Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 128 of 143
Found at i:37541397 original size:27 final size:27
Alignment explanation
Indices: 37541331--37541398 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 27
37541321 TGTTATTTAC
37541331 GTATAATTTTTTAATGTATTTTCAATTT
1 GTATAATTTTTTAATGTATTTTCAA-TT
*
37541359 GT-TAAGTTTTTAATGTATTTTC-A-T
1 GTATAATTTTTTAATGTATTTTCAATT
37541383 GTATAATATTGTTTAA
1 GTATAAT-TT-TTTAA
37541399 ATATTTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
24 3 0.09
25 3 0.09
26 3 0.09
27 24 0.69
28 2 0.06
ACGTcount: A:0.29, C:0.03, G:0.10, T:0.57
Consensus pattern (27 bp):
GTATAATTTTTTAATGTATTTTCAATT
Found at i:37541633 original size:32 final size:32
Alignment explanation
Indices: 37541595--37541873 Score: 375
Period size: 32 Copynumber: 8.7 Consensus size: 32
37541585 TAACCTCAGT
*
37541595 GGAATGGACAAAATGAACATATT-GACTTTAGC
1 GGAATGGACAAAATGAACATATTAG-CATTAGC
** * ** * *
37541627 AAAATGGTCAAAACCAACATATT-GACCTTCGC
1 GGAATGGACAAAATGAACATATTAG-CATTAGC
37541659 GGAATGGACAAAATGAACATATTAGCATTAGC
1 GGAATGGACAAAATGAACATATTAGCATTAGC
*
37541691 GGAATGAACAAAATGAACATATTAGCATTAGC
1 GGAATGGACAAAATGAACATATTAGCATTAGC
37541723 GGAATGGACAAAATGAACATATTAGCATTAGC
1 GGAATGGACAAAATGAACATATTAGCATTAGC
*
37541755 GGAATGAACAAAATGAACATATTAGCATTAGC
1 GGAATGGACAAAATGAACATATTAGCATTAGC
* *
37541787 GGAATGGACAAAATGAACATATT-GACCTTCGC
1 GGAATGGACAAAATGAACATATTAG-CATTAGC
*
37541819 AGAATGGACAAAATGAACATATTAGCATTAGC
1 GGAATGGACAAAATGAACATATTAGCATTAGC
* *
37541851 GGAATGAACAAAATCAACATATT
1 GGAATGGACAAAATGAACATATT
37541874 GGCCTCAACT
Statistics
Matches: 218, Mismatches: 26, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
31 1 0.00
32 215 0.99
33 2 0.01
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (32 bp):
GGAATGGACAAAATGAACATATTAGCATTAGC
Found at i:37543734 original size:28 final size:29
Alignment explanation
Indices: 37543683--37543742 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 29
37543673 AATTTTGGGA
*
37543683 AAATTTGAGGGTAAAAATGAAA-TTTTAG
1 AAATTTGAGGGTAAAAACGAAATTTTTAG
37543711 AAATTTGAGGGT-AAAACGATAATTTTTAG
1 AAATTTGAGGGTAAAAACGA-AATTTTTAG
37543740 AAA
1 AAA
37543743 AATAAAGATC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 6 0.21
28 14 0.48
29 9 0.31
ACGTcount: A:0.47, C:0.02, G:0.20, T:0.32
Consensus pattern (29 bp):
AAATTTGAGGGTAAAAACGAAATTTTTAG
Found at i:37543793 original size:29 final size:28
Alignment explanation
Indices: 37543761--37544086 Score: 128
Period size: 29 Copynumber: 11.2 Consensus size: 28
37543751 TCAAAAACAA
37543761 AATTTTTGGACATTCAGGGGT-AAAATGGT
1 AATTTTTGGA-ATTCAGGGGTCAAAAT-GT
* * * *
37543790 AATTTTTAGAAAAATCA-GGATCAAAAATGA
1 AATTTTT-G-GAATTCAGGGGTC-AAAATGT
* *
37543820 AATTCTTGGATATTCGGGGGT-AAAATGGT
1 AATTTTTGGA-ATTCAGGGGTCAAAAT-GT
** * *
37543849 AATTTTTGGAATTTTGGAGTCAAAAATAT
1 AATTTTTGGAATTCAGGGGTC-AAAATGT
* * *
37543878 AATTTTTAGACATCCGGGGGT-AAAATGGT
1 AATTTTTGGA-ATTCAGGGGTCAAAAT-GT
* * * * ***
37543907 AATTTTTAGAAAAATC-GAGATCAAAAACAA
1 AATTTTT-G-GAATTCAGGGGTC-AAAATGT
*
37543937 AATTTTTGGATATACAGGGGT-AAAATGGT
1 AATTTTTGGA-ATTCAGGGGTCAAAAT-GT
* * * *
37543966 AATTTTTGGAATTTTAAGGGTAAAAATTT
1 AATTTTTGGAA-TTCAGGGGTCAAAATGT
* **
37543995 AATTTTTTGAAATTTTGGGGTCAAAATAG-
1 AA-TTTTTGGAATTCAGGGGTCAAAAT-GT
* *
37544024 AATTTTTGGAAGTTTAGGGGTAAAAATGT
1 AATTTTTGGAA-TTCAGGGGTCAAAATGT
* *
37544053 ATTTTTTGGAAGTTTA-GGGTCAAAATGT
1 AATTTTTGGAA-TTCAGGGGTCAAAATGT
37544081 AATTTT
1 AATTTT
37544087 CTAAAAGTTT
Statistics
Matches: 220, Mismatches: 53, Indels: 49
0.68 0.16 0.15
Matches are distributed among these distances:
28 49 0.22
29 109 0.50
30 51 0.23
31 11 0.05
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.36
Consensus pattern (28 bp):
AATTTTTGGAATTCAGGGGTCAAAATGT
Found at i:37543794 original size:59 final size:59
Alignment explanation
Indices: 37543719--37543972 Score: 294
Period size: 59 Copynumber: 4.3 Consensus size: 59
37543709 AGAAATTTGA
* * *
37543719 GGGTAAAACGATAATTTTTAGAAAAATAAAGATCAAAAACAAAATTTTTGGACATTCAG
1 GGGTAAAATGGTAATTTTTAGAAAAATCAAGATCAAAAACAAAATTTTTGGACATTCAG
* ** * * *
37543778 GGGTAAAATGGTAATTTTTAGAAAAATCAGGATCAAAAATGAAATTCTTGGATATTCGG
1 GGGTAAAATGGTAATTTTTAGAAAAATCAAGATCAAAAACAAAATTTTTGGACATTCAG
* *** ** * * * * *
37543837 GGGTAAAATGGTAATTTTTGGAATTTTGGAG-TCAAAAATATAATTTTTAGACATCCGG
1 GGGTAAAATGGTAATTTTTAGAAAAATCAAGATCAAAAACAAAATTTTTGGACATTCAG
* * *
37543895 GGGTAAAATGGTAATTTTTAGAAAAATCGAGATCAAAAACAAAATTTTTGGATATACAG
1 GGGTAAAATGGTAATTTTTAGAAAAATCAAGATCAAAAACAAAATTTTTGGACATTCAG
37543954 GGGTAAAATGGTAATTTTT
1 GGGTAAAATGGTAATTTTT
37543973 GGAATTTTAA
Statistics
Matches: 161, Mismatches: 33, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
58 47 0.29
59 114 0.71
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.31
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTAGAAAAATCAAGATCAAAAACAAAATTTTTGGACATTCAG
Found at i:37543802 original size:117 final size:117
Alignment explanation
Indices: 37543660--37543933 Score: 293
Period size: 117 Copynumber: 2.3 Consensus size: 117
37543650 TGAACTCTTG
* ** * * * *
37543660 GGGGCAAAATGGTAATTTTGGGAAAATTTGAGGGT-AAAAATGAAATT-TTAGAAATTTGAGGGT
1 GGGGTAAAATGGTAATTTTTAGAAAA-ATCAGGATCAAAAATGAAATTCTTAGAAATTCGAGGGT
* *
37543723 AAAACGATAATTTTTAGAAAAATAAAGATCAAAAACAAAATTTTTGGACATTCA
65 AAAACGATAATTTTTAGAAAAATAAAG-TCAAAAACAAAATTTTTAGACATCCA
* * *
37543777 GGGGTAAAATGGTAATTTTTAGAAAAATCAGGATCAAAAATGAAATTCTTGGATATTCGGGGGTA
1 GGGGTAAAATGGTAATTTTTAGAAAAATCAGGATCAAAAATGAAATTCTTAGAAATTCGAGGGTA
* * * *** ** * * *
37543842 AAATGGTAATTTTTGGAATTTTGGAGTCAAAAATATAATTTTTAGACATCCG
66 AAACGATAATTTTTAGAAAAATAAAGTCAAAAACAAAATTTTTAGACATCCA
37543894 GGGGTAAAATGGTAATTTTTAGAAAAATC-GAGATCAAAAA
1 GGGGTAAAATGGTAATTTTTAGAAAAATCAG-GATCAAAAA
37543934 CAAAATTTTT
Statistics
Matches: 131, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
116 6 0.05
117 94 0.72
118 31 0.24
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.30
Consensus pattern (117 bp):
GGGGTAAAATGGTAATTTTTAGAAAAATCAGGATCAAAAATGAAATTCTTAGAAATTCGAGGGTA
AAACGATAATTTTTAGAAAAATAAAGTCAAAAACAAAATTTTTAGACATCCA
Found at i:37543940 original size:117 final size:117
Alignment explanation
Indices: 37543751--37544001 Score: 355
Period size: 117 Copynumber: 2.1 Consensus size: 117
37543741 AAAATAAAGA
* * * *
37543751 TCAAAAACAAAATTTTTGGACATTCAGGGGTAAAATGGTAATTTTTAGAAAAATCAGGATCAAAA
1 TCAAAAATATAATTTTTAGACATCCAGGGGTAAAATGGTAATTTTTAGAAAAATCAGGATCAAAA
** * *
37543816 ATGAAATTCTTGGATATTCGGGGGTAAAATGGTAATTTTTGGAATTTT-GGAG
66 ACAAAATTCTTGGATATACAGGGGTAAAATGGTAATTTTTGGAATTTTAGG-G
*
37543868 TCAAAAATATAATTTTTAGACATCCGGGGGTAAAATGGTAATTTTTAGAAAAATC-GAGATCAAA
1 TCAAAAATATAATTTTTAGACATCCAGGGGTAAAATGGTAATTTTTAGAAAAATCAG-GATCAAA
*
37543932 AACAAAATTTTTGGATATACAGGGGTAAAATGGTAATTTTTGGAATTTTAAGGG
65 AACAAAATTCTTGGATATACAGGGGTAAAATGGTAATTTTTGGAATTTT-AGGG
*
37543986 T-AAAAATTTAATTTTT
1 TCAAAAATATAATTTTT
37544002 TGAAATTTTG
Statistics
Matches: 120, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
116 1 0.01
117 115 0.96
118 2 0.02
119 2 0.02
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (117 bp):
TCAAAAATATAATTTTTAGACATCCAGGGGTAAAATGGTAATTTTTAGAAAAATCAGGATCAAAA
ACAAAATTCTTGGATATACAGGGGTAAAATGGTAATTTTTGGAATTTTAGGG
Found at i:37544062 original size:87 final size:85
Alignment explanation
Indices: 37543952--37544218 Score: 275
Period size: 87 Copynumber: 3.0 Consensus size: 85
37543942 TTGGATATAC
* * * *
37543952 AGGGGTAAAATGGTAATTTTTGGAATTTTAAGGGTAAAAATTTAATTTTTTGAAATTTTGGGGTC
1 AGGGGTAAAAT-GTAATTTTTGGAAGTTT-AGGGTCAAAATGTAATTTTCTGAAATTTTGGGGTC
*
37544017 AAAATAGAATTTTTGGAAGTTT
64 AAAATATAATTTTTGGAAGTTT
* * *
37544039 AGGGGTAAAAATGTATTTTTTGGAAGTTTAGGGTCAAAATGTAATTTTCTAAAAGTTTTAGGGTC
1 AGGGGT-AAAATGTAATTTTTGGAAGTTTAGGGTCAAAATGTAATTTTCTGAAA-TTTTGGGGTC
***
37544104 AAAAATATAATTTTCAAAAGTTTT
64 -AAAATATAATTTTTGGAAG-TTT
* * * * * ** *
37544128 A-GGGTAAAACGTAATTTTTGTAAGATTCGAGGTCAAAATGAAATTTTGGAGAAATTTAGGGGTC
1 AGGGGTAAAATGTAATTTTTGGAAGTTTAG-GGTCAAAATGTAATTTT-CTGAAATTTTGGGGTC
37544192 AAAATATAATTTTTGGATAGTTT
64 AAAATATAATTTTTGGA-AGTTT
37544215 AGGG
1 AGGG
37544219 ACCTTTAGAG
Statistics
Matches: 147, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
86 21 0.14
87 67 0.46
88 52 0.35
89 7 0.05
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.38
Consensus pattern (85 bp):
AGGGGTAAAATGTAATTTTTGGAAGTTTAGGGTCAAAATGTAATTTTCTGAAATTTTGGGGTCAA
AATATAATTTTTGGAAGTTT
Found at i:37544094 original size:29 final size:28
Alignment explanation
Indices: 37543954--37544218 Score: 185
Period size: 30 Copynumber: 9.1 Consensus size: 28
37543944 GGATATACAG
* *
37543954 GGGT-AAAATGGTAATTTTTGGAATTTTAA
1 GGGTCAAAAT-GTAATTTTTGAAAGTTT-A
* * * *
37543983 GGGTAAAAATTTAATTTTTTGAAATTTTG
1 GGGTCAAAATGTAA-TTTTTGAAAGTTTA
*
37544012 GGGTCAAAATAG-AATTTTTGGAAGTTTA
1 GGGTCAAAAT-GTAATTTTTGAAAGTTTA
* * *
37544040 GGGGTAAAAATGTATTTTTTGGAAGTTTA
1 -GGGTCAAAATGTAATTTTTGAAAGTTTA
*
37544069 GGGTCAAAATGTAATTTTCTAAAAGTTTTA
1 GGGTCAAAATGTAATTTT-TGAAAG-TTTA
* **
37544099 GGGTCAAAAATATAATTTTCAAAAGTTTTA
1 GGGTC-AAAATGTAATTTTTGAAAG-TTTA
* * * *
37544129 GGGT-AAAACGTAATTTTTGTAAGATTC
1 GGGTCAAAATGTAATTTTTGAAAGTTTA
* * *
37544156 GAGGTCAAAATGAAATTTTGGAGAAATTTA
1 G-GGTCAAAATGTAATTTTTGA-AAGTTTA
* *
37544186 GGGGTCAAAATATAATTTTTGGATAGTTTA
1 -GGGTCAAAATGTAATTTTT-GAAAGTTTA
37544216 GGG
1 GGG
37544219 ACCTTTAGAG
Statistics
Matches: 188, Mismatches: 35, Indels: 26
0.76 0.14 0.10
Matches are distributed among these distances:
27 3 0.02
28 45 0.24
29 61 0.32
30 64 0.34
31 15 0.08
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.38
Consensus pattern (28 bp):
GGGTCAAAATGTAATTTTTGAAAGTTTA
Found at i:37544216 original size:30 final size:29
Alignment explanation
Indices: 37543952--37544218 Score: 186
Period size: 29 Copynumber: 9.1 Consensus size: 29
37543942 TTGGATATAC
* *
37543952 AGGGGT-AAAATGGTAATTTTTGGAATTTT
1 AGGGGTCAAAAT-ATAATTTTTGGAAGTTT
* * * * *
37543981 AAGGGTAAAAATTTAATTTTTTGAAATTT
1 AGGGGTCAAAATATAATTTTTGGAAGTTT
* *
37544010 TGGGGTCAAAATAGAATTTTTGGAAGTTT
1 AGGGGTCAAAATATAATTTTTGGAAGTTT
* * *
37544039 AGGGGTAAAAATGTATTTTTTGGAAGTTT
1 AGGGGTCAAAATATAATTTTTGGAAGTTT
* **
37544068 A-GGGTCAAAATGTAATTTTCTAAAAGTTTT
1 AGGGGTCAAAATATAATTTT-TGGAAG-TTT
***
37544098 A-GGGTCAAAAATATAATTTTCAAAAGTTTT
1 AGGGGTC-AAAATATAATTTTTGGAAG-TTT
** * *
37544128 A-GGGT-AAAACGTAATTTTTGTAAGATT
1 AGGGGTCAAAATATAATTTTTGGAAGTTT
* * * *
37544155 CGAGGTCAAAATGA-AATTTTGGAGAAATTT
1 AGGGGTCAAAAT-ATAATTTTTG-GAAGTTT
37544185 AGGGGTCAAAATATAATTTTTGGATAGTTT
1 AGGGGTCAAAATATAATTTTTGGA-AGTTT
37544215 AGGG
1 AGGG
37544219 ACCTTTAGAG
Statistics
Matches: 188, Mismatches: 40, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.01
28 33 0.18
29 84 0.45
30 57 0.30
31 12 0.06
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.38
Consensus pattern (29 bp):
AGGGGTCAAAATATAATTTTTGGAAGTTT
Found at i:37545209 original size:3 final size:3
Alignment explanation
Indices: 37545196--37545238 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
37545186 ATAATACTAT
* * *
37545196 TTA TTA CTA TTA TTA TTA TTA GTTA ATA TTA TTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
37545239 ATCATATTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:37545225 original size:16 final size:15
Alignment explanation
Indices: 37545206--37545235 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
37545196 TTATTACTAT
37545206 TATTATTATTAGTTAA
1 TATTATTATT-GTTAA
37545222 TATTATTATTGTTA
1 TATTATTATTGTTA
37545236 TTAATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TATTATTATTGTTAA
Found at i:37546773 original size:39 final size:39
Alignment explanation
Indices: 37546722--37546803 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 39
37546712 GCTCGGGGGA
* **
37546722 AGATCAAATGGCT-TCAATCTGCCCTAGTCTCGGGGTAAG
1 AGATCAAATGGCTGT-AATCTGCCCCAAACTCGGGGTAAG
* *
37546761 AGATCGAATGGCTGTTATCTGCCCCAAACTCGGGGTAAG
1 AGATCAAATGGCTGTAATCTGCCCCAAACTCGGGGTAAG
37546800 AGAT
1 AGAT
37546804 TGACTAACGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 36 0.97
40 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
AGATCAAATGGCTGTAATCTGCCCCAAACTCGGGGTAAG
Found at i:37547058 original size:92 final size:92
Alignment explanation
Indices: 37546945--37548178 Score: 1680
Period size: 92 Copynumber: 13.5 Consensus size: 92
37546935 TTTGGTATCA
*
37546945 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
*
37547010 CTTCAAGAGGATAGGAGTTGATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
* * *
37547037 AAGCTTTATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTATTGCAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
* *
37547102 CTTCAAAAGGATAGGAGTTGATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
* *
37547129 AAGCTTTATCTTGCTCTTACTATAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
*
37547194 CTTTAAGAGGAT-GGAGATTGATGTTTG
66 CTTCAAGAGGATAGGA-ATTGATGTTTG
* * *
37547221 AAACTTCATCTTGCTCTTACTACAACTTGAGAGAGAGATAAAGACTTGCTATCCAACTTTACTGC
1 AAGCTTCATCTTGCTCTTACTACAACTT--CAGAGAGATAAAGACTTGCTATCCAACTTTACTAC
*
37547286 AACTTCAAGAGGTTA-GAGATTGATGTTTG
64 AACTTCAAGAGGATAGGA-ATTGATGTTTG
* * *
37547315 AAACTTCATCTTGCTCTTACTACAACTTTAGAGAGATAAATACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
37547380 CTTCAAGAGGATA-GAGATTGATGTTTG
66 CTTCAAGAGGATAGGA-ATTGATGTTTG
* *
37547407 AAACTTCATTTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
* *
37547472 CTTCAAAAGGATAGGAATTTATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
* * * *
37547499 ATGCTTCATTTTGATCTTACTACAACTTCAGAGAGATAAAGACTTGCAATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
*
37547564 CTTCAAGAGGATAGGAATTGAT-CTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
** * * * ** * * * ** * * ** *
37547590 -CTCTT-A-C-TACAACTT-C-AGAGAGAT-AAAG-GCT--TG-CTACCCAACTTTAC--TACAA
1 AAGCTTCATCTTGC-TCTTACTACA-ACTTCAGAGAGATAAAGACTTGCTATC-CAACTTTACTA
**
37547642 C-TT--CAAGAGGATAGGAATTGATGTTTG
63 CAACTTCAAGAGGATAGGAATTGATGTTTG
* * * *
37547669 ATGCTTCATCTTGCTCTTACTACAACTTCAAAGAGACAAAGACTTACTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
37547734 CTTCAAGAGGATAGGAATTGATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
* *
37547761 AAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
37547826 CTTCAAGAGGATAGGAATTGATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
* *
37547853 ATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAACGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
*
37547918 CTTCAAAAGGATAGGAATTGATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
* * *
37547945 AAACTTCATCTTCCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
37548010 CTTCAAGAGGATAGGAATTGATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
*
37548037 ATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
* *
37548102 CTTTAAGAGGATAAGAATTGATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
* * * *
37548129 AAACTTCATCTTGTTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTAT
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTAT
37548179 TTTGATCTAA
Statistics
Matches: 1016, Mismatches: 101, Indels: 50
0.87 0.09 0.04
Matches are distributed among these distances:
78 19 0.02
79 3 0.00
80 3 0.00
81 6 0.01
82 9 0.01
83 8 0.01
84 6 0.01
85 3 0.00
86 5 0.00
87 7 0.01
88 8 0.01
89 6 0.01
90 3 0.00
91 6 0.01
92 835 0.82
93 2 0.00
94 87 0.09
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (92 bp):
AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
CTTCAAGAGGATAGGAATTGATGTTTG
Found at i:37547341 original size:52 final size:52
Alignment explanation
Indices: 37547279--37547441 Score: 145
Period size: 52 Copynumber: 3.3 Consensus size: 52
37547269 CTATCCAACT
* *
37547279 TTACTGCAACTTCAAGAGGTTAGAGATTGATGTTTGAAACTTCATCTTGCTC
1 TTACTACAACTTCAAGAGGATAGAGATTGATGTTTGAAACTTCATCTTGCTC
* * ***
37547331 TTACTACAACTT-TAGAGAGATA-A-A-T-A--CTTG---C-T-ATCCAACT-
1 TTACTACAACTTCAAGAG-GATAGAGATTGATGTTTGAAACTTCATCTTGCTC
*
37547371 TTACTACAACTTCAAGAGGATAGAGATTGATGTTTGAAACTTCATTTTGCTC
1 TTACTACAACTTCAAGAGGATAGAGATTGATGTTTGAAACTTCATCTTGCTC
37547423 TTACTACAACTTCAGAGAG
1 TTACTACAACTTCA-AGAG
37547442 ATAAAGACTT
Statistics
Matches: 83, Mismatches: 13, Indels: 29
0.66 0.10 0.23
Matches are distributed among these distances:
40 16 0.19
41 10 0.12
42 2 0.02
43 2 0.02
44 1 0.01
46 6 0.07
48 1 0.01
49 2 0.02
50 2 0.02
51 9 0.11
52 28 0.34
53 4 0.05
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (52 bp):
TTACTACAACTTCAAGAGGATAGAGATTGATGTTTGAAACTTCATCTTGCTC
Found at i:37547555 original size:184 final size:183
Alignment explanation
Indices: 37546945--37548178 Score: 1893
Period size: 184 Copynumber: 6.8 Consensus size: 183
37546935 TTTGGTATCA
*
37546945 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
* *
37547010 CTTCAAGAGGATAGGAGTTGATGTTTGAAGCTTTATCTTGCTCTTACTACAACTTCAGAGAGATA
66 CTTCAAGAGGATAGGA-TTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATA
* *
37547075 AAGACTTGCTATCCAACTTTATTGCAACTTCAAAAGGATAGGAGTTGATGTTTG
130 AAGACTTGCTATCCAACTTTACTGCAACTTCAAAAGGATAGGAATTGATGTTTG
* *
37547129 AAGCTTTATCTTGCTCTTACTATAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
* * *
37547194 CTTTAAGAGGATGGAGATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTGAGAGAGAGA
66 CTTCAAGAGGATAG-GATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTT--CAGAGAGA
* *
37547259 TAAAGACTTGCTATCCAACTTTACTGCAACTTCAAGAGGTTA-GAGATTGATGTTTG
128 TAAAGACTTGCTATCCAACTTTACTGCAACTTCAAAAGGATAGGA-ATTGATGTTTG
* * *
37547315 AAACTTCATCTTGCTCTTACTACAACTTTAGAGAGATAAATACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
*
37547380 CTTCAAGAGGATAGAGATTGATGTTTGAAACTTCATTTTGCTCTTACTACAACTTCAGAGAGATA
66 CTTCAAGAGGATAG-GATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATA
* *
37547445 AAGACTTGCTATCCAACTTTACTACAACTTCAAAAGGATAGGAATTTATGTTTG
130 AAGACTTGCTATCCAACTTTACTGCAACTTCAAAAGGATAGGAATTGATGTTTG
* * * *
37547499 ATGCTTCATTTTGATCTTACTACAACTTCAGAGAGATAAAGACTTGCAATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
37547564 CTTCAAGAGGATAGGA---A---TTG-------ATCTTGCTCTTACTACAACTTCAGAGAGATAA
66 CTTCAAGAGGATAGGATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAA
* * * *
37547616 AGGCTTGCTACCCAACTTTACTACAACTTCAAGAGGATAGGAATTGATGTTTG
131 AGACTTGCTATCCAACTTTACTGCAACTTCAAAAGGATAGGAATTGATGTTTG
* * * *
37547669 ATGCTTCATCTTGCTCTTACTACAACTTCAAAGAGACAAAGACTTACTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
*
37547734 CTTCAAGAGGATAGGAATTGATGTTTGAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATA
66 CTTCAAGAGGATAGG-ATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATA
* *
37547799 AAGACTTGCTATCCAACTTTACTACAACTTCAAGAGGATAGGAATTGATGTTTG
130 AAGACTTGCTATCCAACTTTACTGCAACTTCAAAAGGATAGGAATTGATGTTTG
* *
37547853 ATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAACGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
* *
37547918 CTTCAAAAGGATAGGAATTGATGTTTGAAACTTCATCTTCCTCTTACTACAACTTCAGAGAGATA
66 CTTCAAGAGGATAGG-ATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATA
*
37547983 AAGACTTGCTATCCAACTTTACTGCAACTTCAAGAGGATAGGAATTGATGTTTG
130 AAGACTTGCTATCCAACTTTACTGCAACTTCAAAAGGATAGGAATTGATGTTTG
*
37548037 ATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
* * * * *
37548102 CTTTAAGAGGATAAGAATTGATGTTTGAAACTTCATCTTGTTCTTACTTCAATTTCAGAGAGATA
66 CTTCAAGAGGAT-AGGATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATA
37548167 AAGACTTGCTAT
130 AAGACTTGCTAT
37548179 TTTGATCTAA
Statistics
Matches: 969, Mismatches: 61, Indels: 40
0.91 0.06 0.04
Matches are distributed among these distances:
170 154 0.16
171 1 0.00
174 1 0.00
177 6 0.01
180 1 0.00
183 2 0.00
184 628 0.65
185 8 0.01
186 168 0.17
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (183 bp):
AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
CTTCAAGAGGATAGGATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAA
AGACTTGCTATCCAACTTTACTGCAACTTCAAAAGGATAGGAATTGATGTTTG
Found at i:37547606 original size:38 final size:37
Alignment explanation
Indices: 37547515--37547663 Score: 124
Period size: 40 Copynumber: 3.8 Consensus size: 37
37547505 CATTTTGATC
* *
37547515 TTACTACAACTTC-AGAGAGATAAAGACTTGCAATCCAACT
1 TTACTACAACTTCAAGAG-GAT-AGGAATTG--ATCCAACT
***
37547555 TTACTACAACTTCAAGAGGATAGGAATTGATCTTGCT
1 TTACTACAACTTCAAGAGGATAGGAATTGATCCAACT
* *
37547592 CTTACTACAACTTC-AGAGAGATAAAGG-CTTGCTACCCAACT
1 -TTACTACAACTTCAAGAG-GAT--AGGAATTG--ATCCAACT
37547633 TTACTACAACTTCAAGAGGATAGGAATTGAT
1 TTACTACAACTTCAAGAGGATAGGAATTGAT
37547664 GTTTGATGCT
Statistics
Matches: 88, Mismatches: 12, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
37 10 0.11
38 19 0.22
39 12 0.14
40 35 0.40
41 12 0.14
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (37 bp):
TTACTACAACTTCAAGAGGATAGGAATTGATCCAACT
Found at i:37547642 original size:78 final size:78
Alignment explanation
Indices: 37547513--37547663 Score: 275
Period size: 78 Copynumber: 1.9 Consensus size: 78
37547503 TTCATTTTGA
*
37547513 TCTTACTACAACTTCAGAGAGATAAAGACTTGCAATCCAACTTTACTACAACTTCAAGAGGATAG
1 TCTTACTACAACTTCAGAGAGATAAAGACTTGCAACCCAACTTTACTACAACTTCAAGAGGATAG
37547578 GAATTGATCTTGC
66 GAATTGATCTTGC
* *
37547591 TCTTACTACAACTTCAGAGAGATAAAGGCTTGCTACCCAACTTTACTACAACTTCAAGAGGATAG
1 TCTTACTACAACTTCAGAGAGATAAAGACTTGCAACCCAACTTTACTACAACTTCAAGAGGATAG
37547656 GAATTGAT
66 GAATTGAT
37547664 GTTTGATGCT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 70 1.00
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.28
Consensus pattern (78 bp):
TCTTACTACAACTTCAGAGAGATAAAGACTTGCAACCCAACTTTACTACAACTTCAAGAGGATAG
GAATTGATCTTGC
Found at i:37548077 original size:276 final size:276
Alignment explanation
Indices: 37546945--37548178 Score: 1890
Period size: 276 Copynumber: 4.5 Consensus size: 276
37546935 TTTGGTATCA
*
37546945 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
* *
37547010 CTTCAAGAGGATAGGAGTTGATGTTTGAAGCTTTATCTTGCTCTTACTACAACTTCAGAGAGATA
66 CTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATA
* * * * *
37547075 AAGACTTGCTATCCAACTTTATTGCAACTTCAAAAGGATAGGAGTTGATGTTTGAAGCTTTATCT
131 AAGACTTGCTATCCAACTTTACTACAACTTCAAAAGGATAGGAATTGATGTTTGAAACTTCATCT
* *
37547140 TGCTCTTACTATAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACTTTAAGAGGA
196 TGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACTTCAAGAGGA
37547205 T-GGAGATTGATGTTTG
261 TAGGA-ATTGATGTTTG
* * *
37547221 AAACTTCATCTTGCTCTTACTACAACTTGAGAGAGAGATAAAGACTTGCTATCCAACTTTACTGC
1 AAGCTTCATCTTGCTCTTACTACAACTT--CAGAGAGATAAAGACTTGCTATCCAACTTTACTAC
* * *
37547286 AACTTCAAGAGGTTA-GAGATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTTAGAGAG
64 AACTTCAAGAGGATAGGA-ATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAG
* *
37547350 ATAAATACTTGCTATCCAACTTTACTACAACTTCAAGAGGATA-GAGATTGATGTTTGAAACTTC
128 ATAAAGACTTGCTATCCAACTTTACTACAACTTCAAAAGGATAGGA-ATTGATGTTTGAAACTTC
* *
37547414 ATTTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACTTCAAA
192 ATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACTTCAAG
*
37547479 AGGATAGGAATTTATGTTTG
257 AGGATAGGAATTGATGTTTG
* * * *
37547499 ATGCTTCATTTTGATCTTACTACAACTTCAGAGAGATAAAGACTTGCAATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
37547564 CTTCAAGAGGATAGG-A---A---TT---G----ATCTTGCTCTTACTACAACTTCAGAGAGATA
66 CTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATA
* * * **
37547615 AAGGCTTGCTACCCAACTTTACTACAACTTCAAGAGGATAGGAATTGATGTTTGATGCTTCATCT
131 AAGACTTGCTATCCAACTTTACTACAACTTCAAAAGGATAGGAATTGATGTTTGAAACTTCATCT
* * *
37547680 TGCTCTTACTACAACTTCAAAGAGACAAAGACTTACTATCCAACTTTACTACAACTTCAAGAGGA
196 TGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACTTCAAGAGGA
37547745 TAGGAATTGATGTTTG
261 TAGGAATTGATGTTTG
* *
37547761 AAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
*
37547826 CTTCAAGAGGATAGGAATTGATGTTTGATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATA
66 CTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATA
*
37547891 ACGACTTGCTATCCAACTTTACTACAACTTCAAAAGGATAGGAATTGATGTTTGAAACTTCATCT
131 AAGACTTGCTATCCAACTTTACTACAACTTCAAAAGGATAGGAATTGATGTTTGAAACTTCATCT
* *
37547956 TCCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCAACTTCAAGAGGA
196 TGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACTTCAAGAGGA
37548021 TAGGAATTGATGTTTG
261 TAGGAATTGATGTTTG
*
37548037 ATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
* * * * * *
37548102 CTTTAAGAGGATAAGAATTGATGTTTGAAACTTCATCTTGTTCTTACTTCAATTTCAGAGAGATA
66 CTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATA
37548167 AAGACTTGCTAT
131 AAGACTTGCTAT
37548179 TTTGATCTAA
Statistics
Matches: 869, Mismatches: 68, Indels: 42
0.89 0.07 0.04
Matches are distributed among these distances:
262 236 0.27
263 3 0.00
266 1 0.00
269 4 0.00
272 2 0.00
275 1 0.00
276 370 0.43
277 5 0.01
278 244 0.28
279 3 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (276 bp):
AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
CTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATA
AAGACTTGCTATCCAACTTTACTACAACTTCAAAAGGATAGGAATTGATGTTTGAAACTTCATCT
TGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACTTCAAGAGGA
TAGGAATTGATGTTTG
Found at i:37549699 original size:29 final size:28
Alignment explanation
Indices: 37549638--37549707 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 28
37549628 GCAAAATGGT
*
37549638 AATTTTGAGAAAATTTGAGGGTAAAAATGA
1 AATTTT-AG-AAATTCGAGGGTAAAAATGA
37549668 AATTTTAGAAATTCGAGGGTAAAACTAT-A
1 AATTTTAGAAATTCGAGGGTAAAA--ATGA
37549697 AATTTTAGAAA
1 AATTTTAGAAA
37549708 AATCAAGATC
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
28 15 0.41
29 14 0.38
30 8 0.22
ACGTcount: A:0.47, C:0.03, G:0.19, T:0.31
Consensus pattern (28 bp):
AATTTTAGAAATTCGAGGGTAAAAATGA
Found at i:37549749 original size:59 final size:59
Alignment explanation
Indices: 37549699--37549878 Score: 254
Period size: 59 Copynumber: 3.1 Consensus size: 59
37549689 AAACTATAAA
* * *
37549699 TTTTAGAAAAATCAAGATCAAAAACAAAATTTTTGGACATCTGGGGGTAAAATGGTCAT
1 TTTTAGAAAAATCAGGATCAAAAACAAAATTTTTGGACATCCGGGGGTAAAATGGTAAT
** ** *
37549758 TTTTAGAAAAATTTGGATCAAAAATGAAATTTTTGGACATCCGAGGGTAAAATGGTAAT
1 TTTTAGAAAAATCAGGATCAAAAACAAAATTTTTGGACATCCGGGGGTAAAATGGTAAT
* * *
37549817 TTTTAGAAAAATCGGGATCAAAAACAGAATTTTTGGATATCCGGGGGTAAAATGG-AAT
1 TTTTAGAAAAATCAGGATCAAAAACAAAATTTTTGGACATCCGGGGGTAAAATGGTAAT
37549875 TTTT
1 TTTT
37549879 GGAATTTTAG
Statistics
Matches: 106, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
58 7 0.07
59 99 0.93
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (59 bp):
TTTTAGAAAAATCAGGATCAAAAACAAAATTTTTGGACATCCGGGGGTAAAATGGTAAT
Found at i:37549836 original size:118 final size:116
Alignment explanation
Indices: 37549624--37549911 Score: 316
Period size: 118 Copynumber: 2.5 Consensus size: 116
37549614 TGGACTCTTG
* * *
37549624 GGGGGCAAAATGGTAATTTTGAGAAAATTTGAGGGTAAAAATGAAATTTTAGAAATTCGAGGGTA
1 GGGGGTAAAATGGTAATTTTGAGAAAATTT-AGGATAAAAATGAAATTTTAGAAATCCGAGGGTA
*
37549689 AAACTATAAATTTTAGAAAAATCAAGATCAAAAACAAAATTTTTGGACATCT
65 AAACTATAAATTTTAGAAAAATCAAGATCAAAAACAAAATTTTTGGACATCC
* * * *
37549741 GGGGGTAAAATGGTCATTTTTAGAAAAATTT-GGATCAAAAATGAAATTTTTGGACATCCGAGGG
1 GGGGGTAAAATGGTAATTTTGAG-AAAATTTAGGAT-AAAAATGAAA-TTTTAGAAATCCGAGGG
* * ** * *
37549805 TAAAA-TGGTAATTTTTAGAAAAATCGGGATCAAAAACAGAATTTTTGGATATCC
63 TAAAACT-ATAAATTTTAGAAAAATCAAGATCAAAAACAAAATTTTTGGACATCC
* * * *
37549859 GGGGGTAAAATGG-AATTTTTG-G-AATTTTAGGGGTAAAAATGTAATTTTTGAAA
1 GGGGGTAAAATGGTAA-TTTTGAGAAAATTTA-GGATAAAAATGAAATTTTAGAAA
37549912 GTTTAGTGGT
Statistics
Matches: 143, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
115 12 0.08
116 12 0.08
117 36 0.25
118 83 0.58
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (116 bp):
GGGGGTAAAATGGTAATTTTGAGAAAATTTAGGATAAAAATGAAATTTTAGAAATCCGAGGGTAA
AACTATAAATTTTAGAAAAATCAAGATCAAAAACAAAATTTTTGGACATCC
Found at i:37550001 original size:28 final size:29
Alignment explanation
Indices: 37549860--37550023 Score: 156
Period size: 29 Copynumber: 5.7 Consensus size: 29
37549850 TGGATATCCG
* *
37549860 GGGGT-AAAATGGAATTTTTGGAA-TTTT
1 GGGGTCAAAATGTAATTTTTGAAAGTTTT
* *
37549887 AGGGGTAAAAATGTAATTTTTGAAAGTTTA
1 -GGGGTCAAAATGTAATTTTTGAAAGTTTT
* **
37549917 GTGGTCAAAATGTAATTTTCCAAGAGTTTT
1 GGGGTCAAAATGTAATTTTTGAA-AGTTTT
*
37549947 GGGGTCAAAAATATAATTTTTTG-AAGTTTT
1 GGGGTC-AAAATGTAA-TTTTTGAAAGTTTT
* *
37549977 GGGGT-AAAATGTAATTTTTGTAAGTTTC
1 GGGGTCAAAATGTAATTTTTGAAAGTTTT
**
37550005 AAGGTCAAAATGTAATTTT
1 GGGGTCAAAATGTAATTTT
37550024 GGAGAAATTC
Statistics
Matches: 113, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
27 6 0.05
28 22 0.19
29 48 0.42
30 24 0.21
31 9 0.08
32 4 0.04
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.40
Consensus pattern (29 bp):
GGGGTCAAAATGTAATTTTTGAAAGTTTT
Found at i:37550039 original size:88 final size:89
Alignment explanation
Indices: 37549872--37550063 Score: 232
Period size: 88 Copynumber: 2.2 Consensus size: 89
37549862 GGTAAAATGG
*
37549872 AATTTTTGGAA-TTTTAGGGGTAAAAATGTAATTTTTGAAAGTTTAGTGGTCAAAATGTAATTTT
1 AATTTTTGGAAGTTTTAGGGGTAAAAATGTAATTTTTGAAAGTTTAGAGGTCAAAATGTAATTTT
* ** *
37549936 CCAAGAGTTTTGGGGTCAAAAATAT
66 CCAAGAATTCAGGGGTCAAAAA-AC
* *
37549961 AATTTTTTGAAGTTTT-GGGGT-AAAATGTAATTTTTGTAAGTTTCA-AGGTCAAAATGTAATTT
1 AATTTTTGGAAGTTTTAGGGGTAAAAATGTAATTTTTGAAAGTTT-AGAGGTCAAAATGTAATTT
**
37550023 T-GGAGAAATTCAGGGGTCAAAAAAC
65 TCCAAG-AATTCAGGGGTCAAAAAAC
37550048 AATTTTTGGATAGTTT
1 AATTTTTGGA-AGTTT
37550064 AAGGACCTTC
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
87 12 0.13
88 57 0.64
89 16 0.18
90 4 0.04
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (89 bp):
AATTTTTGGAAGTTTTAGGGGTAAAAATGTAATTTTTGAAAGTTTAGAGGTCAAAATGTAATTTT
CCAAGAATTCAGGGGTCAAAAAAC
Found at i:37550950 original size:3 final size:3
Alignment explanation
Indices: 37550935--37550983 Score: 55
Period size: 3 Copynumber: 16.0 Consensus size: 3
37550925 ATAATTCTAT
* *
37550935 TTA TTA CTA TTA TTA TTA TTA TTA TTA GTTGA -TA TTA TTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TT-A TTA TTA TTA TTA TTA
37550981 TTA
1 TTA
37550984 ATCATATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 1 0.03
3 35 0.90
4 2 0.05
5 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:37551473 original size:20 final size:21
Alignment explanation
Indices: 37551448--37551488 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
37551438 TTCCCTTTTT
37551448 TGCAAGT-CAGCTGGTGGCAG
1 TGCAAGTACAGCTGGTGGCAG
*
37551468 TGCAAGTAGGAGCTGGTGGCA
1 TGCAAGTA-CAGCTGGTGGCA
37551489 TTATTACTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.22, C:0.17, G:0.41, T:0.20
Consensus pattern (21 bp):
TGCAAGTACAGCTGGTGGCAG
Found at i:37551774 original size:17 final size:17
Alignment explanation
Indices: 37551702--37551798 Score: 61
Period size: 17 Copynumber: 5.6 Consensus size: 17
37551692 ATTTAATTTT
*
37551702 AATTTAAAATTAAATTTA
1 AATTTAAAA-TAAATTCA
* * *
37551720 ATTTTAAGATAAATCCA
1 AATTTAAAATAAATTCA
* * * **
37551737 AACTCAAAATGAATTTG
1 AATTTAAAATAAATTCA
37551754 AATTTAAAATAAATTCA
1 AATTTAAAATAAATTCA
* *
37551771 AATTTATTTAA-AAATTAA
1 AATTTA--AAATAAATTCA
37551789 AATTTAAAAT
1 AATTTAAAAT
37551799 TTAGATGCAA
Statistics
Matches: 56, Mismatches: 20, Indels: 7
0.67 0.24 0.08
Matches are distributed among these distances:
16 2 0.04
17 33 0.59
18 19 0.34
19 2 0.04
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (17 bp):
AATTTAAAATAAATTCA
Found at i:37553578 original size:22 final size:22
Alignment explanation
Indices: 37553550--37553596 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
37553540 TTCAATAATG
37553550 AGTCGTTGTGTGGTTTTGTTTT
1 AGTCGTTGTGTGGTTTTGTTTT
37553572 AGTCGTTGTGTGGTTTTGTTTT
1 AGTCGTTGTGTGGTTTTGTTTT
37553594 AGT
1 AGT
37553597 TCATTGTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.06, C:0.04, G:0.32, T:0.57
Consensus pattern (22 bp):
AGTCGTTGTGTGGTTTTGTTTT
Found at i:37558250 original size:16 final size:16
Alignment explanation
Indices: 37558229--37558260 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
37558219 TTGTTAATGT
37558229 GGTATTAAACAAGTGA
1 GGTATTAAACAAGTGA
37558245 GGTATTAAACAAGTGA
1 GGTATTAAACAAGTGA
37558261 AAAGAGATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (16 bp):
GGTATTAAACAAGTGA
Found at i:37566694 original size:73 final size:70
Alignment explanation
Indices: 37566571--37566716 Score: 238
Period size: 73 Copynumber: 2.0 Consensus size: 70
37566561 CCTAACATCA
* *
37566571 TCCCCGGGCACCAACCAAGGTTTCCTCACTATCTTTATAGTTTACGGATGTTTTCTTTACCAGAA
1 TCCCCGGGCACCAACCAAGGTTTCCTCACTATCTTTACAGTTTACAGATGTTTTCTTTACCAGAA
37566636 TGTCT
66 TGTCT
*
37566641 TCCCCGGGCACCAACCAAGGTTTTCTCCTCACTATCTTTACGGTTTACAGATGTTTTCTTTACCA
1 TCCCCGGGCACCAACCAAGG--TT-TCCTCACTATCTTTACAGTTTACAGATGTTTTCTTTACCA
37566706 GAATGTCT
63 GAATGTCT
37566714 TCC
1 TCC
37566717 ACTGCAGGAA
Statistics
Matches: 70, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
70 20 0.29
72 2 0.03
73 48 0.69
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.36
Consensus pattern (70 bp):
TCCCCGGGCACCAACCAAGGTTTCCTCACTATCTTTACAGTTTACAGATGTTTTCTTTACCAGAA
TGTCT
Found at i:37567683 original size:105 final size:104
Alignment explanation
Indices: 37567493--37567800 Score: 343
Period size: 105 Copynumber: 2.9 Consensus size: 104
37567483 TAGTATTAAG
* * ** *
37567493 TACATGGAGATGCACAAATATGCAAAACAAAGTGTATAAAAACTATAAGTCTATTTTATTAT-AC
1 TACATGGAGATACACAAATATGCAAAACAAA--GTATAAAAACTATGAGTCTACATCATTATAAC
*
37567557 CTTGGGAAAAATAGCCCTGCAATCACCACAATTAATCCAAA
64 CTTGGGAAAAAGAGCCCTGCAATCACCACAATTAATCCAAA
* * * *
37567598 TACATGGAGATACACAATTATGCAAAGCAAAGTATACAAAACTGTGAGCCTACATCATTATAACC
1 TACATGGAGATACACAAATATGCAAAACAAAGTATA-AAAACTATGAGTCTACATCATTATAACC
* * * * **
37567663 TTGGAAAAAAGATCCATGCAATCGCCACAAAGAATCCAAA
65 TTGGGAAAAAGAGCCCTGCAATCACCACAATTAATCCAAA
* * *
37567703 TACATGGACG-TACACAACTATGCAAAACAAAGGATATAAAACTATGAGTCAACA-CTATTATAA
1 TACATGGA-GATACACAAATATGCAAAACAAAGTATA-AAAACTATGAGTCTACATC-ATTATAA
* **
37567766 CCTTGGGGAAAAGAGCCCTGCAGCCACCACAATTA
63 CCTTGGGAAAAAGAGCCCTGCAATCACCACAATTA
37567801 GGGGAGAAGA
Statistics
Matches: 167, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
103 5 0.03
104 19 0.11
105 142 0.85
106 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.14, T:0.22
Consensus pattern (104 bp):
TACATGGAGATACACAAATATGCAAAACAAAGTATAAAAACTATGAGTCTACATCATTATAACCT
TGGGAAAAAGAGCCCTGCAATCACCACAATTAATCCAAA
Found at i:37569909 original size:35 final size:36
Alignment explanation
Indices: 37569828--37569917 Score: 89
Period size: 35 Copynumber: 2.6 Consensus size: 36
37569818 TATCTTTAAA
* * * *
37569828 ATAATAA-CAAA-ATTAACAATAAAACAAGTGTTAT
1 ATAATAATCAAATATTAACAACAAAACAAGTATAAC
*
37569862 ATAAT-ATCCAAATATTAACAACAAAA-TAGTATAAC
1 ATAATAAT-CAAATATTAACAACAAAACAAGTATAAC
*
37569897 ATAATAATCAAATAGTAACAA
1 ATAATAATCAAATATTAACAA
37569918 AACAATAACA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
33 1 0.02
34 5 0.11
35 26 0.57
36 14 0.30
ACGTcount: A:0.59, C:0.11, G:0.04, T:0.26
Consensus pattern (36 bp):
ATAATAATCAAATATTAACAACAAAACAAGTATAAC
Found at i:37574668 original size:15 final size:17
Alignment explanation
Indices: 37574636--37574670 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
37574626 TCATAAAGAT
37574636 TTTGTACTTCTATTTTA
1 TTTGTACTTCTATTTTA
37574653 TTTG-ACTTCT-TTTTA
1 TTTGTACTTCTATTTTA
37574668 TTT
1 TTT
37574671 TAATAATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.44
16 6 0.33
17 4 0.22
ACGTcount: A:0.14, C:0.11, G:0.06, T:0.69
Consensus pattern (17 bp):
TTTGTACTTCTATTTTA
Found at i:37579228 original size:66 final size:65
Alignment explanation
Indices: 37579123--37579247 Score: 223
Period size: 66 Copynumber: 1.9 Consensus size: 65
37579113 ATGAAGAGTC
* *
37579123 AGAGCAACATAGAACACAAGTATGAATGGATGAAAATAAATTGGCAATATGAAAGAGGCTCTATT
1 AGAGCAACACAGAACACAAGTATGAATGGATGAAAATAAATTGGCAATATAAAAGAGGCTCTATT
37579188 AGAGTCAACACAGAACACAAGTATGAATGGATGAAAATAAATTGGCAATATAAAAGAGGC
1 AGAG-CAACACAGAACACAAGTATGAATGGATGAAAATAAATTGGCAATATAAAAGAGGC
37579248 CGAGTTACAG
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
65 4 0.07
66 53 0.93
ACGTcount: A:0.48, C:0.11, G:0.22, T:0.19
Consensus pattern (65 bp):
AGAGCAACACAGAACACAAGTATGAATGGATGAAAATAAATTGGCAATATAAAAGAGGCTCTATT
Found at i:37583821 original size:31 final size:31
Alignment explanation
Indices: 37583778--37583847 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 31
37583768 AAAAAGTCGG
*
37583778 TATTTGAACAC-TTCAAAAAAGATTTAATTTT
1 TATTT-AACACTTTCAAAAAAGACTTAATTTT
* *
37583809 TATTTAACCACTTTTAAAAAAGACTTGATTTT
1 TATTTAA-CACTTTCAAAAAAGACTTAATTTT
37583841 TATTTAA
1 TATTTAA
37583848 TCATTTTGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 2 0.06
31 8 0.24
32 24 0.71
ACGTcount: A:0.40, C:0.10, G:0.06, T:0.44
Consensus pattern (31 bp):
TATTTAACACTTTCAAAAAAGACTTAATTTT
Found at i:37583953 original size:47 final size:46
Alignment explanation
Indices: 37583884--37583980 Score: 167
Period size: 47 Copynumber: 2.1 Consensus size: 46
37583874 TAAATAGAAA
37583884 TAAAATCACTTAAAATAATATTTGTTATTTACTTTAATTTTTTTAAT
1 TAAAATCACTTAAAATAATATTTGTTATTTA-TTTAATTTTTTTAAT
* *
37583931 TAAAATCACTTATAATAATATTTGTTATTTATTTTATTTTTTTAAT
1 TAAAATCACTTAAAATAATATTTGTTATTTATTTAATTTTTTTAAT
37583977 TAAA
1 TAAA
37583981 TTGATATTCA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 18 0.38
47 30 0.62
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (46 bp):
TAAAATCACTTAAAATAATATTTGTTATTTATTTAATTTTTTTAAT
Found at i:37589365 original size:25 final size:27
Alignment explanation
Indices: 37589320--37589375 Score: 82
Period size: 25 Copynumber: 2.1 Consensus size: 27
37589310 TTTATATTTC
37589320 AAATTTAAAAAACTTTACTTAAAATTA
1 AAATTTAAAAAACTTTACTTAAAATTA
37589347 AAATTT-AAAAA--TTATCTTAAAATTA
1 AAATTTAAAAAACTTTA-CTTAAAATTA
37589372 AAAT
1 AAAT
37589376 ATATGCATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 3 0.11
25 14 0.50
26 5 0.18
27 6 0.21
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (27 bp):
AAATTTAAAAAACTTTACTTAAAATTA
Found at i:37589770 original size:26 final size:26
Alignment explanation
Indices: 37589741--37589792 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
37589731 ATCAACAAAC
*
37589741 TATATATCAAATTTAAAATAAAAAAT
1 TATATATCAAATTAAAAATAAAAAAT
37589767 TATATATCAAATTAAAAATAAAAAAT
1 TATATATCAAATTAAAAATAAAAAAT
37589793 ATACCTAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (26 bp):
TATATATCAAATTAAAAATAAAAAAT
Found at i:37593740 original size:25 final size:25
Alignment explanation
Indices: 37593712--37593783 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 25
37593702 AATTCGAGAC
* *
37593712 TTATTAATATTTATTTATAATTATA
1 TTATTAATAATTATTTATAATTAAA
* *
37593737 TTA-TATTTAATTATGTT-TAAATAAA
1 TTATTA-ATAATTAT-TTATAATTAAA
*
37593762 TTATTAGTAATTATTTATAATT
1 TTATTAATAATTATTTATAATT
37593784 CTTCCAATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
24 4 0.11
25 29 0.78
26 4 0.11
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (25 bp):
TTATTAATAATTATTTATAATTAAA
Found at i:37597883 original size:19 final size:21
Alignment explanation
Indices: 37597845--37597883 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
37597835 TTTATGTTTA
*
37597845 TATATTGTATACATATATAAT
1 TATATTGTATACAAATATAAT
37597866 TATATT-TAT-CAAATATAA
1 TATATTGTATACAAATATAA
37597884 AAATAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (21 bp):
TATATTGTATACAAATATAAT
Found at i:37605340 original size:17 final size:17
Alignment explanation
Indices: 37605318--37605409 Score: 93
Period size: 17 Copynumber: 5.5 Consensus size: 17
37605308 TTTTATTATT
*
37605318 AATTTAAATTTTAATTA
1 AATTTAAATTTAAATTA
**
37605335 AATTTAAATTTAAAGCA
1 AATTTAAATTTAAATTA
37605352 AATTTAAATTT---TTA
1 AATTTAAATTTAAATTA
* *
37605366 CATTTAAATTTAAAATA
1 AATTTAAATTTAAATTA
37605383 AATTTAAATTTAACCA-TA
1 AATTTAAATTTAA--ATTA
37605401 AATTTAAAT
1 AATTTAAAT
37605410 CTTGTTCAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
14 11 0.18
17 39 0.63
18 11 0.18
19 1 0.02
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (17 bp):
AATTTAAATTTAAATTA
Found at i:37605341 original size:6 final size:6
Alignment explanation
Indices: 37605318--37605409 Score: 73
Period size: 6 Copynumber: 15.5 Consensus size: 6
37605308 TTTTATTATT
* **
37605318 AATTTA AATTTT AA-TTA AATTTA AATTTA AA-GCA AATTTA AATTTTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AA--TTTA
* * ***
37605366 CATTTA AATTTA AA-ATA AATTTA AATTTA ACCATA AATTTA AAT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AAT
37605410 CTTGTTCAAA
Statistics
Matches: 65, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
5 11 0.17
6 49 0.75
8 5 0.08
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (6 bp):
AATTTA
Found at i:37605805 original size:76 final size:76
Alignment explanation
Indices: 37605694--37606219 Score: 747
Period size: 76 Copynumber: 7.1 Consensus size: 76
37605684 TCGAGGTTTC
* * *
37605694 ATCTTACTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCTACTTTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAATTTC--AGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAG
*
37605759 AAGATAGGAAATG
64 AGGATAGGAAATG
* * * * * * *
37605772 ATGTTGCTCTTACTTCAATTTTAGAGATAAAGACTAGTTATCCAACTCTACGTCAATTTTAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAG
37605837 GATAGGAAATG
66 GATAGGAAATG
* *
37605848 ATTTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTC-A-A-
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAG
37605910 G--AGGAAATG
66 GATAGGAAATG
* *
37605919 ATCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAAC-TTACTTCAATTTCAAGGG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAG
*
37605983 GATAGGAAATA
66 GATAGGAAATG
*
37605994 ATCTTACTCTTACTTCAA-TTCAGAGATAAAGACTTGATATCCAAC-TTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAG
*
37606057 GATAGGAAAAG
66 GATAGGAAATG
*
37606068 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTG-TCATCCAACTCTACTTCAATTTC-A-A
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAACTTTACTTCAATTTCAAGA
37606130 -G--AGGAAATG
65 GGATAGGAAATG
*
37606139 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAG
37606204 GATAGGAAATG
66 GATAGGAAATG
37606215 ATCTT
1 ATCTT
37606220 AGTGCTTCAT
Statistics
Matches: 405, Mismatches: 29, Indels: 30
0.87 0.06 0.06
Matches are distributed among these distances:
70 12 0.03
71 116 0.29
72 2 0.00
73 4 0.01
74 74 0.18
75 52 0.13
76 126 0.31
78 19 0.05
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (76 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAG
GATAGGAAATG
Found at i:37605866 original size:38 final size:37
Alignment explanation
Indices: 37605743--37605876 Score: 107
Period size: 38 Copynumber: 3.6 Consensus size: 37
37605733 CTATCCTACT
* *
37605743 TTACTTCAATTTCAAGAAGATAGGAAATGATGTTGCTC
1 TTACTTCAATTTTAAG-AGATAGGAAATGATTTTGCTC
* * *
37605781 TTACTTCAATTTT-AGAGATA--AAGACT-AGTTATCCAAC
1 TTACTTCAATTTTAAGAGATAGGAA-A-TGA-TTTTGC-TC
*
37605818 TCTACGTCAATTTTAAGAGGATAGGAAATGATTTTGCTC
1 T-TACTTCAATTTTAAGA-GATAGGAAATGATTTTGCTC
*
37605857 TTACTTCAA-TTTCAGAGATA
1 TTACTTCAATTTTAAGAGATA
37605877 AAGACTTGAT
Statistics
Matches: 75, Mismatches: 11, Indels: 22
0.69 0.10 0.20
Matches are distributed among these distances:
34 2 0.03
35 2 0.03
36 13 0.17
37 10 0.13
38 30 0.40
39 5 0.07
40 9 0.12
41 2 0.03
42 2 0.03
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (37 bp):
TTACTTCAATTTTAAGAGATAGGAAATGATTTTGCTC
Found at i:37605954 original size:71 final size:72
Alignment explanation
Indices: 37605694--37606202 Score: 652
Period size: 71 Copynumber: 6.9 Consensus size: 72
37605684 TCGAGGTTTC
* * * *
37605694 ATCTTACTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCTACTTTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAATTTC--AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTC---
37605759 AAGATAGGAAATG
61 AAGA-AGGAAATG
* * * * * *
37605772 ATGTTGCTCTTACTTCAATTTTAGAGATAAAGACTAGTTATCCAACTCTACGTCAATTTTAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAA-TTTCA-A-
37605837 GATAGGAAATG
63 GA-AGGAAATG
*
37605848 ATTTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAG-A
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAA
37605912 GGAAATG
66 GGAAATG
*
37605919 ATCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACT-TACTTCAATTTCAAGGG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAA---
*
37605983 GATAGGAAATA
63 GA-AGGAAATG
*
37605994 ATCTTACTCTTACTTCAA-TTCAGAGATAAAGACTTGATATCCAACT-TACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTC-A-A-
*
37606057 GATAGGAAAAG
63 GA-AGGAAATG
37606068 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTG-TCATCCAACTCTACTTCAATTTCAAG-
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAACTCTACTTCAATTTCAAGA
37606131 AGGAAATG
65 AGGAAATG
* *
37606139 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGA
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGA
37606203 GGATAGGAAA
Statistics
Matches: 392, Mismatches: 24, Indels: 36
0.87 0.05 0.08
Matches are distributed among these distances:
70 14 0.04
71 119 0.30
72 1 0.00
73 3 0.01
74 71 0.18
75 58 0.15
76 104 0.27
77 3 0.01
78 19 0.05
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (72 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAA
GGAAATG
Found at i:37606089 original size:220 final size:223
Alignment explanation
Indices: 37605694--37606220 Score: 855
Period size: 220 Copynumber: 2.4 Consensus size: 223
37605684 TCGAGGTTTC
* *
37605694 ATCTTACTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCTACTTTACTTCAATTTCAAG
1 ATCTTACTCTTACTTCAATTTC--AGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAG
* * * * *
37605759 AAGATAGGAAATGATGTTGCTCTTACTTCAATTTTAGAGATAAAGACTAGTTATCCAACTCTACG
64 AGGATAGGAAATGATCTTACTCTTACTTCAATTTCAGAGATAAAGACTAGATATCCAACTCTACG
* * *
37605824 TCAATTTTAAGAGGATAGGAAATGATTTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-A
129 TCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTG-TCA
37605888 TCCAACTCTACTTCAATTTCAAGAGGAAATG
193 TCCAACTCTACTTCAATTTCAAGAGGAAATG
*
37605919 ATCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAAC-TTACTTCAATTTCAAGGG
1 ATCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAG
* * *
37605983 GATAGGAAATAATCTTACTCTTACTTCAA-TTCAGAGATAAAGACTTGATATCCAACT-TACTTC
66 GATAGGAAATGATCTTACTCTTACTTCAATTTCAGAGATAAAGACTAGATATCCAACTCTACGTC
37606046 AATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTCATCC
131 AATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTCATCC
37606111 AACTCTACTTCAATTTCAAGAGGAAATG
196 AACTCTACTTCAATTTCAAGAGGAAATG
* *
37606139 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAG
37606204 GATAGGAAATGATCTTA
66 GATAGGAAATGATCTTA
37606221 GTGCTTCATC
Statistics
Matches: 282, Mismatches: 18, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
219 1 0.00
220 137 0.49
221 58 0.21
222 42 0.15
223 22 0.08
225 22 0.08
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.34
Consensus pattern (223 bp):
ATCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAG
GATAGGAAATGATCTTACTCTTACTTCAATTTCAGAGATAAAGACTAGATATCCAACTCTACGTC
AATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTCATCC
AACTCTACTTCAATTTCAAGAGGAAATG
Found at i:37606704 original size:135 final size:135
Alignment explanation
Indices: 37606510--37606817 Score: 544
Period size: 135 Copynumber: 2.3 Consensus size: 135
37606500 CAAATCTTCA
* * *
37606510 TGGTACTGAATCCACCATCGCGGTATTAGATTTTTTTTTCTTCATGTATCGCCGTTACGACTTAG
1 TGGTACTGGATCCACCGTTGCGGTATTAGA--TTTTTTTCTTCATGTATCGCCGTTACGACTTAG
37606575 ATCTTTCTCGTCGTGTCTTCGTGGTACTAAATCTGCCGTTGCGATCTTAGATCTTTCCCTTCTAT
64 ATCTTTCTCGTCGTGTCTTCGTGGTACTAAATCTGCCGTTGCGATCTTAGATCTTTCCCTTCTAT
37606640 ATCTTTG
129 ATCTTTG
37606647 TGGTACTGGATCCACCGTTGCGGTATTAGATTTTTTTCTTCATGTATCGCCGTTACGACTTAGAT
1 TGGTACTGGATCCACCGTTGCGGTATTAGATTTTTTTCTTCATGTATCGCCGTTACGACTTAGAT
*
37606712 CTTTCTCGTCGTGTCTTCGTGGTACTAAATCTGCCGTTGCGATCTTAGATCTTTCCCTTCTGTAT
66 CTTTCTCGTCGTGTCTTCGTGGTACTAAATCTGCCGTTGCGATCTTAGATCTTTCCCTTCTATAT
37606777 CTTTG
131 CTTTG
* *
37606782 TGGTACTGGATCCACCGTTGCGGTCTTAGATCTTTT
1 TGGTACTGGATCCACCGTTGCGGTATTAGATTTTTT
37606818 CGGTCCATGC
Statistics
Matches: 165, Mismatches: 6, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
135 138 0.84
137 27 0.16
ACGTcount: A:0.16, C:0.23, G:0.19, T:0.42
Consensus pattern (135 bp):
TGGTACTGGATCCACCGTTGCGGTATTAGATTTTTTTCTTCATGTATCGCCGTTACGACTTAGAT
CTTTCTCGTCGTGTCTTCGTGGTACTAAATCTGCCGTTGCGATCTTAGATCTTTCCCTTCTATAT
CTTTG
Found at i:37606800 original size:51 final size:50
Alignment explanation
Indices: 37606696--37606816 Score: 136
Period size: 51 Copynumber: 2.4 Consensus size: 50
37606686 TCATGTATCG
* * * **
37606696 CCGTTACGA-CTTAGATCTTTCTCGTCGTGTCTTCGTGGTACTAAATCTG
1 CCGTTGCGATCTTAGATCTTTCCCGTCGTATCTTCGTGGTACTAAATCCA
* * **
37606745 CCGTTGCGATCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGGATCCA
1 CCGTTGCGATCTTAGATCTTTCCCGTC-GTATCTTCGTGGTACTAAATCCA
*
37606796 CCGTTGCGGTCTTAGATCTTT
1 CCGTTGCGATCTTAGATCTTT
37606817 TCGGTCCATG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
49 8 0.13
50 15 0.25
51 37 0.62
ACGTcount: A:0.14, C:0.25, G:0.21, T:0.40
Consensus pattern (50 bp):
CCGTTGCGATCTTAGATCTTTCCCGTCGTATCTTCGTGGTACTAAATCCA
Found at i:37615088 original size:17 final size:17
Alignment explanation
Indices: 37615066--37615157 Score: 93
Period size: 17 Copynumber: 5.5 Consensus size: 17
37615056 TTTTATTATT
*
37615066 AATTTAAATTTTAATTA
1 AATTTAAATTTAAATTA
**
37615083 AATTTAAATTTAAAGCA
1 AATTTAAATTTAAATTA
37615100 AATTTAAATTT---TTA
1 AATTTAAATTTAAATTA
* *
37615114 CATTTAAATTTAAAATA
1 AATTTAAATTTAAATTA
37615131 AATTTAAATTTAACCA-TA
1 AATTTAAATTTAA--ATTA
37615149 AATTTAAAT
1 AATTTAAAT
37615158 CTTGTTCAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
14 11 0.18
17 39 0.63
18 11 0.18
19 1 0.02
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (17 bp):
AATTTAAATTTAAATTA
Found at i:37615089 original size:6 final size:6
Alignment explanation
Indices: 37615066--37615157 Score: 73
Period size: 6 Copynumber: 15.5 Consensus size: 6
37615056 TTTTATTATT
* **
37615066 AATTTA AATTTT AA-TTA AATTTA AATTTA AA-GCA AATTTA AATTTTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AA--TTTA
* * ***
37615114 CATTTA AATTTA AA-ATA AATTTA AATTTA ACCATA AATTTA AAT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AAT
37615158 CTTGTTCAAA
Statistics
Matches: 65, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
5 11 0.17
6 49 0.75
8 5 0.08
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (6 bp):
AATTTA
Found at i:37615884 original size:40 final size:40
Alignment explanation
Indices: 37615840--37615951 Score: 154
Period size: 41 Copynumber: 2.8 Consensus size: 40
37615830 GATAAAGCAA
* *
37615840 TAGCGACGTTTATTTAAAGCGTCGCTAAAGGTAAGAGAAT
1 TAGCGGCGTTTATTAAAAGCGTCGCTAAAGGTAAGAGAAT
* *
37615880 TAGCGGCGCTTATTGAAAAGCGCCGCTAAAGGTAAGAGAAT
1 TAGCGGCGTTTATT-AAAAGCGTCGCTAAAGGTAAGAGAAT
37615921 TAGCGGCGCTTT-TGTAAAAGCGTCGCTAAAG
1 TAGCGGCG-TTTAT-TAAAAGCGTCGCTAAAG
37615952 ATCCGAGGAA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
40 12 0.19
41 48 0.76
42 3 0.05
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (40 bp):
TAGCGGCGTTTATTAAAAGCGTCGCTAAAGGTAAGAGAAT
Found at i:37615889 original size:24 final size:24
Alignment explanation
Indices: 37615857--37615930 Score: 63
Period size: 24 Copynumber: 3.4 Consensus size: 24
37615847 GTTTATTTAA
*
37615857 AGCGTCGCTAAAGGTAAGAGAATT
1 AGCGGCGCTAAAGGTAAGAGAATT
* *
37615881 AGCGGCGCT-TA--T-TGA-AA--
1 AGCGGCGCTAAAGGTAAGAGAATT
*
37615898 AGCGCCGCTAAAGGTAAGAGAATT
1 AGCGGCGCTAAAGGTAAGAGAATT
37615922 AGCGGCGCT
1 AGCGGCGCT
37615931 TTTGTAAAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 14
0.63 0.12 0.25
Matches are distributed among these distances:
17 8 0.22
18 1 0.03
19 2 0.06
20 3 0.08
21 3 0.08
22 2 0.06
23 1 0.03
24 16 0.44
ACGTcount: A:0.32, C:0.18, G:0.31, T:0.19
Consensus pattern (24 bp):
AGCGGCGCTAAAGGTAAGAGAATT
Found at i:37616197 original size:41 final size:41
Alignment explanation
Indices: 37615880--37616197 Score: 333
Period size: 41 Copynumber: 7.8 Consensus size: 41
37615870 GTAAGAGAAT
* * *
37615880 TAGCGGCGCTTATTGAAAAGCGCCGCT-AAAG-GTAAGAGAA
1 TAGCGGCGCTTATGGAAAAGCGCCGCTAAAAGTCTAAG-CAA
* * * ** *
37615920 TTAGCGGCGCTTTTGTAAAAGCGTCGCT-AAAGATCCGAGGAA
1 -TAGCGGCGCTTATGGAAAAGCGCCGCTAAAAG-TCTAAGCAA
* * * * *
37615962 TAGCGGCGCTTTTCGATAAA-CACCACT-AAAGATC-AGATCAA
1 TAGCGGCGCTTATGGA-AAAGCGCCGCTAAAAG-TCTA-AGCAA
* * *
37616003 TAGCGGCGCATATGGAAAAGCACCGCTAAAAGTCTAAGTAA
1 TAGCGGCGCTTATGGAAAAGCGCCGCTAAAAGTCTAAGCAA
* *
37616044 TAGCGGCGCTTATGGAAAATCGCCGGTAAAAGTCTAAGCAA
1 TAGCGGCGCTTATGGAAAAGCGCCGCTAAAAGTCTAAGCAA
* * *
37616085 TTGTGGCGCTTATGGAAAAGCGCCGCGAAAAGTCTAAGCAA
1 TAGCGGCGCTTATGGAAAAGCGCCGCTAAAAGTCTAAGCAA
37616126 TAGCGGCGCTTATGGAAAAGCGCCGCTAAAAGTCTAAGCAA
1 TAGCGGCGCTTATGGAAAAGCGCCGCTAAAAGTCTAAGCAA
*
37616167 TAGCGGCGCTTATGGAAAAGTGCCGCTAAAA
1 TAGCGGCGCTTATGGAAAAGCGCCGCTAAAA
37616198 TTTTTACATT
Statistics
Matches: 235, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
40 3 0.01
41 219 0.93
42 11 0.05
43 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.19
Consensus pattern (41 bp):
TAGCGGCGCTTATGGAAAAGCGCCGCTAAAAGTCTAAGCAA
Found at i:37619850 original size:17 final size:17
Alignment explanation
Indices: 37619825--37619857 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37619815 ATTTAATTTG
*
37619825 TATACTTTAATTTTTTA
1 TATAATTTAATTTTTTA
37619842 TATAATTTAATTTTTT
1 TATAATTTAATTTTTT
37619858 TTAACTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
TATAATTTAATTTTTTA
Found at i:37619983 original size:22 final size:21
Alignment explanation
Indices: 37619955--37620000 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
37619945 AGTTTTTATT
37619955 TTTTTTTAACGGAAATTTAATA
1 TTTTTTTAACGGAAATTTAA-A
*
37619977 TTTTTTTATCGGAAATTTAAA
1 TTTTTTTAACGGAAATTTAAA
37619998 TTT
1 TTT
37620001 GGATAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (21 bp):
TTTTTTTAACGGAAATTTAAA
Found at i:37622605 original size:8 final size:7
Alignment explanation
Indices: 37622569--37622612 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
37622559 AAAATATAGT
37622569 TTTTAAA
1 TTTTAAA
37622576 TTTTAAA
1 TTTTAAA
* *
37622583 TTTTTAT
1 TTTTAAA
37622590 TTTTAAAA
1 TTTT-AAA
37622598 TTTTAAA
1 TTTTAAA
*
37622605 ATTTAAA
1 TTTTAAA
37622612 T
1 T
37622613 CTAATTGTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
7 25 0.83
8 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTTAAA
Found at i:37622609 original size:21 final size:21
Alignment explanation
Indices: 37622557--37622609 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
37622547 TTAAAAAAAA
*
37622557 TTAAAATATAGTTTTTAAATT
1 TTAAAATTTAGTTTTTAAATT
*
37622578 TTAAATTTTTA-TTTTTAAAATT
1 TTAAA-ATTTAGTTTTT-AAATT
37622600 TTAAAATTTA
1 TTAAAATTTA
37622610 AATCTAATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TTAAAATTTAGTTTTTAAATT
Found at i:37623707 original size:15 final size:15
Alignment explanation
Indices: 37623687--37623716 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37623677 TTAGATAAAT
37623687 TGTCAATTTTAATCA
1 TGTCAATTTTAATCA
37623702 TGTCAATTTTAATCA
1 TGTCAATTTTAATCA
37623717 CTCTATCGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (15 bp):
TGTCAATTTTAATCA
Found at i:37635526 original size:24 final size:24
Alignment explanation
Indices: 37635492--37635540 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
37635482 AAAAATATAA
* * *
37635492 TTTTATTATTTTAATAATTTAAAT
1 TTTTATAATTTTAAAAAATTAAAT
37635516 TTTTATAATTTTAAAAAATTAAAT
1 TTTTATAATTTTAAAAAATTAAAT
37635540 T
1 T
37635541 AATAAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTTATAATTTTAAAAAATTAAAT
Found at i:37638271 original size:17 final size:19
Alignment explanation
Indices: 37638239--37638276 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
37638229 GATAATATAA
37638239 ATATAATTTCATTATTTTT
1 ATATAATTTCATTATTTTT
37638258 ATATAATTT-A-TATTTTT
1 ATATAATTTCATTATTTTT
37638275 AT
1 AT
37638277 TATTTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 1 0.05
19 9 0.47
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (19 bp):
ATATAATTTCATTATTTTT
Found at i:37638303 original size:30 final size:31
Alignment explanation
Indices: 37638269--37638345 Score: 97
Period size: 30 Copynumber: 2.5 Consensus size: 31
37638259 TATAATTTAT
37638269 ATTTTTATTATTTTTAAAAAAATAAAAT-AA
1 ATTTTTATTATTTTTAAAAAAATAAAATGAA
* *
37638299 ATTTTTATT-TTTTTGAAAAAATTAAAATGTA
1 ATTTTTATTATTTTT-AAAAAAATAAAATGAA
*
37638330 A-TTTTATTATTATTAA
1 ATTTTTATTATTTTTAA
37638346 TTTTAAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.12
30 30 0.73
31 6 0.15
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (31 bp):
ATTTTTATTATTTTTAAAAAAATAAAATGAA
Found at i:37641735 original size:6 final size:6
Alignment explanation
Indices: 37641724--37641753 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
37641714 AGACAAATGC
37641724 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
37641754 TCCCAACCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (6 bp):
CCCTCT
Found at i:37642252 original size:21 final size:21
Alignment explanation
Indices: 37642223--37642274 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
37642213 ATAATAAAAT
37642223 AATAATAAAATGACAACAAAC
1 AATAATAAAATGACAACAAAC
* * *
37642244 AATATTAAAATGACATCAAAT
1 AATAATAAAATGACAACAAAC
*
37642265 AATAACAAAA
1 AATAATAAAA
37642275 CAACATTGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.65, C:0.12, G:0.04, T:0.19
Consensus pattern (21 bp):
AATAATAAAATGACAACAAAC
Found at i:37647637 original size:33 final size:33
Alignment explanation
Indices: 37647595--37647666 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
37647585 TTATTTGTTG
*
37647595 AAATTTAAATATTA-TTCAAAATTTGTAATATAC-
1 AAATTTAAATATTAGTT-AAAAATTGTAATA-ACT
37647628 AAATTTAAATATTAGTTAAAAATTGTAATAACT
1 AAATTTAAATATTAGTTAAAAATTGTAATAACT
37647661 AAATTT
1 AAATTT
37647667 GGAAAAGACA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
32 2 0.06
33 32 0.89
34 2 0.06
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (33 bp):
AAATTTAAATATTAGTTAAAAATTGTAATAACT
Found at i:37648012 original size:17 final size:17
Alignment explanation
Indices: 37647990--37648037 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
37647980 ATAAGTATGC
37647990 AAATTTTTAAAAAATTA
1 AAATTTTTAAAAAATTA
**
37648007 AAATTTTTCATTAAATTA
1 AAATTTTT-AAAAAATTA
*
37648025 AATTTTTTAAAAA
1 AAATTTTTAAAAA
37648038 TAAATTGTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
AAATTTTTAAAAAATTA
Found at i:37658942 original size:13 final size:13
Alignment explanation
Indices: 37658920--37658953 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
37658910 TTATATATAT
*
37658920 TATAATATTTAGA
1 TATAAAATTTAGA
37658933 TATAAAATTTAGA
1 TATAAAATTTAGA
37658946 TATAAAAT
1 TATAAAAT
37658954 AAAGAAGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (13 bp):
TATAAAATTTAGA
Found at i:37668937 original size:23 final size:23
Alignment explanation
Indices: 37668907--37669117 Score: 170
Period size: 23 Copynumber: 9.1 Consensus size: 23
37668897 ACACTAGCGC
*
37668907 GCTCTCTGTTTAGCAC-GTCTCGT
1 GCTCTCTGTTTAGCACTGTGT-GT
37668930 GCTCTCTGTTTAGCACTGTGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
37668953 GCTCTCTGTTTAGCACTGTGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
*
37668976 GCTCTCTGTTATTAGCACTTTGTGT
1 GCTCTCTG-T-TTAGCACTGTGTGT
* *
37669001 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
* *
37669024 GCT-TACTATTTCGCACT-TCGTGT
1 GCTCT-CTGTTTAGCACTGT-GTGT
* * *
37669047 GC-CTACTGATTT-GCGCTATGTGC
1 GCTCT-CTG-TTTAGCACTGTGTGT
*
37669070 GC-CTACTGATT-GCACTGTGTGT
1 GCTCT-CTGTTTAGCACTGTGTGT
*
37669092 GC-CTACTGGATT-GCACTGTGTGT
1 GCTCT-CT-GTTTAGCACTGTGTGT
37669115 GCT
1 GCT
37669118 TATTGTTTCC
Statistics
Matches: 165, Mismatches: 13, Indels: 19
0.84 0.07 0.10
Matches are distributed among these distances:
22 19 0.12
23 117 0.71
24 8 0.05
25 21 0.13
ACGTcount: A:0.11, C:0.24, G:0.24, T:0.41
Consensus pattern (23 bp):
GCTCTCTGTTTAGCACTGTGTGT
Found at i:37672307 original size:62 final size:60
Alignment explanation
Indices: 37672198--37672526 Score: 287
Period size: 61 Copynumber: 5.4 Consensus size: 60
37672188 GGCCAACACC
* *
37672198 AAAAATTGGATTTTTTTATCAGATAAAAAGGTGGTGTCGACCAATGC-ATGACCAACATTAAA
1 AAAAATTTGATTTTTTTATCAGATAAAAAGGTGGTGTCG-CC-ATGCAATGACCAACA-CAAA
* * * * * *
37672260 AAAAATTTGAATTTGTTGTCAGATAAAAAAGGTAGTGCCAGCCATGCAATGGA-CTACAC-AA
1 AAAAATTTGATTTTTTTATCAGAT-AAAAAGGTGGTGTC-GCCATGCAAT-GACCAACACAAA
* * * * *
37672321 AAAAATTTGATTTTTCTTATCAAATAAAAAGATGGTGTCGGCAATGCAATGGCCAACA-TAA
1 AAAAATTTGATTTTT-TTATCAGATAAAAAGGTGGTGTC-GCCATGCAATGACCAACACAAA
* * * *
37672382 AAAATTTTGATTTTTTTATCAGATAAAAAGGTGGTGTCGATCAATGC-ATGACCAATACCGAA
1 AAAAATTTGATTTTTTTATCAGATAAAAAGGTGGTGTCG--CCATGCAATGACCAACA-CAAA
* * * *
37672444 AAAAA-TTAAATTTTTTGTCAGATAAAAAAGGTGGTGTCGACCATGCAATGACCAACACCAA
1 AAAAATTTGATTTTTTTATCAGAT-AAAAAGGTGGTGTCG-CCATGCAATGACCAACACAAA
*
37672505 AAAAATATGA--TTTTTATCAGAT
1 AAAAATTTGATTTTTTTATCAGAT
37672527 CTACACCAAA
Statistics
Matches: 217, Mismatches: 36, Indels: 30
0.77 0.13 0.11
Matches are distributed among these distances:
59 1 0.00
60 41 0.19
61 89 0.41
62 63 0.29
63 20 0.09
64 3 0.01
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (60 bp):
AAAAATTTGATTTTTTTATCAGATAAAAAGGTGGTGTCGCCATGCAATGACCAACACAAA
Found at i:37680213 original size:33 final size:33
Alignment explanation
Indices: 37680171--37680242 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
37680161 TTATTTGTTG
*
37680171 AAATTTAAATATTA-TTCAAAATTTGTAATATAC-
1 AAATTTAAATATTAGTT-AAAAATTGTAATA-ACT
37680204 AAATTTAAATATTAGTTAAAAATTGTAATAACT
1 AAATTTAAATATTAGTTAAAAATTGTAATAACT
37680237 AAATTT
1 AAATTT
37680243 GGAAAAGACA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
32 2 0.06
33 32 0.89
34 2 0.06
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (33 bp):
AAATTTAAATATTAGTTAAAAATTGTAATAACT
Found at i:37680582 original size:17 final size:16
Alignment explanation
Indices: 37680560--37680609 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
37680550 ATAAGTATGC
37680560 AAATTTTTAAAAAATT
1 AAATTTTTAAAAAATT
**
37680576 AAAATTTTTCATTAAATT
1 -AAATTTTT-AAAAAATT
*
37680594 AAATTTTAAAAAAATT
1 AAATTTTTAAAAAATT
37680610 TGTTAGTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 6 0.22
17 15 0.56
18 6 0.22
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATTTTTAAAAAATT
Found at i:37689598 original size:13 final size:13
Alignment explanation
Indices: 37689576--37689609 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
37689566 TTATATATAT
*
37689576 TATAATATTTAGA
1 TATAAAATTTAGA
37689589 TATAAAATTTAGA
1 TATAAAATTTAGA
37689602 TATAAAAT
1 TATAAAAT
37689610 AAAGAAGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (13 bp):
TATAAAATTTAGA
Found at i:37700406 original size:17 final size:19
Alignment explanation
Indices: 37700374--37700411 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
37700364 GATAATATAA
37700374 ATATAATTTCATTATTTTT
1 ATATAATTTCATTATTTTT
37700393 ATATAATTT-A-TATTTTT
1 ATATAATTTCATTATTTTT
37700410 AT
1 AT
37700412 TATTTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 1 0.05
19 9 0.47
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (19 bp):
ATATAATTTCATTATTTTT
Found at i:37700444 original size:32 final size:33
Alignment explanation
Indices: 37700405--37700489 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 33
37700395 ATAATTTATA
37700405 TTTTTATTATTTTTAAAAAAAATAAAAT-AAAT
1 TTTTTATTATTTTTAAAAAAAATAAAATGAAAT
* * *
37700437 TTTTTATT-TTTTTGAAAAAATTAAAATGTAAT
1 TTTTTATTATTTTTAAAAAAAATAAAATGAAAT
37700469 TTTATTATTATTAATTTAAAA
1 TTT-TTATTATT--TTTAAAA
37700490 TTTTATAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
31 17 0.39
32 14 0.32
33 5 0.11
34 2 0.05
36 6 0.14
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (33 bp):
TTTTTATTATTTTTAAAAAAAATAAAATGAAAT
Found at i:37703864 original size:6 final size:6
Alignment explanation
Indices: 37703853--37703888 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
37703843 AGACAAATGC
37703853 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
37703889 TCCCAACCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (6 bp):
CCCTCT
Found at i:37704388 original size:21 final size:21
Alignment explanation
Indices: 37704359--37704410 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
37704349 ATAATAAAAT
37704359 AATAATAAAATGACAACAAAC
1 AATAATAAAATGACAACAAAC
* * *
37704380 AATATTAAAATGACATCAAAT
1 AATAATAAAATGACAACAAAC
*
37704401 AATAACAAAA
1 AATAATAAAA
37704411 CAACATTGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.65, C:0.12, G:0.04, T:0.19
Consensus pattern (21 bp):
AATAATAAAATGACAACAAAC
Found at i:37709764 original size:33 final size:33
Alignment explanation
Indices: 37709722--37709793 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
37709712 TTATTTGTTG
*
37709722 AAATTTAAATATTA-TTCAAAATTTGTAATATAC-
1 AAATTTAAATATTAGTT-AAAAATTGTAATA-ACT
37709755 AAATTTAAATATTAGTTAAAAATTGTAATAACT
1 AAATTTAAATATTAGTTAAAAATTGTAATAACT
37709788 AAATTT
1 AAATTT
37709794 GGAAAAGACA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
32 2 0.06
33 32 0.89
34 2 0.06
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (33 bp):
AAATTTAAATATTAGTTAAAAATTGTAATAACT
Found at i:37710134 original size:17 final size:16
Alignment explanation
Indices: 37710112--37710161 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
37710102 ATAAGTATGC
37710112 AAATTTTTAAAAAATT
1 AAATTTTTAAAAAATT
**
37710128 AAAATTTTTCATTAAATT
1 -AAATTTTT-AAAAAATT
*
37710146 AAATTTTAAAAAAATT
1 AAATTTTTAAAAAATT
37710162 TGTTAGTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 6 0.22
17 15 0.56
18 6 0.22
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATTTTTAAAAAATT
Found at i:37718512 original size:13 final size:13
Alignment explanation
Indices: 37718490--37718523 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
37718480 TTATATATAT
*
37718490 TATAATATTTAGA
1 TATAAAATTTAGA
37718503 TATAAAATTTAGA
1 TATAAAATTTAGA
37718516 TATAAAAT
1 TATAAAAT
37718524 AAAGAAGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (13 bp):
TATAAAATTTAGA
Found at i:37728441 original size:25 final size:23
Alignment explanation
Indices: 37728389--37728485 Score: 124
Period size: 23 Copynumber: 4.1 Consensus size: 23
37728379 ACACTAGCGC
*
37728389 GCTCTCTGTTTAGCAC-GTCTCGT
1 GCTCTCTGTTTAGCACTGTGT-GT
37728412 GCTCTCTGTTTAGCACTGTGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
*
37728435 GCTCTCTGTTATTAGCACTTTGTGT
1 GCTCTCTG-T-TTAGCACTGTGTGT
* *
37728460 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
37728483 GCT
1 GCT
37728486 TACTATTTCA
Statistics
Matches: 68, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
23 43 0.63
24 4 0.06
25 21 0.31
ACGTcount: A:0.10, C:0.24, G:0.23, T:0.43
Consensus pattern (23 bp):
GCTCTCTGTTTAGCACTGTGTGT
Found at i:37728566 original size:23 final size:22
Alignment explanation
Indices: 37728424--37728575 Score: 105
Period size: 23 Copynumber: 6.6 Consensus size: 22
37728414 TCTCTGTTTA
37728424 GCACTGTGTGTGCTCT-CTGTTATT
1 GCACTGTGTGTGC-CTACTG--ATT
*
37728448 AGCACTTTGTGTGCTCT-CTGATT
1 -GCACTGTGTGTGC-CTACTGATT
* *
37728471 AGCACTTTGTGTGCTTACT-ATTT
1 -GCACTGTGTGTGCCTACTGA-TT
*
37728494 CACACT-TCGTGTGCCTACTGATTT
1 -GCACTGT-GTGTGCCTACTGA-TT
* * * *
37728518 GCGCTATTTGCGCCTACTGATT
1 GCACTGTGTGTGCCTACTGATT
37728540 GCACTGTGTGTGCCTACTGGATT
1 GCACTGTGTGTGCCTACT-GATT
37728563 GCACTGTGTGTGC
1 GCACTGTGTGTGC
37728576 TTATTGTTTC
Statistics
Matches: 108, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
22 19 0.18
23 66 0.61
24 5 0.05
25 18 0.17
ACGTcount: A:0.13, C:0.23, G:0.24, T:0.40
Consensus pattern (22 bp):
GCACTGTGTGTGCCTACTGATT
Found at i:37731699 original size:60 final size:58
Alignment explanation
Indices: 37731511--37731985 Score: 353
Period size: 61 Copynumber: 7.8 Consensus size: 58
37731501 ATTTTAAGGG
* * * * *
37731511 AAAGTTGGTGTTGGTCAATGCATGACCAACACAAAAAAATT-A-TTTTTTATCTGATAA
1 AAAGGTGGTGTCGG-CAATGCATGGCCAACACAAAAAATTTGATTTTTTTATCAGATAA
* * * *
37731568 AAATGGTGGTGTCAGCCAATGCATGGCCAACGCCAAAAAATTTTGA-TGTTTTATTAGATAAA
1 AAA-GGTGGTGTC-GGCAATGCATGGCCAAC-ACAAAAAA-TTTGATTTTTTTATCAGAT-AA
* * * *
37731630 AAAGGTGGTGTTGGCAAAGCATTGGCCAACACCAAAAATTGGATTTTTTTTATCAGATAA
1 AAAGGTGGTGTCGGCAATGCA-TGGCCAACACAAAAAATTTGA-TTTTTTTATCAGATAA
* * * * * * *
37731690 AAAGGTGGTGTCGACCAATGCATGACCAACATTAAAAAAAAATTGAATTTGTTGTCAGATAAA
1 AAAGGTGGTGTCG-GCAATGCATGGCCAAC---ACAAAAAATTTGATTTTTTTATCAGAT-AA
* * * * * * *
37731753 AAAGGTAGTGCCAGCCATGCAATGGACTACACAAAAAAATTTGATTTTTCTTATCAAATAA
1 AAAGGTGGTGTCGGCAATGC-ATGGCCAACAC-AAAAAATTTGATTTTT-TTATCAGATAA
* *
37731814 AAAGATGGTGTCGGCAATGCAATGGCCAACATAAAAAATTTTGATTTTTTTATCAGATAA
1 AAAGGTGGTGTCGGCAATGC-ATGGCCAACACAAAAAA-TTTGATTTTTTTATCAGATAA
* * * * * * *
37731874 AAAGGTGGTGTCGATCAATGCATGACCAATACCGAAAAAAATTAAATTTTTTGTCAGATAAA
1 AAAGGTGGTGTCG-GCAATGCATGGCCAACA-C-AAAAAATTTGATTTTTTTATCAGAT-AA
* * *
37731936 AAAGGTGGTGTCGACCATGCAATGGCCAACACCAAAAAAATATGATTTTT
1 AAAGGTGGTGTCGGCAATGC-ATGGCCAACA-C-AAAAAATTTGATTTTT
37731986 ATTAGATCTA
Statistics
Matches: 326, Mismatches: 69, Indels: 41
0.75 0.16 0.09
Matches are distributed among these distances:
57 3 0.01
58 21 0.06
59 12 0.04
60 73 0.22
61 119 0.37
62 71 0.22
63 27 0.08
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.29
Consensus pattern (58 bp):
AAAGGTGGTGTCGGCAATGCATGGCCAACACAAAAAATTTGATTTTTTTATCAGATAA
Found at i:37731793 original size:184 final size:180
Alignment explanation
Indices: 37731526--37731992 Score: 550
Period size: 184 Copynumber: 2.6 Consensus size: 180
37731516 TGGTGTTGGT
* * * *
37731526 CAATGCATGACCAAC-ACAAAAAAATT-ATTTTTTATCTGATAAAAATGGTGGTGTCAGCCAATG
1 CAATGCATGACCAACAAAAAAAAAATTAATTTTTTGTCAGATAAAAAAGGTGGTGTCAGCC-ATG
* * * * *
37731589 C-ATGGCCAACGCCAAAAAATTTTGATGTTTTATTAGATA-AAAAAGGTGGTGTTGGCAAAGCAT
65 CAATGGCCAAC-ACAAAAAAATTTGAT-TTTTATTAGATATAAAAAGATGGTGTCGGCAAAGCAA
*
37731652 TGGCCAACACCAAAAA-TTGGATTTTTTTTATCAGATAAAAAGGTGGTGTCGAC
128 TGGCCAACACAAAAAATTTGGA-TTTTTTTATCAGATAAAAAGGTGGTGTCGAC
* * *
37731705 CAATGCATGACCAACATTAAAAAAAAATTGAATTTGTTGTCAGATAAAAAAGGTAGTGCCAGCCA
1 CAATGCATGACCAACA--AAAAAAAAATT-AATTTTTTGTCAGATAAAAAAGGTGGTGTCAGCCA
* * * * * *
37731770 TGCAATGGACTACACAAAAAAATTTGATTTTTCTTATCAAATAAAAAGATGGTGTCGGCAATGCA
63 TGCAATGGCCAACACAAAAAAATTTGATTTTTATTA-GATATAAAAAGATGGTGTCGGCAAAGCA
* * *
37731835 ATGGCCAACATAAAAAATTTTGATTTTTTTATCAGATAAAAAGGTGGTGTCGAT
127 ATGGCCAACACAAAAAATTTGGATTTTTTTATCAGATAAAAAGGTGGTGTCGAC
* **
37731889 CAATGCATGACCAATACCGAAAAAAATTAAATTTTTTGTCAGATAAAAAAGGTGGTGTC-GACCA
1 CAATGCATGACCAACA-AAAAAAAAATT-AATTTTTTGTCAGATAAAAAAGGTGGTGTCAG-CCA
*
37731953 TGCAATGGCCAACACCAAAAAAATATGATTTTTATTAGAT
63 TGCAATGGCCAACA-CAAAAAAATTTGATTTTTATTAGAT
37731993 CTACACCAAA
Statistics
Matches: 241, Mismatches: 36, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
179 15 0.06
182 18 0.07
183 71 0.29
184 133 0.55
185 4 0.02
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (180 bp):
CAATGCATGACCAACAAAAAAAAAATTAATTTTTTGTCAGATAAAAAAGGTGGTGTCAGCCATGC
AATGGCCAACACAAAAAAATTTGATTTTTATTAGATATAAAAAGATGGTGTCGGCAAAGCAATGG
CCAACACAAAAAATTTGGATTTTTTTATCAGATAAAAAGGTGGTGTCGAC
Found at i:37737681 original size:15 final size:16
Alignment explanation
Indices: 37737651--37737689 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
37737641 TAATAAAAAT
37737651 ATAATTTTATTATTTTA
1 ATAA-TTTATTATTTTA
*
37737668 ATAATTTA-TATTTTT
1 ATAATTTATTATTTTA
37737683 ATAATTT
1 ATAATTT
37737690 TTAAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 4 0.19
17 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATAATTTATTATTTTA
Found at i:37740300 original size:17 final size:19
Alignment explanation
Indices: 37740268--37740305 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
37740258 GATAATATAA
37740268 ATATAATTTCATTATTTTT
1 ATATAATTTCATTATTTTT
37740287 ATATAATTT-A-TATTTTT
1 ATATAATTTCATTATTTTT
37740304 AT
1 AT
37740306 TTTTTTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 1 0.05
19 9 0.47
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (19 bp):
ATATAATTTCATTATTTTT
Found at i:37741626 original size:21 final size:21
Alignment explanation
Indices: 37741597--37741648 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
37741587 ATAATAAAAT
37741597 AATAATAAAATGACAACAAAC
1 AATAATAAAATGACAACAAAC
* * *
37741618 AATATTAAAATGACATCAAAT
1 AATAATAAAATGACAACAAAC
*
37741639 AATAACAAAA
1 AATAATAAAA
37741649 CAACATTGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.65, C:0.12, G:0.04, T:0.19
Consensus pattern (21 bp):
AATAATAAAATGACAACAAAC
Found at i:37750441 original size:37 final size:36
Alignment explanation
Indices: 37750396--37750465 Score: 122
Period size: 37 Copynumber: 1.9 Consensus size: 36
37750386 GCTGACTCGT
37750396 TCCATGTCGCTGCATTGTTGCCAACATTCAACATCC
1 TCCATGTCGCTGCATTGTTGCCAACATTCAACATCC
*
37750432 TCCATTGTCGCTGCATTGTTGCCAACATTTAACA
1 TCCA-TGTCGCTGCATTGTTGCCAACATTCAACA
37750466 GAATGTAGCA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 4 0.12
37 28 0.88
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (36 bp):
TCCATGTCGCTGCATTGTTGCCAACATTCAACATCC
Found at i:37751129 original size:131 final size:132
Alignment explanation
Indices: 37750962--37751224 Score: 476
Period size: 131 Copynumber: 2.0 Consensus size: 132
37750952 CCCAAAAAAA
37750962 AAAGTATAGTTTCTTTTTTAGTTAAACAATTTCATGAGCCAAAACCCATTCCTTCAACAACCCAA
1 AAAGTATAGTTTCTTTTTTAGTTAAACAATTTCATGAGCC-AAACCCATTCCTTCAACAACCCAA
37751027 TCACCGACTAAGC-TTGATCTAGGTTCTTTTAGTATATCAGCTAATAATGTGATGTGAGAGGTTT
65 TCACCGACTAAGCTTTGATCTAGGTTCTTTTAGTATATCAGCTAATAATGTGATGTGAGAGGTTT
37751091 TGG
130 TGG
*
37751094 AAAGTATAGTTTC-TTTTTAGTTAAACAATTTCATGAGCCAAACCCATTCCTTCAACAACTCAAT
1 AAAGTATAGTTTCTTTTTTAGTTAAACAATTTCATGAGCCAAACCCATTCCTTCAACAACCCAAT
* *
37751158 CACCGACTAAGCTTTGATCTGGGTTCTTTTAGTATATCAGTTAATAATGTGATGTGAGAGGTTTT
66 CACCGACTAAGCTTTGATCTAGGTTCTTTTAGTATATCAGCTAATAATGTGATGTGAGAGGTTTT
37751223 GG
131 GG
37751225 GTTTTGGTTC
Statistics
Matches: 127, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
130 36 0.28
131 78 0.61
132 13 0.10
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.36
Consensus pattern (132 bp):
AAAGTATAGTTTCTTTTTTAGTTAAACAATTTCATGAGCCAAACCCATTCCTTCAACAACCCAAT
CACCGACTAAGCTTTGATCTAGGTTCTTTTAGTATATCAGCTAATAATGTGATGTGAGAGGTTTT
GG
Found at i:37751699 original size:18 final size:19
Alignment explanation
Indices: 37751671--37751710 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
37751661 GGGTAAATAT
37751671 TTTATTGTTTTTAATTTAA
1 TTTATTGTTTTTAATTTAA
*
37751690 TTTA-TGTTTTTACTTTAA
1 TTTATTGTTTTTAATTTAA
37751708 TTT
1 TTT
37751711 TTTTTGCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTATTGTTTTTAATTTAA
Found at i:37754515 original size:26 final size:27
Alignment explanation
Indices: 37754484--37754535 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
37754474 TTTTATGATA
37754484 ATATAA-ATATAATTTCATTATTTTTT
1 ATATAATATATAATTTCATTATTTTTT
* * *
37754510 ATATAATTTATATTTTTATTATTTTT
1 ATATAATATATAATTTCATTATTTTT
37754536 AAAAAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (27 bp):
ATATAATATATAATTTCATTATTTTTT
Found at i:37754531 original size:20 final size:20
Alignment explanation
Indices: 37754490--37754526 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37754480 GATAATATAA
37754490 ATATAATTTCATTATTTTTT
1 ATATAATTTCATTATTTTTT
37754510 ATATAATTT-A-TATTTTT
1 ATATAATTTCATTATTTTT
37754527 ATTATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 1 0.06
20 9 0.53
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (20 bp):
ATATAATTTCATTATTTTTT
Found at i:37754576 original size:29 final size:31
Alignment explanation
Indices: 37754521--37754602 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 31
37754511 TATAATTTAT
37754521 ATTTTTATTATTTTTAAAAAAAATAAAATAA
1 ATTTTTATTATTTTTAAAAAAAATAAAATAA
* * *
37754552 ATTTTT-TT-TTTTTGAAAGAATTAAAATGTAA
1 ATTTTTATTATTTTTAAAAAAAATAAAA--TAA
*
37754583 TTTTATTATTATTATTTAAA
1 ATTT-TTATTATT-TTTAAA
37754603 TTTTATAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
29 15 0.38
30 2 0.05
31 12 0.30
32 2 0.05
33 2 0.05
34 2 0.05
35 5 0.12
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (31 bp):
ATTTTTATTATTTTTAAAAAAAATAAAATAA
Found at i:37758560 original size:21 final size:21
Alignment explanation
Indices: 37758531--37758582 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
37758521 ATAATAAAAT
37758531 AATAATAAAATGACAACAAAC
1 AATAATAAAATGACAACAAAC
* * *
37758552 AATATTAAAATGACATCAAAT
1 AATAATAAAATGACAACAAAC
*
37758573 AATAACAAAA
1 AATAATAAAA
37758583 CAACATTGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.65, C:0.12, G:0.04, T:0.19
Consensus pattern (21 bp):
AATAATAAAATGACAACAAAC
Found at i:37760884 original size:836 final size:836
Alignment explanation
Indices: 37759272--37760946 Score: 3170
Period size: 836 Copynumber: 2.0 Consensus size: 836
37759262 CAAACACAGC
37759272 CAATGAGACAACACTCAATTGATCCCTAAATCGCTGAAAACTCCTAGCAGTCGGAGGCTTAGTAA
1 CAATGAGACAACACTCAATTGATCCCTAAATCGCTGAAAACTCCTAGCAGTCGGAGGCTTAGTAA
37759337 GTATATCAGCAACTTGATCACTCCCAGGAACAAAATTAACCTGCAAGAGCCCTTGTAACACCTTA
66 GTATATCAGCAACTTGATCACTCCCAGGAACAAAATTAACCTGCAAGAGCCCTTGTAACACCTTA
*
37759402 TCACGTACAAAATGAACATCAATCTCAATGTGCTTTGCTCGGGCATGGAGAACTGGATTTGCTGC
131 TCACGCACAAAATGAACATCAATCTCAATGTGCTTTGCTCGGGCATGGAGAACTGGATTTGCTGC
37759467 CAATAAAACAATACTAACATTATCACACCAAATCGTTGGCACCCCTGCAGACTTCACTCCAATCT
196 CAATAAAACAATACTAACATTATCACACCAAATCGTTGGCACCCCTGCAGACTTCACTCCAATCT
37759532 CTTGTAGTAATGACTGAAACAAAACCAGCTCCGATGTAGCATTAGTTAGGCTTTGATATTCAGCT
261 CTTGTAGTAATGACTGAAACAAAACCAGCTCCGATGTAGCATTAGTTAGGCTTTGATATTCAGCT
37759597 TCAGTTGTCGACCTAGACACCATTGACTGCTTCTTTGAAGACCACCCAACTAGATTTGCTCCAAG
326 TCAGTTGTCGACCTAGACACCATTGACTGCTTCTTTGAAGACCACCCAACTAGATTTGCTCCAAG
37759662 GTACATGTAGTAACCAGAAGTTGATTTCCTATCTTCAAGTGAACTTGCCCAATCAGCATCAAAGA
391 GTACATGTAGTAACCAGAAGTTGATTTCCTATCTTCAAGTGAACTTGCCCAATCAGCATCAAAGA
* *
37759727 ATCCTGTCAAGGTAAGATCAGTTGGTTGAAACCTCAACCCAAAGTCAGCGGTTCCTTTCACATAT
456 ATCCTGTCAAGGTAAGATCAGATGGTTGAAACCTCAACCCAAAGTCAGCAGTTCCTTTCACATAT
*
37759792 CTGAGTATTCTTTTAACAGTACTACAATGTTTATCATAGGGAGAGTGCATGCATTGACTGACCTT
521 CTGAGTATTCTTTTAACAGCACTACAATGTTTATCATAGGGAGAGTGCATGCATTGACTGACCTT
* * * * *
37759857 ATTGACAGCAAAAGAAATGTCAGGTTGAGTTAAACAAAGATATTGCAACCCTCCTACAATTTGCC
586 ATTGACAGCAAAAGAAATGTCAGGTCGAGTCAAACAAAGATACTACAACACTCCTACAATTTGCC
37759922 TATATAACCCCCATCTGTCAATTTAGCTCTAGTGAAGGATGATAAAGTAGAACCAACAACCATTG
651 TATATAACCCCCATCTGTCAATTTAGCTCTAGTGAAGGATGATAAAGTAGAACCAACAACCATTG
37759987 GTATGTCTACAGGTTTAGCACTCTCCATAGTTGCTTTCTCTAGTAACTCACGAGCATACTTTTGC
716 GTATGTCTACAGGTTTAGCACTCTCCATAGTTGCTTTCTCTAGTAACTCACGAGCATACTTTTGC
37760052 TGTGAGACATGAACACCATGTTCTCCTCTGTTGACCTCAAGACCCAAAAAAACACT
781 TGTGAGACATGAACACCATGTTCTCCTCTGTTGACCTCAAGACCCAAAAAAACACT
*
37760108 CAATGAGACAACACTCAATTGATCCCTAAATCGTTGAAAACTCCTAGCAGTCGGAGGCTTAGTAA
1 CAATGAGACAACACTCAATTGATCCCTAAATCGCTGAAAACTCCTAGCAGTCGGAGGCTTAGTAA
37760173 GTATATCAGCAACTTGATCACTCCCAGGAACAAAATTAACCTGCAAGAGCCCTTGTAACACCTTA
66 GTATATCAGCAACTTGATCACTCCCAGGAACAAAATTAACCTGCAAGAGCCCTTGTAACACCTTA
37760238 TCACGCACAAAATGAACATCAATCTCAATGTGCTTTGCTCGGGCATGGAGAACTGGATTTGCTGC
131 TCACGCACAAAATGAACATCAATCTCAATGTGCTTTGCTCGGGCATGGAGAACTGGATTTGCTGC
37760303 CAATAAAACAATACTAACATTATCACACCAAATCGTTGGCACCCCTGCAGACTTCACTCCAATCT
196 CAATAAAACAATACTAACATTATCACACCAAATCGTTGGCACCCCTGCAGACTTCACTCCAATCT
*
37760368 CTTGTAGTAATGACTGAAACAAAGCCAGCTCCGATGTAGCATTAGTTAGGCTTTGATATTCAGCT
261 CTTGTAGTAATGACTGAAACAAAACCAGCTCCGATGTAGCATTAGTTAGGCTTTGATATTCAGCT
*
37760433 TCAGTTGTCGACCTAGGCACCATTGACTGCTTCTTTGAAGACCACCCAACTAGATTTGCTCCAAG
326 TCAGTTGTCGACCTAGACACCATTGACTGCTTCTTTGAAGACCACCCAACTAGATTTGCTCCAAG
37760498 GTACATGTAGTAACCAGAAGTTGATTTCCTATCTTCAAGTGAACTTGCCCAATCAGCATCAAAGA
391 GTACATGTAGTAACCAGAAGTTGATTTCCTATCTTCAAGTGAACTTGCCCAATCAGCATCAAAGA
37760563 ATCCTGTCAAGGTAAGATCAGATGGTTGAAACCTCAACCCAAAGTCAGCAGTTCCTTTCACATAT
456 ATCCTGTCAAGGTAAGATCAGATGGTTGAAACCTCAACCCAAAGTCAGCAGTTCCTTTCACATAT
* *
37760628 CTGAGTATTCTTTTAACAGCACTACAATGTTTATCATAGGGAGAGTGCATGTATTGACTGACTTT
521 CTGAGTATTCTTTTAACAGCACTACAATGTTTATCATAGGGAGAGTGCATGCATTGACTGACCTT
*
37760693 ATTGACAGCAAAAGAAATGTTAGGTCGAGTCAAACAAAGATACTACAACACTCCTACAATTTGCC
586 ATTGACAGCAAAAGAAATGTCAGGTCGAGTCAAACAAAGATACTACAACACTCCTACAATTTGCC
* *
37760758 TATATAACCCCCATCTGTCAATTTAGCTCTTGTGAAGGATGATAACGTAGAACCAACAACCATTG
651 TATATAACCCCCATCTGTCAATTTAGCTCTAGTGAAGGATGATAAAGTAGAACCAACAACCATTG
* *
37760823 GTGTGTCTACAGGTTTAGCACTCTCCATATTTGCTTTCTCTAGTAACTCACGAGCATACTTTTGC
716 GTATGTCTACAGGTTTAGCACTCTCCATAGTTGCTTTCTCTAGTAACTCACGAGCATACTTTTGC
*
37760888 TGTGAGACATGAACACCATGTTCTCCTTTGTTGACCTCAAGACCCAAAAAAACACT
781 TGTGAGACATGAACACCATGTTCTCCTCTGTTGACCTCAAGACCCAAAAAAACACT
37760944 CAA
1 CAA
37760947 ATCTCCAACA
Statistics
Matches: 819, Mismatches: 20, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
836 819 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (836 bp):
CAATGAGACAACACTCAATTGATCCCTAAATCGCTGAAAACTCCTAGCAGTCGGAGGCTTAGTAA
GTATATCAGCAACTTGATCACTCCCAGGAACAAAATTAACCTGCAAGAGCCCTTGTAACACCTTA
TCACGCACAAAATGAACATCAATCTCAATGTGCTTTGCTCGGGCATGGAGAACTGGATTTGCTGC
CAATAAAACAATACTAACATTATCACACCAAATCGTTGGCACCCCTGCAGACTTCACTCCAATCT
CTTGTAGTAATGACTGAAACAAAACCAGCTCCGATGTAGCATTAGTTAGGCTTTGATATTCAGCT
TCAGTTGTCGACCTAGACACCATTGACTGCTTCTTTGAAGACCACCCAACTAGATTTGCTCCAAG
GTACATGTAGTAACCAGAAGTTGATTTCCTATCTTCAAGTGAACTTGCCCAATCAGCATCAAAGA
ATCCTGTCAAGGTAAGATCAGATGGTTGAAACCTCAACCCAAAGTCAGCAGTTCCTTTCACATAT
CTGAGTATTCTTTTAACAGCACTACAATGTTTATCATAGGGAGAGTGCATGCATTGACTGACCTT
ATTGACAGCAAAAGAAATGTCAGGTCGAGTCAAACAAAGATACTACAACACTCCTACAATTTGCC
TATATAACCCCCATCTGTCAATTTAGCTCTAGTGAAGGATGATAAAGTAGAACCAACAACCATTG
GTATGTCTACAGGTTTAGCACTCTCCATAGTTGCTTTCTCTAGTAACTCACGAGCATACTTTTGC
TGTGAGACATGAACACCATGTTCTCCTCTGTTGACCTCAAGACCCAAAAAAACACT
Found at i:37767369 original size:37 final size:36
Alignment explanation
Indices: 37767324--37767393 Score: 122
Period size: 37 Copynumber: 1.9 Consensus size: 36
37767314 GCTGACTCGT
37767324 TCCATGTCGCTGCATTGTTGCCAACATTCAACATCC
1 TCCATGTCGCTGCATTGTTGCCAACATTCAACATCC
*
37767360 TCCATTGTCGCTGCATTGTTGCCAACATTTAACA
1 TCCA-TGTCGCTGCATTGTTGCCAACATTCAACA
37767394 GAATGTAGCA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 4 0.12
37 28 0.88
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (36 bp):
TCCATGTCGCTGCATTGTTGCCAACATTCAACATCC
Found at i:37768151 original size:134 final size:133
Alignment explanation
Indices: 37767887--37768153 Score: 498
Period size: 133 Copynumber: 2.0 Consensus size: 133
37767877 CCCCAAAAAA
37767887 AAAGTATAGTTTCTTTTTTAGTTAAACAATTTCATGAGCCAAAACCCATTCCTTCAACAACCCAA
1 AAAGTATAGTTTCTTTTTTAGTTAAACAATTTCATGAGCCAAAACCCATTCCTTCAACAACCCAA
37767952 TCACCGACTAAGCTTGATCTAGGTTTCTTTTAGTATATCAGCTAATAATGTGATGTGAGAGGTTT
66 TCACCGACTAAGCTTGATCTAGGTTTCTTTTAGTATATCAGCTAATAATGTGATGTGAGAGGTTT
37768017 TGG
131 TGG
*
37768020 AAAGTATAGTTTCTTTTTTAGTTAAACAATTTCATGAGCCAAAACCCATTCCTTCAACAACTCAA
1 AAAGTATAGTTTCTTTTTTAGTTAAACAATTTCATGAGCCAAAACCCATTCCTTCAACAACCCAA
* *
37768085 TCACCGACTAAGCTTTGATCTGGGTTTCTTTTAGTATATCAGTTAATAATGTGATGTGAGAGGTT
66 TCACCGACTAAGC-TTGATCTAGGTTTCTTTTAGTATATCAGCTAATAATGTGATGTGAGAGGTT
37768150 TTGG
130 TTGG
37768154 GTTTTGGTTC
Statistics
Matches: 130, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
133 77 0.59
134 53 0.41
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.36
Consensus pattern (133 bp):
AAAGTATAGTTTCTTTTTTAGTTAAACAATTTCATGAGCCAAAACCCATTCCTTCAACAACCCAA
TCACCGACTAAGCTTGATCTAGGTTTCTTTTAGTATATCAGCTAATAATGTGATGTGAGAGGTTT
TGG
Found at i:37768631 original size:18 final size:19
Alignment explanation
Indices: 37768603--37768642 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
37768593 GGGTAAATAT
37768603 TTTATTGTTTTTAATTTAA
1 TTTATTGTTTTTAATTTAA
*
37768622 TTTA-TGTTTTTACTTTAA
1 TTTATTGTTTTTAATTTAA
37768640 TTT
1 TTT
37768643 TTTTTGCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTATTGTTTTTAATTTAA
Found at i:37781218 original size:60 final size:59
Alignment explanation
Indices: 37781127--37781522 Score: 284
Period size: 60 Copynumber: 6.5 Consensus size: 59
37781117 AAAAAAAAAA
* * * * *
37781127 TTTATCTGATAATAATGGTGTTGTCGGCCAATGCATGACCAACACCCAAAAAAA-ATGATTT
1 TTTATCAGATAA-AAAGGTGATGTCGGCCAATGCATGACCAACA--TAAAAAAATTTGATTT
37781188 TTTATCAGATAAAAAGGTGATGTCGGCCAATGCATGACCAACACTAAAAAAAATTTGAATTT
1 TTTATCAGATAAAAAGGTGATGTCGGCCAATGCATGACCAACA-T-AAAAAAATTTG-ATTT
* * * * * *
37781250 TTTGTTAGATAAAAAAGGT-AGTGCCGACC-ATGCAATGGA-CTACACAAAAAAATTTGATTTTT
1 TTTATCAGAT-AAAAAGGTGA-TGTCGGCCAATGC-AT-GACCAACATAAAAAAATTTGA--TTT
* ** * *
37781312 TTTATCAAATAAAAATAT-AGTGTCAGCC-ATGGAATGACCAACATAAAAAAATTTTGATTT
1 TTTATCAGATAAAAAGGTGA-TGTCGGCCAAT-GCATGACCAACATAAAAAAA-TTTGATTT
* * * * **
37781372 TTTATCAGATAAAAAGATGGTGTCGGTCAATGCATGACCAATATCGAAAAAAATTAAATTTT
1 TTTATCAGATAAAAAGGTGATGTCGGCCAATGCATGACCAACAT--AAAAAAATTTGA-TTT
* * * ** * * *
37781434 TTTGTCAGATAAAAAAGGTGGTGTCGACC-ATAAAATGGCCTACATAAAAAAATTTAATTT
1 TTTATCAGAT-AAAAAGGTGATGTCGGCCAAT-GCATGACCAACATAAAAAAATTTGATTT
*
37781494 TTTATCAGATAAAAAGGTGGTGTCGGCCA
1 TTTATCAGATAAAAAGGTGATGTCGGCCA
37781523 TATAATGGCC
Statistics
Matches: 272, Mismatches: 43, Indels: 41
0.76 0.12 0.12
Matches are distributed among these distances:
59 18 0.07
60 87 0.32
61 68 0.25
62 54 0.20
63 43 0.16
64 2 0.01
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (59 bp):
TTTATCAGATAAAAAGGTGATGTCGGCCAATGCATGACCAACATAAAAAAATTTGATTT
Found at i:37781405 original size:122 final size:121
Alignment explanation
Indices: 37781148--37781519 Score: 289
Period size: 122 Copynumber: 3.0 Consensus size: 121
37781138 ATAATGGTGT
* * * * * * *
37781148 TGTCGGCCAATGCATGACCAACACCCAAAAAAAAT-GA-TTTTTTATCAGATAAAAAGGT-GATG
1 TGTCGGACAATGCATGACCAACATCGAAAAAAATTAAATTTTTTTATCAAATAAAAAAGTAG-TG
* ** * *
37781210 TCGGCCA-ATGCATGACCAACACTAAAAAAAATTTGAATTTTTTGTTAGATAAAAA-A-GG
65 TCGACCATA-AAATGACCAACA-T-AAAAAAATTTG-ATTTTTTATCAGATAAAAAGATGG
* * * * *
37781268 TAGTGCCGACCATGCAATGGA-CTACA-C-AAAAAAATTTGATTTTTTTTATCAAATAAAAATA-
1 T-GT-CGGACAATGC-AT-GACCAACATCGAAAAAAA-TTAAATTTTTTTATCAAATAAAAA-AG
**
37781329 TAGTGTC-AGCCATGGAATGACCAACATAAAAAAATTTTGATTTTTTATCAGATAAAAAGATGG
60 TAGTGTCGA-CCATAAAATGACCAACATAAAAAAA-TTTGATTTTTTATCAGATAAAAAGATGG
* * * * *
37781392 TGTCGGTCAATGCATGACCAATATCGAAAAAAATTAAATTTTTTTGTCAGATAAAAAAGGTGGTG
1 TGTCGGACAATGCATGACCAACATCGAAAAAAATTAAATTTTTTTATCAAATAAAAAA-GTAGTG
* * * *
37781457 TCGACCATAAAATGGCCTACATAAAAAAATTTAATTTTTTATCAGATAAAAAGGTGG
65 TCGACCATAAAATGACCAACATAAAAAAATTTGATTTTTTATCAGATAAAAAGATGG
37781514 TGTCGG
1 TGTCGG
37781520 CCATATAATG
Statistics
Matches: 202, Mismatches: 30, Indels: 38
0.75 0.11 0.14
Matches are distributed among these distances:
120 3 0.01
121 15 0.07
122 93 0.46
123 48 0.24
124 42 0.21
125 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (121 bp):
TGTCGGACAATGCATGACCAACATCGAAAAAAATTAAATTTTTTTATCAAATAAAAAAGTAGTGT
CGACCATAAAATGACCAACATAAAAAAATTTGATTTTTTATCAGATAAAAAGATGG
Found at i:37782935 original size:60 final size:59
Alignment explanation
Indices: 37782787--37783428 Score: 563
Period size: 60 Copynumber: 10.7 Consensus size: 59
37782777 GAAATGAGGG
* * * *
37782787 AAAGTTGGTGTTGGCCAATGCATAGCCAACACAAAAAAAATT-ATTTTTTATCTGATAA
1 AAAGGTGGTGTCGGCCAATGCATGGCCAACACAAAAAAAATTAATTTTTTATCAGATAA
* ** *
37782845 AAATGGTGGTATTAGCCAATGCATGGCCAACACAAAAAAAAATTAACTTTTTATCAGATAA
1 AAA-GGTGGTGTCGGCCAATGCATGGCCAACAC-AAAAAAAATTAATTTTTTATCAGATAA
* * * *
37782906 AAAGATGGTGTCGGGCAA-GCATTGGCCAACAC--CAAAAATTGGATTTTTTTATCAGATAA
1 AAAGGTGGTGTCGGCCAATGCA-TGGCCAACACAAAAAAAATT--AATTTTTTATCAGATAA
* * * *
37782965 AAAGGTGGTGTTGGCCAATGTATGACCAACACTAAAAAAAATTTGAATTTTTTGTCAGATAAA
1 AAAGGTGGTGTCGGCCAATGCATGGCCAACAC-AAAAAAAA-TT-AATTTTTTATCAGAT-AA
* * * * * * *
37783028 AAAGGTAGTGTCGGCC-ATGCAATGGACTACACCAAAAAATTTGATTTTTTTATCAAATAA
1 AAAGGTGGTGTCGGCCAATGC-ATGGCCAACACAAAAAAAATT-AATTTTTTATCAGATAA
* * * * * * *
37783088 AAAGATGGTGTCGACCAATGCATGGCCAACAC-CAAAAATTTAAAATTTTTTGTTAAATAGA
1 AAAGGTGGTGTCGGCCAATGCATGGCCAACACAAAAAAAATT--AATTTTTTATCAGATA-A
* *
37783149 AAAGGTGGTGTCGACC-ATGCAATGGCCAACATAAAAAAAATTTAATTTTTTTATCAGATAA
1 AAAGGTGGTGTCGGCCAATGC-ATGGCCAACACAAAAAAAA-TTAA-TTTTTTATCAGATAA
* * * * *
37783210 AAAGGTGGTGCCGGTCAATACATGGCCAACACAAAAAAAATTGA-TTTTTATCAAATAAA
1 AAAGGTGGTGTCGGCCAATGCATGGCCAACACAAAAAAAATTAATTTTTTATCAGAT-AA
* ** * *
37783269 AAAGGTGGTGTCGGCC-ATGAAATGGCTTACATC-AAAAAAATT--GTTTTTATCTGATAA
1 AAAGGTGGTGTCGGCCAATG-CATGGCCAACA-CAAAAAAAATTAATTTTTTATCAGATAA
* *
37783326 AAAGGTGGTGTCGGCCAATGCATTGCCAACACAAAAAAAAATTGATTTTTTATCAGATAA
1 AAAGGTGGTGTCGGCCAATGCATGGCCAACAC-AAAAAAAATTAATTTTTTATCAGATAA
* * *
37783386 AAAGGTGGTGTCGGCC-ATGTAATGGCCCACACCAAAATAAATT
1 AAAGGTGGTGTCGGCCAATG-CATGGCCAACA-CAAAAAAAATT
37783429 TTTTTTGTTA
Statistics
Matches: 477, Mismatches: 75, Indels: 62
0.78 0.12 0.10
Matches are distributed among these distances:
56 1 0.00
57 32 0.07
58 38 0.08
59 111 0.23
60 123 0.26
61 97 0.20
62 47 0.10
63 28 0.06
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (59 bp):
AAAGGTGGTGTCGGCCAATGCATGGCCAACACAAAAAAAATTAATTTTTTATCAGATAA
Found at i:37787045 original size:23 final size:23
Alignment explanation
Indices: 37787013--37787091 Score: 95
Period size: 23 Copynumber: 3.4 Consensus size: 23
37787003 TACATGTATT
* *
37787013 TTACTGTTTCACACTTTGTGTGC
1 TTACTATTTCACACTTCGTGTGC
37787036 TTACTATTTCACACTTCGTGTGC
1 TTACTATTTCACACTTCGTGTGC
* * *
37787059 TTACTGTTTCGCACCTCGTGTGC
1 TTACTATTTCACACTTCGTGTGC
*
37787082 CTACTGATTT
1 TTACT-ATTT
37787092 GCGCTATGTG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 45 0.94
24 3 0.06
ACGTcount: A:0.14, C:0.25, G:0.16, T:0.44
Consensus pattern (23 bp):
TTACTATTTCACACTTCGTGTGC
Found at i:37787140 original size:23 final size:22
Alignment explanation
Indices: 37787076--37787155 Score: 97
Period size: 23 Copynumber: 3.5 Consensus size: 22
37787066 TTCGCACCTC
* *
37787076 GTGTGCCTACTGATTTGCGCTAT
1 GTGTGCCTACTGA-TTGCACTGT
**
37787099 GTGCACCTACTGATTGCACTGT
1 GTGTGCCTACTGATTGCACTGT
37787121 GTGTGCCTACTGGATTGCACTGT
1 GTGTGCCTACT-GATTGCACTGT
*
37787144 GTGTGCTTACTG
1 GTGTGCCTACTG
37787156 TTTCCCCAGC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
22 17 0.35
23 32 0.65
ACGTcount: A:0.14, C:0.23, G:0.28, T:0.36
Consensus pattern (22 bp):
GTGTGCCTACTGATTGCACTGT
Found at i:37787155 original size:45 final size:46
Alignment explanation
Indices: 37787053--37787155 Score: 104
Period size: 45 Copynumber: 2.3 Consensus size: 46
37787043 TTCACACTTC
* *
37787053 GTGTGCTTACTGTTTCGCACCTCGTGTGCCTACTGATTTGCGCTAT
1 GTGTGCTTACTGATTCGCACCTCGTGTGCCTACTGATTTGCACTAT
** * * *
37787099 GTGCACCTACTGATT-GCA-CTGTGTGTGCCTACTGGA-TTGCACTGT
1 GTGTGCTTACTGATTCGCACCT-CGTGTGCCTACT-GATTTGCACTAT
37787144 GTGTGCTTACTG
1 GTGTGCTTACTG
37787156 TTTCCCCAGC
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
44 2 0.04
45 30 0.67
46 13 0.29
ACGTcount: A:0.13, C:0.24, G:0.26, T:0.37
Consensus pattern (46 bp):
GTGTGCTTACTGATTCGCACCTCGTGTGCCTACTGATTTGCACTAT
Found at i:37787658 original size:60 final size:59
Alignment explanation
Indices: 37787586--37787836 Score: 271
Period size: 60 Copynumber: 4.3 Consensus size: 59
37787576 TTGTCAGATA
*
37787586 AAAAAGGTGGTGTCGGCCATGCAATGGCCAACACCAAAAAAATTTGATTTGTATTAAAT
1 AAAAAGGTGGTGTCGGCCATGCAATGGCCAACACCAAAAAAATTTGATTTTTATTAAAT
* * * * *
37787645 AAAAAAGGTGGTGTCGGTCATGCAATGACCTACACCAAAAAAA-TTGTTTTTTATCT-GAT
1 -AAAAAGGTGGTGTCGGCCATGCAATGGCCAACACCAAAAAAATTTGATTTTTAT-TAAAT
* * * * *
37787704 AAAAAGGTGGTGTCGGCCAATGC-ATTGTCAACACCAAGAAAATTTGATTTTTTATCAGAT
1 AAAAAGGTGGTGTCGGCC-ATGCAATGGCCAACACCAAAAAAATTTGA-TTTTTATTAAAT
* * * *
37787764 AAAACGGTGGTGTCGGTCATGCAATGGCTAACACC-AAAAAATTT--TTTTTGTTAAATT
1 AAAAAGGTGGTGTCGGCCATGCAATGGCCAACACCAAAAAAATTTGATTTTTATTAAA-T
*
37787821 AAGAAGGTGGTGTCGG
1 AAAAAGGTGGTGTCGG
37787837 ACCAACACCA
Statistics
Matches: 159, Mismatches: 25, Indels: 17
0.79 0.12 0.08
Matches are distributed among these distances:
56 8 0.05
57 15 0.09
58 31 0.19
59 30 0.19
60 75 0.47
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (59 bp):
AAAAAGGTGGTGTCGGCCATGCAATGGCCAACACCAAAAAAATTTGATTTTTATTAAAT
Found at i:37787718 original size:118 final size:117
Alignment explanation
Indices: 37787572--37787841 Score: 323
Period size: 118 Copynumber: 2.3 Consensus size: 117
37787562 GGAGCTCAAA
*
37787572 TTTTTTGTCAGATAAAAAAGGTGGTGTCGGCC-ATGCAATGGCCAACACCAAAAAAATTTGA-TT
1 TTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAATGC-ATGGCCAACACCAAAAAAATTTGATTT
*
37787635 TGTATTAAATAAAAAAGGTGGTGTCGGTCATGCAATGACCT-ACACCAAAAAAATT
65 TGTATCAAAT-AAAAAGGTGGTGTCGGTCATGCAATG-CCTAACACC-AAAAAATT
* * * *
37787690 GTTTTTTATCTGAT-AAAAAGGTGGTGTCGGCCAATGCATTGTCAACACCAAGAAAATTTGATTT
1 -TTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAATGCATGGCCAACACCAAAAAAATTTGATTT
* * * *
37787754 TTTATCAGATAAAACGGTGGTGTCGGTCATGCAATGGCTAACACCAAAAAATT
65 TGTATCAAATAAAAAGGTGGTGTCGGTCATGCAATGCCTAACACCAAAAAATT
* * * * *
37787807 TTTTTTGTTAAATTAAGAAGGTGGTGTCGGACCAA
1 TTTTTTATCAGATAAAAAAGGTGGTGTCGG-CCAA
37787842 CACCAAATTT
Statistics
Matches: 131, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
116 9 0.07
117 25 0.19
118 73 0.56
119 24 0.18
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (117 bp):
TTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAATGCATGGCCAACACCAAAAAAATTTGATTTT
GTATCAAATAAAAAGGTGGTGTCGGTCATGCAATGCCTAACACCAAAAAATT
Found at i:37788763 original size:61 final size:61
Alignment explanation
Indices: 37788473--37788926 Score: 468
Period size: 60 Copynumber: 7.6 Consensus size: 61
37788463 AAGTTCAAAG
* * * **
37788473 ACAAAAAAA-TT-A-TTTTTTATCTGATAAAAATGGTGGTATCAACCAATGCATGGCCAAC
1 ACAAAAAAATTTGATTTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAATGCATGGCCAAC
* *
37788531 ACAAAAAAA-AT-AATTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAA-GCATTGGCCAAC
1 ACAAAAAAATTTGATTTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAATGCA-TGGCCAAC
* * * *
37788590 AC-CAAAAATTAGATTTTTTTATCAGAT-AAAAAGGTGGGGTCGGCCAATGCATGACCAAC
1 ACAAAAAAATTTGATTTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAATGCATGGCCAAC
* * * * *
37788649 ACTAAAAAAATTTTGAATTTTTTGTCAGATAAAAAAGGTAGTGTCGGCC-ATGCAATGGACTAC
1 AC-AAAAAAA-TTTGATTTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAATGC-ATGGCCAAC
* * * *
37788712 ACCAAAAAATTTGATTTTTTTATCAAAT-AAAAAGATGGTGTCGACCAATGCATGGCCAAC
1 ACAAAAAAATTTGATTTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAATGCATGGCCAAC
* * * * * * *
37788772 ACCAAAAATTTTGAATTTTTTGTTAAATAAAAAAGGTGGTGTCGACC-ATGCAATGGCCAAC
1 ACAAAAAAATTTGATTTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAATGC-ATGGCCAAC
* * *
37788833 ATAAAAAAATTTAATTTTTTTATCAGAT-AAAAAGGTGGTGTCGGTCAATGCATGGCCAAC
1 ACAAAAAAATTTGATTTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAATGCATGGCCAAC
* * *
37788893 ACAAAAAAA--TAAATTTTTTGTCAGATAAAAAAGG
1 ACAAAAAAATTTGATTTTTTTATCAGATAAAAAAGG
37788927 CATGGCTGAC
Statistics
Matches: 333, Mismatches: 48, Indels: 29
0.81 0.12 0.07
Matches are distributed among these distances:
58 34 0.10
59 74 0.22
60 100 0.30
61 75 0.23
62 26 0.08
63 24 0.07
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (61 bp):
ACAAAAAAATTTGATTTTTTTATCAGATAAAAAAGGTGGTGTCGGCCAATGCATGGCCAAC
Found at i:37788823 original size:121 final size:120
Alignment explanation
Indices: 37788485--37789122 Score: 583
Period size: 121 Copynumber: 5.4 Consensus size: 120
37788475 AAAAAAATTA
* * * *
37788485 TTTTTTATCTGATAAAAATGGTGGTATCAACCAATGCATGGCCAACACAAAAAAAAT-AATTTTT
1 TTTTTTATCAGATAAAAA-GGTGGTGTCGACCAATGCATGGCCAACACAAAAATAATGAATTTTT
* * * *
37788549 TATCAGATAAAAAAGGTGGTGTCGGCCAAGCATTGGCCAACACC-AAAAATTAGAT
65 TGTCAGATAAAAAAGGTGGTGTCGGCCATGCAATGGCCAACACCAAAAAATTTGAT
* * *
37788604 TTTTTTATCAGATAAAAAGGTGGGGTCGGCCAATGCATGACCAACACTAAAAA-AATTTTGAATT
1 TTTTTTATCAGATAAAAAGGTGGTGTCGACCAATGCATGGCCAACAC-AAAAATAA---TGAATT
* * *
37788668 TTTTGTCAGATAAAAAAGGTAGTGTCGGCCATGCAATGGACTACACCAAAAAATTTGAT
62 TTTTGTCAGATAAAAAAGGTGGTGTCGGCCATGCAATGGCCAACACCAAAAAATTTGAT
* * **
37788727 TTTTTTATCAAATAAAAAGATGGTGTCGACCAATGCATGGCCAACACCAAAAATTTTGAATTTTT
1 TTTTTTATCAGATAAAAAGGTGGTGTCGACCAATGCATGGCCAACA-CAAAAATAATGAATTTTT
* * * ** *
37788792 TGTTAAATAAAAAAGGTGGTGTCGACCATGCAATGGCCAACATAAAAAAATTTAAT
65 TGTCAGATAAAAAAGGTGGTGTCGGCCATGCAATGGCCAACACCAAAAAATTTGAT
** *
37788848 TTTTTTATCAGATAAAAAGGTGGTGTCGGTCAATGCATGGCCAACACAAAAA-AATAAATTTTTT
1 TTTTTTATCAGATAAAAAGGTGGTGTCGACCAATGCATGGCCAACACAAAAATAATGAATTTTTT
** *
37788912 GTCAGATAAAAAA---GGCAT-GG-C-TG--A----C-AC-CAAAAAAATTTGAT
66 GTCAGATAAAAAAGGTGGTGTCGGCCATGCAATGGCCAACACCAAAAAATTTGAT
* * ** *
37788953 TTTTA--TCAGATAAAAAAGATGGTGTCGACC-ATGCAATGGCTTACACCAAAAA-AAT-TATTT
1 TTTTTTATCAGAT-AAAAAGGTGGTGTCGACCAATGC-ATGGCCAACA-CAAAAATAATGAATTT
* * * * * *
37789013 TTTATCTGGT-AAAAAGGTGGTGTCGGCCAATGC-ATTGTCAACACCAAAAGAATTT-AA
63 TTTGTCAGATAAAAAAGGTGGTGTCGGCC-ATGCAATGGCCAACACCAAAA-AATTTGAT
* *
37789070 TTTTTTATCAGATAAAAAGGTGGTGTCGGCC-ATTCAATGGCCAACACCAAAAA
1 TTTTTTATCAGATAAAAAGGTGGTGTCGACCAATGC-ATGGCCAACA-CAAAAA
37789123 AAATTCTTAA
Statistics
Matches: 428, Mismatches: 63, Indels: 57
0.78 0.11 0.10
Matches are distributed among these distances:
103 15 0.04
104 34 0.08
105 25 0.06
106 5 0.01
107 3 0.01
108 1 0.00
110 2 0.00
111 2 0.00
113 2 0.00
114 1 0.00
115 2 0.00
116 5 0.01
117 10 0.02
118 66 0.15
119 48 0.11
120 6 0.01
121 99 0.23
122 45 0.11
123 56 0.13
124 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (120 bp):
TTTTTTATCAGATAAAAAGGTGGTGTCGACCAATGCATGGCCAACACAAAAATAATGAATTTTTT
GTCAGATAAAAAAGGTGGTGTCGGCCATGCAATGGCCAACACCAAAAAATTTGAT
Found at i:37788932 original size:44 final size:45
Alignment explanation
Indices: 37788882--37788970 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 45
37788872 GTCGGTCAAT
*
37788882 GCATGGCCAACA-CAAAAAAA-TAAATTTTTTGTCAGATAAAAAAG
1 GCATGGCCAACACCAAAAAAATTAAA-TTTTTATCAGATAAAAAAG
** **
37788926 GCATGGCTGACACCAAAAAAATTTGATTTTTATCAGATAAAAAAG
1 GCATGGCCAACACCAAAAAAATTAAATTTTTATCAGATAAAAAAG
37788971 ATGGTGTCGA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
44 10 0.26
45 26 0.68
46 2 0.05
ACGTcount: A:0.47, C:0.13, G:0.15, T:0.25
Consensus pattern (45 bp):
GCATGGCCAACACCAAAAAAATTAAATTTTTATCAGATAAAAAAG
Found at i:37789002 original size:60 final size:59
Alignment explanation
Indices: 37788928--37789124 Score: 238
Period size: 60 Copynumber: 3.3 Consensus size: 59
37788918 TAAAAAAGGC
* * *
37788928 ATGGCTGACACCAAAAAAATTTGA-TTTTTATCAGATAAAAAAGATGGTGTCGACCATGCA
1 ATGGCTAACACCAAAAAAATTT-ATTTTTTATCAGAT-AAAAAGGTGGTGTCGGCCATGCA
* * *
37788988 ATGGCTTACACCAAAAAAA-TTATTTTTTATCTGGTAAAAAGGTGGTGTCGGCCAATGCA
1 ATGGCTAACACCAAAAAAATTTATTTTTTATCAGATAAAAAGGTGGTGTCGGCC-ATGCA
* * * *
37789047 TTGTC-AACACCAAAAGAATTTAATTTTTTATCAGATAAAAAGGTGGTGTCGGCCATTCA
1 ATGGCTAACACCAAAAAAATTT-ATTTTTTATCAGATAAAAAGGTGGTGTCGGCCATGCA
*
37789106 ATGGCCAACACCAAAAAAA
1 ATGGCTAACACCAAAAAAA
37789125 ATTCTTAAAT
Statistics
Matches: 117, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
58 28 0.24
59 29 0.25
60 60 0.51
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (59 bp):
ATGGCTAACACCAAAAAAATTTATTTTTTATCAGATAAAAAGGTGGTGTCGGCCATGCA
Found at i:37789029 original size:103 final size:104
Alignment explanation
Indices: 37788835--37789027 Score: 239
Period size: 104 Copynumber: 1.8 Consensus size: 104
37788825 TGGCCAACAT
* *
37788835 AAAAAAATTTAATTTTTTTATCAGATAAAAAGGTGGTGTCGGTCAATGCATGGCCAACACAAAAA
1 AAAAAAATTTAA-TTTTTTATCAGATAAAAAGATGGTGTCGGACAATGCATGGCCAACACAAAAA
*
37788900 AATAAATTTTTTGTCAGATAAAAAAGGCATGGCTGACACC
65 AATAAATTTTTTATCAGATAAAAAAGGCATGGCTGACACC
* * **
37788940 AAAAAAATTTGA-TTTTTATCAGATAAAAAAGATGGTGTC-GACCATGCAATGGCTTACACCAAA
1 AAAAAAATTTAATTTTTTATCAGAT-AAAAAGATGGTGTCGGACAATGC-ATGGCCAACA-CAAA
* * *
37789003 AAAAT-TATTTTTTATCTGGTAAAAA
63 AAAATAAATTTTTTATCAGATAAAAA
37789028 GGTGGTGTCG
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
103 18 0.24
104 37 0.49
105 20 0.27
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (104 bp):
AAAAAAATTTAATTTTTTATCAGATAAAAAGATGGTGTCGGACAATGCATGGCCAACACAAAAAA
ATAAATTTTTTATCAGATAAAAAAGGCATGGCTGACACC
Found at i:37789112 original size:222 final size:224
Alignment explanation
Indices: 37788710--37789124 Score: 551
Period size: 222 Copynumber: 1.9 Consensus size: 224
37788700 GCAATGGACT
37788710 ACACCAAAAAATTTGATTTTTTTATCAAATAAAAAGATGGTGTCGACCAATGCATGGCCAACACC
1 ACACCAAAAAATTTGA-TTTTTTATCAAATAAAAAGATGGTGTCGACCAATGCATGGCCAACACC
** * *
37788775 AAAAATTTTGAATTTTTTGTTAAATAAAAAAGGTGGTGTCGACCATGCAATGGCCAACATAAAAA
65 AAAAAAATT-AATTTTTTATTAAATAAAAAAGGTGGTGTCGACCATGCAATGGCCAACACAAAAA
37788840 AATTTAATTTTTTTATCAGATAAAAAGGTGGTGTCGGTCAATGCATGGCCAACA-CAAAAAAATA
129 AATTTAATTTTTTTATCAGATAAAAAGGTGGTGTCGGTCAATGCATGGCCAACACCAAAAAAATA
37788904 AATTTTTTGTCAGATAAAAAAGGCATGGCTG
194 AATTTTTTGTCAGATAAAAAAGGCATGGCTG
* **
37788935 ACACCAAAAAAATTTGA-TTTTTATCAGATAAAAAAGATGGTGTCGACC-ATGCAATGGCTTACA
1 ACACC-AAAAAATTTGATTTTTTATCAAAT-AAAAAGATGGTGTCGACCAATGC-ATGGCCAACA
** * * *
37788998 CCAAAAAAATT-ATTTTTTATCT-GGT-AAAAAGGTGGTGTCGGCCAATGC-ATTGTCAACACCA
63 CCAAAAAAATTAATTTTTTAT-TAAATAAAAAAGGTGGTGTCGACC-ATGCAATGGCCAACA-CA
* * *
37789059 AAAGAATTTAA-TTTTTTATCAGATAAAAAGGTGGTGTCGG-CCATTCAATGGCCAACACCAAAA
125 AAAAAATTTAATTTTTTTATCAGATAAAAAGGTGGTGTCGGTCAATGC-ATGGCCAACACCAAAA
37789122 AAA
189 AAA
37789125 ATTCTTAAAT
Statistics
Matches: 167, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
221 4 0.02
222 64 0.38
223 32 0.19
224 16 0.10
225 40 0.24
226 11 0.07
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (224 bp):
ACACCAAAAAATTTGATTTTTTATCAAATAAAAAGATGGTGTCGACCAATGCATGGCCAACACCA
AAAAAATTAATTTTTTATTAAATAAAAAAGGTGGTGTCGACCATGCAATGGCCAACACAAAAAAA
TTTAATTTTTTTATCAGATAAAAAGGTGGTGTCGGTCAATGCATGGCCAACACCAAAAAAATAAA
TTTTTTGTCAGATAAAAAAGGCATGGCTG
Found at i:37789760 original size:33 final size:33
Alignment explanation
Indices: 37789720--37789794 Score: 134
Period size: 33 Copynumber: 2.3 Consensus size: 33
37789710 TCTATAGAAG
37789720 CGCCGCTAAATTTTTTAGCGGCACTTTCTAAAT
1 CGCCGCTAAATTTTTTAGCGGCACTTTCTAAAT
*
37789753 CGCCGCTAAATTTTTTAGCGGCGCTTTCTAAAT
1 CGCCGCTAAATTTTTTAGCGGCACTTTCTAAAT
37789786 CGCCG-TAAA
1 CGCCGCTAAA
37789795 AAATGCCGCT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
32 4 0.10
33 37 0.90
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (33 bp):
CGCCGCTAAATTTTTTAGCGGCACTTTCTAAAT
Found at i:37789942 original size:43 final size:43
Alignment explanation
Indices: 37789886--37790005 Score: 159
Period size: 43 Copynumber: 2.8 Consensus size: 43
37789876 ACTTACCCAT
* * *
37789886 AAGCGCCGTTGAAGGCCATATTCTTTAGCGGCGCAGGATTAAC
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCAGGATCAAC
* * *** *
37789929 AAGCGCCGCTGAAGGCCATGTTCTTTAGTGGCTCTTTATCCAC
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCAGGATCAAC
37789972 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGC
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGC
37790006 CATGTTCTTT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (43 bp):
AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCAGGATCAAC
Found at i:37790009 original size:18 final size:18
Alignment explanation
Indices: 37789986--37790023 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
37789976 GCCGCTGAAG
37789986 GCCATGTTCTTTAGCGGC
1 GCCATGTTCTTTAGCGGC
37790004 GCCATGTTCTTTAGCGGC
1 GCCATGTTCTTTAGCGGC
37790022 GC
1 GC
37790024 TTTTTCCACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.11, C:0.29, G:0.29, T:0.32
Consensus pattern (18 bp):
GCCATGTTCTTTAGCGGC
Found at i:37790476 original size:66 final size:66
Alignment explanation
Indices: 37790370--37790517 Score: 208
Period size: 66 Copynumber: 2.2 Consensus size: 66
37790360 CTCGCTGCTG
* *
37790370 CCTCCGCTTTAAGTTGTATGTGGAGTTCTTCATATTTTTTTTGAGACTCTACTTCTCTCACTGCA
1 CCTCCTCTTTAAGTTGTATGTGGAGTTCATCATATTTTTTTTGAGACTCTACTTCTCTCACTGCA
37790435 A
66 A
* * * **
37790436 CCTCCTCTTTAAGTTTTA-GATGGAGTTCATCATATTTTTTTTGAGCCTCTACTTCTTTCGTTGC
1 CCTCCTCTTTAAGTTGTATG-TGGAGTTCATCATATTTTTTTTGAGACTCTACTTCTCTCACTGC
*
37790500 AG
65 AA
37790502 CCTCCTCTTTAAGTTG
1 CCTCCTCTTTAAGTTG
37790518 AGCAATTTGC
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
65 1 0.01
66 71 0.99
ACGTcount: A:0.17, C:0.23, G:0.15, T:0.45
Consensus pattern (66 bp):
CCTCCTCTTTAAGTTGTATGTGGAGTTCATCATATTTTTTTTGAGACTCTACTTCTCTCACTGCA
A
Found at i:37795987 original size:49 final size:49
Alignment explanation
Indices: 37795930--37796523 Score: 456
Period size: 49 Copynumber: 11.6 Consensus size: 49
37795920 TTTAATATAA
* *
37795930 TTAA-ATAATTAGTTACTTTAATATCATTAAATAATTAAATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
* * *
37795978 TTAATATAATAATTTACTTTAATATAATTAAATAATTAAAT-ATTTAAT
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
* *
37796026 TTAATATAATTATTTACTTTAGTATAATTAAATGATTAAATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
*
37796075 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
* * ** *
37796124 TTAA-AT-A-T-TTAAC--TAATCGATAGTGTTTATAATTAAATACATAATTAAAC
1 TTAATATAATTATTTACTTTAAT--ATAAT-TAAATAATTAAAT-C-T--TTTAAC
* * * * * * *
37796174 ATGAT-TAAATAATTTAATATAATCATTTAGTTTAATATAATTAAATAATTATATCTTTTAAA
1 TTAATAT-AATTATTTACTTTAAT-A--TA-ATTAA-ATAA-T---T-A--A-ATCTTTTAAC
* * *
37796236 TTAATATACTTATTTACTTTAATATAATTAAATAATTAAAT-ATTTAAT
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
* *
37796284 TTAATATAATTATTTACTTTAGTATAATTAAATGATTAAATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
* *
37796333 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTACC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
* * *
37796382 TTAAATATTTAATTAATCGATAGTGTT--TATAATTAAATACATAATAAAACATGATTAAATAAC
1 TT-AATA--TAATT-AT--TTACT-TTAATATAATTAAATA-AT--TAAATC-T--TT---TAAC
* ** *
37796445 TTAATATAATTATTTAGTTTAATATAATTAAATAATTTTATCTTTTAAA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
*
37796494 TTAATATAATTATTTAATTTAATATAATTA
1 TTAATATAATTATTTACTTTAATATAATTA
37796524 TTTACTTTAA
Statistics
Matches: 439, Mismatches: 59, Indels: 95
0.74 0.10 0.16
Matches are distributed among these distances:
43 4 0.01
45 8 0.02
46 11 0.03
47 2 0.00
48 93 0.21
49 174 0.40
50 13 0.03
52 8 0.02
53 3 0.01
54 16 0.04
55 9 0.02
56 9 0.02
57 18 0.04
58 22 0.05
59 5 0.01
60 7 0.02
61 1 0.00
62 24 0.05
63 7 0.02
64 1 0.00
65 2 0.00
66 2 0.00
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.47
Consensus pattern (49 bp):
TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
Found at i:37796039 original size:18 final size:18
Alignment explanation
Indices: 37795972--37796104 Score: 74
Period size: 18 Copynumber: 8.0 Consensus size: 18
37795962 AATTAAATCT
* *
37795972 TTTAACTTAATATAATAA
1 TTTAATTTAATATAATTA
*
37795990 TTTACTTTAATATAATTA
1 TTTAATTTAATATAATTA
*
37796008 ---AA--TAAT-TAAATA
1 TTTAATTTAATATAATTA
37796020 TTTAATTTAATATAATTA
1 TTTAATTTAATATAATTA
* *
37796038 TTTACTTTAGTATAATTA
1 TTTAATTTAATATAATTA
* *
37796056 ---AA-TGATTA-AATCT-
1 TTTAATTTAATATAAT-TA
* *
37796069 TTTAACTTAATATAATCA
1 TTTAATTTAATATAATTA
*
37796087 TTTACTTTAATATAATTA
1 TTTAATTTAATATAATTA
37796105 AATAATTAAA
Statistics
Matches: 85, Mismatches: 17, Indels: 26
0.66 0.13 0.20
Matches are distributed among these distances:
12 5 0.06
13 7 0.08
14 5 0.06
15 4 0.05
16 2 0.02
17 8 0.09
18 54 0.64
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (18 bp):
TTTAATTTAATATAATTA
Found at i:37796100 original size:97 final size:98
Alignment explanation
Indices: 37795930--37796523 Score: 534
Period size: 97 Copynumber: 5.8 Consensus size: 98
37795920 TTTAATATAA
* * *
37795930 TTAA-ATAATTAGTTACTTTAATATCATTAAATAATTAAATCTTTTAACTTAATATAATAATTTA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATCATTTA
*
37795994 CTTTAATATAATTAAATAATTAAAT-ATTTAAT
66 CTTTAATATAATTAAATAATTAAATCTTTTAAT
* *
37796026 TTAATATAATTATTTACTTTAGTATAATTAAATGATTAAATCTTTTAACTTAATATAATCATTTA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATCATTTA
37796091 CTTTAATATAATTAAATAATTAAATCTTTTAACT
66 CTTTAATATAATTAAATAATTAAATCTTTTAA-T
* * * * * * * *
37796125 TAAATATTTAACTAATCGATAGTGTTTATAATTAAATACATAATTAAA-CATGATTAAATAATTT
1 TTAATA--TAA-TTAT--TTACT-TTAAT-A-TAATTAAATAATTAAATC-T--TT---TAACTT
* * *
37796189 AATATAATCATTTAGTTTAATATAATTAAATAATTATATCTTTTAAA
52 AATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAAT
* * * *
37796236 TTAATATACTTATTTACTTTAATATAATTAAATAATTAAAT-ATTTAATTTAATATAATTATTTA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATCATTTA
* * *
37796300 CTTTAGTATAATTAAATGATTAAATCTTTTAAC
66 CTTTAATATAATTAAATAATTAAATCTTTTAAT
* * *
37796333 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTACCTTAAATATTTAATTAA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTT-AATA--TAA-TCA
* * * *
37796398 TCGATAGTGTT--TATAATTAAATACATAATAAAACATGATTAAATAAC
62 T--TTACT-TTAATATAATTAAATA-AT--TAAATC-T--TT---TAAT
* ** * *
37796445 TTAATATAATTATTTAGTTTAATATAATTAAATAATTTTATCTTTTAAATTAATATAATTATTTA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATCATTTA
*
37796510 ATTTAATATAATTA
66 CTTTAATATAATTA
37796524 TTTACTTTAA
Statistics
Matches: 408, Mismatches: 53, Indels: 63
0.78 0.10 0.12
Matches are distributed among these distances:
96 4 0.01
97 166 0.41
98 11 0.03
99 10 0.02
100 2 0.00
101 6 0.01
102 6 0.01
103 25 0.06
104 9 0.02
105 11 0.03
106 13 0.03
107 23 0.06
108 6 0.01
109 9 0.02
111 9 0.02
112 98 0.24
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.47
Consensus pattern (98 bp):
TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATCATTTA
CTTTAATATAATTAAATAATTAAATCTTTTAAT
Found at i:37796277 original size:18 final size:18
Alignment explanation
Indices: 37796177--37796316 Score: 68
Period size: 18 Copynumber: 8.4 Consensus size: 18
37796167 ATTAAACATG
37796177 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
* ** *
37796195 ATCATTTAGTTTAATATA
1 ATTAAATAATTTAATATA
37796213 ATTAAATAA-TT-ATAT-
1 ATTAAATAATTTAATATA
* * *
37796228 CTT--TTAAATTAATATA
1 ATTAAATAATTTAATATA
* ** *
37796244 CTTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
37796262 ATTAAATAA-TTAA-AT-
1 ATTAAATAATTTAATATA
37796277 ATT---TAATTTAATATA
1 ATTAAATAATTTAATATA
** * *
37796292 ATTATTTACTTTAGTATA
1 ATTAAATAATTTAATATA
37796310 ATTAAAT
1 ATTAAAT
37796317 GATTAAATCT
Statistics
Matches: 91, Mismatches: 20, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
12 3 0.03
13 7 0.08
14 4 0.04
15 12 0.13
16 9 0.10
17 6 0.07
18 50 0.55
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (18 bp):
ATTAAATAATTTAATATA
Found at i:37796387 original size:258 final size:257
Alignment explanation
Indices: 37795921--37796523 Score: 1055
Period size: 258 Copynumber: 2.3 Consensus size: 257
37795911 TATGGTTACT
* * * * *
37795921 TTAATATAATTAA-ATAATTAGTTACTTTAATATCATTAAATAATTAAATCTTTTAACTTAATAT
1 TTAA-ATAATTAATATAATTATTTAGTTTAATATAATTAAATAATTATATCTTTTAAATTAATAT
*
37795985 AATAATTTACTTTAATATAATTAAATAATTAAATATTTAATTTAATATAATTATTTACTTTAGTA
65 AATTATTTACTTTAATATAATTAAATAATTAAATATTTAATTTAATATAATTATTTACTTTAGTA
37796050 TAATTAAATGATTAAATCTTTTAACTTAATATAATCATTTACTTTAATATAATTAAATAATTAAA
130 TAATTAAATGATTAAATCTTTTAACTTAATATAATCATTTACTTTAATATAATTAAATAATTAAA
*
37796115 TCTTTTAACTTAAATATTTAACTAATCGATAGTGTTTATAATTAAATACATAATTAAACATGA
195 TCTTTTAACTTAAATATTTAACTAATCGATAGTGTTTATAATTAAATACATAATAAAACATGA
*
37796178 TTAAATAATTTAATATAATCATTTAGTTTAATATAATTAAATAATTATATCTTTTAAATTAATAT
1 TTAAATAA-TTAATATAATTATTTAGTTTAATATAATTAAATAATTATATCTTTTAAATTAATAT
*
37796243 ACTTATTTACTTTAATATAATTAAATAATTAAATATTTAATTTAATATAATTATTTACTTTAGTA
65 AATTATTTACTTTAATATAATTAAATAATTAAATATTTAATTTAATATAATTATTTACTTTAGTA
37796308 TAATTAAATGATTAAATCTTTTAACTTAATATAATCATTTACTTTAATATAATTAAATAATTAAA
130 TAATTAAATGATTAAATCTTTTAACTTAATATAATCATTTACTTTAATATAATTAAATAATTAAA
* *
37796373 TCTTTTACCTTAAATATTTAATTAATCGATAGTGTTTATAATTAAATACATAATAAAACATGA
195 TCTTTTAACTTAAATATTTAACTAATCGATAGTGTTTATAATTAAATACATAATAAAACATGA
*
37796436 TTAAATAACTTAATATAATTATTTAGTTTAATATAATTAAATAATTTTATCTTTTAAATTAATAT
1 TTAAATAA-TTAATATAATTATTTAGTTTAATATAATTAAATAATTATATCTTTTAAATTAATAT
*
37796501 AATTATTTAATTTAATATAATTA
65 AATTATTTACTTTAATATAATTA
37796524 TTTACTTTAA
Statistics
Matches: 328, Mismatches: 16, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
256 4 0.01
257 8 0.02
258 316 0.96
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.47
Consensus pattern (257 bp):
TTAAATAATTAATATAATTATTTAGTTTAATATAATTAAATAATTATATCTTTTAAATTAATATA
ATTATTTACTTTAATATAATTAAATAATTAAATATTTAATTTAATATAATTATTTACTTTAGTAT
AATTAAATGATTAAATCTTTTAACTTAATATAATCATTTACTTTAATATAATTAAATAATTAAAT
CTTTTAACTTAAATATTTAACTAATCGATAGTGTTTATAATTAAATACATAATAAAACATGA
Found at i:37796501 original size:31 final size:31
Alignment explanation
Indices: 37796463--37796570 Score: 99
Period size: 31 Copynumber: 3.3 Consensus size: 31
37796453 ATTATTTAGT
37796463 TTAATATAATTAAATAATTTTATCTTTTAAA
1 TTAATATAATTAAATAATTTTATCTTTTAAA
** * **
37796494 TTAATATAATTATTTAATTTAATATAATTATTTACT
1 TTAATATAATTAAATAATTT--TAT--CT-TTTAAA
** *
37796530 TTAATATAATTAAATAATTAAATCTTTTAAC
1 TTAATATAATTAAATAATTTTATCTTTTAAA
37796561 TTAATATAAT
1 TTAATATAAT
37796571 CATTTACTTT
Statistics
Matches: 60, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
31 32 0.53
32 1 0.02
33 3 0.05
34 2 0.03
35 1 0.02
36 21 0.35
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (31 bp):
TTAATATAATTAAATAATTTTATCTTTTAAA
Done.