Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 125 of 143
Found at i:36847031 original size:12 final size:12
Alignment explanation
Indices: 36847014--36847076 Score: 60
Period size: 12 Copynumber: 5.2 Consensus size: 12
36847004 ATGAATAAAT
36847014 AAAAAGAAAGAA
1 AAAAAGAAAGAA
36847026 AAAAAG-AAGAA
1 AAAAAGAAAGAA
* *
36847037 AAATAA-AGATAA
1 AAA-AAGAAAGAA
36847049 AAAAAGAGAAGAA
1 AAAAAGA-AAGAA
36847062 GAAAAA-AAAGAA
1 -AAAAAGAAAGAA
36847074 AAA
1 AAA
36847077 TGAGAGGTCG
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
11 13 0.31
12 20 0.48
13 4 0.10
14 5 0.12
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (12 bp):
AAAAAGAAAGAA
Found at i:36847044 original size:25 final size:26
Alignment explanation
Indices: 36847014--36847076 Score: 85
Period size: 28 Copynumber: 2.4 Consensus size: 26
36847004 ATGAATAAAT
*
36847014 AAAAAGAAAGAAAA-A-AAGAAGAAA
1 AAAAAGAAAAAAAAGAGAAGAAGAAA
36847038 AATAAAGATAAAAAAAGAGAAGAAGAAA
1 AA-AAAGA-AAAAAAAGAGAAGAAGAAA
36847066 AAAAAGAAAAA
1 AAAAAGAAAAA
36847077 TGAGAGGTCG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
24 2 0.06
25 5 0.15
26 10 0.29
27 6 0.18
28 11 0.32
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (26 bp):
AAAAAGAAAAAAAAGAGAAGAAGAAA
Found at i:36847055 original size:31 final size:35
Alignment explanation
Indices: 36847008--36847079 Score: 83
Period size: 37 Copynumber: 2.0 Consensus size: 35
36846998 AGAAAAATGA
*
36847008 ATAAATAAAAAGAAAGAAAAAAAGAAGAAAAATAA
1 ATAAATAAAAAGAAAGAAAAAAAGAAGAAAAATGA
* *
36847043 AGATAA-AAAAAGAGAAGAAGAAAAAAAAGAAAAATGA
1 ATA-AATAAAAAGA-AAGAA-AAAAAGAAGAAAAATGA
36847080 GAGGTCGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
35 9 0.29
36 7 0.23
37 15 0.48
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (35 bp):
ATAAATAAAAAGAAAGAAAAAAAGAAGAAAAATGA
Found at i:36847060 original size:15 final size:15
Alignment explanation
Indices: 36847017--36847073 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
36847007 AATAAATAAA
36847017 AAGAAAGAAAAA-AAG
1 AAGAAA-AAAAAGAAG
36847032 AAGAAAAATAAAG-A-
1 AAGAAAAA-AAAGAAG
* *
36847046 TA-AAAAAAGAGAAG
1 AAGAAAAAAAAGAAG
36847060 AAGAAAAAAAAGAA
1 AAGAAAAAAAAGAA
36847074 AAATGAGAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
12 3 0.09
13 6 0.18
14 4 0.12
15 20 0.61
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.04
Consensus pattern (15 bp):
AAGAAAAAAAAGAAG
Found at i:36847067 original size:37 final size:35
Alignment explanation
Indices: 36846996--36847077 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 35
36846986 CGGATTCAAT
* *
36846996 GAAGAAAAATGAATAAATAAAAAGAAAGAAAAAAA
1 GAAGAAAAATAAAGAAATAAAAAGAAAGAAAAAAA
36847031 GAAGAAAAATAAAGATAA-AAAAAGAGAAGAAGAAAAA
1 GAAGAAAAATAAAGA-AATAAAAAGA-AAGAA-AAAAA
*
36847068 AAAGAAAAAT
1 GAAGAAAAAT
36847078 GAGAGGTCGA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
35 20 0.49
36 7 0.17
37 14 0.34
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (35 bp):
GAAGAAAAATAAAGAAATAAAAAGAAAGAAAAAAA
Found at i:36848128 original size:49 final size:49
Alignment explanation
Indices: 36847977--36848128 Score: 128
Period size: 48 Copynumber: 3.1 Consensus size: 49
36847967 GGTTTGACAT
** * * *
36847977 GGAAGGATTGAGGCCGCGATAGCGAA-TCTAGTACCTAAGAAGATGTGATG
1 GGAAGGATT-AGGCCGCGACGGCGAATTC-GGTACCTTAGAAGAGGTGATG
* * * * * * * ** *
36848027 GGAAAGGTTTAGGCCACAACGGTGAATCCGATACCAT-GAAGAGACGAAG
1 GG-AAGGATTAGGCCGCGACGGCGAATTCGGTACCTTAGAAGAGGTGATG
36848076 GGAAGGATTAGGCCGCGACGGCGAATTCGGTACCTTAGAAGAGGTGATG
1 GGAAGGATTAGGCCGCGACGGCGAATTCGGTACCTTAGAAGAGGTGATG
36848125 GGAA
1 GGAA
36848129 AGGTTGAGGT
Statistics
Matches: 74, Mismatches: 25, Indels: 7
0.70 0.24 0.07
Matches are distributed among these distances:
48 27 0.36
49 23 0.31
50 17 0.23
51 7 0.09
ACGTcount: A:0.32, C:0.16, G:0.35, T:0.17
Consensus pattern (49 bp):
GGAAGGATTAGGCCGCGACGGCGAATTCGGTACCTTAGAAGAGGTGATG
Found at i:36848156 original size:98 final size:99
Alignment explanation
Indices: 36847977--36848238 Score: 296
Period size: 98 Copynumber: 2.7 Consensus size: 99
36847967 GGTTTGACAT
** * * *
36847977 GGAAGGATTGAGGCCGCGATAGCGAA-TCTAGTACCTAAGAAGATGTGATGGGAAAGGTTTAGGC
1 GGAAGGATTGAGGCCGCGACGGCGAATTC-GGTACCTTAGAAGATGTGATGGGAAAGGTTGAGGC
**** * * *
36848041 CACAACGGTGAATCCGATACCATGAAGA-GACGAAG
65 CACAACAACAAACCCGATACCATGAAGATG-CAAAA
* *
36848076 GGAAGGATT-AGGCCGCGACGGCGAATTCGGTACCTTAGAAGAGGTGATGGGAAAGGTTGAGGTC
1 GGAAGGATTGAGGCCGCGACGGCGAATTCGGTACCTTAGAAGATGTGATGGGAAAGGTTGAGGCC
**
36848140 GTAACAACAAACCCGATACCATGAAGATGCAAAA
66 ACAACAACAAACCCGATACCATGAAGATGCAAAA
* * * * *
36848174 GGAAAGATTGAGGTCGCGACGACGAATTCGGTACTTTAAAAGATGTGATGGGAAAGGTTGAGGCC
1 GGAAGGATTGAGGCCGCGACGGCGAATTCGGTACCTTAGAAGATGTGATGGGAAAGGTTGAGGCC
36848239 GCAATGGTGA
Statistics
Matches: 137, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
98 76 0.55
99 61 0.45
ACGTcount: A:0.34, C:0.16, G:0.33, T:0.18
Consensus pattern (99 bp):
GGAAGGATTGAGGCCGCGACGGCGAATTCGGTACCTTAGAAGATGTGATGGGAAAGGTTGAGGCC
ACAACAACAAACCCGATACCATGAAGATGCAAAA
Found at i:36848228 original size:99 final size:98
Alignment explanation
Indices: 36848054--36848236 Score: 269
Period size: 99 Copynumber: 1.9 Consensus size: 98
36848044 AACGGTGAAT
* * * * *
36848054 CCGATACCATGAAGAGACGAAGGGAAGGATTAGGCCGCGACGGCGAATTCGGTACCTTAGAAGAG
1 CCGATACCATGAAGAGACAAAAGGAAAGATTAGGCCGCGACGACGAATTCGGTACCTTAAAAGAG
36848119 GTGATGGGAAAGGTTGAGGTCGTAACAACAAAC
66 GTGATGGGAAAGGTTGAGGTCGTAACAACAAAC
* *
36848152 CCGATACCATGAAGATG-CAAAAGGAAAGATTGAGGTCGCGACGACGAATTCGGTACTTTAAAAG
1 CCGATACCATGAAGA-GACAAAAGGAAAGATT-AGGCCGCGACGACGAATTCGGTACCTTAAAAG
*
36848216 ATGTGATGGGAAAGGTTGAGG
64 AGGTGATGGGAAAGGTTGAGG
36848237 CCGCAATGGT
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
98 26 0.35
99 49 0.65
ACGTcount: A:0.34, C:0.15, G:0.33, T:0.17
Consensus pattern (98 bp):
CCGATACCATGAAGAGACAAAAGGAAAGATTAGGCCGCGACGACGAATTCGGTACCTTAAAAGAG
GTGATGGGAAAGGTTGAGGTCGTAACAACAAAC
Found at i:36848267 original size:50 final size:49
Alignment explanation
Indices: 36848007--36848648 Score: 348
Period size: 50 Copynumber: 13.0 Consensus size: 49
36847997 AGCGAATCTA
* * * * *
36848007 GTACCTAAGAAGATGTGATGGGAAAGGTTTAGGCCACAACGGTGAATCC
1 GTACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCC
* * * * * *
36848056 GATACCAT-GAAGA-GACGAAGGG-AAGGATT-AGGCCGCGACGGCGAATTCG
1 G-TACCTTAGAAGATG-TGAAGGGAAAGG-TTGAGGCCGCAACGGTGAA-CCC
* * * * ****
36848105 GTACCTTAGAAGAGGTGATGGGAAAGGTTGAGGTCGTAACAACAAACCC
1 GTACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCC
* ** * * * * ** * *
36848154 GATACCAT-GAAGATGCAAAAGGAAAGATTGAGGTCGCGACGACGAATTCG
1 G-TACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAA-CCC
* * * *
36848204 GTACTTTAAAAGATGTGATGGGAAAGGTTGAGGCCGCAATGGTGAACCTC
1 GTACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACC-C
* *
36848254 GTACCTTAGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGATGAACCC
1 GTACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCC
* ** * * *
36848303 AATACCTTAGAAGATGTGACCGAAAAGGTTGAGGCCGTAACGGTGAATCCG
1 -GTACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAA-CCC
* * * ** *
36848354 GTACCTCAAAAGATTTGAAGGGAAAGGTTGAGGCCGCAATAGCGAACCC
1 GTACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCC
* * * * * *
36848403 AATACCTTAAAAGATGTGATGGGAAAGGTTAAGGCTGCAACGATGAACCC
1 -GTACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCC
* * * * **
36848453 GGTACCTCAGAAGATGTGATA-GAAAAGATTGAGGCCGCAACGATGAATCTA
1 -GTACCTTAGAAGATGTGA-AGGGAAAGGTTGAGGCCGCAACGGTGAA-CCC
* * * ** * **
36848504 GTACCAT-GAA-ATTTGATGGGAAAGGTTGAGGTTGCAATGACGAACCC
1 GTACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCC
* * * * * * * * **
36848551 GGTACCAT-GAAGATTTTAAGGGAAAGGTTAAGGTCGAAATGGTAAACTT
1 -GTACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCC
* * * *
36848600 GATGCCTTAGAAGATATGAAGGAAAAGGTTGAGGCCGCAACGGCGAACC
1 G-TACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACC
36848649 TAGCACCTTA
Statistics
Matches: 443, Mismatches: 128, Indels: 43
0.72 0.21 0.07
Matches are distributed among these distances:
47 1 0.00
48 59 0.13
49 100 0.23
50 280 0.63
51 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.19
Consensus pattern (49 bp):
GTACCTTAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCC
Found at i:36848317 original size:100 final size:99
Alignment explanation
Indices: 36848008--36848648 Score: 409
Period size: 100 Copynumber: 6.5 Consensus size: 99
36847998 GCGAATCTAG
* * * * * ***
36848008 TACCTAAGAAGATGTGATGGGAAAGGTTTAGGCCACAACGGTGAATCCGATACCAT-GAAGAGAC
1 TACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCG-TACCTTAGAAGATTT
* ** ** **
36848072 GAAGGG-AAGGATT-AGGCCGCGACGGCGAATTCGG
65 GAAGGGAAAGG-TTGAGGCCGCAACGATGAACCCAA
* * * **** * **
36848106 TACCTTAGAAGAGGTGATGGGAAAGGTTGAGGTCGTAACAACAAACCCGATACCAT-GAAGATGC
1 TACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCG-TACCTTAGAAGATTT
* * * * * * ** **
36848170 AAAAGGAAAGATTGAGGTCGCGACGACGAATTCGG
65 GAAGGGAAAGGTTGAGGCCGCAACGATGAACCCAA
* * *
36848205 TACTTTAAAAGATGTGATGGGAAAGGTTGAGGCCGCAATGGTGAACCTCGTACCTTAGAAGATTT
1 TACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGTGAACC-CGTACCTTAGAAGATTT
36848270 GAAGGGAAAGGTTGAGGCCGCAACGATGAACCCAA
65 GAAGGGAAAGGTTGAGGCCGCAACGATGAACCCAA
** * * * * *
36848305 TACCTTAGAAGATGTGACCGAAAAGGTTGAGGCCGTAACGGTGAATCCGGTACCTCAAAAGATTT
1 TACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGTGAA-CCCGTACCTTAGAAGATTT
* *
36848370 GAAGGGAAAGGTTGAGGCCGCAA-TAGCGAACCCAA
65 GAAGGGAAAGGTTGAGGCCGCAACGA-TGAACCCAA
* * * * * *
36848405 TACCTTAAAAGATGTGATGGGAAAGGTTAAGGCTGCAACGATGAACCCGGTACCTCAGAAGATGT
1 TACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGTGAACCC-GTACCTTAGAAGATTT
* * * * *
36848470 GATA-GAAAAGATTGAGGCCGCAACGATGAATCTAG
65 GA-AGGGAAAGGTTGAGGCCGCAACGATGAACCCAA
* * ** * ** *
36848505 TACCAT-GAA-ATTTGATGGGAAAGGTTGAGGTTGCAATGACGAACCCGGTACCAT-GAAGATTT
1 TACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGTGAACCC-GTACCTTAGAAGATTT
* * * * * * * ***
36848567 TAAGGGAAAGGTTAAGGTCGAAATGGTAAACTTGA
65 GAAGGGAAAGGTTGAGGCCGCAACGATGAACCCAA
* * * * *
36848602 TGCCTTAGAAGATATGAAGGAAAAGGTTGAGGCCGCAACGGCGAACC
1 TACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGTGAACC
36848649 TAGCACCTTA
Statistics
Matches: 428, Mismatches: 103, Indels: 23
0.77 0.19 0.04
Matches are distributed among these distances:
96 1 0.00
97 31 0.07
98 98 0.23
99 98 0.23
100 196 0.46
101 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.19
Consensus pattern (99 bp):
TACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCGTACCTTAGAAGATTTG
AAGGGAAAGGTTGAGGCCGCAACGATGAACCCAA
Found at i:36848389 original size:150 final size:150
Alignment explanation
Indices: 36848008--36848642 Score: 489
Period size: 150 Copynumber: 4.3 Consensus size: 150
36847998 GCGAATCTAG
* ** * * * * * *
36848008 TACCTAAGAAGATGTGATGGGAAAGGTTTAGGCCACAACGGTGAATCCGATACCATGAAGAGA--
1 TACCTTAGAAGATGTGAAAGAAAAGGTTGAGGCCGCAACGGTGAATCCGGTACC-TCAAAAGATT
* * * * ** * ** *
36848071 CGAAGGG-AAGGATT-AGGCCGCGACGGCGAATTCGGTACCTTAGAAGAGGTGATGGGAAAGGTT
65 TGATGGGAAAGG-TTGAGGCCGCAATGGCGAACCCAGTACCTTAGAAGATTTGAAGGGAAAGGTT
* * * * **
36848134 GAGGTCGTAACAACAAACCCGA
129 AAGGCCGCAACGATGAACCCGA
* ** * * * * ** * * * *
36848156 TACCAT-GAAGATGCAAAAGGAAAGATTGAGGTCGCGACGACGAATTCGGTACTTTAAAAGATGT
1 TACCTTAGAAGATGTGAAAGAAAAGGTTGAGGCCGCAACGGTGAATCCGGTACCTCAAAAGATTT
* *
36848220 GATGGGAAAGGTTGAGGCCGCAATGGTGAACCTC-GTACCTTAGAAGATTTGAAGGGAAAGGTTG
66 GATGGGAAAGGTTGAGGCCGCAATGGCGAACC-CAGTACCTTAGAAGATTTGAAGGGAAAGGTTA
*
36848284 AGGCCGCAACGATGAACCCAA
130 AGGCCGCAACGATGAACCCGA
** *
36848305 TACCTTAGAAGATGTGACCGAAAAGGTTGAGGCCGTAACGGTGAATCCGGTACCTCAAAAGATTT
1 TACCTTAGAAGATGTGAAAGAAAAGGTTGAGGCCGCAACGGTGAATCCGGTACCTCAAAAGATTT
* * * * * *
36848370 GAAGGGAAAGGTTGAGGCCGCAATAGCGAACCCAATACCTTAAAAGATGTGATGGGAAAGGTTAA
66 GATGGGAAAGGTTGAGGCCGCAATGGCGAACCCAGTACCTTAGAAGATTTGAAGGGAAAGGTTAA
* *
36848435 GGCTGCAACGATGAACCCGG
131 GGCCGCAACGATGAACCCGA
* * * * ** *
36848455 TACCTCAGAAGATGTGATAGAAAAGATTGAGGCCGCAACGATGAATCTAGTA-C-CATGAA-ATT
1 TACCTTAGAAGATGTGAAAGAAAAGGTTGAGGCCGCAACGGTGAATCCGGTACCTCA-AAAGATT
** * * * *
36848517 TGATGGGAAAGGTTGAGGTTGCAATGACGAACCCGGTACCAT-GAAGATTTTAAGGGAAAGGTTA
65 TGATGGGAAAGGTTGAGGCCGCAATGGCGAACCCAGTACCTTAGAAGATTTGAAGGGAAAGGTTA
* * * * * **
36848581 AGGTCGAAATGGTAAACTTGA
130 AGGCCGCAACGATGAACCCGA
* * *
36848602 TGCCTTAGAAGATATGAAGGAAAAGGTTGAGGCCGCAACGG
1 TACCTTAGAAGATGTGAAAGAAAAGGTTGAGGCCGCAACGG
36848643 CGAACCTAGC
Statistics
Matches: 381, Mismatches: 98, Indels: 17
0.77 0.20 0.03
Matches are distributed among these distances:
146 6 0.02
147 97 0.25
148 50 0.13
149 68 0.18
150 160 0.42
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.19
Consensus pattern (150 bp):
TACCTTAGAAGATGTGAAAGAAAAGGTTGAGGCCGCAACGGTGAATCCGGTACCTCAAAAGATTT
GATGGGAAAGGTTGAGGCCGCAATGGCGAACCCAGTACCTTAGAAGATTTGAAGGGAAAGGTTAA
GGCCGCAACGATGAACCCGA
Found at i:36848965 original size:39 final size:39
Alignment explanation
Indices: 36848902--36849403 Score: 195
Period size: 39 Copynumber: 12.9 Consensus size: 39
36848892 GAAGGTTTCG
* *
36848902 ATCTTTTATCCCGAGCCCGGGGCAGATCACCATCAGTCA
1 ATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGTCA
* *
36848941 ATCTCTTACCCCGAGCCTGGGGCAGATTACAGCCATC---CG
1 ATCTTTTACCCCGAGCCTGGGGCAGA-T-CA-CCATCAGTCA
* ** * * * * * *
36848980 ATCTCTTACCATGAGCTTGAGGTAAATTACCATCAGCCA
1 ATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGTCA
* * * * *
36849019 ATCTCTTACCCAGAGCCTGGGGTAGATTGTAGCCAT-A--CG
1 ATCTTTTACCCCGAGCCTGGGGCAGA-T-CA-CCATCAGTCA
* * *
36849058 ATCTTTTACCTCGAGCTTGGGGCAGATCACCATCA-ACTA
1 ATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGTC-A
* * * * *** *
36849097 GTCTTTTATCTCGAGCTTGGGGCAGAT-TGTAGTCA-TCCG
1 ATCTTTTACCCCGAGCCTGGGGCAGATCACCA-TCAGT-CA
* ** * *
36849136 ATCTTTTACCCCAAGCCTGGGATA-ATCACCATTAGCCA
1 ATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGTCA
* * * * * * * *
36849174 ATCTCTTACCCCGAGCTTAGGGCAG-TTA-TAGCCGTCCG
1 ATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGT-CA
* *
36849212 ATCTTTTACCCCGAGCTTGGGGCAGATCACCATCAGCCA
1 ATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGTCA
* * * * * ** * *
36849251 ATCTCTAACCCCGAGCCTAGGGCAGATTATCGCCATTCG
1 ATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGTCA
* *
36849290 ATCTTTTACACCGAGCCTGGGGTAGATCACCATCAG-CTA
1 ATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGTC-A
* * * ** * * * *
36849329 ATCTTTTATCTCGAGCTTGGGTG-AGATTGCAATAATTCG
1 ATCTTTTACCCCGAGCCTGGG-GCAGATCACCATCAGTCA
** *
36849368 ATCTTTTACCCCGAGCCTAAGGCAAATCACCATCAG
1 ATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAG
36849404 CCACCCGATC
Statistics
Matches: 330, Mismatches: 109, Indels: 48
0.68 0.22 0.10
Matches are distributed among these distances:
36 9 0.03
37 5 0.02
38 55 0.17
39 239 0.72
40 8 0.02
41 5 0.02
42 9 0.03
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (39 bp):
ATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGTCA
Found at i:36849029 original size:78 final size:78
Alignment explanation
Indices: 36848900--36849424 Score: 464
Period size: 78 Copynumber: 6.7 Consensus size: 78
36848890 ATGAAGGTTT
* ** * *
36848900 CGATCTTTTATCCCGAGCCCGGGGCAGATCACCATCAGTCAATCTCTTACCCCGAGCCTGGGGCA
1 CGATCTTTTACCCCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGCA
*
36848965 GATTACAGCCATC
66 GATTATAGCCATC
* ** * * * * *
36848978 CGATCTCTTACCATGAGCTTGAGGTAAATTACCATCAGCCAATCTCTTACCCAGAGCCTGGGGTA
1 CGATCTTTTACCCCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGCA
* *
36849043 GATTGTAGCCATA
66 GATTATAGCCATC
* * * * * * * * *
36849056 CGATCTTTTACCTCGAGCTTGGGGCAGATCACCATCAACTAGTCTTTTATCTCGAGCTTGGGGCA
1 CGATCTTTTACCCCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGCA
* *
36849121 GATTGTAGTCATC
66 GATTATAGCCATC
* * * * *
36849134 CGATCTTTTACCCCAAGCCT-GGG-ATAATCACCATTAGCCAATCTCTTACCCCGAGCTTAGGGC
1 CGATCTTTTACCCCGAGCTTGGGGCA-AATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGC
*
36849197 AG-TTATAGCCGTC
65 AGATTATAGCCATC
* * *
36849210 CGATCTTTTACCCCGAGCTTGGGGCAGATCACCATCAGCCAATCTCTAACCCCGAGCCTAGGGCA
1 CGATCTTTTACCCCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGCA
* *
36849275 GATTATCGCCATT
66 GATTATAGCCATC
* * * * * * * * *
36849288 CGATCTTTTACACCGAGCCTGGGGTAGATCACCATCAGCTAATCTTTTATCTCGAGCTTGGGTG-
1 CGATCTTTTACCCCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGGG-GC
** *** *
36849352 AGATTGCAATAATT
65 AGATTATAGCCATC
* **
36849366 CGATCTTTTACCCCGAGCCTAAGGCAAATCACCATCAGCCACCCGATCTCTTACCCCGA
1 CGATCTTTTACCCCGAGCTTGGGGCAAATCACCATCAGCCA----ATCTCTTACCCCGA
36849425 CATAGGCAGA
Statistics
Matches: 355, Mismatches: 83, Indels: 14
0.79 0.18 0.03
Matches are distributed among these distances:
76 27 0.08
77 73 0.21
78 243 0.68
79 1 0.00
82 11 0.03
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (78 bp):
CGATCTTTTACCCCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGCA
GATTATAGCCATC
Found at i:36849250 original size:232 final size:234
Alignment explanation
Indices: 36848900--36849471 Score: 654
Period size: 232 Copynumber: 2.4 Consensus size: 234
36848890 ATGAAGGTTT
* * * * *
36848900 CGATCTTTTATCCCGAGCCCGGGGCAGATCACCATCAGTCAATCTCTTACCCCGAGCCTGGGGCA
1 CGATCTTTTACCCCGAGCCTGGGACAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCA
* * * *
36848965 GATTACAGCCATCCGATCTCTTACCATGAGCTTGAGGTAAATTACCATCAGCCAATCTCTTACCC
66 GATTACAGCCATCCGATCTCTTACCACGAGCTTGAGGCAAATCACCATCAGCCAATCTCTAACCC
* * * *
36849030 AGAGCCTGGGGTAGATTGTAGCCATACGATCTTTTAC-CTCGAGCTTGGGGCAGATCACCATCAA
131 AGAGCCTAGGGCAGATTATAGCCATACGATCTTTTACAC-CGAGCCTGGGGCAGATCACCATCAA
* * * *
36849094 CTAGTCTTTTATCTCGAGCTTGGG-GCAGATTGTAGTCATC
195 CTAATCTTTTATCTCGAGCTTGGGTG-AGATTGCAATAATC
* * * *
36849134 CGATCTTTTACCCCAAGCCTGGGATA-ATCACCATTAGCCAATCTCTTACCCCGAGCTTAGGGCA
1 CGATCTTTTACCCCGAGCCTGGGACAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCA
* * * * * *
36849198 G-TTATAGCCGTCCGATCTTTTACCCCGAGCTTGGGGCAGATCACCATCAGCCAATCTCTAACCC
66 GATTACAGCCATCCGATCTCTTACCACGAGCTTGAGGCAAATCACCATCAGCCAATCTCTAACCC
* * * * *
36849262 CGAGCCTAGGGCAGATTATCGCCATTCGATCTTTTACACCGAGCCTGGGGTAGATCACCATCAGC
131 AGAGCCTAGGGCAGATTATAGCCATACGATCTTTTACACCGAGCCTGGGGCAGATCACCATCAAC
*
36849327 TAATCTTTTATCTCGAGCTTGGGTGAGATTGCAATAATT
196 TAATCTTTTATCTCGAGCTTGGGTGAGATTGCAATAATC
* * *
36849366 CGATCTTTTACCCCGAGCCTAAGG-CAAATCACCATCAGCCACCCGATCTCTTACCCCGA-CATA
1 CGATCTTTTACCCCGAGCCT-GGGACAGATCACCATCAGCCA----ATCTCTTACCCCGAGCCTA
* * * * * *
36849429 -GGCAGATCACAACCATCCAATCTCTTACCCCGATCATGAGGCA
61 GGGCAGATTACAGCCATCCGATCTCTTACCACGAGCTTGAGGCA
36849472 GATTACAGTT
Statistics
Matches: 282, Mismatches: 47, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
232 159 0.56
233 52 0.18
234 21 0.07
235 5 0.02
236 31 0.11
237 14 0.05
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (234 bp):
CGATCTTTTACCCCGAGCCTGGGACAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCA
GATTACAGCCATCCGATCTCTTACCACGAGCTTGAGGCAAATCACCATCAGCCAATCTCTAACCC
AGAGCCTAGGGCAGATTATAGCCATACGATCTTTTACACCGAGCCTGGGGCAGATCACCATCAAC
TAATCTTTTATCTCGAGCTTGGGTGAGATTGCAATAATC
Found at i:36851164 original size:18 final size:18
Alignment explanation
Indices: 36851141--36851176 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36851131 GGCTCACCAA
36851141 AAAGGAAAAAGAAGAGAG
1 AAAGGAAAAAGAAGAGAG
* *
36851159 AAAGGAGAGAGAAGAGAG
1 AAAGGAAAAAGAAGAGAG
36851177 GATTTTTGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (18 bp):
AAAGGAAAAAGAAGAGAG
Found at i:36851745 original size:30 final size:29
Alignment explanation
Indices: 36851680--36851793 Score: 142
Period size: 29 Copynumber: 3.9 Consensus size: 29
36851670 CACTAAAGGT
*
36851680 CCTTAAACTTTTCCAAAGTTACATTTTGA-
1 CCTTAAAC-TTTCCAAAATTACATTTTGAC
*
36851709 CCTTAAACTTTCCAAAATTACATTTTTACC
1 CCTTAAACTTTCCAAAATTACATTTTGA-C
*
36851739 CCTTAAAC-TTCCAAAAATCACATTTTGAC
1 CCTTAAACTTTCC-AAAATTACATTTTGAC
**
36851768 CCTCGAACTTTCCAAAATTACATTTT
1 CCTTAAACTTTCCAAAATTACATTTT
36851794 TATCCCCGAA
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
28 18 0.24
29 31 0.42
30 25 0.34
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (29 bp):
CCTTAAACTTTCCAAAATTACATTTTGAC
Found at i:36851803 original size:29 final size:28
Alignment explanation
Indices: 36851689--36851804 Score: 108
Period size: 30 Copynumber: 4.0 Consensus size: 28
36851679 TCCTTAAACT
* * ***
36851689 TTTCCAAAGTTACATTTTGACCTTAAAC
1 TTTCCAAAATTACATTTTTACCCCGAAC
*
36851717 TTTCCAAAATTACATTTTTACCCCTTAAAC
1 TTTCCAAAATTACATTTTTACCCC--GAAC
* *
36851747 -TTCCAAAAATCACATTTTGACCCTCGAAC
1 TTTCC-AAAATTACATTTTTACCC-CGAAC
36851776 TTTCCAAAATTACATTTTTATCCCCGAAC
1 TTTCCAAAATTACATTTTTA-CCCCGAAC
36851805 ATCTAAAAAT
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
28 20 0.27
29 25 0.34
30 27 0.37
31 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.36
Consensus pattern (28 bp):
TTTCCAAAATTACATTTTTACCCCGAAC
Found at i:36851813 original size:29 final size:30
Alignment explanation
Indices: 36851722--36851852 Score: 121
Period size: 29 Copynumber: 4.5 Consensus size: 30
36851712 TAAACTTTCC
* *
36851722 AAAATTA-CATTTTTACCCCTTAAACTTCCA
1 AAAATTACCATTTTTA-CCCTCAAACATCCA
* * * *
36851752 AAAATCA-CATTTTGACCCTCGAACTTTCC-
1 AAAATTACCATTTTTACCCTCAAAC-ATCCA
* *
36851781 AAAATTA-CATTTTTATCCC-CGAACATCTA
1 AAAATTACCATTTTTA-CCCTCAAACATCCA
36851810 AAAATTACCA-TTTTACCCTCAAACATCCA
1 AAAATTACCATTTTTACCCTCAAACATCCA
36851839 AAAATTACCATTTT
1 AAAATTACCATTTT
36851853 GTCCCTAAAT
Statistics
Matches: 85, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
28 5 0.06
29 55 0.65
30 25 0.29
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (30 bp):
AAAATTACCATTTTTACCCTCAAACATCCA
Found at i:36851822 original size:59 final size:58
Alignment explanation
Indices: 36851700--36851902 Score: 175
Period size: 58 Copynumber: 3.5 Consensus size: 58
36851690 TTCCAAAGTT
* *
36851700 ACATTTTGA-CCTTAAACTTTCCAAAATTACATTTTTACCCCTTAAACTTCCAAAAATC
1 ACATTTTGACCCTCAAACTTTCCAAAATTACATTTTTACCCC-TAAACATCCAAAAATC
* * * *
36851758 ACATTTTGACCCTCGAACTTTCCAAAATTACATTTTTATCCCC-GAACATCTAAAAATT
1 ACATTTTGACCCTCAAACTTTCCAAAATTACATTTTTA-CCCCTAAACATCCAAAAATC
* ** **
36851816 ACCATTTT-ACCCTCAAAC-ATCCAAAAATTACCATTTTGT--CCCTAAATTTTAAAAAATC
1 A-CATTTTGACCCTCAAACTTTCC-AAAATTA-CATTTT-TACCCCTAAACATCCAAAAATC
* * **
36851874 ACATTTTCAACCTCAAGTTTTCCAAAATT
1 ACATTTTGACCCTCAAACTTTCCAAAATT
36851903 TTGATTTCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 18
0.77 0.12 0.12
Matches are distributed among these distances:
57 12 0.10
58 60 0.51
59 41 0.35
60 5 0.04
ACGTcount: A:0.36, C:0.26, G:0.03, T:0.35
Consensus pattern (58 bp):
ACATTTTGACCCTCAAACTTTCCAAAATTACATTTTTACCCCTAAACATCCAAAAATC
Found at i:36851844 original size:58 final size:58
Alignment explanation
Indices: 36851700--36851852 Score: 161
Period size: 59 Copynumber: 2.6 Consensus size: 58
36851690 TTCCAAAGTT
* * *
36851700 ACATTTTGA-CCTTAAACTTTCCAAAATTACATTTTTACCCCTTAAACTTCCAAAAATC
1 ACATTTTGACCCTCAAACTATCCAAAATTACATTTTTACCCC-TAAACATCCAAAAATC
* * * * *
36851758 ACATTTTGACCCTCGAACTTTCCAAAATTACATTTTTATCCCC-GAACATCTAAAAATT
1 ACATTTTGACCCTCAAACTATCCAAAATTACATTTTTA-CCCCTAAACATCCAAAAATC
36851816 ACCATTTT-ACCCTCAAAC-ATCCAAAAATTACCATTTT
1 A-CATTTTGACCCTCAAACTATCC-AAAATTA-CATTTT
36851853 GTCCCTAAAT
Statistics
Matches: 82, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
57 3 0.04
58 37 0.45
59 38 0.46
60 4 0.05
ACGTcount: A:0.36, C:0.27, G:0.03, T:0.35
Consensus pattern (58 bp):
ACATTTTGACCCTCAAACTATCCAAAATTACATTTTTACCCCTAAACATCCAAAAATC
Found at i:36853766 original size:358 final size:355
Alignment explanation
Indices: 36853101--36855534 Score: 1619
Period size: 358 Copynumber: 6.9 Consensus size: 355
36853091 GTTTCGACAA
**
36853101 TTATTATTAGAATAGTAATTCGATTCAAATT-GATTTATCGTGAATT--ATTTTTTAGGCTCGAC
1 TTATTATTAGAATAGTAATTCGATTCAAATTGGA-TTATTTTGAATTAAATTTTTTAGGCTCGAC
* * * * * *
36853163 TTTAAATGAATTATATTTAAAAGATAATCTTTTTTTCAATTTTAATAAAGTAATATAATTTGATT
65 TTTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATATAGTAATATAATTTGATT
*
36853228 TTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTTTTTACTTAGTTATGTTTTTCTTAT
130 TTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATG-TTTTCTT-T
* * * * ** *
36853293 TAAATTAAAAAAATAATTATCTCATTCTTTTATGCAACAAATGGCTTCAGGAGTAACTTCTAAGG
193 TAAATTAAAAAATTAATTATCCCATGCTTTTATGCAACTAATCACTTCAGGAGGAACTTCTAAGG
* ** * * * * **
36853358 AATGAATCAGATTCTATGTCAACTATTTATATGACTTCTAGTGTAATTGAAAAATTTTATTGTTA
258 AATGAATCAAATTCTATACCAACAACTTATATGACTTCAAGTGGAATTGAAAAAGCTTATTGTTA
* **
36853423 TTTTAAATGTTTATAGTCGGTTAACTATTATTT
323 TTTTAAATATTTATAGTCACTTAACTATTATTT
* *
36853456 TTATTATTAGAATAGTAATTCGATTCAAATTGGATTATTTTGAATTAAATTGTTTTAAGCTCAAC
1 TTATTATTAGAATAGTAATTCGATTCAAATTGGATTATTTTGAATTAAATT-TTTTAGGCTCGAC
*
36853521 TTTAGATAAATTATATTTAAATGATAATCGTTTTTTCAATTCTAATATAGTAATATAATTTGATT
65 TTTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATATAGTAATATAATTTGATT
* *
36853586 TTCAAGTGTATCCTAAATAAATTTCTTGCCCATTGATATTATTTACTTAGTTATGTATTTCTTCT
130 TTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATGT-TTTCTT-T
* * ** *
36853651 TAAATTAAAAAATTTAATTATCCCACGCTTTTATTCAACTAATCACTTTTGTAGGAGA-TTCTAA
193 TAAATTAAAAAA-TTAATTATCCCATGCTTTTATGCAACTAATCACTTCAGGAGGA-ACTTCTAA
*
36853715 GGAATGAAAT-AAATTCTATACCAACAACTTATATGACTTCAAG-GGAATTGAAAAGGCTTATTG
256 GGAATG-AATCAAATTCTATACCAACAACTTATATGACTTCAAGTGGAATTGAAAAAGCTTATTG
*
36853778 TTATTTTAAATATTTATAGTCACTTAATTATTATTT
320 TTATTTTAAATATTTATAGTCACTTAACTATTATTT
* *
36853814 TTATTATTAAAATAGTAATTCGATTCAAATTGAATTATTTTGAATTAAATTCTTTTAGGCTCGAC
1 TTATTATTAGAATAGTAATTCGATTCAAATTGGATTATTTTGAATTAAATT-TTTTAGGCTCGAC
36853879 TTTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATATAGTAATATAATTTGATT
65 TTTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATATAGTAATATAATTTGATT
* *
36853944 TTCAAGTGTATCCTAAATAAGCTTCTTGTCCATTGATATTATTTACTTAGTTATGTCTT-TTTTA
130 TTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATGTTTTCTTTTA
* * * * *
36854008 AATTAAAAAAAATTAATTATCCCATGCTTTTATGCAACTAGTGACTTCAGGTGGAGCTTCTAAAG
195 AATT--AAAAAATTAATTATCCCATGCTTTTATGCAACTAATCACTTCAGGAGGAACTTCTAAGG
* **** ** * **
36854073 AA--AAGC--ATTGCTATTATTTTCAGTGTTTATAGTTGA-TT-AACTATTATTATT-ATTAGAA
258 AATGAATCAAATT-CTA-TACCAACA--ACTTATA--TGACTTCAAGT-GGA--ATTGA--A-AA
* * ** * * *
36854131 TAG-TAATTCG--A-TTCAAATTGATTTATCTTGAATTAA--ATTTTTT
311 -AGCTTATT-GTTATTTTAAA-T-ATTTATAGTCACTTAACTATTATTT
* * * **
36854174 TTAGGTT-TTCG-AT--T--TTAGA-T-AAATT--A-TA-TTTAAATGATAATATTTTTTCA-AT
1 TTA--TTATTAGAATAGTAATTCGATTCAAATTGGATTATTTTGAAT--TAA-ATTTTTT-AGGC
* * * * * * *
36854226 TCTAATTAAATACCATAATTTGAT-TTTCAAGTGTATACTAAATAAGTTTCTTGTCCA-T-TAAT
60 TCGACTT---TA-GATAAATT-ATATTT-AAATG---A-T-AATCA-TTT-TT-TCAATTCTAAT
* * * * *** * * ** * * *
36854288 ATTATTTACT-TAGTTATG-TCTTTCTTA-T-TAAATTAAAAAAAATTAATTATCCCATT-TTTT
111 A-TA-GTAATATAATT-TGAT-TTTC-AAGTGTATCCT-AAATAAGTTTCTTGT-CCATTGATAT
** * * * *** ** * * * *
36854348 TATGCAATTA---ATG---GC--TTCAGGGAAAACGTCT-A-GA--CTA-G-----AAGCAGCTA
169 TATTTACTTAGTTATGTTTTCTTTTAAATTAAAAAAT-TAATTATCCCATGCTTTTATGCAACTA
* ** * * ** * * * ** * *
36854395 A--AGCTTAAGCGAGTTACCTC-ACCAAGAA--AAGAAAAGTCTGA-GCGAATTATTTTTATGAC
233 ATCA-CTTCAG-GAGGAACTTCTA--AGGAATGAATCAAATTCT-ATACCAACAACTTATATGAC
* * * * *
36854454 TTCAAAG-GTAATTTGAAAGA-CTTGTTGTTATTTTAAATGTTTTTAGTC-CATTAAATACTATT
293 TTC-AAGTGGAA-TTGAAAAAGCTTATTGTTATTTTAAATATTTATAGTCAC-TT--A-ACTATT
* *
36854516 AGTA
352 ATTT
* * * * * * * * *
36854520 GTAGTAGTGGCATAGTATATT-GATTCAAATAGAATTATTTTGAATTAACTTTTTTTTAGTCTTC
1 TTATTATTAGAATAGTA-ATTCGATTCAAATTGGATTATTTTGAATTAA--ATTTTTTAGGC-TC
*
36854584 -ACGTTAGATAAATTATATTTAAATGATAAT-ATTTTTTCAATTCTAATA-AGATAATATAATTT
62 GACTTTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATATAG-TAATATAATTT
* * *
36854646 GATTTTCAAGTGTGTCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAATAATGTTTTTC
126 GATTTTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATG-TTTTC
**
36854711 TTTTTAAATTAAAAAAATTAATTATCCCATGCTTTTATGCAACTAATGGCTTCAGGAGGAACTTC
190 -TTTTAAATT-AAAAAATTAATTATCCCATGCTTTTATGCAACTAATCACTTCAGGAGGAACTTC
* * ** *
36854776 AAAGGAATGAAAT-AAATTCTATGCCAATGACTTATATGAATTCAAG-GGTAATTG-AAAAGTCT
253 TAAGGAATG-AATCAAATTCTATACCAACAACTTATATGACTTCAAGTGG-AATTGAAAAAG-CT
* * * *
36854838 TGTTATTATTTTAAATGTTTATAGTTGA-TTAACTATTA---
315 TATTGTTATTTTAAATATTTATAG-TCACTTAACTATTATTT
* * *
36854876 TTATTATTAGAATAGTAATTCGATT-AAGATAGAATTATTTTGAATTAAAATTTTTTAGACTCGA
1 TTATTATTAGAATAGTAATTCGATTCAA-ATTGGATTATTTTGAATT-AAATTTTTTAGGCTCGA
36854940 CTTTAGATAAATTATATTTAAATGATAAT-ATTTTTTCAATTCTAATATAGTAATATAATTTGAT
64 CTTTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATATAGTAATATAATTTGAT
* * * * *
36855004 TTTCAAGTGTATCCAAAATAAATTTCTTGTCTACT-A-A-TA-TTA--T-GTT-T-TTCT-TTTT
129 TTTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATGTTTTCTTTT
* *
36855059 AAATT-AAAAATTAATTATCCCATGCTTTTATGCAACTAATGACTTCAGGATGAACTTCTAAGGA
194 AAATTAAAAAATTAATTATCCCATGCTTTTATGCAACTAATCACTTCAGGAGGAACTTCTAAGGA
* * ** * *
36855123 ATGTAAT-AGATTCTAAACCAATGACTTATATATGATTTCAAG-GGTAATTG-AAAAGCCTTGTT
259 ATG-AATCAAATTCTATACCAACAAC-T-TATATGACTTCAAGTGG-AATTGAAAAAG-CTTATT
* *
36855185 GTTATTTTAAATGTTTATAGTCGA-TTAACTATTATTA
319 GTTATTTTAAATATTTATAGTC-ACTTAACTATTATTT
* * * * * *
36855222 TTATTATTTGATTAGCAATTCGATTCAAATT-GATTTATCTTGAATTAAGTTTTTTTAGGCTCAA
1 TTATTATTAGAATAGTAATTCGATTCAAATTGGA-TTATTTTGAATTAA-ATTTTTTAGGCTCGA
* * * *
36855286 CTATAGATAAATTATATTTTAATGATATAT-TTTTTTTCAATTCTAATAAAGTAATATAATTTGA
64 CTTTAGATAAATTATATTTAAATGATA-ATCATTTTTTCAATTCTAATATAGTAATATAATTTGA
* * *
36855350 TTTTCAAGTGTATCTTAAATAAGTTTCTTGTCTATTGAAATTATTTACTTAGTTATGTCTTTCTT
128 TTTTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATGT-TTTCTT
* * * * *
36855415 ATTAAATTAAGAAATTAATTATCCCATGCTTTTATGTAACTAATGACCTCAGGAGGAGCTTCTAA
192 -TTAAATTAAAAAATTAATTATCCCATGCTTTTATGCAACTAATCACTTCAGGAGGAACTTCTAA
* * **
36855480 GGAATGAATCAGATTCTATGCCAACGGCTTATATGACTTCAA-TGGTAATTGAAAA
256 GGAATGAATCAAATTCTATACCAACAACTTATATGACTTCAAGTGG-AATTGAAAA
36855535 GCCTTGTTAT
Statistics
Matches: 1640, Mismatches: 270, Indels: 334
0.73 0.12 0.15
Matches are distributed among these distances:
340 7 0.00
341 121 0.07
342 15 0.01
343 87 0.05
344 11 0.01
345 17 0.01
346 92 0.06
347 84 0.05
348 12 0.01
349 4 0.00
350 19 0.01
351 24 0.01
352 31 0.02
353 14 0.01
354 20 0.01
355 171 0.10
356 120 0.07
357 25 0.02
358 396 0.24
359 92 0.06
360 103 0.06
361 29 0.02
362 83 0.05
363 13 0.01
364 13 0.01
365 31 0.02
366 6 0.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.44
Consensus pattern (355 bp):
TTATTATTAGAATAGTAATTCGATTCAAATTGGATTATTTTGAATTAAATTTTTTAGGCTCGACT
TTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATATAGTAATATAATTTGATTT
TCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATGTTTTCTTTTAA
ATTAAAAAATTAATTATCCCATGCTTTTATGCAACTAATCACTTCAGGAGGAACTTCTAAGGAAT
GAATCAAATTCTATACCAACAACTTATATGACTTCAAGTGGAATTGAAAAAGCTTATTGTTATTT
TAAATATTTATAGTCACTTAACTATTATTT
Found at i:36855348 original size:702 final size:697
Alignment explanation
Indices: 36853100--36855544 Score: 2082
Period size: 702 Copynumber: 3.5 Consensus size: 697
36853090 CGTTTCGACA
* *
36853100 ATTATTATTAGAATAGTAATTCGATTCAAATTGATTTATCGTGAATT-A-TTTTTTAGGCTCGAC
1 ATTATTATTAGAATAGTAATTCGATTCAAATTGAATTATCTTGAATTAATTTTTTTAGGCTCGAC
* * * * *
36853163 TTTAAATGAATTATATTTAAAAGATAATCTTTTTTTCAATTTTAATAAAGTAATATAATTTGATT
66 TTTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATAAAGTAATATAATTTGATT
*
36853228 TTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTTTTTACTTAGTTATGTTTTTCTTAT
131 TTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATGTTTTTCTTAT
* * * * * *
36853293 TAAATTAAAAAAA-TAATTATCTCATTCTTTTATGCAACAAATGGCTTCAGGAGTAACTTCTAAG
196 TAAATTAAAAAAATTAATTATCCCATGCTTTTATGCAACTAATGACTTCAGGAGGAACTTCAAAG
* * * * * * * * *
36853357 GAATGAATCAGATTCTATGTCAACT-ATTTATATGACTTCTAGTGTAATTGAAAAATTTTATTGT
261 GAATGAATCAGATTCTATGCCAA-TGACTTATATGAATTCAAGGGTAATTGAAAAGTCTTGTTAT
* *
36853421 TATTTTAAATGTTTATAGTCGGTTAACTATTATTTTTATTATTAGAATAGTAATTCGATTCAA-A
325 TATTTTAAATGTTTATAGTTGATTAACTATTA---TTATTATTAGAATAGTAATTCGATT-AAGA
* *
36853485 TTGGATTATTTTGAATT-AAATTGTTTTAAGCTCAACTTTAGATAAATTATATTTAAATGATAAT
386 TAGAATTATTTTGAATTAAAATT-TTTTAA-CTCAACTTTAGATAAATTATATTTAAATGATAAT
** *
36853549 CGTTTTTTCAATTCTAATATAGTAATATAATTTGATTTTCAAGTGTATCCTAAATAAATTTCTTG
449 AATTTTTTCAATTCTAATATAGTAATATAATTTGATTTTCAAGTGTATCCAAAATAAATTTCTTG
* * * *
36853614 CCCATTGATATTATTTACTTAGTTATGTATTTCTTCTTAAATTAAAAAATTTAATTATCCCACGC
514 -----T-CTACTA---A--TA-TTATGTTTTTCTTATTAAATTAAAAAA-TTAATTATCCCA-GC
* * ** * * * *
36853679 TTTTATTCAACTAATCACTTTTGTAGGAGA-TTCTAAGGAATGAAATAAATTCTATACCAACAAC
565 TTTTATGCAACTAATGACTTAAGGATGA-ACTTCTAAGGAATG-AAT-AATTCTAAACCAATAAC
* * * *
36853743 -TTATATGACTTCAAGGG-AATTGAAAAGGCTTATTGTTATTTTAAATATTTATAGTCACTTAAT
627 TTTATATGACTTCAAGGGTAATTGAAAAGACTTGTTGTTATTTTAAATGTTTATAGTCA-TTAAC
36853806 TATTATT
691 TATTATT
* * * *
36853813 TTTATTATTAAAATAGTAATTCGATTCAAATTGAATTATTTTGAATTAAATTCTTTTAGGCTCGA
1 ATTATTATTAGAATAGTAATTCGATTCAAATTGAATTATCTTGAATT-AATTTTTTTAGGCTCGA
*
36853878 CTTTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATATAGTAATATAATTTGAT
65 CTTTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATAAAGTAATATAATTTGAT
* *
36853943 TTTCAAGTGTATCCTAAATAAGCTTCTTGTCCATTGATATTATTTACTTAGTTATG-TCTT-TT-
130 TTTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATGTTTTTCTTA
* * *
36854005 TTAAATTAAAAAAAATTAATTATCCCATGCTTTTATGCAACTAGTGACTTCAGGTGGAGCTTCTA
195 TTAAATT-AAAAAAATTAATTATCCCATGCTTTTATGCAACTAATGACTTCAGGAGGAACTTC-A
* * * * * ** * * *** **
36854070 AAGAAAAGCAT-TGCTAT-TATTTTCAGTG-TTTATAGTTG-ATT-AACTATTATTATT-ATTAG
258 AAGGAATGAATCAGAT-TCTA-TGCCAATGACTTATA--TGAATTCAA-GGGTA--ATTGAAAAG
** * * * * *
36854129 AATAGTAATTCGA-TTCAAATTGATTTAT-CTTGAATTAA--ATT-TT-TT-TTAG----GT-TT
316 TCTTGTTATT--ATTTTAAA-TG-TTTATAGTTG-ATTAACTATTATTATTATTAGAATAGTAAT
* * * * * *
36854182 TCGATTTTAGATA-AATTATATTTAAATGATAATATTTTTTCAATTCTAA-TTAAATACCATAAT
376 TCGA-TTAAGATAGAATTAT-TTTGAAT--TAAAATTTTTT-AACTC-AACTT---TA-GATAAA
* * * * *
36854245 TTGAT-TTTCAAGTGTATACTAAATAAGTTTCTTGTCCA-T-TAATATTATTTACT-TAGTTATG
431 TT-ATATTT-AAATG---A-T-AATAA-TTT-TT-TCAATTCTAATA-TA-GTAATATAATT-TG
* * ** * * ** * * * *
36854306 -TCTTTCTTATTAAAT-TAAAAAAAATTAATTATC--C-CAT-TT-T-TTTATGC-AATTAATGG
483 AT-TTTC-AAGTGTATCCAAAATAAATTTCTTGTCTACTAATATTATGTTT-TTCTTATTAA---
* *** ** * ** * * * * * * *
36854362 CTTCAGGGAA--AA-CGT-CTAGAC-TAGAAGCAGCTAAAG-CTTAAGCGAGTTACCTCACCAAG
542 ATT-AAAAAATTAATTATCCCAG-CTTTTATGCAACTAATGACTTAAG-GA-TGAACT-TCTAAG
* * * * * * * * *
36854421 AAAAGAA-AAGTCTGAGCGAATTA-TTTTTATGACTTCAAAGGTAATTTG-AAAGACTTGTTGTT
602 GAATGAATAATTCTAAACCAATAACTTTATATGACTTCAAGGGTAA-TTGAAAAGACTTGTTGTT
* *
36854483 ATTTTAAATGTTTTTAGTCCATTAAATACTATTAGT
666 ATTTTAAATGTTTATAGT-CATT--A-ACTATTATT
* * * * * * * *
36854519 AGTAGTAGTGGCATAGTATATT-GATTCAAATAGAATTATTTTGAATTAACTTTTTTTTAGTCTT
1 ATTATTATTAGAATAGTA-ATTCGATTCAAATTGAATTATCTTGAATTAA--TTTTTTTAGGC-T
*
36854583 C-ACGTTAGATAAATTATATTTAAATGATAAT-ATTTTTTCAATTCTAAT-AAGATAATATAATT
62 CGACTTTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATAAAG-TAATATAATT
* * *
36854645 TGATTTTCAAGTGTGTCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAATAATGTTTTT
126 TGATTTTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATGTTTTT
* *
36854710 CTTTTTAAATTAAAAAAATTAATTATCCCATGCTTTTATGCAACTAATGGCTTCAGGAGGAACTT
191 CTTATTAAATTAAAAAAATTAATTATCCCATGCTTTTATGCAACTAATGACTTCAGGAGGAACTT
*
36854775 CAAAGGAATGAAAT-AAATTCTATGCCAATGACTTATATGAATTCAAGGGTAATTGAAAAGTCTT
256 CAAAGGAATG-AATCAGATTCTATGCCAATGACTTATATGAATTCAAGGGTAATTGAAAAGTCTT
36854839 GTTATTATTTTAAATGTTTATAGTTGATTAACTATTATTATTATTAGAATAGTAATTCGATTAAG
320 GTTATTATTTTAAATGTTTATAGTTGATTAACTATTATTATTATTAGAATAGTAATTCGATTAAG
*
36854904 ATAGAATTATTTTGAATTAAAATTTTTTAGACTCGACTTTAGATAAATTATATTTAAATGATAAT
385 ATAGAATTATTTTGAATTAAAATTTTTTA-ACTCAACTTTAGATAAATTATATTTAAATGATAAT
36854969 -ATTTTTTCAATTCTAATATAGTAATATAATTTGATTTTCAAGTGTATCCAAAATAAATTTCTTG
449 AATTTTTTCAATTCTAATATAGTAATATAATTTGATTTTCAAGTGTATCCAAAATAAATTTCTTG
*
36855033 TCTACTAATATTATGTTTTTCTTTTTAAATT-AAAAATTAATTATCCCATGCTTTTATGCAACTA
514 TCTACTAATATTATGTTTTTCTTATTAAATTAAAAAATTAATTATCCCA-GCTTTTATGCAACTA
* * *
36855097 ATGACTTCAGGATGAACTTCTAAGGAATGTAATAGATTCTAAACCAATGACTTATATATGATTTC
578 ATGACTTAAGGATGAACTTCTAAGGAATG-AATA-ATTCTAAACCAATAACTT-TATATGACTTC
*
36855162 AAGGGTAATTGAAAAGCCTTGTTGTTATTTTAAATGTTTATAGTCGATTAACTATTATT
640 AAGGGTAATTGAAAAGACTTGTTGTTATTTTAAATGTTTATAGTC-ATTAACTATTATT
* * * * *
36855221 ATTATTATTTGATTAGCAATTCGATTCAAATTGATTTATCTTGAATTAAGTTTTTTTAGGCTCAA
1 ATTATTATTAGAATAGTAATTCGATTCAAATTGAATTATCTTGAATTAA-TTTTTTTAGGCTCGA
* * *
36855286 CTATAGATAAATTATATTTTAATGATATAT-TTTTTTTCAATTCTAATAAAGTAATATAATTTGA
65 CTTTAGATAAATTATATTTAAATGATA-ATCATTTTTTCAATTCTAATAAAGTAATATAATTTGA
* * * *
36855350 TTTTCAAGTGTATCTTAAATAAGTTTCTTGTCTATTGAAATTATTTACTTAGTTATGTCTTTCTT
129 TTTTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATGTTTTTCTT
* * * * *
36855415 ATTAAATT-AAGAAATTAATTATCCCATGCTTTTATGTAACTAATGACCTCAGGAGGAGCTTCTA
194 ATTAAATTAAAAAAATTAATTATCCCATGCTTTTATGCAACTAATGACTTCAGGAGGAACTTCAA
* * * * *
36855479 AGGAATGAATCAGATTCTATGCCAACGGCTTATATGACTTCAATGGTAATTGAAAAGCCTTGTTA
259 AGGAATGAATCAGATTCTATGCCAATGACTTATATGAATTCAAGGGTAATTGAAAAGTCTTGTTA
36855544 T
324 T
36855545 GTTCACTGTT
Statistics
Matches: 1353, Mismatches: 255, Indels: 260
0.72 0.14 0.14
Matches are distributed among these distances:
695 4 0.00
696 25 0.02
697 12 0.01
698 9 0.01
699 7 0.01
700 18 0.01
701 157 0.12
702 189 0.14
703 71 0.05
704 24 0.02
705 85 0.06
706 152 0.11
707 79 0.06
708 85 0.06
709 13 0.01
710 24 0.02
711 9 0.01
712 19 0.01
713 64 0.05
714 20 0.01
715 61 0.05
716 143 0.11
717 8 0.01
718 13 0.01
719 6 0.00
720 12 0.01
721 8 0.01
722 10 0.01
723 22 0.02
724 4 0.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.44
Consensus pattern (697 bp):
ATTATTATTAGAATAGTAATTCGATTCAAATTGAATTATCTTGAATTAATTTTTTTAGGCTCGAC
TTTAGATAAATTATATTTAAATGATAATCATTTTTTCAATTCTAATAAAGTAATATAATTTGATT
TTCAAGTGTATCCTAAATAAGTTTCTTGTCCATTGATATTATTTACTTAGTTATGTTTTTCTTAT
TAAATTAAAAAAATTAATTATCCCATGCTTTTATGCAACTAATGACTTCAGGAGGAACTTCAAAG
GAATGAATCAGATTCTATGCCAATGACTTATATGAATTCAAGGGTAATTGAAAAGTCTTGTTATT
ATTTTAAATGTTTATAGTTGATTAACTATTATTATTATTAGAATAGTAATTCGATTAAGATAGAA
TTATTTTGAATTAAAATTTTTTAACTCAACTTTAGATAAATTATATTTAAATGATAATAATTTTT
TCAATTCTAATATAGTAATATAATTTGATTTTCAAGTGTATCCAAAATAAATTTCTTGTCTACTA
ATATTATGTTTTTCTTATTAAATTAAAAAATTAATTATCCCAGCTTTTATGCAACTAATGACTTA
AGGATGAACTTCTAAGGAATGAATAATTCTAAACCAATAACTTTATATGACTTCAAGGGTAATTG
AAAAGACTTGTTGTTATTTTAAATGTTTATAGTCATTAACTATTATT
Found at i:36855575 original size:3 final size:3
Alignment explanation
Indices: 36855567--36855597 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
36855557 TAGTCGATTA
*
36855567 ACT ACT ACT ACG ACT ACT ACT ACT ACT ACT A
1 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT A
36855598 TTACATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.32, G:0.03, T:0.29
Consensus pattern (3 bp):
ACT
Found at i:36857716 original size:18 final size:18
Alignment explanation
Indices: 36857695--36857735 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
36857685 ACTTGTTAAT
36857695 TTTTTAAATATTTATATA
1 TTTTTAAATATTTATATA
** *
36857713 TTTTTAGTTTTTTATATA
1 TTTTTAAATATTTATATA
36857731 TTTTT
1 TTTTT
36857736 TAGAATCATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTTTAAATATTTATATA
Found at i:36863920 original size:17 final size:17
Alignment explanation
Indices: 36863900--36863943 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
36863890 TTAAAAGAGT
*
36863900 TTTAAATTTATTTTAAA
1 TTTAAATTTACTTTAAA
36863917 TTTAAATTTACTTTAAA
1 TTTAAATTTACTTTAAA
*
36863934 TTTAAGTTTA
1 TTTAAATTTA
36863944 ATCAAATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
TTTAAATTTACTTTAAA
Found at i:36864056 original size:24 final size:27
Alignment explanation
Indices: 36863999--36864058 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
36863989 ATTTACAAAT
*
36863999 GTCCAATTACAAACAAACCCAAATTGGG
1 GTCCAATTACAAACAAACCC-AATTGCG
*
36864027 GCCCAATTACAAACAAACCC-A-T-CG
1 GTCCAATTACAAACAAACCCAATTGCG
36864051 GTCCAATT
1 GTCCAATT
36864059 GGCCCAAACC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 8 0.28
25 1 0.03
26 1 0.03
28 19 0.66
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.18
Consensus pattern (27 bp):
GTCCAATTACAAACAAACCCAATTGCG
Found at i:36865799 original size:162 final size:162
Alignment explanation
Indices: 36865494--36865810 Score: 399
Period size: 162 Copynumber: 2.0 Consensus size: 162
36865484 AATGTGTAAC
* ***
36865494 TGCACCAGAGGCTGCCACGTGTCATTCTTTCAGATTATTTTGTATTTAGTCCCTGTTGTGTTTAA
1 TGCACCAGAGGCTGCCACGTGTCATTCTTTCAGATTATTTTGTATCTAGTCCCTGCCATGTTTAA
* * * *
36865559 TTTGTTTTAATTTAATCATCAAATCAACTTTTGCTTAATTACAAAATTAACCCTGGAATCTTTTG
66 TTTGTTTTAAATTAATCATCAAATCAACTTTTACTTAATTACAAAATTAACCCTAGAATCTTTTA
* *
36865624 AGATTTTTAAATTAGTCCTTTGACTGTTTGAG
131 AGATTTATAAATTAGTCATTTGACTGTTTGAG
* * * *
36865656 TGCACCAGAGGCTGCCATGTGTCACTT-TTT-GGCTTATTTATGTATCTAGTCCCTGCCATTTTT
1 TGCACCAGAGGCTGCCACGTGTCA-TTCTTTCAGATTATTT-TGTATCTAGTCCCTGCCATGTTT
* * * **
36865719 AATTTGTTTTAAATTAATCCTTAAATCAACTTTTATTTAATTACAAAATT-GGCCTAAGAAT-TT
64 AATTTGTTTTAAATTAATCATCAAATCAACTTTTACTTAATTACAAAATTAACCCT-AGAATCTT
36865782 TTCAAGATTTATAAATTAGTCATTTGACT
128 TT-AAGATTTATAAATTAGTCATTTGACT
36865811 TCTGGATGCC
Statistics
Matches: 132, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
161 14 0.11
162 116 0.88
163 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.44
Consensus pattern (162 bp):
TGCACCAGAGGCTGCCACGTGTCATTCTTTCAGATTATTTTGTATCTAGTCCCTGCCATGTTTAA
TTTGTTTTAAATTAATCATCAAATCAACTTTTACTTAATTACAAAATTAACCCTAGAATCTTTTA
AGATTTATAAATTAGTCATTTGACTGTTTGAG
Found at i:36865975 original size:59 final size:58
Alignment explanation
Indices: 36865881--36866369 Score: 584
Period size: 59 Copynumber: 8.3 Consensus size: 58
36865871 CCTGGATAGT
* * * *
36865881 CCAAAAATTACCATTTTACCCTTAAACTTTTCAAAATTCTATTTTTAACCTCGGTTTCA
1 CCAAAAATTACCATTTTACCC-CAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* *
36865940 CCAAAAATTACCATTTTATCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTA-CCCCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
*
36865999 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCC-AAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* * * * *
36866058 CCCAAAATTACCATTTTACCCTTAAACTTTCCTAAATTCCA-TTTTAACCTCAATTTTA
1 CCAAAAATTACCATTTTACCC-CAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* ** * * *
36866116 CCCAAAATTAATATTTTACCCCTAAACTTTTCTAAATTTCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCC-AAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* * *
36866175 CCAAAAATTACCATCTTACCCCTTGAACTTTCCAAAATTTCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCC--AAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* * * * * *
36866235 CCAAAAGTTACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTGATCTTGATTTCA
1 CCAAAAATTACCATTTTA-CCCCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* * * * * *
36866294 CCAAAAATTACTATTTTACCCTTAAATTTTCTAAAATTCCATTTTTAACCCCGATTTTA
1 CCAAAAATTACCATTTTACCC-CAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
*
36866353 CCGAAAATTACCATTTT
1 CCAAAAATTACCATTTT
36866370 GCCTCACGAG
Statistics
Matches: 374, Mismatches: 48, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
58 56 0.15
59 261 0.70
60 53 0.14
61 4 0.01
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.38
Consensus pattern (58 bp):
CCAAAAATTACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
Found at i:36866250 original size:31 final size:30
Alignment explanation
Indices: 36865912--36866369 Score: 148
Period size: 30 Copynumber: 15.5 Consensus size: 30
36865902 TTAAACTTTT
* *
36865912 CAAAATT-CTATTTTTAACCTCGGTTTCAC
1 CAAAATTACCATTTTTAACCTCGATTTCAC
* *
36865941 CAAAAATTACCA-TTTTATCCCCGAACTTT--C
1 C-AAAATTACCATTTTTAACCTCG-A-TTTCAC
*
36865971 CAAAATT-CCATTTTTAACCCCGATTTCAC
1 CAAAATTACCATTTTTAACCTCGATTTCAC
* **
36866000 CAAAAATTACCA-TTTTACCCCTAAACTTT--C
1 C-AAAATTACCATTTTTA-ACCTCGA-TTTCAC
*
36866030 CAAAATT-CCATTTTTAACCCCGATTTCACC
1 CAAAATTACCATTTTTAACCTCGATTTCA-C
* **
36866060 CAAAATTACCA-TTTTACCCTTAAACTTT--C
1 CAAAATTACCATTTTTAACC-TCGA-TTTCAC
* * *
36866089 CTAAATT-CCA-TTTTAACCTCAATTTTACC
1 CAAAATTACCATTTTTAACCTCGATTTCA-C
* ** *
36866118 CAAAATTA--ATATTTTACCCCTAAACTTT--T
1 CAAAATTACCAT-TTTTA-ACCTCGA-TTTCAC
* *
36866147 CTAAATT-TCATTTTTAACCTCGATTTCAC
1 CAAAATTACCATTTTTAACCTCGATTTCAC
* * *
36866176 CAAAAATTACCA-TCTTACCCCTTGAACTTT--C
1 C-AAAATTACCATTTTTA-ACCTCG-A-TTTCAC
*
36866207 CAAAATT-TCATTTTTAACCTCGATTTCAC
1 CAAAATTACCATTTTTAACCTCGATTTCAC
* *
36866236 CAAAAGTTACCA-TTTTACCCCCGAACTTT--C
1 CAAAA-TTACCATTTTTAACCTCG-A-TTTCAC
* * * *
36866266 CAAAATT-CTATTTTTGATCTTGATTTCAC
1 CAAAATTACCATTTTTAACCTCGATTTCAC
* * ** *
36866295 CAAAAATTACTA-TTTTACCCTTAAATTT-TC
1 C-AAAATTACCATTTTTAACC-TCGATTTCAC
* * *
36866325 TAAAATT-CCATTTTTAACCCCGATTTTAC
1 CAAAATTACCATTTTTAACCTCGATTTCAC
36866354 CGAAAATTACCATTTT
1 C-AAAATTACCATTTT
36866370 GCCTCACGAG
Statistics
Matches: 316, Mismatches: 61, Indels: 102
0.66 0.13 0.21
Matches are distributed among these distances:
26 3 0.01
27 18 0.06
28 35 0.11
29 92 0.29
30 106 0.34
31 43 0.14
32 16 0.05
33 3 0.01
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.38
Consensus pattern (30 bp):
CAAAATTACCATTTTTAACCTCGATTTCAC
Found at i:36866504 original size:15 final size:16
Alignment explanation
Indices: 36866477--36866522 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 16
36866467 GTTTATTTGC
*
36866477 ATCTGCATTTTATATT
1 ATCTGCATATTATATT
*
36866493 TTC-GCATATTAT-TT
1 ATCTGCATATTATATT
*
36866507 ATCTGCTTATTATATT
1 ATCTGCATATTATATT
36866523 GCTTCGTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
14 4 0.17
15 16 0.67
16 4 0.17
ACGTcount: A:0.24, C:0.13, G:0.07, T:0.57
Consensus pattern (16 bp):
ATCTGCATATTATATT
Found at i:36878582 original size:40 final size:41
Alignment explanation
Indices: 36878526--36878676 Score: 130
Period size: 40 Copynumber: 3.5 Consensus size: 41
36878516 ATTTTTCTAT
36878526 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
* * *
36878567 CCTC-TGAAATTGAAGTAAGAG-TAGGAAGAAGGACCAA-CATCATTTTCCTAT
1 CCTCTTGAAATTGAAGTAA-AGCT-GG-A-TA--A-CAAGC--C---TTCGT-C
36878618 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
36878659 CCTC-TGAAATTGAAGTAA
1 CCTCTTGAAATTGAAGTAA
36878677 GAGTAAGAAG
Statistics
Matches: 88, Mismatches: 6, Indels: 33
0.69 0.05 0.26
Matches are distributed among these distances:
40 29 0.33
41 12 0.14
42 5 0.06
43 1 0.01
45 3 0.03
46 6 0.07
47 3 0.03
49 1 0.01
50 5 0.06
51 8 0.09
52 15 0.17
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.26
Consensus pattern (41 bp):
CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
Found at i:36878665 original size:92 final size:91
Alignment explanation
Indices: 36878508--36879013 Score: 832
Period size: 92 Copynumber: 5.5 Consensus size: 91
36878498 TCACGTCAAT
*
36878508 CCAACATCATTTTTCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCTG
1 CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCTG
*
36878573 AAATTGAAGTAAGAGTAGGAAGAAGGA
66 AAATTGAAGTAAGAGTA-GAAGAAGCA
36878600 CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCTG
1 CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCTG
*
36878665 AAATTGAAGTAAGAGTAAGAAGAAGGA
66 AAATTGAAGTAAGAGT-AGAAGAAGCA
* * *
36878692 CCAACATTATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAATAAGCCTTCGTCCCTCAG
1 CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCTG
*
36878757 AAATTGAAGTAAGAGTAAAATGAAGCA
66 AAATTGAAGTAAGAGTAGAA-GAAGCA
*
36878784 CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCAG
1 CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCTG
*
36878849 AAATTGAAGTAAGAGTAAAATGAAGCA
66 AAATTGAAGTAAGAGTAGAA-GAAGCA
*
36878876 CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGAAAACAAGCCTTCGTCCCTCTG
1 CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCTG
* *
36878941 AAATTGAAGTGAGAGTAAGATGAAGCA
66 AAATTGAAGTAAGAGT-AGAAGAAGCA
* * *
36878968 CAAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGCTCGATA
1 CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATA
36879014 TCAAATCATT
Statistics
Matches: 394, Mismatches: 17, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
91 3 0.01
92 388 0.98
93 3 0.01
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (91 bp):
CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCTG
AAATTGAAGTAAGAGTAGAAGAAGCA
Found at i:36878818 original size:52 final size:52
Alignment explanation
Indices: 36878756--36878912 Score: 160
Period size: 52 Copynumber: 3.2 Consensus size: 52
36878746 TCGTCCCTCA
36878756 GAAATTGAAGTAAGAGTAAAATGAAGCACCAACATCATTTTCCTATCCTCTT
1 GAAATTGAAGTAAGAGTAAAATGAAGCACCAACATCATTTTCCTATCCTCTT
** * * * *
36878808 GAAATTGAAGTAA-AGCT-GGAT-AA-CA--AGC--C---TTCGT-CCCTC-A
1 GAAATTGAAGTAAGAG-TAAAATGAAGCACCAACATCATTTTCCTATCCTCTT
36878848 GAAATTGAAGTAAGAGTAAAATGAAGCACCAACATCATTTTCCTATCCTCTT
1 GAAATTGAAGTAAGAGTAAAATGAAGCACCAACATCATTTTCCTATCCTCTT
36878900 GAAATTGAAGTAA
1 GAAATTGAAGTAA
36878913 AGCTGGAAAA
Statistics
Matches: 79, Mismatches: 12, Indels: 28
0.66 0.10 0.24
Matches are distributed among these distances:
40 14 0.18
41 8 0.10
42 6 0.08
43 2 0.03
45 3 0.04
47 3 0.04
49 2 0.03
50 6 0.08
51 8 0.10
52 27 0.34
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (52 bp):
GAAATTGAAGTAAGAGTAAAATGAAGCACCAACATCATTTTCCTATCCTCTT
Found at i:36879349 original size:11 final size:11
Alignment explanation
Indices: 36879335--36879404 Score: 52
Period size: 11 Copynumber: 6.0 Consensus size: 11
36879325 TTTAAAAGGG
36879335 TTTTAAATTTA
1 TTTTAAATTTA
36879346 TTTTAAATTTAA
1 TTTTAAATTT-A
* *
36879358 ATTT-ATTTTAA
1 TTTTAAATTT-A
*
36879369 ATTTAAATTTA
1 TTTTAAATTTA
36879380 CTCATTTAAATTTA
1 -T--TTTAAATTTA
*
36879394 CTTTAAATTTA
1 TTTTAAATTTA
36879405 AGTTTAATCA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
11 31 0.63
12 8 0.16
14 10 0.20
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAAATTTA
Found at i:36879356 original size:6 final size:6
Alignment explanation
Indices: 36879336--36879411 Score: 68
Period size: 6 Copynumber: 12.8 Consensus size: 6
36879326 TTAAAAGGGT
* * *
36879336 TTTAAA TTT-AT TTTAAA TTTAAA TTT-AT TTTAAA TTTAAA TTTACTCA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA--AA
* *
36879384 TTTAAA TTT-AC TTTAAA TTTAAG TTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAA
36879412 TCAAATTTAA
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
5 12 0.21
6 39 0.70
8 5 0.09
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:36879356 original size:17 final size:17
Alignment explanation
Indices: 36879336--36879410 Score: 93
Period size: 17 Copynumber: 4.6 Consensus size: 17
36879326 TTAAAAGGGT
36879336 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
36879353 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* *
36879370 TTTAAATTTA--CT-CA
1 TTTAAATTTATTTTAAA
*
36879384 TTTAAATTTACTTTAAA
1 TTTAAATTTATTTTAAA
*
36879401 TTTAAGTTTA
1 TTTAAATTTA
36879411 ATCAAATTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
14 11 0.22
15 1 0.02
16 1 0.02
17 37 0.74
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.56
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:36879388 original size:14 final size:14
Alignment explanation
Indices: 36879369--36879395 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36879359 TTTATTTTAA
36879369 ATTTAAATTTACTC
1 ATTTAAATTTACTC
36879383 ATTTAAATTTACT
1 ATTTAAATTTACT
36879396 TTAAATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTTAAATTTACTC
Found at i:36879390 original size:31 final size:31
Alignment explanation
Indices: 36879352--36879410 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
36879342 TTTATTTTAA
*
36879352 ATTTAAATTTATTTTAAATTTAAATTTACTC
1 ATTTAAATTTACTTTAAATTTAAATTTACTC
*
36879383 ATTTAAATTTACTTTAAATTTAAGTTTA
1 ATTTAAATTTACTTTAAATTTAAATTTA
36879411 ATCAAATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (31 bp):
ATTTAAATTTACTTTAAATTTAAATTTACTC
Found at i:36879520 original size:24 final size:27
Alignment explanation
Indices: 36879468--36879525 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
36879458 TTACAAATGT
*
36879468 CCAATTACAAACAAACCCAAATTGGGGC
1 CCAATTACAAACAAACCC-AATTGCGGC
36879496 CCAATTACAAACAAACCC-A-T-CGGC
1 CCAATTACAAACAAACCCAATTGCGGC
36879520 CCAATT
1 CCAATT
36879526 GGCCCAAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 9 0.31
25 1 0.03
26 1 0.03
28 18 0.62
ACGTcount: A:0.41, C:0.33, G:0.10, T:0.16
Consensus pattern (27 bp):
CCAATTACAAACAAACCCAATTGCGGC
Found at i:36880114 original size:19 final size:19
Alignment explanation
Indices: 36880092--36880150 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
36880082 CAATAATTAA
36880092 TAATAATAATAATAAATTT
1 TAATAATAATAATAAATTT
* * **
36880111 TAATGACAATAA-ATGCTTT
1 TAATAATAATAATA-AATTT
36880130 TAATAATAATAATAATATTT
1 TAATAATAATAATAA-ATTT
36880150 T
1 T
36880151 TTTGAAAAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 5
0.69 0.19 0.12
Matches are distributed among these distances:
18 1 0.03
19 23 0.79
20 5 0.17
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.42
Consensus pattern (19 bp):
TAATAATAATAATAAATTT
Found at i:36881135 original size:162 final size:162
Alignment explanation
Indices: 36880934--36881237 Score: 405
Period size: 162 Copynumber: 1.9 Consensus size: 162
36880924 TTTTAATTGG
*
36880934 TTTTTAATTTAATCCCTCGACTGTGTAACTGCACCAGAGGCTGCCACGTGTCA-TTCTTTCGGAT
1 TTTTTAAATTAATCCCTCGACTGTGTAACTGCACCAGAGGCTGCCACGTGTCACTT-TTT-GGAT
* *** *
36880998 TATTT-TGCATTTAGTCCCTGTTGTGTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTGC
64 TATTTATGCATCTAGTCCCTGCCATGTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTAC
*
36881062 TTAATTACAAAATTAACCCTAGAATCTTTTGAGA
129 TTAATTAAAAAATTAACCCTAGAATCTTTTGAGA
* * * * * *
36881096 TTTTTAAATTAGTCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCACTTTTTGGCTTA
1 TTTTTAAATTAATCCCTCGACTGTGTAACTGCACCAGAGGCTGCCACGTGTCACTTTTTGGATTA
* * * * * *
36881161 TTTATGTATCTAGTCTCTGCCATTTTTAATTTGTTTTTATTTAATCCTTAAATCAACTTTTATTT
66 TTTATGCATCTAGTCCCTGCCATGTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTACTT
36881226 AATTAAAAAATT
131 AATTAAAAAATT
36881238 GGCCCAAGAG
Statistics
Matches: 121, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
161 8 0.07
162 111 0.92
163 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.13, T:0.44
Consensus pattern (162 bp):
TTTTTAAATTAATCCCTCGACTGTGTAACTGCACCAGAGGCTGCCACGTGTCACTTTTTGGATTA
TTTATGCATCTAGTCCCTGCCATGTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTACTT
AATTAAAAAATTAACCCTAGAATCTTTTGAGA
Found at i:36881268 original size:162 final size:162
Alignment explanation
Indices: 36880952--36881271 Score: 403
Period size: 162 Copynumber: 2.0 Consensus size: 162
36880942 TTAATCCCTC
*
36880952 GACTGTGTAACTGCACCAGAGGCTGCCACGTGTCATTCTTTCGGATTATTTTGCATTTAGTCCCT
1 GACTGTGTAACTGCACCAGAGGCTGCCACGTGTCATTCTTTCGGATTATTTTGCATCTAGTCCCT
*** * * *
36881017 GTTGTGTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTGCTTAATTACAAAATTAACCCT
66 GCCATGTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTACTTAATTAAAAAATTAACCCA
* *
36881082 AGAATCTTTTGAGATTTTTAAATTAGTCCTTT
131 AGAATCTTTTAAGATTTATAAATTAGTCCTTT
* * * * *
36881114 GACTGTTTGACTGCACCAGAGGCTGCCACGTGTCACTT-TTT-GGCTTATTTATGTATCTAGTCT
1 GACTGTGTAACTGCACCAGAGGCTGCCACGTGTCA-TTCTTTCGGATTATTT-TGCATCTAGTCC
* * * * **
36881177 CTGCCATTTTTAATTTGTTTTTATTTAATCCTTAAATCAACTTTTATTTAATTAAAAAATTGGCC
64 CTGCCATGTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTACTTAATTAAAAAATTAACC
*
36881242 CAAGAGT-TTTTCAAGATTTATAAATTAGTC
129 CAAGAATCTTTT-AAGATTTATAAATTAGTC
36881272 TTTTAACTTC
Statistics
Matches: 134, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
161 12 0.09
162 120 0.90
163 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (162 bp):
GACTGTGTAACTGCACCAGAGGCTGCCACGTGTCATTCTTTCGGATTATTTTGCATCTAGTCCCT
GCCATGTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTTTACTTAATTAAAAAATTAACCCA
AGAATCTTTTAAGATTTATAAATTAGTCCTTT
Found at i:36881385 original size:29 final size:27
Alignment explanation
Indices: 36881353--36881746 Score: 165
Period size: 29 Copynumber: 13.5 Consensus size: 27
36881343 GGATGGTCCA
36881353 AAAATTACCATTTTACCCTTAAACTTTCC
1 AAAATT-CCATTTTACCC-TAAACTTTCC
* * ***
36881382 AAAATTCTATTTTTAACCT-CGGTTTCACC
1 AAAATTCCA-TTTTACCCTAAACTTT--CC
36881411 AAAAATTACCATTTTACCCCTAAACTTTCC
1 -AAAATT-CCATTTTA-CCCTAAACTTTCC
**
36881441 AAAATTCCATTTTTAACCC-CGA-TTTCACC
1 AAAATTCCA-TTTT-ACCCTAAACTTT--CC
36881470 AAAAATTACCATTTTACCCCTAAACTTTCC
1 -AAAATT-CCATTTTA-CCCTAAACTTTCC
*
36881500 AAAATTCCATTTTAACCCT-AA-TTCACCC
1 AAAATTCCATTTT-ACCCTAAACTT--TCC
36881528 AAAATTACCATTTTACCCTTAAACTTTCC
1 AAAATT-CCATTTTACCC-TAAACTTTCC
* ** *
36881557 TAAATTCCATTTTAACCC-CGATTTTACC
1 AAAATTCCATTTT-ACCCTAAACTTT-CC
* *
36881585 TAAAATTACCTTTTTACCCCTAAACTTTCT
1 -AAAATT-CCATTTTA-CCCTAAACTTTCC
* * **
36881615 TAAATTCCATTTTTAACCTCGA-TTTCACC
1 AAAATTCCA-TTTTACCCTAAACTTT--CC
* *
36881644 AAAAATTACCATCTTATCCCTTGAACTTTCC
1 -AAAATT-CCATTTTA-CCC-TAAACTTTCC
* **
36881675 AAAATTCCATTTTTAACCTCGA-TTTCACC
1 AAAATTCCA-TTTTACCCTAAACTTT--CC
**
36881704 AAAAGTTACCATTTTACCCCCGAACTTTCC
1 AAAA-TT-CCATTTTA-CCCTAAACTTTCC
36881734 AAAATTCCATTTT
1 AAAATTCCATTTT
36881747 CGATCTCTAT
Statistics
Matches: 276, Mismatches: 45, Indels: 89
0.67 0.11 0.22
Matches are distributed among these distances:
26 2 0.01
27 18 0.07
28 54 0.20
29 87 0.32
30 73 0.26
31 28 0.10
32 11 0.04
33 3 0.01
ACGTcount: A:0.32, C:0.28, G:0.02, T:0.37
Consensus pattern (27 bp):
AAAATTCCATTTTACCCTAAACTTTCC
Found at i:36881442 original size:59 final size:59
Alignment explanation
Indices: 36881350--36881841 Score: 641
Period size: 59 Copynumber: 8.4 Consensus size: 59
36881340 CCTGGATGGT
* * *
36881350 CCAAAAATTACCATTTTACCCTTAAACTTTCCAAAATTCTATTTTTAACCTCGGTTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
*
36881409 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* *
36881468 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCA-TTTTAACC-CTAATTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* * * * *
36881525 CCCAAAATTACCATTTTACCCTTAAACTTTCCTAAATTCCA-TTTTAACCCCGATTTTA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* * **
36881583 CCTAAAATTACCTTTTTACCCCTAAACTTTCTTAAATTCCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* * *
36881642 CCAAAAATTACCATCTTATCCCTTGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTA-CCCCTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* ** ** * * *
36881702 CCAAAAGTTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTCGATCTCTATTTGA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* * * **
36881761 CCAAAAATTACTATTTTA-CCCTCAAATTTTCTAAAATTCCATTTTTAACCTCGATTTTG
1 CCAAAAATTACCATTTTACCCCT-AAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
* *
36881820 CCAAAAAGTACCATTTTGCCCC
1 CCAAAAATTACCATTTTACCCC
36881842 ACGAGTCCAA
Statistics
Matches: 379, Mismatches: 49, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
57 52 0.14
58 53 0.14
59 218 0.58
60 56 0.15
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
Found at i:36881716 original size:31 final size:30
Alignment explanation
Indices: 36881380--36881836 Score: 139
Period size: 29 Copynumber: 15.5 Consensus size: 30
36881370 CTTAAACTTT
* *
36881380 CCAAAATT-CTATTTTTAACCTCGGTTTCA
1 CCAAAATTACCATTTTTAACCTCGATTTCA
* **
36881409 CCAAAAATTACCA-TTTTACCCCTAAACTTT--
1 CC-AAAATTACCATTTTTA-ACCTCGA-TTTCA
*
36881439 CCAAAATT-CCATTTTTAACCCCGATTTCA
1 CCAAAATTACCATTTTTAACCTCGATTTCA
* **
36881468 CCAAAAATTACCA-TTTTACCCCTAAACTTT--
1 CC-AAAATTACCATTTTTA-ACCTCGA-TTTCA
* *
36881498 CCAAAATT-CCA-TTTTAACC-CTAATTCA
1 CCAAAATTACCATTTTTAACCTCGATTTCA
* **
36881525 CCCAAAATTACCA-TTTTACCCTTAAACTTT--
1 -CCAAAATTACCATTTTTAACC-TCGA-TTTCA
* * *
36881555 CCTAAATT-CCA-TTTTAACCCCGATTTTA
1 CCAAAATTACCATTTTTAACCTCGATTTCA
* **
36881583 CCTAAAATTACC-TTTTTACCCCTAAACTTT--
1 CC-AAAATTACCATTTTTA-ACCTCGA-TTTCA
**
36881613 CTTAAATT-CCATTTTTAACCTCGATTTCA
1 CCAAAATTACCATTTTTAACCTCGATTTCA
* * *
36881642 CCAAAAATTACCA-TCTTATCCCTTGAACTTT--
1 CC-AAAATTACCATTTTTA-ACCTCG-A-TTTCA
36881673 CCAAAATT-CCATTTTTAACCTCGATTTCA
1 CCAAAATTACCATTTTTAACCTCGATTTCA
* *
36881702 CCAAAAGTTACCA-TTTTACCCCCGAACTTT--
1 CCAAAA-TTACCATTTTTAACCTCG-A-TTTCA
** * * *
36881732 CCAAAATT-CCATTTTCGATCTCTATTTGA
1 CCAAAATTACCATTTTTAACCTCGATTTCA
* * * *
36881761 CCAAAAATTACTA-TTTTACCCTCAAATTT-T
1 CC-AAAATTACCATTTTTAACCTC-GATTTCA
* **
36881791 CTAAAATT-CCATTTTTAACCTCGATTTTG
1 CCAAAATTACCATTTTTAACCTCGATTTCA
*
36881820 CCAAAAAGTACCATTTT
1 CC-AAAATTACCATTTT
36881837 GCCCCACGAG
Statistics
Matches: 312, Mismatches: 66, Indels: 98
0.66 0.14 0.21
Matches are distributed among these distances:
25 2 0.01
26 4 0.01
27 15 0.05
28 51 0.16
29 93 0.30
30 88 0.28
31 41 0.13
32 15 0.05
33 3 0.01
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (30 bp):
CCAAAATTACCATTTTTAACCTCGATTTCA
Found at i:36884549 original size:17 final size:17
Alignment explanation
Indices: 36884527--36884561 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
36884517 TTTGCTCATG
36884527 TATATTCTTTTTTACTT
1 TATATTCTTTTTTACTT
* *
36884544 TATATTTTTTTTTCCTT
1 TATATTCTTTTTTACTT
36884561 T
1 T
36884562 CTTCTTTCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.74
Consensus pattern (17 bp):
TATATTCTTTTTTACTT
Found at i:36885661 original size:17 final size:17
Alignment explanation
Indices: 36885636--36885669 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36885626 ACTAATGATA
*
36885636 TAATTTATCAAAAATAT
1 TAATATATCAAAAATAT
*
36885653 TAATATATCATAAATAT
1 TAATATATCAAAAATAT
36885670 AAAAATTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATATATCAAAAATAT
Found at i:36885859 original size:19 final size:19
Alignment explanation
Indices: 36885832--36885873 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
36885822 GTCTTATTAA
*
36885832 AAAT-ATTTTT-TAAAAAT
1 AAATAATTTTTGTTAAAAT
*
36885849 AAATAATTTTTGTTAATAT
1 AAATAATTTTTGTTAAAAT
36885868 AAATAA
1 AAATAA
36885874 ATATTGAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 4 0.19
18 6 0.29
19 11 0.52
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
AAATAATTTTTGTTAAAAT
Found at i:36887030 original size:42 final size:42
Alignment explanation
Indices: 36886920--36887127 Score: 258
Period size: 42 Copynumber: 4.8 Consensus size: 42
36886910 GACAAAGAAA
* * * *
36886920 GATGAACCATCCGATGATTCGGAAGATGAGGATTTGGAGAGGGGGCTG
1 GATGAATCATCCGATGATTCGAAAGATGAGGA-TT-----GGGTGCCG
*
36886968 GATGAACCATCC-AGTGATTCGAAAGATGAGGATTGGGTGCCG
1 GATGAATCATCCGA-TGATTCGAAAGATGAGGATTGGGTGCCG
* *
36887010 GATGAATCATCCGATTATTCGAAAGATGAGGATTGGGTACCG
1 GATGAATCATCCGATGATTCGAAAGATGAGGATTGGGTGCCG
36887052 GATGAATCATCCGATGATTCGAAAGATGAGGATTGGGTGCCG
1 GATGAATCATCCGATGATTCGAAAGATGAGGATTGGGTGCCG
*
36887094 GATAAATCATCCGATGATTC-AGAAGATGAGGATT
1 GATGAATCATCCGATGATTCGA-AAGATGAGGATT
36887128 TGGAGAGGGG
Statistics
Matches: 148, Mismatches: 9, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
41 1 0.01
42 114 0.77
43 1 0.01
47 3 0.02
48 29 0.20
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.24
Consensus pattern (42 bp):
GATGAATCATCCGATGATTCGAAAGATGAGGATTGGGTGCCG
Found at i:36897419 original size:13 final size:13
Alignment explanation
Indices: 36897401--36897426 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36897391 TTCAATGACC
36897401 TTGTCATAAGTAT
1 TTGTCATAAGTAT
36897414 TTGTCATAAGTAT
1 TTGTCATAAGTAT
36897427 GTTACCCTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
TTGTCATAAGTAT
Found at i:36902152 original size:59 final size:58
Alignment explanation
Indices: 36902092--36902342 Score: 315
Period size: 59 Copynumber: 4.3 Consensus size: 58
36902082 TTCGGGAGTA
*
36902092 AAAATGTAATTTTTGGTGAAATTAGGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGT
1 AAAATGTAATTTTTGGTGAAATTAGGGTCAAAAATGGAATTTTGGAAAGTTCAGGGGT
* * * * * *
36902150 AAAACAGTAATTTTTGGTGAAA-TCGGGGCTAAAAATGGGATTTTGGAAAGTTCAAGGAT
1 AAAA-TGTAATTTTTGGTGAAATTAGGGTC-AAAAATGGAATTTTGGAAAGTTCAGGGGT
* * * * **
36902209 AAAATGGTAATTTTTGGGGAAATTGGGGTTAAAAATGGAATTTTGGTAAGTTTGGGGGT
1 AAAAT-GTAATTTTTGGTGAAATTAGGGTCAAAAATGGAATTTTGGAAAGTTCAGGGGT
* * *
36902268 AAAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
1 AAAAT-GTAATTTTTGGTGAAATTAGGGTCAAAAATGGAATTTTGGAAAGTTCAGGGGT
36902327 AAAATGTAATTTTTGG
1 AAAATGTAATTTTTGG
36902343 ACAGTTCAAG
Statistics
Matches: 166, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
58 20 0.12
59 142 0.86
60 4 0.02
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (58 bp):
AAAATGTAATTTTTGGTGAAATTAGGGTCAAAAATGGAATTTTGGAAAGTTCAGGGGT
Found at i:36902267 original size:118 final size:117
Alignment explanation
Indices: 36902092--36902342 Score: 376
Period size: 118 Copynumber: 2.1 Consensus size: 117
36902082 TTCGGGAGTA
*
36902092 AAAATGTAATTTTTGGTGAAATTAGGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAACAG
1 AAAATGTAATTTTTGGGGAAATTAGGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAACAG
* *
36902157 TAATTTTTGGTGAAATCGGGGCTAAAAATGGGATTTTGGAAAGTTCAAGGAT
66 TAATTTTTGGTGAAATCAGGGCTAAAAATGGAATTTTGGAAAGTTCAAGGAT
* * * * **
36902209 AAAATGGTAATTTTTGGGGAAATTGGGGTTAAAAATGGAATTTTGGTAAGTTTGGGGGTAAAATG
1 AAAAT-GTAATTTTTGGGGAAATTAGGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAACA
* ** *
36902274 GTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
65 GTAATTTTTGGTGAAATCAGGGCTAAAAATGGAATTTTGGAAAGTTCAAGGAT
36902327 AAAATGTAATTTTTGG
1 AAAATGTAATTTTTGG
36902343 ACAGTTCAAG
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
117 16 0.13
118 104 0.87
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (117 bp):
AAAATGTAATTTTTGGGGAAATTAGGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAACAG
TAATTTTTGGTGAAATCAGGGCTAAAAATGGAATTTTGGAAAGTTCAAGGAT
Found at i:36902313 original size:29 final size:30
Alignment explanation
Indices: 36902090--36902311 Score: 151
Period size: 30 Copynumber: 7.5 Consensus size: 30
36902080 CTTTCGGGAG
*
36902090 TAAAAATGTAATTTTTGGTGAAATTAGGGT
1 TAAAAATGGAATTTTTGGTGAAATTAGGGT
* *
36902120 CAAAAATGGAA-TTTT-G-GAAAGTTTAGGGG
1 TAAAAATGGAATTTTTGGTGAAA--TTAGGGT
* ** *
36902149 TAAAACA-GTAATTTTTGGTGAAATCGGGGC
1 TAAAA-ATGGAATTTTTGGTGAAATTAGGGT
* * *
36902179 TAAAAATGGGA-TTTT-G-GAAAGTTCAAGGA
1 TAAAAATGGAATTTTTGGTGAAA-TT-AGGGT
* *
36902208 T-AAAATGGTAATTTTTGGGGAAATTGGGGT
1 TAAAAATGG-AATTTTTGGTGAAATTAGGGT
* * *
36902238 TAAAAATGGAA-TTTTGGT-AAGTTTGGGGG
1 TAAAAATGGAATTTTTGGTGAA-ATTAGGGT
*
36902267 T-AAAATGGTAATTTTTGGTGAAATCAGGGT
1 TAAAAATGG-AATTTTTGGTGAAATTAGGGT
36902297 TAAAAATGGAATTTT
1 TAAAAATGGAATTTT
36902312 GGAAAGTTCG
Statistics
Matches: 148, Mismatches: 25, Indels: 38
0.70 0.12 0.18
Matches are distributed among these distances:
27 8 0.05
28 19 0.13
29 41 0.28
30 52 0.35
31 20 0.14
32 8 0.05
ACGTcount: A:0.36, C:0.03, G:0.28, T:0.34
Consensus pattern (30 bp):
TAAAAATGGAATTTTTGGTGAAATTAGGGT
Found at i:36902329 original size:29 final size:30
Alignment explanation
Indices: 36902082--36902349 Score: 147
Period size: 29 Copynumber: 9.1 Consensus size: 30
36902072 ATTTTTGACT
* *
36902082 TTCGGGAGTAAAAATGTAATTTTTGGTGAAA-
1 TTCGGGGGTAAAAATGGAATTTTT-G-GAAAG
*
36902113 TT--AGGGTCAAAAATGGAA-TTTTGGAAAG
1 TTCGGGGGT-AAAAATGGAATTTTTGGAAAG
** *
36902141 TTTAGGGGTAAAACA-GTAATTTTTGGTGAAA-
1 TTCGGGGGTAAAA-ATGGAATTTTT-G-GAAAG
* *
36902172 -TCGGGGCTAAAAATGGGA-TTTTGGAAAG
1 TTCGGGGGTAAAAATGGAATTTTTGGAAAG
** *
36902200 TTCAAGGAT-AAAATGGTAATTTTTGGGGAAA-
1 TTCGGGGGTAAAAATGG-AATTTTT--GGAAAG
* *
36902231 TT-GGGGTTAAAAATGGAA-TTTTGGTAAG
1 TTCGGGGGTAAAAATGGAATTTTTGGAAAG
*
36902259 TTTGGGGGT-AAAATGGTAATTTTTGGTGAAA-
1 TTCGGGGGTAAAAATGG-AATTTTT-G-GAAAG
* *
36902290 -TCAGGGTTAAAAATGGAA-TTTTGGAAAG
1 TTCGGGGGTAAAAATGGAATTTTTGGAAAG
* *
36902318 TTCGGGGGT-AAAATGTAATTTTTGGACAG
1 TTCGGGGGTAAAAATGGAATTTTTGGAAAG
36902347 TTC
1 TTC
36902350 AAGGGCCTAT
Statistics
Matches: 184, Mismatches: 27, Indels: 54
0.69 0.10 0.20
Matches are distributed among these distances:
27 16 0.09
28 29 0.16
29 58 0.32
30 49 0.27
31 20 0.11
32 12 0.07
ACGTcount: A:0.34, C:0.04, G:0.29, T:0.33
Consensus pattern (30 bp):
TTCGGGGGTAAAAATGGAATTTTTGGAAAG
Found at i:36903007 original size:16 final size:14
Alignment explanation
Indices: 36902980--36903016 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
36902970 CAATGGTTTT
36902980 CCTTTTTTTTAAACC
1 CCTTTTTTTT-AACC
36902995 CCTTTTCTTTTAACC
1 CCTTTT-TTTTAACC
36903010 CCTTTTT
1 CCTTTTT
36903017 AAGCCACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 1 0.05
15 16 0.76
16 4 0.19
ACGTcount: A:0.14, C:0.30, G:0.00, T:0.57
Consensus pattern (14 bp):
CCTTTTTTTTAACC
Found at i:36904013 original size:6 final size:6
Alignment explanation
Indices: 36903998--36904041 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
36903988 TTATTTGGAC
* *
36903998 ATTT-A ATTTAA ATTTAA ATTTAA ATTTAT A-TTAA GTTTAA ATTT
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTT
36904042 TAAAAAAACT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
5 7 0.21
6 26 0.79
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (6 bp):
ATTTAA
Found at i:36904031 original size:17 final size:18
Alignment explanation
Indices: 36903998--36904041 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
36903988 TTATTTGGAC
36903998 ATTT-AATTTAAATTTAA
1 ATTTAAATTTAAATTTAA
*
36904015 ATTTAAATTTATA-TTAA
1 ATTTAAATTTAAATTTAA
*
36904032 GTTTAAATTT
1 ATTTAAATTT
36904042 TAAAAAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 17 0.71
18 7 0.29
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (18 bp):
ATTTAAATTTAAATTTAA
Found at i:36905283 original size:3 final size:3
Alignment explanation
Indices: 36905275--36905309 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
36905265 GAATTTGGTT
* *
36905275 CTG CTG CTG CTG CTG CTG ATG TTG CTG CTG CTG CT
1 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CT
36905310 TTAAAAACCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.03, C:0.29, G:0.31, T:0.37
Consensus pattern (3 bp):
CTG
Found at i:36906887 original size:3 final size:3
Alignment explanation
Indices: 36906879--36906908 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
36906869 TCGAATTACT
36906879 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
36906909 GTAGTAGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:36907580 original size:358 final size:355
Alignment explanation
Indices: 36906922--36908741 Score: 1284
Period size: 359 Copynumber: 5.0 Consensus size: 355
36906912 GTAGTATTAG
* * * * *
36906922 TAGTTAATTGACTACAAACATTGAAAATAGTAGCAAGGCTTTTCAATTACCATTGAAGTCATATA
1 TAGTTAATCGACTAAAAACATT-AAAATAATAACAAGACTTTTCAATTACCATTGAAGTCATATA
* * * * *
36906987 AGCCGTTGGCATAAAATCTGATTCATTCTTTAGAAGCTCCTCCTGAGGTCATTAGTTGCGTAAAA
65 AGTCATTGGCATAAAATCTGATTCATTCCTTAGAAGCTCCTCCTGAAGTCATTAGTTGCATAAAA
* *
36907052 GCATGGGATAATTAATTTTTTAATTTAATAGGAAAAACATAACTAAGTAAATAATATCAATAGAC
130 GCATGGGATAATTAATTTTTTAATTTAAAAAGAAAAACATAACTAAGTAAATAATATCAATAGAC
* *
36907117 AAGAAATTTATTTAGGATACACTTGAAAATCAAATTATATTACTTTACTAGAATTGAAAAAAAAA
195 AAGAAACTTATTTAGGATACACTTAAAAATCAAATTATATTACTTTACTAGAATTGAAAAAAAAA
* * *
36907182 TATCATTAAAATAATAATTTATCTAAAATCGAGCCTAAAAAATTTTAATTCAAAATAATTCTATT
260 TACCATTAAAATAATAATTTATCTAAAATCGAGACTAAAAAA-ATTAATTCAAAATAATTCTATT
*
36907247 TGAAT-AGAATTACTATTCTAATAATAATAATAA
324 TGAATCA-AATTACTATACTAATAATAATAAT-A
* * * *
36907280 TAGTTAATCAACTATAAACATATAAAATAATAACAAGACTTTTCAATTACCCTTGAATTCATATA
1 TAGTTAATCGACTAAAAACAT-TAAAATAATAACAAGACTTTTCAATTACCATTGAAGTCATATA
* * * *
36907345 AGTCATTGGCATAGAAT-TTATTTCATTCCTTCGAAGTTCCTCCTGAAGTCATTAGTTGCATAAA
65 AGTCATTGGCATAAAATCTGA-TTCATTCCTTAGAAGCTCCTCCTGAAGTCATTAGTTGCATAAA
* * * *
36907409 AGCATGGGATAATTAATTTTTTTAATTTAAAAAGAAAAATATTATTAAGTAAATAATATCAATGG
129 AGCATGGGATAATTAA-TTTTTTAATTTAAAAAGAAAAACATAACTAAGTAAATAATATCAATAG
* * * * *
36907474 ACAAGAAACTTATTTAGGATGCACTTAAAAATCAAATTGTATTATTTTATTAGAATTGAAAAAAT
193 ACAAGAAACTTATTTAGGATACACTTAAAAATCAAATTATATTACTTTACTAGAATTGAAAAAAA
* * * *
36907539 ATTACCATTTAAAT-ATAATTTATCTAAAGTGGAGACTAAAAAAATTAATTCAAAATAATTCTAT
258 AATACCATTAAAATAATAATTTATCTAAAATCGAGACTAAAAAAATTAATTCAAAATAATTCTAT
* * * *
36907603 TTGAATCAATTTACTATACTACTACTAATAGTA
323 TTGAATCAAATTACTATACTAATAATAATAATA
* * * * * *
36907636 T--TTAATGGACTAAAAACATTTAAAATAACAACAAGTCTTTTAAATTACCTTTGAAGTCATAAA
1 TAGTTAATCGACTAAAAACA-TTAAAATAATAACAAGACTTTTCAATTACCATTGAAGTCATATA
* * * * * * * * * * * * * * * *
36907699 AGTAACTCGC-TCAGA-CT-TTTCTTTTCTTGGTGAGGTAACTCGCTCAAG-CTTTAGCTGC-TT
65 AGTCATTGGCATAAAATCTGATTCATTCCTTAG-AAGCT-CCTC-CTGAAGTCATTAGTTGCATA
*** * ** ** * * ** * * * ** *
36907759 CTGGCCTAGACGTTTCCCCTGAAGTCATTAGTTGCATAAAAGAATGGGATAGTTAATTTTTTTTT
127 AAAGCAT-G--GGAT--AATTAATTTTTTAATT-TA-AAAAGAA----AAACATAA-------CT
* * * * * *
36907824 AATTTAATAAGA-AAGATATAACTAAGTAAA-TAATATTAATGGACAAGAAACTTATTTAGATAC
174 AAGTAAATAATATCA-ATA-GAC-AAG-AAACT--TATT--T-----AG-----GA------TAC
* * * * * * *
36907887 ACTTGAAAATCAAATTATAGTA-TTTAATTAGAATTGAAAAAATATTATCATTTAAAT-ATAATT
215 ACTTAAAAATCAAATTATATTACTTT-ACTAGAATTGAAAAAAAAATACCATTAAAATAATAATT
* * * * * *
36907950 TATCTAAAATCGAAAACCTAAAAGAAATTTAATTTAAGATAAATCAATTTGAATCGAATTACTAT
279 TATCTAAAATCG-AGA-CTAAAA-AAA-TTAATTCAAAATAATTCTATTTGAATCAAATTACTAT
*
36908015 TCTAATAATAAT-A-A
340 ACTAATAATAATAATA
* * * * * *
36908029 TAGTTAATCAACTATAAACACTGAAAGTAATAGCAATG-CTTTTCAATTACCATTGATGTCATAT
1 TAGTTAATCGACTAAAAACA-TTAAAATAATAACAA-GACTTTTCAATTACCATTGAAGTCATAT
* * * * *
36908093 AAGTCGTTGGCATAGAATGTGATTCATTCTTTAGAAGCTCCACCTGAAGTCATTAGTTGCATAAA
64 AAGTCATTGGCATAAAATCTGATTCATTCCTTAGAAGCTCCTCCTGAAGTCATTAGTTGCATAAA
** * * *
36908158 AATATGGGATAATTAATTTTTTAATTT---AA-AAAAATATAATTAAGTAAATAATATCAATGGA
129 AGCATGGGATAATTAATTTTTTAATTTAAAAAGAAAAACATAACTAAGTAAATAATATCAATAGA
* * **
36908219 CAAGAAACTTATTTAGGATACACTTGAAAATCAAATTATATTACTATACTAGAATTGAAAAACCG
194 CAAGAAACTTATTTAGGATACACTTAAAAATCAAATTATATTACTTTACTAGAATTGAAAAA-AA
* * * * * * * * *
36908284 ATTATCATTGAAAT-GTAATTTATCTAAAGTCGAGCCTAAAAGAATTTAATTAAAAATAATTCAA
258 AATACCATTAAAATAATAATTTATCTAAAATCGAGACTAAAA-AAATTAATTCAAAATAATTCTA
* * * *
36908348 TTTGAATCGAATTACTATTCCAATAATAAAAATAA
322 TTTGAATCAAATTACTATACTAATAATAATAAT-A
* * * * * * *
36908383 TAGTTAACCAACTATAAACATTTAAAATAACAGCAAAACTTTTCAATTA-CACTAGAAGTCATAT
1 TAGTTAATCGACTAAAAACA-TTAAAATAATAACAAGACTTTTCAATTACCA-TTGAAGTCATAT
* * * * * * *
36908447 AAGT-AGTTGACATAGAATCTGATTCATTCTTTAGAAGTTTCTCTTGAAGCCATTAGTTGCATAA
64 AAGTCA-TTGGCATAAAATCTGATTCATTCCTTAGAAGCTCCTCCTGAAGTCATTAGTTGCATAA
* * * *
36908511 AAGCATGGAATAATTATTTTTTTTAATTTAATAAGAAAAACATAACTAAGTAAATAATATCAATG
128 AAGCATGGGATAATTA-ATTTTTTAATTTAAAAAGAAAAACATAACTAAGTAAATAATATCAATA
* * * *
36908576 GACAAAAAACTTATTTAAGATACACTTGAAAATCAAATTATATTACTTTA-TTGAAATTGAAAAA
192 GACAAGAAACTTATTTAGGATACACTTAAAAATCAAATTATATTACTTTACTAG-AATTGAAAAA
* * * * *
36908640 AAAATTAACTTTTAAAT-ATAATTTATCTAAAGTCGAGCCTAAAAAAA-TAATT-AATCACGATA
256 AAAA-TACCATTAAAATAATAATTTATCTAAAATCGAGACTAAAAAAATTAATTCAA--A--ATA
* * * *
36908702 AATCAATTTGAATCAAATTATTATTCTAATAATAATAATA
316 ATTCTATTTGAATCAAATTACTATACTAATAATAATAATA
36908742 ATAATAATAA
Statistics
Matches: 1152, Mismatches: 225, Indels: 169
0.75 0.15 0.11
Matches are distributed among these distances:
351 53 0.05
352 17 0.01
353 56 0.05
354 215 0.19
355 14 0.01
356 10 0.01
357 56 0.05
358 165 0.14
359 234 0.20
360 37 0.03
362 4 0.00
364 2 0.00
368 1 0.00
369 14 0.01
370 2 0.00
371 8 0.01
372 6 0.01
373 8 0.01
374 2 0.00
375 14 0.01
376 1 0.00
380 2 0.00
382 5 0.00
385 1 0.00
386 2 0.00
387 2 0.00
390 3 0.00
391 67 0.06
392 11 0.01
393 8 0.01
394 5 0.00
395 99 0.09
396 14 0.01
397 6 0.01
398 8 0.01
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (355 bp):
TAGTTAATCGACTAAAAACATTAAAATAATAACAAGACTTTTCAATTACCATTGAAGTCATATAA
GTCATTGGCATAAAATCTGATTCATTCCTTAGAAGCTCCTCCTGAAGTCATTAGTTGCATAAAAG
CATGGGATAATTAATTTTTTAATTTAAAAAGAAAAACATAACTAAGTAAATAATATCAATAGACA
AGAAACTTATTTAGGATACACTTAAAAATCAAATTATATTACTTTACTAGAATTGAAAAAAAAAT
ACCATTAAAATAATAATTTATCTAAAATCGAGACTAAAAAAATTAATTCAAAATAATTCTATTTG
AATCAAATTACTATACTAATAATAATAATA
Found at i:36908679 original size:359 final size:359
Alignment explanation
Indices: 36907776--36908744 Score: 1286
Period size: 354 Copynumber: 2.7 Consensus size: 359
36907766 AGACGTTTCC
* *
36907776 CCTGAAGTCATTAGTTGCATAAAAGAATGGGATAGTTAATTTTTTTTTAATTTAATAAGAAAGAT
1 CCTGAAGTCATTAGTTGCATAAAAGAATGGGATAATT-A-TTTTTTTTAATTTAATAAGAAAAAT
*
36907841 ATAACTAAGTAAATAATATTAATGGACAAGAAACTTATTT-AGATACACTTGAAAATCAAATTAT
64 ATAACTAAGTAAATAATATCAATGGACAAGAAACTTATTTAAGATACACTTGAAAATCAAATTAT
* * * *
36907905 AGTA-TTTAATTAGAATTG-AAAAAATATTATCATTTAAATATAATTTATCTAAAATCGAAAACC
129 ATTACTTT-ATTAGAATTGAAAAAAAAATTATCATTTAAATATAATTTATCTAAAGTCG--AGCC
*
36907968 TAAAAGAAATTTAATTTAAGATAAATCAATTTGAATCGAATTACTATT-C--TAATAATAATAAT
191 TAAAAG-AATTTAATTAAAGATAAATCAATTTGAATCGAATTACTATTCCAATAATAATAATAAT
* * * ** * *
36908030 AGTTAATCAACTATAAACACTGAAAGTAATAGCAATGCTTTTCAATTACCATTGATGTCATATAA
255 AGTTAACCAACTATAAACACTGAAAATAACAGCAAAACTTTTCAATTACCATAGAAGTCATATAA
* * *
36908095 GTCGTTGGCATAGAATGTGATTCATTCTTTAGAAGCTCCA
320 GTAGTTGACATAGAATCTGATTCATTCTTTAGAAGCTCCA
*
36908135 CCTGAAGTCATTAGTTGCATAAAA-ATATGGGATAATTA-ATTTTTTAA-TT--TAA-AAAAATA
1 CCTGAAGTCATTAGTTGCATAAAAGA-ATGGGATAATTATTTTTTTTAATTTAATAAGAAAAATA
* *
36908194 TAATTAAGTAAATAATATCAATGGACAAGAAACTTATTTAGGATACACTTGAAAATCAAATTATA
65 TAACTAAGTAAATAATATCAATGGACAAGAAACTTATTTAAGATACACTTGAAAATCAAATTATA
* * *** * *
36908259 TTACTATACTAGAATTGAAAAACCGATTATCATTGAAATGTAATTTATCTAAAGTCGAGCCTAAA
130 TTACTTTATTAGAATTGAAAAAAAAATTATCATTTAAATATAATTTATCTAAAGTCGAGCCTAAA
* * *
36908324 AGAATTTAATTAAAAATAATTCAATTTGAATCGAATTACTATTCCAATAATAAAAATAATAGTTA
195 AGAATTTAATTAAAGATAAATCAATTTGAATCGAATTACTATTCCAATAATAATAATAATAGTTA
* *
36908389 ACCAACTATAAACATTTAAAATAACAGCAAAACTTTTCAATTA-CACTAGAAGTCATATAAGTAG
260 ACCAACTATAAACACTGAAAATAACAGCAAAACTTTTCAATTACCA-TAGAAGTCATATAAGTAG
* * *
36908453 TTGACATAGAATCTGATTCATTCTTTAGAAGTTTCT
324 TTGACATAGAATCTGATTCATTCTTTAGAAGCTCCA
* * * * *
36908489 CTTGAAGCCATTAGTTGCATAAAAGCATGGAATAATTATTTTTTTTAATTTAATAAGAAAAACAT
1 CCTGAAGTCATTAGTTGCATAAAAGAATGGGATAATTATTTTTTTTAATTTAATAAGAAAAATAT
*
36908554 AACTAAGTAAATAATATCAATGGACAAAAAACTTATTTAAGATACACTTGAAAATCAAATTATAT
66 AACTAAGTAAATAATATCAATGGACAAGAAACTTATTTAAGATACACTTGAAAATCAAATTATAT
* *
36908619 TACTTTATT-GAAATTGAAAAAAAAATTAACTTTTAAATATAATTTATCTAAAGTCGAGCCTAAA
131 TACTTTATTAG-AATTGAAAAAAAAATTATCATTTAAATATAATTTATCTAAAGTCGAGCCTAAA
* * * *
36908683 A-AA-ATAATTAATCACGATAAATCAATTTGAATCAAATTATTATTCTAATAATAATAATAATA
195 AGAATTTAATTAA--A-GATAAATCAATTTGAATCGAATTACTATTCCAATAATAATAATAATA
36908745 ATAATAATAA
Statistics
Matches: 532, Mismatches: 60, Indels: 35
0.85 0.10 0.06
Matches are distributed among these distances:
351 38 0.07
352 53 0.10
353 40 0.08
354 167 0.31
355 10 0.02
356 10 0.02
357 7 0.01
358 8 0.02
359 158 0.30
360 41 0.08
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.34
Consensus pattern (359 bp):
CCTGAAGTCATTAGTTGCATAAAAGAATGGGATAATTATTTTTTTTAATTTAATAAGAAAAATAT
AACTAAGTAAATAATATCAATGGACAAGAAACTTATTTAAGATACACTTGAAAATCAAATTATAT
TACTTTATTAGAATTGAAAAAAAAATTATCATTTAAATATAATTTATCTAAAGTCGAGCCTAAAA
GAATTTAATTAAAGATAAATCAATTTGAATCGAATTACTATTCCAATAATAATAATAATAGTTAA
CCAACTATAAACACTGAAAATAACAGCAAAACTTTTCAATTACCATAGAAGTCATATAAGTAGTT
GACATAGAATCTGATTCATTCTTTAGAAGCTCCA
Found at i:36908734 original size:3 final size:3
Alignment explanation
Indices: 36908728--36908758 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
36908718 ATTATTATTC
36908728 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
36908759 TAATCGACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:36909565 original size:3 final size:3
Alignment explanation
Indices: 36909559--36909598 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
36909549 ATTATTAGTC
36909559 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
36909599 TAATTCAAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:36910351 original size:299 final size:296
Alignment explanation
Indices: 36909616--36910741 Score: 1406
Period size: 303 Copynumber: 3.8 Consensus size: 296
36909606 AGAAAATTAA
** * * * *
36909616 TTTTTAATTTAAAAAGAAAGGCACAACTAATTAAATAATATCAATGGGA-AACAAACTTATTTAG
1 TTTTTAATTTAAAAAGAAAAACATAACTAAGTAAATAATATCAAT-GTACAAGAAACTTATTTAG
* * *
36909680 GATACAC-T--AAGTTAAATATAATTTA--T---CT---GCCTAAAAAATTTAATGCCAAATAAT
65 GATACACTTGAAAGTTAAATATAATTTATTTAAAGTAGAGCCTAAAAAA-TTAATTCAAAATAAT
* * *
36909734 TCAATTTGAATCGAAT---TACT-ATAATAATAATTAAGCTACTATAAACATTTAAAATAATAGC
129 TCAATTTGAATCTAATACATAATAATAATAATAATTAAGCTACTATAAACATTTAAAATAACAGC
*
36909795 AAGATTTTTCAATTACCCTTGAAGTCATATAAGTAGTTGGCATAGAACCTAGTTGAAGTTCCTCC
194 AAGACTTTTCAATTACCCTTGAAGTCATATAAGTAGTTGGCATAGAACCTAGTTGAAGTTCCTCC
*
36909860 TGAAGTCATTAGTTGCAAAAAAAAACATGTGATAAGTAAT
259 TGAAATCATTAGTTGC--AAAAAAACATGTGATAAGTAAT
* * *
36909900 TTTTTAATTTAAGAAGAAAAATATAACTAAGTAAATAATATCAATGTACAAGAAACTTATTTAAG
1 TTTTTAATTTAAAAAGAAAAACATAACTAAGTAAATAATATCAATGTACAAGAAACTTATTTAGG
36909965 ATACACTTGAAAGTTAAATATAATTTATTTAAAGTAGAGCCTAAAAAAATTAATTCAAAATAATT
66 ATACACTTGAAAGTTAAATATAATTTATTTAAAGTAGAGCCT-AAAAAATTAATTCAAAATAATT
*
36910030 CAATTTGAATCTAATA-ATAATAATAATAATAAATTAAGCTACTATAAACATGTAAAATAACAGC
130 CAATTTGAATCTAATACATAATAATAATAAT-AATTAAGCTACTATAAACATTTAAAATAACAGC
*
36910094 AAGACTTTTCAATTACCCTTGAAGTCATATAAGTAGTTAGCATAGAACCTAGTTGAAGTTCCTCC
194 AAGACTTTTCAATTACCCTTGAAGTCATATAAGTAGTTGGCATAGAACCTAGTTGAAGTTCCTCC
36910159 TGAAATCATTAGTTGCAAAAAAACATGTGATAAGTAAT
259 TGAAATCATTAGTTGCAAAAAAACATGTGATAAGTAAT
36910197 TTTTTAATTTAAGAAA-AAAAACATAACTAAGTAAATAATATCAATGTACAAGAAACTTATTTAG
1 TTTTTAATTTAA-AAAGAAAAACATAACTAAGTAAATAATATCAATGTACAAGAAACTTATTTAG
* *
36910261 GATACACTTGAAAGTTAAATATAATTTATTTAAAGTAGAGCCGAAAAAATTAATACAAAATAATT
65 GATACACTTGAAAGTTAAATATAATTTATTTAAAGTAGAGCCTAAAAAATTAATTCAAAATAATT
* * * *
36910326 CAGTTTGAATCTAATTACTATAATAATAATAATAA-TAA--TA--ATAATA-ATAATAATATTTA
130 CAATTTGAATCTAA-TAC-ATAATAATAATAATAATTAAGCTACTATAA-ACAT-TTAA-AATAA
* ** *
36910385 -ATC-A-ACTATAAACATTTACCCTTGAAGTCATATAAGTAGTTGGCATAGAACCTATTACTATC
190 CAGCAAGACT-T-TTCAATTACCCTTGAAGTCATATAAGTAGTTGGCATAGAA-C-----CTA--
* * *
36910447 GGTTGAAGTTCCTCCTGAAATCATTAGTTGTAAAAAAGCATGGGATAAGTAAT
245 -GTTGAAGTTCCTCCTGAAATCATTAGTTGCAAAAAAACATGTGATAAGTAAT
* *
36910500 TTTTTAATTTAAAAAGAAAAACATAACTAAATAAATAATATCAATGTACAAAAAACTTATTTAGG
1 TTTTTAATTTAAAAAGAAAAACATAACTAAGTAAATAATATCAATGTACAAGAAACTTATTTAGG
* * *
36910565 ATACATTTGAAAGTTAAATATAATTTATCTAAAGTCGAGCCTAAAAAATTAATTCAAAATAATTC
66 ATACACTTGAAAGTTAAATATAATTTATTTAAAGTAGAGCCTAAAAAATTAATTCAAAATAATTC
* * *
36910630 AATTTGAATCTAATAATAATAATAATAATAATAATAATTAATCAACTATAAACATTTAAAATAAC
131 AATTTGAATC---TAAT-A-CATAATAATAATAATAATTAAGCTACTATAAACATTTAAAATAAC
* * * * *
36910695 AGTAAAACTTTTCAATTATCATTGAAGTCATATAAATAGTTGGCATA
191 AGCAAGACTTTTCAATTACCCTTGAAGTCATATAAGTAGTTGGCATA
36910742 AAATCTGATT
Statistics
Matches: 735, Mismatches: 57, Indels: 74
0.85 0.07 0.09
Matches are distributed among these distances:
283 2 0.00
284 59 0.08
285 1 0.00
287 17 0.02
289 1 0.00
292 4 0.01
293 8 0.01
294 42 0.06
295 38 0.05
296 40 0.05
297 130 0.18
298 12 0.02
299 123 0.17
300 3 0.00
302 3 0.00
303 177 0.24
305 1 0.00
306 20 0.03
307 3 0.00
309 4 0.01
310 36 0.05
311 8 0.01
312 3 0.00
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.33
Consensus pattern (296 bp):
TTTTTAATTTAAAAAGAAAAACATAACTAAGTAAATAATATCAATGTACAAGAAACTTATTTAGG
ATACACTTGAAAGTTAAATATAATTTATTTAAAGTAGAGCCTAAAAAATTAATTCAAAATAATTC
AATTTGAATCTAATACATAATAATAATAATAATTAAGCTACTATAAACATTTAAAATAACAGCAA
GACTTTTCAATTACCCTTGAAGTCATATAAGTAGTTGGCATAGAACCTAGTTGAAGTTCCTCCTG
AAATCATTAGTTGCAAAAAAACATGTGATAAGTAAT
Found at i:36910353 original size:3 final size:3
Alignment explanation
Indices: 36910345--36910380 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
36910335 TCTAATTACT
36910345 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
36910381 TTTAATCAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:36910648 original size:3 final size:3
Alignment explanation
Indices: 36910640--36910667 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
36910630 AATTTGAATC
36910640 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
36910668 TAATCAACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:36911091 original size:14 final size:13
Alignment explanation
Indices: 36911060--36911089 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
36911050 CTTTGATTTC
36911060 AAAATTTGAAAAA
1 AAAATTTGAAAAA
36911073 AAAATTTGAAAAA
1 AAAATTTGAAAAA
36911086 AAAA
1 AAAA
36911090 ATCCTAGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (13 bp):
AAAATTTGAAAAA
Found at i:36911512 original size:27 final size:29
Alignment explanation
Indices: 36911482--36911541 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
36911472 GATTTGTATA
* *
36911482 ATTTTCGTATTTAA-TT-TTTTTTAGATT
1 ATTTTCGTAATTAATTTATTTTTTAAATT
36911509 ATTTTCGTAATTAATTTATTTTTTAAATT
1 ATTTTCGTAATTAATTTATTTTTTAAATT
36911538 ATTT
1 ATTT
36911542 AAAAGAACTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 13 0.45
28 2 0.07
29 14 0.48
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (29 bp):
ATTTTCGTAATTAATTTATTTTTTAAATT
Found at i:36913482 original size:16 final size:19
Alignment explanation
Indices: 36913445--36913485 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 19
36913435 ATGATGATTC
36913445 TAAAAAGTATAAAATAATT
1 TAAAAAGTATAAAATAATT
36913464 TAAAAA-TAT-AAAT-ATT
1 TAAAAAGTATAAAATAATT
36913480 TAAAAA
1 TAAAAA
36913486 AAATTAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 9 0.41
17 4 0.18
18 3 0.14
19 6 0.27
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (19 bp):
TAAAAAGTATAAAATAATT
Found at i:36913835 original size:19 final size:19
Alignment explanation
Indices: 36913811--36913867 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
36913801 AAAATAAATC
36913811 TTAATTTATTACTTTTTTA
1 TTAATTTATTACTTTTTTA
* *
36913830 TTAATTAATGAACTTTTTTA
1 TTAATTTAT-TACTTTTTTA
*
36913850 TTGAATTT-TTAATTTTTT
1 TT-AATTTATTACTTTTTT
36913868 GATGATTTCC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
19 15 0.48
20 12 0.39
21 4 0.13
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.65
Consensus pattern (19 bp):
TTAATTTATTACTTTTTTA
Found at i:36914335 original size:41 final size:41
Alignment explanation
Indices: 36914290--36914369 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
36914280 GGTCAAAAGA
* * *
36914290 ATAAAATTGATAAAAATG-AGTGATTGCGTGTAAACATAAAT
1 ATAAAATTAAT-AAAATGAAGCGATTGCGGGTAAACATAAAT
*
36914331 ATAAATTTAATAAAATGAAGCGATTGCGGGTAAACATAA
1 ATAAAATTAATAAAATGAAGCGATTGCGGGTAAACATAA
36914370 CTATTTTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 6 0.18
41 28 0.82
ACGTcount: A:0.49, C:0.06, G:0.17, T:0.28
Consensus pattern (41 bp):
ATAAAATTAATAAAATGAAGCGATTGCGGGTAAACATAAAT
Found at i:36916296 original size:3 final size:3
Alignment explanation
Indices: 36916288--36916325 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
36916278 AAAAAGGTTA
36916288 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
36916326 AGAACAAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36917674 original size:15 final size:15
Alignment explanation
Indices: 36917633--36917677 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
36917623 GGCTTGTGAA
* *
36917633 TGGTTTTTGGGTGTT
1 TGGTATTTGGGTATT
36917648 TGGTATTT-GGTATT
1 TGGTATTTGGGTATT
36917662 TGGTATTTGGGTATT
1 TGGTATTTGGGTATT
36917677 T
1 T
36917678 TGTGTAAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 13 0.48
15 14 0.52
ACGTcount: A:0.09, C:0.00, G:0.33, T:0.58
Consensus pattern (15 bp):
TGGTATTTGGGTATT
Found at i:36917676 original size:8 final size:7
Alignment explanation
Indices: 36917646--36917677 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
36917636 TTTTTGGGTG
36917646 TTTGGTA
1 TTTGGTA
36917653 TTTGGTA
1 TTTGGTA
36917660 TTTGGTA
1 TTTGGTA
36917667 TTTGGGTA
1 TTT-GGTA
36917675 TTT
1 TTT
36917678 TGTGTAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.59
Consensus pattern (7 bp):
TTTGGTA
Found at i:36920944 original size:6 final size:6
Alignment explanation
Indices: 36920933--36920961 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
36920923 AGCTGATAGT
36920933 TGAGGC TGAGGC TGAGGC TGAGGC TGAGG
1 TGAGGC TGAGGC TGAGGC TGAGGC TGAGG
36920962 TTGATGAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.14, G:0.52, T:0.17
Consensus pattern (6 bp):
TGAGGC
Found at i:36921749 original size:59 final size:57
Alignment explanation
Indices: 36921626--36921750 Score: 139
Period size: 58 Copynumber: 2.1 Consensus size: 57
36921616 TGGCTGGCAC
* **
36921626 CCAATGGACGACACCAAAAAACTCAAATTAAAAAATATATTTTTTTGAGTTTTTTCAA
1 CCAAT-GACGACACCAAAAAACTCAAATTAAAAAAAATATTTTTTTGAGTTTTGACAA
*
36921684 CTAATGATCGACACCCAAAAAA-TACAAA-TAAAAAAAATATTTTTTTG-GATGTTTGACAA
1 CCAATGA-CGACA-CCAAAAAACT-CAAATTAAAAAAAATATTTTTTTGAG-T-TTTGACAA
36921743 CCAATGAC
1 CCAATGAC
36921751 CGGCACCACC
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
57 3 0.05
58 30 0.53
59 24 0.42
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.30
Consensus pattern (57 bp):
CCAATGACGACACCAAAAAACTCAAATTAAAAAAAATATTTTTTTGAGTTTTGACAA
Found at i:36922101 original size:74 final size:74
Alignment explanation
Indices: 36921980--36922128 Score: 298
Period size: 74 Copynumber: 2.0 Consensus size: 74
36921970 AATATTCTTC
36921980 AAAGGTGCATCCTCATCAAAGCTTGATTCAGATATTGTCTTTGATTCATCGGATGATTCATTAAA
1 AAAGGTGCATCCTCATCAAAGCTTGATTCAGATATTGTCTTTGATTCATCGGATGATTCATTAAA
36922045 ACTTTCTAA
66 ACTTTCTAA
36922054 AAAGGTGCATCCTCATCAAAGCTTGATTCAGATATTGTCTTTGATTCATCGGATGATTCATTAAA
1 AAAGGTGCATCCTCATCAAAGCTTGATTCAGATATTGTCTTTGATTCATCGGATGATTCATTAAA
36922119 ACTTTCTAA
66 ACTTTCTAA
36922128 A
1 A
36922129 TAATTTTTCA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (74 bp):
AAAGGTGCATCCTCATCAAAGCTTGATTCAGATATTGTCTTTGATTCATCGGATGATTCATTAAA
ACTTTCTAA
Found at i:36927925 original size:96 final size:97
Alignment explanation
Indices: 36927756--36928067 Score: 326
Period size: 96 Copynumber: 3.2 Consensus size: 97
36927746 GCCATTGCGA
* ** * *
36927756 CTTAAATCTTTCCCTTCATGCTTTCGAGGTACAAGGTTCACCATTGCGATTTAAACCTTTCCCTT
1 CTTAAATCTTTCCCTTCAT-CTTTTGAGGTACAAGGTTCGTCGTTGCGACTTAAACCTTTCCCTT
*** * *
36927821 TGCGTCTTTATGGCACTGGATTCGCTGTTGCAG
65 TATATCTTTGTGGTACTGGATTCGCTGTTGCAG
* * * *
36927854 CTTAAATCTTACCCTTCAT-TTTTTAGGTACAAGGTTCGTCGTTGCGGCTTAAACCTTTCCTTTT
1 CTTAAATCTTTCCCTTCATCTTTTGAGGTACAAGGTTCGTCGTTGCGACTTAAACCTTTCCCTTT
* * *
36927918 ATATCTTTGCGGTACTGAATTTATCG-TTTTG--G
66 ATATCTTTGTGGTACTGGA--T-TCGCTGTTGCAG
* * * *
36927950 CTTAAATCTTTCCCTTCATGCCTCTGAGGTACGAGGTTCGTCGTTGCGACTTAAACCTTTCCCTC
1 CTTAAATCTTTCCCTTCAT-CTTTTGAGGTACAAGGTTCGTCGTTGCGACTTAAACCTTTCCCTT
* * *
36928015 TATTATATTCGTGGTATTGGATTCGCTGTTGCAG
65 TA-TATCTTTGTGGTACTGGATTCGCTGTTGCAG
36928049 CTTAAATCTTTCCCTTCAT
1 CTTAAATCTTTCCCTTCAT
36928068 GTCTTCAAGG
Statistics
Matches: 174, Mismatches: 31, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
96 71 0.41
97 5 0.03
98 62 0.36
99 36 0.21
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.41
Consensus pattern (97 bp):
CTTAAATCTTTCCCTTCATCTTTTGAGGTACAAGGTTCGTCGTTGCGACTTAAACCTTTCCCTTT
ATATCTTTGTGGTACTGGATTCGCTGTTGCAG
Found at i:36932806 original size:8 final size:9
Alignment explanation
Indices: 36932793--36932829 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
36932783 ATATGTATAT
36932793 GAAATAAAA
1 GAAATAAAA
36932802 G-AAT-AAA
1 GAAATAAAA
*
36932809 GAAACAAAA
1 GAAATAAAA
36932818 GAAATAAAA
1 GAAATAAAA
36932827 GAA
1 GAA
36932830 GGAAGAACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
7 4 0.17
8 5 0.21
9 15 0.62
ACGTcount: A:0.76, C:0.03, G:0.14, T:0.08
Consensus pattern (9 bp):
GAAATAAAA
Found at i:36932817 original size:16 final size:17
Alignment explanation
Indices: 36932793--36932825 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
36932783 ATATGTATAT
*
36932793 GAAATAAAAG-AATAAA
1 GAAACAAAAGAAATAAA
36932809 GAAACAAAAGAAATAAA
1 GAAACAAAAGAAATAAA
36932826 AGAAGGAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.76, C:0.03, G:0.12, T:0.09
Consensus pattern (17 bp):
GAAACAAAAGAAATAAA
Found at i:36933676 original size:41 final size:40
Alignment explanation
Indices: 36933628--36933728 Score: 100
Period size: 38 Copynumber: 2.6 Consensus size: 40
36933618 TCGACCTCGA
** *
36933628 GTCGATGAGACACTGGGTGTCATTATTTTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
* ** *
36933668 ATTCGATGAGGTACT-GG-GT-ACCACTTTACTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
*
36933706 GCCGATGAGACACTGGGTGTCAC
1 GTCGATGAGACACTGGGTGTCAC
36933729 TTTATTGCTT
Statistics
Matches: 46, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
37 10 0.22
38 17 0.37
39 4 0.09
40 4 0.09
41 11 0.24
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (40 bp):
GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
Found at i:36935619 original size:35 final size:34
Alignment explanation
Indices: 36935580--36935689 Score: 125
Period size: 35 Copynumber: 3.2 Consensus size: 34
36935570 CCAAACTCAT
**
36935580 TTTAAATTTATTTTAAGA-TTAAATTTGTTTTAAAA
1 TTTAAATTTATTTTAA-ATTTAAATTTAATTT-AAA
* *
36935615 TTTAAATTTATTTTAAATTTAAATTTAATTTGAG
1 TTTAAATTTATTTTAAATTTAAATTTAATTTAAA
*
36935649 TTTAAATTTATTTTAAAATTTAAAATT-ATTATAAA
1 TTTAAATTTATTTT-AAATTTAAATTTAATT-TAAA
36935684 TTTAAA
1 TTTAAA
36935690 ATAAACAAAG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
34 19 0.29
35 46 0.71
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (34 bp):
TTTAAATTTATTTTAAATTTAAATTTAATTTAAA
Found at i:36935623 original size:6 final size:6
Alignment explanation
Indices: 36935612--36935689 Score: 58
Period size: 6 Copynumber: 13.5 Consensus size: 6
36935602 ATTTGTTTTA
* * *
36935612 AAATTT AAATTT -ATTTT AAATTT AAATTT -AATTT GAGTTT AAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
* *
36935658 -ATTTT AAAATTT AAAATT --ATTAT AAATTT AAA
1 AAATTT -AAATTT AAATTT AAATT-T AAATTT AAA
36935690 ATAAACAAAG
Statistics
Matches: 56, Mismatches: 9, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
4 2 0.04
5 14 0.25
6 33 0.59
7 7 0.12
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (6 bp):
AAATTT
Found at i:36935642 original size:23 final size:23
Alignment explanation
Indices: 36935612--36935658 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
36935602 ATTTGTTTTA
*
36935612 AAATTTAAATTT-ATTTTAAATTT
1 AAATTT-AATTTGAGTTTAAATTT
36935635 AAATTTAATTTGAGTTTAAATTT
1 AAATTTAATTTGAGTTTAAATTT
36935658 A
1 A
36935659 TTTTAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
AAATTTAATTTGAGTTTAAATTT
Found at i:36935654 original size:52 final size:52
Alignment explanation
Indices: 36935580--36935689 Score: 166
Period size: 52 Copynumber: 2.1 Consensus size: 52
36935570 CCAAACTCAT
* * * *
36935580 TTTAAATTTATTTTAAGATTAAATTTGTTTTAAAATTTAAATTTATTTTAAA
1 TTTAAATTTAATTTAAGATTAAATTTATTTTAAAATTTAAAATTATTATAAA
* *
36935632 TTTAAATTTAATTTGAGTTTAAATTTATTTTAAAATTTAAAATTATTATAAA
1 TTTAAATTTAATTTAAGATTAAATTTATTTTAAAATTTAAAATTATTATAAA
36935684 TTTAAA
1 TTTAAA
36935690 ATAAACAAAG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (52 bp):
TTTAAATTTAATTTAAGATTAAATTTATTTTAAAATTTAAAATTATTATAAA
Found at i:36935667 original size:12 final size:11
Alignment explanation
Indices: 36935615--36935670 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
36935605 TGTTTTAAAA
36935615 TTTAAATTTAT
1 TTTAAATTTAT
*
36935626 TTTAAATTTAAA
1 TTTAAATTT-AT
*
36935638 TTT-AATTTGAG
1 TTTAAATTT-AT
36935649 TTTAAATTTAT
1 TTTAAATTTAT
36935660 TTTAAAATTTA
1 TTT-AAATTTA
36935671 AAATTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
11 22 0.58
12 16 0.42
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (11 bp):
TTTAAATTTAT
Found at i:36935691 original size:17 final size:17
Alignment explanation
Indices: 36935580--36935689 Score: 132
Period size: 17 Copynumber: 6.4 Consensus size: 17
36935570 CCAAACTCAT
36935580 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTTTAA-A
*
36935598 -TTAAATTTGTTTTAAAA
1 TTTAAATTTATTTT-AAA
36935615 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* * *
36935632 TTTAAATTTAATTTGAG
1 TTTAAATTTATTTTAAA
36935649 TTTAAATTTATTTTAAAA
1 TTTAAATTTATTTT-AAA
* *
36935667 TTTAAAATTATTATAAA
1 TTTAAATTTATTTTAAA
36935684 TTTAAA
1 TTTAAA
36935690 ATAAACAAAG
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
17 52 0.66
18 27 0.34
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:36944222 original size:92 final size:92
Alignment explanation
Indices: 36944062--36944751 Score: 1159
Period size: 92 Copynumber: 7.5 Consensus size: 92
36944052 TCAGATCAAA
* * *
36944062 ATAGCAAGTCTTTATCTCTCTGTAGTTGTAGTAAGAGTAAGATGAAGCTTCAAACATCAATTCCT
1 ATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTT
36944127 ATCCTCTTGAAGTTGCAGTAAAGTTGG
66 ATCCTCTTGAAGTTGCAGTAAAGTTGG
*
36944154 ATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATAAAGCTTCAAACATCAATTCTT
1 ATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTT
36944219 ATCCTCTTGAAGTTGCAGTAAAGTTGG
66 ATCCTCTTGAAGTTGCAGTAAAGTTGG
* *
36944246 ATAATG-AA-TCTTTATCTCTCTGAAGTTGTAGTACGAGCAAGATGAAGCTTCAAACATAAATTC
1 AT-A-GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTC
36944309 TTATCCTCTTGAAGTTGCAGTAAAGTTGG
64 TTATCCTCTTGAAGTTGCAGTAAAGTTGG
* * * * *
36944338 ATAACAAGTCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATGAAGCTTTAAACATCAATTCCT
1 ATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTT
*
36944403 ATCCTCTTAAAGTTGCAGTAAAGTTGG
66 ATCCTCTTGAAGTTGCAGTAAAGTTGG
* *
36944430 ATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATAAATTCTA
1 ATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTT
36944495 ATCCTCTTGAAGTTGCAGTAAAGTTGG
66 ATCCTCTTGAAGTTGCAGTAAAGTTGG
* *
36944522 ATACCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGTAAGATGAAGCTTCAAACATCAATTCTT
1 ATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTT
36944587 ATCCTCTTGAAGTTGCAGTAAAGTTGG
66 ATCCTCTTGAAGTTGCAGTAAAGTTGG
* *
36944614 ATAGCAAGTTTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCGATTCTT
1 ATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTT
*
36944679 ATCCCCTTGAAGTTGCAGTAAAGTTGG
66 ATCCTCTTGAAGTTGCAGTAAAGTTGG
* *
36944706 ATAACAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAAATGAA
1 ATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAA
36944752 ACCTCGACAT
Statistics
Matches: 559, Mismatches: 35, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
91 3 0.01
92 552 0.99
93 3 0.01
94 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (92 bp):
ATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTT
ATCCTCTTGAAGTTGCAGTAAAGTTGG
Found at i:36945030 original size:17 final size:16
Alignment explanation
Indices: 36945008--36945072 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 16
36944998 TAAACTCATT
36945008 TTAAATTTATTTTAAGA
1 TTAAATTTATTTT-AGA
*
36945025 TTAAATTTGTTTTAGAA
1 TTAAATTTATTTTAG-A
* *
36945042 TTTAAATTTAATTTGAGT
1 -TTAAATTT-ATTTTAGA
36945060 TTAAATTTATTTT
1 TTAAATTTATTTT
36945073 TAAATTTAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
16 6 0.15
17 21 0.52
18 8 0.20
19 5 0.12
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (16 bp):
TTAAATTTATTTTAGA
Found at i:36945046 original size:35 final size:35
Alignment explanation
Indices: 36945007--36945088 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 35
36944997 CTAAACTCAT
36945007 TTTAAATTTATTTTAAGATTAAATTT-GTTTTAGAA
1 TTTAAATTTATTTTAAGATTAAATTTAGTTTTA-AA
* * * *
36945042 TTTAAATTTAATTTGAGTTTAAATTTATTTTTAAA
1 TTTAAATTTATTTTAAGATTAAATTTAGTTTTAAA
*
36945077 TTTAAAATTATT
1 TTTAAATTTATT
36945089 ATAAATTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
35 35 0.88
36 5 0.12
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (35 bp):
TTTAAATTTATTTTAAGATTAAATTTAGTTTTAAA
Found at i:36945066 original size:23 final size:24
Alignment explanation
Indices: 36945018--36945068 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
36945008 TTAAATTTAT
*
36945018 TTTAAGATTAAATTTGTTTTAGAA
1 TTTAAGATTAAATTTGGTTTAGAA
*
36945042 TTTAA-ATTTAATTTGAGTTTA-AA
1 TTTAAGATTAAATTTG-GTTTAGAA
36945065 TTTA
1 TTTA
36945069 TTTTTAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (24 bp):
TTTAAGATTAAATTTGGTTTAGAA
Found at i:36945095 original size:17 final size:18
Alignment explanation
Indices: 36945059--36945101 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
36945049 TTAATTTGAG
* *
36945059 TTTAAATTTATTTTTAAA
1 TTTAAAATTATTTATAAA
36945077 TTTAAAATTA-TTATAAA
1 TTTAAAATTATTTATAAA
36945094 TTTAAAAT
1 TTTAAAAT
36945102 AAACAAAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTAAAATTATTTATAAA
Found at i:36945098 original size:35 final size:34
Alignment explanation
Indices: 36945007--36945099 Score: 91
Period size: 35 Copynumber: 2.6 Consensus size: 34
36944997 CTAAACTCAT
36945007 TTTAAATTTATTTTAAGA-TTAAATTTGTTTTAGAA
1 TTTAAATTTA-TTTAA-ATTTAAATTTGTTTTAGAA
* * *
36945042 TTTAAATTTAATTTGAGTTTAAATTTATTTTTA-AA
1 TTTAAATTT-ATTTAAATTTAAATTT-GTTTTAGAA
*
36945077 TTTAAAATTATTATAAATTTAAA
1 TTTAAATTTATT-TAAATTTAAA
36945100 ATAAACAAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
34 3 0.06
35 39 0.81
36 6 0.12
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (34 bp):
TTTAAATTTATTTAAATTTAAATTTGTTTTAGAA
Found at i:36945780 original size:32 final size:32
Alignment explanation
Indices: 36945744--36945807 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
36945734 AATAACTTAT
*
36945744 TTAATAATA-ACAGTAATAATATT-CAATAATAA
1 TTAATAATATA-A-TAATAATATTGAAATAATAA
36945776 TTAATAATATAATAATAATATTGAAATAATAA
1 TTAATAATATAATAATAATATTGAAATAATAA
36945808 AAGAAATTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 10 0.34
32 18 0.62
33 1 0.03
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (32 bp):
TTAATAATATAATAATAATATTGAAATAATAA
Found at i:36945807 original size:3 final size:3
Alignment explanation
Indices: 36945745--36945795 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
36945735 ATAACTTATT
* * *
36945745 TAA TAA TAA CAG TAA TAA TAT TCAA TAA TAA TTAA TAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA -TAA TAA TAA TAA TAA
36945791 TAA TA
1 TAA TA
36945796 TTGAAATAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 2 0.05
3 32 0.82
4 5 0.13
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:36946977 original size:30 final size:29
Alignment explanation
Indices: 36946941--36947243 Score: 129
Period size: 29 Copynumber: 10.3 Consensus size: 29
36946931 CTAAACTGTC
*
36946941 CAAAAATTATATTTTGACCTCAAAACTTT
1 CAAAAATTATATTTTAACCTCAAAACTTT
* *
36946970 TACAAAATTATATTTTTAATCTCAAAACTTT
1 CA-AAAATTATA-TTTTAACCTCAAAACTTT
* *
36947001 CAAAAATTATATTTTAACCCCCAAACTTCT
1 CAAAAATTATATTTTAACCTCAAAACTT-T
** * * * * *
36947031 TTAAAA-TACATTTTTGACCCCAAAAGTTC
1 CAAAAATTATA-TTTTAACCTCAAAACTTT
* * **
36947060 CAAAAATTATATTTTTACCCCTGAA-TTT
1 CAAAAATTATATTTTAACCTCAAAACTTT
* *
36947088 CCAAAAACTT-CATTTTAACCTTAAAAC-TT
1 -CAAAAA-TTATATTTTAACCTCAAAACTTT
* * * *
36947117 CCAAAATTACATTTTTACCCTC-AAACATCT
1 CAAAAATTATA-TTTTAACCTCAAAAC-TTT
* * * * **
36947147 CCAAAATTACATTTTTACCTTAAAACTCC
1 CAAAAATTATATTTTAACCTCAAAACTTT
* * *
36947176 CAGAAATTACATTTTTATCCTC-AAA-TTT
1 CAAAAATTATA-TTTTAACCTCAAAACTTT
* *
36947204 CCAAAAATTCCAT-TTTTAAACC-CCAAACTTC
1 -CAAAAATT--ATATTTT-AACCTCAAAACTTT
36947235 CAAAAATTA
1 CAAAAATTA
36947244 AAATTTTACC
Statistics
Matches: 208, Mismatches: 46, Indels: 41
0.71 0.16 0.14
Matches are distributed among these distances:
27 2 0.01
28 15 0.07
29 92 0.44
30 79 0.38
31 20 0.10
ACGTcount: A:0.40, C:0.22, G:0.02, T:0.36
Consensus pattern (29 bp):
CAAAAATTATATTTTAACCTCAAAACTTT
Found at i:36947026 original size:29 final size:29
Alignment explanation
Indices: 36946941--36947243 Score: 136
Period size: 30 Copynumber: 10.3 Consensus size: 29
36946931 CTAAACTGTC
* * *
36946941 CAAAAATTATATTTTGACCTCAAAACTTT
1 CAAAAATTACATTTTAACCCCAAAACTTT
* * * *
36946970 TACAAAATTATATTTTTAATCTCAAAACTTT
1 CA-AAAATTACA-TTTTAACCCCAAAACTTT
* *
36947001 CAAAAATTATATTTTAACCCCCAAACTTCT
1 CAAAAATTACATTTTAACCCCAAAACTT-T
** * * *
36947031 TTAAAA-TACATTTTTGACCCCAAAAGTTC
1 CAAAAATTACA-TTTTAACCCCAAAACTTT
* * **
36947060 CAAAAATTATATTTTTACCCCTGAA-TTT
1 CAAAAATTACATTTTAACCCCAAAACTTT
**
36947088 CCAAAAACTT-CATTTTAACCTTAAAAC-TT
1 -CAAAAA-TTACATTTTAACCCCAAAACTTT
* * *
36947117 CCAAAATTACATTTTTACCCTC-AAACATCT
1 CAAAAATTACATTTTAACCC-CAAAAC-TTT
* * ** **
36947147 CCAAAATTACATTTTTACCTTAAAACTCC
1 CAAAAATTACATTTTAACCCCAAAACTTT
* * *
36947176 CAGAAATTACATTTTTATCCTC-AAA-TTT
1 CAAAAATTACA-TTTTAACCCCAAAACTTT
* *
36947204 CCAAAAATTCCATTTTTAAACCCC-AAACTTC
1 -CAAAAATTACA-TTTT-AACCCCAAAACTTT
36947235 CAAAAATTA
1 CAAAAATTA
36947244 AAATTTTACC
Statistics
Matches: 209, Mismatches: 48, Indels: 33
0.72 0.17 0.11
Matches are distributed among these distances:
27 2 0.01
28 21 0.10
29 79 0.38
30 88 0.42
31 19 0.09
ACGTcount: A:0.40, C:0.22, G:0.02, T:0.36
Consensus pattern (29 bp):
CAAAAATTACATTTTAACCCCAAAACTTT
Found at i:36947102 original size:59 final size:59
Alignment explanation
Indices: 36946933--36947281 Score: 230
Period size: 59 Copynumber: 5.9 Consensus size: 59
36946923 TGAAGGTCCT
* * * * * * * *
36946933 AAACTGTCCAAAAATTATATTTTGACCTCAAAACTTT-TACAAAATTATATTTTTAATCTCA
1 AAACT-TCCAAAAATTACATTTTTACCCCTAAA-TTTCCA-AAAATTACATTTTTAACCCCA
* * * * * ** *
36946994 AAACTTTCAAAAATTATATTTTAACCCCCAAACTTCTTTAAAA-TACATTTTTGACCCCA
1 AAACTTCCAAAAATTACATTTTTACCCCTAAATTTC-CAAAAATTACATTTTTAACCCCA
* * * **
36947053 AAAGTTCCAAAAATTATATTTTTACCCCTGAATTTCCAAAAACTT-CA-TTTTAACCTTA
1 AAACTTCCAAAAATTACATTTTTACCCCTAAATTTCCAAAAA-TTACATTTTTAACCCCA
* * **
36947111 AAACTTCC-AAAATTACATTTTTACCCTCAAACATCTCC-AAAATTACATTTTT-ACCTTA
1 AAACTTCCAAAAATTACATTTTTACCC-CTAA-ATTTCCAAAAATTACATTTTTAACCCCA
* * * *
36947169 AAACTCCCAGAAATTACATTTTTA-TCCTCAAATTTCCAAAAATTCCATTTTTAAACCCC-
1 AAACTTCCAAAAATTACATTTTTACCCCT-AAATTTCCAAAAATTACATTTTT-AACCCCA
* * ** * * *
36947228 AAACTTCCAAAAATTAAAATTTTACCCCCGAATGTCCAAAAATTCCGTTTTTAA
1 AAACTTCCAAAAATTACATTTTTACCCCTAAATTTCCAAAAATTACATTTTTAA
36947282 TCTTGATTTT
Statistics
Matches: 231, Mismatches: 43, Indels: 31
0.76 0.14 0.10
Matches are distributed among these distances:
57 25 0.11
58 58 0.25
59 109 0.47
60 33 0.14
61 6 0.03
ACGTcount: A:0.39, C:0.23, G:0.03, T:0.36
Consensus pattern (59 bp):
AAACTTCCAAAAATTACATTTTTACCCCTAAATTTCCAAAAATTACATTTTTAACCCCA
Found at i:36947279 original size:29 final size:29
Alignment explanation
Indices: 36946994--36947281 Score: 130
Period size: 29 Copynumber: 9.9 Consensus size: 29
36946984 TTTAATCTCA
*
36946994 AAACTTTCAAAAATT--ATATTTTAACCCCC
1 AAACTTCCAAAAATTCCAT-TTTTAA-CCCC
** * *
36947023 AAACTTCTTTAAAA-TACATTTTTGACCCC
1 AAACTTC-CAAAAATTCCATTTTTAACCCC
* **
36947052 AAAAGTTCCAAAAATTATATTTTT-ACCCC
1 -AAACTTCCAAAAATTCCATTTTTAACCCC
* * **
36947081 TGAATTTCCAAAAACTT-CA-TTTTAACCTTA
1 -AAACTTCCAAAAA-TTCCATTTTTAACC-CC
*
36947111 AAACTTCC-AAAATTACATTTTT-ACCCTC
1 AAACTTCCAAAAATTCCATTTTTAACCC-C
* **
36947139 AAACATCTCC-AAAATTACATTTTT-ACCTTA
1 AAAC-T-TCCAAAAATTCCATTTTTAACC-CC
* * * * *
36947169 AAACTCCCAGAAATTACATTTTTATCCTC
1 AAACTTCCAAAAATTCCATTTTTAACCCC
*
36947198 AAATTTCCAAAAATTCCATTTTTAAACCCC
1 AAACTTCCAAAAATTCCATTTTT-AACCCC
** * *
36947228 AAACTTCCAAAAATTAAAATTTTACCCCC
1 AAACTTCCAAAAATTCCATTTTTAACCCC
* *
36947257 GAA-TGTCCAAAAATTCCGTTTTTAA
1 AAACT-TCCAAAAATTCCATTTTTAA
36947282 TCTTGATTTT
Statistics
Matches: 200, Mismatches: 41, Indels: 36
0.72 0.15 0.13
Matches are distributed among these distances:
27 2 0.01
28 20 0.10
29 102 0.51
30 74 0.37
31 2 0.01
ACGTcount: A:0.39, C:0.24, G:0.02, T:0.35
Consensus pattern (29 bp):
AAACTTCCAAAAATTCCATTTTTAACCCC
Found at i:36947337 original size:118 final size:119
Alignment explanation
Indices: 36947215--36947434 Score: 255
Period size: 118 Copynumber: 1.9 Consensus size: 119
36947205 CAAAAATTCC
* * *
36947215 ATTTTTAAACC-CCAAACTTCCAAAAATTAAAATTTTACCCCCGAATGTCCAAAAATTCCGTTTT
1 ATTTTT-AACCTCCAAACTTCCAAAAATTAAAATTTTACCCCCAAATGTCCAAAAACTCCATTTT
* **
36947279 TAATCTTGATTTTCAT-AAAAATTACGGTTTTACCCCCAAATGTTCAAAAACGGA
65 TAATCCTGATTTTCATCAAAAATTACCATTTTACCCCCAAATGTTCAAAAACGGA
* * ** ** * *
36947333 ATTTTTGACCTCGAAACTTTTAAAAATTACCATTTTACCCTCAAATGTGCAAAAACTCCATTTTT
1 ATTTTTAACCTCCAAACTTCCAAAAATTAAAATTTTACCCCCAAATGTCCAAAAACTCCATTTTT
** **
36947398 GTTCCTGATTTTTTTCAAAAATTACCATTTTACCCCC
66 AATCCTGATTTTCATCAAAAATTACCATTTTACCCCC
36947435 GAACATCCAA
Statistics
Matches: 82, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
117 3 0.04
118 60 0.73
119 19 0.23
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (119 bp):
ATTTTTAACCTCCAAACTTCCAAAAATTAAAATTTTACCCCCAAATGTCCAAAAACTCCATTTTT
AATCCTGATTTTCATCAAAAATTACCATTTTACCCCCAAATGTTCAAAAACGGA
Found at i:36947396 original size:59 final size:59
Alignment explanation
Indices: 36947294--36947434 Score: 158
Period size: 59 Copynumber: 2.4 Consensus size: 59
36947284 TTGATTTTCA
** * *
36947294 TAAAAATTACGGTTTTACCCCCAAATGTTCAAAAACGGAATTTTTG-ACCTCGAAACTTT
1 TAAAAATTACCATTTTACCCCCAAATGTGCAAAAACGCAATTTTTGTACCT-GAAACTTT
* * * * ***
36947353 TAAAAATTACCATTTTACCCTCAAATGTGCAAAAACTCCATTTTTGTTCCTGATTTTTT
1 TAAAAATTACCATTTTACCCCCAAATGTGCAAAAACGCAATTTTTGTACCTGAAACTTT
36947412 TCAAAAATTACCATTTTACCCCC
1 T-AAAAATTACCATTTTACCCCC
36947435 GAACATCCAA
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
59 45 0.66
60 23 0.34
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (59 bp):
TAAAAATTACCATTTTACCCCCAAATGTGCAAAAACGCAATTTTTGTACCTGAAACTTT
Found at i:36957931 original size:13 final size:13
Alignment explanation
Indices: 36957913--36957946 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
36957903 TTAATTTTTA
36957913 ATATTTATATATT
1 ATATTTATATATT
*
36957926 ATATTTATTTATT
1 ATATTTATATATT
36957939 -TATTTATA
1 ATATTTATA
36957947 ATTTAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
ATATTTATATATT
Found at i:36958068 original size:19 final size:20
Alignment explanation
Indices: 36958014--36958070 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
36958004 GGAAATCATC
36958014 AAAAAATTAA-AAATTCAATA
1 AAAAAATTAATAAATT-AATA
* *
36958034 AAAAAATTCATTAATTAAT-
1 AAAAAATTAATAAATTAATA
*
36958053 AAAAAAGTAATAAATTAA
1 AAAAAATTAATAAATTAA
36958071 GATTTATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 15 0.48
20 12 0.39
21 4 0.13
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.28
Consensus pattern (20 bp):
AAAAAATTAATAAATTAATA
Found at i:36958415 original size:17 final size:18
Alignment explanation
Indices: 36958395--36958436 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
36958385 CTTGTTAATT
36958395 TTTTTTAAGTA-TTTATA
1 TTTTTTAAGTATTTTATA
* *
36958412 TTTTTAAATTATTTTATA
1 TTTTTTAAGTATTTTATA
*
36958430 CTTTTTA
1 TTTTTTA
36958437 GAATCATCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTTTAAGTATTTTATA
Found at i:36958549 original size:20 final size:19
Alignment explanation
Indices: 36958494--36958551 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
36958484 GGAAATCATC
*
36958494 AAAAAATTAA-AAATTCAAT
1 AAAAAAGTAATAAATT-AAT
* *
36958513 AAAAAAGTTCATTAATTAAT
1 AAAAAAG-TAATAAATTAAT
36958533 AAAAAAAGTAATAAATTAA
1 -AAAAAAGTAATAAATTAA
36958552 GATTTATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 6 0.19
20 14 0.45
21 11 0.35
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (19 bp):
AAAAAAGTAATAAATTAAT
Found at i:36971041 original size:49 final size:49
Alignment explanation
Indices: 36970955--36971274 Score: 254
Period size: 49 Copynumber: 6.5 Consensus size: 49
36970945 TCATTACCAT
* * * * *
36970955 AAGGGATAGATTTAAACCGCAACGACAAATC-CAGTACCACGAGGATACA
1 AAGGGAAAGGTTTAAGCCGCAACGACAAATCTC-GTACCTCGAAGATACA
* *
36971004 AAGGGAAAGGTTTAAGCCGCAATGACGAATCTCGTACCTC-AA-A-AGCA
1 AAGGGAAAGGTTTAAGCCGCAACGACAAATCTCGTACCTCGAAGATA-CA
* * * * * * **
36971051 TGAAGGAAAAGGTTTAAGTCGCCATGACGAACCTCACACCTCAGAAGATACA
1 --AAGGGAAAGGTTTAAGCCGCAACGACAAATCTCGTACCTC-GAAGATACA
* * *
36971103 AAGGGAAAGATTTAAGCCGCAACGACAAAT-TCAGTACCGCGAAGATACG
1 AAGGGAAAGGTTTAAGCCGCAACGACAAATCTC-GTACCTCGAAGATACA
* * * * * *
36971152 GAGGAAAAGGTTTAAGTCGCAACGACGAACCTCGCACCTCAGAAGATACA
1 AAGGGAAAGGTTTAAGCCGCAACGACAAATCTCGTACCTC-GAAGATACA
* * * * * * *
36971202 AAGGGAATGATTTAAGCCGCAATGGCAAATCTAGTACCACAAAGATACA
1 AAGGGAAAGGTTTAAGCCGCAACGACAAATCTCGTACCTCGAAGATACA
*
36971251 AAGGGAAAAGTTTAAGCCGCAACG
1 AAGGGAAAGGTTTAAGCCGCAACG
36971275 GCGAACTTGG
Statistics
Matches: 210, Mismatches: 50, Indels: 22
0.74 0.18 0.08
Matches are distributed among these distances:
46 1 0.00
47 3 0.01
48 1 0.00
49 133 0.63
50 66 0.31
51 2 0.01
52 3 0.01
53 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (49 bp):
AAGGGAAAGGTTTAAGCCGCAACGACAAATCTCGTACCTCGAAGATACA
Found at i:36971169 original size:99 final size:99
Alignment explanation
Indices: 36970998--36971280 Score: 351
Period size: 99 Copynumber: 2.9 Consensus size: 99
36970988 GTACCACGAG
* * *
36970998 GATACAAAGGGAAAGGTTTAAGCCGCAATGACGAATCTC-GTACCTCAAAAGCAT--GAAGGAAA
1 GATACAAAGGGAAAGATTTAAGCCGCAATGACAAAT-TCAGTACCAC-AAAG-ATACGAAGGAAA
* *
36971060 AGGTTTAAGTCGCCATGACGAACCTCACACCTCAGAA
63 AGGTTTAAGTCGCAACGACGAACCTCACACCTCAGAA
* * * *
36971097 GATACAAAGGGAAAGATTTAAGCCGCAACGACAAATTCAGTACCGCGAAGATACGGAGGAAAAGG
1 GATACAAAGGGAAAGATTTAAGCCGCAATGACAAATTCAGTACCACAAAGATACGAAGGAAAAGG
*
36971162 TTTAAGTCGCAACGACGAACCTCGCACCTCAGAA
66 TTTAAGTCGCAACGACGAACCTCACACCTCAGAA
* * *
36971196 GATACAAAGGGAATGATTTAAGCCGCAATGGCAAA-TCTAGTACCACAAAGATACAAAGGGAAAA
1 GATACAAAGGGAAAGATTTAAGCCGCAATGACAAATTC-AGTACCACAAAGATACGAA-GGAAAA
* *
36971260 -GTTTAAGCCGCAACGGCGAAC
64 GGTTTAAGTCGCAACGACGAAC
36971281 TTGGTACCTC
Statistics
Matches: 161, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
97 2 0.01
98 7 0.04
99 146 0.91
100 6 0.04
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (99 bp):
GATACAAAGGGAAAGATTTAAGCCGCAATGACAAATTCAGTACCACAAAGATACGAAGGAAAAGG
TTTAAGTCGCAACGACGAACCTCACACCTCAGAA
Found at i:36971247 original size:148 final size:148
Alignment explanation
Indices: 36970955--36971274 Score: 360
Period size: 148 Copynumber: 2.2 Consensus size: 148
36970945 TCATTACCAT
* * * *
36970955 AAGGGATAGATTTAAACCGCAACGACAAATCCAGTACCACGAGGATACAAAGGGAAAGGTTTAAG
1 AAGGGAAAGATTTAAGCCGCAACGACAAATCCAGTACCACGAAGATACAAAGGAAAAGGTTTAAG
* * * * * * * *
36971020 CCGCAATGACGAATCTCGTACCTCAAAAGCATGAAGGAAAAGGTTTAAGTCGCCATGACGAACCT
66 CCGCAACGACGAACCTCGCACCTCAAAAGCATAAAGGAAAAGATTTAAGCCGCAATGACAAACCT
*
36971085 CACACCTCAGAAGATACA
131 CACACCACAGAAGATACA
* * **
36971103 AAGGGAAAGATTTAAGCCGCAACGACAAATTCAGTACCGCGAAGATACGGAGGAAAAGGTTTAAG
1 AAGGGAAAGATTTAAGCCGCAACGACAAATCCAGTACCACGAAGATACAAAGGAAAAGGTTTAAG
* * * * * *
36971168 TCGCAACGACGAACCTCGCACCTCAGAAG-ATACAAAGGGAATGATTTAAGCCGCAATGGCAAAT
66 CCGCAACGACGAACCTCGCACCTCAAAAGCAT--AAAGGAAAAGATTTAAGCCGCAATGACAAAC
*
36971232 CT-AGTACCACA-AAGATACA
129 CTCA-CACCACAGAAGATACA
36971251 AAGGGAAA-AGTTTAAGCCGCAACG
1 AAGGGAAAGA-TTTAAGCCGCAACG
36971275 GCGAACTTGG
Statistics
Matches: 144, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
147 3 0.02
148 112 0.78
149 29 0.20
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (148 bp):
AAGGGAAAGATTTAAGCCGCAACGACAAATCCAGTACCACGAAGATACAAAGGAAAAGGTTTAAG
CCGCAACGACGAACCTCGCACCTCAAAAGCATAAAGGAAAAGATTTAAGCCGCAATGACAAACCT
CACACCACAGAAGATACA
Found at i:36971288 original size:49 final size:48
Alignment explanation
Indices: 36970955--36971312 Score: 206
Period size: 49 Copynumber: 7.3 Consensus size: 48
36970945 TCATTACCAT
* * * * * *
36970955 AAGGGATAGATTTAAACCGCAACGACAAATCCAGTACCACGAGGATACA
1 AAGGGAAAGATTTAAGCCGCAACGACAAAT-TAGTACCTCAAAGATACA
* * * * *
36971004 AAGGGAAAGGTTTAAGCCGCAATGACGAATCTCGTACCTCAAAAGCAT--G
1 AAGGGAAAGATTTAAGCCGCAACGACAAAT-TAGTACCTC-AAAG-ATACA
* * * * * * * *
36971053 AAGGAAAAGGTTTAAGTCGCCATGACGAACCTCA-CACCTCAGAAGATACA
1 AAGGGAAAGATTTAAGCCGCAACGAC-AA-ATTAGTACCTCA-AAGATACA
* * *
36971103 AAGGGAAAGATTTAAGCCGCAACGACAAATTCAGTACCGCGAAGATACG
1 AAGGGAAAGATTTAAGCCGCAACGACAAATT-AGTACCTCAAAGATACA
* * * * ** * *
36971152 GAGGAAAAGGTTTAAGTCGCAACGACGAACCTCGCACCTCAGAAGATACA
1 AAGGGAAAGATTTAAGCCGCAACGAC-AAATTAGTACCTCA-AAGATACA
* * * *
36971202 AAGGGAATGATTTAAGCCGCAATGGCAAATCTAGTACCACAAAGATACA
1 AAGGGAAAGATTTAAGCCGCAACGACAAAT-TAGTACCTCAAAGATACA
* * * * *
36971251 AAGGGAAA-AGTTTAAGCCGCAACGGCGAACTTGGTACCTCAAAAAT-GA
1 AAGGGAAAGA-TTTAAGCCGCAACGAC-AAATTAGTACCTCAAAGATACA
36971299 AA-GGAAAGATTTAA
1 AAGGGAAAGATTTAA
36971313 TTCACAATGG
Statistics
Matches: 233, Mismatches: 61, Indels: 32
0.71 0.19 0.10
Matches are distributed among these distances:
47 10 0.04
48 9 0.04
49 144 0.62
50 67 0.29
51 3 0.01
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.16
Consensus pattern (48 bp):
AAGGGAAAGATTTAAGCCGCAACGACAAATTAGTACCTCAAAGATACA
Found at i:36971290 original size:99 final size:99
Alignment explanation
Indices: 36970998--36971433 Score: 329
Period size: 99 Copynumber: 4.4 Consensus size: 99
36970988 GTACCACGAG
* * * * * *
36970998 GATACAAAGGGAAAGGTTTAAGCCGCAATGACGAATCTCGTACCTC-AA-A-AGCATGAA-GGAA
1 GATACAAAGGGAAAGATTTAAGCCGCAACGGCAAATCTAGTACCACGAAGATA-CA--AAGGGAA
* * * *
36971059 AAGGTTTAAGTCGCCATGACGAACCTCA-CACCTCAGAA
63 AA-GTTTAAGTCGCAACGGCGAACCT-AGTACCTCAGAA
* * **
36971097 GATACAAAGGGAAAGATTTAAGCCGCAACGACAAAT-TCAGTACCGCGAAGATACGGA-GGAAAA
1 GATACAAAGGGAAAGATTTAAGCCGCAACGGCAAATCT-AGTACCACGAAGATACAAAGGGAAAA
* * *
36971160 GGTTTAAGTCGCAACGACGAACCTCGCACCTCAGAA
65 -GTTTAAGTCGCAACGGCGAACCTAGTACCTCAGAA
* * *
36971196 GATACAAAGGGAATGATTTAAGCCGCAATGGCAAATCTAGTACCACAAAGATACAAAGGGAAAAG
1 GATACAAAGGGAAAGATTTAAGCCGCAACGGCAAATCTAGTACCACGAAGATACAAAGGGAAAAG
* * *
36971261 TTTAAGCCGCAACGGCGAACTTGGTACCTCA-AA
66 TTTAAGTCGCAACGGCGAACCTAGTACCTCAGAA
* * ** * * ** * * ** *
36971294 AAT-GAAA-GGAAAGATTTAATTCACAATGGTGAATCCAGTACCACGACGACGCAAAGGGAAAGG
1 GATACAAAGGGAAAGATTTAAGCCGCAACGGCAAATCTAGTACCACGAAGATACAAAGGGAAAAG
* *
36971357 TTTAAGTCGCGACGGTGAACCTAGTACCTC-GAA
66 TTTAAGTCGCAACGGCGAACCTAGTACCTCAGAA
* * * * *
36971390 -AGCACGAAGGAAAAGATTTAAGCCGTAACGGTAAATCTAGTACC
1 GA-TACAAAGGGAAAGATTTAAGCCGCAACGGCAAATCTAGTACC
36971434 GTAAAGACAT
Statistics
Matches: 274, Mismatches: 52, Indels: 23
0.79 0.15 0.07
Matches are distributed among these distances:
95 1 0.00
96 71 0.26
97 5 0.02
98 32 0.12
99 153 0.56
100 9 0.03
101 2 0.01
102 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.17
Consensus pattern (99 bp):
GATACAAAGGGAAAGATTTAAGCCGCAACGGCAAATCTAGTACCACGAAGATACAAAGGGAAAAG
TTTAAGTCGCAACGGCGAACCTAGTACCTCAGAA
Found at i:36971890 original size:18 final size:18
Alignment explanation
Indices: 36971837--36971965 Score: 106
Period size: 17 Copynumber: 7.4 Consensus size: 18
36971827 CTAAACCCAT
*
36971837 TTTAGATTTA-TTTTAAGA
1 TTTAAATTTATTTTTAA-A
*
36971855 -TTAAATTTA-TTTTCAA
1 TTTAAATTTATTTTTAAA
*
36971871 TTTCAATTTATTTTTAAA
1 TTTAAATTTATTTTTAAA
* *
36971889 TTTAAATTTGTTTTAAAA
1 TTTAAATTTATTTTTAAA
* * *
36971907 TTTCAATTTA-ATTTAAG
1 TTTAAATTTATTTTTAAA
*
36971924 TTTAAATTTATATTTAAA
1 TTTAAATTTATTTTTAAA
* * *
36971942 TCTAAAATTA-TTCTAAA
1 TTTAAATTTATTTTTAAA
36971959 TTTAAAT
1 TTTAAAT
36971966 AATGAAAACC
Statistics
Matches: 88, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
16 1 0.01
17 44 0.50
18 43 0.49
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTAAATTTATTTTTAAA
Found at i:36971892 original size:6 final size:6
Alignment explanation
Indices: 36971855--36971965 Score: 61
Period size: 6 Copynumber: 19.0 Consensus size: 6
36971845 TATTTTAAGA
* * * ** **
36971855 TTAAAT TT-ATT TTCAAT TTCAAT TTATTT TTAAAT TTAAAT TT-GTT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* * * * *
36971901 TTAAAAT TTCAAT TT-AAT TTAAGT TTAAAT TTATAT TTAAAT CTAAAA
1 TT-AAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
36971949 TT--AT TCTAAAT TTAAAT
1 TTAAAT T-TAAAT TTAAAT
36971966 AATGAAAACC
Statistics
Matches: 78, Mismatches: 20, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
4 2 0.03
5 13 0.17
6 57 0.73
7 6 0.08
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.54
Consensus pattern (6 bp):
TTAAAT
Found at i:36971894 original size:35 final size:34
Alignment explanation
Indices: 36971842--36971965 Score: 133
Period size: 35 Copynumber: 3.6 Consensus size: 34
36971832 CCCATTTTAG
*
36971842 ATTTATTTTAAGA-TTAAATTTATTTTCAATTTCA
1 ATTTATTTTAA-ATTTAAATTTATTTTAAATTTCA
*
36971876 ATTTATTTTTAAATTTAAATTTGTTTTAAAATTTCA
1 ATTTA-TTTTAAATTTAAATTTATTTT-AAATTTCA
* * * *
36971912 ATTTAATTTAAGTTTAAATTTATATTTAAATCTAA
1 ATTTATTTTAAATTTAAATTTAT-TTTAAATTTCA
* *
36971947 AATTATTCTAAATTTAAAT
1 ATTTATTTTAAATTTAAAT
36971966 AATGAAAACC
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
34 6 0.08
35 54 0.72
36 15 0.20
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (34 bp):
ATTTATTTTAAATTTAAATTTATTTTAAATTTCA
Found at i:36975493 original size:21 final size:21
Alignment explanation
Indices: 36975469--36975509 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36975459 CGTTTTATTA
36975469 TATTAATATTA-TAATAATAAC
1 TATT-ATATTATTAATAATAAC
*
36975490 TATTTTATTATTAATAATAA
1 TATTATATTATTAATAATAA
36975510 ATGTAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TATTATATTATTAATAATAAC
Found at i:36975517 original size:27 final size:26
Alignment explanation
Indices: 36975475--36975557 Score: 65
Period size: 27 Copynumber: 3.4 Consensus size: 26
36975465 ATTATATTAA
36975475 TATT-ATAAT-AA-TAACTATTTTAT
1 TATTAATAATAAATTAACTATTTTAT
*
36975498 TATTAATAATAAATGTAACT-TTAATAT
1 TATTAATAATAAAT-TAACTATT-TTAT
* *
36975525 TAGTAATGAT-AATTAA-TATTTT-T
1 TATTAATAATAAATTAACTATTTTAT
36975548 TATTAA-AATA
1 TATTAATAATA
36975558 TTAATAATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
22 2 0.04
23 10 0.21
24 7 0.15
25 7 0.15
26 5 0.11
27 16 0.34
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (26 bp):
TATTAATAATAAATTAACTATTTTAT
Found at i:36977730 original size:14 final size:14
Alignment explanation
Indices: 36977711--36977772 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
36977701 ATGGCTTAAT
36977711 AATATTAAAAATTA
1 AATATTAAAAATTA
36977725 AATATT--AAATT-
1 AATATTAAAAATTA
*
36977736 TATATTAAAAATTA
1 AATATTAAAAATTA
* *
36977750 AAGCA-TAAAGATTA
1 AA-TATTAAAAATTA
36977764 AATATTAAA
1 AATATTAAA
36977773 TTTAGATACA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
11 5 0.13
12 5 0.13
13 6 0.16
14 21 0.55
15 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (14 bp):
AATATTAAAAATTA
Found at i:36977734 original size:7 final size:7
Alignment explanation
Indices: 36977711--36977773 Score: 53
Period size: 7 Copynumber: 9.4 Consensus size: 7
36977701 ATGGCTTAAT
36977711 AATATTA
1 AATATTA
*
36977718 AAAATTA
1 AATATTA
36977725 AATATTA
1 AATATTA
36977732 AAT-TT-
1 AATATTA
36977737 -ATATTA
1 AATATTA
*
36977743 AAAATTA
1 AATATTA
*
36977750 AAGCA-TA
1 AA-TATTA
*
36977757 AAGATTA
1 AATATTA
36977764 AATATTA
1 AATATTA
36977771 AAT
1 AAT
36977774 TTAGATACAA
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
4 2 0.04
5 2 0.04
6 3 0.07
7 37 0.82
8 1 0.02
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.37
Consensus pattern (7 bp):
AATATTA
Found at i:36980900 original size:103 final size:107
Alignment explanation
Indices: 36980698--36980916 Score: 286
Period size: 111 Copynumber: 2.0 Consensus size: 107
36980688 CCGTGTTGGC
* *
36980698 TTTTGTGAAGTAATTTTTAGTATTATTGTGCTGGTGTGTTTTCAATAAAATACAAATGCCTATTG
1 TTTTGTGAAGTAATTCTTAGTATTATAGTGCTGGTGTGTTTTCAATAAAATACAAATGCCTATT-
* *
36980763 CCGACGCATTTGTATGTAATGAATGTAGTGATTGAAGTTTTCA-TGT
65 ----CGCATTTGTATGGAATGAAAGTAGTGATTGAAGTTTTCATTGT
*
36980809 TTTTGTGAATTAATTCTTAGTATTATAGTGCTGGTGTGTTTTCAATAAAATA-AGAATG-CTA-T
1 TTTTGTGAAGTAATTCTTAGTATTATAGTGCTGGTGTGTTTTCAATAAAATACA-AATGCCTATT
* *
36980871 -GTATTTGTATGGAATGAAAGTAGTTATTGAAGTTTTCATTGT
65 CGCATTTGTATGGAATGAAAGTAGTGATTGAAGTTTTCATTGT
36980913 TTTT
1 TTTT
36980917 CTTTTAGTTT
Statistics
Matches: 99, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
103 34 0.34
104 7 0.07
109 1 0.01
110 4 0.04
111 53 0.54
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (107 bp):
TTTTGTGAAGTAATTCTTAGTATTATAGTGCTGGTGTGTTTTCAATAAAATACAAATGCCTATTC
GCATTTGTATGGAATGAAAGTAGTGATTGAAGTTTTCATTGT
Found at i:36983693 original size:31 final size:30
Alignment explanation
Indices: 36983627--36983695 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
36983617 TAATGAGAGG
* * *
36983627 TTTTAAAATTTTTAGAAATTTACTTGAAAT
1 TTTTAAAACTTTCAGAAATTTAATTGAAAT
*
36983657 ATTTAAAACTTTCAGAAAATTTAATT-AGAAT
1 TTTTAAAACTTTCAG-AAATTTAATTGA-AAT
36983688 TTTTAAAA
1 TTTTAAAA
36983696 ATGTTGAGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
30 13 0.41
31 19 0.59
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (30 bp):
TTTTAAAACTTTCAGAAATTTAATTGAAAT
Found at i:36985573 original size:28 final size:27
Alignment explanation
Indices: 36985529--36985581 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
36985519 AAGATGACTA
*
36985529 TATACAAATTTTCAATAAATAAAAAATT
1 TATACAAATTTTAAAT-AATAAAAAATT
*
36985557 TATA-AAATTATTAAATATTAAAAAA
1 TATACAAATT-TTAAATAATAAAAAA
36985582 AATATAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (27 bp):
TATACAAATTTTAAATAATAAAAAATT
Done.