Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 113 of 143
Found at i:34423172 original size:27 final size:27
Alignment explanation
Indices: 34423134--34423186 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
34423124 TTCATTTTTC
34423134 TTGAAGTACCTGTGTCCAACGTATATA
1 TTGAAGTACCTGTGTCCAACGTATATA
* *
34423161 TTGACGTACCTGTGTCCAATGTATAT
1 TTGAAGTACCTGTGTCCAACGTATAT
34423187 TTAGACATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
TTGAAGTACCTGTGTCCAACGTATATA
Found at i:34427827 original size:13 final size:13
Alignment explanation
Indices: 34427809--34427873 Score: 69
Period size: 13 Copynumber: 5.0 Consensus size: 13
34427799 AGTTTAGTAT
*
34427809 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
34427822 TGCTTTTAAAAAA
1 TGCTTTTGAAAAG
34427835 TGC-TTTGAAAAAG
1 TGCTTTTG-AAAAG
*
34427848 TGATTTTGAAAAG
1 TGCTTTTGAAAAG
*
34427861 TACTTTTGAAAAG
1 TGCTTTTGAAAAG
34427874 CTTGAGTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
12 3 0.07
13 35 0.83
14 4 0.10
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:34429109 original size:20 final size:20
Alignment explanation
Indices: 34429028--34429110 Score: 80
Period size: 20 Copynumber: 4.2 Consensus size: 20
34429018 AATCCCAAAT
* *
34429028 TTTGAAGTTTAAGGTTTGGA-
1 TTTGAGGTTTAA-GTTTAGAG
* *
34429048 TTTGAGATTTAAAGTTTAGGG
1 TTTGAGGTTT-AAGTTTAGAG
*
34429069 TTTGA-GTTTAAGTTTTGAG
1 TTTGAGGTTTAAGTTTAGAG
*
34429088 TTTGAGGTTTAAGTTTAAAG
1 TTTGAGGTTTAAGTTTAGAG
34429108 TTT
1 TTT
34429111 AAGGGTTTGG
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
19 13 0.25
20 31 0.61
21 7 0.14
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (20 bp):
TTTGAGGTTTAAGTTTAGAG
Found at i:34429934 original size:17 final size:19
Alignment explanation
Indices: 34429912--34429953 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
34429902 ACACAATATG
34429912 AAAATAATAGAA-TATAA-
1 AAAATAATAGAATTATAAC
*
34429929 AAAATAATATAATTATAAC
1 AAAATAATAGAATTATAAC
34429948 AAAATA
1 AAAATA
34429954 TAAATATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.50
18 5 0.23
19 6 0.27
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (19 bp):
AAAATAATAGAATTATAAC
Found at i:34429951 original size:20 final size:19
Alignment explanation
Indices: 34429912--34429966 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 19
34429902 ACACAATATG
*
34429912 AAAATAATAGAA-TAT-AA
1 AAAATAATATAATTATAAA
34429929 AAAATAATATAATTATAACA
1 AAAATAATATAATTATAA-A
*
34429949 AAATATAA-ATATTTATAA
1 AAA-ATAATATAATTATAA
34429967 TTATATTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 11 0.34
18 3 0.09
19 1 0.03
20 13 0.41
21 4 0.12
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAATAATATAATTATAAA
Found at i:34431977 original size:54 final size:54
Alignment explanation
Indices: 34431919--34432098 Score: 335
Period size: 54 Copynumber: 3.3 Consensus size: 54
34431909 TGCTGTAGGA
34431919 GGCTTTGCAA-TAGGACCAGGAGCCAGAGCAGGAACTGGAGATGATCCTGTGGGT
1 GGCTTTGCAACT-GGACCAGGAGCCAGAGCAGGAACTGGAGATGATCCTGTGGGT
34431973 GGCTTTGCAACTGGACCAGGAGCCAGAGCAGGAACTGGAGATGATCCTGTGGGT
1 GGCTTTGCAACTGGACCAGGAGCCAGAGCAGGAACTGGAGATGATCCTGTGGGT
*
34432027 GGCTTTGCAACTGGACCAGGAGCCAGGGCAGGAACTGGAGATGATCCTGTGGGT
1 GGCTTTGCAACTGGACCAGGAGCCAGAGCAGGAACTGGAGATGATCCTGTGGGT
34432081 GGCTTTGCAACTGGACCA
1 GGCTTTGCAACTGGACCA
34432099 TGGTGGTTGG
Statistics
Matches: 124, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
54 123 0.99
55 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.37, T:0.19
Consensus pattern (54 bp):
GGCTTTGCAACTGGACCAGGAGCCAGAGCAGGAACTGGAGATGATCCTGTGGGT
Found at i:34434960 original size:17 final size:17
Alignment explanation
Indices: 34434938--34434971 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
34434928 CGCATAATAT
34434938 AATAAACATATTTAAAA
1 AATAAACATATTTAAAA
* *
34434955 AATAAATATTTTTAAAA
1 AATAAACATATTTAAAA
34434972 TTTTAATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (17 bp):
AATAAACATATTTAAAA
Found at i:34437861 original size:41 final size:40
Alignment explanation
Indices: 34437786--34437877 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 40
34437776 ATATAACCAT
* *
34437786 AAAAAATATTATACACATGGTAGACAAATGATATACGAAC
1 AAAAAAAATTATACACATGGTAGACAAATAATATACGAAC
*
34437826 AAAAAAAATTACTA-ACATTGTAGACAAACTAATATACGAAC
1 AAAAAAAATTA-TACACATGGTAGACAAA-TAATATACGAAC
34437867 -AAAAAAATTAT
1 AAAAAAAATTAT
34437878 TCGAAAAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
39 1 0.02
40 33 0.70
41 13 0.28
ACGTcount: A:0.57, C:0.12, G:0.09, T:0.23
Consensus pattern (40 bp):
AAAAAAAATTATACACATGGTAGACAAATAATATACGAAC
Found at i:34438001 original size:21 final size:22
Alignment explanation
Indices: 34437976--34438017 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
34437966 AAACAACAAT
34437976 TGATTTA-CGAATACCAAAAAA
1 TGATTTATCGAATACCAAAAAA
34437997 TGATTTATCGAATACCAAAAA
1 TGATTTATCGAATACCAAAAA
34438018 TTACAAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.50, C:0.14, G:0.10, T:0.26
Consensus pattern (22 bp):
TGATTTATCGAATACCAAAAAA
Found at i:34438907 original size:37 final size:37
Alignment explanation
Indices: 34438866--34438988 Score: 119
Period size: 38 Copynumber: 3.3 Consensus size: 37
34438856 CAAACAGATT
*
34438866 AATTTTGAAACCGTATTAAAAAAAATATGTACAAATA
1 AATTTTGAAACAGTATTAAAAAAAATATGTACAAATA
*
34438903 AATTTTGAAA-AGAATATTAAACAAAATATG-A-AATGATA
1 AATTTTGAAACAG--TATTAAAAAAAATATGTACAA--ATA
* * *
34438941 AATTTTGAAACAATATTAAATAAAAA-ATACTACAGATA
1 AATTTTGAAACAGTATTAAA-AAAAATAT-GTACAAATA
34438979 AATTTTGAAA
1 AATTTTGAAA
34438989 AAAAAGATCA
Statistics
Matches: 71, Mismatches: 6, Indels: 17
0.76 0.06 0.18
Matches are distributed among these distances:
36 3 0.04
37 20 0.28
38 45 0.63
39 2 0.03
40 1 0.01
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30
Consensus pattern (37 bp):
AATTTTGAAACAGTATTAAAAAAAATATGTACAAATA
Found at i:34438929 original size:38 final size:38
Alignment explanation
Indices: 34438879--34439008 Score: 122
Period size: 38 Copynumber: 3.4 Consensus size: 38
34438869 TTTGAAACCG
* *
34438879 TATTAAAAAAAATATGTACAAATAAATTTTGAAAAGAA
1 TATTAAACAAAATATGTACAAATAAATTTTGAAAAAAA
*
34438917 TATTAAACAAAATATG-A-AATGATAAATTTTG-AAACAA
1 TATTAAACAAAATATGTACAA--ATAAATTTTGAAAAAAA
* * * *
34438954 TATTAAATAAAAAATACTACAGATAAATTTTGAAAAAAAA
1 TATTAAACAAAATAT-GTACAAATAAATTTTG-AAAAAAA
* *
34438994 GATCAAACAAAATAT
1 TATTAAACAAAATAT
34439009 AAACTACTAA
Statistics
Matches: 74, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
36 2 0.03
37 19 0.26
38 35 0.47
39 1 0.01
40 17 0.23
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (38 bp):
TATTAAACAAAATATGTACAAATAAATTTTGAAAAAAA
Found at i:34439008 original size:77 final size:76
Alignment explanation
Indices: 34438866--34439061 Score: 229
Period size: 77 Copynumber: 2.6 Consensus size: 76
34438856 CAAACAGATT
** * * * *
34438866 AATTTTGAAACCGTATT-AA-AAAAAATATGTACAAATAAATTTTGAAAAGAATATTAAACAAAA
1 AATTTTGAAACAATATTAAATAAAAAATA-CTACAAATAAATTTTGAAAAAAAGATCAAACAAAA
34438929 TATGAAA-TGA-TA
65 TAT-AAACT-ACTA
*
34438941 AATTTTGAAACAATATTAAATAAAAAATACTACAGATAAATTTTGAAAAAAAAGATCAAACAAAA
1 AATTTTGAAACAATATTAAATAAAAAATACTACAAATAAATTTTG-AAAAAAAGATCAAACAAAA
34439006 TATAAACTACTA
65 TATAAACTACTA
* * *
34439018 ACTTTTGAAACAAGAGTAAATAAAAAATACGTACAAATAAATTT
1 AATTTTGAAACAATATTAAATAAAAAATAC-TACAAATAAATTT
34439062 AAAATTTTTT
Statistics
Matches: 104, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
75 15 0.14
76 20 0.19
77 57 0.55
78 12 0.12
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.28
Consensus pattern (76 bp):
AATTTTGAAACAATATTAAATAAAAAATACTACAAATAAATTTTGAAAAAAAGATCAAACAAAAT
ATAAACTACTA
Found at i:34441895 original size:26 final size:25
Alignment explanation
Indices: 34441865--34441913 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
34441855 AGGTCTACCC
34441865 ATATTAATTTTTAATTTT-TTTTAAAA
1 ATATTAA-TTTT-ATTTTATTTTAAAA
*
34441891 ATATTTATTTTATTTTATTTTAA
1 ATATTAATTTTATTTTATTTTAA
34441914 CATTTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 10 0.48
26 6 0.29
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (25 bp):
ATATTAATTTTATTTTATTTTAAAA
Found at i:34442505 original size:26 final size:26
Alignment explanation
Indices: 34442460--34442523 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 26
34442450 ATATTGACCC
* *
34442460 AATTCAAATTTAATTTAAA-TAGTAAAA
1 AATT-AAAATTAAATTAAATTA-TAAAA
34442487 AATTAAAATTAAATTAAATTATAAAA
1 AATTAAAATTAAATTAAATTATAAAA
34442513 ATATATAAAAT
1 A-AT-TAAAAT
34442524 ATCAACAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 18 0.56
27 8 0.25
28 6 0.19
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (26 bp):
AATTAAAATTAAATTAAATTATAAAA
Found at i:34446728 original size:20 final size:21
Alignment explanation
Indices: 34446692--34446734 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
34446682 GTGAATTTTG
34446692 TTTATTTTTGAAAAATA-TAA
1 TTTATTTTTGAAAAATATTAA
*
34446712 TTTA-TTTTGTAATAATATTAA
1 TTTATTTTTG-AAAAATATTAA
34446733 TT
1 TT
34446735 AAAAATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 5 0.25
20 10 0.50
21 5 0.25
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (21 bp):
TTTATTTTTGAAAAATATTAA
Found at i:34450394 original size:12 final size:12
Alignment explanation
Indices: 34450373--34450404 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
34450363 ATGTATTAGA
34450373 TTATTATTATTG
1 TTATTATTATTG
*
34450385 TTATTGTTATTG
1 TTATTATTATTG
34450397 TTATTATT
1 TTATTATT
34450405 TAGGGAGCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (12 bp):
TTATTATTATTG
Found at i:34451428 original size:8 final size:8
Alignment explanation
Indices: 34451365--34451511 Score: 66
Period size: 8 Copynumber: 16.5 Consensus size: 8
34451355 TTTTTTCACA
34451365 AAAATTATT
1 AAAATTA-T
*
34451374 AAAAATCAT
1 -AAAATTAT
*
34451383 AAAATCAT
1 AAAATTAT
34451391 AAAA-TATT
1 AAAATTA-T
34451399 AAATATTAGT
1 AAA-ATTA-T
* *
34451409 AATATAAT
1 AAAATTAT
34451417 AAAATTAT
1 AAAATTAT
34451425 AAAATTTGAT
1 AAAA-TT-AT
34451435 ATAAACTTATT
1 A-AAA-TTA-T
*
34451446 AAAACTAT
1 AAAATTAT
34451454 AAAATTAT
1 AAAATTAT
34451462 AAAATCTA-
1 AAAAT-TAT
34451470 ATAAATCTA-
1 A-AAAT-TAT
34451479 ATAAATTAT
1 A-AAATTAT
34451488 AAATAAATTAT
1 --A-AAATTAT
34451499 AAAATTAAT
1 AAAATT-AT
34451508 AAAA
1 AAAA
34451512 ACTTATTTAA
Statistics
Matches: 114, Mismatches: 10, Indels: 27
0.75 0.07 0.18
Matches are distributed among these distances:
7 1 0.01
8 48 0.42
9 31 0.27
10 18 0.16
11 16 0.14
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (8 bp):
AAAATTAT
Found at i:34451456 original size:17 final size:16
Alignment explanation
Indices: 34451365--34451465 Score: 53
Period size: 18 Copynumber: 5.8 Consensus size: 16
34451355 TTTTTTCACA
*
34451365 AAAATTATTAAAAATCAT
1 AAAATTA-TAAAACT-AT
*
34451383 AAAATCATAAAA-TATT
1 AAAATTATAAAACTA-T
*
34451399 AAATATTAGTAATA-TAAT
1 AAA-ATTA-TAAAACT-AT
*
34451417 AAAATTATAAAATTTGAT
1 AAAATTATAAAA-CT-AT
34451435 ATAAACTTATTAAAACTAT
1 A-AAA-TTA-TAAAACTAT
34451454 AAAATTATAAAA
1 AAAATTATAAAA
34451466 TCTAATAAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 20
0.72 0.06 0.21
Matches are distributed among these distances:
15 1 0.01
16 14 0.21
17 15 0.22
18 22 0.32
19 7 0.10
20 4 0.06
21 5 0.07
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (16 bp):
AAAATTATAAAACTAT
Found at i:34451894 original size:22 final size:20
Alignment explanation
Indices: 34451864--34451908 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
34451854 CCAATTCAAT
*
34451864 AAAATAAAACATTAAAAGAAA
1 AAAATAAAAAATTAAAA-AAA
34451885 AAAATTAAAAAATTAAAAAAA
1 AAAA-TAAAAAATTAAAAAAA
34451906 AAA
1 AAA
34451909 TTGGTTAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (20 bp):
AAAATAAAAAATTAAAAAAA
Found at i:34457495 original size:36 final size:39
Alignment explanation
Indices: 34457455--34457526 Score: 105
Period size: 36 Copynumber: 1.9 Consensus size: 39
34457445 TTAACTTGAC
34457455 GATGAACATCGATTAACT-A-AAA-AAATTGCCAAAGAA
1 GATGAACATCGATTAACTAAGAAAGAAATTGCCAAAGAA
* *
34457491 GATGAATATTGATTAACTAAGAAAGAAATTGCCAAA
1 GATGAACATCGATTAACTAAGAAAGAAATTGCCAAA
34457527 AACCTCAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 16 0.52
37 1 0.03
38 3 0.10
39 11 0.35
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.22
Consensus pattern (39 bp):
GATGAACATCGATTAACTAAGAAAGAAATTGCCAAAGAA
Found at i:34461678 original size:18 final size:19
Alignment explanation
Indices: 34461655--34461690 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
34461645 TTCTAAAAAC
34461655 ATAAAT-TTTGGAATTTTT
1 ATAAATATTTGGAATTTTT
*
34461673 ATAAATATTTTGAATTTT
1 ATAAATATTTGGAATTTT
34461691 AAAAATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (19 bp):
ATAAATATTTGGAATTTTT
Found at i:34461696 original size:18 final size:20
Alignment explanation
Indices: 34461659--34461696 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
34461649 AAAAACATAA
*
34461659 ATTTTGGAATTTTTATAAAT
1 ATTTTGGAATTTTTAAAAAT
34461679 ATTTT-GAA-TTTTAAAAAT
1 ATTTTGGAATTTTTAAAAAT
34461697 TAATTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 3 0.18
20 5 0.29
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (20 bp):
ATTTTGGAATTTTTAAAAAT
Found at i:34471750 original size:25 final size:25
Alignment explanation
Indices: 34471699--34471775 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
34471689 CACTAGCGCG
* *
34471699 CTCTCTGATTAGCACTGTGTGTGCT
1 CTCTCTTATTAGCACTGTCTGTGCT
*
34471724 CTCT-GT-TTAGCAC-GTCTCGTGCT
1 CTCTCTTATTAGCACTGTCT-GTGCT
* *
34471747 CTCTGTTATTAGCACTGTGTGTGCT
1 CTCTCTTATTAGCACTGTCTGTGCT
34471772 CTCT
1 CTCT
34471776 GATCAGTACT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
22 3 0.07
23 16 0.37
24 1 0.02
25 20 0.47
26 3 0.07
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.42
Consensus pattern (25 bp):
CTCTCTTATTAGCACTGTCTGTGCT
Found at i:34471807 original size:46 final size:46
Alignment explanation
Indices: 34471699--34471868 Score: 209
Period size: 46 Copynumber: 3.7 Consensus size: 46
34471689 CACTAGCGCG
* * * * *
34471699 CTCTCTGATTAGCACTGTGTGTGCTCTCTGTTTAGCACGTCTCGTG--
1 CTCTCTGTTTAGCACTGTGTGTGCTCTCTGATCAGTAC-T-TTGTGTA
34471745 CTCTCTGTTATTAGCACTGTGTGTGCTCTCTGATCAGTACTTTGTGTA
1 CTCTCTG-T-TTAGCACTGTGTGTGCTCTCTGATCAGTACTTTGTGTA
* *
34471793 CTCTCTGTTTAGCACTTTGTGTGATCTCTGATCAGTACTTTGTGTA
1 CTCTCTGTTTAGCACTGTGTGTGCTCTCTGATCAGTACTTTGTGTA
* *
34471839 CTCTTTGTTTAGCACTTTGTGTGCTCTCTG
1 CTCTCTGTTTAGCACTGTGTGTGCTCTCTG
34471869 TTGCCCAGCA
Statistics
Matches: 111, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
46 75 0.68
47 2 0.02
48 34 0.31
ACGTcount: A:0.12, C:0.22, G:0.21, T:0.44
Consensus pattern (46 bp):
CTCTCTGTTTAGCACTGTGTGTGCTCTCTGATCAGTACTTTGTGTA
Found at i:34471870 original size:23 final size:23
Alignment explanation
Indices: 34471698--34471918 Score: 178
Period size: 23 Copynumber: 9.5 Consensus size: 23
34471688 ACACTAGCGC
* *
34471698 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGTTTAGCACTTTGTGT
* *
34471721 GCTCTCTGTTTAGCACGTCT-CGT
1 GCTCTCTGTTTAGCAC-TTTGTGT
*
34471744 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG-T-TTAGCACTTTGTGT
* * *
34471769 GCTCTCTGATCAGTACTTTGTGT
1 GCTCTCTGTTTAGCACTTTGTGT
*
34471792 ACTCTCTGTTTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACTTTGTGT
* * * *
34471815 GATCTCTGATCAGTACTTTGTGT
1 GCTCTCTGTTTAGCACTTTGTGT
* *
34471838 ACTCTTTGTTTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACTTTGTGT
* *
34471861 GCTCTCTGTTGCCCAGCAC-TTATGT
1 GCTCTCTGTT---TAGCACTTTGTGT
* * *
34471886 GCTCTCTGTTCAGTACTTCG-GT
1 GCTCTCTGTTTAGCACTTTGTGT
*
34471908 ACTCTCTGTTT
1 GCTCTCTGTTT
34471919 GTTCCGTTTA
Statistics
Matches: 157, Mismatches: 33, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
22 16 0.10
23 99 0.63
24 5 0.03
25 32 0.20
26 5 0.03
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (23 bp):
GCTCTCTGTTTAGCACTTTGTGT
Found at i:34474175 original size:5 final size:5
Alignment explanation
Indices: 34474161--34474221 Score: 52
Period size: 5 Copynumber: 12.0 Consensus size: 5
34474151 CGTGAAACTT
* * * * *
34474161 TTAAA TTAAAA TAAAA ATAAA TTAAA TTAAA TTATAA -AAAA TCAAA TTTAA
1 TTAAA TT-AAA TTAAA TTAAA TTAAA TTAAA TTA-AA TTAAA TTAAA TTAAA
34474212 TTAAA TTAAA
1 TTAAA TTAAA
34474222 ACTTTTCAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
4 2 0.05
5 36 0.82
6 6 0.14
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (5 bp):
TTAAA
Found at i:34474207 original size:25 final size:23
Alignment explanation
Indices: 34474161--34474219 Score: 77
Period size: 25 Copynumber: 2.6 Consensus size: 23
34474151 CGTGAAACTT
34474161 TTAAATTAAA--ATAAAAATAAA
1 TTAAATTAAATTATAAAAATAAA
34474182 TTAAATTAAATTATAAAAAATCAAA
1 TTAAATTAAATTAT-AAAAAT-AAA
*
34474207 TTTAATTAAATTA
1 TTAAATTAAATTA
34474220 AAACTTTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
21 10 0.30
23 2 0.06
24 6 0.18
25 15 0.45
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
TTAAATTAAATTATAAAAATAAA
Found at i:34480938 original size:15 final size:15
Alignment explanation
Indices: 34480918--34480952 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
34480908 TTTGTTTGAG
*
34480918 AATAATTATGTCCAA
1 AATAATTATATCCAA
*
34480933 AATAATTATATTCAA
1 AATAATTATATCCAA
34480948 AATAA
1 AATAA
34480953 GGTTTTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (15 bp):
AATAATTATATCCAA
Found at i:34484661 original size:2 final size:2
Alignment explanation
Indices: 34484654--34484678 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
34484644 CAATATTATT
34484654 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
34484679 GTTTTAGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:34488882 original size:18 final size:17
Alignment explanation
Indices: 34488857--34488895 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 17
34488847 ATCATGATTA
34488857 AAAAAAAATGACATGACACC
1 AAAAAAAA--ACATGAC-CC
34488877 AAAAAAAAACATGACCC
1 AAAAAAAAACATGACCC
34488894 AA
1 AA
34488896 TACGAATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 7 0.37
20 8 0.42
ACGTcount: A:0.64, C:0.21, G:0.08, T:0.08
Consensus pattern (17 bp):
AAAAAAAAACATGACCC
Found at i:34501730 original size:31 final size:31
Alignment explanation
Indices: 34501695--34501753 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
34501685 ACCTAAAGAC
*
34501695 TTAAATAAAAACTTTCAAATAGTTTAATTAT
1 TTAAATAAAAACTTTCAAATAATTTAATTAT
* *
34501726 TTAAATGAAAACTTTCGAATAATTTAAT
1 TTAAATAAAAACTTTCAAATAATTTAAT
34501754 AATTATTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (31 bp):
TTAAATAAAAACTTTCAAATAATTTAATTAT
Found at i:34503565 original size:27 final size:27
Alignment explanation
Indices: 34503527--34503580 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
34503517 TTTCTTGAAA
* *
34503527 GTACCTGTGTCCAATGTATATGTAGAC
1 GTACCTGTGTCCAATATATATATAGAC
*
34503554 GTACTTGTGTCCAATATATATATAGAC
1 GTACCTGTGTCCAATATATATATAGAC
34503581 ATCGCTATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (27 bp):
GTACCTGTGTCCAATATATATATAGAC
Found at i:34514997 original size:75 final size:73
Alignment explanation
Indices: 34514886--34515025 Score: 210
Period size: 75 Copynumber: 1.9 Consensus size: 73
34514876 TTTAATTAAA
*
34514886 AAATAATTTTACTGAGAAAATAATAAATAGCATTTGGCCAGAAAGATAATTACTAATTAAAAACA
1 AAATAATTTTACTAAGAAAATAATAAATAGCATTTGGCCAGAAAGATAATTACTAATTAAAAACA
34514951 TGCATTAG
66 TGCATTAG
* * *
34514959 AAATAATTTT-CTTAAGAAAAATAAATAAATAGCATTTGGTCAGAATGATAATTATTAATTAAAA
1 AAATAATTTTAC-TAAG-AAAAT-AATAAATAGCATTTGGCCAGAAAGATAATTACTAATTAAAA
34515023 ACA
63 ACA
34515026 GGCAATCCGT
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
72 1 0.02
73 13 0.22
74 5 0.08
75 41 0.68
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.31
Consensus pattern (73 bp):
AAATAATTTTACTAAGAAAATAATAAATAGCATTTGGCCAGAAAGATAATTACTAATTAAAAACA
TGCATTAG
Found at i:34522368 original size:14 final size:14
Alignment explanation
Indices: 34522349--34522381 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
34522339 TTATGTGTTC
*
34522349 TATTTATTTTTAAT
1 TATTTATCTTTAAT
34522363 TATTTATCTTTAAT
1 TATTTATCTTTAAT
34522377 T-TTTA
1 TATTTA
34522382 AATCCTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (14 bp):
TATTTATCTTTAAT
Found at i:34524391 original size:23 final size:21
Alignment explanation
Indices: 34524365--34524407 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
34524355 TTTAAAATTT
*
34524365 AAAAATTTAAGAATTATTTTTTG
1 AAAAA-TTAA-AAATATTTTTTG
34524388 AAAAATTAAAAATATTTTTT
1 AAAAATTAAAAATATTTTTT
34524408 AATTTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 4 0.21
23 5 0.26
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (21 bp):
AAAAATTAAAAATATTTTTTG
Found at i:34524580 original size:20 final size:21
Alignment explanation
Indices: 34524536--34524581 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
34524526 AATACAAATT
**
34524536 TAAAAATTTAAAAAAAAAGGG
1 TAAAAATTTAAAAAAAAAGAC
*
34524557 TAAAAATTT-AAAAGAAAGAC
1 TAAAAATTTAAAAAAAAAGAC
34524577 TAAAA
1 TAAAA
34524582 TAATTTTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.67, C:0.02, G:0.11, T:0.20
Consensus pattern (21 bp):
TAAAAATTTAAAAAAAAAGAC
Found at i:34531072 original size:3 final size:3
Alignment explanation
Indices: 34531061--34531091 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
34531051 TATACTACTA
34531061 ATT ATTT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT
34531092 CACACATTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:34535394 original size:12 final size:12
Alignment explanation
Indices: 34535377--34535401 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34535367 AGAATACTCC
34535377 CTTCCTAGTGCA
1 CTTCCTAGTGCA
34535389 CTTCCTAGTGCA
1 CTTCCTAGTGCA
34535401 C
1 C
34535402 AACCCTGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.36, G:0.16, T:0.32
Consensus pattern (12 bp):
CTTCCTAGTGCA
Found at i:34539388 original size:18 final size:17
Alignment explanation
Indices: 34539364--34539403 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
34539354 AATTGTAAAA
*
34539364 AAAATATTAAAATATAT
1 AAAATATTAAAAAATAT
34539381 AGAAATATTAAAAAATAT
1 A-AAATATTAAAAAATAT
34539399 AAAAT
1 AAAAT
34539404 TAAATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (17 bp):
AAAATATTAAAAAATAT
Found at i:34539505 original size:21 final size:21
Alignment explanation
Indices: 34539480--34539527 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
34539470 ATAAAAGCAT
34539480 TAAATAT-TAATTAAAATAATA
1 TAAATATATAATTAAAA-AATA
**
34539501 TAAATATATTTTTAAAAAATA
1 TAAATATATAATTAAAAAATA
34539522 TAAATA
1 TAAATA
34539528 ATATGGGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATATATAATTAAAAAATA
Found at i:34546101 original size:23 final size:22
Alignment explanation
Indices: 34546075--34546118 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
34546065 TTGCCTTTTA
*
34546075 ATTTCCTTTATTTTTTAAATTAG
1 ATTTACTTT-TTTTTTAAATTAG
* *
34546098 ATTTAGTTTTTTTTTCAATTA
1 ATTTACTTTTTTTTTAAATTA
34546119 AAGGGAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.25, C:0.07, G:0.05, T:0.64
Consensus pattern (22 bp):
ATTTACTTTTTTTTTAAATTAG
Found at i:34547449 original size:30 final size:30
Alignment explanation
Indices: 34547413--34547470 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
34547403 TTAGTAAAAG
34547413 TAAAATTGT-ACTTTAATCTCTTAAAAATGA
1 TAAAATTGTGA-TTTAATCTCTTAAAAATGA
* *
34547443 TAAAATTTTGATTTAATCTTTTAAAAAT
1 TAAAATTGTGATTTAATCTCTTAAAAAT
34547471 TACATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (30 bp):
TAAAATTGTGATTTAATCTCTTAAAAATGA
Found at i:34550040 original size:3 final size:3
Alignment explanation
Indices: 34550032--34550063 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
34550022 TCACTATTCA
34550032 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
34550064 ATTTAAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:34567180 original size:18 final size:18
Alignment explanation
Indices: 34567147--34567181 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
34567137 TTAATTAGAA
* *
34567147 AAATTAATTTATATAATT
1 AAATTAATTAAGATAATT
34567165 AAATTAATTAAGATAAT
1 AAATTAATTAAGATAAT
34567182 ATTTATTCTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
AAATTAATTAAGATAATT
Found at i:34567963 original size:63 final size:63
Alignment explanation
Indices: 34567863--34568012 Score: 176
Period size: 63 Copynumber: 2.4 Consensus size: 63
34567853 TTGGAGAAGT
* ** * **
34567863 TGTCGGTGCATGGAATGATTGCGCGTATTGTGGTGCTTGTGAAAAATAAA-TCGATGATGGTTG
1 TGTCGGTGCAAGGAATGATTGCGCGTATTGTAATGCTTATGAAAAATAAACT-GATGATGAATG
* * ** *
34567926 TGTCGGCGCAAGGAATGATTGCGCGTGTTGTAATGCTTATGTGAAATAAACTGGTGATGAATG
1 TGTCGGTGCAAGGAATGATTGCGCGTATTGTAATGCTTATGAAAAATAAACTGATGATGAATG
*
34567989 TGTCGATGCAAGGAATGATTGCGC
1 TGTCGGTGCAAGGAATGATTGCGC
34568013 ATGCAGTGGT
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
63 72 0.99
64 1 0.01
ACGTcount: A:0.25, C:0.11, G:0.33, T:0.31
Consensus pattern (63 bp):
TGTCGGTGCAAGGAATGATTGCGCGTATTGTAATGCTTATGAAAAATAAACTGATGATGAATG
Found at i:34568128 original size:63 final size:63
Alignment explanation
Indices: 34567959--34568129 Score: 184
Period size: 63 Copynumber: 2.7 Consensus size: 63
34567949 CGTGTTGTAA
* * * * *
34567959 TGCTTATGTGAAATAAACTGGTGATGAATGTGTCGATGCAAGGAATGATTGCGCATGCAGTGG
1 TGCTTATGTGAAATAAACTGGTGTTGTATGTGTTGATGCAGGGAATGATTGCACATGCAGTGG
* * * * *
34568022 TGCCTCTATGAAATAAAGTGGTGATTGT-TGTGTTGGTGCAGGGAATGATTGCACATG-ATGTGG
1 TGCTTATGTGAAATAAACTGGTG-TTGTATGTGTTGATGCAGGGAATGATTGCACATGCA-GTGG
* * * *
34568085 TGCTTGTGTAAAATAAATTGGTGTTGTATGTGTTGATGTAGGGAA
1 TGCTTATGTGAAATAAACTGGTGTTGTATGTGTTGATGCAGGGAA
34568130 CAATTGTGTG
Statistics
Matches: 88, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
62 5 0.06
63 81 0.92
64 2 0.02
ACGTcount: A:0.26, C:0.08, G:0.32, T:0.33
Consensus pattern (63 bp):
TGCTTATGTGAAATAAACTGGTGTTGTATGTGTTGATGCAGGGAATGATTGCACATGCAGTGG
Found at i:34570444 original size:17 final size:19
Alignment explanation
Indices: 34570424--34570466 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
34570414 CTCTTTCTGG
34570424 CTCTTTC-TCTCA-ATTTT
1 CTCTTTCTTCTCATATTTT
* *
34570441 CTCTATCTTCTCATGTTTT
1 CTCTTTCTTCTCATATTTT
34570460 CTCTTTC
1 CTCTTTC
34570467 GTTTCTCTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 6 0.29
18 5 0.24
19 10 0.48
ACGTcount: A:0.09, C:0.30, G:0.02, T:0.58
Consensus pattern (19 bp):
CTCTTTCTTCTCATATTTT
Found at i:34580461 original size:24 final size:24
Alignment explanation
Indices: 34580429--34580489 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
34580419 TTTAACGTTC
*
34580429 ACGAACATGTTCATTTAACA-TTAA
1 ACGAACATGTTCA-TGAACATTTAA
34580453 ACGAACATGTTCATGAACATTTAA
1 ACGAACATGTTCATGAACATTTAA
**
34580477 TTGAACATGTTCA
1 ACGAACATGTTCA
34580490 CAAGCAATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 5 0.15
24 28 0.85
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.33
Consensus pattern (24 bp):
ACGAACATGTTCATGAACATTTAA
Found at i:34580634 original size:24 final size:23
Alignment explanation
Indices: 34580583--34580635 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 23
34580573 ATCATTAATA
* *
34580583 AATAAATGAGTCATAAACGAGTC
1 AATAAATAAGTCATAAACGAGCC
*
34580606 AATAAATAAGCTCATAAATGAGCC
1 AATAAATAAG-TCATAAACGAGCC
*
34580630 TATAAA
1 AATAAA
34580636 CGAGCTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.51, C:0.13, G:0.13, T:0.23
Consensus pattern (23 bp):
AATAAATAAGTCATAAACGAGCC
Found at i:34581143 original size:9 final size:9
Alignment explanation
Indices: 34581129--34581171 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
34581119 TAGGTTATAG
*
34581129 AAAATTGTT
1 AAAATTATT
*
34581138 AAAATTATA
1 AAAATTATT
34581147 AAAATTATT
1 AAAATTATT
*
34581156 AAAAATTAAT
1 -AAAATTATT
34581166 AAAATT
1 AAAATT
34581172 TTATAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 21 0.72
10 8 0.28
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (9 bp):
AAAATTATT
Found at i:34581160 original size:10 final size:10
Alignment explanation
Indices: 34581129--34581169 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
34581119 TAGGTTATAG
*
34581129 AAAATTGTT-
1 AAAATTATTA
34581138 AAAATTA-TA
1 AAAATTATTA
34581147 AAAATTATTA
1 AAAATTATTA
*
34581157 AAAATTAATA
1 AAAATTATTA
34581167 AAA
1 AAA
34581170 TTTTATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 1 0.04
9 13 0.46
10 14 0.50
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (10 bp):
AAAATTATTA
Found at i:34581160 original size:19 final size:18
Alignment explanation
Indices: 34581129--34581211 Score: 82
Period size: 19 Copynumber: 4.6 Consensus size: 18
34581119 TAGGTTATAG
*
34581129 AAAATTGTT-AAAATTATA
1 AAAATTATTAAAAATTA-A
34581147 AAAATTATTAAAAATTAA
1 AAAATTATTAAAAATTAA
34581165 TAAAATT-TTATAAAA-TAA
1 -AAAATTATTA-AAAATTAA
* *
34581183 AAAATTCTTAAAATATCAA
1 AAAATTATTAAAA-ATTAA
34581202 AAAATTATTA
1 AAAATTATTA
34581212 TATATATATA
Statistics
Matches: 56, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
17 9 0.16
18 19 0.34
19 28 0.50
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.36
Consensus pattern (18 bp):
AAAATTATTAAAAATTAA
Found at i:34581218 original size:20 final size:19
Alignment explanation
Indices: 34581129--34581211 Score: 70
Period size: 18 Copynumber: 4.5 Consensus size: 19
34581119 TAGGTTATAG
*
34581129 AAAATTGTTAAAAT-T-ATA
1 AAAATTATTAAAATATCA-A
*
34581147 AAAATTATTAAAA-ATTAA
1 AAAATTATTAAAATATCAA
34581165 TAAAATT-TTATAAA-AT-AA
1 -AAAATTATTA-AAATATCAA
*
34581183 AAAATTCTTAAAATATCAA
1 AAAATTATTAAAATATCAA
34581202 AAAATTATTA
1 AAAATTATTA
34581212 TATATATATA
Statistics
Matches: 56, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
17 9 0.16
18 24 0.43
19 23 0.41
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.36
Consensus pattern (19 bp):
AAAATTATTAAAATATCAA
Found at i:34589879 original size:31 final size:31
Alignment explanation
Indices: 34589844--34589921 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
34589834 CATAAAACAT
* *
34589844 TTTAAA-AACTTAAATATAATTATAAATGCTA
1 TTTAAATAA-TTAAATATAATGATAAATGATA
*
34589875 TTTAAATAATTTAATATAATGATAAATGATA
1 TTTAAATAATTAAATATAATGATAAATGATA
*
34589906 TTTAAATAATTTAATA
1 TTTAAATAATTAAATA
34589922 CAATAATACA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 41 0.95
32 2 0.05
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (31 bp):
TTTAAATAATTAAATATAATGATAAATGATA
Found at i:34590942 original size:34 final size:33
Alignment explanation
Indices: 34590890--34590968 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 33
34590880 TGGTACCTAA
** *
34590890 ACATTTTTTGGTCCAATTTGGTA-TTCAAACTTG
1 ACATTTTTTTTTCCAATTTGGTACCT-AAACTTG
*
34590923 ACATTTTTTTTTCCTAATTTTGTACCTAAACTTG
1 ACATTTTTTTTTCC-AATTTGGTACCTAAACTTG
34590957 ACATTTTTTTTT
1 ACATTTTTTTTT
34590969 AAGTTGATAC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
33 12 0.30
34 27 0.68
35 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.09, T:0.53
Consensus pattern (33 bp):
ACATTTTTTTTTCCAATTTGGTACCTAAACTTG
Found at i:34591023 original size:92 final size:92
Alignment explanation
Indices: 34590847--34591041 Score: 229
Period size: 93 Copynumber: 2.1 Consensus size: 92
34590837 TTAATATAAT
* * * * *
34590847 ATTTGGTACCTAGACTTGACATTTTTTTTAATTTGGTACCTAAACATTTTTTGGTCCAATTTGGT
1 ATTTGGTACCTAAACTTGACATTTTTTTTAAGTTGATACCTAAACATTTTTGGGTCCAATTTGAT
*
34590912 ATTCAAACTTGACATTTTTTTTTCCTA
66 ACTCAAACTTGACATTTTTTTTTCCTA
* *
34590939 ATTTTGTACCTAAACTTGACATTTTTTTTTAAGTTGATACTTAAAC-TTTTTGGGGTCCAATTTG
1 ATTTGGTACCTAAACTTGACA-TTTTTTTTAAGTTGATACCTAAACATTTTT-GGGTCCAATTTG
* * *
34591003 ATAC-CTGAACTTGAC--TTTTTTCT-GTA
64 ATACTC-AAACTTGACATTTTTTTTTCCTA
34591029 ATTTGGTACCTAA
1 ATTTGGTACCTAA
34591042 TTTTTTATAA
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
90 14 0.16
91 7 0.08
92 25 0.28
93 42 0.48
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.48
Consensus pattern (92 bp):
ATTTGGTACCTAAACTTGACATTTTTTTTAAGTTGATACCTAAACATTTTTGGGTCCAATTTGAT
ACTCAAACTTGACATTTTTTTTTCCTA
Found at i:34591628 original size:30 final size:30
Alignment explanation
Indices: 34591594--34591655 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
34591584 ACTTATTTTA
*
34591594 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTATTATTATTTTAGAGGCAT
*
34591624 TTGTTAATTTTATTATTATTTTAGAGGTAT
1 TTGTTAATTTTATTATTATTTTAGAGGCAT
34591654 TT
1 TT
34591656 ATTTGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.02, G:0.15, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAGAGGCAT
Found at i:34592211 original size:21 final size:20
Alignment explanation
Indices: 34592187--34592245 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 20
34592177 TTTATATTGT
34592187 TGTTTTGGTACTGTTTTTTAC
1 TGTTTTGGTA-TGTTTTTTAC
*
34592208 TGTTTTGGTATTTTTTTTAC
1 TGTTTTGGTATGTTTTTTAC
*
34592228 TATTTTGGT-TGTTGTTTT
1 TGTTTTGGTATGTT-TTTT
34592246 GTTACTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.09
20 21 0.62
21 10 0.29
ACGTcount: A:0.08, C:0.05, G:0.19, T:0.68
Consensus pattern (20 bp):
TGTTTTGGTATGTTTTTTAC
Found at i:34592281 original size:35 final size:35
Alignment explanation
Indices: 34592242--34592337 Score: 106
Period size: 35 Copynumber: 2.7 Consensus size: 35
34592232 TTGGTTGTTG
*
34592242 TTTTGTTACTTTTTTTATTG-T-TTTGATGCTATTAT
1 TTTTGTTACTGTTTTT-TTGCTATTT-ATGCTATTAT
* * *
34592277 TTTTGTTACTGTTTTTTTGCTATTTTTGTTGTTAT
1 TTTTGTTACTGTTTTTTTGCTATTTATGCTATTAT
*
34592312 TTTTGTTACTGTTTTTGTTACTATTT
1 TTTTGTTACTGTTTTT-TTGCTATTT
34592338 TTATTATTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
34 3 0.06
35 39 0.74
36 11 0.21
ACGTcount: A:0.11, C:0.06, G:0.12, T:0.70
Consensus pattern (35 bp):
TTTTGTTACTGTTTTTTTGCTATTTATGCTATTAT
Found at i:34592289 original size:26 final size:25
Alignment explanation
Indices: 34592251--34592310 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
34592241 GTTTTGTTAC
*
34592251 TTTTT-TTATTGTTTTGATGCTATT
1 TTTTTGTTACTGTTTTGATGCTATT
**
34592275 ATTTTTGTTACTGTTTTTTTGCTATT
1 -TTTTTGTTACTGTTTTGATGCTATT
34592301 TTTGTTGTTA
1 TTT-TTGTTA
34592311 TTTTTGTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 8 0.27
26 22 0.73
ACGTcount: A:0.12, C:0.05, G:0.13, T:0.70
Consensus pattern (25 bp):
TTTTTGTTACTGTTTTGATGCTATT
Found at i:34592303 original size:12 final size:12
Alignment explanation
Indices: 34592274--34592339 Score: 71
Period size: 12 Copynumber: 5.6 Consensus size: 12
34592264 TTGATGCTAT
*
34592274 TATTTTTGTTAC
1 TATTTTTGTTGC
*
34592286 TGTTTTT-TTGC
1 TATTTTTGTTGC
*
34592297 TATTTTTGTTGT
1 TATTTTTGTTGC
*
34592309 TATTTTTGTTAC
1 TATTTTTGTTGC
* *
34592321 TGTTTTTGTTAC
1 TATTTTTGTTGC
34592333 TATTTTT
1 TATTTTT
34592340 ATTATTTTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
11 9 0.20
12 36 0.80
ACGTcount: A:0.11, C:0.06, G:0.12, T:0.71
Consensus pattern (12 bp):
TATTTTTGTTGC
Found at i:34592353 original size:35 final size:33
Alignment explanation
Indices: 34592271--34592353 Score: 96
Period size: 35 Copynumber: 2.4 Consensus size: 33
34592261 GTTTTGATGC
*
34592271 TATTA-TTTTTGTTACTGTTTTTTTGCTATTTT
1 TATTATTTTTTGTTACTGTTTTTTTACTATTTT
* *
34592303 TGTTGTTATTTTTGTTACTGTTTTTGTTACTATTTT
1 TATT-AT-TTTTTGTTACTGTTTTT-TTACTATTTT
34592339 TATTATTTTGTTGTT
1 TATTATTTT-TTGTT
34592354 GTTTTGCTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
32 3 0.07
34 3 0.07
35 23 0.56
36 12 0.29
ACGTcount: A:0.12, C:0.05, G:0.12, T:0.71
Consensus pattern (33 bp):
TATTATTTTTTGTTACTGTTTTTTTACTATTTT
Found at i:34593252 original size:5 final size:5
Alignment explanation
Indices: 34593242--34593266 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
34593232 AATAAAAAAT
34593242 ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA
34593267 TATTTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:34599891 original size:29 final size:30
Alignment explanation
Indices: 34599859--34599917 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
34599849 TATGGTTTAA
34599859 TGTGTAATTGTATACAT-AAATTATGATTT
1 TGTGTAATTGTATACATGAAATTATGATTT
* *
34599888 TGTGTAATTTTATACATGAAATTTTGATTT
1 TGTGTAATTGTATACATGAAATTATGATTT
34599918 GATCCTATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.32, C:0.03, G:0.14, T:0.51
Consensus pattern (30 bp):
TGTGTAATTGTATACATGAAATTATGATTT
Found at i:34613169 original size:49 final size:49
Alignment explanation
Indices: 34613096--34613190 Score: 163
Period size: 49 Copynumber: 1.9 Consensus size: 49
34613086 AGGTTTAGCT
* *
34613096 CGGACGAGTAACCTAACACGAACATATGTTCAGCTCAGACGAGCAAGCC
1 CGGACGAGTAACCTAACACAAACATATGTTCAACTCAGACGAGCAAGCC
*
34613145 CGGACGGGTAACCTAACACAAACATATGTTCAACTCAGACGAGCAA
1 CGGACGAGTAACCTAACACAAACATATGTTCAACTCAGACGAGCAA
34613191 CAGTTGTGGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.37, C:0.27, G:0.21, T:0.15
Consensus pattern (49 bp):
CGGACGAGTAACCTAACACAAACATATGTTCAACTCAGACGAGCAAGCC
Found at i:34614796 original size:15 final size:15
Alignment explanation
Indices: 34614772--34614812 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
34614762 TTATATTATT
*
34614772 TTAATAATTAATTAA
1 TTAATTATTAATTAA
*
34614787 TTAATTATTAATTAT
1 TTAATTATTAATTAA
34614802 TTATATTATTA
1 TTA-ATTATTA
34614813 TTTTTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTAATTATTAATTAA
Found at i:34614800 original size:19 final size:19
Alignment explanation
Indices: 34614761--34614814 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
34614751 TATTTTATCG
*
34614761 ATTATATTATTTTAATAATTA
1 ATTATATTA--TTATTAATTA
34614782 ATTA-ATTAATTATTAATTA
1 ATTATATT-ATTATTAATTA
*
34614801 TTTATATTATTATT
1 ATTATATTATTATT
34614815 TTTTTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 18 0.62
20 6 0.21
21 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTATATTATTATTAATTA
Found at i:34617095 original size:12 final size:12
Alignment explanation
Indices: 34617080--34617104 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34617070 GAAAGTTCAA
34617080 AAGAAAAAGAAT
1 AAGAAAAAGAAT
34617092 AAGAAAAAGAAT
1 AAGAAAAAGAAT
34617104 A
1 A
34617105 TGAGTGAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAGAAAAAGAAT
Found at i:34626415 original size:16 final size:18
Alignment explanation
Indices: 34626389--34626421 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
34626379 TTGATTTAAA
34626389 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
34626406 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
34626422 CCTAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:34640060 original size:34 final size:34
Alignment explanation
Indices: 34640010--34640081 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 34
34640000 ACCGAGTCTG
*
34640010 AGTAACATAGGCTATTAAGATAGCTTGAGATGGA
1 AGTAACATAGGCTATTAAGATAGCTTGAGATGAA
* * *
34640044 AGTAACATGGGTTATTAAGATAGCTTGAGGTGAA
1 AGTAACATAGGCTATTAAGATAGCTTGAGATGAA
34640078 AGTA
1 AGTA
34640082 CTTAATTTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.07, G:0.28, T:0.28
Consensus pattern (34 bp):
AGTAACATAGGCTATTAAGATAGCTTGAGATGAA
Found at i:34647494 original size:20 final size:20
Alignment explanation
Indices: 34647431--34647487 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
34647421 TCACGTCAGT
*
34647431 AAATAATTTTAAAATTATTA
1 AAATTATTTTAAAATTATTA
* *
34647451 AAATTATTTTTTAAAGTA-TA
1 AAATTA-TTTTAAAATTATTA
34647471 AAATTA--TTAAAATTATT
1 AAATTATTTTAAAATTATT
34647488 TTAAAATGTC
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
17 7 0.23
18 1 0.03
20 13 0.43
21 9 0.30
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
AAATTATTTTAAAATTATTA
Found at i:34651968 original size:16 final size:16
Alignment explanation
Indices: 34651943--34651994 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
34651933 TGATTCATTG
*
34651943 TAATGGAATAAAATTA
1 TAATGAAATAAAATTA
* * *
34651959 TAATGTAATAGAGA-TG
1 TAATGAAATA-AAATTA
34651975 TAATGAAATAAAATTA
1 TAATGAAATAAAATTA
34651991 TAAT
1 TAAT
34651995 TAGTAATTCA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
15 2 0.07
16 24 0.86
17 2 0.07
ACGTcount: A:0.54, C:0.00, G:0.13, T:0.33
Consensus pattern (16 bp):
TAATGAAATAAAATTA
Found at i:34652190 original size:15 final size:15
Alignment explanation
Indices: 34652170--34652254 Score: 63
Period size: 14 Copynumber: 5.8 Consensus size: 15
34652160 ATAAAATTAC
34652170 AATTAAATATAATTT
1 AATTAAATATAATTT
* **
34652185 AATTAAAAATAATAAAC
1 AATTAAATATAAT--TT
*
34652202 AATTTAATCATAATTT
1 AATTAAAT-ATAATTT
*
34652218 AATT--ATATTA-TT
1 AATTAAATATAATTT
34652230 -ATTAAATATAATTT
1 AATTAAATATAATTT
34652244 AA-TAAATATAA
1 AATTAAATATAA
34652255 AAATATAATT
Statistics
Matches: 54, Mismatches: 9, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
11 3 0.06
12 2 0.04
13 8 0.15
14 13 0.24
15 13 0.24
16 4 0.07
17 6 0.11
18 5 0.09
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
AATTAAATATAATTT
Found at i:34652265 original size:59 final size:59
Alignment explanation
Indices: 34652171--34652321 Score: 175
Period size: 59 Copynumber: 2.5 Consensus size: 59
34652161 TAAAATTACA
* * *
34652171 ATTAAATATAATTTAATTAAAAATAATAA-ACAATTTAATCATA-ATTTAATTA-TATTATT
1 ATTAAATATAATTTAA-T-AAAATAAAAATATAATTTAATCATATATTTAA-TACAATTATT
* *
34652230 ATTAAATATAATTTAATAAATATAAAAATATAATTTAATGATATTTTTAATACAATTATT
1 ATTAAATATAATTTAATAAA-ATAAAAATATAATTTAATCATATATTTAATACAATTATT
34652290 ATTAAAATATGAA-TTAATAAAATAAAAATATA
1 ATT-AAATAT-AATTTAATAAAATAAAAATATA
34652322 TAATATTAAT
Statistics
Matches: 81, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
57 3 0.04
58 7 0.09
59 30 0.37
60 25 0.31
61 14 0.17
62 2 0.02
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (59 bp):
ATTAAATATAATTTAATAAAATAAAAATATAATTTAATCATATATTTAATACAATTATT
Found at i:34655934 original size:23 final size:23
Alignment explanation
Indices: 34655834--34655957 Score: 85
Period size: 23 Copynumber: 5.3 Consensus size: 23
34655824 CGAAGTACTT
* *
34655834 AACAGTAAGCACACAAGTGTTGGGGA
1 AACAGTAGGCACACAAG-G-T-GCGA
34655860 AACAGTAGGCACACACA-GTGC-A
1 AACAGTAGGCACACA-AGGTGCGA
* * * *
34655882 ATCAGTAGGCGCACATAGCT--TA
1 AACAGTAGGCACACA-AGGTGCGA
*
34655904 AATAAGTAGGCACACAAGGTGCGA
1 AA-CAGTAGGCACACAAGGTGCGA
* *
34655928 AACAGTAAGCACACAAAGTGCGA
1 AACAGTAGGCACACAAGGTGCGA
34655951 AACAGTA
1 AACAGTA
34655958 AGCGCGTTAG
Statistics
Matches: 78, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
22 20 0.26
23 38 0.49
24 4 0.05
25 1 0.01
26 14 0.18
27 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.25, T:0.14
Consensus pattern (23 bp):
AACAGTAGGCACACAAGGTGCGA
Found at i:34655958 original size:23 final size:23
Alignment explanation
Indices: 34655908--34655960 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
34655898 AGCTTAAATA
* *
34655908 AGTAGGCACACAAGGTGCGAAAC
1 AGTAAGCACACAAAGTGCGAAAC
34655931 AGTAAGCACACAAAGTGCGAAAC
1 AGTAAGCACACAAAGTGCGAAAC
34655954 AGTAAGC
1 AGTAAGC
34655961 GCGTTAGCGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.43, C:0.21, G:0.26, T:0.09
Consensus pattern (23 bp):
AGTAAGCACACAAAGTGCGAAAC
Found at i:34669599 original size:17 final size:18
Alignment explanation
Indices: 34669567--34669601 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
34669557 TTGACATTGA
34669567 TTATATGACACACCATAT
1 TTATATGACACACCATAT
*
34669585 TTATA-GACGCACCATAT
1 TTATATGACACACCATAT
34669602 AATGAAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (18 bp):
TTATATGACACACCATAT
Found at i:34670952 original size:22 final size:22
Alignment explanation
Indices: 34670927--34670978 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
34670917 ACCAATACAA
34670927 AACCCATATCCCTAAAACACAT
1 AACCCATATCCCTAAAACACAT
*
34670949 AACCCATATCCCTAAAATACAT
1 AACCCATATCCCTAAAACACAT
*
34670971 AATCCATA
1 AACCCATA
34670979 ATCTTGAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (22 bp):
AACCCATATCCCTAAAACACAT
Found at i:34670999 original size:21 final size:21
Alignment explanation
Indices: 34670974--34671014 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
34670964 AATACATAAT
* *
34670974 CCATAATCTTGAACCCTAAAA
1 CCATAATCTTAAACACTAAAA
34670995 CCATAATCTTAAACACTAAA
1 CCATAATCTTAAACACTAAA
34671015 TTTTAAAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.27, G:0.02, T:0.24
Consensus pattern (21 bp):
CCATAATCTTAAACACTAAAA
Found at i:34671049 original size:7 final size:7
Alignment explanation
Indices: 34671028--34671097 Score: 68
Period size: 7 Copynumber: 9.6 Consensus size: 7
34671018 TAAAACTCAT
*
34671028 AACCCTA
1 AACCTTA
*
34671035 AACATTA
1 AACCTTA
34671042 AACCTTA
1 AACCTTA
**
34671049 AAATTTAA
1 AACCTT-A
34671057 AACCTTA
1 AACCTTA
*
34671064 AACCCTA
1 AACCTTA
34671071 AACTCTTA
1 AAC-CTTA
34671079 AACCTTA
1 AACCTTA
34671086 AACTCTTA
1 AAC-CTTA
34671094 AACC
1 AACC
34671098 CAAATCTCAA
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
7 33 0.65
8 18 0.35
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (7 bp):
AACCTTA
Found at i:34671049 original size:29 final size:28
Alignment explanation
Indices: 34670985--34671051 Score: 71
Period size: 29 Copynumber: 2.4 Consensus size: 28
34670975 CATAATCTTG
* * *
34670985 AACCCTAAAACCATAATCTTAAACACTA
1 AACCTTAAAACCATAACCCTAAACACTA
** *
34671013 AATTTTAAAACTCATAACCCTAAACATTA
1 AACCTTAAAAC-CATAACCCTAAACACTA
34671042 AACCTTAAAA
1 AACCTTAAAA
34671052 TTTAAAACCT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
28 8 0.27
29 22 0.73
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (28 bp):
AACCTTAAAACCATAACCCTAAACACTA
Found at i:34671059 original size:22 final size:22
Alignment explanation
Indices: 34671033--34671095 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
34671023 CTCATAACCC
*
34671033 TAAACATTAAACCTTAAAAT-T
1 TAAACCTTAAACCTTAAAATCT
* *
34671054 TAAAACCTTAAACCCTAAACTCT
1 T-AAACCTTAAACCTTAAAATCT
34671077 TAAACCTTAAACTCTTAAA
1 TAAACCTTAAAC-CTTAAA
34671096 CCCAAATCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 27 0.77
23 7 0.20
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (22 bp):
TAAACCTTAAACCTTAAAATCT
Found at i:34671072 original size:15 final size:15
Alignment explanation
Indices: 34671056--34671098 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
34671046 TTAAAATTTA
34671056 AAAC-CTTAAACCCT
1 AAACTCTTAAACCCT
*
34671070 AAACTCTTAAACCTT
1 AAACTCTTAAACCCT
34671085 AAACTCTTAAACCC
1 AAACTCTTAAACCC
34671099 AAATCTCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 4 0.15
15 22 0.85
ACGTcount: A:0.42, C:0.33, G:0.00, T:0.26
Consensus pattern (15 bp):
AAACTCTTAAACCCT
Found at i:34672948 original size:15 final size:15
Alignment explanation
Indices: 34672930--34672999 Score: 51
Period size: 15 Copynumber: 4.9 Consensus size: 15
34672920 AAAGGTATTT
34672930 TTTAATATTTTAATA
1 TTTAATATTTTAATA
* *
34672945 TTTAATATTATAGT-
1 TTTAATATTTTAATA
* *
34672959 TTTCTATTTTTTAA-A
1 TTT-AATATTTTAATA
34672974 TTTAA-A-TTTAATA
1 TTTAATATTTTAATA
*
34672987 TTT-TTATTTTAAT
1 TTTAATATTTTAAT
34673000 TGTCAAATGA
Statistics
Matches: 41, Mismatches: 9, Indels: 11
0.67 0.15 0.18
Matches are distributed among these distances:
12 5 0.12
13 5 0.12
14 10 0.24
15 21 0.51
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (15 bp):
TTTAATATTTTAATA
Found at i:34672990 original size:29 final size:29
Alignment explanation
Indices: 34672928--34672996 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 29
34672918 AAAAAGGTAT
*
34672928 TTTTTAATATTTTAATATTTAATATTATAG
1 TTTTT-ATTTTTTAATATTTAATATTATAG
34672958 TTTTCTATTTTTTAA-ATTTAA-ATTTAATA-
1 TTTT-TATTTTTTAATATTTAATA-TT-ATAG
34672987 TTTTTATTTT
1 TTTTTATTTT
34672997 AATTGTCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
28 7 0.20
29 12 0.34
30 15 0.43
31 1 0.03
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (29 bp):
TTTTTATTTTTTAATATTTAATATTATAG
Found at i:34680847 original size:2 final size:2
Alignment explanation
Indices: 34680840--34680875 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
34680830 TAAAAAGAAA
34680840 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
34680876 TAAAAACTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:34682685 original size:29 final size:31
Alignment explanation
Indices: 34682628--34682685 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 31
34682618 TTCTTAAAAT
* **
34682628 AAAAATACTTAAAATTTAAATTATTTTAATA
1 AAAAATACTTAAAATTTAAAGTAAATTAATA
34682659 AAAAATA-TT-AAATTTAAAGTAAATTAA
1 AAAAATACTTAAAATTTAAAGTAAATTAA
34682686 ATTAATCATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 15 0.62
30 2 0.08
31 7 0.29
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (31 bp):
AAAAATACTTAAAATTTAAAGTAAATTAATA
Found at i:34696100 original size:3 final size:3
Alignment explanation
Indices: 34696092--34696128 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
34696082 TGTTCTTTAC
34696092 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
34696129 AACACGTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:34696701 original size:16 final size:16
Alignment explanation
Indices: 34696680--34696729 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
34696670 TTCTTAATAT
34696680 AATTATTTTTATATTA
1 AATTATTTTTATATTA
*
34696696 AATTATATTTTGA-AATA
1 AATTAT-TTTT-ATATTA
*
34696713 AAATA-TTTTATATTA
1 AATTATTTTTATATTA
34696728 AA
1 AA
34696730 AGATTTCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
14 1 0.04
15 9 0.32
16 6 0.21
17 11 0.39
18 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
AATTATTTTTATATTA
Found at i:34706812 original size:30 final size:29
Alignment explanation
Indices: 34706778--34706847 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
34706768 CTAATAAAAG
*
34706778 TAAAATTATACTTGATCTTTTTAAAAATAA
1 TAAAATTATACTTAAT-TTTTTAAAAATAA
* * *
34706808 TAAAATTTTGATTTAATTTTTTAAAAATTA
1 TAAAATTAT-ACTTAATTTTTTAAAAATAA
*
34706838 TAAAAATATA
1 TAAAATTATA
34706848 AATTATTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
29 1 0.03
30 27 0.82
31 5 0.15
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (29 bp):
TAAAATTATACTTAATTTTTTAAAAATAA
Found at i:34713348 original size:19 final size:20
Alignment explanation
Indices: 34713324--34713368 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
34713314 TTCTTGTGTG
34713324 CTTTATT-TTATTGGTTG-CT
1 CTTTATTGTTA-TGGTTGACT
34713343 CTTTATTGTTATGGTTGACT
1 CTTTATTGTTATGGTTGACT
34713363 -TTTATT
1 CTTTATT
34713369 ACTGGTTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.13, C:0.09, G:0.16, T:0.62
Consensus pattern (20 bp):
CTTTATTGTTATGGTTGACT
Found at i:34719941 original size:17 final size:17
Alignment explanation
Indices: 34719867--34719946 Score: 88
Period size: 17 Copynumber: 4.7 Consensus size: 17
34719857 GGCCCAACAG
*
34719867 AATTTAAATTAATTTTA
1 AATTTAAATTTATTTTA
* *
34719884 AAATTAAGTTTATTTTA
1 AATTTAAATTTATTTTA
* **
34719901 AATTTAAATTCATTGGA
1 AATTTAAATTTATTTTA
*
34719918 AATTTAAATTTATTATA
1 AATTTAAATTTATTTTA
*
34719935 AAGTTAAATTTA
1 AATTTAAATTTA
34719947 AGATTTATTT
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 51 1.00
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (17 bp):
AATTTAAATTTATTTTA
Found at i:34721094 original size:58 final size:58
Alignment explanation
Indices: 34720994--34721180 Score: 209
Period size: 57 Copynumber: 3.2 Consensus size: 58
34720984 AGTTGGTCCC
* * * *
34720994 CAAACTATCCGAAAATTAC-ATTTTGACCTTAAAGTTTCCAAAAGTTACATCTTTACCCT
1 CAAACTTTCC-AAAATTCCAATTTTAACCTTAAAGTTTCCAAAAATTACAT-TTTACCCT
* * *
34721053 -AAATTTTCCAAAATTCTAATTTTAACCTTGAAGTTTCCAAAAATTACATTTTA-CCT
1 CAAACTTTCCAAAATTCCAATTTTAACCTTAAAGTTTCCAAAAATTACATTTTACCCT
* * ** * *
34721109 CAAACTTTCAAAAATTCCATTTTTAACCCCAAATTTTCCAAAAATTGCATTTTACCCT
1 CAAACTTTCCAAAATTCCAATTTTAACCTTAAAGTTTCCAAAAATTACATTTTACCCT
*
34721167 CGAACTTTCCAAAA
1 CAAACTTTCCAAAA
34721181 ATTACCATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
56 3 0.03
57 54 0.50
58 50 0.47
ACGTcount: A:0.37, C:0.23, G:0.04, T:0.36
Consensus pattern (58 bp):
CAAACTTTCCAAAATTCCAATTTTAACCTTAAAGTTTCCAAAAATTACATTTTACCCT
Found at i:34721153 original size:30 final size:29
Alignment explanation
Indices: 34721028--34721426 Score: 232
Period size: 29 Copynumber: 13.7 Consensus size: 29
34721018 GACCTTAAAG
* * * ** *
34721028 TTTCCAAAAGTTACATCTTTACCCTAAAT
1 TTTCCAAAAATTCCATTTTTACCCCGAAC
* * ** *
34721057 TTTCC-AAAATTCTAATTTTAACCTTGAAG
1 TTTCCAAAAATTC-CATTTTTACCCCGAAC
* * *
34721086 TTTCCAAAAATTACA-TTTTACCTCAAAC
1 TTTCCAAAAATTCCATTTTTACCCCGAAC
* *
34721114 TTT-CAAAAATTCCATTTTTAACCCCAAAT
1 TTTCCAAAAATTCCATTTTT-ACCCCGAAC
*
34721143 TTTCCAAAAATTGCA-TTTTACCCTCGAAC
1 TTTCCAAAAATTCCATTTTTACCC-CGAAC
* *
34721172 TTTCCAAAAATTACCA-TTGTACCCCCAAAC
1 TTTCCAAAAATT-CCATTTTTA-CCCCGAAC
* **
34721202 TTT-CAAAAATTCCATTTTTAATCCCGATT
1 TTTCCAAAAATTCCATTTTT-ACCCCGAAC
*
34721231 TTTCCAAAAATT--ATCATTTACCCTCGAA-
1 TTTCCAAAAATTCCAT-TTTTACCC-CGAAC
* * *
34721259 TGTCCAAAAATTCTATTTTTGACCTCGAAC
1 TTTCCAAAAATTCCATTTTT-ACCCCGAAC
34721289 TTTCC-AAAATTACCATTTTTACCCTCGAA-
1 TTTCCAAAAATT-CCATTTTTACCC-CGAAC
* * * *
34721318 TGTCTAAAAACTCCATTTTTAACCCCCTAAC
1 TTTCCAAAAATTCCATTTTT-A-CCCCGAAC
*
34721349 CTTCCAAAAATTACCA-TTTTACCCTCGAA-
1 TTTCCAAAAATT-CCATTTTTACCC-CGAAC
* * * *
34721378 TGTCTAAAAATTCCATTTTAACCCTGAACC
1 TTTCCAAAAATTCCATTTTTACCCCGAA-C
34721408 TTT-CAAAAATTACCATTTT
1 TTTCCAAAAATT-CCATTTT
34721427 ATTCCCGAAG
Statistics
Matches: 288, Mismatches: 53, Indels: 57
0.72 0.13 0.14
Matches are distributed among these distances:
27 10 0.03
28 50 0.17
29 127 0.44
30 80 0.28
31 18 0.06
32 3 0.01
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36
Consensus pattern (29 bp):
TTTCCAAAAATTCCATTTTTACCCCGAAC
Found at i:34721221 original size:59 final size:59
Alignment explanation
Indices: 34721071--34721427 Score: 303
Period size: 58 Copynumber: 6.1 Consensus size: 59
34721061 CAAAATTCTA
* * * *
34721071 ATTTTAACCTTGAAGTTTCCAAAAATTACA-TTTT-A-CCTCAAACTTT-CAAAAATT-CC
1 ATTTTACCCTCGAA-TTT-CAAAAATTCCATTTTTAACCCTCGAACTTTCCAAAAATTACC
* *
34721127 ATTTTTAACCC-CAAATTTTCCAAAAATTGCA-TTTT-ACCCTCGAACTTTCCAAAAATTACC
1 A-TTTT-ACCCTCGAA-TTT-CAAAAATTCCATTTTTAACCCTCGAACTTTCCAAAAATTACC
* * * * ** *
34721187 ATTGTACCCCCAAACTTTCAAAAATTCCATTTTTAATCC-CGATTTTTCCAAAAATTATC
1 ATTTTACCCTCGAA-TTTCAAAAATTCCATTTTTAACCCTCGAACTTTCCAAAAATTACC
* * *
34721246 A-TTTACCCTCGAATGTCCAAAAATTCTATTTTTGA-CCTCGAACTTTCC-AAAATTACC
1 ATTTTACCCTCGAAT-TTCAAAAATTCCATTTTTAACCCTCGAACTTTCCAAAAATTACC
* * * * *
34721303 ATTTTTACCCTCGAATGTCTAAAAACTCCATTTTTAACCCCCTAACCTTCCAAAAATTACC
1 A-TTTTACCCTCGAATTTC-AAAAATTCCATTTTTAACCCTCGAACTTTCCAAAAATTACC
*
34721364 ATTTTACCCTCGAATGTCTAAAAATTCCA-TTTTAACCCT-GAACCTTT-CAAAAATTACC
1 ATTTTACCCTCGAATTTC-AAAAATTCCATTTTTAACCCTCGAA-CTTTCCAAAAATTACC
34721422 ATTTTA
1 ATTTTA
34721428 TTCCCGAAGC
Statistics
Matches: 251, Mismatches: 34, Indels: 30
0.80 0.11 0.10
Matches are distributed among these distances:
56 1 0.00
57 37 0.15
58 81 0.32
59 79 0.31
60 43 0.17
61 10 0.04
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36
Consensus pattern (59 bp):
ATTTTACCCTCGAATTTCAAAAATTCCATTTTTAACCCTCGAACTTTCCAAAAATTACC
Found at i:34721297 original size:88 final size:86
Alignment explanation
Indices: 34720996--34721401 Score: 303
Period size: 88 Copynumber: 4.6 Consensus size: 86
34720986 TTGGTCCCCA
* * * * * * * *
34720996 AACTATCCGAAAATTACATTTTGACCTTAAAGTTTCCAAAAGTTACATCTTT-ACCCTAAATTTT
1 AACTGTCCAAAAATTACATTTT-ACCTCAAACTTT-CAAAAATTCCATTTTTAACCCCAAATTTT
* *
34721060 CC-AAAATT-CTAATTTTAACCTTG
64 CCAAAAATTGC--ATTTTACCCTCG
* *
34721083 AAGTTTCCAAAAATTACATTTTACCTCAAACTTTCAAAAATTCCATTTTTAACCCCAAATTTTCC
1 AACTGTCCAAAAATTACATTTTACCTCAAACTTTCAAAAATTCCATTTTTAACCCCAAATTTTCC
34721148 AAAAATTGCATTTTACCCTCG
66 AAAAATTGCATTTTACCCTCG
* * * * * *
34721169 AACTTTCCAAAAATTACCATTGTACCCCCAAACTTTCAAAAATTCCATTTTTAATCCCGATTTTT
1 AACTGTCCAAAAATTA-CATTTTA-CCTCAAACTTTCAAAAATTCCATTTTTAACCCCAAATTTT
*
34721234 CCAAAAATTATCA-TTTACCCTCG
64 CCAAAAATT-GCATTTTACCCTCG
* * *
34721257 AA-TGTCCAAAAATT-CTATTTTTGACCTCGAACTTTCCAAAATTACCATTTTT-ACCCTCGAA-
1 AACTGTCCAAAAATTAC-A-TTTT-ACCTCAAACTTTCAAAAATT-CCATTTTTAACCC-CAAAT
* * * * * *
34721318 TGTCTAAAAACTCCATTTTTAACCCCCT
61 TTTCCAAAAATTGCA-TTTT-ACCCTCG
* *
34721346 AACCT-TCCAAAAATTACCATTTTACCCTCGAA-TGTCTAAAAATTCCA-TTTTAACCC
1 AA-CTGTCCAAAAATTA-CATTTTA-CCTCAAACTTTC-AAAAATTCCATTTTTAACCC
34721402 TGAACCTTTC
Statistics
Matches: 265, Mismatches: 33, Indels: 40
0.78 0.10 0.12
Matches are distributed among these distances:
85 14 0.05
86 51 0.19
87 73 0.28
88 77 0.29
89 20 0.08
90 27 0.10
91 2 0.01
92 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.04, T:0.36
Consensus pattern (86 bp):
AACTGTCCAAAAATTACATTTTACCTCAAACTTTCAAAAATTCCATTTTTAACCCCAAATTTTCC
AAAAATTGCATTTTACCCTCG
Found at i:34724438 original size:29 final size:31
Alignment explanation
Indices: 34724378--34724439 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 31
34724368 GTTTTTGCCT
34724378 AAATAATATAAAAATAATAATTAATTACGAA
1 AAATAATATAAAAATAATAATTAATTACGAA
*
34724409 AAAT-ATATGAAAAAT-AT-ATTAATTATGAA
1 AAATAATAT-AAAAATAATAATTAATTACGAA
34724438 AA
1 AA
34724440 TAGGTATTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 13 0.45
30 6 0.21
31 10 0.34
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.31
Consensus pattern (31 bp):
AAATAATATAAAAATAATAATTAATTACGAA
Found at i:34725183 original size:19 final size:19
Alignment explanation
Indices: 34725161--34725233 Score: 60
Period size: 19 Copynumber: 3.6 Consensus size: 19
34725151 CATAGAAAAC
34725161 TTATAAAAATTCTAATAAA
1 TTATAAAAATTCTAATAAA
*
34725180 TTATAAAAA-ACATAATAAAAA
1 TTATAAAAATTC-TAAT--AAA
*
34725201 TATTTAAAAATT-TATATAAA
1 T-TATAAAAATTCTA-ATAAA
34725221 CTTATAAAAATTC
1 -TTATAAAAATTC
34725234 ATAAAAATAG
Statistics
Matches: 42, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
18 1 0.02
19 13 0.31
20 12 0.29
21 7 0.17
22 9 0.21
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (19 bp):
TTATAAAAATTCTAATAAA
Found at i:34725237 original size:10 final size:9
Alignment explanation
Indices: 34725156--34725241 Score: 55
Period size: 10 Copynumber: 8.7 Consensus size: 9
34725146 ATAATCATAG
*
34725156 AAAACTTAT
1 AAAAATTAT
*
34725165 AAAAATTCT
1 AAAAATTAT
34725174 AATAAATTAT
1 AA-AAATTAT
*
34725184 AAAAAACATAAT
1 --AAAA-ATTAT
*
34725196 AAAAATATTT
1 AAAAAT-TAT
34725206 AAAAATTTAT
1 AAAAA-TTAT
*
34725216 ATAAACTTAT
1 A-AAAATTAT
34725226 AAAAATTCAT
1 AAAAATT-AT
34725236 AAAAAT
1 AAAAAT
34725242 AGAATTTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
9 16 0.27
10 32 0.53
11 6 0.10
12 6 0.10
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:34726181 original size:13 final size:13
Alignment explanation
Indices: 34726163--34726191 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
34726153 TATTCACATG
34726163 CTTTATATATACA
1 CTTTATATATACA
34726176 CTTTATATATACA
1 CTTTATATATACA
34726189 CTT
1 CTT
34726192 CTACACCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.48
Consensus pattern (13 bp):
CTTTATATATACA
Found at i:34742414 original size:21 final size:20
Alignment explanation
Indices: 34742381--34742419 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
34742371 AAATTTTTTA
*
34742381 AAATTGAGTCGAGTGAAACG
1 AAATTGAATCGAGTGAAACG
34742401 AAATTCGAATCGAGTGAAA
1 AAATT-GAATCGAGTGAAA
34742420 TTGTTCGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.44, C:0.10, G:0.26, T:0.21
Consensus pattern (20 bp):
AAATTGAATCGAGTGAAACG
Found at i:34749157 original size:28 final size:28
Alignment explanation
Indices: 34749121--34749205 Score: 143
Period size: 28 Copynumber: 3.0 Consensus size: 28
34749111 TATATATATG
* * *
34749121 TGTGTATTTAATACTAATATATTTCAAA
1 TGTGCATTTAATACTAAGATATCTCAAA
34749149 TGTGCATTTAATACTAAGATATCTCAAA
1 TGTGCATTTAATACTAAGATATCTCAAA
34749177 TGTGCATTTAATACTAAGATATCTCAAA
1 TGTGCATTTAATACTAAGATATCTCAAA
34749205 T
1 T
34749206 TCATATTCAG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (28 bp):
TGTGCATTTAATACTAAGATATCTCAAA
Found at i:34749586 original size:28 final size:29
Alignment explanation
Indices: 34749532--34749597 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
34749522 TGTTATTCAA
* *
34749532 TTTTTATTAAAATTTCATCTATTTAATTT
1 TTTTTATTAAAATTTAATCTATATAATTT
*
34749561 TTTTTA-TATAAATTTAATCTAATAATAATAT
1 TTTTTATTA-AAATTTAATCT-AT-ATAATTT
34749592 TTTTTA
1 TTTTTA
34749598 ATATGTTTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 2 0.06
29 16 0.52
30 2 0.06
31 11 0.35
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTTTATTAAAATTTAATCTATATAATTT
Found at i:34750491 original size:2 final size:2
Alignment explanation
Indices: 34750484--34750519 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
34750474 AAATCCTATC
*
34750484 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34750520 GTATTTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:34751617 original size:58 final size:59
Alignment explanation
Indices: 34751551--34751671 Score: 192
Period size: 59 Copynumber: 2.1 Consensus size: 59
34751541 ACCCATCAAC
* *
34751551 AAACTAAAC-CCAAATATTTTTAAACCCAAATATAATTTCATTCTTCAAA-AACACTCAT
1 AAACTAAACTCAAAATATTTTTAAACCCAAATATAATTTCATTCCT-AAATAACACTCAT
*
34751609 AAACTAAACTCAAAATATTTTTAAACCCAAATATAATTTTATTCCTAAATAACACTCAT
1 AAACTAAACTCAAAATATTTTTAAACCCAAATATAATTTCATTCCTAAATAACACTCAT
34751668 AAAC
1 AAAC
34751672 AACTCCTTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
58 12 0.21
59 46 0.79
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (59 bp):
AAACTAAACTCAAAATATTTTTAAACCCAAATATAATTTCATTCCTAAATAACACTCAT
Found at i:34756614 original size:12 final size:12
Alignment explanation
Indices: 34756597--34756631 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
34756587 GTGAGGAGGG
34756597 AATAAAAAATAT
1 AATAAAAAATAT
*
34756609 AATAAAAATTAT
1 AATAAAAAATAT
34756621 ATATAAAAAAT
1 A-ATAAAAAAT
34756632 TTGAGAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AATAAAAAATAT
Found at i:34757901 original size:15 final size:14
Alignment explanation
Indices: 34757883--34757921 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
34757873 TTCTTGTGAG
34757883 TATTTGATTTTGATA
1 TATTTGATTTT-ATA
*
34757898 TATTATGAGTTTATA
1 TATT-TGATTTTATA
34757913 TATTTGATT
1 TATTTGATT
34757922 AAATTATGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 4 0.19
15 11 0.52
16 6 0.29
ACGTcount: A:0.28, C:0.00, G:0.13, T:0.59
Consensus pattern (14 bp):
TATTTGATTTTATA
Found at i:34767318 original size:17 final size:17
Alignment explanation
Indices: 34767298--34767334 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
34767288 AATGTAACAG
*
34767298 AAAAATAACAAAACAAA
1 AAAAATAAAAAAACAAA
*
34767315 AAAAATAAAAAAATAAA
1 AAAAATAAAAAAACAAA
34767332 AAA
1 AAA
34767335 TGAAACATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.86, C:0.05, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAAATAAAAAAACAAA
Found at i:34773176 original size:2 final size:2
Alignment explanation
Indices: 34773169--34773194 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
34773159 TCTTGTTCCC
34773169 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
34773195 GTTTGTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:34775166 original size:4 final size:4
Alignment explanation
Indices: 34775157--34775183 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
34775147 ATCATGCATC
34775157 ATGT ATGT ATGT ATGT ATGT ATGT ATG
1 ATGT ATGT ATGT ATGT ATGT ATGT ATG
34775184 GTACAGCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (4 bp):
ATGT
Found at i:34775863 original size:16 final size:17
Alignment explanation
Indices: 34775844--34775882 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
34775834 ATTTTACATC
*
34775844 AAAATT-ATTGAATATA
1 AAAATTCATTGAATAGA
*
34775860 AAAATTCATTTAATAGA
1 AAAATTCATTGAATAGA
34775877 AAAATT
1 AAAATT
34775883 TAGAGGTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (17 bp):
AAAATTCATTGAATAGA
Found at i:34776393 original size:16 final size:17
Alignment explanation
Indices: 34776361--34776406 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
34776351 ATATAATACC
*
34776361 AATTTTA-ACATATTAA
1 AATTTTATAAATATTAA
34776377 AATTTTATAAATA-TAA
1 AATTTTATAAATATTAA
*
34776393 AATATTTTTAAATA
1 AAT-TTTATAAATA
34776407 GGAATTATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTTTATAAATATTAA
Found at i:34776404 original size:17 final size:17
Alignment explanation
Indices: 34776363--34776406 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
34776353 ATAATACCAA
34776363 TTTTAACATATTAAAATT
1 TTTTAA-ATATTAAAATT
*
34776381 TTATAAATA-TAAAATAT
1 TTTTAAATATTAAAAT-T
34776398 TTTTAAATA
1 TTTTAAATA
34776407 GGAATTATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 6 0.26
17 12 0.52
18 5 0.22
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTAAATATTAAAATT
Found at i:34782721 original size:19 final size:18
Alignment explanation
Indices: 34782679--34782721 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
34782669 AAGAATAATT
* *
34782679 TTTATTTATTAAGTAATA
1 TTTATTTATTAAGAAAAA
*
34782697 TATATTTGATTAAGAAAAA
1 TTTATTT-ATTAAGAAAAA
34782716 TTTATT
1 TTTATT
34782722 CAAGTACAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (18 bp):
TTTATTTATTAAGAAAAA
Found at i:34785112 original size:4 final size:4
Alignment explanation
Indices: 34785105--34785129 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
34785095 TTTTCCTACA
34785105 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
34785130 GAAATAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:34785135 original size:22 final size:24
Alignment explanation
Indices: 34785109--34785164 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
34785099 CCTACAAAAT
* *
34785109 AAATAAATAAATAAATAAAT-AG-
1 AAATAAATAAAGAAAGAAATCAGT
*
34785131 AAATAATTAAAGAAAGAAATCAGT
1 AAATAAATAAAGAAAGAAATCAGT
*
34785155 ATATAAATAA
1 AAATAAATAA
34785165 GTATTAGCAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 17 0.63
23 2 0.07
24 8 0.30
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (24 bp):
AAATAAATAAAGAAAGAAATCAGT
Found at i:34788488 original size:52 final size:52
Alignment explanation
Indices: 34788410--34788511 Score: 204
Period size: 52 Copynumber: 2.0 Consensus size: 52
34788400 GTTACCAAAC
34788410 CTTCTAGATCCGAAAACAAAACCCATTATTGCTTTTCCTTCAACTCCCTCGT
1 CTTCTAGATCCGAAAACAAAACCCATTATTGCTTTTCCTTCAACTCCCTCGT
34788462 CTTCTAGATCCGAAAACAAAACCCATTATTGCTTTTCCTTCAACTCCCTC
1 CTTCTAGATCCGAAAACAAAACCCATTATTGCTTTTCCTTCAACTCCCTC
34788512 ATTGTAACAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.27, C:0.33, G:0.07, T:0.32
Consensus pattern (52 bp):
CTTCTAGATCCGAAAACAAAACCCATTATTGCTTTTCCTTCAACTCCCTCGT
Found at i:34791333 original size:59 final size:59
Alignment explanation
Indices: 34791260--34791715 Score: 691
Period size: 59 Copynumber: 7.7 Consensus size: 59
34791250 TGCCTCTCTG
** *
34791260 AAAATTCCATTTTTAACCCCGATTTCACTGAAAATTACCATTTTACCCCCGAAACTTCT
1 AAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAGCTTCT
* * * *
34791319 AAAATTCCGTTTTTAACTCCGATTTCACCAAAAATTACCATTTTACCCCCGAATCTTTT
1 AAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAGCTTCT
34791378 AAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAGCTTCT
1 AAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAGCTTCT
* * * * * * *
34791437 AAAATTCTATTTTTAATCCCGATTTTATCAAAAATTACCATTTTACCCCCAAATCTTTT
1 AAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAGCTTCT
**
34791496 AAAATTCCATTTTTAACCCCGATTTCACTGAAAATTACCATTTTACCCCCGAAGCTTCT
1 AAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAGCTTCT
* *
34791555 AAAATTCTATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCTCGAAGCTTCT
1 AAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAGCTTCT
* * *
34791614 AAAATTCCATTTTTAACCCCAATTTCACCAAAAATTGCCATTTTACCCCCGAATCTGT-T
1 AAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAGCT-TCT
*
34791673 AAAATTCCATTTTTAACCCCGATTACACC-AAAATTACCATTTT
1 AAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTT
34791716 GCTCCCGGGT
Statistics
Matches: 358, Mismatches: 38, Indels: 3
0.90 0.10 0.01
Matches are distributed among these distances:
58 13 0.04
59 344 0.96
60 1 0.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.36
Consensus pattern (59 bp):
AAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAGCTTCT
Found at i:34803741 original size:68 final size:68
Alignment explanation
Indices: 34803616--34804301 Score: 1084
Period size: 68 Copynumber: 10.0 Consensus size: 68
34803606 CTGCAGGTCT
* * *
34803616 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTAATCTCTGAAATTGAAGTA
1 CAACGCCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTGATCTCTGAAATTGAAGTA
34803681 AGAG
65 AGAG
* * *
34803685 CAACGTCATCCCCTTGAAATTGAAGTGGAGCGGATAACACGTCTTGATCTCTGAAATTGAAGTAA
1 CAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTGATCTCTGAAATTGAAGTAA
34803750 GAG
66 GAG
* *
34803753 CAACGCCATCCCCTTGAAATTGAAATAGAGTGGATAACGCGTCTTGATCTCTGAAATTGAAGTAA
1 CAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTGATCTCTGAAATTGAAGTAA
34803818 GAG
66 GAG
*
34803821 CAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAA
1 CAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTGATCTCTGAAATTGAAGTAA
34803886 GAG
66 GAG
* ** *
34803889 CAACGTCATCCTTTTGAAATTGAAGTAGAGTTGGATAACACGTCTTAATCTCTGAAATTGAAGTA
1 CAACGCCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTGATCTCTGAAATTGAAGTA
34803954 AGAG
65 AGAG
* *
34803958 CAACGTCATCCCCTTGAAATTGAAGTAGAGCGGATAACACGTCTTGATCTCTGAAATTGAAGTAA
1 CAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTGATCTCTGAAATTGAAGTAA
34804023 GAG
66 GAG
* * * *
34804026 CAACACCATCCTCTTGAAATTGAAGTAAAGTGGATAACGCGTCTTGATCTCTGAAATTGAAGTAA
1 CAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTGATCTCTGAAATTGAAGTAA
34804091 GAG
66 GAG
* *
34804094 CAACGCCATCCTCTTGAAATTGAAGTAGAGTGGATAACGCGTCTTGATCTCTGAAATTGAAGTAA
1 CAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTGATCTCTGAAATTGAAGTAA
34804159 GAG
66 GAG
* *
34804162 CAACGCCATCCCCTTGAAATAGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAA
1 CAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTGATCTCTGAAATTGAAGTAA
34804227 GAG
66 GAG
* * * * * *
34804230 CAACGTCGTCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGTCTTTATCTCTGAAATTGAAGTA
1 CAACGCCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTGATCTCTGAAATTGAAGTA
34804295 AGAG
65 AGAG
34804299 CAA
1 CAA
34804302 GATCATTTCC
Statistics
Matches: 577, Mismatches: 38, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
68 445 0.77
69 132 0.23
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (68 bp):
CAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTGATCTCTGAAATTGAAGTAA
GAG
Found at i:34804103 original size:273 final size:273
Alignment explanation
Indices: 34803616--34804301 Score: 1185
Period size: 273 Copynumber: 2.5 Consensus size: 273
34803606 CTGCAGGTCT
34803616 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTAATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTAATCTCTGAAATTGAAGTA
*
34803681 AGAGCAACGTCATCCCCTTGAAATTGAAGTGGAGCGGATAACACGTCTTGATCTCTGAAATTGAA
66 AGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGCGGATAACACGTCTTGATCTCTGAAATTGAA
* *
34803746 GTAAGAGCAACGCCATCCCCTTGAAATTGAAATAGAGTGGATAACGCGTCTTGATCTCTGAAATT
131 GTAAGAGCAACACCATCCCCTTGAAATTGAAATAAAGTGGATAACGCGTCTTGATCTCTGAAATT
*
34803811 GAAGTAAGAGCAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAA
196 GAAGTAAGAGCAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTGATCTCTGAA
34803876 ATTGAAGTAAGAG
261 ATTGAAGTAAGAG
*
34803889 CAACGTCATCCTTTTGAAATTGAAGTAGAGTTGGATAACACGTCTTAATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTAATCTCTGAAATTGAAGTA
34803954 AGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGCGGATAACACGTCTTGATCTCTGAAATTGAA
66 AGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGCGGATAACACGTCTTGATCTCTGAAATTGAA
* *
34804019 GTAAGAGCAACACCATCCTCTTGAAATTGAAGTAAAGTGGATAACGCGTCTTGATCTCTGAAATT
131 GTAAGAGCAACACCATCCCCTTGAAATTGAAATAAAGTGGATAACGCGTCTTGATCTCTGAAATT
* *
34804084 GAAGTAAGAGCAACGCCATCCTCTTGAAATTGAAGTAGAGTGGATAACGCGTCTTGATCTCTGAA
196 GAAGTAAGAGCAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTGATCTCTGAA
34804149 ATTGAAGTAAGAG
261 ATTGAAGTAAGAG
* * * *
34804162 CAACGCCATCCCCTTGAAATAGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTAATCTCTGAAATTGAAGTA
* * * * * *
34804226 AGAGCAACGTCGTCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGTCTTTATCTCTGAAATTGA
66 AGAGCAACGTCATCCCCTTGAAATTGAAGTAGAG-CGGATAACACGTCTTGATCTCTGAAATTGA
34804291 AGTAAGAGCAA
130 AGTAAGAGCAA
34804302 GATCATTTCC
Statistics
Matches: 392, Mismatches: 20, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
272 65 0.17
273 327 0.83
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (273 bp):
CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTAATCTCTGAAATTGAAGTA
AGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGCGGATAACACGTCTTGATCTCTGAAATTGAA
GTAAGAGCAACACCATCCCCTTGAAATTGAAATAAAGTGGATAACGCGTCTTGATCTCTGAAATT
GAAGTAAGAGCAACGCCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTGATCTCTGAA
ATTGAAGTAAGAG
Done.