGCAATACGCTCTAATCGAGACGTATGCAACATCATAGAAATACGCTCTAACCGAGATA
TATGC
Found at i:32283848 original size:36 final size:36
Alignment explanation
Indices: 32283698--32283934 Score: 206
Period size: 36 Copynumber: 6.8 Consensus size: 36
32283688 AGCGATCACT
* * * * *
32283698 TAGCATTATGCTCTAACCGAGACGTAAGTAA-ATACA
1 TAGCAATACGCTCTAACTGAGACGTATGCAACAT-CA
* *
32283734 TAGCAATATGCTCTAA-TCGAGACGTATGCAACTTCA
1 TAGCAATACGCTCTAACT-GAGACGTATGCAACATCA
* * * *
32283770 TAGAAATACGCTCTAACCGAGATGTATGC--TA-CA
1 TAGCAATACGCTCTAACTGAGACGTATGCAACATCA
32283803 TAGCAATACGCTCTAACTGAGACGTATGCAACATCA
1 TAGCAATACGCTCTAACTGAGACGTATGCAACATCA
* **
32283839 TAGTAATACGCT-T---TGAGATATATGCAACATCA
1 TAGCAATACGCTCTAACTGAGACGTATGCAACATCA
* * *
32283871 TAGTAATACGCTCTAA-TCGGGATGTATGCAACATCA
1 TAGCAATACGCTCTAACT-GAGACGTATGCAACATCA
* *
32283907 TAGCAATACGCTCTAACCGAGACATATG
1 TAGCAATACGCTCTAACTGAGACGTATG
32283935 TCTTCGAAAG
Statistics
Matches: 165, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
32 29 0.18
33 29 0.18
35 3 0.02
36 103 0.62
37 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (36 bp):
TAGCAATACGCTCTAACTGAGACGTATGCAACATCA
Found at i:32291469 original size:17 final size:17
Alignment explanation
Indices: 32291436--32291498 Score: 81
Period size: 17 Copynumber: 3.6 Consensus size: 17
32291426 CATTAAATTA
32291436 CAATGACAAATGAAAATG
1 CAATGAC-AATGAAAATG
*
32291454 CAATGACAATGCAAATG
1 CAATGACAATGAAAATG
* *
32291471 CAGTGACAATTAAAATG
1 CAATGACAATGAAAATG
*
32291488 TAATGACAATG
1 CAATGACAATG
32291499 GGAATGTGAT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
17 31 0.82
18 7 0.18
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (17 bp):
CAATGACAATGAAAATG
Found at i:32307403 original size:37 final size:37
Alignment explanation
Indices: 32307323--32307430 Score: 130
Period size: 37 Copynumber: 2.9 Consensus size: 37
32307313 ACATGTCGCT
* *
32307323 GCATGAGCACTTCTAGATTATGC-CCAAAAATTATCGTC
1 GCATGAGCACTTCTA-ATT-TGCACCTAAAATTGTCGTC
* *
32307361 ACATGAGCACTTCTAAATTGCACCTAAAATTGTCGTC
1 GCATGAGCACTTCTAATTTGCACCTAAAATTGTCGTC
* *
32307398 GCATGAGCACTTCCAATTTGCA-CTAAAACTGTC
1 GCATGAGCACTTCTAATTTGCACCTAAAATTGTC
32307431 ACCGCAGGAA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
36 13 0.21
37 34 0.56
38 14 0.23
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (37 bp):
GCATGAGCACTTCTAATTTGCACCTAAAATTGTCGTC
Found at i:32307509 original size:38 final size:37
Alignment explanation
Indices: 32307452--32307531 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 37
32307442 ATTTTTGGAA
* * * *
32307452 TGCACCCAAGACTGTCACTGTATAAATATTCTTCAAAT
1 TGCACCCAAAACTATCACTGCATAAATATTCCTC-AAT
* *
32307490 TGCATCCAAAACTATCACTGCATAAGTATTCCTCAAT
1 TGCACCCAAAACTATCACTGCATAAATATTCCTCAAT
32307527 TGCAC
1 TGCAC
32307532 TTAGGAATGT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
37 7 0.20
38 28 0.80
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (37 bp):
TGCACCCAAAACTATCACTGCATAAATATTCCTCAAT
Found at i:32311980 original size:37 final size:37
Alignment explanation
Indices: 32311939--32312069 Score: 133
Period size: 37 Copynumber: 3.6 Consensus size: 37
32311929 TTTAATCCAG
* *
32311939 AATTGCGCCC-AAACATGTCGCTGCATGAGCACTTTTA
1 AATTGCGCCCAAAAC-TGTCGCAGCATGAGCACTTCTA
* * *
32311976 AATTGCGCCCAAAACTATCACCA-AATGAGCACTTCTA
1 AATTGCGCCCAAAACTGTC-GCAGCATGAGCACTTCTA
* * *
32312013 GATTGCGCCAAAAACTGTCGCAGCATGAGCACTTCCA
1 AATTGCGCCCAAAACTGTCGCAGCATGAGCACTTCTA
* *
32312050 GATTGC-ACCAAAACTGTCGC
1 AATTGCGCCCAAAACTGTCGC
32312070 CGTAGGAATA
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
36 14 0.18
37 59 0.76
38 5 0.06
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (37 bp):
AATTGCGCCCAAAACTGTCGCAGCATGAGCACTTCTA
Found at i:32326288 original size:19 final size:19
Alignment explanation
Indices: 32326260--32326313 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
32326250 ACTTACAACC
*
32326260 CAAA-TATAATAATAATTA
1 CAAAGTATAATAATAAATA
*
32326278 CAAAGTATAATAA-AAATC
1 CAAAGTATAATAATAAATA
*
32326296 CAAAAGTAAAATAATAAA
1 C-AAAGTATAATAATAAA
32326314 ATAAAATAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 8 0.27
19 19 0.63
20 3 0.10
ACGTcount: A:0.65, C:0.07, G:0.04, T:0.24
Consensus pattern (19 bp):
CAAAGTATAATAATAAATA
Found at i:32336941 original size:25 final size:23
Alignment explanation
Indices: 32336897--32336946 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
32336887 TTAACTTGAT
32336897 TTTTTTAGTTTAAATCGAATTAAA
1 TTTTTTAGTTTAAATCGAA-TAAA
*
32336921 TTTTTTA-TTTCAAATTTGAATAAA
1 TTTTTTAGTTT-AAA-TCGAATAAA
32336945 TT
1 TT
32336947 AAATATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 3 0.13
24 16 0.70
25 4 0.17
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.54
Consensus pattern (23 bp):
TTTTTTAGTTTAAATCGAATAAA
Found at i:32342952 original size:195 final size:192
Alignment explanation
Indices: 32342524--32342953 Score: 490
Period size: 194 Copynumber: 2.2 Consensus size: 192
32342514 CAGCTCACAG
* * ** * * * * *
32342524 GAGCTATCGAGAACTCGCAACATATACGAAACCCCAACCATCGGTACGGTGTCTGTCTGTAAACT
1 GAGCTATCGAGGACTCGCAACATATGCGGTACCTCAGCCATCGATACGGTATCTGTCTATAAACT
* * *
32342589 GTCCCTTAATGATCTGCTCACACGAGTTGTAAAAAATATGCGTTCAAGCATAAATCCCAACCATC
66 GTCCCTTAACGATCTGCTCACACGAGCTGTAAAAAATATGCCTTCAAGCATAAATCCCAACCATC
* * * * *
32342654 GCAGGGCCTATAATCCATTTTGGGTATCATATCTCTTTTTTGACTCATGATGCTACTCACAC
131 GCAGGGCCTACAATCCATTTTGGGAATCATATCTCTTTCTCGACTCATGATGCTACTCAAAC
* * * * *
32342716 GAGCTGTTGAGGACTCGTAACATATGTGGTACCTCAGCCATCGATACGGTATTTGTGC-ATATAA
1 GAGCTATCGAGGACTCGCAACATATGCGGTACCTCAGCCATCGATACGGTATCTGT-CTATA-AA
* * * * *
32342780 TTGTTCCC-TAACGATGCTGCTCACACGAGCTGTCAAGAATATGCACTT-ATGCATAAATCCCAG
64 CTG-TCCCTTAACGAT-CTGCTCACACGAGCTGTAAAAAATATGC-CTTCAAGCATAAATCCCAA
* * *
32342843 CCATCGTAGGGCCTACAATCCATTCTT-GGAATCATTTCTCATTTCTCGGCTCATGATGCTACTC
126 CCATCGCAGGGCCTACAATCCATT-TTGGGAATCATATCTC-TTTCTCGACTCATGATGCTACTC
*
32342907 AAAT
189 AAAC
32342911 GAGCTATCGAGGACTCGCAACATATGCGGTACCTCAGCCATCG
1 GAGCTATCGAGGACTCGCAACATATGCGGTACCTCAGCCATCG
32342954 CGTCGGTTTT
Statistics
Matches: 196, Mismatches: 35, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
192 45 0.23
193 11 0.06
194 75 0.38
195 65 0.33
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (192 bp):
GAGCTATCGAGGACTCGCAACATATGCGGTACCTCAGCCATCGATACGGTATCTGTCTATAAACT
GTCCCTTAACGATCTGCTCACACGAGCTGTAAAAAATATGCCTTCAAGCATAAATCCCAACCATC
GCAGGGCCTACAATCCATTTTGGGAATCATATCTCTTTCTCGACTCATGATGCTACTCAAAC
Found at i:32343647 original size:20 final size:18
Alignment explanation
Indices: 32343609--32343647 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
32343599 AAAACGAACT
*
32343609 TAAAAACATAAAAATTAC
1 TAAAAACAGAAAAATTAC
32343627 TAAAAACAGACAAAATCTAC
1 TAAAAACAGA-AAAAT-TAC
32343647 T
1 T
32343648 CACCCAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 5 0.28
20 4 0.22
ACGTcount: A:0.62, C:0.15, G:0.03, T:0.21
Consensus pattern (18 bp):
TAAAAACAGAAAAATTAC
Found at i:32349226 original size:7 final size:7
Alignment explanation
Indices: 32349202--32349234 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
32349192 ACTAACTTTT
32349202 AATTCAA
1 AATTCAA
32349209 TAATT-AA
1 -AATTCAA
32349216 AATTCAA
1 AATTCAA
32349223 AATTCAA
1 AATTCAA
32349230 AATTC
1 AATTC
32349235 CATATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 4 0.17
7 16 0.67
8 4 0.17
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (7 bp):
AATTCAA
Found at i:32352384 original size:21 final size:21
Alignment explanation
Indices: 32352358--32352406 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
32352348 AGATGCAACC
32352358 ACAATCTCGATTATAGCCACA
1 ACAATCTCGATTATAGCCACA
32352379 ACAATCTCGATTATAGCCACA
1 ACAATCTCGATTATAGCCACA
*
32352400 ATAATCT
1 ACAATCT
32352407 GTGCTGCCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.39, C:0.27, G:0.08, T:0.27
Consensus pattern (21 bp):
ACAATCTCGATTATAGCCACA
Found at i:32366443 original size:22 final size:23
Alignment explanation
Indices: 32366415--32366465 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
32366405 AATTTTGTCA
32366415 ATTTTAACTTG-TAT-TCAAAAAT
1 ATTTTAACTTGTTATATC-AAAAT
*
32366437 ATTTTAATTTGTTATATCAAAAT
1 ATTTTAACTTGTTATATCAAAAT
32366460 ATTTTA
1 ATTTTA
32366466 TCAAATAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 10 0.38
23 14 0.54
24 2 0.08
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (23 bp):
ATTTTAACTTGTTATATCAAAAT
Found at i:32366580 original size:22 final size:22
Alignment explanation
Indices: 32366550--32366593 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
32366540 AATGCTCCCC
32366550 CTTAATAAAAGACATTTTGAAT
1 CTTAATAAAAGACATTTTGAAT
*
32366572 CTTACTAAAAGACATTTTGAAT
1 CTTAATAAAAGACATTTTGAAT
32366594 ATAAGACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (22 bp):
CTTAATAAAAGACATTTTGAAT
Found at i:32372722 original size:3 final size:3
Alignment explanation
Indices: 32372714--32372741 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
32372704 CATAGTCATG
32372714 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
32372742 TATTTGAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:32377730 original size:5 final size:5
Alignment explanation
Indices: 32377720--32377764 Score: 65
Period size: 5 Copynumber: 8.8 Consensus size: 5
32377710 ATATAAATAT
32377720 TTTTC TTTTC TTTTTC TTTTC TTTTC TTTTC TTTTTC TTTT- TTTT
1 TTTTC TTTTC -TTTTC TTTTC TTTTC TTTTC -TTTTC TTTTC TTTT
32377765 ATATGTGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.11
5 24 0.63
6 10 0.26
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTTC
Found at i:32377735 original size:11 final size:11
Alignment explanation
Indices: 32377719--32377764 Score: 78
Period size: 11 Copynumber: 4.4 Consensus size: 11
32377709 AATATAAATA
32377719 TTTTTCTTTTC
1 TTTTTCTTTTC
32377730 TTTTTCTTTTC
1 TTTTTCTTTTC
32377741 -TTTTCTTTTC
1 TTTTTCTTTTC
32377751 TTTTTCTTTT-
1 TTTTTCTTTTC
32377761 TTTT
1 TTTT
32377765 ATATGTGATT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.41
11 20 0.59
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:32377746 original size:21 final size:20
Alignment explanation
Indices: 32377719--32377764 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 20
32377709 AATATAAATA
32377719 TTTTTCTTTTCTTTTTCTTT
1 TTTTTCTTTTCTTTTTCTTT
32377739 TCTTTTCTTTTCTTTTTCTTT
1 T-TTTTCTTTTCTTTTTCTTT
32377760 TTTTT
1 TTTTT
32377765 ATATGTGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTCTTTTCTTTTTCTTT
Found at i:32397350 original size:23 final size:23
Alignment explanation
Indices: 32397308--32397364 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
32397298 AATCGTATTA
* *
32397308 TATGCACCCGTGACATTTG-TGCT
1 TATGCACCCCTGACAATTGTTG-T
*
32397331 TATGCACCCCTGATAATTGTTGT
1 TATGCACCCCTGACAATTGTTGT
*
32397354 TATGCATCCCT
1 TATGCACCCCT
32397365 CATATACGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 27 0.93
24 2 0.07
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (23 bp):
TATGCACCCCTGACAATTGTTGT
Found at i:32397479 original size:57 final size:57
Alignment explanation
Indices: 32397410--32397528 Score: 238
Period size: 57 Copynumber: 2.1 Consensus size: 57
32397400 ACATGTGCTT
32397410 CTAATAAATTACACTCTTGTTTCTATTATATCTAAATTATTTCATATATCTAGTTTA
1 CTAATAAATTACACTCTTGTTTCTATTATATCTAAATTATTTCATATATCTAGTTTA
32397467 CTAATAAATTACACTCTTGTTTCTATTATATCTAAATTATTTCATATATCTAGTTTA
1 CTAATAAATTACACTCTTGTTTCTATTATATCTAAATTATTTCATATATCTAGTTTA
32397524 CTAAT
1 CTAAT
32397529 GTAATTGAAG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 62 1.00
ACGTcount: A:0.34, C:0.14, G:0.03, T:0.49
Consensus pattern (57 bp):
CTAATAAATTACACTCTTGTTTCTATTATATCTAAATTATTTCATATATCTAGTTTA
Found at i:32397505 original size:28 final size:28
Alignment explanation
Indices: 32397414--32397505 Score: 89
Period size: 28 Copynumber: 3.2 Consensus size: 28
32397404 GTGCTTCTAA
32397414 TAAATTACACTCTTGTTTCTATTATATC
1 TAAATTACACTCTTGTTTCTATTATATC
** * * * *
32397442 TAAATTA-TTTCATATATCTAGTT-TACTAA
1 TAAATTACACTCTTGTTTCTA-TTATA-T-C
32397471 TAAATTACACTCTTGTTTCTATTATATC
1 TAAATTACACTCTTGTTTCTATTATATC
32397499 TAAATTA
1 TAAATTA
32397506 TTTCATATAT
Statistics
Matches: 47, Mismatches: 12, Indels: 10
0.68 0.17 0.14
Matches are distributed among these distances:
27 10 0.21
28 17 0.36
29 10 0.21
30 10 0.21
ACGTcount: A:0.34, C:0.14, G:0.03, T:0.49
Consensus pattern (28 bp):
TAAATTACACTCTTGTTTCTATTATATC
Found at i:32405828 original size:24 final size:25
Alignment explanation
Indices: 32405801--32405864 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
32405791 CTCTATCTAA
32405801 GCTCGTAAGAGCTAA-CCTATCTGG
1 GCTCGTAAGAGCTAATCCTATCTGG
* *
32405825 GCTCGTAAGAGCTAATTCTGTCTGG
1 GCTCGTAAGAGCTAATCCTATCTGG
* *
32405850 GCTCATATGAGCTAA
1 GCTCGTAAGAGCTAA
32405865 ATTCTAGAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
24 15 0.43
25 20 0.57
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (25 bp):
GCTCGTAAGAGCTAATCCTATCTGG
Found at i:32415244 original size:45 final size:45
Alignment explanation
Indices: 32415180--32415266 Score: 174
Period size: 45 Copynumber: 1.9 Consensus size: 45
32415170 GTTGAATCTA
32415180 GTAAAAACAGATAAAATAAACCAGAGTTGTCTAAATGTTTTTCTG
1 GTAAAAACAGATAAAATAAACCAGAGTTGTCTAAATGTTTTTCTG
32415225 GTAAAAACAGATAAAATAAACCAGAGTTGTCTAAATGTTTTT
1 GTAAAAACAGATAAAATAAACCAGAGTTGTCTAAATGTTTTT
32415267 GTACAGGAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (45 bp):
GTAAAAACAGATAAAATAAACCAGAGTTGTCTAAATGTTTTTCTG
Found at i:32420605 original size:21 final size:21
Alignment explanation
Indices: 32420579--32420618 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32420569 AGATTTTGCT
* *
32420579 TACTTGTTTCGGTGGAAGTCC
1 TACTTGTATCGGTAGAAGTCC
32420600 TACTTGTATCGGTAGAAGT
1 TACTTGTATCGGTAGAAGT
32420619 ATAGGGTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.15, G:0.28, T:0.38
Consensus pattern (21 bp):
TACTTGTATCGGTAGAAGTCC
Found at i:32428417 original size:19 final size:19
Alignment explanation
Indices: 32428379--32428417 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32428369 GAAGTTTAAA
*
32428379 TATTTTAAAGACTTTTATT
1 TATTTTAAAGACTTTAATT
32428398 TATTTT-AAGACTTGTAATT
1 TATTTTAAAGACTT-TAATT
32428417 T
1 T
32428418 TGGGATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.56
Consensus pattern (19 bp):
TATTTTAAAGACTTTAATT
Found at i:32431346 original size:13 final size:13
Alignment explanation
Indices: 32431328--32431360 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
32431318 AGTCAAGGTT
32431328 AATGGGTCGAGCC
1 AATGGGTCGAGCC
*
32431341 AATGGGTCGAGTC
1 AATGGGTCGAGCC
32431354 AATGGGT
1 AATGGGT
32431361 GAAGGTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.15, G:0.39, T:0.21
Consensus pattern (13 bp):
AATGGGTCGAGCC
Found at i:32431381 original size:14 final size:14
Alignment explanation
Indices: 32431364--32431492 Score: 52
Period size: 14 Copynumber: 9.4 Consensus size: 14
32431354 AATGGGTGAA
32431364 GGTCAATGGTTCAG
1 GGTCAATGGTTCAG
**
32431378 GGTCACGGGTT--G
1 GGTCAATGGTTCAG
* *
32431390 AGTCAATGGGTCAG
1 GGTCAATGGTTCAG
* *
32431404 GGTTAATGGGTTGA-
1 GGTCAAT-GGTTCAG
* * *
32431418 GAT-AATAGCTCAG
1 GGTCAATGGTTCAG
* * *
32431431 GGTCAGTGGGTCAA
1 GGTCAATGGTTCAG
*
32431445 GGTTAATGGGTT-AG
1 GGTCAAT-GGTTCAG
* *
32431459 GGTCAACGGCTCAG
1 GGTCAATGGTTCAG
* *
32431473 GGTCAATGGGTCAA
1 GGTCAATGGTTCAG
32431487 GGTCAA
1 GGTCAA
32431493 CAGGTCAGGG
Statistics
Matches: 79, Mismatches: 29, Indels: 14
0.65 0.24 0.11
Matches are distributed among these distances:
12 11 0.14
13 8 0.10
14 53 0.67
15 7 0.09
ACGTcount: A:0.24, C:0.13, G:0.38, T:0.25
Consensus pattern (14 bp):
GGTCAATGGTTCAG
Found at i:32431440 original size:27 final size:26
Alignment explanation
Indices: 32431365--32431441 Score: 66
Period size: 27 Copynumber: 2.9 Consensus size: 26
32431355 ATGGGTGAAG
* * *
32431365 GTCAATGGTTCAGGGTCACGGGTTGA
1 GTCAATAGCTCAGGGTCATGGGTTGA
* * *
32431391 GTCAATGGGTCAGGGTTAATGGGTTGA
1 GTCAATAGCTCAGGG-TCATGGGTTGA
32431418 GAT-AATAGCTCAGGGTCAGTGGGT
1 G-TCAATAGCTCAGGGTCA-TGGGT
32431442 CAAGGTTAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
26 16 0.38
27 25 0.60
28 1 0.02
ACGTcount: A:0.22, C:0.12, G:0.39, T:0.27
Consensus pattern (26 bp):
GTCAATAGCTCAGGGTCATGGGTTGA
Found at i:32431480 original size:28 final size:28
Alignment explanation
Indices: 32431439--32431504 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
32431429 AGGGTCAGTG
* * * *
32431439 GGTCAAGGTTAATGGGTTAGGGTCAAC-
1 GGTCAGGGTCAATGGGTCAAGGTCAACA
32431466 GGCTCAGGGTCAATGGGTCAAGGTCAACA
1 GG-TCAGGGTCAATGGGTCAAGGTCAACA
32431495 GGTCAGGGTC
1 GGTCAGGGTC
32431505 GGGTTACGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 2 0.06
28 29 0.88
29 2 0.06
ACGTcount: A:0.24, C:0.17, G:0.38, T:0.21
Consensus pattern (28 bp):
GGTCAGGGTCAATGGGTCAAGGTCAACA
Found at i:32431498 original size:14 final size:13
Alignment explanation
Indices: 32431457--32431504 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
32431447 TTAATGGGTT
32431457 AGGGTCAACGGCTC
1 AGGGTCAACGG-TC
*
32431471 AGGGTCAATGGGTC
1 AGGGTCAA-CGGTC
*
32431485 AAGGTCAACAGGTC
1 AGGGTCAAC-GGTC
32431499 AGGGTC
1 AGGGTC
32431505 GGGTTACGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 26 0.93
15 2 0.07
ACGTcount: A:0.25, C:0.21, G:0.38, T:0.17
Consensus pattern (13 bp):
AGGGTCAACGGTC
Found at i:32431503 original size:42 final size:42
Alignment explanation
Indices: 32431425--32431504 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
32431415 TGAGATAATA
* * ** *
32431425 GCTCAGGGTCAGTGGGTCAAGGTTAATGGGTTAGGGTCAACG
1 GCTCAGGGTCAATGGGTCAAGGTCAACAGGTCAGGGTCAACG
32431467 GCTCAGGGTCAATGGGTCAAGGTCAACAGGTCAGGGTC
1 GCTCAGGGTCAATGGGTCAAGGTCAACAGGTCAGGGTC
32431505 GGGTTACGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.23, C:0.17, G:0.39, T:0.21
Consensus pattern (42 bp):
GCTCAGGGTCAATGGGTCAAGGTCAACAGGTCAGGGTCAACG
Found at i:32436644 original size:24 final size:24
Alignment explanation
Indices: 32436616--32436721 Score: 185
Period size: 24 Copynumber: 4.4 Consensus size: 24
32436606 GGCCCATACA
*
32436616 AGCCCAGAACGGTTAGCTCTTACG
1 AGCCCAGAATGGTTAGCTCTTACG
32436640 AGCCCAGAATGGTTAGCTCTTACG
1 AGCCCAGAATGGTTAGCTCTTACG
*
32436664 AGCCCATAATGGTTAGCTCTTACG
1 AGCCCAGAATGGTTAGCTCTTACG
*
32436688 AGCCCAGAATGGTTAGCTCCTACG
1 AGCCCAGAATGGTTAGCTCTTACG
32436712 AGCCCAGAAT
1 AGCCCAGAAT
32436722 TAGTATAACG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 78 1.00
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (24 bp):
AGCCCAGAATGGTTAGCTCTTACG
Found at i:32440340 original size:3 final size:3
Alignment explanation
Indices: 32440332--32440371 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
32440322 AAAGGCCCAA
* *
32440332 ATT ATT ATT ATC ATT ACT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
32440372 GGGTTTCATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:32441251 original size:153 final size:150
Alignment explanation
Indices: 32440907--32441392 Score: 685
Period size: 153 Copynumber: 3.2 Consensus size: 150
32440897 TTTTTTAGAT
* *
32440907 AAGTTTAAAATTTTAAACAAAATTTTAAATTTTTTTAACTATTTCGAAATAAAAGTTTAGATTTT
1 AAGTTTAAATTTTTAAACAAAGTTTT-AATTTTTTTAACTATTTCGAAATAAAAGTTTAGATTTT
* * *
32440972 TAAG-AAAGTACTGATTTTCATTAAAAAAG-GAGAAAGTTTATATTTTT-AAAAAT-AAAATATA
65 TAAGTAAAGTAGTGATTTTCA-TAAAAAAGAAAGAAAGTTTATATTTTTAAAAAATAAAAATCTA
32441033 TTTTTTAGTTATTTTAAAGAAA
129 TTTTTTAGTTATTTTAAAGAAA
* * * * * * *
32441055 AAGGTTTAAATTTTTAAATAAATTTTTTATTTTTTTAAATATTTTGAAATAAAAGTTTGGGTTTT
1 AA-GTTTAAATTTTTAAACAAAGTTTTAATTTTTTTAACTATTTCGAAATAAAAGTTTAGATTTT
32441120 TAAGTAAAGTAGTGATTTTCATAAAAAAAAGAAAGAAAGTTTATATTTTTAAAAAATAAAAAATC
65 TAAGTAAAGTAGTGATTTTCAT--AAAAAAGAAAGAAAGTTTATATTTTTAAAAAAT-AAAAATC
32441185 TATTTTTTAGTTATTTTAAAGAAA
127 TATTTTTTAGTTATTTTAAAGAAA
*
32441209 AAGTTTAAATTTTTAAATAAAGTTTTAATTTTTTTAACTATTTCGAAATAAAAGTTTAGATTTTT
1 AAGTTTAAATTTTTAAACAAAGTTTTAATTTTTTTAACTATTTCGAAATAAAAGTTTAGATTTTT
* * *
32441274 AAGTAAAATAGTGATTTTCATTAAAAA-AAAGAAAGTTTAGATTTTTAAAAAATAAAAATCTATT
66 AAGTAAAGTAGTGATTTTCATAAAAAAGAAAGAAAGTTTATATTTTTAAAAAATAAAAATCTA--
* *
32441338 TTTTTTAGTGATTTTAAAGTGAA
129 TTTTTTAGTTATTTTAAAG-AAA
*
32441361 AAGTTTAAATTTTTAAACAAAGTTTTGATTTT
1 AAGTTTAAATTTTTAAACAAAGTTTTAATTTT
32441393 GAAGTAAAAT
Statistics
Matches: 303, Mismatches: 24, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
148 40 0.13
149 45 0.15
150 32 0.11
151 40 0.13
152 38 0.13
153 77 0.25
154 31 0.10
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (150 bp):
AAGTTTAAATTTTTAAACAAAGTTTTAATTTTTTTAACTATTTCGAAATAAAAGTTTAGATTTTT
AAGTAAAGTAGTGATTTTCATAAAAAAGAAAGAAAGTTTATATTTTTAAAAAATAAAAATCTATT
TTTTAGTTATTTTAAAGAAA
Found at i:32442859 original size:238 final size:236
Alignment explanation
Indices: 32442438--32442912 Score: 700
Period size: 238 Copynumber: 2.0 Consensus size: 236
32442428 AAAATCATAA
*
32442438 TAATGATAAAAGATCAAATAAGTTATAGATGAATTTTAATATTTCTCTTAATTCATTAGTAACTT
1 TAATGATAAAAGATCAAATAAGTTATAGATGAATTTTAATATTTCTCTTAATTCAGTAGTAACTT
* *
32442503 TTAGGTTTTTTTAGGATTCTAAAATAAAATTAATTTTAAGAATTGAAGGTATTTTACTAGAACTA
66 TTAGG-TTTTTTAGGATTCTAAAATAAAATTAATTTTAAAAATTGAAAGTATTTTACTAGAACTA
* *
32442568 TTTAGGTATCTTTTAGGATTCTCATTAGAAGTAAAAATCTCTAATTTAAGTTTTAAATTAGATAA
130 TTTAGGTATCCTTTAGGATTCTCATTAGAAGTAAAAATCTCTAATTGAAGTTTTAAATTAGATAA
* * * *
32442633 GTTTGGCGAACACGTTTTTGTCAAGTTACAAGTGAATCGGAG
195 ATTTGGCGAACACGTCTTAGTCAAGTTACAAGTAAATCGGAG
** * *
32442675 TAATGATAAAAGATTGAATACGTTGTAGATGAATTTTAATATTTCTCTTAATTCAGTAGTAATTT
1 TAATGATAAAAGATCAAATAAGTTATAGATGAATTTTAATATTTCTCTTAATTCAGTAGTAA---
* * * *
32442740 TTTTTAGG-TTTTTAGTATTCTAAAATAGAATTAATTTTAAAAATTGAAAGTATTTTACTAGAAT
63 CTTTTAGGTTTTTTAGGATTCTAAAATAAAATTAATTTTAAAAATTGAAAGTATTTTACTAGAAC
* * * *
32442804 TATTTAGGTATCCTTTAGGGTTCTTATTAGGAGTAAAAATCTTTAATTGAAGTTTTAAATTAGAT
128 TATTTAGGTATCCTTTAGGATTCTCATTAGAAGTAAAAATCTCTAATTGAAGTTTTAAATTAGAT
* *
32442869 AAATTTGGTGAACACGTCTTAGTCAAGTTACAAGTAAATTGGAG
193 AAATTTGGCGAACACGTCTTAGTCAAGTTACAAGTAAATCGGAG
32442913 GCATTTTTAA
Statistics
Matches: 212, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
237 57 0.27
238 148 0.70
240 7 0.03
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.41
Consensus pattern (236 bp):
TAATGATAAAAGATCAAATAAGTTATAGATGAATTTTAATATTTCTCTTAATTCAGTAGTAACTT
TTAGGTTTTTTAGGATTCTAAAATAAAATTAATTTTAAAAATTGAAAGTATTTTACTAGAACTAT
TTAGGTATCCTTTAGGATTCTCATTAGAAGTAAAAATCTCTAATTGAAGTTTTAAATTAGATAAA
TTTGGCGAACACGTCTTAGTCAAGTTACAAGTAAATCGGAG
Found at i:32452530 original size:30 final size:30
Alignment explanation
Indices: 32452462--32452532 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
32452452 AATTAAAGCT
*
32452462 CAATTTAGTCCCTAAATTCCACTAAAATAA
1 CAATTTAGTCCCTAAATTCCACAAAAATAA
* ** *
32452492 CAAATTAGTCCCTAAATTTGACAAAAAT-T
1 CAATTTAGTCCCTAAATTCCACAAAAATAA
32452521 CTAATTTAGTCC
1 C-AATTTAGTCC
32452533 TTCATTCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 1 0.03
30 33 0.97
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (30 bp):
CAATTTAGTCCCTAAATTCCACAAAAATAA
Found at i:32453855 original size:49 final size:51
Alignment explanation
Indices: 32453740--32453918 Score: 229
Period size: 51 Copynumber: 3.5 Consensus size: 51
32453730 TAGACGAAAG
* *
32453740 GGTCTGATGACTAAGTGTCATCGTAAGTAAATGAATCTTGTATGGATTAAA
1 GGTCTGATGACTAAGTGTCATCGTGAGTAAATGAATCCTGTATGGATTAAA
** * * * *
32453791 GGTCCAATGGCTAAGTTTCATCGTGAGTGAATGAATCCT-T-TGGATTAAT
1 GGTCTGATGACTAAGTGTCATCGTGAGTAAATGAATCCTGTATGGATTAAA
* *
32453840 GGTCTGATGACTAAGTGTTATCATGAGTAAATGAATCCTGTATGGATTAAA
1 GGTCTGATGACTAAGTGTCATCGTGAGTAAATGAATCCTGTATGGATTAAA
*
32453891 GGT-TCGATGACTAAGTGCCATCGTGAGT
1 GGTCT-GATGACTAAGTGTCATCGTGAGT
32453919 TTATAGATTC
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
49 40 0.38
50 3 0.03
51 63 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (51 bp):
GGTCTGATGACTAAGTGTCATCGTGAGTAAATGAATCCTGTATGGATTAAA
Found at i:32460906 original size:26 final size:26
Alignment explanation
Indices: 32460870--32460942 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
32460860 CGTAATTTTA
*
32460870 GATATGCTCATGCAGTGACAACTCTG
1 GATATGTTCATGCAGTGACAACTCTG
* * *
32460896 GATATGTTCATGCAGCGATAATTCTG
1 GATATGTTCATGCAGTGACAACTCTG
* * * *
32460922 GACAAGTTCCTGCAATGACAA
1 GATATGTTCATGCAGTGACAA
32460943 TTCTCGGCGC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (26 bp):
GATATGTTCATGCAGTGACAACTCTG
Found at i:32462871 original size:13 final size:14
Alignment explanation
Indices: 32462841--32462931 Score: 91
Period size: 13 Copynumber: 6.8 Consensus size: 14
32462831 AAAGTCAACA
*
32462841 GTCAAGGTCAA-CG
1 GTCAAGGTCAATGG
*
32462854 ATCAAGGTCAAT-G
1 GTCAAGGTCAATGG
*
32462867 GTCAAAGTCAATGG
1 GTCAAGGTCAATGG
*
32462881 GTC-AGGTCAAGGG
1 GTCAAGGTCAATGG
**
32462894 GTCAAATTCAATGG
1 GTCAAGGTCAATGG
32462908 GTC-AGGTCAATGG
1 GTCAAGGTCAATGG
*
32462921 GTCAAAGTCAA
1 GTCAAGGTCAA
32462932 CGAGTCTGAT
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
13 43 0.68
14 20 0.32
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (14 bp):
GTCAAGGTCAATGG
Found at i:32462904 original size:27 final size:26
Alignment explanation
Indices: 32462858--32462931 Score: 112
Period size: 27 Copynumber: 2.8 Consensus size: 26
32462848 TCAACGATCA
*
32462858 AGGTCAATGGTCAAAGTCAATGGGTC
1 AGGTCAAGGGTCAAAGTCAATGGGTC
*
32462884 AGGTCAAGGGGTCAAATTCAATGGGTC
1 AGGTCAA-GGGTCAAAGTCAATGGGTC
32462911 AGGTCAATGGGTCAAAGTCAA
1 AGGTCAA-GGGTCAAAGTCAA
32462932 CGAGTCTGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 7 0.16
27 36 0.84
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.22
Consensus pattern (26 bp):
AGGTCAAGGGTCAAAGTCAATGGGTC
Found at i:32463438 original size:20 final size:18
Alignment explanation
Indices: 32463400--32463444 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 18
32463390 TCATGGGACC
*
32463400 AAAAATAACCTTACAACG
1 AAAAATAACATTACAACG
32463418 AAAAATAACATTCACCAACG
1 AAAAATAACATT-A-CAACG
32463438 ATAAAAT
1 A-AAAAT
32463445 CAATAACGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 11 0.48
19 1 0.04
20 6 0.26
21 5 0.22
ACGTcount: A:0.58, C:0.20, G:0.04, T:0.18
Consensus pattern (18 bp):
AAAAATAACATTACAACG
Found at i:32465728 original size:12 final size:12
Alignment explanation
Indices: 32465711--32465735 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32465701 TTTCAGTATG
32465711 TCTATCATAGTT
1 TCTATCATAGTT
32465723 TCTATCATAGTT
1 TCTATCATAGTT
32465735 T
1 T
32465736 GCCTGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.52
Consensus pattern (12 bp):
TCTATCATAGTT
Found at i:32478268 original size:12 final size:12
Alignment explanation
Indices: 32478251--32478277 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32478241 TTGCAGGCCA
32478251 TGGTAGTGGCAG
1 TGGTAGTGGCAG
32478263 TGGTAGTGGCAG
1 TGGTAGTGGCAG
32478275 TGG
1 TGG
32478278 CAGGTGGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.07, G:0.52, T:0.26
Consensus pattern (12 bp):
TGGTAGTGGCAG
Found at i:32479147 original size:48 final size:48
Alignment explanation
Indices: 32479079--32479173 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
32479069 ATATTGAGCT
* * *
32479079 TCGCTTCTTTGTTTTAATCCACTTCTCTGTATCTCATTAAGAAGATGA
1 TCGCTTCATTATTTTAATCCACTTCTCTGTATCTCATCAAGAAGATGA
* *
32479127 TCGCTTCATTATTTTGATCCACTTCTCTGTATCTTATCAAGAAGATG
1 TCGCTTCATTATTTTAATCCACTTCTCTGTATCTCATCAAGAAGATG
32479174 GGGTTTGAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (48 bp):
TCGCTTCATTATTTTAATCCACTTCTCTGTATCTCATCAAGAAGATGA
Found at i:32479190 original size:123 final size:122
Alignment explanation
Indices: 32478885--32479191 Score: 438
Period size: 122 Copynumber: 2.5 Consensus size: 122
32478875 TGGTGTTATA
* *
32478885 GCTTCATCTTTTTG-TCCACTTCTCTGTATCTTATCAGGAAGATGGGGTTTGAAGTTTCACTCTT
1 GCTTCAT-TTTTTGATCCACTTCTCTGTATCTTATCAAGAAGATGGGGTTTGAAGTTTCACTCAT
** * * *
32478949 ATTGAGCTTCACTTCATTTTTTTGGTCCACTTCTTTATATCTCATCAGGAAGATTACC
65 ATTGAGCTTCACTTCATTTTTTTAATCCACTTCTCTATATCTCATCAAGAAGATGACC
* * * *
32479007 GCTTCGTTGTTTGATCCATTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTTTCACTCATA
1 GCTTCATTTTTTGATCCACTTCTCTGTATCTTATCAAGAAGATGGGGTTTGAAGTTTCACTCATA
* * * *
32479072 TTGAGCTTCGCTTC-TTTGTTTTAATCCACTTCTCTGTATCTCATTAAGAAGATGATC
66 TTGAGCTTCACTTCATTT-TTTTAATCCACTTCTCTATATCTCATCAAGAAGATGACC
32479129 GCTTCATTATTTTGATCCACTTCTCTGTATCTTATCAAGAAGATGGGGTTTGAAGTTTCACTC
1 GCTTCATT-TTTTGATCCACTTCTCTGTATCTTATCAAGAAGATGGGGTTTGAAGTTTCACTC
32479192 TACTCCATGT
Statistics
Matches: 163, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
121 8 0.05
122 104 0.64
123 51 0.31
ACGTcount: A:0.21, C:0.20, G:0.17, T:0.42
Consensus pattern (122 bp):
GCTTCATTTTTTGATCCACTTCTCTGTATCTTATCAAGAAGATGGGGTTTGAAGTTTCACTCATA
TTGAGCTTCACTTCATTTTTTTAATCCACTTCTCTATATCTCATCAAGAAGATGACC
Found at i:32479349 original size:30 final size:30
Alignment explanation
Indices: 32479315--32479373 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
32479305 TTATTTTGGT
*
32479315 CCACTTCTCTGTATCTCATCAGGAAGATGA
1 CCACTTCTCTGTATCTCATCAAGAAGATGA
* *
32479345 CCACTTTTTTGTATCTCATCAAGAAGATG
1 CCACTTCTCTGTATCTCATCAAGAAGATG
32479374 GGGTTTGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (30 bp):
CCACTTCTCTGTATCTCATCAAGAAGATGA
Found at i:32479435 original size:105 final size:105
Alignment explanation
Indices: 32479251--32479448 Score: 297
Period size: 105 Copynumber: 1.9 Consensus size: 105
32479241 CTTTTCTCTA
* * * *
32479251 TATCTCATTAGGAAGATGGGATTTGAAGTTTCACTCACATTGAGCTTCACTTCATTATTTTGGTC
1 TATCTCATCAAGAAGATGGGATTTGAAGCTTCACTCACATTGAGCTTCACTTCATTATTTTGCTC
*
32479316 CACTTCTCTGTATCTCATCAGGAAGATGACCACTTTTTTG
66 CACTTCTCTATATCTCATCAGGAAGATGACCACTTTTTTG
* ** *
32479356 TATCTCATCAAGAAGATGGGGTTTGAAGCTTCACTCACATTGAGCTTCGTTTCATTGTTTTGCTC
1 TATCTCATCAAGAAGATGGGATTTGAAGCTTCACTCACATTGAGCTTCACTTCATTATTTTGCTC
* *
32479421 CAGTTCTCTATATCTCATTAGGAAGATG
66 CACTTCTCTATATCTCATCAGGAAGATG
32479449 GTGTTAGATT
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
105 82 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (105 bp):
TATCTCATCAAGAAGATGGGATTTGAAGCTTCACTCACATTGAGCTTCACTTCATTATTTTGCTC
CACTTCTCTATATCTCATCAGGAAGATGACCACTTTTTTG
Found at i:32490746 original size:25 final size:26
Alignment explanation
Indices: 32490708--32490757 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32490698 AATGTTCGTA
32490708 TTTAAATACGAAAAATAA-TTAAAAAT
1 TTTAAATACG-AAAATAATTTAAAAAT
32490734 TTTAAATAC-AAAATAATTTAAAAA
1 TTTAAATACGAAAATAATTTAAAAA
32490758 AATGAACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 7 0.30
25 7 0.30
26 9 0.39
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (26 bp):
TTTAAATACGAAAATAATTTAAAAAT
Found at i:32496845 original size:38 final size:39
Alignment explanation
Indices: 32496758--32496858 Score: 132
Period size: 39 Copynumber: 2.6 Consensus size: 39
32496748 AATATAATAG
* * *
32496758 TTACAATTACCATAATTATAACAATGTTTGACCGAAAAA
1 TTACAATTACAATAATTATAACAATATTCGACCGAAAAA
* * *
32496797 TTACAATTACAATAATTATAATAATATTCGATCG-TAAA
1 TTACAATTACAATAATTATAACAATATTCGACCGAAAAA
*
32496835 TTATAATTACAATAATTATAACAA
1 TTACAATTACAATAATTATAACAA
32496859 AGATTTCGTT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
38 25 0.46
39 29 0.54
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.35
Consensus pattern (39 bp):
TTACAATTACAATAATTATAACAATATTCGACCGAAAAA
Found at i:32498717 original size:29 final size:29
Alignment explanation
Indices: 32498685--32498741 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
32498675 TTTCACTCCT
32498685 TGTGTGATATTATTCTGTG-TTGTGTTATC
1 TGTGTGATATTATTCTG-GATTGTGTTATC
* *
32498714 TGTGTGATTTTATTTTGGATTGTGTTAT
1 TGTGTGATATTATTCTGGATTGTGTTAT
32498742 TGCATGTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.14, C:0.04, G:0.25, T:0.58
Consensus pattern (29 bp):
TGTGTGATATTATTCTGGATTGTGTTATC
Found at i:32502223 original size:14 final size:14
Alignment explanation
Indices: 32502191--32502235 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
32502181 GTTTCACACC
*
32502191 CTGTGTGATATTAAT
1 CTGTGTGATGTT-AT
*
32502206 CTGTGTTATGTTAT
1 CTGTGTGATGTTAT
*
32502220 CTGTGTGATTTTAT
1 CTGTGTGATGTTAT
32502234 CT
1 CT
32502236 TCGGTTGTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
14 16 0.62
15 10 0.38
ACGTcount: A:0.18, C:0.09, G:0.20, T:0.53
Consensus pattern (14 bp):
CTGTGTGATGTTAT
Found at i:32505943 original size:3 final size:3
Alignment explanation
Indices: 32505935--32505969 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
32505925 ACAATCGTAA
32505935 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
32505970 ACCACCACCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (3 bp):
TCC
Found at i:32507886 original size:58 final size:58
Alignment explanation
Indices: 32507817--32507938 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 58
32507807 CGAAAAGGAG
32507817 TTGTTTATAAGTGTTGTTT--AGAAATAAAATTATATTT-GAGTTTAAAAATATTTGGATT
1 TTGTTTATAAGTGTT-TTTGAAG-AATAAAATTATATTTGGA-TTTAAAAATATTTGGATT
*
32507875 TTGTTTATAAGTGTTTTTGAAGAATGAAATTATATTTGGATTTAAAAATATTTGGATT
1 TTGTTTATAAGTGTTTTTGAAGAATAAAATTATATTTGGATTTAAAAATATTTGGATT
*
32507933 TAGTTT
1 TTGTTT
32507939 GTTGATGGGT
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
57 3 0.05
58 52 0.88
59 4 0.07
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.49
Consensus pattern (58 bp):
TTGTTTATAAGTGTTTTTGAAGAATAAAATTATATTTGGATTTAAAAATATTTGGATT
Found at i:32515668 original size:25 final size:23
Alignment explanation
Indices: 32515629--32515674 Score: 58
Period size: 22 Copynumber: 1.9 Consensus size: 23
32515619 TGTAAATAAA
32515629 AAAATATCTCTAGAG-ATTTTGT
1 AAAATATCTCTAGAGAATTTTGT
32515651 AAAATAATCTCTTCAGAGAATTTT
1 AAAAT-ATCTC-T-AGAGAATTTT
32515675 CTCTCTACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 5 0.25
23 5 0.25
24 1 0.05
25 4 0.20
26 5 0.25
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (23 bp):
AAAATATCTCTAGAGAATTTTGT
Found at i:32530538 original size:275 final size:275
Alignment explanation
Indices: 32530047--32530578 Score: 861
Period size: 275 Copynumber: 1.9 Consensus size: 275
32530037 ACATAGATAA
*
32530047 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
*
32530112 TAAACAGTTATATTAATTAATTTCAATAAAATACAAAAGAGATGAAAATTAATAATCTTTTGGAA
66 TAAACAGTTATATTAATTAATTTCAATAAAATACAAAAGACATGAAAATTAATAATCTTTTGGAA
* * * *
32530177 AGAATATAATTAATATATGAATTTGATTCATACAAAATATTAAGCGTATATATTTTACTAGATTT
131 AGAATATAATTAATACATGAATTTGACTCATACAAAATATTAAGAGTATATATATTACTAGATTT
* * *
32530242 ATTAATATAAATAGTTATATTAATTAATTTTGGTCAAATTATAAAAGACATGAAAATTAATAGTC
196 ATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATAGTC
32530307 TTTTGTAAAGAATAG
261 TTTTGTAAAGAATAG
32530322 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* * ** * *
32530387 TAAATATTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCAAT-AAAATACAAAAGACATGAAAATTAATAATCTTTTGGA
* * * *
32530452 AAGAATATAATTAATACATGAATTTGACTCATA-GAAATATTAATATTATATATATTA-TTGAAT
130 AAGAATATAATTAATACATGAATTTGACTCATACAAAATATTAAGAGTATATATATTACTAG-AT
32530515 TTATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATA
194 TTATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATA
32530579 TACTGTTGGA
Statistics
Matches: 236, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
274 2 0.01
275 169 0.72
276 65 0.28
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.40
Consensus pattern (275 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
TAAACAGTTATATTAATTAATTTCAATAAAATACAAAAGACATGAAAATTAATAATCTTTTGGAA
AGAATATAATTAATACATGAATTTGACTCATACAAAATATTAAGAGTATATATATTACTAGATTT
ATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATAGTC
TTTTGTAAAGAATAG
Found at i:32530579 original size:137 final size:138
Alignment explanation
Indices: 32530047--32530588 Score: 831
Period size: 138 Copynumber: 3.9 Consensus size: 138
32530037 ACATAGATAA
32530047 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
** * * *
32530112 TAAACAGTTATATTAATTAATTTCAAT-AAAATACAAAAGAGATGAAAATTAATAATCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
32530176 AAGAATAT
131 AAGAATAT
**
32530184 AATTAATATATGAATTTGATTCATACAAAATATTAAGCGTATATATTTTACT-AGATTTATTAAT
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGA-ATTTATTAAT
* * * * *
32530248 ATAAATAGTTATATTAATTAATTTTGGTCAAATTATAAAAGACATGAAAATTAATAGTCTTTTGT
65 ATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGG
*
32530313 AAAGAATAG
130 AAAGAATAT
*
32530322 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
* *
32530387 TAAATATTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
32530452 AAGAATAT
131 AAGAATAT
* * * * *
32530460 AATTAATACATGAATTTGACTCATA-GAAATATTAATAT-TATATATATTATTGAATTTATTAAT
1 AATTAATATATGAATTTGATTCATACAAAATATTAAT-TGTATATATTTTACTGAATTTATTAAT
* *
32530523 ATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATACTGTTGG
65 ATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGG
32530588 A
130 A
32530589 GTATAATTCT
Statistics
Matches: 370, Mismatches: 31, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
136 1 0.00
137 178 0.48
138 190 0.51
139 1 0.00
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.40
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
AAGAATAT
Found at i:32530776 original size:72 final size:72
Alignment explanation
Indices: 32530689--32530831 Score: 259
Period size: 72 Copynumber: 2.0 Consensus size: 72
32530679 CTAACTTTCT
* * *
32530689 ATTTGCTTTCTCTATTAATAAAGGAATAATCCTAGTTTTCCTTTTTAATATGTGATATCTAAGAG
1 ATTTGCTTTCTCTATTAATAAAAGAATAATCCTAGTTGTCCTTTTTAATATGTGATATCAAAGAG
32530754 GATAAAC
66 GATAAAC
32530761 ATTTGCTTTCTCTATTAATAAAAGAATAATCCTAGTTGTCCTTTTTAATATGTGATATCAAAGAG
1 ATTTGCTTTCTCTATTAATAAAAGAATAATCCTAGTTGTCCTTTTTAATATGTGATATCAAAGAG
32530826 GATAAA
66 GATAAA
32530832 AGGATGATGA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.41
Consensus pattern (72 bp):
ATTTGCTTTCTCTATTAATAAAAGAATAATCCTAGTTGTCCTTTTTAATATGTGATATCAAAGAG
GATAAAC
Found at i:32537527 original size:27 final size:27
Alignment explanation
Indices: 32537440--32537529 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
32537430 AGCAATAATA
*
32537440 AATACTTTGTTTCTGGCTCAAAAGAGC
1 AATACTCTGTTTCTGGCTCAAAAGAGC
* ** **
32537467 AATATTCTGTTTCAAGCTTGAAAGAGC
1 AATACTCTGTTTCTGGCTCAAAAGAGC
32537494 AATACTCTGTTTCTGGCTCAAAAGAGC
1 AATACTCTGTTTCTGGCTCAAAAGAGC
*
32537521 GATACTCTG
1 AATACTCTG
32537530 CTTGTAACAC
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (27 bp):
AATACTCTGTTTCTGGCTCAAAAGAGC
Found at i:32538529 original size:26 final size:26
Alignment explanation
Indices: 32538491--32538557 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
32538481 TATATATACA
*
32538491 CATATAACAATTTCATGAAATCA-TT
1 CATATAACCATTTCATGAAATCATTT
** *
32538516 CATTATAACCATTTTTTGTAATCATTT
1 CA-TATAACCATTTCATGAAATCATTT
32538543 CATAT-ACCATTTCAT
1 CATATAACCATTTCAT
32538558 TTATCTATGT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 10 0.29
26 20 0.59
27 4 0.12
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.43
Consensus pattern (26 bp):
CATATAACCATTTCATGAAATCATTT
Found at i:32539056 original size:158 final size:158
Alignment explanation
Indices: 32538815--32539147 Score: 443
Period size: 158 Copynumber: 2.1 Consensus size: 158
32538805 GTAACCATAT
* * * *
32538815 ATGCTCACACGAGTTGTGAAATGGGCCTGCTCACACGAGCTATGGGTCAAGATGTGGGGCTACAC
1 ATGCTCACACGAGCTGTGAAATGGGCCTACCCACACGAGCTATGGGTCAAGATGTGAGGCTACAC
* * * * **
32538880 GATGCTGCTCACATGAGTTGTGGAGAATCCA-CAATAAATGTTGGACCTCAGTCATCAATAAGAC
66 GATGCTGCTCACACGAGTTATGGAGAAT-CAGCAACAAATGTAGGACCTCAACCATCAATAAGAC
* *
32538944 ATCTAAGACCAGCACCCATATAACCTGTA
130 ATCCAAGACCAACACCCATATAACCTGTA
* * * * *
32538973 ATGCTCACACGAGCTGTGAAATGGGTCTACCCACACGAGCTGTGGGTTAAGATGTTAGGCTACGC
1 ATGCTCACACGAGCTGTGAAATGGGCCTACCCACACGAGCTATGGGTCAAGATGTGAGGCTACAC
* * * *
32539038 GATGCTGCTCACACGAGTTATGGAGAATCAGTAACCAATGTAGGACCTCAACCATCAGTAGGACA
66 GATGCTGCTCACACGAGTTATGGAGAATCAGCAACAAATGTAGGACCTCAACCATCAATAAGACA
*
32539103 TCCAAGACCAACACTCATATAACCTGTA
131 TCCAAGACCAACACCCATATAACCTGTA
*
32539131 ATGCTGACACGAGCTGT
1 ATGCTCACACGAGCTGT
32539148 AACTGTAACA
Statistics
Matches: 151, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
157 2 0.01
158 149 0.99
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.22
Consensus pattern (158 bp):
ATGCTCACACGAGCTGTGAAATGGGCCTACCCACACGAGCTATGGGTCAAGATGTGAGGCTACAC
GATGCTGCTCACACGAGTTATGGAGAATCAGCAACAAATGTAGGACCTCAACCATCAATAAGACA
TCCAAGACCAACACCCATATAACCTGTA
Found at i:32542448 original size:23 final size:24
Alignment explanation
Indices: 32542422--32542474 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
32542412 TACGGAATAG
*
32542422 AATAGAACACCATCCAAGTAGAT-
1 AATAGAACACCATCCAAGCAGATA
* * *
32542445 AATAAAACATCATCGAAGCAGATA
1 AATAGAACACCATCCAAGCAGATA
32542469 AATAGA
1 AATAGA
32542475 GAGCACAGAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.53, C:0.17, G:0.13, T:0.17
Consensus pattern (24 bp):
AATAGAACACCATCCAAGCAGATA
Found at i:32544846 original size:43 final size:43
Alignment explanation
Indices: 32544666--32544959 Score: 374
Period size: 43 Copynumber: 6.8 Consensus size: 43
32544656 CTGAGTTAAC
* * * *
32544666 CTTATGCTCTATCCAAGTCATAAGTTCTTCCATTTACAAATAAT
1 CTTATGCTCTAACCGAGACATAAG-TCTTCCATTTACAAACAAT
* ** *
32544710 CTTATCCTCTAGTCGAGACATAAGTTCTTCCATTTACAAATAAT
1 CTTATGCTCTAACCGAGACATAAG-TCTTCCATTTACAAACAAT
*
32544754 CTTATGCTC-AAGCCGAGACATAAGTTCTTCCATTTACAAATAAT
1 CTTATGCTCTAA-CCGAGACATAAG-TCTTCCATTTACAAACAAT
* * *
32544798 CTTATGCTCTAGCCGAGACATAAGTCTTCCATTTATAAGCAAT
1 CTTATGCTCTAACCGAGACATAAGTCTTCCATTTACAAACAAT
* * * *
32544841 TTTATGCTCTAATCGAGACATAAGTCTTCCATTTATAAGCAAT
1 CTTATGCTCTAACCGAGACATAAGTCTTCCATTTACAAACAAT
* *
32544884 CTTATGCTCTAACCGAGACATAAGTCTTCCATTTATAAGCAAT
1 CTTATGCTCTAACCGAGACATAAGTCTTCCATTTACAAACAAT
*
32544927 CTTATGCTCTAACCGAGACATAAGTCTTGCATT
1 CTTATGCTCTAACCGAGACATAAGTCTTCCATT
32544960 AAGAACTCAC
Statistics
Matches: 230, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
43 130 0.57
44 99 0.43
45 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (43 bp):
CTTATGCTCTAACCGAGACATAAGTCTTCCATTTACAAACAAT
Found at i:32544901 original size:86 final size:87
Alignment explanation
Indices: 32544666--32544959 Score: 414
Period size: 86 Copynumber: 3.4 Consensus size: 87
32544656 CTGAGTTAAC
* * * * *
32544666 CTTATGCTCTATCCAAGTCATAAGTTCTTCCATTTACAAATAATCTTATCCTCTAGTCGAGACAT
1 CTTATGCTCTAACCGAGACATAAGTTCTTCCATTTACAAATAATCTTATGCTCTAGCCGAGACAT
* **
32544731 AAGTTCTTCCATTTACAAATAAT
66 AAG-TCTTCCATTTATAAGCAAT
32544754 CTTATGCTC-AAGCCGAGACATAAGTTCTTCCATTTACAAATAATCTTATGCTCTAGCCGAGACA
1 CTTATGCTCTAA-CCGAGACATAAGTTCTTCCATTTACAAATAATCTTATGCTCTAGCCGAGACA
32544818 TAAGTCTTCCATTTATAAGCAAT
65 TAAGTCTTCCATTTATAAGCAAT
* * * ** *
32544841 TTTATGCTCTAATCGAGACATAAG-TCTTCCATTTATAAGCAATCTTATGCTCTAACCGAGACAT
1 CTTATGCTCTAACCGAGACATAAGTTCTTCCATTTACAAATAATCTTATGCTCTAGCCGAGACAT
32544905 AAGTCTTCCATTTATAAGCAAT
66 AAGTCTTCCATTTATAAGCAAT
*
32544927 CTTATGCTCTAACCGAGACATAAG-TCTTGCATT
1 CTTATGCTCTAACCGAGACATAAGTTCTTCCATT
32544960 AAGAACTCAC
Statistics
Matches: 187, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
86 88 0.47
87 36 0.19
88 63 0.34
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (87 bp):
CTTATGCTCTAACCGAGACATAAGTTCTTCCATTTACAAATAATCTTATGCTCTAGCCGAGACAT
AAGTCTTCCATTTATAAGCAAT
Found at i:32549880 original size:15 final size:15
Alignment explanation
Indices: 32549860--32549889 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32549850 AAGTCATAAG
32549860 TTCTTCCATTTACAA
1 TTCTTCCATTTACAA
32549875 TTCTTCCATTTACAA
1 TTCTTCCATTTACAA
32549890 ATAATCTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.47
Consensus pattern (15 bp):
TTCTTCCATTTACAA
Found at i:32549939 original size:43 final size:43
Alignment explanation
Indices: 32549876--32549970 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 43
32549866 CATTTACAAT
* **
32549876 TCTTCCATTTACAAATAATCTTATGCTCTAGTCGAGACATAAG
1 TCTTCCATTTACAAACAATCTTATGCTCTAACCGAGACATAAG
* * *
32549919 TTTTCCATTTATAAGCAATCTTATGCTCTAACCGAGACATAAG
1 TCTTCCATTTACAAACAATCTTATGCTCTAACCGAGACATAAG
32549962 TCTTCCATT
1 TCTTCCATT
32549971 AAGAATTCAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.37
Consensus pattern (43 bp):
TCTTCCATTTACAAACAATCTTATGCTCTAACCGAGACATAAG
Found at i:32549985 original size:23 final size:23
Alignment explanation
Indices: 32549959--32550016 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
32549949 ACCGAGACAT
*
32549959 AAGTCTTCCATTAAGAATTCATC
1 AAGTCTTCCATTAAGAATTCACC
32549982 AAGTCTTCCATTAAGAATTCACC
1 AAGTCTTCCATTAAGAATTCACC
32550005 AAGTCTTCCATT
1 AAGTCTTCCATT
32550017 TATCAAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (23 bp):
AAGTCTTCCATTAAGAATTCACC
Found at i:32552816 original size:26 final size:25
Alignment explanation
Indices: 32552765--32552831 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 25
32552755 TATATATATA
32552765 CATTCATATAACCATTTCATGAAAT
1 CATTCATATAACCATTTCATGAAAT
* *
32552790 CATTCATTATAACCATATT-TTGTAAT
1 CATTCA-TATAACCAT-TTCATGAAAT
32552816 CATTTCATAT-ACCATT
1 CA-TTCATATAACCATT
32552832 ACATTTATCC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
24 1 0.03
25 11 0.30
26 19 0.51
27 6 0.16
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.42
Consensus pattern (25 bp):
CATTCATATAACCATTTCATGAAAT
Found at i:32553134 original size:25 final size:26
Alignment explanation
Indices: 32553094--32553155 Score: 99
Period size: 25 Copynumber: 2.4 Consensus size: 26
32553084 TAACCATATA
*
32553094 TGCTCACACGAGCTATGAAATGGTCC
1 TGCTCACACGACCTATGAAATGGTCC
32553120 T-CTCACACGACCTATGAAATGGTCC
1 TGCTCACACGACCTATGAAATGGTCC
*
32553145 TGCTTACACGA
1 TGCTCACACGA
32553156 GCTGTGGGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 24 0.73
26 9 0.27
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (26 bp):
TGCTCACACGACCTATGAAATGGTCC
Found at i:32553414 original size:159 final size:158
Alignment explanation
Indices: 32553121--32553451 Score: 430
Period size: 159 Copynumber: 2.1 Consensus size: 158
32553111 AAATGGTCCT
* * * * * *
32553121 CTCACACGACCTATGAAATGGTCCTGCTTACACGAGCTGTGGGTCGAGATGTGGGGCTACACGAT
1 CTCACACGAGCTGTGAAATGGTCCTGCTAACACAAGCTGTGGGTCAAGATGTGAGGCTACACGAT
* * * * *
32553186 GCTGCTCACACAAGCTGTGGAGAGTCCGCAATAAATGCAGGACCTCAACCATCGGTAAGATATCT
66 GCTGCTCACACAAGCTATGGAGAATCCGCAACAAATGCAGGACCTCAACCATCGGTAAGACATCC
32553251 AAGACCAGCACCCATATAACCTATAATG
131 AAGACCAGCACCCATATAACCTATAATG
* * *
32553279 CTCACACGAGCTGTGAAATGGGT-CTGCTAACACAAGCTGTGTGTCAAGATGTTTAGGCTACGCG
1 CTCACACGAGCTGTGAAAT-GGTCCTGCTAACACAAGCTGTGGGTCAAGATG-TGAGGCTACACG
** * * * * * * *
32553343 ATTTTGCTCACACGAGCTATGGAGAATCCGCAACCAATGTAGGATCTTAGCCATCGGTAGGACAT
64 ATGCTGCTCACACAAGCTATGGAGAATCCGCAACAAATGCAGGACCTCAACCATCGGTAAGACAT
32553408 CCAAGACCAGCACCCATATAACCTATAATG
129 CCAAGACCAGCACCCATATAACCTATAATG
32553438 CTCACACGAGCTGT
1 CTCACACGAGCTGT
32553452 AACTATAACA
Statistics
Matches: 148, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
158 41 0.28
159 107 0.72
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (158 bp):
CTCACACGAGCTGTGAAATGGTCCTGCTAACACAAGCTGTGGGTCAAGATGTGAGGCTACACGAT
GCTGCTCACACAAGCTATGGAGAATCCGCAACAAATGCAGGACCTCAACCATCGGTAAGACATCC
AAGACCAGCACCCATATAACCTATAATG
Found at i:32555736 original size:27 final size:27
Alignment explanation
Indices: 32555602--32555725 Score: 221
Period size: 27 Copynumber: 4.6 Consensus size: 27
32555592 GGCTGTTACA
*
32555602 CTGTTTCTGGCTCAAAAGAGTGATATT
1 CTGTTTCTGGCTCAAAAGAGTGATACT
*
32555629 CTGTTTCTGGCTCAAAAGAGTGATATT
1 CTGTTTCTGGCTCAAAAGAGTGATACT
32555656 CTGTTTCTGGCTCAAAAGAGTGATACT
1 CTGTTTCTGGCTCAAAAGAGTGATACT
32555683 CTGTTTCTGGCTCAAAAGAGTGATACT
1 CTGTTTCTGGCTCAAAAGAGTGATACT
*
32555710 ATGTTTCTGGCTCAAA
1 CTGTTTCTGGCTCAAA
32555726 GAAGCAATAC
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGTTTCTGGCTCAAAAGAGTGATACT
Found at i:32559127 original size:16 final size:17
Alignment explanation
Indices: 32559108--32559143 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
32559098 ACTTCAGGGA
32559108 ATATG-CCAAAATATTC
1 ATATGTCCAAAATATTC
*
32559124 ATATGTCCAAAATCTTC
1 ATATGTCCAAAATATTC
32559141 ATA
1 ATA
32559144 ATTGTTATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.33
Consensus pattern (17 bp):
ATATGTCCAAAATATTC
Found at i:32561346 original size:31 final size:32
Alignment explanation
Indices: 32561273--32561346 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 32
32561263 GTAACGAAAT
* * *
32561273 ATAAGTTCAGGTACCAACTAGGTACTTTTTTGG
1 ATAAATTCAAGTACCAACTAAGTAC-TTTTTGG
*
32561306 ACAAATTCAAGTACCAACTAAGTAC-TTTTGG
1 ATAAATTCAAGTACCAACTAAGTACTTTTTGG
*
32561337 ATAACTTCAA
1 ATAAATTCAA
32561347 AGGGAAAGCT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 14 0.40
33 21 0.60
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (32 bp):
ATAAATTCAAGTACCAACTAAGTACTTTTTGG
Found at i:32567848 original size:463 final size:462
Alignment explanation
Indices: 32566938--32567863 Score: 1717
Period size: 463 Copynumber: 2.0 Consensus size: 462
32566928 ACGGTGTCTA
*
32566938 TCTGTAAATTATCCCCTAACGATGCTGCTCACATGAGCTGTCGAGAATATGCATTCAAGCATAAA
1 TCTGTAAATTATCCCCTAACGATGCTGCTCACACGAGCTGTCGAGAATATGCATTCAAGCATAAA
* * * *
32567003 TCCCAACCATCGTAGGGCCTATAATCTATCTAAGATTTCATATCTCTTTTTCGACTCACGATGCT
66 TCCCAACCATCATAAGGCCTATAATCCATCTAAGATTTCATATCTCTTTTCCGACTCACGATGCT
*
32567068 GCTCACACAAGCTGTCGAAGACTCACAACATATGCGATAACTCAGCCATCGATACGGTATCTGTG
131 GCTCACACAAGCTGTCGAAGACTCACAACATATGCGATAACTCAGCCATCGATACGGTATCTATG
*
32567133 CATATAACTATTTCCCTAACGATGCTACTCACATGACTGTCGAGAATATGCACTTATGCATAAAT
196 AATATAACTATTTCCCTAACGATGCTACTCACATGACTGTCGAGAATATGCACTTATGCATAAAT
32567198 CCCAGCCATCATAGGACCTGTAATCCATTCTTGGATTCATTTCTCATTTCCCGACTCACGACGCT
261 CCCAGCCATCATAGGACCTGTAATCCATTCTTGGATTCATTTCTCATTTCCCGACTCACGACGCT
32567263 GCTCACACGAGCTGTCGAGGATTCGCAGCATATGGGGTACCTCAGCTGTTGCGTCGGTTTCAAAT
326 GCTCACACGAGCTGTCGAGGATTCGCAGCATATGGGGTACCTCAGCTGTTGCGTCGGTTTCAAAT
32567328 CACCAACTCAAAGCCTGATATCTCTTTCATCTTTTCTTTTTCACCTTTCTCAATTTCAAGTACCA
391 CACCAACTCAAAGCCTGATATCTCTTTCATCTTTTCTTTTTCACCTTTCTCAATTTCAAGTACCA
32567393 TAATCTG
456 TAATCTG
*
32567400 TCTGTAAATTGTCCCCTAACGATGCTGCTCACACGAGCTGTCGAGAATATGCATTCAAGCATAAA
1 TCTGTAAATTATCCCCTAACGATGCTGCTCACACGAGCTGTCGAGAATATGCATTCAAGCATAAA
* *
32567465 TCCCAGCCATCATAAGGCCTATAATCCATTTAAGATTTCATATCTCTTTTCCGACTCACGATGCT
66 TCCCAACCATCATAAGGCCTATAATCCATCTAAGATTTCATATCTCTTTTCCGACTCACGATGCT
32567530 GCTCACACAAGCTGTCGAAGACTCACAACATATGCGATAACTCAGCCATCGATACGGTATCTATG
131 GCTCACACAAGCTGTCGAAGACTCACAACATATGCGATAACTCAGCCATCGATACGGTATCTATG
* *
32567595 AATATAACTATTTCTCTAACGATGCTACTCACATGAATTGTCGAGAATATGCACTTATGCATAAA
196 AATATAACTATTTCCCTAACGATGCTACTCACATG-ACTGTCGAGAATATGCACTTATGCATAAA
* *
32567660 TCCCAGCCATCATATGACCTTTAATCCATTCTTGGATTCATTTCTCATTTCCCGACTCACGACGC
260 TCCCAGCCATCATAGGACCTGTAATCCATTCTTGGATTCATTTCTCATTTCCCGACTCACGACGC
32567725 TGCTCACACGAGCTGTCGAGGATTCGCAGCATATGGGGTACCTCAGCTGTTGCGTCGGTTTCAAA
325 TGCTCACACGAGCTGTCGAGGATTCGCAGCATATGGGGTACCTCAGCTGTTGCGTCGGTTTCAAA
32567790 TCACCAACTCAAAGCCTGATATCTCTTTCATCTTTTCTTTTTCACCTTTCTCAATTTCAAGTACC
390 TCACCAACTCAAAGCCTGATATCTCTTTCATCTTTTCTTTTTCACCTTTCTCAATTTCAAGTACC
32567855 ATAATCTG
455 ATAATCTG
32567863 T
1 T
32567864 TTTGTAACAA
Statistics
Matches: 449, Mismatches: 14, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
462 219 0.49
463 230 0.51
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (462 bp):
TCTGTAAATTATCCCCTAACGATGCTGCTCACACGAGCTGTCGAGAATATGCATTCAAGCATAAA
TCCCAACCATCATAAGGCCTATAATCCATCTAAGATTTCATATCTCTTTTCCGACTCACGATGCT
GCTCACACAAGCTGTCGAAGACTCACAACATATGCGATAACTCAGCCATCGATACGGTATCTATG
AATATAACTATTTCCCTAACGATGCTACTCACATGACTGTCGAGAATATGCACTTATGCATAAAT
CCCAGCCATCATAGGACCTGTAATCCATTCTTGGATTCATTTCTCATTTCCCGACTCACGACGCT
GCTCACACGAGCTGTCGAGGATTCGCAGCATATGGGGTACCTCAGCTGTTGCGTCGGTTTCAAAT
CACCAACTCAAAGCCTGATATCTCTTTCATCTTTTCTTTTTCACCTTTCTCAATTTCAAGTACCA
TAATCTG
Found at i:32586379 original size:9 final size:9
Alignment explanation
Indices: 32586361--32586412 Score: 58
Period size: 9 Copynumber: 6.2 Consensus size: 9
32586351 TAAATGTTTT
32586361 AATA-AATA
1 AATATAATA
32586369 AATATAATA
1 AATATAATA
32586378 AATATAAT-
1 AATATAATA
32586386 AATA-AATA
1 AATATAATA
*
32586394 TA-ATAATA
1 AATATAATA
*
32586402 AATAAAATA
1 AATATAATA
32586411 AA
1 AA
32586413 AAAAGGAAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
7 4 0.11
8 14 0.38
9 19 0.51
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (9 bp):
AATATAATA
Found at i:32586389 original size:12 final size:12
Alignment explanation
Indices: 32586360--32586411 Score: 77
Period size: 12 Copynumber: 4.2 Consensus size: 12
32586350 CTAAATGTTT
32586360 TAATAAATAAATA
1 TAATAAATAAA-A
*
32586373 TAATAAATATAA
1 TAATAAATAAAA
*
32586385 TAATAAATATAA
1 TAATAAATAAAA
32586397 TAATAAATAAAA
1 TAATAAATAAAA
32586409 TAA
1 TAA
32586412 AAAAAGGAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
12 27 0.73
13 10 0.27
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
TAATAAATAAAA
Found at i:32586391 original size:21 final size:22
Alignment explanation
Indices: 32586360--32586412 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
32586350 CTAAATGTTT
*
32586360 TAATAAATAAATATAATAA-ATA
1 TAAT-AATAAATATAATAATAAA
32586382 TAATAATAAATATAATAATAAA
1 TAATAATAAATATAATAATAAA
32586404 TAA-AATAAA
1 TAATAATAAA
32586413 AAAAGGAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 20 0.69
22 9 0.31
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (22 bp):
TAATAATAAATATAATAATAAA
Found at i:32587484 original size:60 final size:58
Alignment explanation
Indices: 32587381--32587630 Score: 255
Period size: 60 Copynumber: 4.3 Consensus size: 58
32587371 CTCAACTTTC
* * * *
32587381 CAAAAATTACATTTT-A-CCCTCGAACTTTTCT-AAAATTATATTTTGACTCCCAAACTTTTT
1 CAAAAATTACATTTTAACCCCT-AAAC--TTCTAAAAATTACATTTTAAC-CCCAAAC-TTCT
32587441 C-AAAATTACATTTTAACCCCTAAACTTCATAAAAATTACATTTTAACCACCAAACTT-T
1 CAAAAATTACATTTTAACCCCTAAACTTC-TAAAAATTACATTTTAACC-CCAAACTTCT
* * * **
32587499 ACAAAAATTACATTTTAACCCTTAAACTTTTTTAAAATT-CTATTTTAACCTTAAACTTCT
1 -CAAAAATTACATTTTAACCCCTAAAC-TTCTAAAAATTAC-ATTTTAACCCCAAACTTCT
*
32587559 CAAAAATTACATTTT--CCCCTAAACTTCTAAAAATTACATTTTTACCCCCAAACTTCT
1 CAAAAATTACATTTTAACCCCTAAACTTCTAAAAATTACA-TTTTAACCCCAAACTTCT
32587616 CAAAAATTACATTTT
1 CAAAAATTACATTTT
32587631 TGCCCCCAAA
Statistics
Matches: 164, Mismatches: 14, Indels: 27
0.80 0.07 0.13
Matches are distributed among these distances:
56 10 0.06
57 39 0.24
58 4 0.02
59 40 0.24
60 65 0.40
61 6 0.04
ACGTcount: A:0.38, C:0.22, G:0.01, T:0.38
Consensus pattern (58 bp):
CAAAAATTACATTTTAACCCCTAAACTTCTAAAAATTACATTTTAACCCCAAACTTCT
Found at i:32587647 original size:29 final size:29
Alignment explanation
Indices: 32587374--32587660 Score: 212
Period size: 30 Copynumber: 9.7 Consensus size: 29
32587364 AAGGTTCCTC
* *
32587374 AACTTTCCAAAAATTACA-TTTTACCCTCG
1 AACTTT-CAAAAATTACATTTTTACCCCCA
* * * *
32587403 AACTTTTCTAAAATTATATTTTGACTCCCA
1 AAC-TTTCAAAAATTACATTTTTACCCCCA
* *
32587433 AACTTTTTC-AAAATTACATTTTAACCCCTA
1 AAC--TTTCAAAAATTACATTTTTACCCCCA
* *
32587463 AAC-TTCATAAAAATTACATTTTAACCACCA
1 AACTTTC--AAAAATTACATTTTTACCCCCA
* **
32587493 AACTTTACAAAAATTACATTTTAACCCTTA
1 AACTTT-CAAAAATTACATTTTTACCCCCA
** * **
32587523 AACTTTTTTAAAATT-C-TATTTTAACCTTA
1 AAC-TTTCAAAAATTACAT-TTTTACCCCCA
*
32587552 AACTTCTCAAAAATTACA-TTTT-CCCCTA
1 AACTT-TCAAAAATTACATTTTTACCCCCA
32587580 AAC-TTCTAAAAATTACATTTTTACCCCCA
1 AACTTTC-AAAAATTACATTTTTACCCCCA
*
32587609 AACTTCTCAAAAATTACATTTTTGCCCCCA
1 AACTT-TCAAAAATTACATTTTTACCCCCA
*
32587639 AACTTTCAAAAATCACCATTTT
1 AACTTTCAAAAATTA-CATTTT
32587661 GCCCTGAGCA
Statistics
Matches: 213, Mismatches: 26, Indels: 37
0.77 0.09 0.13
Matches are distributed among these distances:
26 2 0.01
27 14 0.07
28 14 0.07
29 53 0.25
30 117 0.55
31 12 0.06
32 1 0.00
ACGTcount: A:0.38, C:0.24, G:0.01, T:0.38
Consensus pattern (29 bp):
AACTTTCAAAAATTACATTTTTACCCCCA
Found at i:32589064 original size:19 final size:19
Alignment explanation
Indices: 32589040--32589078 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
32589030 AATGTTTTTC
* *
32589040 TTTTATTTTTTTTATATTT
1 TTTTATTTATATTATATTT
32589059 TTTTATTTATATTATATTT
1 TTTTATTTATATTATATTT
32589078 T
1 T
32589079 CAAGATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTATTTATATTATATTT
Found at i:32590304 original size:19 final size:20
Alignment explanation
Indices: 32590280--32590338 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 20
32590270 ATTTGATCTG
32590280 TTGACTTTGA-TAGTTGACT
1 TTGACTTTGACTAGTTGACT
* *
32590299 TTGACTTTAACCA-TTGACT
1 TTGACTTTGACTAGTTGACT
*
32590318 TTGCCTTTGACT-GTTGACT
1 TTGACTTTGACTAGTTGACT
32590337 TT
1 TT
32590339 TCTTTGACCA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 32 0.97
20 1 0.03
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (20 bp):
TTGACTTTGACTAGTTGACT
Found at i:32590338 original size:13 final size:13
Alignment explanation
Indices: 32590271--32590338 Score: 61
Period size: 13 Copynumber: 5.2 Consensus size: 13
32590261 ATTTTGACCA
32590271 TTTGATCTGTTGAC
1 TTTGA-CTGTTGAC
32590285 TTTGA-TAGTTGAC
1 TTTGACT-GTTGAC
*
32590298 TTTGACT-TTAACC
1 TTTGACTGTTGA-C
* *
32590311 ATTGACT-TTGCC
1 TTTGACTGTTGAC
32590323 TTTGACTGTTGAC
1 TTTGACTGTTGAC
32590336 TTT
1 TTT
32590339 TCTTTGACCA
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
12 11 0.25
13 27 0.61
14 6 0.14
ACGTcount: A:0.18, C:0.16, G:0.18, T:0.49
Consensus pattern (13 bp):
TTTGACTGTTGAC
Found at i:32594293 original size:3 final size:3
Alignment explanation
Indices: 32594287--32594332 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
32594277 GGAAAAAAAT
32594287 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
32594333 AACTTGTGTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:32595049 original size:23 final size:22
Alignment explanation
Indices: 32595023--32595076 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
32595013 TATGAAATAT
32595023 GAACCCTATTAGGTATGATT-TGC
1 GAACCCTATTAGG-ATG-TTATGC
* *
32595046 GAACCCAACTAGGATGTTATGC
1 GAACCCTATTAGGATGTTATGC
32595068 GAACCCTAT
1 GAACCCTAT
32595077 AAGCTATGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 2 0.08
22 13 0.50
23 11 0.42
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (22 bp):
GAACCCTATTAGGATGTTATGC
Found at i:32595162 original size:18 final size:18
Alignment explanation
Indices: 32595132--32595176 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
32595122 GAAAAACACC
*
32595132 GTGTTAT-TTTGTGTATT
1 GTGTTATATTTGTGTAAT
32595149 GTGTTATATTTGTGTAAT
1 GTGTTATATTTGTGTAAT
32595167 GTGTTATATT
1 GTGTTATATT
32595177 GTGAACAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 7 0.27
18 19 0.73
ACGTcount: A:0.18, C:0.00, G:0.22, T:0.60
Consensus pattern (18 bp):
GTGTTATATTTGTGTAAT
Found at i:32595243 original size:18 final size:18
Alignment explanation
Indices: 32595215--32595263 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
32595205 TATTATGGAA
* **
32595215 AACTGTGTTAATTTGGTG
1 AACTGTATTAATTTGACG
* *
32595233 ATCTGTATTAATATGACG
1 AACTGTATTAATTTGACG
32595251 AACTGTATTAATT
1 AACTGTATTAATT
32595264 AGCCAAACTG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (18 bp):
AACTGTATTAATTTGACG
Found at i:32596728 original size:3 final size:3
Alignment explanation
Indices: 32596720--32596751 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
32596710 AAAACCTTGA
32596720 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
32596752 GCTAAAACTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:32596971 original size:11 final size:11
Alignment explanation
Indices: 32596957--32596994 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
32596947 AATAGACATT
32596957 AAATTAAATAA
1 AAATTAAATAA
*
32596968 AAATGAAATAA
1 AAATTAAATAA
*
32596979 GAA-TAAATAA
1 AAATTAAATAA
32596989 AAATTA
1 AAATTA
32596995 TACAAGTGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (11 bp):
AAATTAAATAA
Found at i:32597851 original size:145 final size:142
Alignment explanation
Indices: 32597548--32598015 Score: 549
Period size: 145 Copynumber: 3.2 Consensus size: 142
32597538 AAATTTTCTT
32597548 TTTCTTTTTAAAAACAAAATCACC-ACTTTTCTTAAAAATCAAAGTTTTTTATTTCGAAATAGTT
1 TTTC-TTTTAAAAA-AAAA--ACCTACTTTTCTTAAAAATCAAAG--TTTTATTTCGAAATAGTT
* * * * *
32597612 AAAAAAATCAAACATTATTTAAAAAATTAAACTTTTCTCTTTAAAATAATTAAAAAACAGATTTT
60 AAAAAAATCAAACTTTGTTTAAAAATTTAAACTTTTC-CTTTAAAATGACTAAAAAACAGATTTT
32597677 TATTTTTAAAAATCTAAAC
124 TATTTTTAAAAATCTAAAC
*
32597696 TTTCATTTAAAAAAAAAACTCTACTTTTCTTAAAAATCAAAGTTTTCATTTCGAAATAGTTAAAA
1 TTTCTTTTAAAAAAAAAAC-CTACTTTTCTTAAAAATCAAAGTTTT-ATTTCGAAATAGTTAAAA
* * * *
32597761 AAATCAAATTTTGTTTAAAAATTTAAACTATTTCCTTTAAAATGACAAAAAAATAAATTTTTATT
64 AAATCAAACTTTGTTTAAAAATTTAAACT-TTTCCTTTAAAATGACTAAAAAACAGATTTTTATT
* *
32597826 TTTAAAAAT-TTAAG
128 TTTAAAAATCTAAAC
* * *
32597840 TTT-TTTGT----TAAAAA--TACTCTTCTTAAAAATCAAAATTTTATTTCGAAATAGTTTAAAA
1 TTTCTTT-TAAAAAAAAAACCTACTTTTCTTAAAAATCAAAGTTTTATTTCGAAATAG-TT-AAA
* *
32597898 AAAATCAAAACTTTGTTTAAAAATTTAAAATTTTTCCTTTAAAAGGACTAAAAAACAGATTTTTA
63 AAAATC-AAACTTTGTTTAAAAATTT-AAACTTTTCCTTTAAAATGACTAAAAAACAGATTTTTA
32597963 TTTTTAAAAATCTAAAC
126 TTTTTAAAAATCTAAAC
* * *
32597980 TTTGTTTTAAAAAAAAATCACTACTTTTTTTAAAAA
1 TTTCTTTTAAAAAAAAAAC-CTACTTTTCTTAAAAA
32598016 AAATCACTAC
Statistics
Matches: 274, Mismatches: 28, Indels: 37
0.81 0.08 0.11
Matches are distributed among these distances:
136 12 0.04
137 25 0.09
138 9 0.03
139 58 0.21
140 16 0.06
141 3 0.01
143 2 0.01
144 17 0.06
145 79 0.29
146 28 0.10
147 21 0.08
148 4 0.01
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.41
Consensus pattern (142 bp):
TTTCTTTTAAAAAAAAAACCTACTTTTCTTAAAAATCAAAGTTTTATTTCGAAATAGTTAAAAAA
ATCAAACTTTGTTTAAAAATTTAAACTTTTCCTTTAAAATGACTAAAAAACAGATTTTTATTTTT
AAAAATCTAAAC
Found at i:32597925 original size:30 final size:32
Alignment explanation
Indices: 32597864--32597927 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 32
32597854 TACTCTTCTT
* *
32597864 AAAAATCAAAATTTTATTTCGAAATAGTTTAAA
1 AAAAATCAAAACTTTATTTC-AAATAATTTAAA
*
32597897 AAAAATCAAAACTTTGTTT-AAA-AATTTAAA
1 AAAAATCAAAACTTTATTTCAAATAATTTAAA
32597927 A
1 A
32597928 TTTTTCCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 8 0.29
31 3 0.11
33 17 0.61
ACGTcount: A:0.55, C:0.06, G:0.05, T:0.34
Consensus pattern (32 bp):
AAAAATCAAAACTTTATTTCAAATAATTTAAA
Found at i:32598010 original size:23 final size:22
Alignment explanation
Indices: 32597978--32598044 Score: 107
Period size: 23 Copynumber: 2.9 Consensus size: 22
32597968 AAAAATCTAA
32597978 ACTTTGTTTTAAAAAAAAATCACT
1 ACTTT-TTTT-AAAAAAAATCACT
32598002 ACTTTTTTTAAAAAAAATCACT
1 ACTTTTTTTAAAAAAAATCACT
32598024 ACTTTTTTTTAAAAAAAATCA
1 AC-TTTTTTTAAAAAAAATCA
32598045 AAACTTTTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
22 15 0.36
23 22 0.52
24 5 0.12
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.40
Consensus pattern (22 bp):
ACTTTTTTTAAAAAAAATCACT
Found at i:32598050 original size:23 final size:23
Alignment explanation
Indices: 32597968--32598061 Score: 100
Period size: 23 Copynumber: 4.1 Consensus size: 23
32597958 TTTTATTTTT
* *
32597968 AAAAATCTAAACTTTGTTTTAAAA
1 AAAAATCAAAACTTT-TTTTTAAA
**
32597992 AAAAATCACTAC-TTTTTTTAAA
1 AAAAATCAAAACTTTTTTTTAAA
**
32598014 AAAAATCACTACTTTTTTTTAAA
1 AAAAATCAAAACTTTTTTTTAAA
* *
32598037 AAAAATCAAAACTTTTATTTCAA
1 AAAAATCAAAACTTTTTTTTAAA
32598060 AA
1 AA
32598062 TAGTTAAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
22 19 0.31
23 33 0.54
24 9 0.15
ACGTcount: A:0.49, C:0.12, G:0.01, T:0.38
Consensus pattern (23 bp):
AAAAATCAAAACTTTTTTTTAAA
Found at i:32606905 original size:29 final size:29
Alignment explanation
Indices: 32606863--32606920 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
32606853 TAGCCAGATA
32606863 GACTTGTTTTCCGAGGGTCAAGTGTGGTG
1 GACTTGTTTTCCGAGGGTCAAGTGTGGTG
32606892 GACTTGTTTTCCGAGGGTCAAGTGTGGTG
1 GACTTGTTTTCCGAGGGTCAAGTGTGGTG
32606921 AAAGCTGGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.14, C:0.14, G:0.38, T:0.34
Consensus pattern (29 bp):
GACTTGTTTTCCGAGGGTCAAGTGTGGTG
Found at i:32607090 original size:24 final size:26
Alignment explanation
Indices: 32607063--32607111 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
32607053 AGGGGTGGTC
*
32607063 GGAGTGTTTTTTGAAG-A-GGGTTTA
1 GGAGTGTTTTTGGAAGCACGGGTTTA
32607087 GGAGTGTTTTTGGAAGCACGGGTTT
1 GGAGTGTTTTTGGAAGCACGGGTTT
32607112 TATCCATGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 15 0.68
25 1 0.05
26 6 0.27
ACGTcount: A:0.18, C:0.04, G:0.39, T:0.39
Consensus pattern (26 bp):
GGAGTGTTTTTGGAAGCACGGGTTTA
Found at i:32617989 original size:15 final size:16
Alignment explanation
Indices: 32617941--32617977 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
32617931 GGGGAATGTG
32617941 TAAA-AGACAT-AAATA
1 TAAATAGACATGAAA-A
32617956 TAAATAGACATGAAAA
1 TAAATAGACATGAAAA
32617972 TAAATA
1 TAAATA
32617978 TAGATGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 4 0.20
16 13 0.65
17 3 0.15
ACGTcount: A:0.65, C:0.05, G:0.08, T:0.22
Consensus pattern (16 bp):
TAAATAGACATGAAAA
Found at i:32618667 original size:27 final size:27
Alignment explanation
Indices: 32618637--32618688 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
32618627 TAAACTTTTA
32618637 AAAAATAGATTTTTATTTTTAAAAATC
1 AAAAATAGATTTTTATTTTTAAAAATC
* ***
32618664 AAAACTTTCTTTTTATTTTTAAAAA
1 AAAAATAGATTTTTATTTTTAAAAA
32618689 AATCACTACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (27 bp):
AAAAATAGATTTTTATTTTTAAAAATC
Found at i:32619075 original size:149 final size:146
Alignment explanation
Indices: 32618635--32619145 Score: 613
Period size: 149 Copynumber: 3.4 Consensus size: 146
32618625 TTTAAACTTT
* *
32618635 TAAAAAATAGATTTTTATTTTTAAAAATCAAAACTTTCTTTTTATTTTTAAAAAAATCACTACTT
1 TAAAAAATAAATTTTTATTTTTAAAAATCTAAACTTTC--TTT-TTTTTAAAAAAATCACTACTT
* * * * *
32618700 TTCTTAAAAAT-CAAAGTTTTTATTTGAAAATAGTAAAAAAAATTAAAATTTGTTTAAAAATTTA
63 TTCTTAAAAATAAAAAATTTAT-TTTG-AAATAGTTAAAAAAATAAAAATTTGTTTAAAAATTTA
*
32618764 AACATTTTCCTTTAAAATGAG
126 AACATTTTCCTTTAAAATGAC
* * * * **
32618785 TAAAAAACATATTTTTATTTTTAAAAATTTAAACTTTCATTTTTTTAAATTTAA--ACT-CTTTT
1 TAAAAAATAAATTTTTATTTTTAAAAATCTAAACTTTCTTTTTTTTAAA-AAAATCACTACTTTT
* * *
32618847 CTTAGAAATAAAAAATGTTATTTTGAAATAGTTAAAAAAAATTAAAACTTTATTTAAAAATTTAA
65 CTTAAAAATAAAAAAT-TTATTTTGAAATAGTT-AAAAAAA-TAAAAATTTGTTTAAAAATTTAA
* *
32618912 AAATTTTCCTTTAAAATTAC
127 ACATTTTCCTTTAAAATGAC
32618932 TAAAAAATAAATTTTTATTTTTAAAAATCTAAACTTTC-TTTTTTTAAAAAACATCACTACTTTT
1 TAAAAAATAAATTTTTATTTTTAAAAATCTAAACTTTCTTTTTTTTAAAAAA-ATCACTACTTTT
* **
32618996 GTTAAAAATAAAAAAATTTATTGTTGAAATAGTTAAAAAAATAAAAATTTGTTTAAAAAAGGTAA
65 CTTAAAAAT-AAAAAATTTATT-TTGAAATAGTTAAAAAAATAAAAATTTGTTT-AAAAATTTAA
*
32619061 ACTTTTTCCTTTAAAATGAC
127 ACATTTTCCTTTAAAATGAC
* *
32619081 TAAAAAA-AAGATTTTTATTTTTAAAAATTTAAACTTT-TTTTTTTTACAAAAAATCACTCCTTT
1 TAAAAAATAA-ATTTTTATTTTTAAAAATCTAAACTTTCTTTTTTTTA-AAAAAATCACTACTTT
32619144 TC
64 TC
32619146 CTAAGATCAA
Statistics
Matches: 311, Mismatches: 35, Indels: 31
0.82 0.09 0.08
Matches are distributed among these distances:
145 21 0.07
146 29 0.09
147 83 0.27
148 20 0.06
149 101 0.32
150 57 0.18
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (146 bp):
TAAAAAATAAATTTTTATTTTTAAAAATCTAAACTTTCTTTTTTTTAAAAAAATCACTACTTTTC
TTAAAAATAAAAAATTTATTTTGAAATAGTTAAAAAAATAAAAATTTGTTTAAAAATTTAAACAT
TTTCCTTTAAAATGAC
Found at i:32620015 original size:17 final size:17
Alignment explanation
Indices: 32619995--32620077 Score: 121
Period size: 17 Copynumber: 4.9 Consensus size: 17
32619985 CAATGTGGTA
32619995 TGAATGAATTGTTATAT
1 TGAATGAATTGTTATAT
*
32620012 TGAATGAATTATTATAT
1 TGAATGAATTGTTATAT
* *
32620029 TGAATGAACTATTATAT
1 TGAATGAATTGTTATAT
* *
32620046 TGTATGAACTGTTATAT
1 TGAATGAATTGTTATAT
32620063 TGAATGAATTGTTAT
1 TGAATGAATTGTTAT
32620078 TATACATGAA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 60 1.00
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.46
Consensus pattern (17 bp):
TGAATGAATTGTTATAT
Found at i:32620033 original size:34 final size:34
Alignment explanation
Indices: 32619995--32620094 Score: 123
Period size: 34 Copynumber: 2.9 Consensus size: 34
32619985 CAATGTGGTA
*
32619995 TGAATGAATTGTTATATTGAATGAATTATTATAT
1 TGAATGAATTGTTATATTGAATGAACTATTATAT
* * * *
32620029 TGAATGAACTATTATATTGTATGAACTGTTATAT
1 TGAATGAATTGTTATATTGAATGAACTATTATAT
32620063 TGAATGAATTGTTAT-TAT-ACATGAACTATTAT
1 TGAATGAATTGTTATAT-TGA-ATGAACTATTAT
32620095 TTTATGCGAA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
33 1 0.02
34 54 0.98
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.45
Consensus pattern (34 bp):
TGAATGAATTGTTATATTGAATGAACTATTATAT
Found at i:32620059 original size:51 final size:51
Alignment explanation
Indices: 32619998--32620094 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
32619988 TGTGGTATGA
*
32619998 ATGAATTGTTATATTGAATGAATTATTA-TATTGA-ATGAACTATTATATTGT
1 ATGAACTGTTATATTGAATGAATTATTATTA-T-ACATGAACTATTATATTGT
*
32620049 ATGAACTGTTATATTGAATGAATTGTTATTATACATGAACTATTAT
1 ATGAACTGTTATATTGAATGAATTATTATTATACATGAACTATTAT
32620095 TTTATGCGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
50 1 0.02
51 39 0.93
52 2 0.05
ACGTcount: A:0.37, C:0.04, G:0.13, T:0.45
Consensus pattern (51 bp):
ATGAACTGTTATATTGAATGAATTATTATTATACATGAACTATTATATTGT
Found at i:32620123 original size:18 final size:17
Alignment explanation
Indices: 32620096--32620144 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
32620086 AACTATTATT
*
32620096 TTATGCGAATTGTCTAA
1 TTATGTGAATTGTCTAA
* *
32620113 TCTATGTGAATTGTTTAG
1 T-TATGTGAATTGTCTAA
32620131 TTCATGTGAATTGT
1 TT-ATGTGAATTGT
32620145 TATCTTGTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.47
Consensus pattern (17 bp):
TTATGTGAATTGTCTAA
Found at i:32623105 original size:26 final size:26
Alignment explanation
Indices: 32623063--32623116 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
32623053 ATTCTGGGCG
32623063 CAATTCTGGACACGTTCATGCAGCGA
1 CAATTCTGGACACGTTCATGCAGCGA
* *
32623089 CAATTCTGTACATGTTCATGCAGCGA
1 CAATTCTGGACACGTTCATGCAGCGA
32623115 CA
1 CA
32623117 TTTTTGGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
CAATTCTGGACACGTTCATGCAGCGA
Found at i:32623147 original size:37 final size:38
Alignment explanation
Indices: 32623106--32623269 Score: 124
Period size: 37 Copynumber: 4.4 Consensus size: 38
32623096 GTACATGTTC
*
32623106 ATGCAGCGACATTTTTGGGTGCAA-TTGAAGAATACTT
1 ATGCAGCGACAGTTTTGGGTGCAATTTGAAGAATACTT
* * * *
32623143 ATGCAGTGATAGTTTTGGATGCAATTTGAAGAATATTT
1 ATGCAGCGACAGTTTTGGGTGCAATTTGAAGAATACTT
* * * * *
32623181 ATGTAGCGACAGTCTTGGGTTC-ATTTCAAAAATA-TT
1 ATGCAGCGACAGTTTTGGGTGCAATTTGAAGAATACTT
* ** * *
32623217 CCTGCAATGACAGTTTT-GGTGAAATTTG--GAAGTACTC
1 -ATGCAGCGACAGTTTTGGGTGCAATTTGAAGAA-TACTT
*
32623254 ATGCGGCGACAGTTTT
1 ATGCAGCGACAGTTTT
32623270 AGGCACAATC
Statistics
Matches: 95, Mismatches: 27, Indels: 11
0.71 0.20 0.08
Matches are distributed among these distances:
35 2 0.02
36 19 0.20
37 46 0.48
38 28 0.29
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.35
Consensus pattern (38 bp):
ATGCAGCGACAGTTTTGGGTGCAATTTGAAGAATACTT
Found at i:32624505 original size:17 final size:17
Alignment explanation
Indices: 32624483--32624519 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
32624473 ATGCAGCGAA
* *
32624483 AATAAAAGTGTAGTGAC
1 AATAAAAATGTAGGGAC
32624500 AATAAAAATGTAGGGAC
1 AATAAAAATGTAGGGAC
32624517 AAT
1 AAT
32624520 TATACTACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.05, G:0.22, T:0.22
Consensus pattern (17 bp):
AATAAAAATGTAGGGAC
Found at i:32625216 original size:12 final size:12
Alignment explanation
Indices: 32625199--32625223 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32625189 TTTGCCTCGA
32625199 CATCTATTTCTT
1 CATCTATTTCTT
32625211 CATCTATTTCTT
1 CATCTATTTCTT
32625223 C
1 C
32625224 CTTCACACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.28, G:0.00, T:0.56
Consensus pattern (12 bp):
CATCTATTTCTT
Found at i:32627834 original size:37 final size:38
Alignment explanation
Indices: 32627793--32627890 Score: 110
Period size: 38 Copynumber: 2.6 Consensus size: 38
32627783 ATACATGTTC
* *
32627793 ATGCAGCGACATTCTTGGGTGCAA-TTGAAGAATACTT
1 ATGCAGTGAAATTCTTGGGTGCAATTTGAAGAATACTT
* * * *
32627830 ATGCAGTGATAGTTC-TGGATGCAATTTGATGAATATTT
1 ATGCAGTGA-AATTCTTGGGTGCAATTTGAAGAATACTT
*
32627868 ATGCAGTGAAAGTCTTGGGTGCA
1 ATGCAGTGAAATTCTTGGGTGCA
32627891 TTCCGAAAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
37 19 0.39
38 30 0.61
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (38 bp):
ATGCAGTGAAATTCTTGGGTGCAATTTGAAGAATACTT
Found at i:32637636 original size:21 final size:21
Alignment explanation
Indices: 32637612--32637653 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
32637602 GTGCATTCAG
32637612 TTGAGGACT-CTGATTGAAATT
1 TTGAGG-CTGCTGATTGAAATT
* *
32637633 TTGATGCTGCTGATTGTAATT
1 TTGAGGCTGCTGATTGAAATT
32637654 CCTTTGTCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.43
Consensus pattern (21 bp):
TTGAGGCTGCTGATTGAAATT
Found at i:32644307 original size:14 final size:14
Alignment explanation
Indices: 32644276--32644351 Score: 55
Period size: 15 Copynumber: 5.3 Consensus size: 14
32644266 GCGAGAAAAA
32644276 TAAATGCAA-AAATT
1 TAAATGCAAGAAA-T
*
32644290 TAAATGCAAGAAAC
1 TAAATGCAAGAAAT
* *
32644304 TAAATTACAAGAATT
1 TAAA-TGCAAGAAAT
* *
32644319 TAAATGTAAGAAAA
1 TAAATGCAAGAAAT
* *
32644333 TAAATTGTAAGAAAG
1 TAAA-TGCAAGAAAT
32644348 TAAA
1 TAAA
32644352 CTGGTAAACA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
14 23 0.46
15 27 0.54
ACGTcount: A:0.58, C:0.05, G:0.12, T:0.25
Consensus pattern (14 bp):
TAAATGCAAGAAAT
Found at i:32644344 original size:29 final size:29
Alignment explanation
Indices: 32644272--32644345 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
32644262 TGGTGCGAGA
*
32644272 AAAATAAA-TGCAAAAATTTAAATGCAAG
1 AAAATAAATTGCAAGAATTTAAATGCAAG
* * *
32644300 AAACTAAATTACAAGAATTTAAATGTAAG
1 AAAATAAATTGCAAGAATTTAAATGCAAG
*
32644329 AAAATAAATTGTAAGAA
1 AAAATAAATTGCAAGAA
32644346 AGTAAACTGG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 7 0.18
29 31 0.82
ACGTcount: A:0.59, C:0.05, G:0.11, T:0.24
Consensus pattern (29 bp):
AAAATAAATTGCAAGAATTTAAATGCAAG
Found at i:32644821 original size:16 final size:17
Alignment explanation
Indices: 32644800--32644833 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32644790 TTATTGGAGA
*
32644800 TTAATT-TCAGTTAAAT
1 TTAATTATCAATTAAAT
32644816 TTAATTATCAATTAAAT
1 TTAATTATCAATTAAAT
32644833 T
1 T
32644834 GGATTTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.50
Consensus pattern (17 bp):
TTAATTATCAATTAAAT
Found at i:32655512 original size:20 final size:20
Alignment explanation
Indices: 32655483--32655526 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
32655473 ATTAGGTATG
32655483 AAAA-TGAAATTAAAGAAGA
1 AAAATTGAAATTAAAGAAGA
32655502 AAAATTGAAATTAAAGAAGA
1 AAAATTGAAATTAAAGAAGA
32655522 AAAAT
1 AAAAT
32655527 CACATTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.68, C:0.00, G:0.14, T:0.18
Consensus pattern (20 bp):
AAAATTGAAATTAAAGAAGA
Found at i:32656614 original size:24 final size:24
Alignment explanation
Indices: 32656582--32656661 Score: 142
Period size: 24 Copynumber: 3.3 Consensus size: 24
32656572 TTAAACTCTG
32656582 TCTGGGCTCGTAAGAGCTAATCAT
1 TCTGGGCTCGTAAGAGCTAATCAT
*
32656606 TCTGGGCTCATAAGAGCTAATCAT
1 TCTGGGCTCGTAAGAGCTAATCAT
32656630 TCTGGGCTCGTAAGAGCTAATCAT
1 TCTGGGCTCGTAAGAGCTAATCAT
*
32656654 TTTGGGCT
1 TCTGGGCT
32656662 TGTGTTGGCT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 53 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTGGGCTCGTAAGAGCTAATCAT
Found at i:32662368 original size:924 final size:913
Alignment explanation
Indices: 32660553--32662341 Score: 2801
Period size: 924 Copynumber: 1.9 Consensus size: 913
32660543 TTGCAAGATA
* * * * *
32660553 AGAATTTGAATAAGAGTTTTGTATTGAATGATGATTGATAAACATGAGGATTTGTGTGAATAAAT
1 AGAATTTAAATAAGAGTCTTATATTGAATGATGATTGATAAACATGAGGACTTCTGTGAATAAAT
* * *
32660618 GAATTCTGCATACTTGTTTTGGTAGAACCCTTACATGTATCGGTAGAAGTAGAGGGTAGGAGAGA
66 GAATTCTGAATACTTGTTTCGGTAGAACCCCTACATGTATCGGTAGAAGTAGAGGGTAGGAGAGA
* * **
32660683 GGTTATTCACTAACCTGAGTTGTATTGGTAGTTGGTACCGATAGTTTTGCCCATAAGAGTATCGG
131 GGTTATTCACTAACCTGAGTTGTATCGATAGTTGGTACAAATAGTTTTGCCCATAAGAGTATCGG
* *
32660748 TAGTTTATGTACTTGTATCGGTAGAAGTCTACACTATTTCATGAACTGTTTACTGACTTGACAAC
196 TAGTTTATGTACTTGTATCGGTAGAAATCTACACTATTTCATGAACTGTTTACTAACTTGACAAC
* * *
32660813 TACCGATACTTGTCCAACAGGTATTGGTAGAAGTCTCCTAGAATTGTGGAGATGAAAGTTTTACC
261 TACCGATACCTCTCCAACAGGTATCGGTAGAAGTCTCCTAGAATTGTGGAGATGAAAGTTTTACC
*
32660878 CTTATTGAGTTGATAAAAAAAGTAAGAATAACGAGTTATAACTGTATATATTTTATTAAATCAAG
326 CTTATTGAGTTGATAAAAAAAGTAAGAATAACGAGTTATAAATGTATATATTTTATTAAATCAAG
*
32660943 AATAATGTTGAAATAAGATTGAATAGGTAATGATTTGAGGCATGAATGCATATAAACTCGAAACC
391 AATAATGTTGAAATAAGATTGAATAGGTAACGATTTGAGGCATGAATGCATATAAACTCGAAACC
* **
32661008 CTAACCAGTGACGATGTTGGGTTTAGGTGTTATACAATGGTAGTAAGAATAATTGATTGGGTGGT
456 CTAACCAGCGACGATGTTGGGTTTAGGTACTATACAATGGTAGTAAGAATAATTGATTGGGTGGT
*
32661073 ACTGTGATATTATGGTTGATATGGAATATAGATGTCGTGATTTGTGATATGAATAATGATTCCTT
521 ACTGTGATATTATGGTTGATATGGAATATAGATGTCATGATTTGTGATATGAATAATGATTCCTT
32661138 CCGCAATGTAATGATAAGTATGTTTTAGTTATAGTTTGGTTAGCTAGTGGTGAGGATTGTGTGTT
586 CCGCAATGTAATGATAAGTATGTTTTAGTTATAGTTTGGTTAGCTAGTGGTGAGGATTGTGTGTT
* * * * *
32661203 TGACACACGGGACCTTGTGATCCCTGATGGAAGATATTTGTATGGGATTCCTAAGTTCTTGCATG
651 TGACACACAGGACCTTCTGATCCCTAATGGAAAATATTTGTACGGGATTCCTAAGTTCTTGCATG
* *
32661268 ATTGGATTTGATTATTATTTGATTGAAAGGTTGTAAATGAATGTGTAAAATTAAATGGAGTTAGT
716 ATTGAATTTGATTATTATTTAATTGAAAGGTTGTAAATGAATGTGTAAAATTAAATGGAGTTAGT
* * *
32661333 ATTCTGAGCTACAAGTTGTAATTGTATAAACTGTGATTGATTTGTATGTATAAAAAAACTCAAAA
781 ATTCTGAGCTAAAAGTTATAATTATATAAACTGTGATTGATTTGTATGTATAAAAAAACTCAAAA
*
32661398 AGTTCTGTAAACCCTAAGATCTTGGTCCGAATATGGTTTTTGGTTTTTGGGGGTTACATTTATCT
846 AGTTCTGTAAACCCTAAGATCTTGGTCCGAATA-GG--TATGGTTTTTGGGGGTTACATTTATCT
32661463 TATATG
908 TATATG
*
32661469 AGAATTTAAATAAGAGTCTTATATTGAATGATGATTGATAAACTTGAGGACTTCTGTGAATAAAT
1 AGAATTTAAATAAGAGTCTTATATTGAATGATGATTGATAAACATGAGGACTTCTGTGAATAAAT
*
32661534 GAATTCTGAATACTTGTTTCGGTAGAACCCCTGCATGTATCGGTAGAAGTAGAGGGTAGGAGAGA
66 GAATTCTGAATACTTGTTTCGGTAGAACCCCTACATGTATCGGTAGAAGTAGAGGGTAGGAGAGA
* *
32661599 GGTTATTCATTGACCTGAGTTGTATCGATAGTTGCATAATAAGTACAAATAGTTTTGCCCATAAG
131 GGTTATTCACTAACCTGAGTTGTATCGATAGTTG--------GTACAAATAGTTTTGCCCATAAG
* *
32661664 AGTATCGGTAGTTTATGTACTTGTATCGGTAGAAATCTGCACTATTTCTTGAACTGTTTACTAAC
188 AGTATCGGTAGTTTATGTACTTGTATCGGTAGAAATCTACACTATTTCATGAACTGTTTACTAAC
*
32661729 TTGACAACTACCGATACCTCTCCAACAGGTATCGGTAGAAGTCTCCTAGAATTGTGGAGATGACA
253 TTGACAACTACCGATACCTCTCCAACAGGTATCGGTAGAAGTCTCCTAGAATTGTGGAGATGAAA
* * *
32661794 TTTTTATCCTTATTGAGTTGATAAACAAAGTAAGAATAACGAGTTATAAATGTATATATTTTATT
318 GTTTTACCCTTATTGAGTTGATAAAAAAAGTAAGAATAACGAGTTATAAATGTATATATTTTATT
* *
32661859 AAATTAAGAATAATGTTGAAATAAGATTGAATAGGTAACGATTTGAGGCATGAATGCATATGAAC
383 AAATCAAGAATAATGTTGAAATAAGATTGAATAGGTAACGATTTGAGGCATGAATGCATATAAAC
* * * *
32661924 TCGGAACCCTAACC-GACGACGGTGTTGGGTTTGGGTACTATACAATGGTAGTGAGAATAATTGA
448 TCGAAACCCTAACCAG-CGACGATGTTGGGTTTAGGTACTATACAATGGTAGTAAGAATAATTGA
*
32661988 TGTAGCTTAGGTGGTATTGTGATATTATGGTTGATATGGAATATAGATGTCATGATTTGTGATAT
512 T-T-G----GGTGGTACTGTGATATTATGGTTGATATGGAATATAGATGTCATGATTTGTGATAT
* * * *
32662053 GAATATTGGTTCCTTCCGCAATGTAATGATAAGTATGTTTTGGTTATAGTTTGGTTTGCTAGTGG
571 GAATAATGATTCCTTCCGCAATGTAATGATAAGTATGTTTTAGTTATAGTTTGGTTAGCTAGTGG
* *
32662118 TGAGGACTT-TGTGTTTGAGACACAGGACCTTCTGATCCCTAATGGAAAATATTTGTACGTGATT
636 TGAGGA-TTGTGTGTTTGACACACAGGACCTTCTGATCCCTAATGGAAAATATTTGTACGGGATT
**
32662182 CCTAAGTTCTTGTGTGATTGAATTTGATTATTGA-TTAATTGAAAGGTTGTAAATGAATGTGTAA
700 CCTAAGTTCTTGCATGATTGAATTTGATTATT-ATTTAATTGAAAGGTTGTAAATGAATGTGTAA
* *
32662246 AATTAAATGGAGTTAGTATTTTGAGCTAAAAGTTATAATTATATAAATTGTGATTGATTTGTATG
764 AATTAAATGGAGTTAGTATTCTGAGCTAAAAGTTATAATTATATAAACTGTGATTGATTTGTATG
*
32662311 TATAGAAAAAGACTCGAAAAGTTCTGTAAAC
829 TATA-AAAAA-ACTCAAAAAGTTCTGTAAAC
32662342 TTGAGATCTT
Statistics
Matches: 793, Mismatches: 61, Indels: 22
0.91 0.07 0.03
Matches are distributed among these distances:
916 150 0.19
923 1 0.00
924 322 0.41
925 1 0.00
926 1 0.00
930 291 0.37
931 8 0.01
932 19 0.02
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.36
Consensus pattern (913 bp):
AGAATTTAAATAAGAGTCTTATATTGAATGATGATTGATAAACATGAGGACTTCTGTGAATAAAT
GAATTCTGAATACTTGTTTCGGTAGAACCCCTACATGTATCGGTAGAAGTAGAGGGTAGGAGAGA
GGTTATTCACTAACCTGAGTTGTATCGATAGTTGGTACAAATAGTTTTGCCCATAAGAGTATCGG
TAGTTTATGTACTTGTATCGGTAGAAATCTACACTATTTCATGAACTGTTTACTAACTTGACAAC
TACCGATACCTCTCCAACAGGTATCGGTAGAAGTCTCCTAGAATTGTGGAGATGAAAGTTTTACC
CTTATTGAGTTGATAAAAAAAGTAAGAATAACGAGTTATAAATGTATATATTTTATTAAATCAAG
AATAATGTTGAAATAAGATTGAATAGGTAACGATTTGAGGCATGAATGCATATAAACTCGAAACC
CTAACCAGCGACGATGTTGGGTTTAGGTACTATACAATGGTAGTAAGAATAATTGATTGGGTGGT
ACTGTGATATTATGGTTGATATGGAATATAGATGTCATGATTTGTGATATGAATAATGATTCCTT
CCGCAATGTAATGATAAGTATGTTTTAGTTATAGTTTGGTTAGCTAGTGGTGAGGATTGTGTGTT
TGACACACAGGACCTTCTGATCCCTAATGGAAAATATTTGTACGGGATTCCTAAGTTCTTGCATG
ATTGAATTTGATTATTATTTAATTGAAAGGTTGTAAATGAATGTGTAAAATTAAATGGAGTTAGT
ATTCTGAGCTAAAAGTTATAATTATATAAACTGTGATTGATTTGTATGTATAAAAAAACTCAAAA
AGTTCTGTAAACCCTAAGATCTTGGTCCGAATAGGTATGGTTTTTGGGGGTTACATTTATCTTAT
ATG
Found at i:32680350 original size:18 final size:18
Alignment explanation
Indices: 32680327--32680362 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
32680317 GTGGTAATAA
* *
32680327 TATTTTTAATTTTTAATT
1 TATTTTAAATTGTTAATT
32680345 TATTTTAAATTGTTAATT
1 TATTTTAAATTGTTAATT
32680363 CTTTATACTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (18 bp):
TATTTTAAATTGTTAATT
Done.