Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 124 of 143
Found at i:36746244 original size:59 final size:59
Alignment explanation
Indices: 36746056--36746480 Score: 559
Period size: 59 Copynumber: 7.2 Consensus size: 59
36746046 AGACTGTCCG
* * * * * *
36746056 AAAATTATCATTTTACCCCTAAACTTTTCAAAATTCCA-TTTTAACCCTGATTTCATCA
1 AAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGGTTTCACCA
* * * *
36746114 AAAATTACCATTTAACCCTCGAAC-TTCCTAAAATTCCA-TTTTAACCCCGGTTTCATCA
1 AAAATTACCATTTTACCCCCAAACTTTCC-AAAATTCCATTTTTAACCCCGGTTTCACCA
* *
36746172 AAAATTATCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGGGTTCACCA
1 AAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGGTTTCACCA
* * * *
36746231 AAAATTACTATTTTACCCCCAAAATTTCCAAAATTCCATTATTAACCTCGGTTTCACCA
1 AAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGGTTTCACCA
* *
36746290 AAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCA
1 AAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGGTTTCACCA
* * * * *
36746349 AAAATTACCATTTTACCCTCGAACTTTCCAAAATTCCATTATTAACCCCAGTTTCATCA
1 AAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGGTTTCACCA
* * * * * *
36746408 AAAATTACTATTTTACTCCCGAACTGTCCAAGATTCCATTTTTAACCTCGGTTTCACCA
1 AAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGGTTTCACCA
36746467 AAAATTACCATTTT
1 AAAATTACCATTTT
36746481 GCCCTCCGCG
Statistics
Matches: 321, Mismatches: 43, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
57 3 0.01
58 75 0.23
59 243 0.76
ACGTcount: A:0.33, C:0.28, G:0.04, T:0.35
Consensus pattern (59 bp):
AAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGGTTTCACCA
Found at i:36750123 original size:104 final size:106
Alignment explanation
Indices: 36749904--36750122 Score: 307
Period size: 111 Copynumber: 2.0 Consensus size: 106
36749894 CCGTGTTGGC
*
36749904 TTTTGTGAAGTAATTTTTAGTATTATTGTGCTGGTGTGTTTTCAATAAAATACGAATGCCTATTG
1 TTTTGTGAAGTAATTCTTAGTATTATTGTGCTGGTGTGTTTTCAATAAAATACGAATGCCTATT-
* *
36749969 CCCACGCATTTGTATGTAATGAAAGTAGTGACTGAAGTTTTCATGT
65 ----CGCATTTGTATGGAATGAAAGTAGCGACTGAAGTTTTCATGT
* * *
36750015 TTTTGTGAATTAGTTCTTAGTATTATTGTGCTGGTGTGTTTTCAATAAAATATGAATGCCTA-T-
1 TTTTGTGAAGTAATTCTTAGTATTATTGTGCTGGTGTGTTTTCAATAAAATACGAATGCCTATTC
*
36750078 GCATTTGTATGGAATGAAAGTAGCGATTGAAGTTTTCATTGT
66 GCATTTGTATGGAATGAAAGTAGCGACTGAAGTTTTCA-TGT
36750120 TTT
1 TTT
36750123 GCTTTTAGTT
Statistics
Matches: 100, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
104 35 0.35
105 6 0.06
110 1 0.01
111 58 0.58
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.43
Consensus pattern (106 bp):
TTTTGTGAAGTAATTCTTAGTATTATTGTGCTGGTGTGTTTTCAATAAAATACGAATGCCTATTC
GCATTTGTATGGAATGAAAGTAGCGACTGAAGTTTTCATGT
Found at i:36751521 original size:2 final size:2
Alignment explanation
Indices: 36751465--36751502 Score: 67
Period size: 2 Copynumber: 18.5 Consensus size: 2
36751455 AAAAATACCA
36751465 AT AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36751503 AAAATATTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 33 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:36752763 original size:31 final size:30
Alignment explanation
Indices: 36752697--36752765 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
36752687 TAAGGAGAGG
* *
36752697 TTTTAAAATTTTTAGAAATTTACTTGAAAT
1 TTTTAAAACTTTTAGAAATTTAATTGAAAT
*
36752727 ATTTAAAACTTTTAGAAAATTTAATT-AGAAT
1 TTTTAAAACTTTTAG-AAATTTAATTGA-AAT
36752758 TTTTAAAA
1 TTTTAAAA
36752766 ATGTTGAGGG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 14 0.42
31 19 0.58
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (30 bp):
TTTTAAAACTTTTAGAAATTTAATTGAAAT
Found at i:36756490 original size:28 final size:28
Alignment explanation
Indices: 36756431--36756530 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
36756421 ATTCGAGGGT
* * * *
36756431 AAAATGGTAATTTTGGCAGTGTCGGGTTA
1 AAAATGG-AATTTTGGAAGTTTGGGGTCA
*
36756460 AAAATGGAATTTTGGAAGTTTGGGGGCA
1 AAAATGGAATTTTGGAAGTTTGGGGTCA
**
36756488 AAAATATAATTTTTGGAAGTTTTGGGGTCA
1 AAAATGGAA-TTTTGGAAG-TTTGGGGTCA
36756518 AAAATGGAATTTT
1 AAAATGGAATTTT
36756531 TGAAAATTCG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
28 23 0.39
29 20 0.34
30 16 0.27
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.35
Consensus pattern (28 bp):
AAAATGGAATTTTGGAAGTTTGGGGTCA
Found at i:36756514 original size:30 final size:30
Alignment explanation
Indices: 36756459--36756567 Score: 109
Period size: 29 Copynumber: 3.8 Consensus size: 30
36756449 GTGTCGGGTT
*
36756459 AAAAATGGAA-TTTTGGAAG-TTTGGGGGC
1 AAAAATGTAATTTTTGGAAGTTTTGGGGGC
* *
36756487 AAAAATATAATTTTTGGAAGTTTTGGGGTC
1 AAAAATGTAATTTTTGGAAGTTTTGGGGGC
* ** * *
36756517 AAAAATGGAATTTTT-GAAAATTCGAGGGC
1 AAAAATGTAATTTTTGGAAGTTTTGGGGGC
*
36756546 -AAAATGTAATTTTTGAAAGTTT
1 AAAAATGTAATTTTTGGAAGTTT
36756568 CAAGGTCAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
28 21 0.33
29 22 0.34
30 21 0.33
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.35
Consensus pattern (30 bp):
AAAAATGTAATTTTTGGAAGTTTTGGGGGC
Found at i:36756530 original size:58 final size:58
Alignment explanation
Indices: 36756459--36756675 Score: 222
Period size: 58 Copynumber: 3.7 Consensus size: 58
36756449 GTGTCGGGTT
* * * * *
36756459 AAAAATGGAA-TTTTGGAAGTTTGGGGGCAAAAATATAATTTTTGGAAGTTTTGGGGTC
1 AAAAATGGAATTTTTGGAAGTTCGAGGGC-AAAATATAATTTTTGAAAGTTTCGAGGTC
* * * *
36756517 AAAAATGGAATTTTTGAAAATTCGAGGGCAAAATGTAATTTTTGAAAGTTTCAAGGTC
1 AAAAATGGAATTTTTGGAAGTTCGAGGGCAAAATATAATTTTTGAAAGTTTCGAGGTC
* * * * *
36756575 AAAAAGGGAATTTTTAGAAGTTC-AGGGTAAGAATGTAATTTTTGAAAGTTTCGAGGTT
1 AAAAATGGAATTTTTGGAAGTTCGAGGGCAA-AATATAATTTTTGAAAGTTTCGAGGTC
* * * *
36756633 AAATATGTAATTTTAGAGAAGTTCGGGGGTCAAAATATAATTT
1 AAAAATGGAATTTTTG-GAAGTTCGAGGG-CAAAATATAATTT
36756676 CTGGATAGTT
Statistics
Matches: 130, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
57 6 0.05
58 89 0.68
59 21 0.16
60 12 0.09
61 2 0.02
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (58 bp):
AAAAATGGAATTTTTGGAAGTTCGAGGGCAAAATATAATTTTTGAAAGTTTCGAGGTC
Found at i:36756548 original size:29 final size:29
Alignment explanation
Indices: 36756459--36756630 Score: 120
Period size: 28 Copynumber: 5.9 Consensus size: 29
36756449 GTGTCGGGTT
* * *
36756459 AAAAATGGAATTTTGGAAGTTT-GGGGGC
1 AAAAATGGAATTTTTGAAATTTCGAGGGC
** * *
36756487 AAAAATATAATTTTTGGAAGTTTTG-GGGTC
1 AAAAATGGAATTTTT-GAAATTTCGAGGG-C
*
36756517 AAAAATGGAATTTTTGAAAATTCGAGGGC
1 AAAAATGGAATTTTTGAAATTTCGAGGGC
* * *
36756546 -AAAATGTAATTTTTGAAAGTTTCAAGGTC
1 AAAAATGGAATTTTTGAAA-TTTCGAGGGC
* * *
36756575 AAAAAGGGAATTTTT-AGAAGTTC-AGGGT
1 AAAAATGGAATTTTTGA-AATTTCGAGGGC
* *
36756603 AAGAATGTAATTTTTGAAAGTTTCGAGG
1 AAAAATGGAATTTTTGAAA-TTTCGAGG
36756631 TTAAATATGT
Statistics
Matches: 113, Mismatches: 21, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
28 46 0.41
29 32 0.28
30 35 0.31
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.33
Consensus pattern (29 bp):
AAAAATGGAATTTTTGAAATTTCGAGGGC
Found at i:36756556 original size:28 final size:28
Alignment explanation
Indices: 36756460--36756675 Score: 125
Period size: 30 Copynumber: 7.4 Consensus size: 28
36756450 TGTCGGGTTA
* * * *
36756460 AAAATGGAA-TTTTGGAAGTTTGGGGGC
1 AAAATGTAATTTTTGAAAGTTCGAGGGC
* * *
36756487 AAAAATATAATTTTTGGAAGTTTTG-GGGTC
1 -AAAATGTAATTTTTGAAAG-TTCGAGGG-C
* *
36756517 AAAAATGGAATTTTTGAAAATTCGAGGGC
1 -AAAATGTAATTTTTGAAAGTTCGAGGGC
* *
36756546 AAAATGTAATTTTTGAAAGTTTCAAGGTC
1 AAAATGTAATTTTTGAAAG-TTCGAGGGC
* * *
36756575 AAAAAGGGAATTTTT-AGAAGTTC-AGGGT
1 -AAAATGTAATTTTTGA-AAGTTCGAGGGC
**
36756603 AAGAATGTAATTTTTGAAAGTTTCGAGGTT
1 AA-AATGTAATTTTTGAAAG-TTCGAGGGC
* *
36756633 AAATATGTAATTTTAGAGAAGTTCGGGGGTC
1 AAA-ATGTAATTTTTGA-AAGTTCGAGGG-C
*
36756664 AAAATATAATTT
1 AAAATGTAATTT
36756676 CTGGATAGTT
Statistics
Matches: 151, Mismatches: 23, Indels: 26
0.75 0.12 0.13
Matches are distributed among these distances:
27 2 0.01
28 40 0.26
29 32 0.21
30 71 0.47
31 6 0.04
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.34
Consensus pattern (28 bp):
AAAATGTAATTTTTGAAAGTTCGAGGGC
Found at i:36756643 original size:30 final size:29
Alignment explanation
Indices: 36756488--36756675 Score: 136
Period size: 30 Copynumber: 6.4 Consensus size: 29
36756478 TTTGGGGGCA
* * * *
36756488 AAAATATAATTTTTGGAAGTTTTGGGGTC
1 AAAATGTAATTTTTGAAAGTTTCGAGGTC
* * *
36756517 AAAAATGGAATTTTTGAAA-ATTCGAGGGC
1 -AAAATGTAATTTTTGAAAGTTTCGAGGTC
*
36756546 AAAATGTAATTTTTGAAAGTTTCAAGGTC
1 AAAATGTAATTTTTGAAAGTTTCGAGGTC
* *
36756575 AAAAAGGGAATTTTT-AGAAG-TTC-AGGGT-
1 -AAAATGTAATTTTTGA-AAGTTTCGA-GGTC
*
36756603 AAGAATGTAATTTTTGAAAGTTTCGAGGTT
1 AA-AATGTAATTTTTGAAAGTTTCGAGGTC
* *
36756633 AAATATGTAATTTTAGAGAAG-TTCGGGGGTC
1 AAA-ATGTAATTTTTGA-AAGTTTC-GAGGTC
*
36756664 AAAATATAATTT
1 AAAATGTAATTT
36756676 CTGGATAGTT
Statistics
Matches: 127, Mismatches: 19, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
27 2 0.02
28 31 0.24
29 28 0.22
30 56 0.44
31 10 0.08
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.35
Consensus pattern (29 bp):
AAAATGTAATTTTTGAAAGTTTCGAGGTC
Found at i:36757802 original size:12 final size:12
Alignment explanation
Indices: 36757785--36757810 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36757775 TATCTGCCAT
36757785 TAATATTATTAA
1 TAATATTATTAA
36757797 TAATATTATTAA
1 TAATATTATTAA
36757809 TA
1 TA
36757811 TTAAAACAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TAATATTATTAA
Found at i:36758495 original size:13 final size:14
Alignment explanation
Indices: 36758463--36758497 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
36758453 TTTAGTCCAA
36758463 TTGGACTTGTAAAC
1 TTGGACTTGTAAAC
*
36758477 TTGGACTTGT-AAT
1 TTGGACTTGTAAAC
36758490 TTGGACTT
1 TTGGACTT
36758498 TATTTGTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.23, C:0.11, G:0.23, T:0.43
Consensus pattern (14 bp):
TTGGACTTGTAAAC
Found at i:36758557 original size:23 final size:23
Alignment explanation
Indices: 36758531--36758602 Score: 87
Period size: 23 Copynumber: 3.2 Consensus size: 23
36758521 TACCATAATA
36758531 TTAAATTTAAA-TTAAATTCAAAC
1 TTAAATTTAAATTTAAA-TCAAAC
*
36758554 TTAAA-TTAAATTTAAATCAAAA
1 TTAAATTTAAATTTAAATCAAAC
*
36758576 ATAAATTTAAATTTAAAAT-AAAC
1 TTAAATTTAAATTT-AAATCAAAC
36758599 TTAA
1 TTAA
36758603 TTTCAAAGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
22 14 0.33
23 24 0.57
24 4 0.10
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (23 bp):
TTAAATTTAAATTTAAATCAAAC
Found at i:36758580 original size:17 final size:17
Alignment explanation
Indices: 36758560--36758602 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
36758550 AAACTTAAAT
36758560 TAAATTTAAATCAAAAA
1 TAAATTTAAATCAAAAA
**
36758577 TAAATTTAAATTTAAAA
1 TAAATTTAAATCAAAAA
*
36758594 TAAACTTAA
1 TAAATTTAA
36758603 TTTCAAAGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAATTTAAATCAAAAA
Found at i:36758585 original size:28 final size:28
Alignment explanation
Indices: 36758530--36758588 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
36758520 TTACCATAAT
* *
36758530 ATTAAATTTAAATTAAATTCAAACTTAA
1 ATTAAATTTAAATAAAAATCAAACTTAA
*
36758558 ATTAAATTTAAATCAAAAAT-AAATTTAA
1 ATTAAATTTAAAT-AAAAATCAAACTTAA
36758586 ATT
1 ATT
36758589 TAAAATAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 23 0.85
29 4 0.15
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (28 bp):
ATTAAATTTAAATAAAAATCAAACTTAA
Found at i:36758594 original size:7 final size:6
Alignment explanation
Indices: 36758531--36758592 Score: 58
Period size: 6 Copynumber: 10.8 Consensus size: 6
36758521 TACCATAATA
* * * *
36758531 TTAAAT TTAAA- TTAAAT TCAAAC TTAAA- TTAAAT TTAAA- TCAAAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
36758576 ATAAAT TTAAAT TTAAA
1 TTAAAT TTAAAT TTAAA
36758593 ATAAACTTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
5 14 0.31
6 31 0.69
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (6 bp):
TTAAAT
Found at i:36758597 original size:11 final size:12
Alignment explanation
Indices: 36758531--36758602 Score: 53
Period size: 11 Copynumber: 6.3 Consensus size: 12
36758521 TACCATAATA
36758531 TTAAATTTAAA-
1 TTAAATTTAAAC
*
36758542 TTAAATTCAAAC
1 TTAAATTTAAAC
*
36758554 TTAAA-TTAAAT
1 TTAAATTTAAAC
* *
36758565 TTAAA-TCAAAA
1 TTAAATTTAAAC
* *
36758576 ATAAATTTAAAT
1 TTAAATTTAAAC
*
36758588 TTAAA-ATAAAC
1 TTAAATTTAAAC
36758599 TTAA
1 TTAA
36758603 TTTCAAAGCA
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
11 35 0.73
12 13 0.27
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (12 bp):
TTAAATTTAAAC
Found at i:36758870 original size:29 final size:28
Alignment explanation
Indices: 36758839--36758938 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
36758829 ATTTGAGGGA
*
36758839 AAAATGATGATTTTTTGATGCTCGGGGT
1 AAAATGATAATTTTTTGATGCTCGGGGT
*
36758867 AAAATGATGATTTTTTGATGCTCGGGGT
1 AAAATGATAATTTTTTGATGCTCGGGGT
* * *
36758895 AAAATGATAATTTTTGGAAGCTCGAAGGT
1 AAAATGATAATTTTTTGATGCTCG-GGGT
36758924 AAAAATG-TAATTTTT
1 -AAAATGATAATTTTT
36758939 GATAAGTTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
28 49 0.74
29 11 0.17
30 6 0.09
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (28 bp):
AAAATGATAATTTTTTGATGCTCGGGGT
Found at i:36758879 original size:28 final size:28
Alignment explanation
Indices: 36758839--36758927 Score: 133
Period size: 28 Copynumber: 3.1 Consensus size: 28
36758829 ATTTGAGGGA
36758839 AAAATGATGATTTTTTGATGCTCGGGGT
1 AAAATGATGATTTTTTGATGCTCGGGGT
36758867 AAAATGATGATTTTTTGATGCTCGGGGT
1 AAAATGATGATTTTTTGATGCTCGGGGT
* * * *
36758895 AAAATGATAATTTTTGGAAGCTCGAAGGT
1 AAAATGATGATTTTTTGATGCTCG-GGGT
36758924 AAAA
1 AAAA
36758928 ATGTAATTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
28 49 0.88
29 7 0.12
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.35
Consensus pattern (28 bp):
AAAATGATGATTTTTTGATGCTCGGGGT
Found at i:36758965 original size:59 final size:58
Alignment explanation
Indices: 36758890--36759260 Score: 280
Period size: 59 Copynumber: 6.4 Consensus size: 58
36758880 TTTGATGCTC
* * *
36758890 GGGGT-AAAATGATAATTTTTGGAAGCTCGAAGGTAAAAATGTAATTTTTGATAAGTTTA
1 GGGGTAAAAATG-TAATTTTTGAAAG-TTGAAGGTAAAAATGTAATTTTTGAGAAGTTTA
* * * * **
36758949 GGGGTAAAAATGTAATTTTTGAAAGTAAGAGGGTTAAAATGTGATTTTTG-GAAGCAT-
1 GGGGTAAAAATGTAATTTTTGAAAGT-TGAAGGTAAAAATGTAATTTTTGAGAAGTTTA
* * * * *
36759006 GGGGTAAAATTGTGATTTTTGGAAGTTTAAGGGCAAAAATGTAA-TTTTGAGAAGTTTA
1 GGGGTAAAAATGTAATTTTTGAAAGTTGAA-GGTAAAAATGTAATTTTTGAGAAGTTTA
* * * * *
36759064 AGGGTCAAAATGTAATTTTTAGAAAGTTTAAGGGTCAAAATGTAATTTTTGAAAAGTTT-
1 GGGGTAAAAATGTAATTTTT-GAAAGTTGAA-GGTAAAAATGTAATTTTTGAGAAGTTTA
* * *
36759123 GAGGGTCAAAATGTAATTTTTGAAACGTTTAAAGGTTAAAATGTAATTTTT-AGAAAGTTTA
1 G-GGGTAAAAATGTAATTTTTGAAA-G-TTGAAGGTAAAAATGTAATTTTTGAG-AAGTTTA
* * * * *
36759184 -GGGTTAAAGTGTAATTTTTGAAAAATTTGAGGGTAAAAAATG--ATTTTT-AAAAGTTTA
1 GGGGTAAAAATGTAATTTTTG--AAAGTTGAAGGT-AAAAATGTAATTTTTGAGAAGTTTA
*
36759241 -GGG-ACAAAATATAATTTTTG
1 GGGGTA-AAAATGTAATTTTTG
36759261 GAAAAGTTTT
Statistics
Matches: 255, Mismatches: 41, Indels: 34
0.77 0.12 0.10
Matches are distributed among these distances:
56 6 0.02
57 61 0.24
58 28 0.11
59 86 0.34
60 67 0.26
61 7 0.03
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.36
Consensus pattern (58 bp):
GGGGTAAAAATGTAATTTTTGAAAGTTGAAGGTAAAAATGTAATTTTTGAGAAGTTTA
Found at i:36759019 original size:28 final size:27
Alignment explanation
Indices: 36758839--36759030 Score: 127
Period size: 28 Copynumber: 6.7 Consensus size: 27
36758829 ATTTGAGGGA
* * *
36758839 AAAATGATGATTTTTTGATGCTCGGGGT
1 AAAATG-TAATTTTTGGAAGCTCGGGGT
* * *
36758867 AAAATGATGATTTTTTGATGCTCGGGGT
1 AAAATG-TAATTTTTGGAAGCTCGGGGT
*
36758895 AAAATGATAATTTTTGGAAGCTCGAAGGT
1 AAAATG-TAATTTTTGGAAGCTCG-GGGT
* * *
36758924 AAAAATGTAATTTTTGATAAGTTTAGGGGT
1 -AAAATGTAATTTTTG-GAAG-CTCGGGGT
* *
36758954 AAAAATGTAATTTTTGAAAG-TAAGAGGGTT
1 -AAAATGTAATTTTTGGAAGCT-CG-GGG-T
*
36758984 AAAATGTGATTTTTGGAAGCAT-GGGGT
1 AAAATGTAATTTTTGGAAGC-TCGGGGT
*
36759011 AAAATTGTGATTTTTGGAAG
1 AAAA-TGTAATTTTTGGAAG
36759031 TTTAAGGGCA
Statistics
Matches: 143, Mismatches: 11, Indels: 20
0.82 0.06 0.11
Matches are distributed among these distances:
27 6 0.04
28 69 0.48
29 36 0.25
30 29 0.20
31 3 0.02
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.36
Consensus pattern (27 bp):
AAAATGTAATTTTTGGAAGCTCGGGGT
Found at i:36759220 original size:29 final size:30
Alignment explanation
Indices: 36758925--36759274 Score: 307
Period size: 30 Copynumber: 11.9 Consensus size: 30
36758915 CTCGAAGGTA
* * *
36758925 AAAATGTAATTTTTGATAAGTTTAGGGGTA
1 AAAATGTAATTTTTGAAAAGTTTAAGGGTC
* *
36758955 AAAATGTAATTTTTG-AAAG-TAAGAGGGTT
1 AAAATGTAATTTTTGAAAAGTTTA-AGGGTC
* * ** *
36758984 AAAATGTGATTTTTG-GAAGCAT-GGGGT-
1 AAAATGTAATTTTTGAAAAGTTTAAGGGTC
* *
36759011 AAAATTGTGATTTTTG-GAAGTTTAAGGG-C
1 AAAA-TGTAATTTTTGAAAAGTTTAAGGGTC
*
36759040 AAAAATGTAA-TTTTGAGAAGTTTAAGGGTC
1 -AAAATGTAATTTTTGAAAAGTTTAAGGGTC
36759070 AAAATGTAATTTTT-AGAAAGTTTAAGGGTC
1 AAAATGTAATTTTTGA-AAAGTTTAAGGGTC
*
36759100 AAAATGTAATTTTTGAAAAGTTTGAGGGTC
1 AAAATGTAATTTTTGAAAAGTTTAAGGGTC
* * *
36759130 AAAATGTAATTTTTGAAACGTTTAAAGGTT
1 AAAATGTAATTTTTGAAAAGTTTAAGGGTC
*
36759160 AAAATGTAATTTTT-AGAAAGTTT-AGGGTT
1 AAAATGTAATTTTTGA-AAAGTTTAAGGGTC
* * * *
36759189 AAAGTGTAATTTTTGAAAAATTTGAGGGTAA
1 AAAATGTAATTTTTGAAAAGTTTAAGGGT-C
*
36759220 AAAATG--ATTTTT-AAAAGTTT-AGGGAC
1 AAAATGTAATTTTTGAAAAGTTTAAGGGTC
* *
36759246 AAAATATAATTTTTGGAAAAGTTTTAGGG
1 AAAATGTAATTTTT-GAAAAGTTTAAGGG
36759275 CCTTATAAAT
Statistics
Matches: 271, Mismatches: 29, Indels: 39
0.80 0.09 0.12
Matches are distributed among these distances:
26 5 0.02
27 8 0.03
28 40 0.15
29 84 0.31
30 124 0.46
31 10 0.04
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (30 bp):
AAAATGTAATTTTTGAAAAGTTTAAGGGTC
Found at i:36759890 original size:19 final size:19
Alignment explanation
Indices: 36759853--36759899 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
36759843 TGCTTTTTTA
*
36759853 TTATTT-TTTAATATATAT
1 TTATTTATTAAATATATAT
*
36759871 TTATTTATTAAATTTATAT
1 TTATTTATTAAATATATAT
*
36759890 TTATTAATTA
1 TTATTTATTA
36759900 TTATTTCTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATTTATTAAATATATAT
Found at i:36760026 original size:121 final size:121
Alignment explanation
Indices: 36759873--36760118 Score: 395
Period size: 121 Copynumber: 2.0 Consensus size: 121
36759863 ATATATATTT
*
36759873 ATTT-ATTAAATTTATATTTATTAATTATTATTTCTTAAAAAACATTTCATAATAAATGGTTATA
1 ATTTAATTAAATTTATATTTATTAATTATTATTTCTTAAAAAACATTTCATAATAAATGGTCATA
* * *
36759937 AATGGTTATAATAATGGAATAAATTAATGGATTAATGTACATTAAAACGTTTTGCA
66 AAAGGTTATAATAATGGAATAAATTAATGCATTAATGTACATTAAAACGTTTTGAA
* *
36759993 ATTTAATTAAATTTATATTTATTAATTATTATTTCTTTAAAAACGTTTCATAATAAATGGTCATA
1 ATTTAATTAAATTTATATTTATTAATTATTATTTCTTAAAAAACATTTCATAATAAATGGTCATA
** * *
36760058 AAAGGTTATAATAATGGAATAAATTGGTGCATTAATGTATATTAAAATGTTTTGAA
66 AAAGGTTATAATAATGGAATAAATTAATGCATTAATGTACATTAAAACGTTTTGAA
36760114 ATTTA
1 ATTTA
36760119 TATAATAAAC
Statistics
Matches: 115, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
120 4 0.03
121 111 0.97
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (121 bp):
ATTTAATTAAATTTATATTTATTAATTATTATTTCTTAAAAAACATTTCATAATAAATGGTCATA
AAAGGTTATAATAATGGAATAAATTAATGCATTAATGTACATTAAAACGTTTTGAA
Found at i:36760693 original size:6 final size:6
Alignment explanation
Indices: 36760682--36760775 Score: 65
Period size: 6 Copynumber: 16.3 Consensus size: 6
36760672 GGACATTATT
* ** * *
36760682 AATTTA AATTTA GAA--TA ATTTTA AATTTA AAAATA AGTTTA AACTTA
1 AATTTA AATTTA -AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
* *
36760729 AA-TTA AATTTA AATTTA AA-ATA AATTT- AATCTTA AA-ATA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AAT-TTA AATTTA AATTTA
36760774 AA
1 AA
36760776 AAATGGGTTT
Statistics
Matches: 67, Mismatches: 13, Indels: 16
0.70 0.14 0.17
Matches are distributed among these distances:
4 1 0.01
5 18 0.27
6 44 0.66
7 4 0.06
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (6 bp):
AATTTA
Found at i:36760704 original size:17 final size:17
Alignment explanation
Indices: 36760682--36760775 Score: 118
Period size: 17 Copynumber: 5.5 Consensus size: 17
36760672 GGACATTATT
*
36760682 AATTTAAATTTAGAATA
1 AATTTAAATTTAAAATA
*
36760699 ATTTTAAATTTAAAAATA
1 AATTTAAATTT-AAAATA
* * *
36760717 AGTTTAAACTTAAATTA
1 AATTTAAATTTAAAATA
36760734 AATTTAAATTTAAAATA
1 AATTTAAATTTAAAATA
36760751 AATTT-AATCTTAAAATA
1 AATTTAAAT-TTAAAATA
36760768 AATTTAAA
1 AATTTAAA
36760776 AAATGGGTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
16 3 0.05
17 47 0.71
18 16 0.24
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:36760776 original size:11 final size:12
Alignment explanation
Indices: 36760703--36760757 Score: 51
Period size: 11 Copynumber: 4.8 Consensus size: 12
36760693 AGAATAATTT
*
36760703 TAAATTTAAAAA
1 TAAATTTAAACA
* *
36760715 TAAGTTTAAACT
1 TAAATTTAAACA
**
36760727 TAAA-TTAAATT
1 TAAATTTAAACA
36760738 TAAATTTAAA-A
1 TAAATTTAAACA
36760749 TAAATTTAA
1 TAAATTTAA
36760758 TCTTAAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
11 19 0.53
12 17 0.47
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (12 bp):
TAAATTTAAACA
Found at i:36761082 original size:6 final size:6
Alignment explanation
Indices: 36761064--36761139 Score: 72
Period size: 6 Copynumber: 13.0 Consensus size: 6
36761054 TTAAATTGAT
36761064 TTTAAA TTT--A TTTAAA TTTAAA TTT--A TCTTAAA TTTAAA TTTAATTA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA TTTAA--A
* *
36761111 TTTAGA TTT-AC TTTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
36761140 ATAAAATTAA
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
4 6 0.10
5 5 0.09
6 40 0.69
7 2 0.03
8 5 0.09
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:36761095 original size:17 final size:16
Alignment explanation
Indices: 36761064--36761137 Score: 89
Period size: 17 Copynumber: 4.6 Consensus size: 16
36761054 TTAAATTGAT
*
36761064 TTTAAATTTATTTAAA
1 TTTAAATTTACTTAAA
36761080 TTTAAATTTATCTTAAA
1 TTTAAATTTA-CTTAAA
*
36761097 TTTAAATTTAATT--A
1 TTTAAATTTACTTAAA
*
36761111 TTTAGATTTACTTTAAA
1 TTTAAATTTAC-TTAAA
36761128 TTTAAATTTA
1 TTTAAATTTA
36761138 AAATAAAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
14 10 0.20
15 2 0.04
16 12 0.24
17 25 0.51
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (16 bp):
TTTAAATTTACTTAAA
Found at i:36761109 original size:11 final size:11
Alignment explanation
Indices: 36761054--36761139 Score: 57
Period size: 11 Copynumber: 7.5 Consensus size: 11
36761044 TAATTTGGAG
* *
36761054 TTAAATTGATT
1 TTAAATTTAAT
36761065 TTAAATTT-AT
1 TTAAATTTAAT
36761075 TTAAATTTAAAT
1 TTAAATTT-AAT
** *
36761087 TTATCTTAAAT
1 TTAAATTTAAT
36761098 TTAAATTTAATTAT
1 TTAAATTT-A--AT
* *
36761112 TTAGATTTACT
1 TTAAATTTAAT
36761123 TTAAATTTAAAT
1 TTAAATTT-AAT
36761135 TTAAA
1 TTAAA
36761140 ATAAAATTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
10 9 0.16
11 23 0.40
12 15 0.26
13 1 0.02
14 9 0.16
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:36761120 original size:31 final size:32
Alignment explanation
Indices: 36761064--36761138 Score: 100
Period size: 31 Copynumber: 2.3 Consensus size: 32
36761054 TTAAATTGAT
*
36761064 TTTAAATTTATTTAAATTTAAATTTA-TCTTAAA
1 TTTAAATTTAATT-AATTTAAATTTACT-TTAAA
*
36761097 TTTAAATTTAATT-ATTTAGATTTACTTTAAA
1 TTTAAATTTAATTAATTTAAATTTACTTTAAA
36761128 TTTAAATTTAA
1 TTTAAATTTAA
36761139 AATAAAATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
31 26 0.67
32 1 0.03
33 12 0.31
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (32 bp):
TTTAAATTTAATTAATTTAAATTTACTTTAAA
Found at i:36761144 original size:17 final size:16
Alignment explanation
Indices: 36761064--36761150 Score: 52
Period size: 17 Copynumber: 5.4 Consensus size: 16
36761054 TTAAATTGAT
**
36761064 TTTAAATTTATTTAAA
1 TTTAAATTTAAATAAA
**
36761080 TTTAAATTTATCTTAAA
1 TTTAAATTTA-AATAAA
*
36761097 TTTAAATTT-AAT-TA
1 TTTAAATTTAAATAAA
* **
36761111 TTTAGATTTACTTTAAA
1 TTTAAATTTA-AATAAA
36761128 TTTAAATTTAAAATAAA
1 TTTAAATTT-AAATAAA
*
36761145 ATTAAA
1 TTTAAA
36761151 ATACTAAACA
Statistics
Matches: 54, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
14 9 0.17
15 1 0.02
16 11 0.20
17 32 0.59
18 1 0.02
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (16 bp):
TTTAAATTTAAATAAA
Found at i:36761860 original size:3 final size:3
Alignment explanation
Indices: 36761854--36761892 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
36761844 AATATGATAT
*
36761854 TAA TAA TAA TAAA TAA TAA TAA TGA TAA TAA -AA TAA TAA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
36761893 AAAAGGGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:36761871 original size:28 final size:27
Alignment explanation
Indices: 36761838--36761893 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 27
36761828 GAAAGGTTTC
*
36761838 ATAATAA-ATATGATATTAATAATAATAA
1 ATAATAATA-ATGATAATAA-AATAATAA
36761866 ATAATAATAATGATAATAAAATAATAA
1 ATAATAATAATGATAATAAAATAATAA
36761893 A
1 A
36761894 AAAGGGAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 9 0.35
28 16 0.62
29 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (27 bp):
ATAATAATAATGATAATAAAATAATAA
Found at i:36762171 original size:25 final size:24
Alignment explanation
Indices: 36762143--36762208 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 24
36762133 TTTTTAAAAA
36762143 AAAATGAGAAAAACCAAAAGGAAAG
1 AAAA-GAGAAAAACCAAAAGGAAAG
** *
36762168 AAAA-AGAAAACAAAAAAAAGGGAAG
1 AAAAGAG-AAA-AACCAAAAGGAAAG
36762193 AAAAGAGAAGAAACCA
1 AAAAGAGAA-AAACCA
36762209 TACCTTGAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
23 2 0.06
24 3 0.09
25 24 0.75
26 3 0.09
ACGTcount: A:0.71, C:0.08, G:0.20, T:0.02
Consensus pattern (24 bp):
AAAAGAGAAAAACCAAAAGGAAAG
Found at i:36763031 original size:30 final size:30
Alignment explanation
Indices: 36762951--36763082 Score: 104
Period size: 30 Copynumber: 4.3 Consensus size: 30
36762941 CTCTGTAAGT
* * *
36762951 CCCTAAATTGTCCAAAAATTACATTTTGA-
1 CCCTAAATTTTTCTAAAATTACATTTTGAC
* ** *
36762980 CCTTAAAACTTTCTGAGAATTACATTTTGAC
1 CCCTAAATTTTTCT-AAAATTACATTTTGAC
*
36763011 CCCTAAATTTTTCTAAAATTATAATTTTTGAC
1 CCCTAAATTTTTCTAAAATTA-CA-TTTTGAC
* * * * *
36763043 CCCAAAACTTTTCCAAAATCATATTTTGAC
1 CCCTAAATTTTTCTAAAATTACATTTTGAC
*
36763073 CCCAAAATTT
1 CCCTAAATTT
36763083 CCAAAAAAAT
Statistics
Matches: 81, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
29 8 0.10
30 36 0.44
31 13 0.16
32 24 0.30
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (30 bp):
CCCTAAATTTTTCTAAAATTACATTTTGAC
Found at i:36763045 original size:32 final size:30
Alignment explanation
Indices: 36763003--36763082 Score: 106
Period size: 32 Copynumber: 2.6 Consensus size: 30
36762993 TGAGAATTAC
* * *
36763003 ATTTTGACCCCTAAATTTTTCTAAAATTAT
1 ATTTTGACCCCAAAATTTTTCCAAAATCAT
*
36763033 AATTTTTGACCCCAAAACTTTTCCAAAATCAT
1 -A-TTTTGACCCCAAAATTTTTCCAAAATCAT
36763065 ATTTTGACCCCAAAATTT
1 ATTTTGACCCCAAAATTT
36763083 CCAAAAAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
30 16 0.37
31 2 0.05
32 25 0.58
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (30 bp):
ATTTTGACCCCAAAATTTTTCCAAAATCAT
Found at i:36775065 original size:68 final size:68
Alignment explanation
Indices: 36774950--36775550 Score: 1013
Period size: 68 Copynumber: 8.8 Consensus size: 68
36774940 CTGACTGCTC
*
36774950 GAAATTGAAGTAGAGTTGGATAACACATCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCC
1 GAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCC
36775015 CCTT
65 CCTT
* *
36775019 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTTTGAAAATGAAGTAAGAGCAACGTCATCCC
1 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCCC
36775084 CTT
66 CTT
*
36775087 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCCT
1 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCCC
36775152 CTT
66 CTT
* *
36775155 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTAAAATTGAAGTAAGAGCAACGTCATCCT
1 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCCC
36775220 CTT
66 CTT
*
36775223 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCCT
1 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCCC
*
36775288 TTT
66 CTT
*
36775291 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAATGTCATCCC
1 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCCC
36775356 CTT
66 CTT
*
36775359 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAATGTCATCCC
1 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCCC
36775424 CTT
66 CTT
*
36775427 GAAATTGAAGCAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCCC
1 GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCCC
*
36775492 TTT
66 CTT
* * * **
36775495 GAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCTTCTGAAATTGAAGTAAGAG
1 GAAATTGAAGTAGAG-TGGATAACACGTCTTTAT-C-TCTGAAATTGAAGTAAGAG
36775551 TAAGACGAAG
Statistics
Matches: 508, Mismatches: 21, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
68 459 0.90
69 29 0.06
70 1 0.00
71 19 0.04
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (68 bp):
GAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATCCC
CTT
Found at i:36775128 original size:136 final size:136
Alignment explanation
Indices: 36774866--36775550 Score: 1046
Period size: 136 Copynumber: 4.9 Consensus size: 136
36774856 ATCATTTCCA
* * * * *
36774866 ATCCGCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAGGAGCAAA
1 ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
* * *
36774931 GATCTTTTCCTGACTGCTCGAAATTGAAGTAGAGTTGGATAACACATCTTTATCTCTGAAATTGA
66 G-TC--ATCC---C--CTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGA
36774996 AGTAAGAGCAACGTC
122 AGTAAGAGCAACGTC
* *
36775011 ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTTTGAAAATGAAGTAAGAGCAAC
1 ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
36775076 GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
66 GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
36775141 AACGTC
131 AACGTC
* *
36775147 ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTAAAATTGAAGTAAGAGCAAC
1 ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
*
36775212 GTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
66 GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
36775277 AACGTC
131 AACGTC
** *
36775283 ATCCTTTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAT
1 ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
36775348 GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
66 GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
*
36775413 AATGTC
131 AACGTC
*
36775419 ATCCCCTTGAAATTGAAGCAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
1 ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
* * * * **
36775484 GTCATCCCTTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCTTCTGAAATTGAAGTAAG
66 GTCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTAT-C-TCTGAAATTGAAGTAAG
36775549 AG
128 AG
36775551 TAAGACGAAG
Statistics
Matches: 507, Mismatches: 30, Indels: 12
0.92 0.05 0.02
Matches are distributed among these distances:
136 391 0.77
137 31 0.06
138 1 0.00
139 20 0.04
142 3 0.01
144 2 0.00
145 59 0.12
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (136 bp):
ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
AACGTC
Found at i:36775230 original size:204 final size:204
Alignment explanation
Indices: 36774866--36775550 Score: 1055
Period size: 204 Copynumber: 3.3 Consensus size: 204
36774856 ATCATTTCCA
* *
36774866 ATCCGCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAGGAGCAAA
1 ATCCCCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGAGCAAA
* *
36774931 GATCTTTTCCTGACTGCTCGAAATTGAAGTAGAGTTGGATAACACATCTTTATCTCTGAAATTGA
66 G-TC--ATCCT--CT--T-GAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGA
* *
36774996 AGTAAGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTTTGAAAA
122 AGTAAGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAAT
36775061 TGAAGTAAGAGCAACGTC
187 TGAAGTAAGAGCAACGTC
* * *
36775079 ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
1 ATCCCCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGAGCAAA
*
36775144 GTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTAAAATTGAAGTAAGAGC
66 GTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
*
36775209 AACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAG
131 AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAG
36775274 AGCAACGTC
196 AGCAACGTC
** * * *
36775283 ATCCTTTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAT
1 ATCCCCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGAGCAAA
*
36775348 GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
66 GTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
* *
36775413 AATGTCATCCCCTTGAAATTGAAGCAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAG
131 AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAG
36775478 AGCAACGTC
196 AGCAACGTC
* * * *
36775487 ATCCCTTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCTTCTGAAATTGAAGTAAGAG
1 ATCCCCTTGAAATTGAAGTAGAG-TGGATAACAAGTCTTCAT-C-TCTGAAATTGAAGTAAGAG
36775551 TAAGACGAAG
Statistics
Matches: 444, Mismatches: 25, Indels: 12
0.92 0.05 0.02
Matches are distributed among these distances:
204 325 0.73
205 29 0.07
206 2 0.00
207 19 0.04
208 2 0.00
210 4 0.01
212 2 0.00
213 61 0.14
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (204 bp):
ATCCCCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGAGCAAA
GTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAG
AGCAACGTC
Found at i:36775650 original size:92 final size:92
Alignment explanation
Indices: 36775493--36775750 Score: 480
Period size: 92 Copynumber: 2.8 Consensus size: 92
36775483 CGTCATCCCT
36775493 TTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCTTCTGAAATTGAAGTAAGAGTAAGACG
1 TTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCTTCTGAAATTGAAGTAAGAGTAAGACG
36775558 AAGCATCAACGTCATTTTCCTATCCTC
66 AAGCATCAACGTCATTTTCCTATCCTC
* *
36775585 TTGAAATTGAAGTAAAGCTGGAAAACAGGCCTTCGTCCTTCTGAAATTGAAGTAAGAGTAAGACG
1 TTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCTTCTGAAATTGAAGTAAGAGTAAGACG
36775650 AAGCATCAACGTCATTTTCCTATCCTC
66 AAGCATCAACGTCATTTTCCTATCCTC
* *
36775677 TTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCTTCTGAAATTGAAGTAAGAGTAAAATG
1 TTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCTTCTGAAATTGAAGTAAGAGTAAGACG
36775742 AAGCATCAA
66 AAGCATCAA
36775751 ACCTACTTTT
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 160 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (92 bp):
TTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCTTCTGAAATTGAAGTAAGAGTAAGACG
AAGCATCAACGTCATTTTCCTATCCTC
Found at i:36776035 original size:6 final size:6
Alignment explanation
Indices: 36776017--36776075 Score: 61
Period size: 6 Copynumber: 10.0 Consensus size: 6
36776007 TTAAATTGAT
* *
36776017 TTTAAA TTT--A TTTAAA TTTAAA TTTAATTA TTTAGA TTT-AC TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAA--A TTTAAA TTTAAA TTTAAA
36776064 TTTAAA TTTAAA
1 TTTAAA TTTAAA
36776076 ATAAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
4 4 0.09
5 3 0.07
6 32 0.73
8 5 0.11
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:36776045 original size:11 final size:11
Alignment explanation
Indices: 36776007--36776075 Score: 56
Period size: 11 Copynumber: 6.5 Consensus size: 11
36775997 TAATTTAGAG
* *
36776007 TTAAATTGATT
1 TTAAATTTAAT
36776018 TTAAATTT-AT
1 TTAAATTTAAT
36776028 TTAAATTTAAAT
1 TTAAATTT-AAT
36776040 TT-AA-TT-AT
1 TTAAATTTAAT
* *
36776048 TTAGATTTACT
1 TTAAATTTAAT
36776059 TTAAATTTAAAT
1 TTAAATTT-AAT
36776071 TTAAA
1 TTAAA
36776076 ATAAAATTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
8 4 0.09
9 1 0.02
10 13 0.28
11 17 0.37
12 11 0.24
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:36776966 original size:30 final size:30
Alignment explanation
Indices: 36776930--36777010 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
36776920 AATTATCTAG
**
36776930 AAATTACATTTTGACCCTAAAACTTTTTGA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
36776960 AAATTACATTTTGACCCT-AAACTTTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
* * *
36776989 AAATCATATTTTGACCCCAAAA
1 AAATTACATTTTGACCCTAAAA
36777011 TTTCAAAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
29 24 0.53
30 21 0.47
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (30 bp):
AAATTACATTTTGACCCTAAAACTTTTCCA
Found at i:36777059 original size:30 final size:29
Alignment explanation
Indices: 36777025--36777120 Score: 74
Period size: 30 Copynumber: 3.2 Consensus size: 29
36777015 AAAAAAAATC
36777025 CCATTTCTAACCCCGATTTCACTAAAATTA
1 CCATTT-TAACCCCGATTTCACTAAAATTA
* * *
36777055 CCATTTT-ACCCTCAAACTTCCCT-AAA-T-
1 CCATTTTAACCC-C-GATTTCACTAAAATTA
*
36777082 CCTATTTTTAACCCCGATTTCACCAAAATCTA
1 CC-A-TTTTAACCCCGATTTCACTAAAAT-TA
36777114 CCATTTT
1 CCATTTT
36777121 GCCCCCGAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 18
0.67 0.09 0.24
Matches are distributed among these distances:
27 2 0.04
28 11 0.22
29 13 0.26
30 20 0.40
31 2 0.04
32 2 0.04
ACGTcount: A:0.30, C:0.32, G:0.02, T:0.35
Consensus pattern (29 bp):
CCATTTTAACCCCGATTTCACTAAAATTA
Found at i:36778926 original size:21 final size:21
Alignment explanation
Indices: 36778888--36778928 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36778878 TATCAATTAA
* * *
36778888 TGAATTTTTTTTATATTTTTT
1 TGAATTTATTTAAAATTTTTT
36778909 TGAATTTATTTAAAATTTTT
1 TGAATTTATTTAAAATTTTT
36778929 AAATTGTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
TGAATTTATTTAAAATTTTTT
Found at i:36779127 original size:10 final size:10
Alignment explanation
Indices: 36779105--36779140 Score: 54
Period size: 11 Copynumber: 3.4 Consensus size: 10
36779095 GACAAGTTAA
36779105 ATAATTATTTT
1 ATAATT-TTTT
36779116 ATAATTTTTT
1 ATAATTTTTT
36779126 ATAATTTCTTT
1 ATAATTT-TTT
36779137 ATAA
1 ATAA
36779141 AAGTTAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 11 0.46
11 13 0.54
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:36779480 original size:22 final size:21
Alignment explanation
Indices: 36779442--36779482 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
36779432 GAGTCCTTGA
36779442 AAATTTTTAAAAATTTTAATT
1 AAATTTTTAAAAATTTTAATT
*
36779463 AAATTTTCTAAAAGTTTTAA
1 AAATTTT-TAAAAATTTTAA
36779483 AAATTTCAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
AAATTTTTAAAAATTTTAATT
Found at i:36779503 original size:30 final size:31
Alignment explanation
Indices: 36779441--36779514 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
36779431 TGAGTCCTTG
* * *
36779441 AAAATTTTTAAAAATTTTAATTAAATTTTCT
1 AAAAATTTTAAAAATTTCAAGTAAATTTTCT
*
36779472 AAAAGTTTTAAAAATTTCAAGTAAA-TTTCT
1 AAAAATTTTAAAAATTTCAAGTAAATTTTCT
36779502 AAAAATTTTAAAA
1 AAAAATTTTAAAA
36779515 GCTCTCATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 17 0.44
31 22 0.56
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (31 bp):
AAAAATTTTAAAAATTTCAAGTAAATTTTCT
Found at i:36779618 original size:3 final size:3
Alignment explanation
Indices: 36779610--36779637 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
36779600 TGATTAAACC
36779610 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
36779638 AATATTGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:36781142 original size:29 final size:29
Alignment explanation
Indices: 36781103--36781203 Score: 82
Period size: 29 Copynumber: 3.4 Consensus size: 29
36781093 CCCGGGGGGG
36781103 AAATGGTAATTTTGGTGTAATCGGGGTTAA
1 AAATGGTAATTTTGGTG-AATCGGGGTTAA
*** * * *
36781133 AAATGG-AATTTTAAAAGATTTGGGGGT-A
1 AAATGGTAATTTT-GGTGAATCGGGGTTAA
*
36781161 AAACGGTAATTTTTGGTGAAATCGGGGTTAA
1 AAATGGTAA-TTTTGGTG-AATCGGGGTTAA
36781192 AAATGG-AATTTT
1 AAATGGTAATTTT
36781204 AGAAGTTTTG
Statistics
Matches: 52, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
28 6 0.12
29 20 0.38
30 20 0.38
31 6 0.12
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.35
Consensus pattern (29 bp):
AAATGGTAATTTTGGTGAATCGGGGTTAA
Found at i:36781158 original size:58 final size:58
Alignment explanation
Indices: 36781096--36781251 Score: 224
Period size: 58 Copynumber: 2.7 Consensus size: 58
36781086 ATGGATACCC
* *
36781096 GGGGGGGAAATGGTAA-TTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATTT
1 GGGGGGAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAG-TTT
* * *
36781154 GGGGGTAAAACGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGTTT
1 GGGGGGAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGTTT
* * *
36781212 TGGGGGTAAATGGTAATTTTTGGTGAAATCGGGGTCAAAA
1 GGGGGGAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAA
36781252 TATAACTTTG
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
58 51 0.59
59 36 0.41
ACGTcount: A:0.32, C:0.03, G:0.33, T:0.32
Consensus pattern (58 bp):
GGGGGGAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGTTT
Found at i:36781190 original size:59 final size:58
Alignment explanation
Indices: 36781097--36781251 Score: 231
Period size: 59 Copynumber: 2.7 Consensus size: 58
36781087 TGGATACCCG
* * *
36781097 GGGGGGAAATGGTAA-TTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATTT
1 GGGGGTAAACGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATTT
* *
36781154 GGGGGTAAAACGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGTTTT
1 GGGGGT-AAACGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATTT
* *
36781213 GGGGGTAAATGGTAATTTTTGGTGAAATCGGGGTCAAAA
1 GGGGGTAAACGGTAATTTTTGGTGAAATCGGGGTTAAAA
36781252 TATAACTTTG
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
57 5 0.06
58 39 0.44
59 45 0.51
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.32
Consensus pattern (58 bp):
GGGGGTAAACGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATTT
Found at i:36781216 original size:29 final size:29
Alignment explanation
Indices: 36781125--36781221 Score: 79
Period size: 29 Copynumber: 3.3 Consensus size: 29
36781115 TGGTGTAATC
* *
36781125 GGGGTTAAAAATGGAATTTTAAAAGATTT
1 GGGGGTAAAAATGGAATTTTAGAAGATTT
* * ** * *
36781154 GGGGGT-AAAACGGTAATTTTTGGTGAAATC
1 GGGGGTAAAAATGG-AATTTTAGAAG-ATTT
* *
36781184 GGGGTTAAAAATGGAATTTTAGAAGTTTT
1 GGGGGTAAAAATGGAATTTTAGAAGATTT
36781213 GGGGGTAAA
1 GGGGGTAAA
36781222 TGGTAATTTT
Statistics
Matches: 48, Mismatches: 17, Indels: 6
0.68 0.24 0.08
Matches are distributed among these distances:
28 6 0.12
29 21 0.44
30 15 0.31
31 6 0.12
ACGTcount: A:0.35, C:0.02, G:0.31, T:0.32
Consensus pattern (29 bp):
GGGGGTAAAAATGGAATTTTAGAAGATTT
Found at i:36781218 original size:30 final size:30
Alignment explanation
Indices: 36781125--36781218 Score: 84
Period size: 30 Copynumber: 3.2 Consensus size: 30
36781115 TGGTGTAATC
*
36781125 GGGGTTAAAAATGGAATTTTAAAAGATTTG
1 GGGGTTAAAAATGGAATTTTAGAAGATTTG
* * ** ** *
36781155 GGGG-T-AAAACGGTAATTTTTGGTGAAATC
1 GGGGTTAAAAATGG-AATTTTAGAAGATTTG
*
36781184 GGGGTTAAAAATGGAATTTTAGAAGTTTTG
1 GGGGTTAAAAATGGAATTTTAGAAGATTTG
36781214 GGGGT
1 GGGGT
36781219 AAATGGTAAT
Statistics
Matches: 45, Mismatches: 16, Indels: 6
0.67 0.24 0.09
Matches are distributed among these distances:
28 6 0.13
29 14 0.31
30 19 0.42
31 6 0.13
ACGTcount: A:0.33, C:0.02, G:0.32, T:0.33
Consensus pattern (30 bp):
GGGGTTAAAAATGGAATTTTAGAAGATTTG
Found at i:36781271 original size:59 final size:57
Alignment explanation
Indices: 36781097--36781275 Score: 227
Period size: 59 Copynumber: 3.1 Consensus size: 57
36781087 TGGATACCCG
* * *
36781097 GGGGGGAAATGGTAA-TTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATTT
1 GGGGGTAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAAT-GAATTTTAAAAGTTTT
* *
36781154 GGGGGTAAAACGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGTTTT
1 GGGGGT-AAATGGTAATTTTTGGTGAAATCGGGGTTAAAAAT-GAATTTTAAAAGTTTT
* *
36781213 GGGGGTAAATGGTAATTTTTGGTGAAATCGGGGTCAAAATAT-AACTTTGGAAAAGTTTT
1 GGGGGTAAATGGTAATTTTTGGTGAAATCGGGGTTAAAA-ATGAA-TTT-TAAAAGTTTT
36781272 GGGG
1 GGGG
36781276 TCAAAATATA
Statistics
Matches: 108, Mismatches: 9, Indels: 8
0.86 0.07 0.06
Matches are distributed among these distances:
57 7 0.06
58 42 0.39
59 59 0.55
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (57 bp):
GGGGGTAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGAATTTTAAAAGTTTT
Found at i:36781276 original size:30 final size:30
Alignment explanation
Indices: 36781242--36781625 Score: 597
Period size: 30 Copynumber: 12.7 Consensus size: 30
36781232 TGGTGAAATC
* *
36781242 GGGGTCAAAATATAACTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
*
36781272 GGGGTCAAAATATAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
* *
36781302 AGGGTCAAAATGTGATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
*
36781332 GGGGTCAAAATGTGATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
36781362 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
*
36781392 GGGGTCAAAATGTGATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
36781422 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
36781452 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
* *
36781482 TGGGTCAAAATATAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
* * *
36781512 AGGGTTAAAATGTAATTTTGGAAACGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
*
36781542 GTGGTCAAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTC-AAAATGTAATTTTGGAAAAGTTTT
* *
36781573 GGGGTTAAAATATAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
* *
36781603 GGGGTTAAAATATAATTTCTGGA
1 GGGGTCAAAATGTAATTT-TGGA
36781626 CAATTTAGGG
Statistics
Matches: 331, Mismatches: 21, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
30 300 0.91
31 31 0.09
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.37
Consensus pattern (30 bp):
GGGGTCAAAATGTAATTTTGGAAAAGTTTT
Found at i:36782747 original size:3 final size:3
Alignment explanation
Indices: 36782722--36782773 Score: 59
Period size: 3 Copynumber: 16.7 Consensus size: 3
36782712 TTAAAAAATC
* *
36782722 TAT TAAT TAA TAT TAT TAG TAT TAT TAAT TAT TAT TAT TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
*
36782769 AAT TA
1 TAT TA
36782774 ATAAATCATT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 35 0.85
4 6 0.15
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:36783324 original size:20 final size:20
Alignment explanation
Indices: 36783301--36783338 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36783291 AGTAGCAGCA
*
36783301 GGAGCTGGTGGTCAGCAAAT
1 GGAGCTGGTGGCCAGCAAAT
*
36783321 GGAGTTGGTGGCCAGCAA
1 GGAGCTGGTGGCCAGCAA
36783339 CATAGGCACG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.16, G:0.42, T:0.18
Consensus pattern (20 bp):
GGAGCTGGTGGCCAGCAAAT
Found at i:36783526 original size:17 final size:16
Alignment explanation
Indices: 36783506--36783597 Score: 80
Period size: 17 Copynumber: 5.5 Consensus size: 16
36783496 GACTTTCTTT
36783506 TTAAATTTATAA-TAACA
1 TTAAATTTA-AATTAA-A
36783523 TTAAATTTAAATTAAA
1 TTAAATTTAAATTAAA
36783539 TTCAAATTTAAATTTAAA
1 TT-AAATTTAAA-TTAAA
* *
36783557 TTGAATTTAAAGTAAA
1 TTAAATTTAAATTAAA
*
36783573 TTTAAGA-TTAAAATAAA
1 -TTAA-ATTTAAATTAAA
*
36783590 TTTAATTT
1 TTAAATTT
36783598 TCAAATGGTT
Statistics
Matches: 64, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
15 1 0.02
16 14 0.22
17 41 0.64
18 8 0.12
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.43
Consensus pattern (16 bp):
TTAAATTTAAATTAAA
Found at i:36783532 original size:6 final size:6
Alignment explanation
Indices: 36783523--36783594 Score: 64
Period size: 6 Copynumber: 12.7 Consensus size: 6
36783513 TATAATAACA
* *
36783523 TTAAAT TTAAA- TTAAAT TCAAAT TTAAAT TTAAA- TTGAAT TTAAA-
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* *
36783568 GTAAAT TTAAGA- TTAAA- ATAAAT TTAA
1 TTAAAT TTAA-AT TTAAAT TTAAAT TTAA
36783595 TTTTCAAATG
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
5 18 0.34
6 34 0.64
7 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.42
Consensus pattern (6 bp):
TTAAAT
Found at i:36783538 original size:11 final size:11
Alignment explanation
Indices: 36783522--36783597 Score: 82
Period size: 11 Copynumber: 6.8 Consensus size: 11
36783512 TTATAATAAC
36783522 ATTAAATTTAA
1 ATTAAATTTAA
*
36783533 ATTAAATTCAA
1 ATTAAATTTAA
36783544 ATTTAAATTTAA
1 A-TTAAATTTAA
*
36783556 ATTGAATTTAA
1 ATTAAATTTAA
*
36783567 AGTAAATTTAA
1 ATTAAATTTAA
*
36783578 GATTAAA-ATAA
1 -ATTAAATTTAA
*
36783589 ATTTAATTT
1 ATTAAATTT
36783598 TCAAATGGTT
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
10 5 0.09
11 33 0.62
12 15 0.28
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.43
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:36790060 original size:4 final size:5
Alignment explanation
Indices: 36790022--36790063 Score: 50
Period size: 5 Copynumber: 8.0 Consensus size: 5
36790012 AGGAGATAAA
36790022 AAAAG AAGAAG AAGAAG AAAAAG AAAAG AAAAG -AAAG AAAAG
1 AAAAG AA-AAG AA-AAG -AAAAG AAAAG AAAAG AAAAG AAAAG
36790064 GTCAAGATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 4 0.12
5 16 0.47
6 12 0.35
7 2 0.06
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:36790114 original size:15 final size:15
Alignment explanation
Indices: 36790096--36790151 Score: 60
Period size: 16 Copynumber: 3.6 Consensus size: 15
36790086 GGCATCCTTT
*
36790096 AAAAGGAAAAAAAGA
1 AAAAAGAAAAAAAGA
*
36790111 AAAAAGAAAAGAAGA
1 AAAAAGAAAAAAAGA
36790126 AGAAAAGAAAAAGGAAG-
1 A-AAAAGAAAAA--AAGA
36790143 AAAAAGAAA
1 AAAAAGAAA
36790152 GTCAAGATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 14 0.40
16 17 0.49
17 1 0.03
18 3 0.09
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAAAGA
Found at i:36790131 original size:16 final size:15
Alignment explanation
Indices: 36790103--36790151 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 15
36790093 TTTAAAAGGA
36790103 AAAAAAGAA-AAAAG
1 AAAAAAGAAGAAAAG
36790117 AAAAGAAGAAGAAAAG
1 AAAA-AAGAAGAAAAG
*
36790133 AAAAAGGAAGAAAAAG
1 AAAAAAGAAG-AAAAG
36790149 AAA
1 AAA
36790152 GTCAAGATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 4 0.13
15 10 0.32
16 17 0.55
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAGAAAAG
Found at i:36790166 original size:88 final size:89
Alignment explanation
Indices: 36790020--36790186 Score: 263
Period size: 88 Copynumber: 1.9 Consensus size: 89
36790010 AGAGGAGATA
36790020 AAAAAAGAAGAAGAAGAAGAAAAAGAAAAGAAAAGAAAGAAAAGGTCAAGATGAAAACCCGCAAA
1 AAAAAAGAAGAAGAAGAAGAAAAAGAAAAGAAAAGAAAGAAAAGGTCAAGATGAAAACCCGCAAA
36790085 GGGCATCCTTTAAAAGGAAAAAAAG
66 GGGCAT-CTTTAAAAGGAAAAAAAG
36790110 AAAAAAGAA-AAGAAGAAG-AAAAGAAAAAGGAAGAA-AAAG-AAA-GTCAAGATGAAAACCCGC
1 AAAAAAGAAGAAGAAGAAGAAAAAG-AAAA-GAA-AAGAAAGAAAAGGTCAAGATGAAAACCCGC
36790170 AAAGGGCATCTTTAAAA
63 AAAGGGCATCTTTAAAA
36790187 ATCTATATAT
Statistics
Matches: 74, Mismatches: 0, Indels: 9
0.89 0.00 0.11
Matches are distributed among these distances:
87 8 0.11
88 32 0.43
89 16 0.22
90 16 0.22
91 2 0.03
ACGTcount: A:0.62, C:0.09, G:0.22, T:0.07
Consensus pattern (89 bp):
AAAAAAGAAGAAGAAGAAGAAAAAGAAAAGAAAAGAAAGAAAAGGTCAAGATGAAAACCCGCAAA
GGGCATCTTTAAAAGGAAAAAAAG
Found at i:36792500 original size:22 final size:24
Alignment explanation
Indices: 36792474--36792519 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
36792464 AATTCCTTTA
*
36792474 AATCCCTT-TATATT-TTGTTTTT
1 AATCCATTCTATATTATTGTTTTT
*
36792496 AATCCATTCTATTTTATTGTTTTT
1 AATCCATTCTATATTATTGTTTTT
36792520 TTAATGGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 7 0.35
23 5 0.25
24 8 0.40
ACGTcount: A:0.20, C:0.13, G:0.04, T:0.63
Consensus pattern (24 bp):
AATCCATTCTATATTATTGTTTTT
Found at i:36796464 original size:31 final size:30
Alignment explanation
Indices: 36796428--36796496 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
36796418 CCCTCAACAT
* * *
36796428 TTTTAAAAA-TTCTAATTAAATTTTCTGAAAG
1 TTTTAAAAATTTC-AAGTAAA-TTTCTAAAAA
*
36796459 TTTTAAATATTTCAAGTAAATTTCTAAAAA
1 TTTTAAAAATTTCAAGTAAATTTCTAAAAA
36796489 TTTTAAAA
1 TTTTAAAA
36796497 CCTCTCATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
30 15 0.47
31 14 0.44
32 3 0.09
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (30 bp):
TTTTAAAAATTTCAAGTAAATTTCTAAAAA
Found at i:36798173 original size:17 final size:16
Alignment explanation
Indices: 36798160--36798239 Score: 110
Period size: 17 Copynumber: 5.0 Consensus size: 16
36798150 AATTTTAAGT
*
36798160 TTTATTTAGATTTAAA
1 TTTATTTAAATTTAAA
36798176 TTTATCTTAAATTTAAA
1 TTTAT-TTAAATTTAAA
36798193 TTTATTT--ATTTAAA
1 TTTATTTAAATTTAAA
36798207 TTTACTTTAAATTTAAA
1 TTTA-TTTAAATTTAAA
*
36798224 TTTAATTAAATTTAAA
1 TTTATTTAAATTTAAA
36798240 AATAATATTA
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
14 11 0.19
15 3 0.05
16 18 0.31
17 26 0.45
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (16 bp):
TTTATTTAAATTTAAA
Found at i:36798207 original size:31 final size:32
Alignment explanation
Indices: 36798160--36798239 Score: 110
Period size: 31 Copynumber: 2.5 Consensus size: 32
36798150 AATTTTAAGT
36798160 TTTATTTAGATTTAAATTTA-TCTTAAATTTAAA
1 TTTATTTA-ATTTAAATTTACT-TTAAATTTAAA
36798193 TTTATTT-ATTTAAATTTACTTTAAATTTAAA
1 TTTATTTAATTTAAATTTACTTTAAATTTAAA
*
36798224 TTTAATTAAATTTAAA
1 TTT-ATTTAATTTAAA
36798240 AATAATATTA
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
31 25 0.58
32 4 0.09
33 14 0.33
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (32 bp):
TTTATTTAATTTAAATTTACTTTAAATTTAAA
Found at i:36798230 original size:11 final size:11
Alignment explanation
Indices: 36798136--36798257 Score: 76
Period size: 11 Copynumber: 11.1 Consensus size: 11
36798126 GACTTTGATT
*
36798136 TTTAAGTTTAA
1 TTTAAATTTAA
* *
36798147 ATTAATTTTAA
1 TTTAAATTTAA
*
36798158 GTTT-TATTTAGA
1 -TTTAAATTTA-A
36798170 TTTAAATTT-A
1 TTTAAATTTAA
36798180 TCTTAAATTTAAA
1 T-TTAAATTT-AA
36798193 TTT--ATTT-A
1 TTTAAATTTAA
*
36798201 TTTAAATTTAC
1 TTTAAATTTAA
36798212 TTTAAATTTAAA
1 TTTAAATTT-AA
*
36798224 TTT-AATTAAA
1 TTTAAATTTAA
**
36798234 TTTAAAAATAA
1 TTTAAATTTAA
36798245 TATTAAATTTAA
1 T-TTAAATTTAA
36798257 T
1 T
36798258 AAATTAAAAT
Statistics
Matches: 85, Mismatches: 14, Indels: 23
0.70 0.11 0.19
Matches are distributed among these distances:
8 4 0.05
10 15 0.18
11 42 0.49
12 22 0.26
13 2 0.02
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:36798256 original size:6 final size:6
Alignment explanation
Indices: 36798136--36798239 Score: 69
Period size: 6 Copynumber: 18.0 Consensus size: 6
36798126 GACTTTGATT
* * * * *
36798136 TTTAAG TTTAAA -TTAAT TTTAAG TTT-TA TTTAGA TTTAAA TTT--A
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
36798180 TCTTAAA TTTAAA TTTATTTA TTTAAA TTT-AC TTTAAA TTTAAA TTT-AA
1 T-TTAAA TTTAAA TTTA--AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
36798229 -TTAAA TTTAAA
1 TTTAAA TTTAAA
36798240 AATAATATTA
Statistics
Matches: 77, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
4 4 0.05
5 17 0.22
6 49 0.64
7 2 0.03
8 5 0.06
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:36800007 original size:161 final size:162
Alignment explanation
Indices: 36799761--36800104 Score: 503
Period size: 161 Copynumber: 2.1 Consensus size: 162
36799751 TTTAATTGGC
* * * * * *
36799761 TTTCAATTTAGTCCTATGACTGTTTGACTGTACCAGAGGTTGCCACGTGTCATTTTTTGGTCTAT
1 TTTCAAATTAGTCCTTTGACTATTTGACTGCACCAGAGGTTGCCACGTGTCAGTTTTTGGCCTAT
* *
36799826 CTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAATTTTTATTTA
66 CTATGCATCTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAACTTTTATTTA
* * *
36799891 ATTACAAAATTGGCCCAATAATTTTTCAAGGT
131 ATTACAAAATTGGCCCAAAAATTTTCCAAGAT
*
36799923 TTAT-AAATTAGTCCTTTGACTATTTGACTGCACTAGAGGTTGCCACGTGTC-GTTTTTGGCCTA
1 TT-TCAAATTAGTCCTTTGACTATTTGACTGCACCAGAGGTTGCCACGTGTCAGTTTTTGGCCTA
* * * *
36799986 TTTATGCATCTAGTCCTTTCTATTTTTAATTTATTTTAATTTAGTCCTTAAATTAACTTTTATTT
65 TCTATGCATCTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAACTTTTATTT
*
36800051 AATTACAAAATTGGTCCAAAAATTTTCCAAGAT
130 AATTACAAAATTGGCCCAAAAATTTTCCAAGAT
*
36800084 TTTCAAATTAGTCCCTTGACT
1 TTTCAAATTAGTCCTTTGACT
36800105 TCTGGATGCC
Statistics
Matches: 162, Mismatches: 18, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
160 1 0.01
161 116 0.72
162 44 0.27
163 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46
Consensus pattern (162 bp):
TTTCAAATTAGTCCTTTGACTATTTGACTGCACCAGAGGTTGCCACGTGTCAGTTTTTGGCCTAT
CTATGCATCTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAACTTTTATTTA
ATTACAAAATTGGCCCAAAAATTTTCCAAGAT
Found at i:36800213 original size:30 final size:30
Alignment explanation
Indices: 36800178--36800502 Score: 363
Period size: 30 Copynumber: 10.9 Consensus size: 30
36800168 AAATTGTCCA
* *
36800178 AAAATTACATTTCGACCCCAAAAC-TTTCTA
1 AAAATTACATTTTGACCCCAAAACTTTTC-C
* * *
36800208 AAAATTATACTTTGACCCTAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
36800238 AAAATTACATTTTGACCCCTAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* *
36800268 AAAATTATATTTTGACCTCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
36800298 AAAATTACATTTCGACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* *
36800328 AAAATTATATTTTGACCCCAAAAC-TTTCTA
1 AAAATTACATTTTGACCCCAAAACTTTTC-C
** * *
36800358 AAAATTGTATTTTGACCCCGAAAC-TTTCTA
1 AAAATTACATTTTGACCCCAAAACTTTTC-C
*
36800388 AAAATTACATTTTAACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
36800418 AAAATTACATTTTGACTCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* * * * * *
36800448 AAAATTATACTTTAACCTCGAAAC-TTTCA
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
36800477 AAAATTACCATTTT-ACCCCCAAACTT
1 AAAATTA-CATTTTGACCCCAAAACTT
36800503 CCTTAAATCC
Statistics
Matches: 252, Mismatches: 38, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
29 23 0.09
30 221 0.88
31 8 0.03
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.35
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCAAAACTTTTCC
Found at i:36800331 original size:90 final size:89
Alignment explanation
Indices: 36800178--36800502 Score: 404
Period size: 90 Copynumber: 3.6 Consensus size: 89
36800168 AAATTGTCCA
* * * *
36800178 AAAATTACATTTCGACCCCAAAACTTTCTAAAAATTATACTTTGACCCTAAAACTTTTCCAAAAT
1 AAAATTATATTTTGACCCCAAAACTTTCTAAAAATTACA-TTTGACCCCAAAACTTTTCCAAAAT
*
36800243 TACATTTTGACCCCTAAACTTTTCC
65 TACATTTTGACCCCAAAACTTTTCC
* *
36800268 AAAATTATATTTTGACCTCAAAACTTT-TCCAAAATTACATTTCGACCCCAAAACTTTTCCAAAA
1 AAAATTATATTTTGACCCCAAAACTTTCT-AAAAATTACATTT-GACCCCAAAACTTTTCCAAAA
* *
36800332 TTATATTTTGACCCCAAAAC-TTTCTA
64 TTACATTTTGACCCCAAAACTTTTC-C
* * *
36800358 AAAATTGTATTTTGACCCCGAAACTTTCTAAAAATTACATTTTAACCCCAAAACTTTTCCAAAAT
1 AAAATTATATTTTGACCCCAAAACTTTCTAAAAATTACA-TTTGACCCCAAAACTTTTCCAAAAT
*
36800423 TACATTTTGACTCCAAAACTTTTCC
65 TACATTTTGACCCCAAAACTTTTCC
* * * * * *
36800448 AAAATTATACTTTAACCTCGAAACTTTC-AAAAATTACCATTTTACCCCCAAACTT
1 AAAATTATATTTTGACCCCAAAACTTTCTAAAAATTA-CATTTGACCCCAAAACTT
36800503 CCTTAAATCC
Statistics
Matches: 205, Mismatches: 23, Indels: 15
0.84 0.09 0.06
Matches are distributed among these distances:
89 30 0.15
90 167 0.81
91 8 0.04
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.35
Consensus pattern (89 bp):
AAAATTATATTTTGACCCCAAAACTTTCTAAAAATTACATTTGACCCCAAAACTTTTCCAAAATT
ACATTTTGACCCCAAAACTTTTCC
Found at i:36800538 original size:59 final size:58
Alignment explanation
Indices: 36800475--36800671 Score: 200
Period size: 59 Copynumber: 3.4 Consensus size: 58
36800465 TCGAAACTTT
*
36800475 CAAAAATTACCATTTTACCCCCAAAC-TTCCTTAAATCCCATTTTTAACCCCGATTTCAC
1 CAAAAATTACCATTTTACCCCCAAACTTTCC--AAATTCCATTTTTAACCCCGATTTCAC
* * * * * * * ** * **
36800534 CAAAACTTACCGTTTTGCCTCCGAACTTTCCAAAATTTCATTTTTGACCTTGTTTTTGC
1 CAAAAATTACCATTTTACCCCCAAACTTTCC-AAATTCCATTTTTAACCCCGATTTCAC
* * *
36800593 CAAAATTTACCATTTTATTCCCCAAACTTTCCAAATTCCATTTTTAGCCCCGATTTCA-
1 CAAAAATTACCATTTTA-CCCCCAAACTTTCCAAATTCCATTTTTAACCCCGATTTCAC
36800651 CAAAAATTACCATTTTACCCC
1 CAAAAATTACCATTTTACCCC
36800672 TAAAAACCCA
Statistics
Matches: 106, Mismatches: 30, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
57 3 0.03
58 16 0.15
59 72 0.68
60 15 0.14
ACGTcount: A:0.29, C:0.30, G:0.05, T:0.37
Consensus pattern (58 bp):
CAAAAATTACCATTTTACCCCCAAACTTTCCAAATTCCATTTTTAACCCCGATTTCAC
Found at i:36810180 original size:38 final size:38
Alignment explanation
Indices: 36810129--36810258 Score: 113
Period size: 38 Copynumber: 3.4 Consensus size: 38
36810119 CCTATCCTCT
*
36810129 TGAAATTGAAGTAAAGCTGGATATGAAGTCTTTATCTC
1 TGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTC
* * ** *
36810167 TGAAATTGAAGTAAGAG-T-AAGATCATTTC-CTATCCTC
1 TGAAATTGAAGTAA-AGCTGGATATCAAGTCTTTAT-CTC
* * *
36810204 TTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTATC
1 -TGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATC--TC
36810245 TGAAATTGAAGTAA
1 TGAAATTGAAGTAA
36810259 GAGTAAGATG
Statistics
Matches: 69, Mismatches: 15, Indels: 14
0.70 0.15 0.14
Matches are distributed among these distances:
36 3 0.04
37 11 0.16
38 29 0.42
39 9 0.13
40 15 0.22
41 2 0.03
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (38 bp):
TGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTC
Found at i:36810337 original size:37 final size:36
Alignment explanation
Indices: 36810296--36810652 Score: 148
Period size: 37 Copynumber: 9.4 Consensus size: 36
36810286 CTTATCCTCT
36810296 TGAAATTGAAGTAAGTTGGATAACAAGTCTTCATCTC
1 TGAAATTGAAGTAAG-TGGATAACAAGTCTTCATCTC
** *
36810333 TGAAATTGAAGT-A--GGAGCA-AAGATCATTTCCAATCCGC
1 TGAAATTGAAGTAAGTGGATAACAAG-TC--TT-C-AT-CTC
36810371 TTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTC
1 -TGAAATTGAAGTA-AGTGGATAACAAGTCTTCATCTC
** *
36810409 TGAAATTGAAGT-A--GGAGCA-AAGATCATTTCCAATCCGC
1 TGAAATTGAAGTAAGTGGATAACAAG-TC--TT-C-AT-CTC
36810447 TTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTC
1 -TGAAATTGAAGTA-AGTGGATAACAAGTCTTCATCTC
** *
36810485 TGAAATTGAAGT-A--GGAGCA-AAGATCATTTCCAATCCAC
1 TGAAATTGAAGTAAGTGGATAACAAG-TC--TT-C-AT-CTC
* *
36810523 TTGAAATTGAAGTAGAGAGAGATAACAAGTCTTTATCTC
1 -TGAAATTGAAGTA-AGTG-GATAACAAGTCTTCATCTC
* * * ** *
36810562 TGAAATTGAAGTAAG-AG-CAAGATCTTTTCCTATCCTC
1 TGAAATTGAAGTAAGTGGATAACAAGTCTT-C-AT-CTC
* * *
36810599 TTGAAATTGAAGTAGAGTGAGATAACGAGTCTTTATCTT
1 -TGAAATTGAAGTA-AGTG-GATAACAAGTCTTCATCTC
36810638 TGAAATTGAAGTAAG
1 TGAAATTGAAGTAAG
36810653 AGCAAGATCT
Statistics
Matches: 240, Mismatches: 35, Indels: 90
0.66 0.10 0.25
Matches are distributed among these distances:
32 9 0.04
33 18 0.08
34 6 0.03
35 9 0.04
36 6 0.03
37 49 0.20
38 49 0.20
39 46 0.19
40 6 0.03
41 8 0.03
42 7 0.03
43 13 0.05
44 11 0.05
45 3 0.01
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.29
Consensus pattern (36 bp):
TGAAATTGAAGTAAGTGGATAACAAGTCTTCATCTC
Found at i:36810382 original size:39 final size:39
Alignment explanation
Indices: 36810333--36810688 Score: 195
Period size: 38 Copynumber: 9.3 Consensus size: 39
36810323 TCTTCATCTC
*
36810333 TGAAATTGAAGTAGGAGCAAAGATCATTTCCAATCCGCT
1 TGAAATTGAAGTAGGAGCAAAGATCATTTCCAATCCTCT
* * *
36810372 TGAAATTGAAGTAGAGTGGATA-A-CAAGTCTT-C-AT-CTC-
1 TGAAATTGAAGTAG-GAGCAAAGATC-A-T-TTCCAATCCTCT
*
36810409 TGAAATTGAAGTAGGAGCAAAGATCATTTCCAATCCGCT
1 TGAAATTGAAGTAGGAGCAAAGATCATTTCCAATCCTCT
* * *
36810448 TGAAATTGAAGTAGAGTGGATA-A-CAAGTCTT-C-AT-CTC-
1 TGAAATTGAAGTAG-GAGCAAAGATC-A-T-TTCCAATCCTCT
*
36810485 TGAAATTGAAGTAGGAGCAAAGATCATTTCCAATCCACT
1 TGAAATTGAAGTAGGAGCAAAGATCATTTCCAATCCTCT
* ** **
36810524 TGAAATTGAAGTA-GAG-AGAGATAACAAGTCTTTAT-CTC-
1 TGAAATTGAAGTAGGAGCAAAGAT--CATTTC-CAATCCTCT
* * *
36810562 TGAAATTGAAGTAAGAGC-AAGATCTTTTCCTATCCTCT
1 TGAAATTGAAGTAGGAGCAAAGATCATTTCCAATCCTCT
36810600 TGAAATTGAAGTAGAGTGAG-ATAACGAGTC-TTT---AT-CT-T
1 TGAAATTGAAGT--AG-GAGCA-AA-GA-TCATTTCCAATCCTCT
* * * *
36810638 TGAAATTGAAGTAAGAGC-AAGATCTTTTCCTATCCTTT
1 TGAAATTGAAGTAGGAGCAAAGATCATTTCCAATCCTCT
36810676 TGAAATTGAAGTA
1 TGAAATTGAAGTA
36810689 AAGCTGGATA
Statistics
Matches: 247, Mismatches: 29, Indels: 83
0.69 0.08 0.23
Matches are distributed among these distances:
32 2 0.01
33 5 0.02
34 2 0.01
35 7 0.03
36 18 0.07
37 49 0.20
38 67 0.27
39 64 0.26
40 17 0.07
41 7 0.03
42 2 0.01
43 5 0.02
44 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (39 bp):
TGAAATTGAAGTAGGAGCAAAGATCATTTCCAATCCTCT
Found at i:36810402 original size:76 final size:75
Alignment explanation
Indices: 36810276--36810790 Score: 692
Period size: 76 Copynumber: 6.8 Consensus size: 75
36810266 ATGAAGCACT
** *
36810276 AAGATCATTTCTTATCCTCTTGAAATTGAAGTA-AGTTGGATAACAAGTCTTCATCTCTGAAATT
1 AAGATCATTTCCAATCCTCTTGAAATTGAAGTAGAG-TGGATAACAAGTCTTTATCTCTGAAATT
*
36810340 GAAGTAGGAGC
65 GAAGTAAGAGC
* *
36810351 AAAGATCATTTCCAATCCGCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTCTGAAATT
1 -AAGATCATTTCCAATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATT
*
36810416 GAAGTAGGAGC
65 GAAGTAAGAGC
* *
36810427 AAAGATCATTTCCAATCCGCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTCTGAAATT
1 -AAGATCATTTCCAATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATT
*
36810492 GAAGTAGGAGC
65 GAAGTAAGAGC
* *
36810503 AAAGATCATTTCCAATCCACTTGAAATTGAAGTAGAGAGAGATAACAAGTCTTTATCTCTGAAAT
1 -AAGATCATTTCCAATCCTCTTGAAATTGAAGTAGAGTG-GATAACAAGTCTTTATCTCTGAAAT
36810568 TGAAGTAAGAGC
64 TGAAGTAAGAGC
* * * *
36810580 AAGATCTTTTCCTATCCTCTTGAAATTGAAGTAGAGTGAGATAACGAGTCTTTATCTTTGAAATT
1 AAGATCATTTCCAATCCTCTTGAAATTGAAGTAGAGTG-GATAACAAGTCTTTATCTCTGAAATT
36810645 GAAGTAAGAGC
65 GAAGTAAGAGC
* * * * ** * *
36810656 AAGATCTTTTCCTATCCTTTTGAAATTGAAGTAAAGCTGGATATTACGTCTTTATCTCTGAAACT
1 AAGATCATTTCCAATCCTCTTGAAATTGAAGTAGAG-TGGATAACAAGTCTTTATCTCTGAAATT
36810721 GAAGTAAGAGC
65 GAAGTAAGAGC
* * *
36810732 AAGATC-TCTTCCCATCCTCTTGAAATTGAAGTAAAGTTGGATAGCAAGTCTTTATCTCT
1 AAGATCAT-TTCCAATCCTCTTGAAATTGAAGTAGAG-TGGATAACAAGTCTTTATCTCT
36810791 CTAAAGAGCA
Statistics
Matches: 408, Mismatches: 27, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
75 1 0.00
76 368 0.90
77 39 0.10
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (75 bp):
AAGATCATTTCCAATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATTG
AAGTAAGAGC
Found at i:36810604 original size:38 final size:38
Alignment explanation
Indices: 36810485--36810765 Score: 186
Period size: 38 Copynumber: 7.4 Consensus size: 38
36810475 TCTTCATCTC
* * * *
36810485 TGAAATTGAAGTAGGAGCAAAGATCATTTCCAATCCACT
1 TGAAATTGAAGTAAGAGC-AAGATCTTTTCCTATCCTCT
*** *
36810524 TGAAATTGAAGT-AGAG-AGAGATAACAAGTCTTTAT-CTC-
1 TGAAATTGAAGTAAGAGCA-AGAT--CTTTTC-CTATCCTCT
36810562 TGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCT
1 TGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCT
** *** *
36810600 TGAAATTGAAGT-AGAGTGAGATAACGAGTCTTTAT-CT-T
1 TGAAATTGAAGTAAGAGCAAGAT--CTTTTC-CTATCCTCT
*
36810638 TGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTTT
1 TGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCT
** * * *
36810676 TGAAATTGAAGTAA-AGCTGGATATTACGTCTTTAT-CTC-
1 TGAAATTGAAGTAAGAGCAAGATCTT--TTC-CTATCCTCT
* * *
36810714 TGAAACTGAAGTAAGAGCAAGATCTCTTCCCATCCTCT
1 TGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCT
36810752 TGAAATTGAAGTAA
1 TGAAATTGAAGTAA
36810766 AGTTGGATAG
Statistics
Matches: 185, Mismatches: 37, Indels: 41
0.70 0.14 0.16
Matches are distributed among these distances:
36 9 0.05
37 36 0.19
38 81 0.44
39 50 0.27
40 9 0.05
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.32
Consensus pattern (38 bp):
TGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCT
Found at i:36810681 original size:228 final size:228
Alignment explanation
Indices: 36810109--36810790 Score: 755
Period size: 228 Copynumber: 2.9 Consensus size: 228
36810099 CAGACCAAAC
* * * ** *
36810109 AAGATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATGAAGTCTTTATCTCTGAAATT
1 AAGATCATTTCCAATCCGCTTGAAATTGAAGTAGAG-TGGATAACAAGTCTTCATCTCTGAAATT
* * * * * * *
36810174 GAAGTAAGAG-TAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTT
65 GAAGTAAGAGCAAAGATCATTTCCAATCCGCTTGAAATTGAAGTAAAGCTGGATAACAAGTCTTC
* * **
36810238 GTCTATCTGAAATTGAAGTAAGAGTAAGATGAAGCACTAAGATCATTTCTTATCCTCTTGAAATT
130 ATC--TCTGAAACT---G--A-AGT-A-A-G-AG--C-AAGATCATTTCCAATCCTCTTGAAATT
* *
36810303 GAAGTAAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAGGAGCA
180 GAAGTAAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCA
36810352 AAGATCATTTCCAATCCGCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTCTGAAATTG
1 AAGATCATTTCCAATCCGCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTCTGAAATTG
* *
36810417 AAGTAGGAGCAAAGATCATTTCCAATCCGCTTGAAATTGAAGTAGAG-TGGATAACAAGTCTTCA
66 AAGTAAGAGCAAAGATCATTTCCAATCCGCTTGAAATTGAAGTAAAGCTGGATAACAAGTCTTCA
* * * *
36810481 TCTCTGAAATTGAAGTAGGAGCAAAGATCATTTCCAATCCACTTGAAATTGAAGTAGAG-AGAGA
131 TCTCTGAAACTGAAGTAAGAGC-AAGATCATTTCCAATCCTCTTGAAATTGAAGTA-AGTTG-GA
36810545 TAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGC-
193 TAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCA
* * * * * *
36810580 AAGATCTTTTCCTATCCTCTTGAAATTGAAGTAGAGTGAGATAACGAGTCTTTATCTTTGAAATT
1 AAGATCATTTCCAATCCGCTTGAAATTGAAGTAGAGTG-GATAACAAGTCTTCATCTCTGAAATT
* * ** ** * *
36810645 GAAGTAAGAGC-AAGATCTTTTCCTATCCTTTTGAAATTGAAGTAAAGCTGGATATTACGTCTTT
65 GAAGTAAGAGCAAAGATCATTTCCAATCCGCTTGAAATTGAAGTAAAGCTGGATAACAAGTCTTC
*
36810709 ATCTCTGAAACTGAAGTAAGAGCAAGATC-TCTTCCCATCCTCTTGAAATTGAAGTAAAGTTGGA
130 ATCTCTGAAACTGAAGTAAGAGCAAGATCAT-TTCCAATCCTCTTGAAATTGAAGT-AAGTTGGA
*
36810773 TAGCAAGTCTTTATCTCT
193 TAACAAGTCTTTATCTCT
36810791 CTAAAGAGCA
Statistics
Matches: 387, Mismatches: 44, Indels: 31
0.84 0.10 0.07
Matches are distributed among these distances:
227 1 0.00
228 147 0.38
229 105 0.27
230 2 0.01
231 1 0.00
233 1 0.00
234 3 0.01
235 1 0.00
237 1 0.00
240 9 0.02
242 49 0.13
243 67 0.17
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (228 bp):
AAGATCATTTCCAATCCGCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTCATCTCTGAAATTG
AAGTAAGAGCAAAGATCATTTCCAATCCGCTTGAAATTGAAGTAAAGCTGGATAACAAGTCTTCA
TCTCTGAAACTGAAGTAAGAGCAAGATCATTTCCAATCCTCTTGAAATTGAAGTAAGTTGGATAA
CAAGTCTTTATCTCTGAAATTGAAGTAAGAGCA
Found at i:36811104 original size:17 final size:16
Alignment explanation
Indices: 36811091--36811159 Score: 75
Period size: 16 Copynumber: 4.0 Consensus size: 16
36811081 AATTTTAAGT
*
36811091 TTTATTTAGATTTAAA
1 TTTATTTAAATTTAAA
36811107 TTTATCTTAAATTTAAATTTA
1 TTTAT-TTAAATTT-AA---A
36811128 TTTATTTAAATTTAAA
1 TTTATTTAAATTTAAA
*
36811144 TTTAATTAAATTTAAA
1 TTTATTTAAATTTAAA
36811160 AATAATATTA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
16 21 0.46
17 7 0.15
18 2 0.04
19 2 0.04
20 8 0.17
21 6 0.13
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (16 bp):
TTTATTTAAATTTAAA
Found at i:36811138 original size:20 final size:20
Alignment explanation
Indices: 36811091--36811147 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
36811081 AATTTTAAGT
*
36811091 TTTATTTAGATTTAAATTTA
1 TTTATTTAAATTTAAATTTA
*
36811111 --T-CTTAAATTTAAATTTA
1 TTTATTTAAATTTAAATTTA
36811128 TTTATTTAAATTTAAATTTA
1 TTTATTTAAATTTAAATTTA
36811148 ATTAAATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 14 0.45
18 1 0.03
19 1 0.03
20 15 0.48
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTATTTAAATTTAAATTTA
Found at i:36811176 original size:6 final size:6
Alignment explanation
Indices: 36811067--36811159 Score: 63
Period size: 6 Copynumber: 16.0 Consensus size: 6
36811057 GACTTTGATT
* * * * *
36811067 TTTAAG TTTAAA -TTAAT TTTAAG TTT-TA TTTAGA TTTAAA TTT--A
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
36811111 TCTTAAA TTTAAA TTTATTTA TTTAAA TTTAAA TTT-AA -TTAAA TTTAAA
1 T-TTAAA TTTAAA TTTA--AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
36811160 AATAATATTA
Statistics
Matches: 69, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
4 4 0.06
5 13 0.19
6 45 0.65
7 2 0.03
8 5 0.07
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:36811270 original size:27 final size:28
Alignment explanation
Indices: 36811199--36811268 Score: 124
Period size: 28 Copynumber: 2.5 Consensus size: 28
36811189 CAATGTCCAT
*
36811199 TTAC-AAAAGCCCAAATTAAAGGTCCGA
1 TTACAAAAAGCCCAAATTAAAGGCCCGA
36811226 TTACAAAAAGCCCAAATTAAAGGCCCGA
1 TTACAAAAAGCCCAAATTAAAGGCCCGA
36811254 TTACAAAAAGCCCAA
1 TTACAAAAAGCCCAA
36811269 TTGGGCTTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 4 0.10
28 37 0.90
ACGTcount: A:0.47, C:0.24, G:0.13, T:0.16
Consensus pattern (28 bp):
TTACAAAAAGCCCAAATTAAAGGCCCGA
Found at i:36813021 original size:161 final size:162
Alignment explanation
Indices: 36812766--36813109 Score: 512
Period size: 161 Copynumber: 2.1 Consensus size: 162
36812756 TTTAATTGGC
* * * * *
36812766 TTTCAATTTAGTCCTATGACTGTTTGACTGTACCAAAGGTTGCCACGTGTCATTTTTTGGTCTAT
1 TTTCAAATTAGTCCTTTGACTGTTTGACTGCACCAAAGGTTGCCACGTGTCAGTTTTTGGCCTAT
*
36812831 CTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAATTTTTATTTA
66 CTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAACTTTTATTTA
* * *
36812896 ATTACAAAATTGGCCCAATAATTTTTCAAGGT
131 ATTACAAAATTGGCCCAAAAATTTTCCAAGAT
*
36812928 TTAT-AAATTAGTCCTTTGACTGTTTGACTGCACTAAAGGTTGCCACGTGTC-GTTTTTGGCCTA
1 TT-TCAAATTAGTCCTTTGACTGTTTGACTGCACCAAAGGTTGCCACGTGTCAGTTTTTGGCCTA
* * * *
36812991 TTTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTAGTCCTTAAATTAACTTTTATTT
65 TCTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAACTTTTATTT
* *
36813056 AATTACAAAATTGGTCCAAAAATTTTCCATGAT
130 AATTACAAAATTGGCCCAAAAATTTTCCAAGAT
*
36813089 TTTCAAATTAGTCCCTTGACT
1 TTTCAAATTAGTCCTTTGACT
36813110 TCTGGATGCC
Statistics
Matches: 163, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
160 1 0.01
161 116 0.71
162 45 0.28
163 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.46
Consensus pattern (162 bp):
TTTCAAATTAGTCCTTTGACTGTTTGACTGCACCAAAGGTTGCCACGTGTCAGTTTTTGGCCTAT
CTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAACTTTTATTTA
ATTACAAAATTGGCCCAAAAATTTTCCAAGAT
Found at i:36813218 original size:30 final size:29
Alignment explanation
Indices: 36813184--36813597 Score: 425
Period size: 30 Copynumber: 13.9 Consensus size: 29
36813174 AATTGTCCAG
* *
36813184 AAATTACATTTTGACCCCACAACTTTCTGA
1 AAATTACATTTTGACCCCAAAACTTT-TAA
* **
36813214 AAATTATATTTTGACTTCAAAACTTTTTAA
1 AAATTACATTTTGACCCCAAAAC-TTTTAA
* *
36813244 AAATTACATTTTGACCCCTAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTT-AA
* * *
36813274 AAATTATATTTTAACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTT-AA
* *
36813304 AAATTACATTTCGACCCTAAAACTTTCTAA
1 AAATTACATTTTGACCCCAAAACTTT-TAA
* *
36813334 AAATTATATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTT-AA
36813364 AAATTACATTTTGACCCCAAAACTTTCTAA
1 AAATTACATTTTGACCCCAAAACTTT-TAA
* * **
36813394 AAATTATATTTTAACCCTGAAACTTTCTAA
1 AAATTACATTTTGACCCCAAAACTTT-TAA
** *
36813424 AAATTACATTTTGACCTTAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTT-AA
*
36813454 AAATTATATTTTGACCCCAAAACTTTCTAA
1 AAATTACATTTTGACCCCAAAACTTT-TAA
*
36813484 AAATTACATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTT-AA
* *
36813514 AAATTACATTTTGACTCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTT-AA
* * * * *
36813544 AAATTATACTTTAACCCCGAAACTTTCAA
1 AAATTACATTTTGACCCCAAAACTTTTAA
*
36813573 AAATTACCATTTT-ACCCCCAAACTT
1 AAATTA-CATTTTGACCCCAAAACTT
36813598 CCCTAAATCC
Statistics
Matches: 325, Mismatches: 50, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
29 25 0.08
30 294 0.90
31 6 0.02
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.36
Consensus pattern (29 bp):
AAATTACATTTTGACCCCAAAACTTTTAA
Found at i:36813265 original size:90 final size:90
Alignment explanation
Indices: 36813169--36813589 Score: 514
Period size: 90 Copynumber: 4.7 Consensus size: 90
36813159 CTTTGTAAGT
* * * * *
36813169 CCCTAAA-TTGTCCAGAAATTACATTTTGACCCCACAACTTTCTGAAAATTATATTTTGA-CTTC
1 CCCTAAACTTTTCCA-AAATTACATTTTGACCCCAAAACTTTCTAAAAATTACATTTTGACCCT-
*
36813232 AAAACTTTTTAAAAATTACATTTTGAC
64 AAAACTTTCTAAAAATTACATTTTGAC
* * * *
36813259 CCCTAAACTTTTCCAAAATTATATTTTAACCCCAAAACTTT-TCCAAAATTACATTTCGACCCTA
1 CCCTAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCT-AAAAATTACATTTTGACCCTA
*
36813323 AAACTTTCTAAAAATTATATTTTGAC
65 AAACTTTCTAAAAATTACATTTTGAC
* * * *
36813349 CCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCTAAAAATTATATTTTAACCCTGA
1 CCCTAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCTAAAAATTACATTTTGACCCTAA
36813414 AACTTTCTAAAAATTACATTTTGA-
66 AACTTTCTAAAAATTACATTTTGAC
* * *
36813438 CCTTAAAACTTTTCCAAAATTATATTTTGACCCCAAAACTTTCTAAAAATTACATTTTGACCCCA
1 CCCT-AAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCTAAAAATTACATTTTGACCCTA
*
36813503 AAACTTT-TCCAAAATTACATTTTGAC
65 AAACTTTCT-AAAAATTACATTTTGAC
* * * * * *
36813529 TCCAAAACTTTTCCAAAATTATACTTTAACCCCGAAACTTTC-AAAAATTACCATTTT-ACCC
1 CCCTAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCTAAAAATTA-CATTTTGACCC
36813590 CCAAACTTCC
Statistics
Matches: 290, Mismatches: 33, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
89 16 0.06
90 264 0.91
91 10 0.03
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.36
Consensus pattern (90 bp):
CCCTAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTCTAAAAATTACATTTTGACCCTAA
AACTTTCTAAAAATTACATTTTGAC
Found at i:36813633 original size:59 final size:58
Alignment explanation
Indices: 36813570--36813766 Score: 216
Period size: 59 Copynumber: 3.4 Consensus size: 58
36813560 CCGAAACTTT
* **
36813570 CAAAAATTACCATTTTACCCCCAAACTTCCCTAAATCCCATTTTTAACCCCGATTTCAC
1 CAAAAATTACCATTTTACCCCCAAACTTTCC-AAATTTCATTTTTAACCCCGATTTCAC
* * * * * ** * **
36813629 CAAAACTTACCGTTTTACCTCCGAACTTTCCAAAATTTCATTTTTGACCTTGTTTTTGC
1 CAAAAATTACCATTTTACCCCCAAACTTTCC-AAATTTCATTTTTAACCCCGATTTCAC
* * *
36813688 CAAAATTTACCATTTTATTCCCCAAACTTTCCAAATTTCATTTTTAGCCCCGATTTCA-
1 CAAAAATTACCATTTTA-CCCCCAAACTTTCCAAATTTCATTTTTAACCCCGATTTCAC
36813746 CAAAAATTACCATTTTACCCC
1 CAAAAATTACCATTTTACCCC
36813767 TAAAAACCCA
Statistics
Matches: 109, Mismatches: 28, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
57 3 0.03
58 16 0.15
59 79 0.72
60 11 0.10
ACGTcount: A:0.29, C:0.30, G:0.04, T:0.37
Consensus pattern (58 bp):
CAAAAATTACCATTTTACCCCCAAACTTTCCAAATTTCATTTTTAACCCCGATTTCAC
Found at i:36815881 original size:103 final size:108
Alignment explanation
Indices: 36815738--36815956 Score: 288
Period size: 111 Copynumber: 2.0 Consensus size: 108
36815728 AAACTAAAAG
* *
36815738 AAAAACAATGAAAACTTCAATAACTACTTTCATTCCATACAAA-T-AC-ATA-GCATTCT-TATT
1 AAAAACAATGAAAACTTCAATAACTACATTCATTACATACAAAGTCACAATAGGCATT-TGTATT
* *
36815798 TTATTGAAAACACACCAGCACTATAATACTAAGAATTAATTCAC
65 TTATTGAAAACACACCAGCACAATAATACTAAAAATTAATTCAC
* *
36815842 AAAAAC-ATGAAAACTTCAATCACTACATTCATTACATACAAATGCGTCGGCAATAGGCATTTGT
1 AAAAACAATGAAAACTTCAATAACTACATTCATTACATACAAA---GTC-ACAATAGGCATTTGT
*
36815906 ATTTTATTGAAAACACACCAGCACAATAATACTAAAAATTACTTCAC
62 ATTTTATTGAAAACACACCAGCACAATAATACTAAAAATTAATTCAC
36815953 AAAA
1 AAAA
36815957 GCCAACACGG
Statistics
Matches: 99, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
103 33 0.33
104 6 0.06
107 1 0.01
109 1 0.01
110 4 0.04
111 54 0.55
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.28
Consensus pattern (108 bp):
AAAAACAATGAAAACTTCAATAACTACATTCATTACATACAAAGTCACAATAGGCATTTGTATTT
TATTGAAAACACACCAGCACAATAATACTAAAAATTAATTCAC
Found at i:36818894 original size:7 final size:7
Alignment explanation
Indices: 36818882--36818944 Score: 53
Period size: 7 Copynumber: 9.4 Consensus size: 7
36818872 TTGTATCTAA
36818882 ATTTAAT
1 ATTTAAT
36818889 ATTTAAT
1 ATTTAAT
*
36818896 CTTT-AT
1 ATTTAAT
*
36818902 GCTTTAAT
1 -ATTTAAT
*
36818910 TTTTAAT
1 ATTTAAT
36818917 A--TAA-
1 ATTTAAT
36818921 ATTTAAT
1 ATTTAAT
36818928 ATTTAAT
1 ATTTAAT
*
36818935 TTTTAAT
1 ATTTAAT
36818942 ATT
1 ATT
36818945 ATTAAGCCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
4 1 0.02
5 3 0.07
6 5 0.11
7 35 0.76
8 2 0.04
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.59
Consensus pattern (7 bp):
ATTTAAT
Found at i:36818897 original size:18 final size:18
Alignment explanation
Indices: 36818876--36818934 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
36818866 CTTTTATTGT
36818876 ATCTAAATTTAATATTTA
1 ATCTAAATTTAATATTTA
** *
36818894 ATCTTTATGCTTTAATTTTTA
1 ATC--TA-AATTTAATATTTA
*
36818915 ATATAAATTTAATATTTA
1 ATCTAAATTTAATATTTA
36818933 AT
1 AT
36818935 TTTTAATATT
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
18 15 0.48
19 2 0.06
20 2 0.06
21 12 0.39
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (18 bp):
ATCTAAATTTAATATTTA
Found at i:36818941 original size:14 final size:14
Alignment explanation
Indices: 36818883--36818944 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
36818873 TGTATCTAAA
*
36818883 TTTAATATTTAATC
1 TTTAATATTTAATT
*
36818897 TTT-ATGCTTTAATT
1 TTTAAT-ATTTAATT
*
36818911 TTTAATA--TAA-A
1 TTTAATATTTAATT
36818922 TTTAATATTTAATT
1 TTTAATATTTAATT
36818936 TTTAATATT
1 TTTAATATT
36818945 ATTAAGCCAT
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
11 7 0.18
12 3 0.08
13 5 0.13
14 21 0.55
15 2 0.05
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (14 bp):
TTTAATATTTAATT
Found at i:36819857 original size:8 final size:8
Alignment explanation
Indices: 36819844--36819877 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
36819834 AGTGGATATC
36819844 TATTTTAT
1 TATTTTAT
36819852 TATTTTAT
1 TATTTTAT
36819860 TATTTTAT
1 TATTTTAT
36819868 TATTTT-T
1 TATTTTAT
36819875 TAT
1 TAT
36819878 AATTTCTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 4 0.15
8 22 0.85
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:36819887 original size:11 final size:11
Alignment explanation
Indices: 36819863--36819901 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
36819853 ATTTTATTAT
*
36819863 TTTATTATTT-
1 TTTATAATTTC
36819873 TTTATAATTTC
1 TTTATAATTTC
36819884 TTTATAATTTC
1 TTTATAATTTC
36819895 TTTATAA
1 TTTATAA
36819902 AAGAAATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTATAATTTC
Found at i:36820351 original size:22 final size:21
Alignment explanation
Indices: 36820313--36820353 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
36820303 GAGTCCCTGA
36820313 AAATTTTTAAAAATTTTAATT
1 AAATTTTTAAAAATTTTAATT
*
36820334 AAATTTTCTAAAAGTTTTAA
1 AAATTTT-TAAAAATTTTAA
36820354 AAATTTCAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
AAATTTTTAAAAATTTTAATT
Found at i:36820352 original size:31 final size:29
Alignment explanation
Indices: 36820312--36820384 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 29
36820302 TGAGTCCCTG
* *
36820312 AAAATTTTTAAAAATTTTAATTAAATTTTCT
1 AAAA-TTTTAAAAATTTCAAGTAAA-TTTCT
36820343 AAAAGTTTTAAAAATTTCAAGTAAATTTCT
1 AAAA-TTTTAAAAATTTCAAGTAAATTTCT
*
36820373 GAAATTTTAAAA
1 AAAATTTTAAAA
36820385 GCTCTCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 8 0.21
30 8 0.21
31 22 0.58
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (29 bp):
AAAATTTTAAAAATTTCAAGTAAATTTCT
Found at i:36821502 original size:23 final size:24
Alignment explanation
Indices: 36821459--36821507 Score: 91
Period size: 23 Copynumber: 2.1 Consensus size: 24
36821449 TTGAGATAAT
36821459 GACAACATCAATAAAAAAAATTAA
1 GACAACATCAATAAAAAAAATTAA
36821483 GACAACATCAAT-AAAAAAATTAA
1 GACAACATCAATAAAAAAAATTAA
36821506 GA
1 GA
36821508 AAAAACTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.65, C:0.12, G:0.06, T:0.16
Consensus pattern (24 bp):
GACAACATCAATAAAAAAAATTAA
Found at i:36824073 original size:31 final size:30
Alignment explanation
Indices: 36824038--36824106 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
36824028 GCCTCAACAT
* * *
36824038 TTTTAAAAA-TTCTAATTAAATTTTCTGAAAG
1 TTTTAAAAATTTC-AAGTAAA-TTTCTAAAAA
*
36824069 TTTTAAATATTTCAAGTAAATTTCTAAAAA
1 TTTTAAAAATTTCAAGTAAATTTCTAAAAA
36824099 TTTTAAAA
1 TTTTAAAA
36824107 CCTCTCATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
30 15 0.47
31 14 0.44
32 3 0.09
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (30 bp):
TTTTAAAAATTTCAAGTAAATTTCTAAAAA
Found at i:36825726 original size:22 final size:20
Alignment explanation
Indices: 36825690--36825730 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 20
36825680 AATGAATAAA
36825690 GGAGAAGGAAAAGAAAGAAG
1 GGAGAAGGAAAAGAAAGAAG
36825710 GGAGAAAGGAAAAAGAAAGAA
1 GGAG-AAGG-AAAAGAAAGAA
36825731 AATCTCCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.21
21 4 0.21
22 11 0.58
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (20 bp):
GGAGAAGGAAAAGAAAGAAG
Found at i:36826043 original size:18 final size:18
Alignment explanation
Indices: 36826003--36826036 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36825993 ACGGTTTGTT
36826003 AATTTAATTTAGCAATTA
1 AATTTAATTTAGCAATTA
36826021 AATTTAATTTAG-AATT
1 AATTTAATTTAGCAATT
36826037 TGTATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (18 bp):
AATTTAATTTAGCAATTA
Found at i:36827734 original size:6 final size:6
Alignment explanation
Indices: 36827725--36827770 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
36827715 TGAAAAATGA
*
36827725 GAGAGG GAGATG GAGATG GAGATG GAGATG GAGATG GAGATG GAGA
1 GAGATG GAGATG GAGATG GAGATG GAGATG GAGATG GAGATG GAGA
36827771 ATTTTTCAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.35, C:0.00, G:0.52, T:0.13
Consensus pattern (6 bp):
GAGATG
Found at i:36827845 original size:32 final size:32
Alignment explanation
Indices: 36827809--36827873 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
36827799 TGTTTTATTG
* *
36827809 TCCCAGACACTTTTTATGAAAAATATAGGGAT
1 TCCCAAACACTTTTTATGAAAAATAGAGGGAT
36827841 TCCCAAACACTTTTTATGAAAAATAGAGGGAT
1 TCCCAAACACTTTTTATGAAAAATAGAGGGAT
36827873 T
1 T
36827874 AATTAACATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (32 bp):
TCCCAAACACTTTTTATGAAAAATAGAGGGAT
Found at i:36828382 original size:15 final size:16
Alignment explanation
Indices: 36828357--36828402 Score: 67
Period size: 15 Copynumber: 2.9 Consensus size: 16
36828347 AGTTAATTAG
*
36828357 ATAATTATTTTTTAAT
1 ATAATTATTTTTTAAA
36828373 ATAA-TATTTTTTAAA
1 ATAATTATTTTTTAAA
*
36828388 ATAATTATTTGTTAA
1 ATAATTATTTTTTAA
36828403 CTTTATTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
ATAATTATTTTTTAAA
Found at i:36829389 original size:3 final size:3
Alignment explanation
Indices: 36829381--36829412 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
36829371 GTTGATTAAA
36829381 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
36829413 GAATAGTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:36830198 original size:89 final size:88
Alignment explanation
Indices: 36830095--36830360 Score: 406
Period size: 89 Copynumber: 3.0 Consensus size: 88
36830085 GTGTATCCTA
* * *
36830095 AATAAGATTATTGTACATTGATATTATTTATTTAGTTATGTTTTACTTCTTAAATTAAAAAATTA
1 AATAAGTTTCTTGTACATTGATATTATTTACTTAGTTATGTTTTACTTCTTAAATTAAAAAATTA
*
36830160 CTTATCTCATGCTTTTTTGCAATT
66 CTTATC-CATGCTTTTTTGCAACT
* *
36830184 AATAAGTTTCTTGTACATTGATATTATTTACTTACTTATGTTTTACTTCTTAAATTAAAAAACTA
1 AATAAGTTTCTTGTACATTGATATTATTTACTTAGTTATGTTTTACTTCTTAAATTAAAAAATTA
* *
36830249 CTTTTCCCATGCTTTTTTACAACT
66 CTTAT-CCATGCTTTTTTGCAACT
* *
36830273 AATAAGTTTCTTGTACATTGATATTATTTACTTAGTTATGTTTTTCTTCTTGAATTAAAAAATTA
1 AATAAGTTTCTTGTACATTGATATTATTTACTTAGTTATGTTTTACTTCTTAAATTAAAAAATTA
*
36830338 ATTATCCTATGCTTTTTTGCAAC
66 CTTATCC-ATGCTTTTTTGCAAC
36830361 AAATGACTAC
Statistics
Matches: 160, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
88 2 0.01
89 157 0.98
90 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.50
Consensus pattern (88 bp):
AATAAGTTTCTTGTACATTGATATTATTTACTTAGTTATGTTTTACTTCTTAAATTAAAAAATTA
CTTATCCATGCTTTTTTGCAACT
Found at i:36831387 original size:264 final size:263
Alignment explanation
Indices: 36830799--36831833 Score: 1253
Period size: 264 Copynumber: 3.9 Consensus size: 263
36830789 TTATCTAATG
*
36830799 ATGACTTCAGGAGGAACTTCAACTA-TCGGAATC-AAGTTCTATGCAAACTACTTATATGACTTC
1 ATGACTTCAGGAGAAACTTCAACTACT-GGAA-CAAAGTTCTATGCAAACTACTTATATGACTTC
* *
36830862 AAAGGTAATTGAAAAGTCTTGC---ATTATTATTAGAATAGTAATTTGATTCAAATTGAATCATT
64 AAGGGTAATTGAAAAGTCTTGCAATATTATTATTAGAATAGTAATTTGATTCAAATTGAATTATT
* * *
36830924 TTAAATTAATTTTTTTAGGCTCGACTTTAGATAAGTTATATTTAACTTTCAGGTGTATTCTAAAT
129 TTAAATTAATTTTTTTAGGCTCGACTTTAGATAAATTATATTTAACTTTCAAGTGTATCCTAAAT
* *
36830989 AAGTTTCTTGTACATTAATATTATTTACTTAAATT-TAAAAACTACTTATCCCATGTTTTTTTGC
194 AAGTTTCTTGTACATTGATATTATTTACTTAAATTAAAAAAACTACTTATCCCATGTTTTTTTGC
36831053 AACTA
259 AACTA
* *
36831058 ATGACTTTAGGAGAAACTTCAACTACTGGAACAAAGTTCTATGCCAACTACTTATATGACTTCAA
1 ATGACTTCAGGAGAAACTTCAACTACTGGAACAAAGTTCTATGCAAACTACTTATATGACTTCAA
36831123 GGGTAATTGAAAAGTCTTGCAATATTATTATTAGAATAGTAATTTGATTCAAATTGAATTATTTT
66 GGGTAATTGAAAAGTCTTGCAATATTATTATTAGAATAGTAATTTGATTCAAATTGAATTATTTT
* *
36831188 AAATT-A-TTTTTTAGGCTCGACTTTAGAATAAATTATATTTAACTATCAAATGTATCCTAAATA
131 AAATTAATTTTTTTAGGCTCGACTTTAG-ATAAATTATATTTAACTTTCAAGTGTATCCTAAATA
*
36831251 AGTTTCTTGTGCATTGATATTATTTACTTAAATTAAAAAAACTACTTATCCCATGTTTTTTTTTG
195 AGTTTCTTGTACATTGATATTATTTACTTAAATTAAAAAAACTACTTATCCCATG--TTTTTTTG
36831316 CAACTA
258 CAACTA
* *
36831322 ATGACTTCAGGAGGAACTTCAACTACTGGAACAAAGTTCTATGCCAACTACTTATATGACTTCAA
1 ATGACTTCAGGAGAAACTTCAACTACTGGAACAAAGTTCTATGCAAACTACTTATATGACTTCAA
* *
36831387 GAGTAATTGAAAAGTCTTGCATTATTATTATTAGAATAGTAATTTGATTCAAATTGAATTATTTT
66 GGGTAATTGAAAAGTCTTGCAATATTATTATTAGAATAGTAATTTGATTCAAATTGAATTATTTT
* *
36831452 GAATTAATTTATTTTAGGCTCAACTTTAGATAAATTATATTTAACTTTCAAGTGTATCCTAAATA
131 AAATTAATTT-TTTTAGGCTCGACTTTAGATAAATTATATTTAACTTTCAAGTGTATCCTAAATA
* ** * *
36831517 AGTTTCTTCTATGTTGATATTATTTACTTAGTTATGTTTTTCTTCTTAAATTAAAAATTACTTAT
195 AGTTTCTTGTACATTGATATTATTTACTTA---A----------ATT-AA--AAAAACTACTTAT
*
36831582 CCTATGCTTTTTTTGCAACTA
244 CCCATG-TTTTTTTGCAACTA
* * * *
36831603 ATGACTTCAGGATAAACTTC-A--ACTGAAACCAATTTCTATGCAAACTACTTATATGACTTCAA
1 ATGACTTCAGGAGAAACTTCAACTACTGGAACAAAGTTCTATGCAAACTACTTATATGACTTC-A
* ** * *
36831665 AGGCGGAA---CCAAGTTCTATGCAAACTACTTATATGACTT-CAATGGTAA-TTGAAAGTCTTG
65 AGG-GTAATTGAAAAG-TCT-TGC-AA-TA-TTAT-T-A-TTAGAATAGTAATTTG--A---TT-
*
36831725 CAAAATTGAATTATTTTAAATTGA-TTTTTTAGGCT-GAACTTTAGATAAATTATATTTAACTTT
115 C-AAATTGAATTATTTTAAATTAATTTTTTTAGGCTCG-ACTTTAGATAAATTATATTTAACTTT
36831788 CAAGTGTATCCTAAATAAGTTTCTTGTACATT-ATATTATTTACTTA
178 CAAGTGTATCCTAAATAAGTTTCTTGTACATTGATATTATTTACTTA
36831834 GTTATGTTTT
Statistics
Matches: 682, Mismatches: 48, Indels: 64
0.86 0.06 0.08
Matches are distributed among these distances:
258 1 0.00
259 77 0.11
260 21 0.03
261 64 0.09
262 65 0.10
264 144 0.21
265 1 0.00
266 62 0.09
267 17 0.02
269 1 0.00
277 3 0.00
278 38 0.06
279 8 0.01
280 7 0.01
281 34 0.05
282 21 0.03
283 4 0.01
284 8 0.01
285 3 0.00
287 14 0.02
288 66 0.10
289 3 0.00
290 20 0.03
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.41
Consensus pattern (263 bp):
ATGACTTCAGGAGAAACTTCAACTACTGGAACAAAGTTCTATGCAAACTACTTATATGACTTCAA
GGGTAATTGAAAAGTCTTGCAATATTATTATTAGAATAGTAATTTGATTCAAATTGAATTATTTT
AAATTAATTTTTTTAGGCTCGACTTTAGATAAATTATATTTAACTTTCAAGTGTATCCTAAATAA
GTTTCTTGTACATTGATATTATTTACTTAAATTAAAAAAACTACTTATCCCATGTTTTTTTGCAA
CTA
Found at i:36834729 original size:28 final size:30
Alignment explanation
Indices: 36834673--36834734 Score: 85
Period size: 28 Copynumber: 2.1 Consensus size: 30
36834663 GAATTCTTTT
*
36834673 AAATAATTTTAAAATATAAATTAATTACGA
1 AAATAATTTTAAAATATAAATTAAATACGA
36834703 AAATAA-TTTAAAGA-A-AAATTAAATACGA
1 AAATAATTTTAAA-ATATAAATTAAATACGA
36834731 AAAT
1 AAAT
36834735 TATATAAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 16 0.53
29 7 0.23
30 7 0.23
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (30 bp):
AAATAATTTTAAAATATAAATTAAATACGA
Found at i:36835382 original size:15 final size:16
Alignment explanation
Indices: 36835354--36835388 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
36835344 ATTTATAGTC
*
36835354 AATTAATTATAATAAT
1 AATTAATTAGAATAAT
36835370 AATT-ATTAGAATAAT
1 AATTAATTAGAATAAT
36835385 AATT
1 AATT
36835389 TGATTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (16 bp):
AATTAATTAGAATAAT
Found at i:36835662 original size:11 final size:11
Alignment explanation
Indices: 36835646--36835759 Score: 72
Period size: 11 Copynumber: 10.0 Consensus size: 11
36835636 GACCGATCCC
36835646 TTTTAAATTTA
1 TTTTAAATTTA
*
36835657 TTTTAAGATTAA
1 TTTTAA-ATTTA
* *
36835669 ATTT-ATTTTAA
1 TTTTAAATTT-A
* *
36835680 ATTTAGATTTA
1 TTTTAAATTTA
36835691 TTTTAAATTTAAA
1 TTTTAAATTT--A
*
36835704 TTTCAAA-TTA
1 TTTTAAATTTA
36835714 GTTTTAAATTTAA
1 -TTTTAAATTT-A
*
36835727 ATTT-AATTTAA
1 TTTTAAATTT-A
*
36835738 GTTTAAATTTA
1 TTTTAAATTTA
36835749 TTTTAAATTTA
1 TTTTAAATTTA
36835760 AAATTATTAT
Statistics
Matches: 81, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
10 3 0.04
11 48 0.59
12 22 0.27
13 8 0.10
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (11 bp):
TTTTAAATTTA
Found at i:36835670 original size:17 final size:17
Alignment explanation
Indices: 36835647--36835778 Score: 140
Period size: 17 Copynumber: 7.4 Consensus size: 17
36835637 ACCGATCCCT
36835647 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTTTAA-A
36835665 -TTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
36835681 TTTAGATTTATTTTAAA
1 TTTAAATTTATTTTAAA
36835698 TTTAAATTTCAAATTAGTTTTAAA
1 TTTAAA--T----TTA-TTTTAAA
* *
36835722 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAA
36835739 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* *
36835756 TTTAAAATTATTATAAA
1 TTTAAATTTATTTTAAA
36835773 TTTAAA
1 TTTAAA
36835779 ATAAATAAAT
Statistics
Matches: 98, Mismatches: 8, Indels: 17
0.80 0.07 0.14
Matches are distributed among these distances:
16 1 0.01
17 76 0.78
18 3 0.03
19 1 0.01
22 1 0.01
23 3 0.03
24 13 0.13
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:36835684 original size:6 final size:6
Alignment explanation
Indices: 36835647--36835778 Score: 93
Period size: 6 Copynumber: 23.0 Consensus size: 6
36835637 ACCGATCCCT
* * * *
36835647 TTTAAA TTT-AT TTTAAGA -TTAAA TTT-AT TTTAAA TTTAGA TTT-AT
1 TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
** *
36835692 TTTAAA TTTAAA TTTCAAA -TTAGT TTTAAA TTTAAA TTT-AA TTTAAG
1 TTTAAA TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
36835739 TTTAAA TTT-AT TTTAAA TTTAAA ATT--A TTATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA TTTAAA
36835779 ATAAATAAAT
Statistics
Matches: 96, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
4 2 0.02
5 23 0.24
6 65 0.68
7 6 0.06
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:36836269 original size:13 final size:13
Alignment explanation
Indices: 36836251--36836275 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36836241 GCTCCATCTG
36836251 TTTCCATTTATTA
1 TTTCCATTTATTA
36836264 TTTCCATTTATT
1 TTTCCATTTATT
36836276 TTCAATAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTCCATTTATTA
Found at i:36837343 original size:29 final size:29
Alignment explanation
Indices: 36837297--36837403 Score: 110
Period size: 30 Copynumber: 3.6 Consensus size: 29
36837287 CCCTGGAGAT
36837297 CCCT-AAACTTTCCAAAAATTACATTTTTA
1 CCCTCAAAC-TTCCAAAAATTACATTTTTA
* * *
36837326 CCCTCGAACTTCCTAAAATTTCATTTTTTGA
1 CCCTCAAACTTCCAAAAATTACA-TTTTT-A
*
36837357 -CATCAAAACTTCCAAAAATTACATTTTTA
1 CCCTC-AAACTTCCAAAAATTACATTTTTA
*
36837386 CCCCCAAACTTTCCAAAA
1 CCCTCAAAC-TTCCAAAA
36837404 TTCTATTTTA
Statistics
Matches: 63, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
29 21 0.33
30 26 0.41
31 16 0.25
ACGTcount: A:0.36, C:0.27, G:0.02, T:0.35
Consensus pattern (29 bp):
CCCTCAAACTTCCAAAAATTACATTTTTA
Found at i:36837994 original size:96 final size:96
Alignment explanation
Indices: 36837822--36838006 Score: 232
Period size: 96 Copynumber: 1.9 Consensus size: 96
36837812 AAAACTGTAA
*** **
36837822 AATTGAGGCAATATTCTTTTATTTCGAGTTTCGAAAATTTGTGTCTTAACTTACTAGGTGCAATT
1 AATTGAGGCAATATTCTTTTATTTCGAGTTTCGAAAATTTGCACCTTAACTTACTAGGTGCAACC
* * *
36837887 TTTTTTTAAATCGAAATAATCAAATACCCTT
66 TTTCTTCAAATCGAAATAACCAAATACCCTT
*
36837918 AATTGAGGCAATGTT-TTCTTATCTTCGA--TTCTGAAAATTTGCACCTTAACTTACTAGGTGCA
1 AATTGAGGCAATATTCTT-TTAT-TTCGAGTTTC-GAAAATTTGCACCTTAACTTACTAGGTGCA
*
36837980 ACCTTTCTTCAAATCGAGATAACCAAA
63 ACCTTTCTTCAAATCGAAATAACCAAA
36838007 CATCTTTTTC
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
95 5 0.07
96 66 0.87
97 5 0.07
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (96 bp):
AATTGAGGCAATATTCTTTTATTTCGAGTTTCGAAAATTTGCACCTTAACTTACTAGGTGCAACC
TTTCTTCAAATCGAAATAACCAAATACCCTT
Found at i:36838459 original size:3 final size:3
Alignment explanation
Indices: 36838451--36838493 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
36838441 GGTTTCGACA
36838451 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
36838494 GAATAGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:36838775 original size:3 final size:3
Alignment explanation
Indices: 36838767--36838800 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
36838757 TTGCTGTTAT
*
36838767 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
36838801 ATTCAAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:36838992 original size:275 final size:282
Alignment explanation
Indices: 36838627--36839180 Score: 745
Period size: 275 Copynumber: 2.0 Consensus size: 282
36838617 TTAGTTATAT
* * * * *
36838627 TTTTCTTCTTAAGTTAAAAAATTACTTATCCTATGTTTTTTTGCAATTAATGAGTTCAGGAGGAA
1 TTTTCTTCTTAAATTAAAAAATTACTTATCCCATGTTTTTTTGCAACTAATGACTTCAAGAGGAA
* * *
36838692 CTTCAACCGATAGGAATAGGTTCTATGCCAACTACTTATATGA-TTTCAAGGGTAATTGAAAAGT
66 CTTCAACCGATAAGAATAAGTTCTATGCCAACTACTTATATGACTTT-AAGAGTAATTGAAAAGT
* **
36838756 CTTGCTGTTA-TTT-A-TTAT-T-ATT-A-TTATTATTATTATTATCAT-T-A-T-ATTCAAATT
130 CTTGCTGTTATTTTAATTTATATCATTAATTTATAATTATTATTAAAATATAATTCATTCAAATT
* * *
36838810 GAATTATTTTGAATTAATTTTTTTAGGTTCAACTTTAGATGAATTATATTTAACTTTCAAGTGTA
195 GAATTATTTTGAATTAATTTTTTTAGGCTCAACCTTAGATAAATTATATTTAAC--T-AAGTGTA
36838875 TCCTAAATAAGTTTCTTGTACATTGA
257 TCCTAAATAAGTTTCTTGTACATTGA
36838901 TTTTCTTCTTAAATTAAAAAATTACTTATCCCATGCTTTTTTTGCAACTAATGACTTCAAGAGGA
1 TTTTCTTCTTAAATTAAAAAATTACTTATCCCATG-TTTTTTTGCAACTAATGACTTCAAGAGGA
*
36838966 ACTTCAACCGGTAAGAATAAGTTCTATGCCAACTACTTATATGACTTTAAGAGTAATTGAAAAGT
65 ACTTCAACCGATAAGAATAAGTTCTATGCCAACTACTTATATGACTTTAAGAGTAATTGAAAAGT
36839031 CTTGCTGTTATTTTAAATGTTTATAGTCGATTAAATTTTATAATTATTATTAAAATAGTAATTCG
130 CTTGCTGTTATTTT-AA--TTTATA-TC-ATT-AA-TTTATAATTATTATTAAAATA-TAATTC-
*
36839096 ATTCAAATTGAATTATTTTGAATTAATTTTTTTAGGCTCGACCTTAGATAAATTATATTTAACTA
186 ATTCAAATTGAATTATTTTGAATTAATTTTTTTAGGCTCAACCTTAGATAAATTATATTTAACTA
*
36839161 AGTGTATTCTAAATAAGTTT
251 AGTGTATCCTAAATAAGTTT
36839181 GTTTCCCATT
Statistics
Matches: 241, Mismatches: 17, Indels: 26
0.85 0.06 0.09
Matches are distributed among these distances:
274 33 0.14
275 93 0.39
276 6 0.02
278 1 0.00
281 4 0.02
283 1 0.00
285 3 0.01
287 1 0.00
289 16 0.07
291 1 0.00
292 21 0.09
293 2 0.01
295 59 0.24
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.44
Consensus pattern (282 bp):
TTTTCTTCTTAAATTAAAAAATTACTTATCCCATGTTTTTTTGCAACTAATGACTTCAAGAGGAA
CTTCAACCGATAAGAATAAGTTCTATGCCAACTACTTATATGACTTTAAGAGTAATTGAAAAGTC
TTGCTGTTATTTTAATTTATATCATTAATTTATAATTATTATTAAAATATAATTCATTCAAATTG
AATTATTTTGAATTAATTTTTTTAGGCTCAACCTTAGATAAATTATATTTAACTAAGTGTATCCT
AAATAAGTTTCTTGTACATTGA
Found at i:36841812 original size:29 final size:30
Alignment explanation
Indices: 36841750--36841814 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
36841740 CTCGAATATC
* ***
36841750 CAAATTTCTAAAAATTACTATTTTGTCCCT
1 CAAATTTCTAAAAATCACTATTTTCAACCT
36841780 -AAATTTCTAAAAATCAC-ATTTTCAACCT
1 CAAATTTCTAAAAATCACTATTTTCAACCT
36841808 CAAATTT
1 CAAATTT
36841815 TCCAAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 8 0.27
29 22 0.73
ACGTcount: A:0.38, C:0.20, G:0.02, T:0.40
Consensus pattern (30 bp):
CAAATTTCTAAAAATCACTATTTTCAACCT
Done.