Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 143 of 143
Found at i:42941975 original size:6 final size:6
Alignment explanation
Indices: 42941966--42941990 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
42941956 TGAACCAAGT
42941966 CCAAAC CCAAAC CCAAAC CCAAAC C
1 CCAAAC CCAAAC CCAAAC CCAAAC C
42941991 AAGTCAGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (6 bp):
CCAAAC
Found at i:42942075 original size:20 final size:20
Alignment explanation
Indices: 42942046--42942087 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
42942036 TGATTGACCA
* *
42942046 TTGACCGTTGATCATTGACT
1 TTGACAGTTGACCATTGACT
*
42942066 TTGACAGTTGACCGTTGACT
1 TTGACAGTTGACCATTGACT
42942086 TT
1 TT
42942088 TTTTGAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (20 bp):
TTGACAGTTGACCATTGACT
Found at i:42944514 original size:18 final size:18
Alignment explanation
Indices: 42944491--42944533 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
42944481 AGGGTTTCTG
*
42944491 TCTGTTATGGGTGGTCTT
1 TCTGTTATGGGTGATCTT
*
42944509 TCTGTTATGGTTGATCTT
1 TCTGTTATGGGTGATCTT
42944527 TCTGTTA
1 TCTGTTA
42944534 AGAGGCCTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.09, C:0.12, G:0.26, T:0.53
Consensus pattern (18 bp):
TCTGTTATGGGTGATCTT
Found at i:42947262 original size:12 final size:12
Alignment explanation
Indices: 42947247--42947283 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
42947237 ACAATTCATA
42947247 TCACTTTCAATT
1 TCACTTTCAATT
42947259 TCACTTTCACA-T
1 TCACTTTCA-ATT
42947271 TCACTTTCAATT
1 TCACTTTCAATT
42947283 T
1 T
42947284 TGATCACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 1 0.04
12 21 0.91
13 1 0.04
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (12 bp):
TCACTTTCAATT
Found at i:42951978 original size:13 final size:13
Alignment explanation
Indices: 42951955--42951987 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
42951945 GCTGTTGATC
42951955 GACTGTTGACCGTT
1 GACT-TTGACCGTT
42951969 GACTTTGACCGTT
1 GACTTTGACCGTT
42951982 GACTTT
1 GACTTT
42951988 TTCTGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.15, C:0.21, G:0.24, T:0.39
Consensus pattern (13 bp):
GACTTTGACCGTT
Found at i:42953416 original size:6 final size:6
Alignment explanation
Indices: 42953388--42953461 Score: 58
Period size: 6 Copynumber: 12.0 Consensus size: 6
42953378 TTATAATTTA
* * ** * *
42953388 TTTATT TTATTTT ATTTACT TTTATT TTTATT TTTGCT TTTATA TTTATA
1 TTTATT TT-TATT -TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
42953438 TTTATA TTTATA TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT
42953462 ATGCACTGTA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
6 49 0.88
7 5 0.09
8 2 0.04
ACGTcount: A:0.22, C:0.03, G:0.01, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:42953459 original size:18 final size:18
Alignment explanation
Indices: 42953377--42953461 Score: 73
Period size: 18 Copynumber: 4.7 Consensus size: 18
42953367 TTCATTTAGT
*
42953377 TTTATAATTTATTTATTTTA
1 TTTAT-ATTTATTT-TTATA
* *
42953397 TTT-TATTTACTTTTATT
1 TTTATATTTATTTTTATA
* **
42953414 TTTATTTTTGCTTTTATA
1 TTTATATTTATTTTTATA
*
42953432 TTTATATTTATATTTATA
1 TTTATATTTATTTTTATA
*
42953450 TTTATTTTTATT
1 TTTATATTTATT
42953462 ATGCACTGTA
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
17 6 0.12
18 42 0.81
19 1 0.02
20 3 0.06
ACGTcount: A:0.24, C:0.02, G:0.01, T:0.73
Consensus pattern (18 bp):
TTTATATTTATTTTTATA
Found at i:42953517 original size:16 final size:15
Alignment explanation
Indices: 42953491--42953526 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
42953481 TTTTGTCAAC
*
42953491 TATTTTTTATTTTGT
1 TATTTTTTATTTTCT
42953506 TATTTCTTTATTTTCT
1 TATTT-TTTATTTTCT
42953522 TATTT
1 TATTT
42953527 AATTTTGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.78
Consensus pattern (15 bp):
TATTTTTTATTTTCT
Found at i:42954844 original size:30 final size:30
Alignment explanation
Indices: 42954808--42954870 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
42954798 GGTTGACATA
42954808 TAAATAGTAGTTTTAGGTAGTGCATTCATC
1 TAAATAGTAGTTTTAGGTAGTGCATTCATC
42954838 TAAATAGTAGTTTTAGGTAGTGCATTCATC
1 TAAATAGTAGTTTTAGGTAGTGCATTCATC
42954868 TAA
1 TAA
42954871 GAGATGTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (30 bp):
TAAATAGTAGTTTTAGGTAGTGCATTCATC
Found at i:42957503 original size:31 final size:31
Alignment explanation
Indices: 42957459--42957567 Score: 100
Period size: 30 Copynumber: 3.5 Consensus size: 31
42957449 AATATAATCA
42957459 TTCATATTATAAAATTTAAATTAAATCAAAAT
1 TTCATA-TATAAAATTTAAATTAAATCAAAAT
* *
42957491 TTCATATATAAAA-TTACACTAAATCAAAAT
1 TTCATATATAAAATTTAAATTAAATCAAAAT
* * *
42957521 TT-ATATGTAACATTTCATATTAAAT-AAAAT
1 TTCATATATAAAATTT-AAATTAAATCAAAAT
* *
42957551 ATTAATAT-TAATATTTA
1 -TTCATATATAAAATTTA
42957568 TCTCAAGAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
29 8 0.12
30 25 0.38
31 23 0.35
32 10 0.15
ACGTcount: A:0.50, C:0.07, G:0.01, T:0.41
Consensus pattern (31 bp):
TTCATATATAAAATTTAAATTAAATCAAAAT
Found at i:42957505 original size:14 final size:14
Alignment explanation
Indices: 42957486--42957544 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
42957476 AAATTAAATC
42957486 AAAATTTCATATAT
1 AAAATTTCATATAT
* *
42957500 AAAATTACACTAAAT
1 AAAATTTCA-TATAT
*
42957515 CAAAATTT-ATATGT
1 -AAAATTTCATATAT
*
42957529 AACATTTCATAT-T
1 AAAATTTCATATAT
42957542 AAA
1 AAA
42957545 TAAAATATTA
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
13 9 0.26
14 15 0.43
15 5 0.14
16 6 0.17
ACGTcount: A:0.51, C:0.10, G:0.02, T:0.37
Consensus pattern (14 bp):
AAAATTTCATATAT
Found at i:42958849 original size:2 final size:2
Alignment explanation
Indices: 42958842--42958887 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
42958832 TTCAAAACAA
42958842 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
42958884 AG AG
1 AG AG
42958888 GAAAATGTTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:42961878 original size:20 final size:21
Alignment explanation
Indices: 42961843--42961887 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
42961833 ATTTAAATTG
*
42961843 ATTTTTTTACAAAATTTTATA
1 ATTTTTTTACAAAATTTAATA
*
42961864 ATTTTTTTA-ATAATTTAATA
1 ATTTTTTTACAAAATTTAATA
42961884 ATTT
1 ATTT
42961888 ATAGATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTTTTTACAAAATTTAATA
Found at i:42966350 original size:15 final size:15
Alignment explanation
Indices: 42966330--42966359 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
42966320 TAAATGAGTC
42966330 CAATTTATTAAAAAG
1 CAATTTATTAAAAAG
42966345 CAATTTATTAAAAAG
1 CAATTTATTAAAAAG
42966360 TTAGAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (15 bp):
CAATTTATTAAAAAG
Found at i:42971050 original size:7 final size:7
Alignment explanation
Indices: 42970409--42971048 Score: 1010
Period size: 7 Copynumber: 93.7 Consensus size: 7
42970399 AAAGAAAAAA
42970409 CGGGGCT
1 CGGGGCT
42970416 CGGGGCT
1 CGGGGCT
42970423 CGGGGCT
1 CGGGGCT
42970430 CGGGGCT
1 CGGGGCT
42970437 CGGGGCT
1 CGGGGCT
42970444 CGGGGCT
1 CGGGGCT
42970451 CGGGGCT
1 CGGGGCT
42970458 CGGGGCT
1 CGGGGCT
42970465 CGGGGCT
1 CGGGGCT
42970472 CGGGGCT
1 CGGGGCT
42970479 CGGGGCT
1 CGGGGCT
42970486 CGGGGCT
1 CGGGGCT
42970493 CGGGGCT
1 CGGGGCT
42970500 CGGGGCT
1 CGGGGCT
42970507 C-GGGCT
1 CGGGGCT
42970513 CGGGGCT
1 CGGGGCT
42970520 CGGGGCT
1 CGGGGCT
42970527 CGGGGCT
1 CGGGGCT
42970534 CGGGGCT
1 CGGGGCT
42970541 CGGGGCT
1 CGGGGCT
42970548 CGGGGCT
1 CGGGGCT
42970555 CGGGGCT
1 CGGGGCT
42970562 CGGGGCT
1 CGGGGCT
42970569 C-GGGCT
1 CGGGGCT
42970575 CGGGGCT
1 CGGGGCT
42970582 CGGGGCT
1 CGGGGCT
42970589 CGGGGCT
1 CGGGGCT
42970596 CGGGGCT
1 CGGGGCT
42970603 CGGGGCT
1 CGGGGCT
42970610 CGGGGCT
1 CGGGGCT
42970617 CGGGGCT
1 CGGGGCT
42970624 C-GGGCT
1 CGGGGCT
42970630 C-GGGCT
1 CGGGGCT
42970636 CGGGGCT
1 CGGGGCT
42970643 CGGGGCT
1 CGGGGCT
42970650 CGGGGCT
1 CGGGGCT
42970657 C--GGCT
1 CGGGGCT
42970662 CGGGGCT
1 CGGGGCT
42970669 CGGGGCT
1 CGGGGCT
42970676 CGGGGCT
1 CGGGGCT
42970683 CGGGGCT
1 CGGGGCT
42970690 C-GGGCT
1 CGGGGCT
42970696 C-GGGCT
1 CGGGGCT
42970702 CGGGGCT
1 CGGGGCT
42970709 C-GGGCT
1 CGGGGCT
42970715 C-GGG-T
1 CGGGGCT
42970720 CGGGGCT
1 CGGGGCT
42970727 CGGGGCCT
1 CGGGG-CT
42970735 CGGGGCT
1 CGGGGCT
42970742 CGGGGCT
1 CGGGGCT
42970749 CGGGGCT
1 CGGGGCT
42970756 C-GGGCT
1 CGGGGCT
42970762 CGGGGCCT
1 CGGGG-CT
42970770 C-GGGCT
1 CGGGGCT
42970776 CGGGGCT
1 CGGGGCT
42970783 CGGGGCT
1 CGGGGCT
42970790 CGGGGCT
1 CGGGGCT
42970797 CGGGGCT
1 CGGGGCT
42970804 CGGGGCT
1 CGGGGCT
42970811 CGGGGCT
1 CGGGGCT
42970818 CGGGGCT
1 CGGGGCT
42970825 CGGGGCT
1 CGGGGCT
42970832 CGGGGCT
1 CGGGGCT
42970839 CGGGGCT
1 CGGGGCT
42970846 CGGGGCT
1 CGGGGCT
42970853 CGGGGCT
1 CGGGGCT
42970860 CGGGGCT
1 CGGGGCT
42970867 C-GGGCT
1 CGGGGCT
42970873 CGGGGCT
1 CGGGGCT
42970880 CGGGGCT
1 CGGGGCT
42970887 CGGGGCT
1 CGGGGCT
42970894 C-GGGCT
1 CGGGGCT
42970900 CGGGGCT
1 CGGGGCT
42970907 CGGGGCT
1 CGGGGCT
42970914 CGGGGCT
1 CGGGGCT
42970921 CGGGGCT
1 CGGGGCT
42970928 CGGGGCT
1 CGGGGCT
42970935 CGGGGCT
1 CGGGGCT
*
42970942 CGGGGTT
1 CGGGGCT
*
42970949 CGGGGTT
1 CGGGGCT
*
42970956 CGGGGTT
1 CGGGGCT
*
42970963 CGGGGTT
1 CGGGGCT
42970970 CGGGG--
1 CGGGGCT
*
42970975 CGGGGTT
1 CGGGGCT
*
42970982 CGGGGTT
1 CGGGGCT
*
42970989 CGGGGTT
1 CGGGGCT
*
42970996 CGGGGTT
1 CGGGGCT
*
42971003 CGGGGTT
1 CGGGGCT
*
42971010 CGGGGTT
1 CGGGGCT
*
42971017 CGGGGTT
1 CGGGGCT
*
42971024 C-GGGTT
1 CGGGGCT
*
42971030 CGGGGTT
1 CGGGGCT
*
42971037 CGGGGTT
1 CGGGGCT
42971044 CGGGG
1 CGGGG
42971049 TTTGGGGTTT
Statistics
Matches: 615, Mismatches: 1, Indels: 34
0.95 0.00 0.05
Matches are distributed among these distances:
5 12 0.02
6 75 0.12
7 518 0.84
8 10 0.02
ACGTcount: A:0.00, C:0.27, G:0.56, T:0.17
Consensus pattern (7 bp):
CGGGGCT
Found at i:42971055 original size:7 final size:7
Alignment explanation
Indices: 42970943--42971368 Score: 544
Period size: 7 Copynumber: 62.6 Consensus size: 7
42970933 CTCGGGGCTC
*
42970943 GGGGTTC
1 GGGGTTT
*
42970950 GGGGTTC
1 GGGGTTT
*
42970957 GGGGTTC
1 GGGGTTT
*
42970964 GGGGTTC
1 GGGGTTT
*
42970971 GGGG--C
1 GGGGTTT
*
42970976 GGGGTTC
1 GGGGTTT
*
42970983 GGGGTTC
1 GGGGTTT
*
42970990 GGGGTTC
1 GGGGTTT
*
42970997 GGGGTTC
1 GGGGTTT
*
42971004 GGGGTTC
1 GGGGTTT
*
42971011 GGGGTTC
1 GGGGTTT
42971018 GGGG-TT
1 GGGGTTT
* *
42971024 CGGGTTC
1 GGGGTTT
*
42971031 GGGGTTC
1 GGGGTTT
*
42971038 GGGGTTC
1 GGGGTTT
42971045 GGGGTTT
1 GGGGTTT
42971052 GGGGTTT
1 GGGGTTT
42971059 GGGGGTTT
1 -GGGGTTT
42971067 GGGGTTT
1 GGGGTTT
42971074 GGGGTTT
1 GGGGTTT
42971081 GGGGTTT
1 GGGGTTT
42971088 --GGTTT
1 GGGGTTT
42971093 GGGGTTT
1 GGGGTTT
42971100 GGGGTTT
1 GGGGTTT
42971107 -GGGTTT
1 GGGGTTT
42971113 GGGGTTT
1 GGGGTTT
42971120 GGGGTTT
1 GGGGTTT
42971127 GGGG-TT
1 GGGGTTT
42971133 GGGGTTT
1 GGGGTTT
42971140 -GGGTTT
1 GGGGTTT
42971146 GGGGTTTT
1 GGGG-TTT
42971154 GGGGTTT
1 GGGGTTT
42971161 GGGGTTT
1 GGGGTTT
42971168 -GGGTTT
1 GGGGTTT
42971174 GGGGGTTT
1 -GGGGTTT
42971182 GGGGTTT
1 GGGGTTT
42971189 GGGGTTT
1 GGGGTTT
42971196 GGGGTTT
1 GGGGTTT
42971203 -GGGTTT
1 GGGGTTT
42971209 GGGGTTT
1 GGGGTTT
*
42971216 TGGGTTT
1 GGGGTTT
42971223 GGGGTTT
1 GGGGTTT
42971230 GGGGTTT
1 GGGGTTT
42971237 GGGG-TT
1 GGGGTTT
42971243 GGGGTTT
1 GGGGTTT
42971250 GGGG-TT
1 GGGGTTT
42971256 GGGGTTT
1 GGGGTTT
42971263 GGGGTTT
1 GGGGTTT
42971270 GGGGTTT
1 GGGGTTT
42971277 GGGGTTT
1 GGGGTTT
42971284 GGGGTTT
1 GGGGTTT
42971291 GGGGTTT
1 GGGGTTT
42971298 GGGGTTT
1 GGGGTTT
42971305 GGGGTTT
1 GGGGTTT
42971312 GTTGGGTTT
1 G--GGGTTT
42971321 -GGGTTT
1 GGGGTTT
42971327 -GGGTTT
1 GGGGTTT
42971333 GGGGTTT
1 GGGGTTT
42971340 -GGGTTT
1 GGGGTTT
42971346 -GGGTTT
1 GGGGTTT
42971352 GGGG-TT
1 GGGGTTT
42971358 GGGGTTT
1 GGGGTTT
42971365 GGGG
1 GGGG
Statistics
Matches: 392, Mismatches: 7, Indels: 40
0.89 0.02 0.09
Matches are distributed among these distances:
5 10 0.03
6 76 0.19
7 280 0.71
8 20 0.05
9 6 0.02
ACGTcount: A:0.00, C:0.04, G:0.57, T:0.40
Consensus pattern (7 bp):
GGGGTTT
Found at i:42971055 original size:21 final size:21
Alignment explanation
Indices: 42970776--42971368 Score: 421
Period size: 21 Copynumber: 28.9 Consensus size: 21
42970766 GCCTCGGGCT
* * * *
42970776 CGGGGCTCGGGGCTCGGGGCT
1 CGGGGTTCGGGGTTTGGGGTT
* * * *
42970797 CGGGGCTCGGGGCTCGGGGCT
1 CGGGGTTCGGGGTTTGGGGTT
* * * *
42970818 CGGGGCTCGGGGCTCGGGGCT
1 CGGGGTTCGGGGTTTGGGGTT
* * * *
42970839 CGGGGCTCGGGGCTCGGGGCT
1 CGGGGTTCGGGGTTTGGGGTT
* * * *
42970860 CGGGGCTC-GGGCTCGGGGCT
1 CGGGGTTCGGGGTTTGGGGTT
* * * *
42970880 CGGGGCTCGGGG-CTCGGGCT
1 CGGGGTTCGGGGTTTGGGGTT
* * * *
42970900 CGGGGCTCGGGGCTCGGGGCT
1 CGGGGTTCGGGGTTTGGGGTT
* * * *
42970921 CGGGGCTCGGGGCTCGGGGCT
1 CGGGGTTCGGGGTTTGGGGTT
*
42970942 CGGGGTTCGGGGTTCGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
*
42970963 CGGGGTTCGGGG--CGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
*
42970982 CGGGGTTCGGGGTTCGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
*
42971003 CGGGGTTCGGGGTTCGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
*
42971024 C-GGGTTCGGGGTTCGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
*
42971044 CGGGGTTTGGGGTTTGGGGGTT
1 CGGGGTTCGGGGTTT-GGGGTT
* *
42971066 TGGGGTTTGGGGTTTGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
* *
42971087 --TGGTTTGGGGTTTGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
* *
42971106 -TGGGTTTGGGGTTTGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
*
42971126 TGGGGTT-GGGGTTT-GGGTT
1 CGGGGTTCGGGGTTTGGGGTT
* *
42971145 TGGGGTTTTGGGGTTTGGGGTT
1 CGGGG-TTCGGGGTTTGGGGTT
* * *
42971167 TGGGTTTGGGGGTTTGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
* *
42971188 TGGGGTTTGGGGTTT-GGGTT
1 CGGGGTTCGGGGTTTGGGGTT
* **
42971208 TGGGGTTTTGGGTTTGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
* *
42971229 TGGGGTTTGGGG-TTGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
*
42971249 TGGGGTT-GGGGTTTGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
* *
42971269 TGGGGTTTGGGGTTTGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
* *
42971290 TGGGGTTTGGGGTTTGGGGTT
1 CGGGGTTCGGGGTTTGGGGTT
* *
42971311 TGTTGGGTT-TGGGTTT-GGGTT
1 CG--GGGTTCGGGGTTTGGGGTT
* *
42971332 TGGGGTT-TGGGTTT-GGGTT
1 CGGGGTTCGGGGTTTGGGGTT
*
42971351 TGGGGTT-GGGGTTTGGGG
1 CGGGGTTCGGGGTTTGGGG
Statistics
Matches: 532, Mismatches: 23, Indels: 35
0.90 0.04 0.06
Matches are distributed among these distances:
19 81 0.15
20 136 0.26
21 275 0.52
22 35 0.07
23 5 0.01
ACGTcount: A:0.00, C:0.11, G:0.57, T:0.33
Consensus pattern (21 bp):
CGGGGTTCGGGGTTTGGGGTT
Done.