Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43711324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 96 of 135
Found at i:32682593 original size:18 final size:18
Alignment explanation
Indices: 32682533--32682594 Score: 88
Period size: 18 Copynumber: 3.4 Consensus size: 18
32682523 TCAAGCTAAA
32682533 GAAGAAGAAGAAGATCCT
1 GAAGAAGAAGAAGATCCT
* *
32682551 GAAAAAGGAGAAGATCCT
1 GAAGAAGAAGAAGATCCT
*
32682569 GAAGAAGAAAAAGATCCT
1 GAAGAAGAAGAAGATCCT
*
32682587 GAGGAAGA
1 GAAGAAGA
32682595 TCATGTGGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.52, C:0.10, G:0.29, T:0.10
Consensus pattern (18 bp):
GAAGAAGAAGAAGATCCT
Found at i:32686448 original size:49 final size:49
Alignment explanation
Indices: 32686376--32686483 Score: 173
Period size: 49 Copynumber: 2.2 Consensus size: 49
32686366 CGATTAAGCC
* *
32686376 ATGATTGTATATGCTAATATAAATG-ACTAAAATGTTATGTGCTAAATTG
1 ATGATTGTATATGCCAATATAAATGTA-TAAAATGTTATATGCTAAATTG
*
32686425 ATGATTGTATATGCCAATATAAATGTATGAAATGTTATATGCTAAATTG
1 ATGATTGTATATGCCAATATAAATGTATAAAATGTTATATGCTAAATTG
32686474 ATGATTGTAT
1 ATGATTGTAT
32686484 GCCATGATTA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
49 54 0.98
50 1 0.02
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.40
Consensus pattern (49 bp):
ATGATTGTATATGCCAATATAAATGTATAAAATGTTATATGCTAAATTG
Found at i:32686477 original size:23 final size:23
Alignment explanation
Indices: 32686405--32686477 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 23
32686395 TAAATGACTA
*
32686405 AAATGTTATGTGCTAAATTGATG
1 AAATGTTATATGCTAAATTGATG
* *
32686428 -ATTG-TATATGCCAATATAAATGTATG
1 AAATGTTATATG-C--TA-AATTG-ATG
32686454 AAATGTTATATGCTAAATTGATG
1 AAATGTTATATGCTAAATTGATG
32686477 A
1 A
32686478 TTGTATGCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
21 5 0.13
22 4 0.11
23 4 0.11
24 6 0.16
25 6 0.16
26 3 0.08
27 4 0.11
28 6 0.16
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.38
Consensus pattern (23 bp):
AAATGTTATATGCTAAATTGATG
Found at i:32687727 original size:16 final size:16
Alignment explanation
Indices: 32687702--32687732 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32687692 TAATAATAGG
32687702 ATAAGATTGAGGTGTT
1 ATAAGATTGAGGTGTT
*
32687718 ATAAGGTTGAGGTGT
1 ATAAGATTGAGGTGT
32687733 GTCTTGGGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
ATAAGATTGAGGTGTT
Found at i:32691372 original size:293 final size:293
Alignment explanation
Indices: 32690845--32691428 Score: 947
Period size: 293 Copynumber: 2.0 Consensus size: 293
32690835 TCTAGTCACG
32690845 CCTTTCATCATCTCACTCATGAGTATTTATAAGAGAGAGGCAAGCCCGTACTTCCTTGGATAGCT
1 CCTTTCATCATCTCACTCATGAGTATTTATAAGAGAGAGGCAAGCCCGTACTTCCTTGGATAGCT
* * * *
32690910 CAGCGTCTGTATAGCTTCTAGAAGAGCTCTGGTAGATTCATACATTCAGCATGTGTTCTAGTGCA
66 CAGCGTCCGTATAGCTTCTAGAAGAGCTCTAGCAGATTCACACATTCAGCATGTGTTCTAGTGCA
* *
32690975 TTCTCCAAGCTCATCCTTGTCTAGCTGTCCTCTTCTAGAAGCTGCTGAGTTATTCTCCATTCCAT
131 TTCTCCAAGCTCATCCTTGTCTAGCTGTCCTCTTCTAGAAGCTACTGAGTCATTCTCCATTCCAT
* * * **
32691040 CGCTGTGGAAAATAGCACTCTTAGGATTTCGATGACATAAAAATTATGCCATGACATAGTCGTAT
196 CGCTGTGGAAAACAGCACTCTTAGGATTTCCATGACATAAAAATTATGCCACGACATAGTCCAAT
32691105 ATCCTAATTCCCTTTCCTGTTCCTTCATATGCA
261 ATCCTAATTCCCTTTCCTGTTCCTTCATATGCA
* * *
32691138 CCTTTCATCGTCTCACTCATGAGTATTTATAAGAGAGAGG-AAGGTCGGTACTTCCTTGGATAGC
1 CCTTTCATCATCTCACTCATGAGTATTTATAAGAGAGAGGCAA-GCCCGTACTTCCTTGGATAGC
* * *
32691202 TCAGCGTCCGTATAGCTTTTAGAAGAGCTCTAGCAGATTCACACATTTAGCGTGTGTTCTAGTGC
65 TCAGCGTCCGTATAGCTTCTAGAAGAGCTCTAGCAGATTCACACATTCAGCATGTGTTCTAGTGC
* *
32691267 ATTCTCCAAGCTCATCCTTGTCTAGTTGTCCTCTTTTAGAAGCTACTGAGTCATTCTCCATTCCA
130 ATTCTCCAAGCTCATCCTTGTCTAGCTGTCCTCTTCTAGAAGCTACTGAGTCATTCTCCATTCCA
32691332 -CTGCTGTGGAAAACAGCACTCTTAGGATTTCCATGACATAAAAATTATGCCACGACATAGTCCA
195 TC-GCTGTGGAAAACAGCACTCTTAGGATTTCCATGACATAAAAATTATGCCACGACATAGTCCA
* *
32691396 ATATCCTGATTCCCTTTCCTTTTCCTTCATATG
259 ATATCCTAATTCCCTTTCCTGTTCCTTCATATG
32691429 TTCTTTCGTC
Statistics
Matches: 268, Mismatches: 21, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
292 3 0.01
293 265 0.99
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (293 bp):
CCTTTCATCATCTCACTCATGAGTATTTATAAGAGAGAGGCAAGCCCGTACTTCCTTGGATAGCT
CAGCGTCCGTATAGCTTCTAGAAGAGCTCTAGCAGATTCACACATTCAGCATGTGTTCTAGTGCA
TTCTCCAAGCTCATCCTTGTCTAGCTGTCCTCTTCTAGAAGCTACTGAGTCATTCTCCATTCCAT
CGCTGTGGAAAACAGCACTCTTAGGATTTCCATGACATAAAAATTATGCCACGACATAGTCCAAT
ATCCTAATTCCCTTTCCTGTTCCTTCATATGCA
Found at i:32722725 original size:16 final size:16
Alignment explanation
Indices: 32722704--32722744 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
32722694 ACTTAGTATA
32722704 ATTTGCATTAGGGATC
1 ATTTGCATTAGGGATC
32722720 ATTTGCATTAGGGATC
1 ATTTGCATTAGGGATC
32722736 ATTTGCATT
1 ATTTGCATT
32722745 TAGTTTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.41
Consensus pattern (16 bp):
ATTTGCATTAGGGATC
Found at i:32728743 original size:38 final size:39
Alignment explanation
Indices: 32728687--32728763 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
32728677 TTGCAAAATA
* *
32728687 ACATCCAAATTTGCGCCC-AAAACTATCACCGCATGAGC
1 ACATCCAAAGTTGCGCCCAAAAACTATAACCGCATGAGC
* *
32728725 ACATCCAAAGTTGTGCCCAAAAACTATAATCGCATGAGC
1 ACATCCAAAGTTGCGCCCAAAAACTATAACCGCATGAGC
32728764 GTTTCTAGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
38 16 0.47
39 18 0.53
ACGTcount: A:0.36, C:0.30, G:0.14, T:0.19
Consensus pattern (39 bp):
ACATCCAAAGTTGCGCCCAAAAACTATAACCGCATGAGC
Found at i:32732227 original size:17 final size:17
Alignment explanation
Indices: 32732183--32732248 Score: 78
Period size: 17 Copynumber: 3.9 Consensus size: 17
32732173 GCTGTAGTTA
* *
32732183 ATTGTCCCTCCATTTTT
1 ATTGTCACTGCATTTTT
32732200 ATTGTCACTGCATTTTT
1 ATTGTCACTGCATTTTT
* ***
32732217 ATTGTCGCTGCATCAAT
1 ATTGTCACTGCATTTTT
32732234 ATTGTCACTGCATTT
1 ATTGTCACTGCATTT
32732249 CCATATATAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.18, C:0.23, G:0.12, T:0.47
Consensus pattern (17 bp):
ATTGTCACTGCATTTTT
Found at i:32733496 original size:38 final size:37
Alignment explanation
Indices: 32733453--32733550 Score: 117
Period size: 38 Copynumber: 2.6 Consensus size: 37
32733443 ATTTTCGGAA
32733453 TGCATCCAAGACTGTCGCTGCATAAATATTCTTCAAAT
1 TGCATCCAAGACTGTCGCTGCATAAATATTCTTC-AAT
* *
32733491 TGCATCC-AGAACTATCGCTGCATAATTATTCTTCAAT
1 TGCATCCAAG-ACTGTCGCTGCATAAATATTCTTCAAT
* * * *
32733528 TGTACCCAGGAATGTCGCTGCAT
1 TGCATCCAAGACTGTCGCTGCAT
32733551 GAATGTGTCT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
37 21 0.41
38 30 0.59
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (37 bp):
TGCATCCAAGACTGTCGCTGCATAAATATTCTTCAAT
Found at i:32735674 original size:11 final size:11
Alignment explanation
Indices: 32735636--32735674 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
32735626 TTGAGAGCAT
32735636 AAAAATAAAAG
1 AAAAATAAAAG
* *
32735647 ATAAATAAAAT
1 AAAAATAAAAG
32735658 AGAAAATAAAAG
1 A-AAAATAAAAG
32735670 AAAAA
1 AAAAA
32735675 GTTTGAGATG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.79, C:0.00, G:0.08, T:0.13
Consensus pattern (11 bp):
AAAAATAAAAG
Found at i:32738127 original size:12 final size:13
Alignment explanation
Indices: 32738101--32738133 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
32738091 TATATGCATG
32738101 AAAACTAAAACTA
1 AAAACTAAAACTA
32738114 AAAACTAAAA-TA
1 AAAACTAAAACTA
32738126 AAAACTAA
1 AAAACTAA
32738134 CTCAATTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAACTAAAACTA
Found at i:32741557 original size:13 final size:13
Alignment explanation
Indices: 32741541--32741565 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32741531 ACAAATAAAA
32741541 TTACTTAAATAAT
1 TTACTTAAATAAT
32741554 TTACTTAAATAA
1 TTACTTAAATAA
32741566 AATTTGTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTACTTAAATAAT
Found at i:32748335 original size:15 final size:16
Alignment explanation
Indices: 32748315--32748344 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32748305 TTTAATTTTT
32748315 TTATTT-ACTTTTCAG
1 TTATTTCACTTTTCAG
32748330 TTATTTCACTTTTCA
1 TTATTTCACTTTTCA
32748345 TCGTGTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.20, C:0.17, G:0.03, T:0.60
Consensus pattern (16 bp):
TTATTTCACTTTTCAG
Found at i:32762353 original size:21 final size:20
Alignment explanation
Indices: 32762329--32762370 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
32762319 GCAATATTTC
32762329 TTCT-TTTTTCGTTTTCTCTTT
1 TTCTCTTTTTC-TTTTCT-TTT
32762350 TTCTCTTTTTCTTTTCTTTT
1 TTCTCTTTTTCTTTTCTTTT
32762370 T
1 T
32762371 CTCATTCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 10 0.50
22 6 0.30
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (20 bp):
TTCTCTTTTTCTTTTCTTTT
Found at i:32763139 original size:21 final size:21
Alignment explanation
Indices: 32763115--32763162 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
32763105 CTCTCCTTCC
* * *
32763115 TCCTTCTGCTTCTTCTTTTTG
1 TCCTTCTGCTTCCTCTTCTTA
*
32763136 TCCTTATGCTTCCTCTTCTTA
1 TCCTTCTGCTTCCTCTTCTTA
32763157 TCCTTC
1 TCCTTC
32763163 GAACTAACCG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.04, C:0.33, G:0.06, T:0.56
Consensus pattern (21 bp):
TCCTTCTGCTTCCTCTTCTTA
Found at i:32779811 original size:37 final size:37
Alignment explanation
Indices: 32779761--32779868 Score: 99
Period size: 37 Copynumber: 2.9 Consensus size: 37
32779751 TTAATACTAA
* * *
32779761 TGTCGTTGCATGAGCAATTCTAGATTTCACCCAAATT
1 TGTCGTCGCATGAGCAATTCCAGATTGCACCCAAATT
* * **
32779798 TGTCGTCGCATGAGCACTTCCGGATTGCACCCAAAAC
1 TGTCGTCGCATGAGCAATTCCAGATTGCACCCAAATT
* * ** * *
32779835 TGTCGCCACATGAATATTTCCAGAATGCACCCAA
1 TGTCGTCGCATGAGCAATTCCAGATTGCACCCAA
32779869 GACTGTCACT
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (37 bp):
TGTCGTCGCATGAGCAATTCCAGATTGCACCCAAATT
Found at i:32779966 original size:16 final size:15
Alignment explanation
Indices: 32779944--32779979 Score: 63
Period size: 16 Copynumber: 2.3 Consensus size: 15
32779934 TGTACCCAAG
32779944 AATGTCTCTACATGA
1 AATGTCTCTACATGA
32779959 ACATGTCTCTACATGA
1 A-ATGTCTCTACATGA
32779975 AATGT
1 AATGT
32779980 GCAAGCTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (15 bp):
AATGTCTCTACATGA
Found at i:32785147 original size:37 final size:37
Alignment explanation
Indices: 32785104--32785183 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 37
32785094 TAATGTCGTT
*
32785104 GCATGAGCACTTCTAGATTGCG-TTAAAAACTGTCGCC
1 GCATGAGCACTTCTAGATTG-GATCAAAAACTGTCGCC
*
32785141 GCATGAGCACTTCTAGATTGGATCGAAAACTGTCGCC
1 GCATGAGCACTTCTAGATTGGATCAAAAACTGTCGCC
32785178 GCATGA
1 GCATGA
32785184 ATATTTCCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
36 1 0.03
37 39 0.98
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (37 bp):
GCATGAGCACTTCTAGATTGGATCAAAAACTGTCGCC
Found at i:32790332 original size:11 final size:11
Alignment explanation
Indices: 32790316--32790356 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
32790306 AACCCAAACT
32790316 GTTGACCGACC
1 GTTGACCGACC
*
32790327 GTTGACCGACT
1 GTTGACCGACC
*
32790338 ATTGACCGACC
1 GTTGACCGACC
32790349 GTTGACCG
1 GTTGACCG
32790357 TTGATCGTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.22
Consensus pattern (11 bp):
GTTGACCGACC
Found at i:32790357 original size:7 final size:7
Alignment explanation
Indices: 32790345--32790375 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
32790335 ACTATTGACC
32790345 GACCGTT
1 GACCGTT
32790352 GACCGTT
1 GACCGTT
*
32790359 GATCGTT
1 GACCGTT
32790366 GACCGTT
1 GACCGTT
32790373 GAC
1 GAC
32790376 TTTTCCCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.16, C:0.26, G:0.29, T:0.29
Consensus pattern (7 bp):
GACCGTT
Found at i:32797654 original size:14 final size:14
Alignment explanation
Indices: 32797637--32797676 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
32797627 TGCGTTGCTC
*
32797637 GTTGATTGTTGATA
1 GTTGACTGTTGATA
*
32797651 GTTGACTGTTGATC
1 GTTGACTGTTGATA
32797665 GTTGACTGTTGA
1 GTTGACTGTTGA
32797677 CTTGACTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.17, C:0.07, G:0.30, T:0.45
Consensus pattern (14 bp):
GTTGACTGTTGATA
Found at i:32797654 original size:21 final size:21
Alignment explanation
Indices: 32797637--32797678 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32797627 TGCGTTGCTC
*
32797637 GTTGATTGTTGATAGTTGACT
1 GTTGATCGTTGATAGTTGACT
32797658 GTTGATCGTTGACT-GTTGACT
1 GTTGATCGTTGA-TAGTTGACT
32797679 TGACTTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.17, C:0.10, G:0.29, T:0.45
Consensus pattern (21 bp):
GTTGATCGTTGATAGTTGACT
Found at i:32806865 original size:21 final size:23
Alignment explanation
Indices: 32806841--32806883 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
32806831 ACATTATTAT
32806841 TCTATTTTT-TTTCTTT-TTTTA
1 TCTATTTTTCTTTCTTTCTTTTA
32806862 TCTATTTTTCTTTCTTTCTTTT
1 TCTATTTTTCTTTCTTTCTTTT
32806884 CTTTTATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
22 7 0.35
23 4 0.20
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (23 bp):
TCTATTTTTCTTTCTTTCTTTTA
Found at i:32807042 original size:29 final size:29
Alignment explanation
Indices: 32807009--32807070 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
32806999 GTGACAACCT
32807009 TTGGCTAGATATTTTTTCTAACAATTTTA
1 TTGGCTAGATATTTTTTCTAACAATTTTA
32807038 TTGGCTAGATATTTTTTCTAACAATTTTA
1 TTGGCTAGATATTTTTTCTAACAATTTTA
32807067 TTGG
1 TTGG
32807071 AGTGTTCCCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.26, C:0.10, G:0.13, T:0.52
Consensus pattern (29 bp):
TTGGCTAGATATTTTTTCTAACAATTTTA
Found at i:32816124 original size:28 final size:28
Alignment explanation
Indices: 32816084--32816165 Score: 155
Period size: 28 Copynumber: 2.9 Consensus size: 28
32816074 GATATCCGAT
*
32816084 TTACTTCCTGTTGACCCAAAGGTCATGC
1 TTACTCCCTGTTGACCCAAAGGTCATGC
32816112 TTACTCCCTGTTGACCCAAAGGTCATGC
1 TTACTCCCTGTTGACCCAAAGGTCATGC
32816140 TTACTCCCTGTTGACCCAAAGGTCAT
1 TTACTCCCTGTTGACCCAAAGGTCAT
32816166 TATGCTCATT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.30
Consensus pattern (28 bp):
TTACTCCCTGTTGACCCAAAGGTCATGC
Found at i:32816189 original size:36 final size:36
Alignment explanation
Indices: 32816140--32816274 Score: 225
Period size: 36 Copynumber: 3.8 Consensus size: 36
32816130 AAGGTCATGC
*
32816140 TTACTCCCTGTTGACCCAAAGGTCATTATGCTCATT
1 TTACTCCCTGTTGACCCAAAGGTCATGATGCTCATT
* *
32816176 TCACTCCCTGTTGACCCAAAGGTTATGATGCTCATT
1 TTACTCCCTGTTGACCCAAAGGTCATGATGCTCATT
* *
32816212 TTACTCTCTGTAGACCCAAAGGTCATGATGCTCATT
1 TTACTCCCTGTTGACCCAAAGGTCATGATGCTCATT
32816248 TTACTCCCTGTTGACCCAAAGGTCATG
1 TTACTCCCTGTTGACCCAAAGGTCATG
32816275 CCTGTTACCA
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 90 1.00
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.33
Consensus pattern (36 bp):
TTACTCCCTGTTGACCCAAAGGTCATGATGCTCATT
Found at i:32823503 original size:17 final size:17
Alignment explanation
Indices: 32823481--32823513 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32823471 TTTGATGGCA
32823481 TAAAATA-AAAGGTAAAC
1 TAAAATAGAAA-GTAAAC
32823498 TAAAATAGAAAGTAAA
1 TAAAATAGAAAGTAAA
32823514 AGCAAAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.67, C:0.03, G:0.12, T:0.18
Consensus pattern (17 bp):
TAAAATAGAAAGTAAAC
Found at i:32831468 original size:25 final size:25
Alignment explanation
Indices: 32831426--32831536 Score: 96
Period size: 25 Copynumber: 4.4 Consensus size: 25
32831416 ATATTTCTCA
* * * * *
32831426 TACGAGCCAAACAAAATTACGCTTT
1 TACGAGCCAGATAGAATTACACTCT
* *
32831451 TACAAGCCAGATAGAATTTCACTCT
1 TACGAGCCAGATAGAATTACACTCT
* *
32831476 TACGAGCCAAATAGAATTTCACTCT
1 TACGAGCCAGATAGAATTACACTCT
* * * *
32831501 TACGAGCTAGACAGAATTACGCTTT
1 TACGAGCCAGATAGAATTACACTCT
*
32831526 TACGAGTCAGA
1 TACGAGCCAGA
32831537 ATCAAAATTA
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 69 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (25 bp):
TACGAGCCAGATAGAATTACACTCT
Found at i:32831517 original size:50 final size:49
Alignment explanation
Indices: 32831407--32831518 Score: 116
Period size: 50 Copynumber: 2.2 Consensus size: 49
32831397 TCAAATGAGC
* * *
32831407 CTAGACAGAATATTTCTCATACGAGCCAAACAAAATTACGCTTTTACAAG
1 CTAGACAGAAT-TTACTCATACGAGCCAAACAAAATTACACTCTTACAAG
* * * * * * *
32831457 CCAGATAGAATTTCACTCTTACGAGCCAAATAGAATTTCACTCTTACGAG
1 CTAGACAGAATTT-ACTCATACGAGCCAAACAAAATTACACTCTTACAAG
32831507 CTAGACAGAATT
1 CTAGACAGAATT
32831519 ACGCTTTTAC
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
49 2 0.04
50 47 0.96
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.27
Consensus pattern (49 bp):
CTAGACAGAATTTACTCATACGAGCCAAACAAAATTACACTCTTACAAG
Found at i:32841175 original size:12 final size:12
Alignment explanation
Indices: 32841155--32841187 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
32841145 AGGATGAAAA
32841155 AAAGAAGAAG-G
1 AAAGAAGAAGAG
32841166 AAAGGAAGAAGAG
1 AAA-GAAGAAGAG
32841179 AAAGAAGAA
1 AAAGAAGAA
32841188 ACAAAACCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 3 0.15
12 13 0.65
13 4 0.20
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (12 bp):
AAAGAAGAAGAG
Found at i:32848786 original size:21 final size:21
Alignment explanation
Indices: 32848760--32848817 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
32848750 TGGTGCAAAC
32848760 TTCTACCGATACAAGTGAC-A
1 TTCTACCGATACAAGTGACTA
*
32848780 GTTCTACCGATACAGGTGACTA
1 -TTCTACCGATACAAGTGACTA
*
32848802 TTCTACCGAAACAAGT
1 TTCTACCGATACAAGT
32848818 CTTACTTCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (21 bp):
TTCTACCGATACAAGTGACTA
Found at i:32849536 original size:25 final size:25
Alignment explanation
Indices: 32849508--32849588 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
32849498 CAAGTCTTCT
* *
32849508 AGAATTTGACTCAAATGAGCCAGAC
1 AGAATTTGACTCATACGAGCCAGAC
* * *
32849533 AGAATATCG-CTCATACAAGCCAGAT
1 AGAAT-TTGACTCATACGAGCCAGAC
* *
32849558 AGAATTTCACTCTTACGAGCCAGAC
1 AGAATTTGACTCATACGAGCCAGAC
32849583 AGAATT
1 AGAATT
32849589 ACACTCTTAC
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
24 1 0.02
25 41 0.93
26 2 0.05
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (25 bp):
AGAATTTGACTCATACGAGCCAGAC
Found at i:32849593 original size:25 final size:25
Alignment explanation
Indices: 32849524--32849601 Score: 95
Period size: 25 Copynumber: 3.1 Consensus size: 25
32849514 TGACTCAAAT
* *
32849524 GAGCCAGACAGAA-TATCGCTCATAC
1 GAGCCAGACAGAATTA-CACTCTTAC
* * *
32849549 AAGCCAGATAGAATTTCACTCTTAC
1 GAGCCAGACAGAATTACACTCTTAC
32849574 GAGCCAGACAGAATTACACTCTTAC
1 GAGCCAGACAGAATTACACTCTTAC
32849599 GAG
1 GAG
32849602 ATCTCATCCA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
25 43 0.98
26 1 0.02
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.21
Consensus pattern (25 bp):
GAGCCAGACAGAATTACACTCTTAC
Found at i:32855251 original size:21 final size:21
Alignment explanation
Indices: 32855201--32855252 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
32855191 GGAGTTTATA
32855201 GTATTGGTAGAAGCATGACAT
1 GTATTGGTAGAAGCATGACAT
* *
32855222 GT-TTCGGTAGAGGTCAT-ACTT
1 GTATT-GGTAGAAG-CATGACAT
32855243 GTATTGGTAG
1 GTATTGGTAG
32855253 TATTATCTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 2 0.08
21 19 0.73
22 5 0.19
ACGTcount: A:0.25, C:0.10, G:0.31, T:0.35
Consensus pattern (21 bp):
GTATTGGTAGAAGCATGACAT
Found at i:32865824 original size:25 final size:25
Alignment explanation
Indices: 32865783--32865908 Score: 100
Period size: 25 Copynumber: 5.0 Consensus size: 25
32865773 TAAAATGAGC
* *
32865783 CTAGACAGAA-TATTGCTCATACGAG
1 CTAGACAAAATTA-TGCTCTTACGAG
32865808 CTAGACAAAATTATGCTCTT-CTGAG
1 CTAGACAAAATTATGCTCTTAC-GAG
* *
32865833 CCAG-CTAAAATT-TCGCTCTTATGAG
1 CTAGAC-AAAATTAT-GCTCTTACGAG
*
32865858 CTAGACAAAATT-TCGGTCTTACGAG
1 CTAGACAAAATTAT-GCTCTTACGAG
* * *
32865883 CCAGACAGAATTACGCTCTTACGAG
1 CTAGACAAAATTATGCTCTTACGAG
32865908 C
1 C
32865909 AAAATAGAAT
Statistics
Matches: 83, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
24 3 0.04
25 77 0.93
26 3 0.04
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (25 bp):
CTAGACAAAATTATGCTCTTACGAG
Found at i:32865884 original size:50 final size:50
Alignment explanation
Indices: 32865797--32865908 Score: 131
Period size: 50 Copynumber: 2.2 Consensus size: 50
32865787 ACAGAATATT
* *
32865797 GCTCATACGAGCTAGACAAAATTATGCTCTTCTGAGCCAG-CTAAAATTTC
1 GCTCTTACGAGCTAGACAAAATTATGCTCTTCTGAGCCAGAC-AAAATTAC
* * *
32865847 GCTCTTATGAGCTAGACAAAATT-TCGGTCTTAC-GAGCCAGACAGAATTAC
1 GCTCTTACGAGCTAGACAAAATTAT-GCTCTT-CTGAGCCAGACAAAATTAC
32865897 GCTCTTACGAGC
1 GCTCTTACGAGC
32865909 AAAATAGAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
49 1 0.02
50 50 0.94
51 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (50 bp):
GCTCTTACGAGCTAGACAAAATTATGCTCTTCTGAGCCAGACAAAATTAC
Found at i:32865917 original size:25 final size:25
Alignment explanation
Indices: 32865874--32865930 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
32865864 AAAATTTCGG
* * *
32865874 TCTTACGAGCCAGACAGAATTACGC
1 TCTTACGAGCAAAACAGAATTAAGC
* *
32865899 TCTTACGAGCAAAATAGAATTAATC
1 TCTTACGAGCAAAACAGAATTAAGC
32865924 TCTTACG
1 TCTTACG
32865931 GGCTAGAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (25 bp):
TCTTACGAGCAAAACAGAATTAAGC
Found at i:32874289 original size:26 final size:26
Alignment explanation
Indices: 32874260--32874316 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
32874250 TCATATCAAT
*
32874260 AATTTTGAACAAGTTCTTGCAGCGAC
1 AATTCTGAACAAGTTCTTGCAGCGAC
* * *
32874286 AATTCTGAGCAAGTTCTTGTAGTGAC
1 AATTCTGAACAAGTTCTTGCAGCGAC
32874312 AATTC
1 AATTC
32874317 CGGGTGCAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (26 bp):
AATTCTGAACAAGTTCTTGCAGCGAC
Found at i:32874424 original size:21 final size:21
Alignment explanation
Indices: 32874400--32874456 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
32874390 TGAGTTCCAT
32874400 TAAGTTAGAAAATGCACTAAC
1 TAAGTTAGAAAATGCACTAAC
32874421 TAAGTTAGAAAATGCACTAAC
1 TAAGTTAGAAAATGCACTAAC
* *
32874442 TAAATTAAAAAATGC
1 TAAGTTAGAAAATGC
32874457 TAAAGATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.25
Consensus pattern (21 bp):
TAAGTTAGAAAATGCACTAAC
Found at i:32874471 original size:13 final size:13
Alignment explanation
Indices: 32874453--32874477 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32874443 AAATTAAAAA
32874453 ATGCTAAAGATGT
1 ATGCTAAAGATGT
32874466 ATGCTAAAGATG
1 ATGCTAAAGATG
32874478 ATAAATGGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (13 bp):
ATGCTAAAGATGT
Found at i:32875388 original size:17 final size:17
Alignment explanation
Indices: 32875353--32875399 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
32875343 GACACTAAAT
*
32875353 TACAATGACAAATGGAAA
1 TACAATGAC-AATGCAAA
*
32875371 TGCAATGACAATGCAAA
1 TACAATGACAATGCAAA
*
32875388 TATAATGACAAT
1 TACAATGACAAT
32875400 TAGATGTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.51, C:0.13, G:0.15, T:0.21
Consensus pattern (17 bp):
TACAATGACAATGCAAA
Found at i:32883577 original size:43 final size:43
Alignment explanation
Indices: 32883515--32883596 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
32883505 ATATAAGGAG
*
32883515 AAAAGATTTGAGATGCTCCCTCGCATCTTCGTGAGGTAAGCAA
1 AAAAGATTTGAGATACTCCCTCGCATCTTCGTGAGGTAAGCAA
32883558 AAAAGATTTGAGATACTCCCTCGCATCTTCGTGAGGTAA
1 AAAAGATTTGAGATACTCCCTCGCATCTTCGTGAGGTAA
32883597 ATCAGCATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
AAAAGATTTGAGATACTCCCTCGCATCTTCGTGAGGTAAGCAA
Found at i:32891623 original size:26 final size:26
Alignment explanation
Indices: 32891594--32891646 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32891584 GCGATATTTT
* *
32891594 TGAACAAGTTCCTATAGCGACAATTC
1 TGAACAAGTTCCTACAACGACAATTC
* *
32891620 TGAATAAGTTCTTACAACGACAATTC
1 TGAACAAGTTCCTACAACGACAATTC
32891646 T
1 T
32891647 AGGCACAATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (26 bp):
TGAACAAGTTCCTACAACGACAATTC
Found at i:32895467 original size:18 final size:19
Alignment explanation
Indices: 32895446--32895482 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
32895436 ACTTTTAATC
*
32895446 ATTTTGAGACTT-TAATTT
1 ATTTTAAGACTTGTAATTT
32895464 ATTTTAAGACTTGTAATTT
1 ATTTTAAGACTTGTAATTT
32895483 TTGAGATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.54
Consensus pattern (19 bp):
ATTTTAAGACTTGTAATTT
Found at i:32904257 original size:19 final size:19
Alignment explanation
Indices: 32904235--32904279 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
32904225 TTTTATTAGG
32904235 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATAT
* *
32904254 ATTTATTATTTAAATTTAT
1 ATTTAATATTTAAATATAT
32904273 ATTTAAT
1 ATTTAAT
32904280 TAATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATAT
Found at i:32904275 original size:31 final size:30
Alignment explanation
Indices: 32904207--32904278 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 30
32904197 TTGATTTTAT
*
32904207 TTTAT-TTTAAAATATTATTTTTATTAGGA
1 TTTATATTTAAAATATTATTTTTATTAGAA
*
32904236 TTTAATATTTAAGATATTATTTATTATTTA-AA
1 TTT-ATATTTAAAATATTATTT-TTA-TTAGAA
32904268 TTTATATTTAA
1 TTTATATTTAA
32904279 TTAATGTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
29 3 0.08
30 2 0.05
31 22 0.59
32 7 0.19
33 3 0.08
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (30 bp):
TTTATATTTAAAATATTATTTTTATTAGAA
Found at i:32906667 original size:21 final size:21
Alignment explanation
Indices: 32906643--32906682 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32906633 ACAATTTATA
*
32906643 GATTTTCAAAAGCAAACTGTG
1 GATTTTCAAAAGAAAACTGTG
*
32906664 GATTTTTAAAAGAAAACTG
1 GATTTTCAAAAGAAAACTG
32906683 AGGCATCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.30
Consensus pattern (21 bp):
GATTTTCAAAAGAAAACTGTG
Found at i:32907860 original size:6 final size:6
Alignment explanation
Indices: 32907849--32907886 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
32907839 GGCAACCCAA
*
32907849 TTATTT TTATTT TTATTT TTA-AT TTATTT TTAATTT TT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TT-ATTT TT
32907887 CTCTATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
5 4 0.14
6 18 0.64
7 6 0.21
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
TTATTT
Found at i:32907876 original size:17 final size:16
Alignment explanation
Indices: 32907854--32907918 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 16
32907844 CCCAATTATT
32907854 TTTATTTTTATTTTTAA
1 TTTATTTTTATTTTT-A
*
32907871 TTTATTTTTAATTTTTC
1 TTTATTTTT-ATTTTTA
*
32907888 TCTA-TTTTATTTATTTA
1 TTTATTTTTA-TT-TTTA
32907905 TTTATTTATTATTT
1 TTTATTT-TTATTT
32907919 GTCCAAGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
15 1 0.03
16 6 0.15
17 19 0.49
18 10 0.26
19 3 0.08
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTATTTTTATTTTTA
Found at i:32908846 original size:102 final size:102
Alignment explanation
Indices: 32908685--32908870 Score: 261
Period size: 102 Copynumber: 1.8 Consensus size: 102
32908675 TTAAATTGAT
* *
32908685 TAACCGGGATGGAGTGCTTGGTGGTCATTTCATTTCTCGTCAAAAGGGCTAACACATTC-TACAA
1 TAACCGGGATGGAGTGCTTGGTGGTCATTTCATTTCGCGTCAAAAGGGCCAACACATTCTTA-AA
*
32908749 -AAAGAAGAAGAAAAAAATTGGGAGCATGTTGGGCTGAG
65 GAAA-AAAAAGAAAAAAATTGGGAGCATGTTGGGCTGAG
* ***
32908787 TAACCGGGATGGAGTGCTTGAGT-GTCATTTCATTTCGCGTCAAAAGGTCCAATGTATTCTTAAA
1 TAACCGGGATGGAGTGCTTG-GTGGTCATTTCATTTCGCGTCAAAAGGGCCAACACATTCTTAAA
32908851 GAAAAAAAAGAAAAAAATTG
65 GAAAAAAAAGAAAAAAATTG
32908871 ACAAAATAAA
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
102 67 0.91
103 7 0.09
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (102 bp):
TAACCGGGATGGAGTGCTTGGTGGTCATTTCATTTCGCGTCAAAAGGGCCAACACATTCTTAAAG
AAAAAAAAGAAAAAAATTGGGAGCATGTTGGGCTGAG
Found at i:32909400 original size:5 final size:5
Alignment explanation
Indices: 32909390--32909415 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
32909380 AAAAGACTTG
32909390 ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT A
32909416 AAATATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:32909453 original size:31 final size:31
Alignment explanation
Indices: 32909398--32909478 Score: 96
Period size: 31 Copynumber: 2.6 Consensus size: 31
32909388 TGATTTTATT
* *
32909398 TTATTTTATTTTAT-TTTAAAATATTATTT-
1 TTATTTAAATTTATATTTAAAATATTATTTA
*
32909427 TTA-TTAAGATTTAATATTTAAGATATTATTTA
1 TTATTTAA-ATTT-ATATTTAAAATATTATTTA
32909459 TTATTTAAATTTATATTTAA
1 TTATTTAAATTTATATTTAA
32909479 TTAATCTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
28 3 0.07
29 6 0.14
30 2 0.05
31 22 0.50
32 7 0.16
33 4 0.09
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (31 bp):
TTATTTAAATTTATATTTAAAATATTATTTA
Found at i:32909457 original size:19 final size:19
Alignment explanation
Indices: 32909435--32909479 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
32909425 TTTTATTAAG
32909435 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATAT
* *
32909454 ATTTATTATTTAAATTTAT
1 ATTTAATATTTAAATATAT
32909473 ATTTAAT
1 ATTTAAT
32909480 TAATCTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATAT
Found at i:32910303 original size:22 final size:21
Alignment explanation
Indices: 32910275--32910322 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
32910265 TATTTTCTAT
32910275 TTTTTAATTCAAT-TTTCTTTTA
1 TTTTTAATT--ATGTTTCTTTTA
*
32910297 TTTTTAATTTTGTTTCTTTTA
1 TTTTTAATTATGTTTCTTTTA
32910318 TTTTT
1 TTTTT
32910323 CCTCAGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 14 0.58
22 9 0.38
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (21 bp):
TTTTTAATTATGTTTCTTTTA
Found at i:32912122 original size:14 final size:15
Alignment explanation
Indices: 32912095--32912125 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
32912085 GAAGAAGAAA
32912095 AAGAAGACGAAAGAG
1 AAGAAGACGAAAGAG
32912110 AAGAAGA-GAAAGAG
1 AAGAAGACGAAAGAG
32912124 AA
1 AA
32912126 AGTTCCTGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.65, C:0.03, G:0.32, T:0.00
Consensus pattern (15 bp):
AAGAAGACGAAAGAG
Found at i:32921070 original size:18 final size:18
Alignment explanation
Indices: 32921047--32921085 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
32921037 GTAAAAGCAC
*
32921047 CCTTATTTTCCAGGACAT
1 CCTTATTTTCCAAGACAT
32921065 CCTTATTTTCCAAGACAT
1 CCTTATTTTCCAAGACAT
32921083 CCT
1 CCT
32921086 CATTCTCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (18 bp):
CCTTATTTTCCAAGACAT
Found at i:32927396 original size:19 final size:19
Alignment explanation
Indices: 32927361--32927398 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32927351 AATTTTAGCC
*
32927361 TAGTCGAAAAAGAGAAAAT
1 TAGTCGAAAAAAAGAAAAT
32927380 TAGT-GAAAAAAATGAAAAT
1 TAGTCGAAAAAAA-GAAAAT
32927399 GAGTAGGGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.61, C:0.03, G:0.18, T:0.18
Consensus pattern (19 bp):
TAGTCGAAAAAAAGAAAAT
Found at i:32928226 original size:23 final size:23
Alignment explanation
Indices: 32928174--32928227 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
32928164 ATGAATATAA
*
32928174 ATAATTAAATGAAAACAATCAAAT
1 ATAATT-AATGAAAACAATAAAAT
*
32928198 ATAATTAAT-AACACAATAAAGAT
1 ATAATTAATGAAAACAATAAA-AT
32928221 ATAATTA
1 ATAATTA
32928228 TAGTATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 9 0.33
23 12 0.44
24 6 0.22
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (23 bp):
ATAATTAATGAAAACAATAAAAT
Found at i:32928466 original size:18 final size:18
Alignment explanation
Indices: 32928429--32928468 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
32928419 TAAATTAAGG
*
32928429 AAAAAATACAAATAGCAT
1 AAAAAATACAAATAGAAT
32928447 AAAAAATAACAAATA-AAT
1 AAAAAAT-ACAAATAGAAT
32928465 AAAA
1 AAAA
32928469 TACATAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.75, C:0.07, G:0.03, T:0.15
Consensus pattern (18 bp):
AAAAAATACAAATAGAAT
Found at i:32928488 original size:21 final size:23
Alignment explanation
Indices: 32928462--32928504 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
32928452 ATAACAAATA
*
32928462 AATAAAA-TACATAAAA-CAAGG
1 AATAAAATTAAATAAAAGCAAGG
32928483 AATAAAATTAAATAAAAGCAAG
1 AATAAAATTAAATAAAAGCAAG
32928505 AATGTAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 8 0.42
23 4 0.21
ACGTcount: A:0.67, C:0.07, G:0.09, T:0.16
Consensus pattern (23 bp):
AATAAAATTAAATAAAAGCAAGG
Found at i:32928764 original size:15 final size:14
Alignment explanation
Indices: 32928715--32928803 Score: 64
Period size: 15 Copynumber: 6.3 Consensus size: 14
32928705 TAATGCAAAT
32928715 TAAATAA-ATAATAA
1 TAAATAACATAA-AA
*
32928729 TAAA-AGAGATAATAA
1 TAAATA-ACATAA-AA
32928744 TAAAATAACATGAAAA
1 T-AAATAACAT-AAAA
32928760 TAAATAACA-ACAAGA
1 TAAATAACATA-AA-A
32928775 TAAATAA-ATAAAA
1 TAAATAACATAAAA
32928788 TAAATAA-AT-AAA
1 TAAATAACATAAAA
32928800 TAAA
1 TAAA
32928804 AATTAAATGC
Statistics
Matches: 66, Mismatches: 1, Indels: 18
0.78 0.01 0.21
Matches are distributed among these distances:
12 7 0.11
13 12 0.18
14 10 0.15
15 25 0.38
16 9 0.14
17 3 0.05
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.21
Consensus pattern (14 bp):
TAAATAACATAAAA
Found at i:32928764 original size:45 final size:45
Alignment explanation
Indices: 32928669--32928766 Score: 105
Period size: 45 Copynumber: 2.2 Consensus size: 45
32928659 AAATTTAGTG
*
32928669 ATAAATAAATAAATAAACAAACAATATAATAACAATTAATGCAAA
1 ATAAATAAATAAATAAACAAACAATATAATAACAATAAATGCAAA
* *
32928714 TTAAATAAAT-AATAATA-AAAGAGATAATAATAA-AATAACATG-AAA
1 ATAAATAAATAAATAA-ACAAACA-AT-ATAATAACAATAA-ATGCAAA
32928759 ATAAATAA
1 ATAAATAA
32928767 CAACAAGATA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
44 9 0.20
45 26 0.58
46 10 0.22
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.23
Consensus pattern (45 bp):
ATAAATAAATAAATAAACAAACAATATAATAACAATAAATGCAAA
Found at i:32928781 original size:4 final size:4
Alignment explanation
Indices: 32928774--32928803 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
32928764 TAACAACAAG
32928774 ATAA ATAA ATAAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA AT-AA ATAA ATAA ATAA ATAA A
32928804 AATTAAATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
ATAA
Found at i:32928898 original size:16 final size:16
Alignment explanation
Indices: 32928863--32928905 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
32928853 ATTAGGCATG
*
32928863 AAAATAAAT-GACAAA
1 AAAATAAATAAACAAA
*
32928878 TAAATAAATAAACAAA
1 AAAATAAATAAACAAA
*
32928894 AAAATGAATAAA
1 AAAATAAATAAA
32928906 TTAAATGCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (16 bp):
AAAATAAATAAACAAA
Found at i:32929716 original size:45 final size:45
Alignment explanation
Indices: 32929625--32930110 Score: 555
Period size: 45 Copynumber: 10.8 Consensus size: 45
32929615 CCCTTTGGAT
* * *
32929625 TTAGGGATAAAAGATTGGATTTGGTGACTTCAATCTACCCCTCTAGA
1 TTAGGGGTAAAAGATTGGA--TGGTGGCTTCAATCTGCCCCTCTAGA
** ** *
32929672 TTAGGTATAAAAGATTGGATGGTTTCTTCAATCTGCCTCTCTAGA
1 TTAGGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCCTCTAGA
* *
32929717 TTAGGGGTAAAAGATTGGATGGTGGCTTCAATTTGTCCCTCT-GAA
1 TTAGGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCCTCTAG-A
* *
32929762 TTAGGGATAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTAGA
1 TTAGGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCCTCTAGA
** **
32929807 TTAGGGGTAAAAGACCGGATGGTTACTTCAATCTGCCCCTCTAGA
1 TTAGGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCCTCTAGA
* * *
32929852 TTAGGGGTAAAAGACTGGATGGTGGCTTTAATCTGCCCCTCTGGAA
1 TTAGGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCCTCTAG-A
* * * **
32929898 TT-GGGGTAAAAGATTGGATGGTTGCTTCAATCTACCCTTCCGGA
1 TTAGGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCCTCTAGA
* * * ** *
32929942 TTAGGGGTAAAAGATTGGTTGGTAGCTTCAATCTACCTGTCTGGA
1 TTAGGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCCTCTAGA
* * *
32929987 TTAGGGGTAAAAGACTAGATGGTGACTTCAATCTGCCCCTCTAGA
1 TTAGGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCCTCTAGA
* *
32930032 TTA-GGGTAAAAGATTGGATGGTGGCTTCAATTTGCCGCTCTAGA
1 TTAGGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCCTCTAGA
* * * * *
32930076 TTAGAGGTAAAAGACTGAATGATAGCTTCAATCTG
1 TTAGGGGTAAAAGATTGGATGGTGGCTTCAATCTG
32930111 TTCAGGTTTT
Statistics
Matches: 376, Mismatches: 58, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
44 43 0.11
45 311 0.83
46 4 0.01
47 18 0.05
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (45 bp):
TTAGGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCCTCTAGA
Found at i:32929849 original size:135 final size:135
Alignment explanation
Indices: 32929625--32930110 Score: 622
Period size: 135 Copynumber: 3.6 Consensus size: 135
32929615 CCCTTTGGAT
* ** *
32929625 TTAGGGATAAAAGATTGGATTTGGTGACTTCAATCTACCCCTCTAGATTAGGTATAAAAGATTGG
1 TTAGGGATAAAAGATTGGA--TGGTGGCTTCAATCTACCCCTCTAGATTAGGGGTAAAAGACTGG
* * * *
32929690 ATGGTTTCTTCAATCTGCCTCTCTAGATTAGGGGTAAAAGATTGGATGGTGGCTTCAATTTGTCC
64 ATGGTTACTTCAATCTGCCTCTCTAGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTGCCC
32929755 CTCTGAA
129 CTCTGAA
*
32929762 TTAGGGATAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTAGATTAGGGGTAAAAGACCGGAT
1 TTAGGGATAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTAGATTAGGGGTAAAAGACTGGAT
* *
32929827 GGTTACTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGACTGGATGGTGGCTTTAATCTGCCCCT
66 GGTTACTTCAATCTGCCTCTCTAGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTGCCCCT
32929892 CTGGAA
131 CT-GAA
* * * ** * *
32929898 TT-GGGGTAAAAGATTGGATGGTTGCTTCAATCTACCCTTCCGGATTAGGGGTAAAAGATTGGTT
1 TTAGGGATAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTAGATTAGGGGTAAAAGACTGGAT
* * * * *
32929962 GG-TAGCTTCAATCTACCTGTCTGGATTAGGGGTAAAAGACTAGATGGTGACTTCAATCTGCCCC
66 GGTTA-CTTCAATCTGCCTCTCTAGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTGCCCC
32930026 TCT-AGA
130 TCTGA-A
* * * * *
32930032 TTAGGG-TAAAAGATTGGATGGTGGCTTCAATTTGCCGCTCTAGATTAGAGGTAAAAGACTGAAT
1 TTAGGGATAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTAGATTAGGGGTAAAAGACTGGAT
*
32930096 -GATAGCTTCAATCTG
66 GGTTA-CTTCAATCTG
32930111 TTCAGGTTTT
Statistics
Matches: 306, Mismatches: 38, Indels: 13
0.86 0.11 0.04
Matches are distributed among these distances:
133 2 0.01
134 64 0.21
135 216 0.71
136 5 0.02
137 19 0.06
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (135 bp):
TTAGGGATAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTAGATTAGGGGTAAAAGACTGGAT
GGTTACTTCAATCTGCCTCTCTAGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTGCCCCT
CTGAA
Found at i:32930239 original size:49 final size:50
Alignment explanation
Indices: 32930148--32930618 Score: 204
Period size: 49 Copynumber: 9.6 Consensus size: 50
32930138 TCGTTGCGGT
* * ** ** *
32930148 TTCAATCTCTCCCTCTTTGGTTTTAGGGTGTTGGGTT-TGCCATTATGAC
1 TTCAACCTATCCCTCTTTAATTTTAGGGTGTTAAGTTCCGCCATTATGAC
* *
32930197 TTTAACCTATCTCTCTTTAATTTTAGGGTGTT-AGTTCCGCCA-T-TGCAGC
1 TTCAACCTATCCCTCTTTAATTTTAGGGTGTTAAGTTCCGCCATTATG-A-C
* ** *
32930246 TTCAACCTATCCCTCTTCAATTTTAGGGTGTTAAG-TCCGTTATTATGGC
1 TTCAACCTATCCCTCTTTAATTTTAGGGTGTTAAGTTCCGCCATTATGAC
* * * * ** ** *
32930295 TTCAACCTATCCCTATTTAGTTTTAAGGTG-TAAGATCCGCTGTTCCGGC
1 TTCAACCTATCCCTCTTTAATTTTAGGGTGTTAAGTTCCGCCATTATGAC
* * * * *
32930344 TTCAATCTTTCCCTCTTCAATTTTAGGTTG-TAAGATT-CGCCATTGT-AGC
1 TTCAACCTATCCCTCTTTAATTTTAGGGTGTTAAG-TTCCGCCATTATGA-C
** * ** * * * * *
32930393 TTCAATATTTCCCTCTTCGATTTTAGGGTGTTAA-ATCCACTATTGTGGC
1 TTCAACCTATCCCTCTTTAATTTTAGGGTGTTAAGTTCCGCCATTATGAC
* * ** ** *
32930442 TTTAATCTATCCCTCTTCGATTTTAGGGTGTTAA--TCTACC-GT-TGCAGC
1 TTCAACCTATCCCTCTTTAATTTTAGGGTGTTAAGTTCCGCCATTATG-A-C
* * * ** * *
32930490 TTCAACCTATCTCTC-TTCATCTTTAAGGTG-TAAGATT-CATCGTTGTGAC
1 TTCAACCTATCCCTCTTTAAT-TTTAGGGTGTTAAG-TTCCGCCATTATGAC
* * * * * * *
32930539 TTCAATCTTTCCTTTTTTGATTTTAGGGTGTTAAG-TCCACCATTACGAC
1 TTCAACCTATCCCTCTTTAATTTTAGGGTGTTAAGTTCCGCCATTATGAC
* *
32930588 TTCAACCTATCCCTCTTTAGTTTTAAGGTGT
1 TTCAACCTATCCCTCTTTAATTTTAGGGTGT
32930619 AAGATCCATT
Statistics
Matches: 323, Mismatches: 76, Indels: 46
0.73 0.17 0.10
Matches are distributed among these distances:
46 2 0.01
47 9 0.03
48 36 0.11
49 254 0.79
50 18 0.06
51 4 0.01
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.42
Consensus pattern (50 bp):
TTCAACCTATCCCTCTTTAATTTTAGGGTGTTAAGTTCCGCCATTATGAC
Found at i:32930291 original size:98 final size:98
Alignment explanation
Indices: 32930189--32930370 Score: 238
Period size: 98 Copynumber: 1.9 Consensus size: 98
32930179 TGGGTTTGCC
* * * * * * *
32930189 ATTATGACTTTAACCTATCTCTCTTTAATTTTAGGGTGTTAGTTCCGCCATTGCAGCTTCAACCT
1 ATTATGACTTCAACCTATCCCTATTTAATTTTAAGGTGTAAGATCCGCCATTCCAGCTTCAACCT
32930254 ATCCCTCTTCAATTTTAGGGTGTTAAGTCCGTT
66 ATCCCTCTTCAATTTTAGGGTGTTAAGTCCGTT
* * ** * *
32930287 ATTATGGCTTCAACCTATCCCTATTTAGTTTTAAGGTGTAAGATCCGCTGTTCCGGCTTCAATCT
1 ATTATGACTTCAACCTATCCCTATTTAATTTTAAGGTGTAAGATCCGCCATTCCAGCTTCAACCT
*
32930352 TTCCCTCTTCAATTTTAGG
66 ATCCCTCTTCAATTTTAGG
32930371 TTGTAAGATT
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
98 70 1.00
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.41
Consensus pattern (98 bp):
ATTATGACTTCAACCTATCCCTATTTAATTTTAAGGTGTAAGATCCGCCATTCCAGCTTCAACCT
ATCCCTCTTCAATTTTAGGGTGTTAAGTCCGTT
Found at i:32930395 original size:98 final size:97
Alignment explanation
Indices: 32930244--32930625 Score: 328
Period size: 98 Copynumber: 3.9 Consensus size: 97
32930234 CGCCATTGCA
* *** * *
32930244 GCTTCAACCTATCCCTCTTCAATTTTAGGGTGTTAAGTCCGTTATTATGGCTTCAACCTATCCCT
1 GCTTCAATCTATCCCTCTTCAATTTTAGGGTGTTAAGTCCACCATTGTAGCTTCAACCTATCCCT
* **
32930309 ATTTAGTTTTAAGGTGTAAGATCCGCTGTTCCG
66 CTTTAGTTTTAAGGTGTAAGATCC-CTGTTGTG
* * * * ** *
32930342 GCTTCAATCTTTCCCTCTTCAATTTTAGGTTG-TAAGATTCGCCATTGTAGCTTCAATATTTCCC
1 GCTTCAATCTATCCCTCTTCAATTTTAGGGTGTTAAG-TCCACCATTGTAGCTTCAACCTATCCC
* * *
32930406 TC-TTCGATTTTAGGGTGTTAA-ATCCACTATTGTG
65 TCTTTAG-TTTTAAGGTG-TAAGATCC-CTGTTGTG
* * * * * *
32930440 GCTTTAATCTATCCCTCTTCGATTTTAGGGTGTTAA-TCTACCGTTGCAGCTTCAACCTATCTCT
1 GCTTCAATCTATCCCTCTTCAATTTTAGGGTGTTAAGTCCACCATTGTAGCTTCAACCTATCCCT
* * *
32930504 CTTCA-TCTTTAAGGTGTAAGATTCATCGTTGTG
66 CTTTAGT-TTTAAGGTGTAAGATCCCT-GTTGTG
* * * * **
32930537 ACTTCAATCTTTCCTTTTTTGATTTTAGGGTGTTAAGTCCACCA-T-TACGACTTCAACCTATCC
1 GCTTCAATCTATCCCTCTTCAATTTTAGGGTGTTAAGTCCACCATTGTA-G-CTTCAACCTATCC
32930600 CTCTTTAGTTTTAAGGTGTAAGATCC
64 CTCTTTAGTTTTAAGGTGTAAGATCC
32930626 ATTGTTACGG
Statistics
Matches: 223, Mismatches: 49, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
96 6 0.03
97 75 0.34
98 135 0.61
99 7 0.03
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.41
Consensus pattern (97 bp):
GCTTCAATCTATCCCTCTTCAATTTTAGGGTGTTAAGTCCACCATTGTAGCTTCAACCTATCCCT
CTTTAGTTTTAAGGTGTAAGATCCCTGTTGTG
Found at i:32930612 original size:146 final size:147
Alignment explanation
Indices: 32930200--32930626 Score: 425
Period size: 146 Copynumber: 2.9 Consensus size: 147
32930190 TTATGACTTT
* * * * * * ** *
32930200 AACCTATCTCTCTTTAATTTTAGGGTGTTAG-TTCCGCCATTGCAGCTTCAACCTATCCCTCTTC
1 AACCTATCCCTCTTCAATTTTAGGTTGTAAGATT-CACCATTGTAGCTTCAATATTTCCCTCTTC
* ** *
32930264 AATTTTAGGGTGTTAAGTCCGTTATTATGGCTTCAACCTATCCCTATTTAGTTTTAAGGTGTAAG
65 GATTTTAGGGTGTTAAGTCCACTATTATGGCTTCAACCTATCCCTCTTTAGTTTTAAGGTGTAAG
* * *
32930329 ATCCGCTGTTCCGGCTTC
130 ATCCACCGTTCCAGCTTC
* * *
32930347 AATCTTTCCCTCTTCAATTTTAGGTTGTAAGATTCGCCATTGTAGCTTCAATATTTCCCTCTTCG
1 AACCTATCCCTCTTCAATTTTAGGTTGTAAGATTCACCATTGTAGCTTCAATATTTCCCTCTTCG
* * * * * * *
32930412 ATTTTAGGGTGTTAAATCCACTATTGTGGCTTTAATCTATCCCTC-TTCGATTTTAGGGTGTTA-
66 ATTTTAGGGTGTTAAGTCCACTATTATGGCTTCAACCTATCCCTCTTTAG-TTTTAAGGTGTAAG
* *
32930475 ATCTACCGTTGCAGCTTC
130 ATCCACCGTTCCAGCTTC
* * * * * *
32930493 AACCTATCTCTCTTC-ATCTTTAAGG-TGTAAGATTCATCGTTGT-GACTTCAATCTTTCCTTTT
1 AACCTATCCCTCTTCAAT-TTT-AGGTTGTAAGATTCACCATTGTAG-CTTCAATATTTCCCTCT
* * * *
32930555 TTGATTTTAGGGTGTTAAGTCCACCATTACGACTTCAACCTATCCCTCTTTAGTTTTAAGGTGTA
63 TCGATTTTAGGGTGTTAAGTCCACTATTATGGCTTCAACCTATCCCTCTTTAGTTTTAAGGTGTA
32930620 AGATCCA
128 AGATCCA
32930627 TTGTTACGGA
Statistics
Matches: 226, Mismatches: 47, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
145 3 0.01
146 111 0.49
147 110 0.49
148 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.41
Consensus pattern (147 bp):
AACCTATCCCTCTTCAATTTTAGGTTGTAAGATTCACCATTGTAGCTTCAATATTTCCCTCTTCG
ATTTTAGGGTGTTAAGTCCACTATTATGGCTTCAACCTATCCCTCTTTAGTTTTAAGGTGTAAGA
TCCACCGTTCCAGCTTC
Found at i:32938811 original size:12 final size:12
Alignment explanation
Indices: 32938794--32938828 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
32938784 GTACTTTACA
32938794 AATTGATCTTGT
1 AATTGATCTTGT
*
32938806 AATTGAGCTTGT
1 AATTGATCTTGT
*
32938818 AACTGATCTTG
1 AATTGATCTTG
32938829 CATGTCCTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (12 bp):
AATTGATCTTGT
Found at i:32942454 original size:14 final size:15
Alignment explanation
Indices: 32942429--32942457 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32942419 CAACATATAT
32942429 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32942444 ACAAT-AAATGCAAA
1 ACAATAAAATGCAAA
32942458 GGATCACAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.66, C:0.14, G:0.07, T:0.14
Consensus pattern (15 bp):
ACAATAAAATGCAAA
Found at i:32943362 original size:15 final size:15
Alignment explanation
Indices: 32943342--32943371 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32943332 CAACATATAT
32943342 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32943357 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32943372 GGATCACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13
Consensus pattern (15 bp):
ACAATAAAATGCAAA
Found at i:32944292 original size:15 final size:15
Alignment explanation
Indices: 32944272--32944301 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32944262 CAACATATAT
32944272 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32944287 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32944302 GGATCACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13
Consensus pattern (15 bp):
ACAATAAAATGCAAA
Found at i:32944913 original size:929 final size:929
Alignment explanation
Indices: 32940637--32953150 Score: 19978
Period size: 929 Copynumber: 13.6 Consensus size: 929
32940627 ATTTCTTAAG
* * * *
32940637 AAATTAAACCGAATTTTAAATTTTCAAC--AAAAA--AAAAATAATCGACCTGTGACCTGACTCT
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
* * * *
32940698 CTAAAAAAAAGTCCTCAGTGAAGTAG-CTAAGCTGTCGAAACCTTTTTTTTGAAAAAAAATCTCG
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTC-AAGCTATCGAAACCTTTTTTTTG--AAAAAATCTCG
* * * * * * *
32940762 ATTATATTTTGGAAAACACGAAACTGGAGTCGCCACTAAC---ATTTAAAAAAAATAGGTGTGAT
128 ATTATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGAT
* * * * * *
32940824 TGA-TCACCTTTTAAAAACTTTTCAAATCATTAAAAATAAATTTTGGTCTCTGAAACCATAAAAT
193 TGAGTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAAT
*
32940888 GGGTTCGGGAGTCAATTACGAGTAAGGAAGGATTAGA-ACCCTCACACACCCAAAAATTGGTAGC
258 GGGTTCGGGAGTCAATTACGAGTAAGGAAGGATTA-ACACCCTTACACACCCAAAAATTGGTA-C
* * * * *
32940952 -TAATGCATGCATGTCATAATTATTTATTTTG-AAAACATATTTTTTTACGAAGAAAGCTCATTA
321 TTAATGCATGCATGTCATATTTATATATTTTGAAAAAC-TATTTTTTTAAGAAAAAAGCTCGTTA
* * * * * * * *
32941015 TTT-TAATTAATTGAGAAAAAAAATCACATCCTGTAAATTAGGACATAACAATTCGAATTTTCGA
385 TTTCGAATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAA
*
32941079 AAATAGCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAAAAAGGATACTCAA
450 AAATAGCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAA
* * * * * *
32941144 AACAAAGAACCTACGCATATATTTCGGGTAATCACTAAAAGTTTGGCATGGCTCTACCTAGGATA
515 AACAAAGATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATA
* * *
32941209 GACACCTAAGGTTCACTATATGTAGTTTGAGTTCTAGAGT-AAAGGTACCCAAACCA-AAGATTC
580 GGCACCTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTC
* * * * * * * *
32941272 CTCAATCGTCACCCATTACAGGCTCATATGGATGAGTTCGATTCAGGGAGACATATTTCTCATAT
645 CTCAATCCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATAT
* * * * *
32941337 GTTTGCACGAAAGTGAAAACCTCATGAAAACACAAGTACGGATATATCTCAAAAGCAATCCACTA
710 GTTTGCACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTA
* * *
32941402 TCCTGCACGAAGGCGAAAACCTCACGAAGAATTAGCTTCTTAATTCCACTTAGAAAGTATAGTAA
775 TCCTGCACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAA
32941467 CACATGCAAATGTATGCGAAAACATTACAAATTAAATACAAC----AT---AT---AT-----AC
840 CACATGCAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAAC
32941517 AATAAAATGCAAAGGATCACAACTT
905 AATAAAATGCAAAGGATCACAACTT
*
32941542 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAGAA-AATCAACTTGTGGCCTGACTC
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAA-AATAATCGACTTGTGGCCTGACTC
* * * *
32941606 TCTAAAAAAAAGTCCTCAGCGGAGTCGTCAAGATATCGAAACCTTTTTTTT-AAAACAATCTCGA
65 CCTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACCTTTTTTTTGAAAA-AATCTCGA
* *
32941670 TTATATATTGTAAAACATGAAAATGGAGTCGCCATTAAC-TTTTTTTAAAAAAACTAGGTGTGAT
129 TTATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAA-TAGGTGTGAT
* * * *
32941734 TGAGTCATCTTTTAAAAAGTTTTAAAATCATTAAAAACAAATTTTGGTCTCTGAAACCATAAAAT
193 TGAGTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAAT
* * * * *
32941799 GGGTTCGGGAGTCAGTTACGA-TAAAGGAAGGATTAGCACTCTTGCACACCAAAAAATTGGTACT
258 GGGTTCGGGAGTCAATTACGAGT-AAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACT
*
32941863 TAATGCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTATGAAAAAAGCTCGTTATT
322 TAATGCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATT
* *
32941928 TCGAATTAATCGA-TAAAAACAATCACATCATGTAAGTTAGGACAAAACAATTCAAATTCTCAAA
387 TCGAATTAATCGAGT-AAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAA
32941992 AATAGCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTA-ATAAGGATACTCAA
451 AATAGCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGA-AAGGATACTCAA
* * * *
32942056 AACAAAGATCCTATGCATCTATTTCGGGAAATCACTAAAAGTTTGGCATGGCTCTACCTAGGATA
515 AACAAAGATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATA
32942121 GGCACCTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTC
580 GGCACCTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTC
*
32942186 CTCAATCCTTACTCATTATAGGTTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATAT
645 CTCAATCCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATAT
* * * * * *
32942251 GTTTGCACGAAAGTGAAAACCTCACGAAAACACAGGCATGGGTATATCTCGAAAGCAATTCACTA
710 GTTTGCACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTA
* **
32942316 TCCTGCACGGAGGTGAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAA
775 TCCTGCACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAA
*
32942381 CACATGCAAATGTGTGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAAC
840 CACATGCAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAAC
32942446 AAT-AAATGCAAAGGATCACAACTT
905 AATAAAATGCAAAGGATCACAACTT
* *
32942470 AAATTAAATCAAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTAACTCC
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
* *
32942535 CTAAAAAAAAGTCCCCAGTGGAGTTGTCAAGCTATCGAAACCTTTTTTTTGAATAAATCTCGATT
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACCTTTTTTTTGAAAAAATCTCGATT
*
32942600 ATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAACAATAGGTGTGATTGA
131 ATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
* * * *
32942665 GTCACCTTTTAAAAAGTTTTAAAATCATTCGAAACAAATTTTGGTCTTTGAAACCATAAAATAGA
196 GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAATGGG
* *
32942730 TTCGGGAGTCAATTACGAGTAAGGAAGGATTAGCACCCCTACACACCCAAAAATTGGTACTTAAT
261 TTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTAAT
32942795 GCATGCATGTCATATTTATATA---T-------TA-----TTAAGAAAAAAGCTCGTTATTTCGA
326 GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTCGA
* * *
32942845 ATTAATCGAGAAAAACAATCACATCATATAAGTTAGCACATAACAATTCAAATTTTCAAAAATAG
391 ATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAATAG
*
32942910 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTACAAAGGATACTCAAAACAAA
456 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
* * * * * *
32942975 GACCCTATGCACCTATTTCGGGTAATCACTAAAAGTTCAGCATGGCTCTACCTAGGTTAGGCACC
521 GATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCACC
32943040 TAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAAT
586 TAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAAT
*
32943105 CCTTACTCATTTTAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
651 CCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
* *
32943170 ACGAAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTAC
716 ACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTGC
*
32943235 ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCTCTTAGAAAGTATAGTAACACATG
781 ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACATG
32943300 CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
846 CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
32943365 ATGCAAAGGATCACAACTT
911 ATGCAAAGGATCACAACTT
* * *
32943384 AAATTAAATCGAATTTTACATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGTCCTGACTCA
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
* * *
32943449 CTAAAAAAAAGTCCCCAGTGGAATCATCAAGCTATCGAAACCTTTTTTTTTGAATAAATCTCGAT
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACC-TTTTTTTTGAAAAAATCTCGAT
*
32943514 TATATATTGGAAAACATGAAAATGGAGTCACCATTAACTTTTTTTTAAAATAATAGGTGTGATTG
130 TATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTG
* *
32943579 AGTCACCTTTTAAAAAGTTTTAAAATCATTCGAAACAAATTTTGGTCTTTGAAACCATAAAATGG
195 AGTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAATGG
* *
32943644 ATTCGAGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTAA
260 GTTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTAA
32943709 TGCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTCG
325 TGCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTCG
32943774 AATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAATA
390 AATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAATA
32943839 GCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAA
455 GCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAA
32943904 AGATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCAC
520 AGATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCAC
*
32943969 CTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAATAGATTCCTCAA
585 CTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAA
*
32944034 TCCTTACTCATTTTAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTG
650 TCCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTG
32944099 CACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTG
715 CACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTG
*
32944164 CACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCTACTTAGAAAGTATAGTAACACAT
780 CACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACAT
32944229 GCAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAA
845 GCAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAA
32944294 AATGCAAAGGATCACAACTT
910 AATGCAAAGGATCACAACTT
32944314 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
* * * *
32944379 CTAAAAAAAAGTCTCCAATGGAGTCGTAAAGCTATCGAAACCTTTTTTTTGAAAAAATCTTGATT
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACCTTTTTTTTGAAAAAATCTCGATT
32944444 ATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
131 ATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
*
32944509 GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTTTTTAAAACCATAAAATGGG
196 GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAATGGG
* * * *
32944574 TTCGGGAGTCAGTTACGAGTAAGGAGGGATTAGCACCCTTACACGCCCAAAAATTGGTACTTAAT
261 TTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTAAT
32944639 GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTCGA
326 GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTCGA
* * * *
32944704 ATTAATCGACTAAAACAATCATATAATGTAAGTTAGGACAAAACAATTCAAATTTTCAAAAATAG
391 ATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAATAG
32944769 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
456 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
32944834 GATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCACC
521 GATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCACC
* * *
32944899 TAAGGTTTACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAATAGATTCCTCAGT
586 TAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAAT
* * *
32944964 CCTTACTCATTTTAGGCTCATACGGAAAAGTTTGGTTTAGGGAGACATATTTCTCATATGTTTGC
651 CCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
*
32945029 ACGGAAGTGAAAAACTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTGC
716 ACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTGC
* * *
32945094 ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTTTTACTTCCTCTTAGAAAGTATAGAAACACATG
781 ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACATG
32945159 CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
846 CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
32945224 ATGCAAAGGATCACAACTT
911 ATGCAAAGGATCACAACTT
* *
32945243 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGTCCTAACTCC
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
* * *
32945308 CTAAAAAAAAGTCCCCAGTGGAATCATCAAGCTATCGAAACCTGTTTTTTTTGAATAAATCTCGA
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACC--TTTTTTTTGAAAAAATCTCGA
*
32945373 TTATATATTGGAAAACATGAAAATGGAGTCACCATTAAC-TTTTTTTAAAATAATAGGTGTGATT
129 TTATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATT
* *
32945437 GAGTCACCTTTTAAAAAGTTTTAAAATCATTCGAAACAAATTTTGGTCTTTGAAACCATAAAATG
194 GAGTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAATG
*
32945502 GATTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTA
259 GGTTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTA
32945567 ATGCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTC
324 ATGCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTC
32945632 GAATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAAT
389 GAATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAAT
*
32945697 AGCAAGCATTCCTAATTATTATTCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACA
454 AGCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACA
* * * * *
32945762 AAGATCCTATGCACCTATTTCGGGTAATCACTAAAAGTTCGGCACGGCTCTACCTAGGATAGGTA
519 AAGATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCA
*
32945827 CCTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGGACCCAAACCAGTAGATTCCTCA
584 CCTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCA
*
32945892 ATCCTTACTCATTATAGGCTCATACGGAAGAGTTCGATTTAGGGAGACATATTTCTCATATGTTT
649 ATCCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTT
* *
32945957 GCACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATCTCGAAAGCAATCCGCTATCCT
714 GCACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCT
*
32946022 GCACGGAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACA
779 GCACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACA
32946087 TGCAAATGTATGCGAAAACATTACAAATTAAATACAAC----AT---AT---AT-----ACAATA
844 TGCAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATA
32946137 AAATGCAAAGGATCACAACTT
909 AAATGCAAAGGATCACAACTT
*
32946158 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGAGTCC
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
* * * * *
32946223 CTAAAAAAAAGTCTCTAGTGGAGTCGTAAAGCTATCGAAACCATTTTTTTGAAAAAATCTTGATT
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACCTTTTTTTTGAAAAAATCTCGATT
*
32946288 ATACATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
131 ATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
*
32946353 GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTTTTTAAAACCATAAAATGGG
196 GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAATGGG
* * * *
32946418 TTCGGGAGTCAGTTACGAGTAAGGAGGGATTAGCACCCTTACACGCCCAAAAATTGGTACTTAAT
261 TTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTAAT
*
32946483 GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAATAAAAAAGCTCGTTATTTCGA
326 GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTCGA
* * * *
32946548 ATTAATCGACTAAAACAATCATATAATGTAAGTTAGGACAAAACAATTCAAATTTTCAAAAATAG
391 ATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAATAG
32946613 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
456 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
32946678 GATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCACC
521 GATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCACC
*
32946743 TAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAATAGATTCCTCAAT
586 TAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAAT
*
32946808 CCTTACTCATTTTAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
651 CCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
*
32946873 ACGGAAGTGAAAACCTCACGAAAACATAGGTACGGATATATGTCGAAAGCAATCCACTATCCTGC
716 ACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTGC
*
32946938 ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCTCTTAGAAAGTATAGTAACACATG
781 ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACATG
32947003 CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
846 CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
32947068 ATGCAAAGGATCACAACTT
911 ATGCAAAGGATCACAACTT
*
32947087 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGTCCTGACTCC
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
*
32947152 CTAAAAAAAAGTCCCCAGTGGAGTCATCAAGCTATCGAAACCTTTTTTTTGAAAAAATCTCGATT
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACCTTTTTTTTGAAAAAATCTCGATT
32947217 ATATATTGGAAAACATGAAAATGGAGTCGCCATTAAC--TTTTTTAAAATAATAGGTGTGATTGA
131 ATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
* * *
32947280 GTCACCTTTTAAAAAGTTTTAAAATCATTCGAAACAAATTTTGGTCTTTGAAACCATAAAATGGA
196 GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAATGGG
32947345 TTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTAAT
261 TTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTAAT
32947410 GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAAGAAAAAAGCTCGTTATTTCG
326 GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTT-AAGAAAAAAGCTCGTTATTTCG
* * *
32947475 AATTAATCGAGTAAAACAATCATACCATGTAAGTTAGGACAGAACAATTCAAATTTTCAAAAATA
390 AATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAATA
*
32947540 GCAAGCATTCTTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAA
455 GCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAA
32947605 AGATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCAC
520 AGATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCAC
32947670 CTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAA
585 CTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAA
* * *
32947735 TCCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTCTAGGGATACATATTTCTAATATGTTTG
650 TCCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTG
32947800 CACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTG
715 CACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTG
* *
32947865 CACGGAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTGGAAAGTATAGTAACACAT
780 CACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACAT
32947930 GCAAATGTATGCGAAAACATTACAAATTAAATACAAC----AT---AT---AT-----ACAATAA
845 GCAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAA
32947980 AATGCAAAGGATCACAACTT
910 AATGCAAAGGATCACAACTT
*
32948000 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCAACTTGTGGCCTGACTCC
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
* * *
32948065 CTAAAAAAAAGTCTCCAGTGGAGTCGTAAAGCTATCGAAACCTTTTTTTTGAAAAAATCTTGATT
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACCTTTTTTTTGAAAAAATCTCGATT
*
32948130 ATATATTGGAAAACATGAAAATGGAGTCGCTATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
131 ATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
*
32948195 GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTTTTTAAAACCATAAAATGGG
196 GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAATGGG
* * * *
32948260 TTCGGGAGTCAGTTACGAGTAAGGAGGGATTAGCACCCTTACACGCCCAAAAATTGGTACTTAAT
261 TTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTAAT
* * *
32948325 GCATGCATGTCATATTTATATATTTTGAAAAACTATTCTTTTAAGAGAAAAGCTCGTTATTTTGA
326 GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTCGA
*
32948390 ATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACAGAACAATTCAAATTTTCAAAAATAG
391 ATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAATAG
32948455 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
456 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
32948520 GATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCACC
521 GATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCACC
* *
32948585 TAAGGTTCACTATATGAAATTTGAGTTCTAGAGTAAAAGGTACCCAAACCAATAGATTCCTCAAT
586 TAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAAT
* *
32948650 CCTTACTCATTTTAGGCTCATATGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
651 CCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
*
32948715 ACGAAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTGC
716 ACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTGC
32948780 ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACATG
781 ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACATG
32948845 CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
846 CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
32948910 ATGCAAAGGATCACAACTT
911 ATGCAAAGGATCACAACTT
*
32948929 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGACCTGACTCC
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
* * *
32948994 CTAAAAAAAAG-ACCCAGTGGAGTCATCAAGCTATCGAAAACTTTTTTTTTGAAAAAATCTCGAT
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCG-AAACCTTTTTTTTGAAAAAATCTCGAT
32949058 TATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTTAAAATAATAGGTGTGATT
130 TATATATTGGAAAACATGAAAATGGAGTCGCCATTAAC-TTTTTTTTAAAATAATAGGTGTGATT
* * *
32949123 GAGTCACCTTTTAAAAAGTTTTAAAATCATTCGATACAAATTTTGGTCTTTAAAACCATTAAATG
194 GAGTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAATG
* *
32949188 GATTCGGGAGTCAATTACGAGTATGGAAGGATTAACACCCTTACACACCC-AAAATTGGTACTTA
259 GGTTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTA
*
32949252 ATGCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAATCTCGTTATTTC
324 ATGCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTC
* * *
32949317 GAATTAATCGAGTAAAACAATCATACCATGTAAGTTAGGACAGAACAATTCAAATTTTCAAAAAT
389 GAATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAAT
32949382 AGCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACA
454 AGCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACA
*
32949447 AAGATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGACATGGCTCTACCTAGGATAGGCA
519 AAGATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCA
32949512 CCTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCA
584 CCTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCA
* * * *
32949577 ACCCTTACTCATTATAGGTTCATACGGAAGAGTTCGGTCTAGGGATACATATTTCTCATATGTTT
649 ATCCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTT
* * *
32949642 GCACGGAAGTGAAAACGTCACGAAAACACAGGTACGGATATATCTCGAAAGCAATCCACTATCTT
714 GCACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCT
* *
32949707 GCACGGAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTGGAAAGTATAGTAACACA
779 GCACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACA
32949772 TGCAAATGTATGCGAAAACATTACAAATTAAATACAAC----AT---AT---AT-----ACAATA
844 TGCAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATA
32949822 AAATGCAAAGGATCACAACTT
909 AAATGCAAAGGATCACAACTT
* * *
32949843 AAGTTAAATCAAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCAACTTGTGGCCTGACTCC
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
* * *
32949908 CTAAAAAAAAGTCTCCAGTGGAGTCGTAAAGCTATCGAAACCTTTTTTTTGAAAAAATCTTGATT
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACCTTTTTTTTGAAAAAATCTCGATT
*
32949973 ATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGAGTGATTGA
131 ATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
* *
32950038 GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTTTTTAAAACCATGAAATGGG
196 GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAATGGG
* * * *
32950103 TTCGGGAGTCAGTTACGAGTAAGGAGGGATTAGCACCCTTACACGCCCAAAAATTGGTACTTAAT
261 TTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTAAT
*
32950168 GCATGCATGTCATATTTATATATTTTGAAAAACTATTCTTTTAAGAAAAAAGCTCGTTATTTCGA
326 GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTCGA
*
32950233 ATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACAGAACAATTCAAATTTTCAAAAATAG
391 ATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAATAG
32950298 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
456 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
32950363 GATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCACC
521 GATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCACC
*
32950428 TAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAATAGATTCCTCAAT
586 TAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAAT
*
32950493 CCTTACTCATTTTAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
651 CCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
* *
32950558 ACGAAAGTGAAAACCTCACAAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTGC
716 ACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTGC
32950623 ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACATG
781 ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACATG
32950688 CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
846 CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
32950753 ATGCAAAGGATCACAACTT
911 ATGCAAAGGATCACAACTT
* *
32950772 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGTCTTGACTCC
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
* * *
32950837 CTAAAAAAATGTCCCCAGTGGAGTCATCAAGCTATCGAAACTTTTTTTTTGAAAAAATCTCGATT
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACCTTTTTTTTGAAAAAATCTCGATT
* *
32950902 GTATATTGGAAAACATGAAAATGGTGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
131 ATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
* * * * *
32950967 GTCACTTTTTAAAAAGTTTTAAAATCATTCGAAACAAATTTTGGTCTTTGAAACCTTAAAATGGA
196 GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAATGGG
*
32951032 TTCGGGAGTCAATTACGAGTAAGGAAGGATTAATACCCTTACACACCCAAAAATTGGTACTTAAT
261 TTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTAAT
32951097 GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTCGA
326 GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTCGA
32951162 ATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAATAG
391 ATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAATAG
32951227 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
456 CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
* * * *
32951292 GATCCTATGCACCTATTTCGGGTAATCACTAAAAGTTCGTCATGGCTCTACCTAGGATAGGCACC
521 GATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCACC
*
32951357 TAAGGTTCAATATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAAT
586 TAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAAT
* *
32951422 CCTTACCCATTATAGCCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
651 CCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
* ** * * *
32951487 ACGGAAGTGAAAACCTTACGAAAACACAGGTACGGATATATCCCGAAAGCAGTCTATTATCCTGC
716 ACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTGC
* ** * * * *
32951552 ACGGAGGCTTAAACCTTATGAAGAAGTAGCTTCTTAGTTCCACTTCGAAAGTATAGTAACACATG
781 ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACATG
* *
32951617 CAATTGTATGCGAAAAAATTACAAATTAAATACAACATATATACAATAAAATGC-AAA-AATAAA
846 CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
*
32951680 ATGCAAAGGATCACAATTT
911 ATGCAAAGGATCACAACTT
* *
32951699 AAATTAAA-CTGAATTTTAAATTTTCAAC-AAAAAACCAAAAATAATCGGCTTATGGCCTGACTC
1 AAATTAAATC-GAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTC
* * * * *
32951762 TCTAAAAAAAAGTCCCCATTGGAGTCGCCAAGCTGTTGAAACCATTTTTTTTGAAAATAAAACAA
65 CCTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACC-TTTTTTTTG-----AAAA-AA
* * ** * *** * * *
32951827 GTTTCGATTATATTTTGGAAAACACAAAAATGGAGTCGTCGCCAACCTTTTTTTAAGAAAAATAT
123 -TCTCGATTATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAA-AATAATAG
* * * *
32951892 TTATGATTGGGTCACCTTTTAAAAA-TTTTAAAAATCATTA-AAATCAAATTTTGGTCTCTAAAA
186 GTGTGATTGAGTCACCTTTTAAAAAGTTTT-AAAATCATTAGAAA-CAAATTTTGGTCTTTAAAA
* * *
32951955 CCATAAAATGGGTTCGGGAGTCAGTTATGTGTAAGGAAGGATTAACACCCTTACACACCCAAAAA
249 CCATAAAATGGGTTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCC-AAAA
* * *
32952020 ATTGGTAGC-TAATGCATGCATGTCATATTTATTTATTTTGAAAAAATATTTTTTTACA-AAGAA
313 ATTGGTA-CTTAATGCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTA-AGAAAAA
* * * * * * *
32952083 AGCTTGTTATTTCTAATTAATCGAGAAAAAAAATCACATCCTGTAAGTTAGGACATAAAAATTCG
376 AGCTCGTTATTTCGAATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCA
* * * * *
32952148 AATTTTCGAAAATAGCAAGCATTCCTAATTGTTATCCCAAAATCTCGTATTTAAACTTTAAAAAG
441 AATTTTCAAAAATAGCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAG
* * *
32952213 GATACTCAAAACAAAGAACCTATGCATCTATTTCGGGTAATCACTAAAAGTTCGGCATGGCTCTA
506 GATACTCAAAACAAAGATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTA
* *
32952278 CCTAGGATAGGCACCTAAGGTTCACTATATGTAGTTTGAGTTCTAGAGT-GAAGGTACCCAAACC
571 CCTAGGATAGGCACCTAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACC
* * * * * * ** * * * *
32952342 AGCAGATTCTTCAATCCTCACCCATTATAGACTGATACGGGTGAGATCGATTCAAGGAGACATAT
636 AGTAGATTCCTCAATCCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATAT
* * **
32952407 TTCTCATATGTTTGCACGGAAGTGAAAACCTCATGAAAACACAGGTACGGTTATATCCCGAAAGC
701 TTCTCATATGTTTGCACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGC
* * * * *
32952472 AATTCACTATCCTGCATGGAGGCGAAAACCTCACGAAGAAGTAGCTTCTTACTTCCTCTTAGAAA
766 AATCCACTATCCTGCACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAA
32952537 GTATAGTAACACATGCAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAA
831 GTATAGTAACACATGCAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAA
32952602 ATGC-AAA-AATAAAATGCAAAGGATCACAACTT
896 ATGCAAAACAATAAAATGCAAAGGATCACAACTT
* * ** * * *
32952634 AAATTAAACCGAATTTTAAATTTTCAAC--AAAAACCAAAAATAATTGGTTTATGACCTGACTCT
1 AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
** * * * * *
32952697 CT-AAAAAAAGTCCTTAGTGGAGTCGCCAAGTTGTCTAAACCATTTTTTTTGGAAAAAAAAGTTT
66 CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACC-TTTTTTTT-G--AAAAAA-TCT
* * ** ** * ** *
32952761 TGATTATATTTTGGAAAACACAAAAATGGAGTCGCCGCTAACCTTTTTTTTTAAAAAAATAATTA
126 CGATTATATATTGGAAAACATGAAAATGGAGTCGCCATTAA-C-TTTTTTTTAAAATAATAGGTG
* * * * *
32952826 TGATTGGGTCACCTTTTAAAAATTTTTAAAATCATTAAAAACAAATTTTGGTCTCTAAAACAATA
189 TGATTGAGTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATA
* * * * * * *
32952891 AAATGGGTTTGGGAGTCATTTACGAATAAGAAAGTATTAACACCCTTACACGCCCAAAAATTGAT
254 AAATGGGTTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGT
* * * * *
32952956 AGC-TAATGCATGCATGTCATATTTATTTATTTTGAAAAAATATTTGTTTATA-AAGAAAGCTCA
319 A-CTTAATGCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTA-AGAAAAAAGCTCG
* * * *
32953019 TTATTTCAAATTAATCGAG-AAAAAAATCACATCCTATAAGTTAGGACATAACAATTCGAAATTT
382 TTATTTCGAATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTC-AAATTT
* * *
32953083 T-GAAAATAGCAAGCATTCCTAATTATTATCCCAAAATCTCGTATTTTAACTTT-GAAAAGAATA
446 TCAAAAATAGCAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAG-AAAGGATA
32953146 CTCAA
510 CTCAA
32953151 TTATCTCGGT
Statistics
Matches: 10889, Mismatches: 584, Indels: 248
0.93 0.05 0.02
Matches are distributed among these distances:
905 27 0.00
906 4 0.00
907 47 0.00
909 75 0.01
910 18 0.00
911 166 0.02
912 217 0.02
913 902 0.08
914 2243 0.21
915 570 0.05
918 13 0.00
919 2 0.00
920 2 0.00
921 10 0.00
922 2 0.00
923 2 0.00
924 10 0.00
925 5 0.00
926 69 0.01
927 251 0.02
928 846 0.08
929 2788 0.26
930 1595 0.15
931 175 0.02
932 20 0.00
933 44 0.00
934 86 0.01
935 410 0.04
936 288 0.03
937 2 0.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (929 bp):
AAATTAAATCGAATTTTAAATTTTCAACAAAAAAACCAAAAATAATCGACTTGTGGCCTGACTCC
CTAAAAAAAAGTCCCCAGTGGAGTCGTCAAGCTATCGAAACCTTTTTTTTGAAAAAATCTCGATT
ATATATTGGAAAACATGAAAATGGAGTCGCCATTAACTTTTTTTTAAAATAATAGGTGTGATTGA
GTCACCTTTTAAAAAGTTTTAAAATCATTAGAAACAAATTTTGGTCTTTAAAACCATAAAATGGG
TTCGGGAGTCAATTACGAGTAAGGAAGGATTAACACCCTTACACACCCAAAAATTGGTACTTAAT
GCATGCATGTCATATTTATATATTTTGAAAAACTATTTTTTTAAGAAAAAAGCTCGTTATTTCGA
ATTAATCGAGTAAAACAATCACATCATGTAAGTTAGGACATAACAATTCAAATTTTCAAAAATAG
CAAGCATTCCTAATTATTATCCCAAAATCTCATATTTTAACTTTAGAAAGGATACTCAAAACAAA
GATCCTATGCATCTATTACGGGTAATCACTAAAAATTCGGCATGGCTCTACCTAGGATAGGCACC
TAAGGTTCACTATATGAAGTTTGAGTTCTAGAGTAAAAGGTACCCAAACCAGTAGATTCCTCAAT
CCTTACTCATTATAGGCTCATACGGAAGAGTTCGGTTTAGGGAGACATATTTCTCATATGTTTGC
ACGGAAGTGAAAACCTCACGAAAACACAGGTACGGATATATGTCGAAAGCAATCCACTATCCTGC
ACGAAGGCAAAAACCTCACGAAGAAGTAGCTTCTTACTTCCACTTAGAAAGTATAGTAACACATG
CAAATGTATGCGAAAACATTACAAATTAAATACAACATATATACAATAAAATGCAAAACAATAAA
ATGCAAAGGATCACAACTT
Found at i:32945221 original size:15 final size:15
Alignment explanation
Indices: 32945201--32945230 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32945191 CAACATATAT
32945201 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32945216 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32945231 GGATCACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13
Consensus pattern (15 bp):
ACAATAAAATGCAAA
Found at i:32947065 original size:15 final size:15
Alignment explanation
Indices: 32947045--32947074 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32947035 CAACATATAT
32947045 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32947060 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32947075 GGATCACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13
Consensus pattern (15 bp):
ACAATAAAATGCAAA
Found at i:32948907 original size:15 final size:15
Alignment explanation
Indices: 32948887--32948916 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32948877 CAACATATAT
32948887 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32948902 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32948917 GGATCACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13
Consensus pattern (15 bp):
ACAATAAAATGCAAA
Found at i:32950750 original size:15 final size:15
Alignment explanation
Indices: 32950730--32950759 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32950720 CAACATATAT
32950730 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32950745 ACAATAAAATGCAAA
1 ACAATAAAATGCAAA
32950760 GGATCACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13
Consensus pattern (15 bp):
ACAATAAAATGCAAA
Found at i:32951679 original size:13 final size:13
Alignment explanation
Indices: 32951661--32951686 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32951651 ACATATATAC
32951661 AATAAAATGCAAA
1 AATAAAATGCAAA
32951674 AATAAAATGCAAA
1 AATAAAATGCAAA
32951687 GGATCACAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (13 bp):
AATAAAATGCAAA
Found at i:32952614 original size:13 final size:13
Alignment explanation
Indices: 32952596--32952621 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32952586 ACATATATAC
32952596 AATAAAATGCAAA
1 AATAAAATGCAAA
32952609 AATAAAATGCAAA
1 AATAAAATGCAAA
32952622 GGATCACAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (13 bp):
AATAAAATGCAAA
Found at i:32953929 original size:37 final size:37
Alignment explanation
Indices: 32953877--32953953 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
32953867 GTCTTTAATC
*
32953877 AAACGACGTCGTTTTGATGCCTATTCTATTAGACCCA
1 AAACGACGTCATTTTGATGCCTATTCTATTAGACCCA
* *
32953914 AAACGACGTCATTTTGATGCTTATTGTATTAGACCCA
1 AAACGACGTCATTTTGATGCCTATTCTATTAGACCCA
32953951 AAA
1 AAA
32953954 TGGCATCGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (37 bp):
AAACGACGTCATTTTGATGCCTATTCTATTAGACCCA
Found at i:32954626 original size:26 final size:27
Alignment explanation
Indices: 32954584--32954641 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
32954574 TTATACACGA
* * *
32954584 GATTTACAATCTTCTTTTTGTAGATTT
1 GATTTACAATCTCCTTTTCGGAGATTT
32954611 GATTTACAATC-CCTTTTCGGAGATTT
1 GATTTACAATCTCCTTTTCGGAGATTT
32954637 GATTT
1 GATTT
32954642 TCTTTCCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.22, C:0.14, G:0.14, T:0.50
Consensus pattern (27 bp):
GATTTACAATCTCCTTTTCGGAGATTT
Found at i:32962480 original size:28 final size:28
Alignment explanation
Indices: 32962440--32962493 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
32962430 GATATCCGAT
32962440 TTACTCCCTATTGACCCAAAGGTCATGC
1 TTACTCCCTATTGACCCAAAGGTCATGC
32962468 TTACTCCCTATTGACCCAAAGGTCAT
1 TTACTCCCTATTGACCCAAAGGTCAT
32962494 TATGCTCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (28 bp):
TTACTCCCTATTGACCCAAAGGTCATGC
Found at i:32962517 original size:36 final size:36
Alignment explanation
Indices: 32962470--32962566 Score: 149
Period size: 36 Copynumber: 2.7 Consensus size: 36
32962460 GGTCATGCTT
*
32962470 ACTCCCTATTGACCCAAAGGTCATTATGCTCATTTC
1 ACTCCCTATTGACCCAAAGGTCATGATGCTCATTTC
* * *
32962506 ACTCCTTATTGATCCAAAGGTCATGATGCTCATTTT
1 ACTCCCTATTGACCCAAAGGTCATGATGCTCATTTC
*
32962542 ACTCCCTGTTGACCCAAAGGTCATG
1 ACTCCCTATTGACCCAAAGGTCATG
32962567 CCTGGTACCA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (36 bp):
ACTCCCTATTGACCCAAAGGTCATGATGCTCATTTC
Found at i:32975304 original size:262 final size:262
Alignment explanation
Indices: 32974832--32975315 Score: 887
Period size: 262 Copynumber: 1.8 Consensus size: 262
32974822 AAATTATACT
* *
32974832 CTAGGATAATCAAAATTCTTATATTAGACATTGATGGATTTATATCAATAATGCTTTAATATTTG
1 CTAGGATAATCAAAATTCTTATATTAGACACTGATGGATTTATATCAATAAAGCTTTAATATTTG
*
32974897 TATTTCTTGTAACCTACTAAACTTATATTGTTTCTAGCTAAGAATGGTAAAATGCTCACTTATCA
66 TATTTCTTGTAACCTACTAAACATATATTGTTTCTAGCTAAGAATGGTAAAATGCTCACTTATCA
*
32974962 TGTTAGAATTATCAAGATATACATAATGCCTAAGCAGATGTTAAGAACATAATCTTTGTATAATA
131 TGTTAGAATTATCAAGAAATACATAATGCCTAAGCAGATGTTAAGAACATAATCTTTGTATAATA
*
32975027 CAACTTCAAGCTCATTTACCTTTCTCTCATTAAATTGTATAATCTCATTACAACTATCTGTATTG
196 CAACTTCAAGCTCATTTAACTTTCTCTCATTAAATTGTATAATCTCATTACAACTATCTGTATTG
32975092 TA
261 TA
* *
32975094 CTAGGATAATCAAAATTCTTATGTTAGACACTGATGGATTTATATTAATAAAGCTTTAATATTTG
1 CTAGGATAATCAAAATTCTTATATTAGACACTGATGGATTTATATCAATAAAGCTTTAATATTTG
*
32975159 TATTTCTTGTAACCTACTGAACATATATTGTTTCTAGCTAAGAATGGTAAAATGCTCACTTATCA
66 TATTTCTTGTAACCTACTAAACATATATTGTTTCTAGCTAAGAATGGTAAAATGCTCACTTATCA
32975224 TGTTAGAATTATCAAGAAATACATAATGCCTAAGCAGATGTTAAGAACATAATCTTTGTATAATA
131 TGTTAGAATTATCAAGAAATACATAATGCCTAAGCAGATGTTAAGAACATAATCTTTGTATAATA
*
32975289 CAACTTCAGGCTCATTTAACTTTCTCT
196 CAACTTCAAGCTCATTTAACTTTCTCT
32975316 TGTTATTTCC
Statistics
Matches: 213, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
262 213 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (262 bp):
CTAGGATAATCAAAATTCTTATATTAGACACTGATGGATTTATATCAATAAAGCTTTAATATTTG
TATTTCTTGTAACCTACTAAACATATATTGTTTCTAGCTAAGAATGGTAAAATGCTCACTTATCA
TGTTAGAATTATCAAGAAATACATAATGCCTAAGCAGATGTTAAGAACATAATCTTTGTATAATA
CAACTTCAAGCTCATTTAACTTTCTCTCATTAAATTGTATAATCTCATTACAACTATCTGTATTG
TA
Found at i:32982043 original size:64 final size:64
Alignment explanation
Indices: 32981969--32982096 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
32981959 AATAATTAAA
*
32981969 TAACCATACTTCCACTCCCTAATTCCCCACAATGGGATTAGTTCCTCATGGTGTCTTTTGACAT
1 TAACCATACTTCCACTCCCTAATCCCCCACAATGGGATTAGTTCCTCATGGTGTCTTTTGACAT
32982033 TAACCATACTTCCACTCCCTAATCCCCCACAATGGGATTAGTTCCTCATGGTGTCTTTTGACAT
1 TAACCATACTTCCACTCCCTAATCCCCCACAATGGGATTAGTTCCTCATGGTGTCTTTTGACAT
32982097 CATAGATTCA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.34
Consensus pattern (64 bp):
TAACCATACTTCCACTCCCTAATCCCCCACAATGGGATTAGTTCCTCATGGTGTCTTTTGACAT
Found at i:32996094 original size:22 final size:22
Alignment explanation
Indices: 32996069--32996115 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
32996059 AAAATTAAAG
* *
32996069 GTTAAACTGTAATTTTGGAAAA
1 GTTAAAATGTAATTTTGCAAAA
32996091 GTTAAAATGTAATTTTGCAAAA
1 GTTAAAATGTAATTTTGCAAAA
32996113 GTT
1 GTT
32996116 TAAGGGGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.17, T:0.38
Consensus pattern (22 bp):
GTTAAAATGTAATTTTGCAAAA
Found at i:32996196 original size:30 final size:30
Alignment explanation
Indices: 32996110--32996196 Score: 77
Period size: 30 Copynumber: 2.9 Consensus size: 30
32996100 TAATTTTGCA
* * *
32996110 AAAGTTTAAGGGGTCAAAACATAAGTCTTGG
1 AAAGTTT-AGGGGTCAAAACACAATTTTTGG
****
32996141 AAAGTTTTA-GGGTCAAATTTGAATTTTTGG
1 AAAG-TTTAGGGGTCAAAACACAATTTTTGG
*
32996171 ATAGTTTAGGGGTCAAAACACAATTT
1 AAAGTTTAGGGGTCAAAACACAATTT
32996197 CTAAATAAAA
Statistics
Matches: 43, Mismatches: 11, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
29 4 0.09
30 31 0.72
31 5 0.12
32 3 0.07
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (30 bp):
AAAGTTTAGGGGTCAAAACACAATTTTTGG
Found at i:32997662 original size:46 final size:46
Alignment explanation
Indices: 32997542--32997665 Score: 140
Period size: 46 Copynumber: 2.7 Consensus size: 46
32997532 TATAAGATTG
* * * * * *
32997542 GATGGCTTCACTCTGCCCTTTTTGACTTAAGGGTAAGAGATTTGAT
1 GATGGCTTCAATCTGCCCTTCTTGACTTAGGGGTAAAAGATTGGAC
* * * *
32997588 AATGTCTTCAATCTACTCTTCTTGACTTAGGGGTAAAAGATTGGAC
1 GATGGCTTCAATCTGCCCTTCTTGACTTAGGGGTAAAAGATTGGAC
* *
32997634 GATGGCTTCAATCTGCCCCTCTTAACTTAGGG
1 GATGGCTTCAATCTGCCCTTCTTGACTTAGGG
32997666 TTACAAGACT
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
46 62 1.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (46 bp):
GATGGCTTCAATCTGCCCTTCTTGACTTAGGGGTAAAAGATTGGAC
Found at i:32997924 original size:123 final size:122
Alignment explanation
Indices: 32997746--32999232 Score: 825
Period size: 123 Copynumber: 11.8 Consensus size: 122
32997736 TTATTTGGCT
* * * * * * **
32997746 CACTTCTCTATATCTCATCA-AGAAGATAAGGTTTGAAGTTTCACTCGCATTGAGCTTTGCTTCA
1 CACTTCTATGTATCTCATCAGA-AAGAT-GGGTTTGAAGTTTCAATCACATTAAGCTTCACTTCA
32997810 TTATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACC
64 TTATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACC
* * * * * *
32997869 CTCTTCTATGTATCTCATTAGAAAGATGGTGTTTGAAGTTTCAATCACATTGAGCTCCGCTTCGT
1 CACTTCTATGTATCTCATCAGAAAGATGG-GTTTGAAGTTTCAATCACATTAAGCTTCACTTCAT
* * *
32997934 TGA-TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCACTTCTTTGTTTTAACC
65 T-ATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACC
* *
32997992 CACTTCTCTGTATCTCATCA-AGAAGATAGGGTTTGAAGTTTCACA-CATATTAAGCTTCACTTC
1 CACTTCTATGTATCTCATCAGA-AAGAT-GGGTTTGAAGTTTCA-ATCACATTAAGCTTCACTTC
* * * * * ** *
32998055 ATTATTTTAGTCTAGTTCTTTGTATCTCATTAGAAAGATGACTGCTTCATTGTTTTAATC
63 ATTATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACC
* * * * * ** * * *
32998115 CACTTTTTTGTACCTCATCAGAAAGATGGGGATTTAAAGTTTCACTCGTATTAAGCCTCAATTTA
1 CACTTCTATGTATCTCATCAGAAAGAT-GGG-TTTGAAGTTTCAATCACATTAAGCTTCACTTCA
* * * ** * * * *
32998180 TTATTCTGGTCTACTTCTCTGTGTCTCATTA-GAATGATTG--GGCTTGA-AG-TTTCACT
64 TTATTTTGGTCTACTTCTCTGTATCTCATCAGGAA-GA-TGACCACTTCATTGTTTTAACC
* ** ** *** * ** *
32998236 CACATTGAGCT-TCGCT-TCGTTTATTTG--ATCTTCTTCTCTGTA-TCTCATCAAGAAGATGGG
1 CAC-TT---CTAT-G-TATC--TCATCAGAAAGATGGGT-T-TGAAGT-T--TCAATCACA----
* * * *
32998296 GGTTTGAAGTTTCACTCGCATTGAGCTTCACTTTATTGTTTTGGTCAACTTCTTTGTATCTTATC
49 ---TT-AAGCTTCAC-----------TTCA--TTA---TTTTGGTCTACTTCTCTGTATCTCATC
* * * *
32998361 AAGAAGATGACCAGTTTATTG-TTTGACC
94 AGGAAGATGACCACTTCATTGTTTTAACC
* * * * * * *
32998389 CACTTCTCTGTATCTCATGAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC-TCTGCTTCG
1 CACTTCTATGTATCTCATCAGAAAGAT-GGGTTTGAAGTTTCAATCACATTAAGCTTC-ACTTCA
* ** * * *
32998453 TTGA-TTTGGTCTATTTCTCTGTATCTCATCAGGAAGATGACTGCTTCATTTTTTTGATC
64 TT-ATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACC
* * * * *
32998512 CACTTCTCTGTATCTCATTAGGAAGATGGGGGTTTGAAGTTTCACTCATATTAAGCTTCACTTCA
1 CACTTCTATGTATCTCATCAGAAAGAT--GGGTTTGAAGTTTCAATCACATTAAGCTTCACTTCA
* * * * * * * *
32998577 TTGTTTTGGTCTAGTTCTCTATATCTCATCTGAAACATGACTACTTCATTGTTTTAATC
64 TTATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACC
* * * * * * * * * **
32998636 TACTTCTCTGTACCACATCAGGAAGATGGGGATTTGAAGTTTCACTCGCATTGAGCCTCGGTTCA
1 CACTTCTATGTATCTCATCAGAAAGAT-GGG-TTTGAAGTTTCAATCACATTAAGCTTCACTTCA
* * * *
32998701 TTATTTTGGTTTACTTCTCTATACCTCATTAGGAAGATGACCACTTCATTGTTTTAACC
64 TTATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACC
* * * * * * * *
32998760 TACTTCTCTGTATCTCATCAGGAAGATGGTGTTTGAAGTTCCACTCACATTGAGCTCCGCTTCAT
1 CACTTCTATGTATCTCATCAGAAAGATGG-GTTTGAAGTTTCAATCACATTAAGCTTCACTTCAT
* * * * * *
32998825 TGA-TTTGGTCCACTGCTCTGTATCTCATCAGGAAGATGACTACTTCATTATTTTCATC
65 T-ATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACC
* * * * * * * ** * *
32998883 CACTTTTCTGGATCTTATCAGGAAGATGAGGGTTTAAAGTTTCATTTGCATTGAGCTTCGCTTCA
1 CACTTCTATGTATCTCATCAGAAAGAT--GGGTTTGAAGTTTCAATCACATTAAGCTTCACTTCA
** * *
32998948 TTATTTTGGTCTACTTCTCTGTATCTCATCAAAAAGATGACCACTTCATTATTTTGACC
64 TTATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACC
* * * * * * * * **
32999007 CACTTCTCTGTATCTCATGAGGAAGATGGGGTTCGAAGTTTCACTCACATTGAGCTCCGCTTTGT
1 CACTTCTATGTATCTCATCAGAAAGAT-GGGTTTGAAGTTTCAATCACATTAAGCTTCACTTCAT
* * * * *
32999072 TGA-TTTGGTTTACTTCTCTGTATCTCATCAGGAAGATGACTACTTTATTGTTTTGATC
65 T-ATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACC
* * * * * * * * *
32999130 CACTTCTCTATATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCGCATTGAGATTCGCTTTA
1 CACTTCTATGTATCTCATCAGAAAGAT--GGGTTTGAAGTTTCAATCACATTAAGCTTCACTTCA
*
32999195 TTATTTTGGTATACTTCTCTGTATCTCATCAGGAAGAT
64 TTATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGAT
32999233 AGGGTTTGAA
Statistics
Matches: 1078, Mismatches: 212, Indels: 147
0.75 0.15 0.10
Matches are distributed among these distances:
121 7 0.01
122 43 0.04
123 473 0.44
124 437 0.41
125 16 0.01
126 2 0.00
127 11 0.01
134 2 0.00
135 6 0.01
137 2 0.00
138 3 0.00
139 2 0.00
146 8 0.01
147 4 0.00
148 8 0.01
149 9 0.01
150 4 0.00
151 24 0.02
152 8 0.01
153 9 0.01
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (122 bp):
CACTTCTATGTATCTCATCAGAAAGATGGGTTTGAAGTTTCAATCACATTAAGCTTCACTTCATT
ATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACC
Found at i:32998311 original size:76 final size:76
Alignment explanation
Indices: 32998099--32998369 Score: 208
Period size: 76 Copynumber: 3.6 Consensus size: 76
32998089 AAGATGACTG
* * * * * ** * *
32998099 CTTCATTGTTTTAATCCACTTTTTTGTACCTCATC-AGAAAGATGGGGATTTAAAGTTTCACTCG
1 CTTCATTGTTTTGATCAACTTCTCTGTATCTCATCAAG-AAGATGGGGGCTTGAAGTTTCACTCA
* * *
32998163 TATTAAGCCTCA
65 CATTGAGCTTCA
* * * * * * * * *
32998175 ATTTATTATTCTGGTCTACTTCTCTGTGTCTCAT-TAGAATGAT-TGGGCTTGAAGTTTCACTCA
1 CTTCATTGTTTTGATCAACTTCTCTGTATCTCATCAAGAA-GATGGGGGCTTGAAGTTTCACTCA
*
32998238 CATTGAGCTTCG
65 CATTGAGCTTCA
* ** * *
32998250 CTTCGTT-TATTTGATCTTCTTCTCTGTATCTCATCAAGAAGATGGGGGTTTGAAGTTTCACTCG
1 CTTCATTGT-TTTGATCAACTTCTCTGTATCTCATCAAGAAGATGGGGGCTTGAAGTTTCACTCA
32998314 CATTGAGCTTCA
65 CATTGAGCTTCA
* * * *
32998326 CTTTATTGTTTTGGTCAACTTCTTTGTATCTTATCAAGAAGATG
1 CTTCATTGTTTTGATCAACTTCTCTGTATCTCATCAAGAAGATG
32998370 ACCAGTTTAT
Statistics
Matches: 150, Mismatches: 39, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
74 1 0.01
75 53 0.35
76 95 0.63
77 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.42
Consensus pattern (76 bp):
CTTCATTGTTTTGATCAACTTCTCTGTATCTCATCAAGAAGATGGGGGCTTGAAGTTTCACTCAC
ATTGAGCTTCA
Found at i:32998595 original size:124 final size:124
Alignment explanation
Indices: 32998259--32999232 Score: 1168
Period size: 124 Copynumber: 7.9 Consensus size: 124
32998249 GCTTCGTTTA
** * *
32998259 TTTGATCTTCTTCTCTGTATCTCATCAAGAAGATGGGGGTTTGAAGTTTCACTCGCATTGAGCTT
1 TTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTT
* * * * * * * * *
32998324 CACTTTATTGTTTTGGTCAACTTCTTTGTATCTTATCAAGAAGATGACCAGTTTATTG-
66 CGCTTCATTGTTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGT
* *
32998382 TTTGACCCACTTCTCTGTATCTCATGAGGAAGAT-GGGGTTTGAAGTTTCACTCACATTGAGC-T
1 TTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTT
* * * * *
32998445 CTGCTTCGTTGATTTGGTCTATTTCTCTGTATCTCATCAGGAAGATGACTGCTTCATTTT
66 C-GCTTCATTGTTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGT
* * *
32998505 TTTGATCCACTTCTCTGTATCTCATTAGGAAGATGGGGGTTTGAAGTTTCACTCATATTAAGCTT
1 TTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTT
* * * * * *
32998570 CACTTCATTGTTTTGGTCTAGTTCTCTATATCTCATCTGAAACATGACTACTTCATTGT
66 CGCTTCATTGTTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGT
* * * * * * *
32998629 TTTAATCTACTTCTCTGTACCACATCAGGAAGATGGGGATTTGAAGTTTCACTCGCATTGAGCCT
1 TTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTT
* * * * * * *
32998694 CGGTTCATTATTTTGGTTTACTTCTCTATACCTCATTAGGAAGATGACCACTTCATTGT
66 CGCTTCATTGTTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGT
* * *
32998753 TTT-AACCTACTTCTCTGTATCTCATCAGGAAGAT-GGTGTTTGAAGTTCCACTCACATTGAGCT
1 TTTGATCC-ACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCT
* * * * *
32998816 CCGCTTCATTGATTTGGTCCACTGCTCTGTATCTCATCAGGAAGATGACTACTTCATTAT
65 TCGCTTCATTGTTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGT
* * * * * * * **
32998876 TTTCATCCACTTTTCTGGATCTTATCAGGAAGATGAGGGTTTAAAGTTTCATTTGCATTGAGCTT
1 TTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTT
* ** * *
32998941 CGCTTCATTATTTTGGTCTACTTCTCTGTATCTCATCAAAAAGATGACCACTTCATTAT
66 CGCTTCATTGTTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGT
* * * *
32999000 TTTGACCCACTTCTCTGTATCTCATGAGGAAGAT-GGGGTTCGAAGTTTCACTCACATTGAGCTC
1 TTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTT
** * * *
32999064 CGCTTTGTTGATTTGGTTTACTTCTCTGTATCTCATCAGGAAGATGACTACTTTATTGT
66 CGCTTCATTGTTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGT
* * *
32999123 TTTGATCCACTTCTCTATATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCGCATTGAGATT
1 TTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTT
* * *
32999188 CGCTTTATTATTTTGGTATACTTCTCTGTATCTCATCAGGAAGAT
66 CGCTTCATTGTTTTGGTCTACTTCTCTGTATCTCATCAGGAAGAT
32999233 AGGGTTTGAA
Statistics
Matches: 714, Mismatches: 129, Indels: 15
0.83 0.15 0.02
Matches are distributed among these distances:
121 2 0.00
122 70 0.10
123 264 0.37
124 376 0.53
125 2 0.00
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (124 bp):
TTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTT
CGCTTCATTGTTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGT
Found at i:32998870 original size:247 final size:246
Alignment explanation
Indices: 32998268--32999232 Score: 1193
Period size: 247 Copynumber: 3.9 Consensus size: 246
32998258 ATTTGATCTT
* * * *
32998268 CTTCTCTGTATCTCATCAAGAAGATGGGGGTTTGAAGTTTCACTCGCATTGAGCTTCACTTTATT
1 CTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTCCACTTCATT
* * * * * * * * *
32998333 GTTTTGGTCAACTTCTTTGTATCTTATCAAGAAGATGACCAGTTTATTG-TTTGACCCACTTCTC
66 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGTTTTGATCCACTTCTC
* * *
32998397 TGTATCTCATGAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAG-CTCTGCTTCGTTGA-TTT
131 TGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCGCATTGAGCCTC-GCTTCATT-ATTTT
* ** * *
32998460 GGTCTATTTCTCTGTATCTCATCAGGAAGATGACTGCTTCATTTTTTTGATCCA
194 GGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTATTTT-AACCA
* * * *
32998514 CTTCTCTGTATCTCATTAGGAAGATGGGGGTTTGAAGTTTCACTCATATTAAGCTTCACTTCATT
1 CTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTCCACTTCATT
* * * * * * * *
32998579 GTTTTGGTCTAGTTCTCTATATCTCATCTGAAACATGACTACTTCATTGTTTTAATCTACTTCTC
66 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGTTTTGATCCACTTCTC
* * *
32998644 TGTACCACATCAGGAAGATGGGGATTTGAAGTTTCACTCGCATTGAGCCTCGGTTCATTATTTTG
131 TGTATCTCATCAGGAAGATGGGG-TTTGAAGTTTCACTCGCATTGAGCCTCGCTTCATTATTTTG
* * * * *
32998709 GTTTACTTCTCTATACCTCATTAGGAAGATGACCACTTCATTGTTTTAACCTA
195 GTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTATTTTAACC-A
* * *
32998762 CTTCTCTGTATCTCATCAGGAAGAT-GGTGTTTGAAGTTCCACTCACATTGAGCTCCGCTTCATT
1 CTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTCCACTTCATT
* * * * *
32998826 GATTTGGTCCACTGCTCTGTATCTCATCAGGAAGATGACTACTTCATTATTTTCATCCACTTTTC
66 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGTTTTGATCCACTTCTC
* * * * * *
32998891 TGGATCTTATCAGGAAGATGAGGGTTTAAAGTTTCATTTGCATTGAGCTTCGCTTCATTATTTTG
131 TGTATCTCATCAGGAAGATG-GGGTTTGAAGTTTCACTCGCATTGAGCCTCGCTTCATTATTTTG
** *
32998956 GTCTACTTCTCTGTATCTCATCAAAAAGATGACCACTTCATTATTTTGACCCA
195 GTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTATTTT-AACCA
* * * **
32999009 CTTCTCTGTATCTCATGAGGAAGAT-GGGGTTCGAAGTTTCACTCACATTGAGCTCCGCTTTGTT
1 CTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTCCACTTCATT
* *
32999073 GATTTGGTTTACTTCTCTGTATCTCATCAGGAAGATGACTACTTTATTGTTTTGATCCACTTCTC
66 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGTTTTGATCCACTTCTC
* ** *
32999138 TATATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCGCATTGAGATTCGCTTTATTATTTTG
131 TGTATCTCATCAGGAAGAT-GGGGTTTGAAGTTTCACTCGCATTGAGCCTCGCTTCATTATTTTG
*
32999203 GTATACTTCTCTGTATCTCATCAGGAAGAT
195 GTCTACTTCTCTGTATCTCATCAGGAAGAT
32999233 AGGGTTTGAA
Statistics
Matches: 615, Mismatches: 96, Indels: 15
0.85 0.13 0.02
Matches are distributed among these distances:
246 96 0.16
247 413 0.67
248 103 0.17
249 3 0.00
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (246 bp):
CTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTCCACTTCATT
GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTGTTTTGATCCACTTCTC
TGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCGCATTGAGCCTCGCTTCATTATTTTGG
TCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTATTTTAACCA
Found at i:32998957 original size:371 final size:369
Alignment explanation
Indices: 32997746--32999232 Score: 1331
Period size: 371 Copynumber: 3.9 Consensus size: 369
32997736 TTATTTGGCT
** * * * * * **
32997746 CACTTCTCTATATCTCATCAAGAAGAT-AAGGTTTGAAGTTTCACTCGCATTGAGCTTTGCTTCA
1 CACTTCTCTGGATCTCATCAGGAAGATGAGGGTTTAAAGTTTCACTCACATTAAGCTTCACTTCA
* ** * * *
32997810 TTATTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTAACCCT-CTT
66 TTATTTTGGTCTACTTCTCTATATCTCATCAAAAACATGACCACTTCATTATTTTAA-TCTACTT
* * * * * * **
32997874 CTATGTATCTCATTAGAAAGATGGTGTTTGAAGTTTCAATCACATTGAG-CTCCGCTTCGTTGA-
130 CTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCGCATTGAGCCT-CGCTTTATT-AT
** *
32997937 TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCACTTCT-TTGTTTTAACCCACTTCTCT
193 TTTGGTTTACTTCTCTGTATCTCATCAGGAAGATGACCACTT-TATTGTTTTAA-CCACTTCTCT
* * * * * * * *
32998001 GTATCTCATCAAGAAGATAGGGTTTGAAGTTTCACACATATTAAGCTTCACTTCATT-ATTTTAG
256 GTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTCCGCTTCATTGA-TTTGG
* * * * * * *
32998065 TCTAGTTCTTTGTATCTCATTAGAAAGATGACTGCTTCATTGTTTTAATC
320 TCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTATTTTCATC
* * * * * ** * * *
32998115 CACTTTTTTGTACCTCATCAGAAAGATG-GGGATTTAAAGTTTCACTCGTATTAAGCCTCAATTT
1 CACTTCTCTGGATCTCATCAGGAAGATGAGGG-TTTAAAGTTTCACTCACATTAAGCTTCACTTC
* * * * * * *
32998179 ATTATTCTGGTCTACTTCTCTGTGTCTCATTAGAATGATTGGGCTTGAAGTTTCACTCACATTGA
65 ATTATTTTGGTCTACTTCTCTATATCTCATCA-AA--A----AC----A---TGAC-CAC-TTCA
* * * * * * **
32998244 GCTTCGCTTCGTTTATTTGATCTTCTTCTCTGTATC-TCATCAAGAAGATGGGGGTTTGAAGTTT
114 --TT--ATT--TTAATCT-A-CTTC-TCTGTATCTCATCA-GGA-A-GAT-GGGGTTTGAAGTTT
* * * ** * * *
32998308 CACTCGCATTGAGCTTCACTTTATTGTTTTGGTCAACTTCTTTGTATCTTATCAAGAAGATGACC
166 CACTCGCATTGAGCCTCGCTTTATTATTTTGGTTTACTTCTCTGTATCTCATCAGGAAGATGACC
* * * *
32998373 AGTTTATTGTTTGACCCACTTCTCTGTATCTCATGAGGAAGATGGGGTTTGAAGTTTCACTCACA
231 ACTTTATTGTTTTAACCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACA
* * * *
32998438 TTGAGCTCTGCTTCGTTGATTTGGTCTATTTCTCTGTATCTCATCAGGAAGATGACTGCTTCATT
296 TTGAGCTCCGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTACTTCATT
* *
32998503 TTTTTGATC
361 ATTTTCATC
* * * * *
32998512 CACTTCTCTGTATCTCATTAGGAAGATGGGGGTTTGAAGTTTCACTCATATTAAGCTTCACTTCA
1 CACTTCTCTGGATCTCATCAGGAAGATGAGGGTTTAAAGTTTCACTCACATTAAGCTTCACTTCA
* * ** * *
32998577 TTGTTTTGGTCTAGTTCTCTATATCTCATCTGAAACATGACTACTTCATTGTTTTAATCTACTTC
66 TTATTTTGGTCTACTTCTCTATATCTCATCAAAAACATGACCACTTCATTATTTTAATCTACTTC
* * * *
32998642 TCTGTACCACATCAGGAAGATGGGGATTTGAAGTTTCACTCGCATTGAGCCTCGGTTCATTATTT
131 TCTGTATCTCATCAGGAAGATGGGG-TTTGAAGTTTCACTCGCATTGAGCCTCGCTTTATTATTT
* * * *
32998707 TGGTTTACTTCTCTATACCTCATTAGGAAGATGACCACTTCATTGTTTTAACCTACTTCTCTGTA
195 TGGTTTACTTCTCTGTATCTCATCAGGAAGATGACCACTTTATTGTTTTAACC-ACTTCTCTGTA
* * *
32998772 TCTCATCAGGAAGATGGTGTTTGAAGTTCCACTCACATTGAGCTCCGCTTCATTGATTTGGTCCA
259 TCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTCCGCTTCATTGATTTGGTCTA
*
32998837 CTGCTCTGTATCTCATCAGGAAGATGACTACTTCATTATTTTCATC
324 CTTCTCTGTATCTCATCAGGAAGATGACTACTTCATTATTTTCATC
* * * ** * *
32998883 CACTTTTCTGGATCTTATCAGGAAGATGAGGGTTTAAAGTTTCATTTGCATTGAGCTTCGCTTCA
1 CACTTCTCTGGATCTCATCAGGAAGATGAGGGTTTAAAGTTTCACTCACATTAAGCTTCACTTCA
* * * * *
32998948 TTATTTTGGTCTACTTCTCTGTATCTCATCAAAAAGATGACCACTTCATTATTTTGACCCACTTC
66 TTATTTTGGTCTACTTCTCTATATCTCATCAAAAACATGACCACTTCATTATTTTAATCTACTTC
* * * *
32999013 TCTGTATCTCATGAGGAAGATGGGGTTCGAAGTTTCACTCACATTGAG-CTCCGCTTTGTTGA-T
131 TCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCGCATTGAGCCT-CGCTTTATT-ATT
* * *
32999076 TTGGTTTACTTCTCTGTATCTCATCAGGAAGATGACTACTTTATTGTTTTGATCCACTTCTCTAT
194 TTGGTTTACTTCTCTGTATCTCATCAGGAAGATGACCACTTTATTGTTTT-AACCACTTCTCTGT
* * * *
32999141 ATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCGCATTGAGATTCGCTTTATT-ATTTTGGT
258 ATCTCATCAGGAAGAT-GGGGTTTGAAGTTTCACTCACATTGAGCTCCGCTTCATTGA-TTTGGT
*
32999205 ATACTTCTCTGTATCTCATCAGGAAGAT
321 CTACTTCTCTGTATCTCATCAGGAAGAT
32999233 AGGGTTTGAA
Statistics
Matches: 899, Mismatches: 174, Indels: 88
0.77 0.15 0.08
Matches are distributed among these distances:
369 29 0.03
370 230 0.26
371 309 0.34
372 6 0.01
373 8 0.01
374 1 0.00
375 5 0.01
377 2 0.00
379 2 0.00
381 4 0.00
382 2 0.00
383 3 0.00
384 3 0.00
385 3 0.00
386 4 0.00
388 2 0.00
390 3 0.00
391 1 0.00
392 3 0.00
394 7 0.01
395 8 0.01
396 2 0.00
397 184 0.20
398 77 0.09
399 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (369 bp):
CACTTCTCTGGATCTCATCAGGAAGATGAGGGTTTAAAGTTTCACTCACATTAAGCTTCACTTCA
TTATTTTGGTCTACTTCTCTATATCTCATCAAAAACATGACCACTTCATTATTTTAATCTACTTC
TCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCGCATTGAGCCTCGCTTTATTATTTT
GGTTTACTTCTCTGTATCTCATCAGGAAGATGACCACTTTATTGTTTTAACCACTTCTCTGTATC
TCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTCCGCTTCATTGATTTGGTCTACT
TCTCTGTATCTCATCAGGAAGATGACTACTTCATTATTTTCATC
Found at i:32999285 original size:75 final size:76
Alignment explanation
Indices: 32999131--32999309 Score: 261
Period size: 75 Copynumber: 2.4 Consensus size: 76
32999121 GTTTTGATCC
* * * *
32999131 ACTTCTCTATATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCGCATTGAGATTCGCTTTAT
1 ACTTCTCTATATCTCATCAGGAAGATGAGGGTTTGAAGTTTCACTCGCATTGAGATTCACTTCAC
*
32999196 TATTTTGGTAT
66 TATTTTCGTAT
* *
32999207 ACTTCTCTGTATCTCATCAGGAAGAT-AGGGTTTGAAGTTTCACTCGCATTGAGCTTCACTTCAC
1 ACTTCTCTATATCTCATCAGGAAGATGAGGGTTTGAAGTTTCACTCGCATTGAGATTCACTTCAC
* *
32999271 TGTTTTCGTCT
66 TATTTTCGTAT
*
32999282 ACTTCTTTATATCTCATCAGGAAGATGA
1 ACTTCTCTATATCTCATCAGGAAGATGA
32999310 CCACTTCATT
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
75 65 0.71
76 26 0.29
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (76 bp):
ACTTCTCTATATCTCATCAGGAAGATGAGGGTTTGAAGTTTCACTCGCATTGAGATTCACTTCAC
TATTTTCGTAT
Found at i:32999728 original size:97 final size:97
Alignment explanation
Indices: 32999551--32999785 Score: 299
Period size: 97 Copynumber: 2.4 Consensus size: 97
32999541 TAGTCTGCTT
* * * * ** * ** * *
32999551 CATCTTTAGCGTATAAGATTCACCGTTACGGCCTCAATCTTTCCCTTCACATCTCTAAGGTATAA
1 CATCTCTAGGGTACAAGATTCACCGTTGCGGCCTCAATC-TGGCTTTCTTATTTCTAAAGTATAA
** *
32999616 GGTTCGCTGTTACGGCCTCGACCTTTCCCTTCA
65 GGTTCGCCATTACGGCCTCAACCTTTCCCTTCA
* * * *
32999649 CATCTTTAGGGTTCAAGATTCACTGTTGCGGCTTCAATCTGGCTTTCTTATTTCTAAAGTATAAG
1 CATCTCTAGGGTACAAGATTCACCGTTGCGGCCTCAATCTGGCTTTCTTATTTCTAAAGTATAAG
32999714 GTTCGCCATTACGGCCTCAACCTTTCCCTTCA
66 GTTCGCCATTACGGCCTCAACCTTTCCCTTCA
32999746 CATCTCTAGGGTACAAGATTCACCGTTGCGGCCTCAATCT
1 CATCTCTAGGGTACAAGATTCACCGTTGCGGCCTCAATCT
32999786 TTCCCTTCAC
Statistics
Matches: 117, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
97 84 0.72
98 33 0.28
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.34
Consensus pattern (97 bp):
CATCTCTAGGGTACAAGATTCACCGTTGCGGCCTCAATCTGGCTTTCTTATTTCTAAAGTATAAG
GTTCGCCATTACGGCCTCAACCTTTCCCTTCA
Found at i:32999804 original size:49 final size:49
Alignment explanation
Indices: 32999551--32999814 Score: 235
Period size: 49 Copynumber: 5.4 Consensus size: 49
32999541 TAGTCTGCTT
* * *
32999551 CATCTTTAGCGTATAAGATTCACCGTTACGGCCTCAATCTTTCCCTTCA
1 CATCTCTAGGGTACAAGATTCACCGTTACGGCCTCAATCTTTCCCTTCA
* * * * * * *
32999600 CATCTCTAAGGTATAAGGTTCGCTGTTACGGCCTCGACCTTTCCCTTCA
1 CATCTCTAGGGTACAAGATTCACCGTTACGGCCTCAATCTTTCCCTTCA
* * * * * ** * *
32999649 CATCTTTAGGGTTCAAGATTCACTGTTGCGGCTTCAATC-TGGCTTTCT
1 CATCTCTAGGGTACAAGATTCACCGTTACGGCCTCAATCTTTCCCTTCA
* * ** * * * * *
32999697 TATTTCTAAAGTATAAGGTTCGCCATTACGGCCTCAACCTTTCCCTTCA
1 CATCTCTAGGGTACAAGATTCACCGTTACGGCCTCAATCTTTCCCTTCA
*
32999746 CATCTCTAGGGTACAAGATTCACCGTTGCGGCCTCAATCTTTCCCTTCA
1 CATCTCTAGGGTACAAGATTCACCGTTACGGCCTCAATCTTTCCCTTCA
*
32999795 CAT-TCCTAGGGTACGAGATT
1 CATCT-CTAGGGTACAAGATT
32999815 AGAATGAGTT
Statistics
Matches: 162, Mismatches: 51, Indels: 4
0.75 0.24 0.02
Matches are distributed among these distances:
48 31 0.19
49 131 0.81
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (49 bp):
CATCTCTAGGGTACAAGATTCACCGTTACGGCCTCAATCTTTCCCTTCA
Found at i:33000530 original size:16 final size:15
Alignment explanation
Indices: 33000503--33000533 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
33000493 CATCTTGACC
33000503 TCTTTTTTTTCTTTT
1 TCTTTTTTTTCTTTT
33000518 TCTTTTCTTTTCTTTT
1 TCTTTT-TTTTCTTTT
33000534 CTCTCTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TCTTTTTTTTCTTTT
Found at i:33000535 original size:21 final size:20
Alignment explanation
Indices: 33000503--33000549 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
33000493 CATCTTGACC
* *
33000503 TCTTTTTTTTCTTTTTCTTT
1 TCTTTTTTTTCTCTCTCTTT
33000523 TCTTTTCTTTTCTCTCTCTTT
1 TCTTTT-TTTTCTCTCTCTTT
33000544 T-TTTTT
1 TCTTTTT
33000550 GGTAAAATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 10 0.42
21 13 0.54
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (20 bp):
TCTTTTTTTTCTCTCTCTTT
Found at i:33000542 original size:16 final size:16
Alignment explanation
Indices: 33000509--33000549 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
33000499 GACCTCTTTT
*
33000509 TTTTCTTTTTCTTTTC
1 TTTTCTTTTTCTTCTC
33000525 TTTTC-TTTTCTCTCTC
1 TTTTCTTTTTCT-TCTC
33000541 TTTT-TTTTT
1 TTTTCTTTTT
33000550 GGTAAAATGC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTCTTTTTCTTCTC
Found at i:33000549 original size:5 final size:5
Alignment explanation
Indices: 33000503--33000548 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
33000493 CATCTTGACC
*
33000503 TCTTT T-TTT TCTTTT TCTTT TCTTT TCTTT TCTCTC TCTTT T-TTT T
1 TCTTT TCTTT TC-TTT TCTTT TCTTT TCTTT TCT-TT TCTTT TCTTT T
33000549 TGGTAAAATG
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
4 8 0.22
5 19 0.53
6 9 0.25
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TCTTT
Found at i:33022316 original size:25 final size:25
Alignment explanation
Indices: 33022276--33022434 Score: 156
Period size: 25 Copynumber: 6.3 Consensus size: 25
33022266 TTTGACTCAA
* * *
33022276 ACGAGCCCAGACAGAATATCGCTCAT
1 ACGAG-CCAGATAGAATTTCGCTCTT
*
33022302 ACGAGCCAGATAGAATTACGCTCTT
1 ACGAGCCAGATAGAATTTCGCTCTT
* * * *
33022327 ACAAGCCAGACAGAGTTTCACTCTT
1 ACGAGCCAGATAGAATTTCGCTCTT
*
33022352 ACGAGCCAGATAGAATTTCTCTCTT
1 ACGAGCCAGATAGAATTTCGCTCTT
* *
33022377 AGGAGCCAGATAGAATTACGCTCTT
1 ACGAGCCAGATAGAATTTCGCTCTT
* * * * * *
33022402 ACAAGCTAGACAAAATTACCCTCTT
1 ACGAGCCAGATAGAATTTCGCTCTT
33022427 ACGAGCCA
1 ACGAGCCA
33022435 AAATCAGAAT
Statistics
Matches: 109, Mismatches: 24, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
25 104 0.95
26 5 0.05
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (25 bp):
ACGAGCCAGATAGAATTTCGCTCTT
Found at i:33022405 original size:75 final size:75
Alignment explanation
Indices: 33022276--33022434 Score: 219
Period size: 75 Copynumber: 2.1 Consensus size: 75
33022266 TTTGACTCAA
*
33022276 ACGAGCCCAGACAGAATATCGCTCATACGAGCCAGATAGAATTACGCTCTTACAAGCCAGACAGA
1 ACGAG-CCAGACAGAATATCGCTCATACGAGCCAGATAGAATTACGCTCTTACAAGCCAGACAAA
* *
33022341 GTTTCACTCTT
65 ATTACACTCTT
* * * * * *
33022352 ACGAGCCAGATAGAATTTCTCTCTTAGGAGCCAGATAGAATTACGCTCTTACAAGCTAGACAAAA
1 ACGAGCCAGACAGAATATCGCTCATACGAGCCAGATAGAATTACGCTCTTACAAGCCAGACAAAA
*
33022417 TTACCCTCTT
66 TTACACTCTT
33022427 ACGAGCCA
1 ACGAGCCA
33022435 AAATCAGAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
75 68 0.93
76 5 0.07
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (75 bp):
ACGAGCCAGACAGAATATCGCTCATACGAGCCAGATAGAATTACGCTCTTACAAGCCAGACAAAA
TTACACTCTT
Found at i:33035160 original size:25 final size:25
Alignment explanation
Indices: 33035132--33035249 Score: 94
Period size: 25 Copynumber: 4.7 Consensus size: 25
33035122 AGCTAGACAG
*
33035132 AATTACGCTCTTACAAGCCAAACAA
1 AATTACGCTCTTACGAGCCAAACAA
** * * *
33035157 AATTTTGCTCTTATGAGCCAGACAG
1 AATTACGCTCTTACGAGCCAAACAA
* * * * * *
33035182 AATTTCGATCTTATGAGTCAGACAG
1 AATTACGCTCTTACGAGCCAAACAA
*
33035207 AATTACGCTCTTACGAGCTAGAA-AA
1 AATTACGCTCTTACGAGCCA-AACAA
*
33035232 AATTACGCTCTAACGAGC
1 AATTACGCTCTTACGAGC
33035250 TAGAATAAGA
Statistics
Matches: 75, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
25 74 0.99
26 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (25 bp):
AATTACGCTCTTACGAGCCAAACAA
Found at i:33035250 original size:25 final size:25
Alignment explanation
Indices: 33035207--33035254 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
33035197 AGTCAGACAG
*
33035207 AATTACGCTCTTACGAGCTAGAAAA
1 AATTACGCTCTAACGAGCTAGAAAA
33035232 AATTACGCTCTAACGAGCTAGAA
1 AATTACGCTCTAACGAGCTAGAA
33035255 TAAGAATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (25 bp):
AATTACGCTCTAACGAGCTAGAAAA
Found at i:33043220 original size:38 final size:38
Alignment explanation
Indices: 33043177--33043260 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 38
33043167 ATTTTCGGAA
33043177 TGCATCCAAG-ACTACCGCTGCATAAATATTCTTCAAAT
1 TGCATCCAAGAACTACCGCTGCATAAATATTCTTC-AAT
* ** *
33043215 TGCATCC-TGAACTATTGCTGCATAAGTATTCTTCAAT
1 TGCATCCAAGAACTACCGCTGCATAAATATTCTTCAAT
33043252 TGCA-CCAAG
1 TGCATCCAAG
33043261 GAATATCATT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
36 2 0.05
37 9 0.23
38 28 0.72
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (38 bp):
TGCATCCAAGAACTACCGCTGCATAAATATTCTTCAAT
Found at i:33046630 original size:26 final size:26
Alignment explanation
Indices: 33046594--33046651 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
33046584 TCATAACGAT
*
33046594 AATTTTGAACAAGTTCCTGCAGCGAC
1 AATTCTGAACAAGTTCCTGCAGCGAC
*
33046620 AATTCTGAACAAGTTCTTGCAGCGAC
1 AATTCTGAACAAGTTCCTGCAGCGAC
33046646 AATTCT
1 AATTCT
33046652 AGGCGCAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29
Consensus pattern (26 bp):
AATTCTGAACAAGTTCCTGCAGCGAC
Found at i:33047765 original size:13 final size:12
Alignment explanation
Indices: 33047747--33047779 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
33047737 GGTATGCATG
33047747 AAAAACTAAAACT
1 AAAAACTAAAA-T
33047760 AAAAACTAAAAT
1 AAAAACTAAAAT
33047772 -AAAACTAA
1 AAAAACTAA
33047780 CTCAATTGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
12 1 0.05
13 11 0.55
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAACTAAAAT
Found at i:33052704 original size:24 final size:25
Alignment explanation
Indices: 33052677--33052724 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
33052667 TGTAAAAACT
*
33052677 AAAGA-AACAAATTAA-AGTAAAATA
1 AAAGACAA-AAATTAATAGAAAAATA
33052701 AAAGACAAAAATTAATAGAAAAAT
1 AAAGACAAAAATTAATAGAAAAAT
33052725 TGCAATGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.71, C:0.04, G:0.08, T:0.17
Consensus pattern (25 bp):
AAAGACAAAAATTAATAGAAAAATA
Found at i:33060908 original size:34 final size:34
Alignment explanation
Indices: 33060855--33060961 Score: 103
Period size: 34 Copynumber: 3.2 Consensus size: 34
33060845 TTCAAAAAAA
* * *
33060855 AGTCAACGATCAA-AGTCAACGGTCAATAGT-AAT
1 AGTCAAAGATCAATGGTCAACGGTCAA-AGTCAAC
* *
33060888 AGTCAAAGGTTAATGGTCAACGGTCAAAGTCAAC
1 AGTCAAAGATCAATGGTCAACGGTCAAAGTCAAC
* *
33060922 AGTCAACGATCAATGGTCAA-GGTCAACGATCAAC
1 AGTCAAAGATCAATGGTCAACGGTCAAAG-TCAAC
*
33060956 GGTCAA
1 AGTCAA
33060962 TGGTAAAAGT
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
33 20 0.33
34 41 0.67
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (34 bp):
AGTCAAAGATCAATGGTCAACGGTCAAAGTCAAC
Found at i:33060914 original size:7 final size:7
Alignment explanation
Indices: 33060902--33060961 Score: 61
Period size: 7 Copynumber: 8.9 Consensus size: 7
33060892 AAAGGTTAAT
33060902 GGTCAAC
1 GGTCAAC
33060909 GGTCAA-
1 GGTCAAC
*
33060915 AGTCAAC
1 GGTCAAC
*
33060922 AGTCAAC
1 GGTCAAC
* *
33060929 GATCAAT
1 GGTCAAC
33060936 GGTCAA-
1 GGTCAAC
33060942 GGTCAAC
1 GGTCAAC
*
33060949 GATCAAC
1 GGTCAAC
33060956 GGTCAA
1 GGTCAA
33060962 TGGTAAAAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
6 11 0.25
7 33 0.75
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (7 bp):
GGTCAAC
Found at i:33060934 original size:27 final size:27
Alignment explanation
Indices: 33060904--33060976 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
33060894 AGGTTAATGG
*
33060904 TCAACGGTCAAAGTCAAC-AGTCAACGA
1 TCAATGGTCAAAGTCAACGA-TCAACGA
* *
33060931 TCAATGGTCAAGGTCAACGATCAACGG
1 TCAATGGTCAAAGTCAACGATCAACGA
*
33060958 TCAATGGTAAAAGTCAACG
1 TCAATGGTCAAAGTCAACG
33060977 GCCGGTCAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 39 0.98
28 1 0.03
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (27 bp):
TCAATGGTCAAAGTCAACGATCAACGA
Found at i:33060946 original size:20 final size:20
Alignment explanation
Indices: 33060923--33060990 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
33060913 AAAGTCAACA
*
33060923 GTCAACGATCAATGGTCAAG
1 GTCAACGATCAACGGTCAAG
33060943 GTCAACGATCAACGGTCAATG
1 GTCAACGATCAACGGTCAA-G
* * *
33060964 GTAAAAG-TCAACGG-C-CG
1 GTCAACGATCAACGGTCAAG
33060981 GTCAACGATC
1 GTCAACGATC
33060991 GATCACGGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
17 6 0.15
18 2 0.05
19 1 0.03
20 25 0.62
21 6 0.15
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.18
Consensus pattern (20 bp):
GTCAACGATCAACGGTCAAG
Found at i:33073787 original size:26 final size:26
Alignment explanation
Indices: 33073739--33073792 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
33073729 GCGATATTTT
* * *
33073739 TGAACAAGTTCCTGCAGCGACAATTC
1 TGAACAAGTTCCTACAACAACAATTC
*
33073765 TGAACAAGTTCTTACAACAACAATTC
1 TGAACAAGTTCCTACAACAACAATTC
33073791 TG
1 TG
33073793 GGTGCAATGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (26 bp):
TGAACAAGTTCCTACAACAACAATTC
Found at i:33094966 original size:5 final size:5
Alignment explanation
Indices: 33094952--33094990 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
33094942 ATACAAAAAA
*
33094952 TAAA- TAAAT TAAAT TAAAT TAAAT TAAA- TAAAT AAAAT T
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT T
33094991 GTATCTATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
4 8 0.26
5 23 0.74
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
TAAAT
Found at i:33104665 original size:21 final size:20
Alignment explanation
Indices: 33104640--33104697 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
33104630 GGCAAAAAAA
33104640 AAATAACATAAAATAACAAAT
1 AAATAACATAAAATAAC-AAT
*
33104661 AAATAAAATACATAA-AACAAT
1 AAATAACATA-A-AATAACAAT
* *
33104682 GAATAACATTAAATAA
1 AAATAACATAAAATAA
33104698 AAGCAAGAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
19 2 0.07
20 3 0.10
21 19 0.63
22 4 0.13
23 2 0.07
ACGTcount: A:0.69, C:0.09, G:0.02, T:0.21
Consensus pattern (20 bp):
AAATAACATAAAATAACAAT
Found at i:33104686 original size:25 final size:26
Alignment explanation
Indices: 33104639--33104696 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
33104629 AGGCAAAAAA
*
33104639 AAAATAACATAAAATAACAAATAA-AT
1 AAAAT-ACATAAAACAACAAATAACAT
**
33104665 AAAATACATAAAACAATGAATAACAT
1 AAAATACATAAAACAACAAATAACAT
*
33104691 TAAATA
1 AAAATA
33104697 AAAGCAAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.69, C:0.09, G:0.02, T:0.21
Consensus pattern (26 bp):
AAAATACATAAAACAACAAATAACAT
Found at i:33104762 original size:15 final size:15
Alignment explanation
Indices: 33104709--33104766 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
33104699 AGCAAGAACG
*
33104709 TAAATAACAAATAAA
1 TAAATAATAAATAAA
* *
33104724 TGAATAACAAATAAA
1 TAAATAATAAATAAA
*
33104739 TAATTAATAAATAAA
1 TAAATAATAAATAAA
*
33104754 TAAACAATAAATA
1 TAAATAATAAATA
33104767 TATGAAGTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.24
Consensus pattern (15 bp):
TAAATAATAAATAAA
Found at i:33104957 original size:16 final size:17
Alignment explanation
Indices: 33104936--33104977 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
33104926 AAGAGATAAT
* *
33104936 AATAAAATGACATGA-A
1 AATAAAATAACAAGATA
33104952 AAT-AAATAACAAGATA
1 AATAAAATAACAAGATA
33104968 AATAAAATAA
1 AATAAAATAA
33104978 ATAATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 9 0.41
16 7 0.32
17 6 0.27
ACGTcount: A:0.69, C:0.05, G:0.07, T:0.19
Consensus pattern (17 bp):
AATAAAATAACAAGATA
Done.