Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 27 of 143
Found at i:8032898 original size:21 final size:21
Alignment explanation
Indices: 8032854--8032902 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
8032844 ACAGTGCAGA
* * *
8032854 CTTCTACTGATACAAGTGAAG
1 CTTCTACTGAAACAAATCAAG
*
8032875 CTTCTACTGAAACAAATCATG
1 CTTCTACTGAAACAAATCAAG
8032896 CTTCTAC
1 CTTCTAC
8032903 CAGTACTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (21 bp):
CTTCTACTGAAACAAATCAAG
Found at i:8037588 original size:10 final size:9
Alignment explanation
Indices: 8037548--8037656 Score: 51
Period size: 9 Copynumber: 11.6 Consensus size: 9
8037538 TGACATGTGA
8037548 AAAAATTAT
1 AAAAATTAT
*
8037557 AAAAA-AAT
1 AAAAATTAT
*
8037565 AAAAATAAAT
1 AAAAAT-TAT
*
8037575 AAAAGTTAT
1 AAAAATTAT
8037584 AAAAATTATT
1 AAAAATTA-T
***
8037594 AATTTTTAAT
1 AAAAATT-AT
*
8037604 ATAAAAATATT
1 A-AAAATTA-T
*
8037615 AAAATTTTATT
1 AAAA-ATTA-T
8037626 AAAAATTAT
1 AAAAATTAT
**
8037635 AAAAATCGT
1 AAAAATTAT
8037644 AAAAA-TAT
1 AAAAATTAT
8037652 AAAAA
1 AAAAA
8037657 AAAATTGTAA
Statistics
Matches: 75, Mismatches: 18, Indels: 15
0.69 0.17 0.14
Matches are distributed among these distances:
8 13 0.17
9 27 0.36
10 22 0.29
11 13 0.17
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:8037609 original size:22 final size:22
Alignment explanation
Indices: 8037581--8037640 Score: 72
Period size: 21 Copynumber: 2.8 Consensus size: 22
8037571 AAATAAAAGT
*
8037581 TATAAAAATTATT-AATTTTTAA
1 TATAAAAATTATTAAAATTTT-A
8037603 TATAAAAA-TATTAAAATTTTA
1 TATAAAAATTATTAAAATTTTA
*
8037624 T-TAAAAATTATAAAAAT
1 TATAAAAATTATTAAAAT
8037641 CGTAAAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 6 0.18
21 14 0.41
22 14 0.41
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TATAAAAATTATTAAAATTTTA
Found at i:8040943 original size:2 final size:2
Alignment explanation
Indices: 8040936--8040992 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
8040926 TATAAAATTT
8040936 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8040978 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
8040993 TGATTAATTG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8041542 original size:17 final size:18
Alignment explanation
Indices: 8041520--8041563 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
8041510 TTTTAATCAA
8041520 ATAAATATAATTTTTA-T
1 ATAAATATAATTTTTATT
*
8041537 ATAAATATGATTTTTATT
1 ATAAATATAATTTTTATT
*
8041555 TTAAATATA
1 ATAAATATA
8041564 CTAATAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
ATAAATATAATTTTTATT
Found at i:8044923 original size:27 final size:27
Alignment explanation
Indices: 8044893--8044948 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
8044883 GAAGACCCCA
*
8044893 AAACTTCATAGCTTCTTCCTTTTCTCT
1 AAACTCCATAGCTTCTTCCTTTTCTCT
8044920 AAACTCCATAGCTTCTTCCTTTTCTCT
1 AAACTCCATAGCTTCTTCCTTTTCTCT
8044947 AA
1 AA
8044949 CCTTTATGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.21, C:0.30, G:0.04, T:0.45
Consensus pattern (27 bp):
AAACTCCATAGCTTCTTCCTTTTCTCT
Found at i:8050051 original size:4 final size:4
Alignment explanation
Indices: 8050027--8050128 Score: 96
Period size: 4 Copynumber: 24.8 Consensus size: 4
8050017 TGTTTTAAAA
* * *
8050027 TTAT TTAG TTAT TTAT CTAT TTAT TTAT TTATT TTATT TTATT TTAT GTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA-T TTA-T TTA-T TTAT TTAT
* * * * * *
8050078 TTAT TTAT TTAG TTAG TTAT TTAC TTAT TTAC TTAC TTCT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
8050126 TTA
1 TTA
8050129 CATCGTAAAA
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
4 69 0.83
5 14 0.17
ACGTcount: A:0.24, C:0.05, G:0.04, T:0.68
Consensus pattern (4 bp):
TTAT
Found at i:8051915 original size:42 final size:41
Alignment explanation
Indices: 8051860--8052091 Score: 196
Period size: 42 Copynumber: 5.5 Consensus size: 41
8051850 AGGGTATATT
*
8051860 AAAGGAAGACTCATGTCTCGGATGAGAATGAGATTATGTTAA
1 AAAGGAAGACTCATGACTCGGATGAGAATGAGATTATGTT-A
* * * * *
8051902 AAACGAAGACTCATGTCTCGAATGAGCATGAGGTTATGTTAA
1 AAAGGAAGACTCATGACTCGGATGAGAATGAGATTATGTT-A
** * * * *
8051944 AAAGGAAGACTTGTGTCTCGAAAAGAGCATGAGATTATGATT-
1 AAAGGAAGACTCATGACTCG-GATGAGAATGAGATTATG-TTA
* * * * * *
8051986 TAAGGAAGACTCATGACTCGGAAAGAGTATGTGGTTATGTTTT
1 AAAGGAAGACTCATGACTCGG-ATGAGAATGAGATTATG-TTA
* * *
8052029 AAAGGAAGACTCATGACTCGACATGAGAATGAGATTACGTTT
1 AAAGGAAGACTCATGACTCG-GATGAGAATGAGATTATGTTA
*
8052071 AAAGGAAGACTTATGACTCGG
1 AAAGGAAGACTCATGACTCGG
8052092 TTGATTATGT
Statistics
Matches: 158, Mismatches: 27, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
42 109 0.69
43 47 0.30
44 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (41 bp):
AAAGGAAGACTCATGACTCGGATGAGAATGAGATTATGTTA
Found at i:8052037 original size:85 final size:84
Alignment explanation
Indices: 8051858--8052091 Score: 265
Period size: 85 Copynumber: 2.8 Consensus size: 84
8051848 TGAGGGTATA
* * * *
8051858 TTAAAGGAAGACTCATGTCTCG-GATGAGAATGAGATTATGTTAAAAACGAAGACTCATGTCTC-
1 TTAAAGGAAGACTCATGTCTCGAAATGAGAATGAGATTATGTT--TAAGGAAGACTCATGACTCG
*
8051921 GAATGAGCATGAGGTTATGTT
64 GAAAGAGCATGAGGTTATGTT
** ** * *
8051942 AAAAAGGAAGACTTGTGTCTCGAAAAGAGCATGAGATTATGATTTAAGGAAGACTCATGACTCGG
1 TTAAAGGAAGACTCATGTCTCGAAATGAGAATGAGATTATG-TTTAAGGAAGACTCATGACTCGG
* *
8052007 AAAGAGTATGTGGTTATGTT
65 AAAGAGCATGAGGTTATGTT
* * * *
8052027 TTAAAGGAAGACTCATGACTCGACATGAGAATGAGATTACGTTTAAAGGAAGACTTATGACTCGG
1 TTAAAGGAAGACTCATGTCTCGAAATGAGAATGAGATTATGTTT-AAGGAAGACTCATGACTCGG
8052092 TTGATTATGT
Statistics
Matches: 123, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
84 37 0.30
85 84 0.68
86 2 0.02
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.27
Consensus pattern (84 bp):
TTAAAGGAAGACTCATGTCTCGAAATGAGAATGAGATTATGTTTAAGGAAGACTCATGACTCGGA
AAGAGCATGAGGTTATGTT
Found at i:8055912 original size:32 final size:32
Alignment explanation
Indices: 8055874--8055937 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
8055864 TTCATGCGTA
*
8055874 AACAAAATATAAATGATTTGTATAGATAATAT
1 AACAAAATATAAAAGATTTGTATAGATAATAT
8055906 AACAAAATATAAAAGATTTGTATAGATAATAT
1 AACAAAATATAAAAGATTTGTATAGATAATAT
8055938 GATAATGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (32 bp):
AACAAAATATAAAAGATTTGTATAGATAATAT
Found at i:8058867 original size:27 final size:28
Alignment explanation
Indices: 8058836--8058896 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
8058826 TAAGATTATT
8058836 ATATAAAAATTT-TC-AATATATAAAAGA
1 ATATAAAAATTTATCAAATAT-TAAAAGA
* * *
8058863 ATATATAAATTTATTAAATATTAAAATA
1 ATATAAAAATTTATCAAATATTAAAAGA
8058891 ATATAA
1 ATATAA
8058897 TATAATATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
27 11 0.39
28 12 0.43
29 5 0.18
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (28 bp):
ATATAAAAATTTATCAAATATTAAAAGA
Found at i:8060463 original size:33 final size:33
Alignment explanation
Indices: 8060412--8060496 Score: 125
Period size: 33 Copynumber: 2.6 Consensus size: 33
8060402 GCCGAAACCG
* * *
8060412 CCAAGAAATCCAAGGAGCTTGCTCTTGAAGCCT
1 CCAAGAAAGCCGATGAGCTTGCTCTTGAAGCCT
*
8060445 CCAAGAAAGCCGATGAGCTTGCTCTTGAAGCTT
1 CCAAGAAAGCCGATGAGCTTGCTCTTGAAGCCT
*
8060478 CCAAGAAGGCCGATGAGCT
1 CCAAGAAAGCCGATGAGCT
8060497 CAAAGTCGCC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.29, C:0.26, G:0.25, T:0.20
Consensus pattern (33 bp):
CCAAGAAAGCCGATGAGCTTGCTCTTGAAGCCT
Found at i:8063234 original size:17 final size:18
Alignment explanation
Indices: 8063212--8063256 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
8063202 CCAAGAAATC
8063212 AAGAAATGGAGAAGAA-G
1 AAGAAATGGAGAAGAAGG
*
8063229 AAGAAAAGGAGAAGAAGG
1 AAGAAATGGAGAAGAAGG
*
8063247 AAAAAATGGA
1 AAGAAATGGA
8063257 ATGAGCTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.04
Consensus pattern (18 bp):
AAGAAATGGAGAAGAAGG
Found at i:8064218 original size:12 final size:12
Alignment explanation
Indices: 8064198--8064237 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
8064188 CTTTTTTCTC
*
8064198 CTTCTTCTTCCT
1 CTTCCTCTTCCT
8064210 CTTCCTCTTCCT
1 CTTCCTCTTCCT
* *
8064222 CTTCCTTTTCTT
1 CTTCCTCTTCCT
8064234 CTTC
1 CTTC
8064238 TATAGAAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.57
Consensus pattern (12 bp):
CTTCCTCTTCCT
Found at i:8064224 original size:18 final size:18
Alignment explanation
Indices: 8064198--8064237 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8064188 CTTTTTTCTC
*
8064198 CTTCTTCTTCCTCTTCCT
1 CTTCCTCTTCCTCTTCCT
* *
8064216 CTTCCTCTTCCTTTTCTT
1 CTTCCTCTTCCTCTTCCT
8064234 CTTC
1 CTTC
8064238 TATAGAAGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.57
Consensus pattern (18 bp):
CTTCCTCTTCCTCTTCCT
Found at i:8064270 original size:21 final size:21
Alignment explanation
Indices: 8064245--8064288 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8064235 TTCTATAGAA
8064245 GAAGA-AAAGGAAGAGGAAGAG
1 GAAGATAAA-GAAGAGGAAGAG
*
8064266 GAAGATAAAGAAGAGGATGAG
1 GAAGATAAAGAAGAGGAAGAG
8064287 GA
1 GA
8064289 TGAGGACGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.55, C:0.00, G:0.41, T:0.05
Consensus pattern (21 bp):
GAAGATAAAGAAGAGGAAGAG
Found at i:8064277 original size:27 final size:26
Alignment explanation
Indices: 8064241--8064334 Score: 82
Period size: 27 Copynumber: 3.4 Consensus size: 26
8064231 CTTCTTCTAT
8064241 AGAAGAAGAAAAGGAAGAGGAAGAGGA
1 AGAA-AAGAAAAGGAAGAGGAAGAGGA
* * *
8064268 AGATAAAGAAGAGGATGAGGATGAGGA
1 AGA-AAAGAAAAGGAAGAGGAAGAGGA
* *
8064295 CGAGAGAAGAAGGAGGAAGAGGAAGAAGG-
1 --AGAAAAGAA-AAGGAAGAGGAAG-AGGA
8064324 AGAAAAGAAAA
1 AGAAAAGAAAA
8064335 AATAGAGATG
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
26 1 0.02
27 30 0.56
28 6 0.11
29 14 0.26
30 3 0.06
ACGTcount: A:0.55, C:0.01, G:0.40, T:0.03
Consensus pattern (26 bp):
AGAAAAGAAAAGGAAGAGGAAGAGGA
Found at i:8064318 original size:6 final size:6
Alignment explanation
Indices: 8064242--8064320 Score: 51
Period size: 6 Copynumber: 13.8 Consensus size: 6
8064232 TTCTTCTATA
* * * *
8064242 GAAGAA GAAAAG GAAGAG GAAGAG GAAGA- TAA-A- GAAGAG GATGAG
1 GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG
* * *
8064287 GATGAG GACGAG AGAAGA- -AGGAG GAAGAG GAAGA
1 GAAGAG GAAGAG -GAAGAG GAAGAG GAAGAG GAAGA
8064321 AGGAGAAAAG
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
4 6 0.10
5 3 0.05
6 45 0.78
7 4 0.07
ACGTcount: A:0.52, C:0.01, G:0.43, T:0.04
Consensus pattern (6 bp):
GAAGAG
Found at i:8064321 original size:16 final size:17
Alignment explanation
Indices: 8064290--8064325 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
8064280 GGATGAGGAT
*
8064290 GAGGACGAGAGAAGAAG
1 GAGGAAGAGAGAAGAAG
8064307 GAGGAAGAG-GAAGAAG
1 GAGGAAGAGAGAAGAAG
8064323 GAG
1 GAG
8064326 AAAAGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.47, C:0.03, G:0.50, T:0.00
Consensus pattern (17 bp):
GAGGAAGAGAGAAGAAG
Found at i:8064435 original size:12 final size:12
Alignment explanation
Indices: 8064415--8064452 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8064405 ATCTTCATTT
8064415 TTCTC-TTCTCC
1 TTCTCTTTCTCC
8064426 TTCTCTTTCTCC
1 TTCTCTTTCTCC
*
8064438 TTCTTTTTCTTCC
1 TTCTCTTTC-TCC
8064451 TT
1 TT
8064453 TACCTCCTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 5 0.21
12 14 0.58
13 5 0.21
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (12 bp):
TTCTCTTTCTCC
Found at i:8064466 original size:24 final size:25
Alignment explanation
Indices: 8064434--8064509 Score: 74
Period size: 21 Copynumber: 3.2 Consensus size: 25
8064424 CCTTCTCTTT
**
8064434 CTCCTTCTTTTTCTTCCTTTACCTC
1 CTCCTTCTTCCTCTTCCTTTACCTC
8064459 CTCC-TCTTCCTCTTCCTTT---TC
1 CTCCTTCTTCCTCTTCCTTTACCTC
8064480 CT-CTTCTTCCTCTTCCTCTT-CCTC
1 CTCCTTCTTCCTCTTCCT-TTACCTC
*
8064504 TTCCTT
1 CTCCTT
8064510 TTCTTTTTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
20 1 0.02
21 17 0.40
22 2 0.05
24 16 0.37
25 7 0.16
ACGTcount: A:0.01, C:0.45, G:0.00, T:0.54
Consensus pattern (25 bp):
CTCCTTCTTCCTCTTCCTTTACCTC
Found at i:8064487 original size:15 final size:15
Alignment explanation
Indices: 8064469--8064500 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8064459 CTCCTCTTCC
*
8064469 TCTTCCTTTTCCTCT
1 TCTTCCTCTTCCTCT
8064484 TCTTCCTCTTCCTCT
1 TCTTCCTCTTCCTCT
8064499 TC
1 TC
8064501 CTCTTCCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (15 bp):
TCTTCCTCTTCCTCT
Found at i:8064514 original size:21 final size:21
Alignment explanation
Indices: 8064457--8064506 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
8064447 TTCCTTTACC
* *
8064457 TCCTCCTCTTCCTCTTCCTTT
1 TCCTCTTCTTCCTCTTCCTCT
8064478 TCCTCTTCTTCCTCTTCCTCT
1 TCCTCTTCTTCCTCTTCCTCT
8064499 TCCTCTTC
1 TCCTCTTC
8064507 CTTTTCTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (21 bp):
TCCTCTTCTTCCTCTTCCTCT
Found at i:8064550 original size:6 final size:6
Alignment explanation
Indices: 8064539--8064617 Score: 51
Period size: 6 Copynumber: 13.8 Consensus size: 6
8064529 AAGAAGAAAA
* * * * *
8064539 GAAGAG GAAGAG GAAGA- TAA-A- GAAGAG GATGAG GATGAG GATGAC
1 GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG
* *
8064584 GACGA- G-AGAAG GAGGAG GAAGAG GAAGAG GAAGA
1 GAAGAG GAAG-AG GAAGAG GAAGAG GAAGAG GAAGA
8064618 AGGAGAAAAG
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
4 4 0.07
5 5 0.08
6 50 0.83
7 1 0.02
ACGTcount: A:0.47, C:0.03, G:0.46, T:0.05
Consensus pattern (6 bp):
GAAGAG
Found at i:8064561 original size:21 final size:20
Alignment explanation
Indices: 8064531--8064573 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
8064521 TTTTGTAAAA
8064531 GAAGAAAAGAAGAGGAAGAG
1 GAAGAAAAGAAGAGGAAGAG
*
8064551 GAAGATAAAGAAGAGGATGAG
1 GAAGA-AAAGAAGAGGAAGAG
8064572 GA
1 GA
8064574 TGAGGATGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.56, C:0.00, G:0.40, T:0.05
Consensus pattern (20 bp):
GAAGAAAAGAAGAGGAAGAG
Found at i:8064757 original size:6 final size:6
Alignment explanation
Indices: 8064737--8064788 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
8064727 TCTCTTTCTC
* * * * *
8064737 CTTCTT CTTCTT CTTCCT CTTCTT TTTCCT CTTCCT CTTCCT TTTCCT
1 CTTCCT CTTCCT CTTCCT CTTCCT CTTCCT CTTCCT CTTCCT CTTCCT
8064785 CTTC
1 CTTC
8064789 NNNNNNNNNN
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (6 bp):
CTTCCT
Found at i:8064760 original size:12 final size:12
Alignment explanation
Indices: 8064717--8064788 Score: 65
Period size: 12 Copynumber: 6.0 Consensus size: 12
8064707 TCATTTTTTT
*
8064717 CTCTTCTCCTT-
1 CTCTTCTTCTTC
*
8064728 CTCTTTCTCCTTC
1 CTC-TTCTTCTTC
*
8064741 TTCTTCTTCTTC
1 CTCTTCTTCTTC
*
8064753 CTCTTCTTTTTC
1 CTCTTCTTCTTC
*
8064765 CTCTTCCTCTTC
1 CTCTTCTTCTTC
* *
8064777 CTTTTCCTCTTC
1 CTCTTCTTCTTC
8064789 NNNNNNNNNN
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
11 3 0.06
12 47 0.90
13 2 0.04
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (12 bp):
CTCTTCTTCTTC
Found at i:8064769 original size:18 final size:18
Alignment explanation
Indices: 8064737--8064788 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
8064727 TCTCTTTCTC
* *
8064737 CTTCTTCTTCTTCTTCCT
1 CTTCTTTTTCCTCTTCCT
8064755 CTTCTTTTTCCTCTTCCT
1 CTTCTTTTTCCTCTTCCT
*
8064773 CTTCCTTTTCCTCTTC
1 CTTCTTTTTCCTCTTC
8064789 NNNNNNNNNN
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (18 bp):
CTTCTTTTTCCTCTTCCT
Found at i:8065115 original size:12 final size:12
Alignment explanation
Indices: 8065080--8065115 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
8065070 TTCCTTTTTC
*
8065080 TTTCCTCTTCCT
1 TTTCCTCTTCTT
8065092 TTTCCTCTTCTT
1 TTTCCTCTTCTT
*
8065104 TTTCCTCCTCTT
1 TTTCCTCTTCTT
8065116 CCCTTTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (12 bp):
TTTCCTCTTCTT
Found at i:8065117 original size:21 final size:21
Alignment explanation
Indices: 8065088--8065147 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
8065078 TCTTTCCTCT
8065088 TCCTTTTCCTCTTCTTTTTCC
1 TCCTTTTCCTCTTCTTTTTCC
* *
8065109 TCCTCTTCC-CTTTTTTCTTCC
1 TCCTTTTCCTCTTCTTT-TTCC
8065130 TCCTTTTCCTCTTCTTTT
1 TCCTTTTCCTCTTCTTTT
8065148 GAAGAAGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 6 0.18
21 21 0.64
22 6 0.18
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (21 bp):
TCCTTTTCCTCTTCTTTTTCC
Found at i:8065127 original size:27 final size:28
Alignment explanation
Indices: 8065064--8065128 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 28
8065054 CTTCTTTTAA
*
8065064 TTCTTCTTCCTTTTTCTTTCCTCTTCCTT
1 TTCTTCTT-CTTTTTCTCTCCTCTTCCTT
*
8065093 TTCCTCTTCTTTTTC-CTCCTCTTCCCTT
1 TTCTTCTTCTTTTTCTCTCCTCTT-CCTT
8065121 TT-TTCTTC
1 TTCTTCTTC
8065129 CTCCTTTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 12 0.38
28 13 0.41
29 7 0.22
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (28 bp):
TTCTTCTTCTTTTTCTCTCCTCTTCCTT
Found at i:8065508 original size:6 final size:6
Alignment explanation
Indices: 8065499--8065533 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
8065489 TTTTTCTTCC
* *
8065499 TCCTCT TCCTCT TCCTTT TCCTCT TCCTCC TCCTC
1 TCCTCT TCCTCT TCCTCT TCCTCT TCCTCT TCCTC
8065534 GAAGAGGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (6 bp):
TCCTCT
Found at i:8066034 original size:13 final size:13
Alignment explanation
Indices: 8066018--8066042 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8066008 ATTTTGTAGA
8066018 AATAATCAAAACC
1 AATAATCAAAACC
8066031 AATAATCAAAAC
1 AATAATCAAAAC
8066043 TGAATCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.20, G:0.00, T:0.16
Consensus pattern (13 bp):
AATAATCAAAACC
Found at i:8067976 original size:57 final size:58
Alignment explanation
Indices: 8067876--8067999 Score: 157
Period size: 58 Copynumber: 2.1 Consensus size: 58
8067866 CAAAAACGGT
8067876 GAAAATGAAGAAATGAGAAATATTTGAATATGATTATTGTTTTCTCCAAAATG-AAAAC
1 GAAAATGAAGAAAT-AGAAATATTTGAATATGATTATTGTTTTCTCCAAAATGAAAAAC
* * *
8067934 GAAAATGGAGAAAT-GAAATCATTTGGAA-ATTATTA-TGATTTTCTCCAAAATGAAAAAT
1 GAAAATGAAGAAATAGAAAT-ATTT-GAATATGATTATTG-TTTTCTCCAAAATGAAAAAC
8067992 GAAAATGA
1 GAAAATGA
8068000 CCTTGAAATG
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
56 7 0.12
57 24 0.41
58 27 0.47
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.30
Consensus pattern (58 bp):
GAAAATGAAGAAATAGAAATATTTGAATATGATTATTGTTTTCTCCAAAATGAAAAAC
Found at i:8070998 original size:67 final size:68
Alignment explanation
Indices: 8070882--8071010 Score: 154
Period size: 67 Copynumber: 1.9 Consensus size: 68
8070872 TAGTTATTAA
* * * *
8070882 TAAATTTATTTAAGAAAATTATTTTAATAAAATTGTAACTCCTACTTATAAGTATGACAAATGAT
1 TAAATTTATTTAACAAAATTATTTTAATAAAATTGAAAATCCTACTTATAAATATGACAAATGAT
8070947 AAC
66 AAC
* ** * *
8070950 TAAATTTATTTAACCAAA-TATTTTAATAAAATT-AAATATTTTATTTATAAATATGATAAAT
1 TAAATTTATTTAACAAAATTATTTTAATAAAATTGAAA-ATCCTACTTATAAATATGACAAAT
8071011 CTTATAAATA
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
66 2 0.04
67 33 0.65
68 16 0.31
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.42
Consensus pattern (68 bp):
TAAATTTATTTAACAAAATTATTTTAATAAAATTGAAAATCCTACTTATAAATATGACAAATGAT
AAC
Found at i:8074141 original size:4 final size:4
Alignment explanation
Indices: 8074134--8074160 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8074124 TATTTAACAT
8074134 TTAA TTAA TTAA TTAA TTAA TTAA TTA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTA
8074161 TATCAATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:8079335 original size:22 final size:23
Alignment explanation
Indices: 8079305--8079347 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8079295 AAATTAAAAA
*
8079305 AATCAAATTAAC-AATCAAAATT
1 AATCAAATTAACTAAGCAAAATT
*
8079327 AATCCAATTAACTAAGCAAAA
1 AATCAAATTAACTAAGCAAAA
8079348 AATTAACTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.58, C:0.16, G:0.02, T:0.23
Consensus pattern (23 bp):
AATCAAATTAACTAAGCAAAATT
Found at i:8082020 original size:20 final size:19
Alignment explanation
Indices: 8081995--8082085 Score: 73
Period size: 18 Copynumber: 4.8 Consensus size: 19
8081985 AATTTCAAAA
* *
8081995 TATTAAAATTGATATAAATT
1 TATTAAAATT-ATAAAAACT
8082015 TATTAAAATTATAAAAACT
1 TATTAAAATTATAAAAACT
*
8082034 TA-TAAAAATATAAAAACT
1 TATTAAAATTATAAAAACT
* * *
8082052 CTAAT-AGATTATAAAAA-A
1 -TATTAAAATTATAAAAACT
8082070 TA-TAAAATTAATAAAA
1 TATTAAAATT-ATAAAA
8082086 TTTATTTAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
16 1 0.02
17 6 0.10
18 21 0.35
19 21 0.35
20 11 0.18
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (19 bp):
TATTAAAATTATAAAAACT
Found at i:8082041 original size:19 final size:19
Alignment explanation
Indices: 8081999--8082085 Score: 65
Period size: 19 Copynumber: 4.6 Consensus size: 19
8081989 TCAAAATATT
* * *
8081999 AAAATTGATATAAATTTATT
1 AAAATT-ATAAAAACTTATA
8082019 AAAATTATAAAAACTTATA
1 AAAATTATAAAAACTTATA
8082038 AAAA-TATAAAAACTCTA-A
1 AAAATTATAAAAACT-TATA
* * *
8082056 TAGATTATAAAAA-ATAT-
1 AAAATTATAAAAACTTATA
8082073 AAAATTAATAAAA
1 AAAATT-ATAAAA
8082086 TTTATTTAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
17 6 0.11
18 19 0.35
19 24 0.44
20 6 0.11
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.32
Consensus pattern (19 bp):
AAAATTATAAAAACTTATA
Found at i:8082090 original size:27 final size:25
Alignment explanation
Indices: 8082018--8082087 Score: 63
Period size: 27 Copynumber: 2.6 Consensus size: 25
8082008 ATAAATTTAT
8082018 TAAAATT-ATAAAAACTTATAAAAATA
1 TAAAATTAAT-AAAA-TTATAAAAATA
*
8082044 TAAAAACTCTAAT-AGATTATAAAAAATA
1 T-AAAA-T-TAATAAAATTAT-AAAAATA
8082072 TAAAATTAATAAAATT
1 TAAAATTAATAAAATT
8082088 TATTTAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
25 4 0.11
26 6 0.17
27 12 0.33
28 11 0.31
29 1 0.03
30 2 0.06
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.31
Consensus pattern (25 bp):
TAAAATTAATAAAATTATAAAAATA
Found at i:8082193 original size:20 final size:20
Alignment explanation
Indices: 8082129--8082193 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 20
8082119 TTAGAATTCT
*
8082129 TAAAAAGTGATA-AAATTGTA
1 TAAAAATTGATATAAATT-TA
* *
8082149 -AAAAAAT-ATATAAA-ATA
1 TAAAAATTGATATAAATTTA
*
8082166 TTAAAATTGATATAAATTTA
1 TAAAAATTGATATAAATTTA
8082186 TAAAAATT
1 TAAAAATT
8082194 TTAAAAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
17 2 0.06
18 8 0.23
19 16 0.46
20 9 0.26
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (20 bp):
TAAAAATTGATATAAATTTA
Found at i:8082476 original size:10 final size:9
Alignment explanation
Indices: 8082464--8082697 Score: 145
Period size: 9 Copynumber: 24.8 Consensus size: 9
8082454 TTTTATGATT
8082464 TTTTTATAA
1 TTTTTATAA
8082473 TTTTTATAA
1 TTTTTATAA
*
8082482 GTTTATATCAA
1 -TTTTTAT-AA
* *
8082493 TTTTAATAC
1 TTTTTATAA
*
8082502 TTTTTATTA
1 TTTTTATAA
8082511 TTTTTATAGAA
1 TTTTTAT--AA
*
8082522 TTTTAATACA
1 TTTTTATA-A
8082532 TTTTTATAAA
1 TTTTTAT-AA
*
8082542 ATTTTA-AA
1 TTTTTATAA
*
8082550 TATTCTATATA
1 T-TTTTATA-A
8082561 TGTTTTATTAA
1 T-TTTTA-TAA
8082572 -TTTTATAAA
1 TTTTTAT-AA
8082581 TTTTTATAA
1 TTTTTATAA
*
8082590 TTTATTA-CA
1 TTT-TTATAA
*
8082599 TTTATTACAA
1 TTT-TTATAA
8082609 TTTTTATAA
1 TTTTTATAA
8082618 TTTTTATAAA
1 TTTTTAT-AA
*
8082628 TTTATATCAA
1 TTTTTAT-AA
8082638 TTTTTATATA
1 TTTTTATA-A
*
8082648 TTTTAAT-A
1 TTTTTATAA
8082656 TTTTTA-AA
1 TTTTTATAA
* *
8082664 TTTTAATAT
1 TTTTTATAA
*
8082673 TTTTTATAT
1 TTTTTATAA
* *
8082682 TTTTTCTAT
1 TTTTTATAA
8082691 TTTTTAT
1 TTTTTAT
8082698 TAAAAATTCT
Statistics
Matches: 179, Mismatches: 28, Indels: 36
0.74 0.12 0.15
Matches are distributed among these distances:
8 15 0.08
9 84 0.47
10 61 0.34
11 17 0.09
12 2 0.01
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:8082506 original size:29 final size:29
Alignment explanation
Indices: 8082464--8082680 Score: 104
Period size: 29 Copynumber: 7.6 Consensus size: 29
8082454 TTTTATGATT
* *
8082464 TTTTTATAATTTTTATAAGTTTATAT-CAA
1 TTTTAATACTTTTTATAA-TTTATATACAA
* * *
8082493 TTTTAATACTTTTTATTATTTTTATAGAA
1 TTTTAATACTTTTTATAATTTATATACAA
8082522 TTTTAATACATTTTTATAAAATTT-TA-A-ATA
1 TTTTAATAC-TTTTTAT--AATTTATATACA-A
*
8082552 TTCTATATA-TGTTTTATTAATTT-TATA-AA
1 TTTTA-ATACT-TTTTA-TAATTTATATACAA
* * *
8082581 TTTTTATAATTTATTA-CATTTAT-TACAA
1 TTTTAATACTTT-TTATAATTTATATACAA
* *
8082609 TTTTTATAATTTTTATAAATTTATAT-CAA
1 TTTTAATACTTTTTAT-AATTTATATACAA
*
8082638 TTTTTATA-TATTTTA-ATATTT-T-TA-AA
1 TTTTAATACT-TTTTATA-ATTTATATACAA
*
8082664 TTTTAATATTTTTTATA
1 TTTTAATACTTTTTATA
8082681 TTTTTTCTAT
Statistics
Matches: 155, Mismatches: 12, Indels: 44
0.73 0.06 0.21
Matches are distributed among these distances:
26 15 0.10
27 13 0.08
28 31 0.20
29 65 0.42
30 21 0.14
31 6 0.04
32 4 0.03
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (29 bp):
TTTTAATACTTTTTATAATTTATATACAA
Found at i:8082656 original size:22 final size:20
Alignment explanation
Indices: 8082563--8082650 Score: 71
Period size: 19 Copynumber: 4.6 Consensus size: 20
8082553 TCTATATATG
* *
8082563 TTTTATTAATTT-TATAAAT
1 TTTTATAAATTTATATCAAT
8082582 TTTTAT-AATTTAT-T-ACAT
1 TTTTATAAATTTATATCA-AT
* *
8082600 TTATTA-CAATTTTTAT-AAT
1 TT-TTATAAATTTATATCAAT
8082619 TTTTATAAATTTATATCAAT
1 TTTTATAAATTTATATCAAT
*
8082639 TTTTATATATTT
1 TTTTATAAATTT
8082651 TAATATTTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
17 1 0.02
18 13 0.22
19 28 0.48
20 16 0.28
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTATAAATTTATATCAAT
Found at i:8082668 original size:16 final size:18
Alignment explanation
Indices: 8082637--8082684 Score: 75
Period size: 16 Copynumber: 2.8 Consensus size: 18
8082627 ATTTATATCA
8082637 ATTTTTATATATTTTAAT
1 ATTTTTATATATTTTAAT
8082655 ATTTTTA-A-ATTTTAAT
1 ATTTTTATATATTTTAAT
8082671 ATTTTT-TATATTTT
1 ATTTTTATATATTTT
8082685 TTCTATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 15 0.54
17 6 0.21
18 7 0.25
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTATATATTTTAAT
Found at i:8088375 original size:30 final size:31
Alignment explanation
Indices: 8088341--8088402 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
8088331 AAACTTTTTT
* *
8088341 ACTTTCCCTCCAAAATTTTTACTTTC-TCCC
1 ACTTTCCCTCCAAAAATTTTACTCTCATCCC
8088371 ACTTTCCCTCCAAAAATTTTACTCTCATCCC
1 ACTTTCCCTCCAAAAATTTTACTCTCATCCC
8088402 A
1 A
8088403 TCCCATCCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.24, C:0.37, G:0.00, T:0.39
Consensus pattern (31 bp):
ACTTTCCCTCCAAAAATTTTACTCTCATCCC
Found at i:8088632 original size:24 final size:23
Alignment explanation
Indices: 8088600--8088646 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
8088590 CCCGGCTCAG
8088600 ATTTATAATAATAATTTTATTTTT
1 ATTTATAATAATAATTTT-TTTTT
* *
8088624 ATTTTTAATACTAATTTTTTTTT
1 ATTTATAATAATAATTTTTTTTT
8088647 GCTTGTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (23 bp):
ATTTATAATAATAATTTTTTTTT
Found at i:8089363 original size:41 final size:42
Alignment explanation
Indices: 8089300--8089379 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 42
8089290 ACTTATTGTA
* * *
8089300 TTTTCAATTCGTTTGTTGTTTTACGAATTGTTTTAATATCGC
1 TTTTCAATTCGTTTGGTATTTTAAGAATTGTTTTAATATCGC
* * *
8089342 TTTT-AATTTGTTTGGTATTTTAATATTTGTTTTAATAT
1 TTTTCAATTCGTTTGGTATTTTAAGAATTGTTTTAATAT
8089380 TTTTAAGTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
41 28 0.88
42 4 0.12
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.60
Consensus pattern (42 bp):
TTTTCAATTCGTTTGGTATTTTAAGAATTGTTTTAATATCGC
Found at i:8094263 original size:41 final size:41
Alignment explanation
Indices: 8094149--8094306 Score: 192
Period size: 41 Copynumber: 3.9 Consensus size: 41
8094139 GGATAGAAAA
* * **
8094149 CGCCGCAAAAGGT-AGAGCAATAGCGGCGTTTATGGTGAAG
1 CGCCGCTAAAGGTCAGAGCAATAGCGGCGCTTATGGCCAAG
* *
8094189 CGCCGTTAAAGGTCAGAGCAATAGCGGCGCTTATGGCCTAG
1 CGCCGCTAAAGGTCAGAGCAATAGCGGCGCTTATGGCCAAG
* * *
8094230 CGCCGCTAAAGGTCATAGCAATAGCGGCACTTATGACCAAG
1 CGCCGCTAAAGGTCAGAGCAATAGCGGCGCTTATGGCCAAG
* * * *
8094271 CGCCGCTAAAAGTCAAAGCAATAGTGACGCTTATGG
1 CGCCGCTAAAGGTCAGAGCAATAGCGGCGCTTATGG
8094307 GAAAAACGCC
Statistics
Matches: 100, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 11 0.11
41 89 0.89
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.18
Consensus pattern (41 bp):
CGCCGCTAAAGGTCAGAGCAATAGCGGCGCTTATGGCCAAG
Found at i:8099682 original size:86 final size:84
Alignment explanation
Indices: 8099538--8099741 Score: 275
Period size: 86 Copynumber: 2.4 Consensus size: 84
8099528 GTGTTTGTGG
* *
8099538 GAAAAATGC-CGCTAAAGACCATGTTCTTTAGCGGCGTTTGCGGGAAAAGTGCCACTAAAGACCA
1 GAAAAA-GCGCGCTAAAGACCATGTTCTTTAGCGGCGTTTGCGGAAAAAGCGCCACTAAAGACCA
*
8099602 TGTTCTTTAGCGGTACTTGT
65 TGTTCTTTAGCGGCACTTGT
* * *
8099622 GAAATAAGCGTCGCTAAAGACCATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGACC
1 GAAA-AAGCG-CGCTAAAGACCATGTTCTTTAGCGGCGTTTGCGGAAAAAGCGCCACTAAAGACC
* *
8099687 ATGTTCTTTAGTGGCATTTGT
64 ATGTTCTTTAGCGGCACTTGT
* *
8099708 GAGAAAGCGCTGCTAAAGACCATGTTCTATAGCG
1 GAAAAAGCGC-GCTAAAGACCATGTTCTTTAGCG
8099742 ACATTTTTCC
Statistics
Matches: 105, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
84 7 0.07
85 28 0.27
86 70 0.67
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (84 bp):
GAAAAAGCGCGCTAAAGACCATGTTCTTTAGCGGCGTTTGCGGAAAAAGCGCCACTAAAGACCAT
GTTCTTTAGCGGCACTTGT
Found at i:8099747 original size:42 final size:42
Alignment explanation
Indices: 8099545--8099747 Score: 244
Period size: 43 Copynumber: 4.8 Consensus size: 42
8099535 TGGGAAAAAT
* * * *
8099545 GCCGCTAAAGACCATGTTCTTTAGCGGCGTTTGCGGGAAAAGT
1 GCCGCTAAAGACCATGTTCTTTAGCGGCATTTG-TGAAAAAGC
* * *
8099588 GCCACTAAAGACCATGTTCTTTAGCGGTACTTGTGAAATAAGC
1 GCCGCTAAAGACCATGTTCTTTAGCGGCATTTGTGAAA-AAGC
* * *
8099631 GTCGCTAAAGACCATGATCTTTAGCGGCGTTTGTGGAAAAAGC
1 GCCGCTAAAGACCATGTTCTTTAGCGGCATTTGT-GAAAAAGC
* *
8099674 GCCGCTAAAGACCATGTTCTTTAGTGGCATTTGTGAGAAAGC
1 GCCGCTAAAGACCATGTTCTTTAGCGGCATTTGTGAAAAAGC
* * *
8099716 GCTGCTAAAGACCATGTTCTATAGCGACATTT
1 GCCGCTAAAGACCATGTTCTTTAGCGGCATTT
8099748 TTCCTCATAA
Statistics
Matches: 136, Mismatches: 22, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
42 38 0.28
43 94 0.69
44 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (42 bp):
GCCGCTAAAGACCATGTTCTTTAGCGGCATTTGTGAAAAAGC
Found at i:8100223 original size:20 final size:20
Alignment explanation
Indices: 8100198--8100237 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8100188 TGGAAAATAA
* *
8100198 TTTTTGAAAATTAGATTGAT
1 TTTTTGAAAAATAAATTGAT
8100218 TTTTTGAAAAATAAATTGAT
1 TTTTTGAAAAATAAATTGAT
8100238 ACTTTTTGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTTTGAAAAATAAATTGAT
Found at i:8100243 original size:21 final size:20
Alignment explanation
Indices: 8100199--8100243 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
8100189 GGAAAATAAT
* * *
8100199 TTTTGAAAATTAGATTGATT
1 TTTTGAAAAATAAATTGATC
8100219 TTTTGAAAAATAAATTGATAC
1 TTTTGAAAAATAAATTGAT-C
8100240 TTTT
1 TTTT
8100244 TGGTGTTTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (20 bp):
TTTTGAAAAATAAATTGATC
Found at i:8100422 original size:18 final size:17
Alignment explanation
Indices: 8100399--8100436 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
8100389 AATTGAAATT
8100399 TATTTTATAATAATATAA
1 TATTTTATAATAAT-TAA
*
8100417 TATTTTGTAATAATTAA
1 TATTTTATAATAATTAA
8100434 TAT
1 TAT
8100437 CATATATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TATTTTATAATAATTAA
Found at i:8107260 original size:18 final size:18
Alignment explanation
Indices: 8107218--8107260 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8107208 TCACCAAACC
* *
8107218 TTTTCTCTCTCTTCTTTT
1 TTTTCTTTCTCTTCTTGT
*
8107236 TTTTCTTTCTTTTCTTGT
1 TTTTCTTTCTCTTCTTGT
8107254 TTTTCTT
1 TTTTCTT
8107261 ATGTTTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (18 bp):
TTTTCTTTCTCTTCTTGT
Found at i:8111022 original size:17 final size:20
Alignment explanation
Indices: 8110985--8111022 Score: 55
Period size: 17 Copynumber: 2.0 Consensus size: 20
8110975 AAAAAATCTA
8110985 AATATATTTATTTATAAATT
1 AATATATTTATTTATAAATT
8111005 AATA-ATTT-TTTA-AAATT
1 AATATATTTATTTATAAATT
8111022 A
1 A
8111023 CAAAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
18 4 0.22
19 4 0.22
20 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
AATATATTTATTTATAAATT
Found at i:8116669 original size:4 final size:4
Alignment explanation
Indices: 8116660--8116712 Score: 63
Period size: 4 Copynumber: 13.2 Consensus size: 4
8116650 AAATAAACGG
* * *
8116660 GAAA GAAA GAAA GAAA GAAA GAAG GAGAG GAAA GAAA G-AA GAAG GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GA-AA GAAA GAAA GAAA GAAA GAAA
8116708 GAAA G
1 GAAA G
8116713 GTAATGTGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
3 3 0.07
4 36 0.84
5 4 0.09
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:8116694 original size:17 final size:15
Alignment explanation
Indices: 8116660--8116712 Score: 70
Period size: 15 Copynumber: 3.3 Consensus size: 15
8116650 AAATAAACGG
*
8116660 GAAAGAAAGAAAGAAA
1 GAAAG-AAGAAGGAAA
8116676 GAAAGAAGGAGAGGAAA
1 GAAAGAA-GA-AGGAAA
8116693 GAAAGAAGAAGGAAA
1 GAAAGAAGAAGGAAA
8116708 GAAAG
1 GAAAG
8116713 GTAATGTGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
15 13 0.38
16 9 0.26
17 12 0.35
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (15 bp):
GAAAGAAGAAGGAAA
Found at i:8120320 original size:45 final size:45
Alignment explanation
Indices: 8120256--8120347 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
8120246 GGGAGGAGTA
* *
8120256 GAGTATTGCGGTGGCTCGTCAAAATGAGGGTGATATCCTTGGCTT
1 GAGTATTGCGGTGGCTCGTCAAAATGAGGCTAATATCCTTGGCTT
*
8120301 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTAATATCCTTGGCTT
1 GAGTATTGCGGTGGCTCGTCAAAATGAGGCTAATATCCTTGGCTT
8120346 GA
1 GA
8120348 TGAGCTATGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (45 bp):
GAGTATTGCGGTGGCTCGTCAAAATGAGGCTAATATCCTTGGCTT
Found at i:8122172 original size:47 final size:47
Alignment explanation
Indices: 8122121--8122210 Score: 119
Period size: 47 Copynumber: 1.9 Consensus size: 47
8122111 CAATACATAA
*
8122121 ATTTACCAATATAATACAAAA-ATAATAATTAAATACCAAAATGAGTT
1 ATTTACCAAAATAATACAAAATAT-ATAATTAAATACCAAAATGAGTT
* * * *
8122168 ATTTACTAAAATGATACAAAATATATATTTATATACCAAAATG
1 ATTTACCAAAATAATACAAAATATATAATTAAATACCAAAATG
8122211 GTATCCACAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
47 35 0.95
48 2 0.05
ACGTcount: A:0.53, C:0.10, G:0.04, T:0.32
Consensus pattern (47 bp):
ATTTACCAAAATAATACAAAATATATAATTAAATACCAAAATGAGTT
Found at i:8122314 original size:16 final size:16
Alignment explanation
Indices: 8122293--8122342 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
8122283 TGATGGAGAT
8122293 ATTATTTTGATAATTA
1 ATTATTTTGATAATTA
*
8122309 ATTATTTT-TTAAATT-
1 ATTATTTTGAT-AATTA
*
8122324 A-TATTTTGGTAATTA
1 ATTATTTTGATAATTA
8122339 ATTA
1 ATTA
8122343 GCTATGTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 10 0.36
15 4 0.14
16 14 0.50
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (16 bp):
ATTATTTTGATAATTA
Found at i:8122912 original size:20 final size:21
Alignment explanation
Indices: 8122887--8122929 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
8122877 TACTTACTAC
8122887 TACTAAC-AACAAAATAAAAT
1 TACTAACTAACAAAATAAAAT
*
8122907 TACTAACTAACAAAATTAAAT
1 TACTAACTAACAAAATAAAAT
8122928 TA
1 TA
8122930 AAGTAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (21 bp):
TACTAACTAACAAAATAAAAT
Found at i:8123052 original size:21 final size:20
Alignment explanation
Indices: 8123023--8123062 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8123013 CAAATTAATT
*
8123023 AAAAATTAAATTAAACAAAA
1 AAAAATTAAAATAAACAAAA
*
8123043 AAAAACTTAAAATAATCAAA
1 AAAAA-TTAAAATAAACAAA
8123063 TTAACTAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.20
Consensus pattern (20 bp):
AAAAATTAAAATAAACAAAA
Found at i:8123299 original size:4 final size:4
Alignment explanation
Indices: 8123273--8123324 Score: 54
Period size: 4 Copynumber: 13.2 Consensus size: 4
8123263 AAACACATTA
* * *
8123273 CTTT -TTT CTTT TTTT CCTT CTTT CTTT CTTT CTCTT TTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT-TT CTTT CTTT CTTT
8123321 -TTT C
1 CTTT C
8123325 CTTCAAATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
3 6 0.15
4 30 0.77
5 3 0.08
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
CTTT
Found at i:8130868 original size:3 final size:3
Alignment explanation
Indices: 8130849--8130912 Score: 60
Period size: 3 Copynumber: 20.7 Consensus size: 3
8130839 AATAAAACAG
* *
8130849 AAT AAT ATAT AAA AAT AAT AAT AAT GGA- AAT AAGT AAT ATAT AA- AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT -AAT AAT AA-T AAT A-AT AAT AAT
8130896 AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
8130913 AACAAAATAA
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
2 3 0.06
3 38 0.75
4 10 0.20
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:8130872 original size:34 final size:34
Alignment explanation
Indices: 8130825--8130965 Score: 89
Period size: 37 Copynumber: 4.1 Consensus size: 34
8130815 TAGCAATTCT
*
8130825 AAAATAAGAAATAAAATAAAACAGAATAATATAT-A
1 AAAATAA-TAATAAAATAAAACA-AATAATATATAA
* * *
8130860 AAAATAATAAT--AATGGAAATAAGTAATATATAA
1 AAAATAATAATAAAAT-AAAACAAATAATATATAA
8130893 AATAATAATAATAATAATAAAACAAAATAA-ACCTA-AA
1 AA-AATAATAATAA-AATAAAAC-AAATAATA--TATAA
* *
8130930 AAAACAATATAATAAATTAAAA-AAATAATA-ATAA
1 AAAA-TA-ATAATAAAATAAAACAAATAATATATAA
8130964 AA
1 AA
8130966 TAAGGATAAA
Statistics
Matches: 84, Mismatches: 9, Indels: 27
0.70 0.08 0.22
Matches are distributed among these distances:
32 12 0.14
33 8 0.10
34 16 0.19
35 13 0.15
36 7 0.08
37 19 0.23
38 9 0.11
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.23
Consensus pattern (34 bp):
AAAATAATAATAAAATAAAACAAATAATATATAA
Found at i:8130881 original size:15 final size:14
Alignment explanation
Indices: 8130849--8130997 Score: 74
Period size: 15 Copynumber: 10.3 Consensus size: 14
8130839 AATAAAACAG
8130849 AATAATATATAAAAAT
1 AATAATA-AT-AAAAT
*
8130865 AATAATAATGGAAAT
1 AATAATAAT-AAAAT
8130880 AAGTAATATATAAAAT
1 AA-TAATA-ATAAAAT
8130896 AATAATAATAATAAT
1 AATAATAATAA-AAT
* * *
8130911 AAAACAAAATAAACCT
1 AATA-ATAATAAA-AT
* * *
8130927 AA-AAAAACAATAT
1 AATAATAATAAAAT
* *
8130940 AATAA-ATTAAAAA
1 AATAATAATAAAAT
8130953 AATAATAATAAAAT
1 AATAATAATAAAAT
**
8130967 AAGGATAAATAAAGA-
1 AATAAT-AATAAA-AT
8130982 AATAA-AATAAAA-
1 AATAATAATAAAAT
8130994 AATA
1 AATA
8130998 GAGAAAAGGG
Statistics
Matches: 105, Mismatches: 19, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
12 5 0.05
13 18 0.17
14 22 0.21
15 30 0.29
16 28 0.27
17 2 0.02
ACGTcount: A:0.70, C:0.03, G:0.04, T:0.23
Consensus pattern (14 bp):
AATAATAATAAAAT
Found at i:8130943 original size:22 final size:21
Alignment explanation
Indices: 8130918--8130959 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8130908 AATAAAACAA
8130918 AATAAACCTAAAAAAACAATAT
1 AATAAA-CTAAAAAAACAATAT
* *
8130940 AATAAATTAAAAAAATAATA
1 AATAAACTAAAAAAACAATA
8130960 ATAAAATAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (21 bp):
AATAAACTAAAAAAACAATAT
Found at i:8131002 original size:20 final size:22
Alignment explanation
Indices: 8130959--8131003 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
8130949 AAAAAATAAT
8130959 AATAAAATAAGGATAAATAAAGA
1 AATAAAATAA-GATAAATAAAGA
*
8130982 AATAAAATAA-A-AAATAGAGA
1 AATAAAATAAGATAAATAAAGA
8131002 AA
1 AA
8131004 AGGGGAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
21 1 0.05
23 10 0.48
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (22 bp):
AATAAAATAAGATAAATAAAGA
Found at i:8132091 original size:7 final size:8
Alignment explanation
Indices: 8132072--8132101 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
8132062 TGTATGAATT
8132072 TTTTTTCA
1 TTTTTTCA
*
8132080 TTTTTTTA
1 TTTTTTCA
8132088 TTTTTTCA
1 TTTTTTCA
8132096 TTTTTT
1 TTTTTT
8132102 TAAGTGACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTTCA
Found at i:8132093 original size:16 final size:16
Alignment explanation
Indices: 8132072--8132103 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8132062 TGTATGAATT
8132072 TTTTTTCATTTTTTTA
1 TTTTTTCATTTTTTTA
8132088 TTTTTTCATTTTTTTA
1 TTTTTTCATTTTTTTA
8132104 AGTGACAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTTCATTTTTTTA
Found at i:8139595 original size:23 final size:23
Alignment explanation
Indices: 8139545--8139595 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
8139535 TCAACTTGAA
8139545 TTTTTCTCTGCTTGAATAGCACG
1 TTTTTCTCTGCTTGAATAGCACG
* *
8139568 ATTTTCTCTGCTTGAATAGCTCG
1 TTTTTCTCTGCTTGAATAGCACG
8139591 TTTTT
1 TTTTT
8139596 TCCCTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.49
Consensus pattern (23 bp):
TTTTTCTCTGCTTGAATAGCACG
Found at i:8139629 original size:19 final size:19
Alignment explanation
Indices: 8139593--8139628 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8139583 ATAGCTCGTT
8139593 TTTTCCCTTTCTTCTTTTC
1 TTTTCCCTTTCTTCTTTTC
*
8139612 TTTTGCCTTTCTT-TTTT
1 TTTTCCCTTTCTTCTTTT
8139629 TGGTTTCTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.00, C:0.25, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTTCCCTTTCTTCTTTTC
Found at i:8162873 original size:16 final size:16
Alignment explanation
Indices: 8162828--8162873 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
8162818 TCCGGGTTTG
*
8162828 TAAGTTTGAAAAAATT
1 TAAGTTTGAAAAAGTT
*
8162844 CAAGTTT-AGAAAAGTT
1 TAAGTTTGA-AAAAGTT
8162860 TAAGTTTGAAAAAG
1 TAAGTTTGAAAAAG
8162874 CTCAAATTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 1 0.04
16 23 0.92
17 1 0.04
ACGTcount: A:0.48, C:0.02, G:0.17, T:0.33
Consensus pattern (16 bp):
TAAGTTTGAAAAAGTT
Found at i:8163353 original size:42 final size:43
Alignment explanation
Indices: 8163238--8163367 Score: 127
Period size: 42 Copynumber: 3.0 Consensus size: 43
8163228 AATATAATAA
8163238 ATTAGTATGTTATTAATACATAAAATAATAATATAATATATATAACT
1 ATTAGTA--TTATTAATACATAAAATAATAATAT-AT-TATATAACT
* * * * * **
8163285 ATTACTAATACTAACACATAATATAATAATATATTATA-ATGT
1 ATTAGTATTATTAATACATAAAATAATAATATATTATATAACT
* * *
8163327 ATTAGTATTATTAATAGATAAAATAATATTATAATATATAA
1 ATTAGTATTATTAATACATAAAATAATAATATATTATATAA
8163368 TAATTATTAA
Statistics
Matches: 66, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
42 32 0.48
43 5 0.08
44 2 0.03
45 21 0.32
47 6 0.09
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.40
Consensus pattern (43 bp):
ATTAGTATTATTAATACATAAAATAATAATATATTATATAACT
Found at i:8163374 original size:37 final size:36
Alignment explanation
Indices: 8163307--8163412 Score: 90
Period size: 37 Copynumber: 2.8 Consensus size: 36
8163297 AACACATAAT
* * *
8163307 ATAATAAT-ATATTATAATGTATTAGT-ATTATTAATAG
1 ATAA-AATAATATTATAATATA-TAATAATTATTAA-AA
8163344 ATAAAATAATATTATAATATATAATAATTATTAAAA
1 ATAAAATAATATTATAATATATAATAATTATTAAAA
*
8163380 ATATTAATACATATATATAATTATTATAATAAT
1 ATA-AAATA-ATAT-TATAA-TA-TATAATAAT
8163413 ATAGATTAGA
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
36 10 0.17
37 28 0.48
38 4 0.07
39 5 0.09
40 2 0.03
41 9 0.16
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (36 bp):
ATAAAATAATATTATAATATATAATAATTATTAAAA
Found at i:8163428 original size:87 final size:87
Alignment explanation
Indices: 8163230--8163410 Score: 233
Period size: 87 Copynumber: 2.1 Consensus size: 87
8163220 TTTAAACCAA
* **
8163230 TATAATAAATTAGTATGTTATTAATACATAAAATAATAATATAATATATATAACTATTACTAATA
1 TATAATATATTAGTA--TTATTAATACATAAAATAATAATATAATATATATAACTATTAAAAATA
8163295 CTAACACATAATATAATAATATAT
64 CTAACACATAATATAATAATATAT
* * * * *
8163319 TATAATGTATTAGTATTATTAATAGATAAAATAATATTATAATATATAATAATTATTAAAAATAT
1 TATAATATATTAGTATTATTAATACATAAAATAATAATATAATATAT-ATAACTATTAAAAATAC
*
8163384 TAATACAT-ATAT-ATAAT-TAT
65 TAACACATAATATAATAATATAT
8163404 TATAATA
1 TATAATA
8163411 ATATAGATTA
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
85 9 0.11
86 5 0.06
87 34 0.42
88 20 0.25
89 13 0.16
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (87 bp):
TATAATATATTAGTATTATTAATACATAAAATAATAATATAATATATATAACTATTAAAAATACT
AACACATAATATAATAATATAT
Found at i:8163493 original size:16 final size:18
Alignment explanation
Indices: 8163464--8163496 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
8163454 TCACTTCTTA
8163464 TTTTTGTACTTCAATTTT
1 TTTTTGTACTTCAATTTT
8163482 TTTTTGT-C-TCAATTT
1 TTTTTGTACTTCAATTT
8163497 AGTGGCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.67
Consensus pattern (18 bp):
TTTTTGTACTTCAATTTT
Found at i:8163697 original size:22 final size:24
Alignment explanation
Indices: 8163672--8163718 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
8163662 TAAAAAATGT
8163672 AAAAA-TTAG-AAATAAATATATA
1 AAAAATTTAGAAAATAAATATATA
*
8163694 AAAAATTTAGAAAATATATATATA
1 AAAAATTTAGAAAATAAATATATA
8163718 A
1 A
8163719 TCTAGAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.23
23 4 0.18
24 13 0.59
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (24 bp):
AAAAATTTAGAAAATAAATATATA
Found at i:8163708 original size:20 final size:20
Alignment explanation
Indices: 8163685--8163736 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
8163675 AATTAGAAAT
*
8163685 AAATATATAAAAAATTTAGA
1 AAATATATAAAAAATCTAGA
* *
8163705 AAATATATATATAATCTAGA
1 AAATATATAAAAAATCTAGA
*
8163725 AAA-ACATAAAAA
1 AAATATATAAAAA
8163737 TTATAAAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (20 bp):
AAATATATAAAAAATCTAGA
Found at i:8163819 original size:9 final size:9
Alignment explanation
Indices: 8163805--8163839 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
8163795 ATAATATTAT
*
8163805 TAAAAAATG
1 TAAAAAATA
*
8163814 TAAAAATTA
1 TAAAAAATA
8163823 TAAAAAATA
1 TAAAAAATA
8163832 TAAAAAAT
1 TAAAAAAT
8163840 TGTAATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (9 bp):
TAAAAAATA
Found at i:8163840 original size:19 final size:19
Alignment explanation
Indices: 8163800--8163837 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
8163790 AACTGATAAT
*
8163800 ATTATTAAAAAATGTAAAA
1 ATTATTAAAAAATATAAAA
8163819 ATTA-TAAAAAATATAAAA
1 ATTATTAAAAAATATAAAA
8163837 A
1 A
8163838 ATTGTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (19 bp):
ATTATTAAAAAATATAAAA
Found at i:8167507 original size:123 final size:123
Alignment explanation
Indices: 8167319--8167683 Score: 315
Period size: 135 Copynumber: 2.9 Consensus size: 123
8167309 AAGTTAAGCG
* * * * * *
8167319 ACCTCAAGAACTACGAACTAAAGAGCTCGAACCACAGATGTCTTTTGCAGCAGAGCAGCATAAGA
1 ACCTCAAGAACTACGAACCAAAGAGCTCAAACCACAGACGTCTTTTGCAACAGACCAGCAAAAGA
* *
8167384 AATGTAAAA-TGGCAACAGAAAGTTCTCAAATGCCACAACTAACACAGAAGCAACCTCA
66 AAT-CAAAAGTGGAAACAGAAAGTTCTCAAATGCCACAACTAACACAGAAGCAACCTCA
* * *
8167442 ACCTCAAGAACTACGAACCAATGAGCTTAAACCGCAGACGTCTTTTGCAACAGAACCA-CAAAAG
1 ACCTCAAGAACTACGAACCAAAGAGCTCAAACCACAGACGTCTTTTGCAACAG-ACCAGCAAAAG
** ** **
8167506 AAATCAAAAGTGGAAATTGAAAGTTCTCAAATGCCACAACTAATGCAGAATGTCCACATTGAAGT
65 AAATCAAAAGTGGAAACAGAAAGTTCTCAAATGCCACAACTAACACAGAA-G----C----AACC
8167571 TAAGCA
121 T---CA
* * * * *
8167577 ACC-CGAAGATCTACGAACCAAAGAGCTCGAACCACAGATGTCTTTTGCAAAAGAACCA-CATAA
1 ACCTC-AAGAACTACGAACCAAAGAGCTCAAACCACAGACGTCTTTTGCAACAG-ACCAGCAAAA
* * * * *
8167640 GAAATCAAAAATGGCAACAGAAAGTTCTCATATGTCAGAACTAA
64 GAAATCAAAAGTGGAAACAGAAAGTTCTCAAATGCCACAACTAA
8167684 TGCCAATGGA
Statistics
Matches: 195, Mismatches: 32, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
122 4 0.02
123 90 0.46
124 4 0.02
128 1 0.01
132 3 0.02
134 1 0.01
135 92 0.47
ACGTcount: A:0.43, C:0.23, G:0.16, T:0.18
Consensus pattern (123 bp):
ACCTCAAGAACTACGAACCAAAGAGCTCAAACCACAGACGTCTTTTGCAACAGACCAGCAAAAGA
AATCAAAAGTGGAAACAGAAAGTTCTCAAATGCCACAACTAACACAGAAGCAACCTCA
Found at i:8179642 original size:22 final size:21
Alignment explanation
Indices: 8179582--8179644 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
8179572 TTTTTGGGTA
8179582 AAATTAAATTGTAATTTTTAAG
1 AAATTAAATTG-AATTTTTAAG
* * * *
8179604 ATAGTAAAAATGCATTTTTAAG
1 A-AATTAAATTGAATTTTTAAG
*
8179626 AAATTAAATTGAAATTTTA
1 AAATTAAATTGAATTTTTA
8179645 TCATTTTTAG
Statistics
Matches: 31, Mismatches: 9, Indels: 3
0.72 0.21 0.07
Matches are distributed among these distances:
21 13 0.42
22 11 0.35
23 7 0.23
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.41
Consensus pattern (21 bp):
AAATTAAATTGAATTTTTAAG
Found at i:8196139 original size:18 final size:18
Alignment explanation
Indices: 8196112--8196146 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8196102 AATCTAATAC
* *
8196112 TGTTCCTTGTAATTATTT
1 TGTTCATTGTAAATATTT
8196130 TGTTCATTGTAAATATT
1 TGTTCATTGTAAATATT
8196147 CGGTAATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.09, G:0.11, T:0.57
Consensus pattern (18 bp):
TGTTCATTGTAAATATTT
Found at i:8196670 original size:50 final size:51
Alignment explanation
Indices: 8196580--8196823 Score: 179
Period size: 50 Copynumber: 4.9 Consensus size: 51
8196570 CCATGAAGAC
* * * *
8196580 ATGAAGG-GAAAGATTTAAGCCGCAACGGCTAATCTAGTACCACGAAGATA
1 ATGAAGGAAAAAGATTTAAGCCGCAACGACGAACCTAGTACCACGAAGATA
* * * * *
8196630 ATGGAGGAAAAAG-TTTAAGTCGCAACGACGAACCTCGTACCTC-AGAGA-C
1 ATGAAGGAAAAAGATTTAAGCCGCAACGACGAACCTAGTACCACGA-AGATA
* * *
8196679 ATGAAGG-GAAAGATTTAAGCCGCAACGGCGAATCC-AGTACCACGAAGATG
1 ATGAAGGAAAAAGATTTAAGCCGCAACGACGAA-CCTAGTACCACGAAGATA
* ** * * * *
8196729 ATGAAGG-AAAAGGTTTAAATCGTAACGACGAACCTTA-TACCTCAAAGA-C
1 ATGAAGGAAAAAGATTTAAGCCGCAACGACGAACC-TAGTACCACGAAGATA
*
8196778 ATGAAAGG--AAAGATTTAAGCCGCAACGGCGAATCC-AGTACCACGAA
1 ATG-AAGGAAAAAGATTTAAGCCGCAACGACGAA-CCTAGTACCACGAA
8196824 TATACAAAAG
Statistics
Matches: 151, Mismatches: 32, Indels: 23
0.73 0.16 0.11
Matches are distributed among these distances:
48 5 0.03
49 64 0.42
50 77 0.51
51 5 0.03
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (51 bp):
ATGAAGGAAAAAGATTTAAGCCGCAACGACGAACCTAGTACCACGAAGATA
Found at i:8196756 original size:99 final size:97
Alignment explanation
Indices: 8196576--8197418 Score: 961
Period size: 99 Copynumber: 8.6 Consensus size: 97
8196566 ATTACCATGA
* * * **
8196576 AGACATGAAGGGAAAGATTTAAGCCGCAACGGCTAATCTAGTACCACGAAGATAATGGAGGAAAA
1 AGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATAA-AAAGG-AAA
* * **
8196641 AGTTTAAGTCGCAACGACGAACCTCGTACCTCAG
64 GGTTTAAGTCGCAACGGCGAACCTTATACCTCAG
* **
8196675 AGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGATGATGAAGGAAAA
1 AGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAAT-AAAAAGG-AAA
* * * *
8196740 GGTTTAAATCGTAACGACGAACCTTATACCTCAA
64 GGTTTAAGTCGCAACGGCGAACCTTATACCTCAG
* *
8196774 AGACATGAAAGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAATATACAAAAGGAAAG
1 AGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATA-AAAAGGAAAG
*
8196839 GTTTAAGTCGCAATGGCGAACCTTATACCTCAAG
65 GTTTAAGTCGCAACGGCGAACCTTATACCTC-AG
* ** *
8196873 GGACGCGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACAAAAATATAAAAGGAAAG
1 AGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATA-AAAAGGAAAG
*
8196938 GTTTAAGTCGCAATGGCGAACCTTATACCTCAGG
65 GTTTAAGTCGCAACGGCGAACCTTATACCTCA-G
* ** *
8196972 GGACGCGAAGGGAAAGATTTAAGCCGCAACGGTGAATCCAGTACCACGAAAATACAAAAGGAAAG
1 AGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATA-AAAAGGAAAG
*
8197037 GTTTAAGTCGCAATGGCGAACCTTATACCTCAAG
65 GTTTAAGTCGCAACGGCGAACCTTATACCTC-AG
* ** *
8197071 GGACGCGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACAAAAATACAAAAGGAAAG
1 AGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATA-AAAAGGAAAG
* *
8197136 GTTTAAGTTGCAATGGCGAACCTTATACCTCAAG
65 GTTTAAGTCGCAACGGCGAACCTTATACCTC-AG
* * * * * * * *
8197170 GGACACGAAGGGAAAGATTTAAGCCGCAATGACGAATCTAGTACAACAAAAATGCAAAAGGAAAG
1 AGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAAT-AAAAAGGAAAG
* * *
8197235 GTTTAAGCCGCAACGGCGAACCTTGTACCCCA-
65 GTTTAAGTCGCAACGGCGAACCTTATACCTCAG
* * * * ** * * * **
8197267 AAAAATAAAGGGAAAGATTTAAGCCACAATAGTGAATCTAGTACCACGAAGATGCAAAGTGAAAG
1 AGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATAAAAAG-GAAAG
*
8197332 GTTTAAGTCGCAACGGCGAACCTTGTACCTCA-
65 GTTTAAGTCGCAACGGCGAACCTTATACCTCAG
* * * * * *
8197364 AAAGCATAAAGGAAAAGATTTAAGCCGCAATGACGAATCTAGTACCACGAAAATA
1 AGA-CATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATA
8197419 TTGCAGCCGC
Statistics
Matches: 669, Mismatches: 67, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
96 4 0.01
97 79 0.12
98 77 0.12
99 507 0.76
100 2 0.00
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (97 bp):
AGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATAAAAAGGAAAGG
TTTAAGTCGCAACGGCGAACCTTATACCTCAG
Found at i:8196894 original size:50 final size:50
Alignment explanation
Indices: 8196757--8197205 Score: 298
Period size: 49 Copynumber: 9.1 Consensus size: 50
8196747 ATCGTAACGA
* * * *
8196757 CGAACCTTATACCTCAA-AGACATGAAAGGAAAGATTTAAGCCGCAACGG
1 CGAACCTTATACCTCAAGGGACACGAAGGGAAAGATTTAAGCCGCAATGG
* * * * * * *
8196806 CGAATCC--AGTACCACGAA--TATACAAAAGGAAAGGTTTAAGTCGCAATGG
1 CGAA-CCTTA-TACCTC-AAGGGACACGAAGGGAAAGATTTAAGCCGCAATGG
* *
8196855 CGAACCTTATACCTCAAGGGACGCGAAGGGAAAGATTTAAGCCGCAACGG
1 CGAACCTTATACCTCAAGGGACACGAAGGGAAAGATTTAAGCCGCAATGG
* ** * ** * * *
8196905 CGAATCC--AGTACCACAA-AAATATAAAAGGAAAGGTTTAAGTCGCAATGG
1 CGAA-CCTTA-TACCTCAAGGGACACGAAGGGAAAGATTTAAGCCGCAATGG
* * *
8196954 CGAACCTTATACCTCAGGGGACGCGAAGGGAAAGATTTAAGCCGCAACGG
1 CGAACCTTATACCTCAAGGGACACGAAGGGAAAGATTTAAGCCGCAATGG
* * * * * * * *
8197004 TGAATCC--AGTACCACGAA--AATACAAAAGGAAAGGTTTAAGTCGCAATGG
1 CGAA-CCTTA-TACCTC-AAGGGACACGAAGGGAAAGATTTAAGCCGCAATGG
* *
8197053 CGAACCTTATACCTCAAGGGACGCGAAGGGAAAGATTTAAGCCGCAACGG
1 CGAACCTTATACCTCAAGGGACACGAAGGGAAAGATTTAAGCCGCAATGG
* ** * * * * **
8197103 CGAATCC--AGTACCACAA-AAATACAAAAGGAAAGGTTTAAGTTGCAATGG
1 CGAA-CCTTA-TACCTCAAGGGACACGAAGGGAAAGATTTAAGCCGCAATGG
*
8197152 CGAACCTTATACCTCAAGGGACACGAAGGGAAAGATTTAAGCCGCAATGA
1 CGAACCTTATACCTCAAGGGACACGAAGGGAAAGATTTAAGCCGCAATGG
8197202 CGAA
1 CGAA
8197206 TCTAGTACAA
Statistics
Matches: 294, Mismatches: 82, Indels: 47
0.70 0.19 0.11
Matches are distributed among these distances:
48 13 0.04
49 141 0.48
50 133 0.45
51 7 0.02
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.16
Consensus pattern (50 bp):
CGAACCTTATACCTCAAGGGACACGAAGGGAAAGATTTAAGCCGCAATGG
Found at i:8197116 original size:297 final size:293
Alignment explanation
Indices: 8196577--8197418 Score: 1112
Period size: 297 Copynumber: 2.8 Consensus size: 293
8196567 TTACCATGAA
* * * * ** *
8196577 GACATGAAGGGAAAGATTTAAGCCGCAACGGCTAATCTAGTACCACGAAGATAATGGAGGAAAAA
1 GACACGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACAAAAATAA-AAAGG-AAAG
* *
8196642 GTTTAAGTCGCAACGACGAACCTCGTACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGG
64 GTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGG
* ** * * *
8196707 CGAATCCAGTACCACGAAGATGATGAAGGAAAAGGTTTAAATCGTAACGACGAACCTTATACCTC
129 TGAATCCAGTACCACGAAGAT-ACAAAGG-AAAGGTTTAAGTCGCAACGGCGAACCTTATACCTC
* *
8196772 AAAGACATGAAAGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAATATACAAAAGGAA
192 AAAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATACAAAAGGAA
8196837 AGGTTTAAGTCGCAATGGCGAACCTTATACCTCAAGG
257 AGGTTTAAGTCGCAATGGCGAACCTTATACCTCAAGG
* *
8196874 GACGCGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACAAAAATATAAAAGGAAAGG
1 GACACGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACAAAAATA-AAAAGGAAAGG
* * * **
8196939 TTTAAGTCGCAATGGCGAACCTTATACCTCAGGGGACGCGAAGGGAAAGATTTAAGCCGCAACGG
65 TTTAAGTCGCAACGGCGAACCTTGTACCTCA-GAGACATGAAGGGAAAGATTTAAGCCGCAACGG
* *
8197004 TGAATCCAGTACCACGAAAATACAAAAGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCA
129 TGAATCCAGTACCACGAAGATAC-AAAGGAAAGGTTTAAGTCGCAACGGCGAACCTTATACCTCA
* ** *
8197069 AGGGACGCGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACAAAAATACAAAAGGAA
193 A-AGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATACAAAAGGAA
*
8197134 AGGTTTAAGTTGCAATGGCGAACCTTATACCTCAAGG
257 AGGTTTAAGTCGCAATGGCGAACCTTATACCTCAAGG
* * * *
8197171 GACACGAAGGGAAAGATTTAAGCCGCAATGACGAATCTAGTACAACAAAAATGCAAAAGGAAAGG
1 GACACGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACAAAAAT-AAAAAGGAAAGG
* * * * * * **
8197236 TTTAAGCCGCAACGGCGAACCTTGTACCCCA-AAAAATAAAGGGAAAGATTTAAGCCACAATAGT
65 TTTAAGTCGCAACGGCGAACCTTGTACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGT
* * *
8197300 GAATCTAGTACCACGAAGATGCAAAGTGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAA
130 GAATCCAGTACCACGAAGATACAAAG-GAAAGGTTTAAGTCGCAACGGCGAACCTTATACCTCAA
* * * * *
8197365 A-AGCATAAAGGAAAAGATTTAAGCCGCAATGACGAATCTAGTACCACGAAAATA
194 AGA-CATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATA
8197419 TTGCAGCCGC
Statistics
Matches: 474, Mismatches: 64, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
293 1 0.00
294 47 0.10
295 79 0.17
296 65 0.14
297 281 0.59
298 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (293 bp):
GACACGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACAAAAATAAAAAGGAAAGGT
TTAAGTCGCAACGGCGAACCTTGTACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGTG
AATCCAGTACCACGAAGATACAAAGGAAAGGTTTAAGTCGCAACGGCGAACCTTATACCTCAAAG
ACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAATACAAAAGGAAAGGT
TTAAGTCGCAATGGCGAACCTTATACCTCAAGG
Found at i:8197311 original size:48 final size:47
Alignment explanation
Indices: 8196583--8197417 Score: 288
Period size: 49 Copynumber: 17.0 Consensus size: 47
8196573 TGAAGACATG
* * * *
8196583 AAGGGAAAGATTTAAGCCGCAACGGCTAATCTAGTACCACGAAGAT-A
1 AAGGGAAAGATTTAAGCCGCAA-TGCGAATCTAGTACCACAAAAATCA
* * * * * * * * *
8196630 ATGGAGGAAAAAGTTTAAGTCGCAACGACGAACCTCGTACCTCAGAGACAT-G
1 A-AG-GGAAAGA-TTTAAGCCGCAATG-CGAATCTAGTACCACA-A-AAATCA
* * * * *
8196682 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGATGA
1 AAGGGAAAGATTTAAGCCGCAA-TGCGAATCTAGTACCACAAAAATCA
* * ** * * * * *
8196730 TGAAGGAAAAGGTTTAAATCGTAACGACGAACCTTA-TACCTCAAAGACATGA
1 --AAGGGAAAGATTTAAGCCGCAATG-CGAATC-TAGTACCACAAA-A-ATCA
* * * *
8196782 AA-GGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAATATACA
1 AAGGGAAAGATTTAAGCCGCAA-TGCGAATCTAGTACCACAAAAAT-CA
* * * * * * ** *
8196830 AAAGGAAAGGTTTAAGTCGCAATGGCGAACCTTA-TACCTCAAGGGACGCG
1 AAGGGAAAGATTTAAGCCGCAAT-GCGAATC-TAGTACCACAA--AAATCA
* * *
8196880 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACAAAAATATA
1 AAGGGAAAGATTTAAGCCGCAA-TGCGAATCTAGTACCACAAAAAT-CA
* * * * * ** ** *
8196929 AAAGGAAAGGTTTAAGTCGCAATGGCGAACCTTA-TACCTCAGGGGACGCG
1 AAGGGAAAGATTTAAGCCGCAAT-GCGAATC-TAGTACCACA--AAAATCA
* * * *
8196979 AAGGGAAAGATTTAAGCCGCAACGGTGAATCCAGTACCACGAAAATACA
1 AAGGGAAAGATTTAAGCCGCAA-TGCGAATCTAGTACCACAAAAAT-CA
* * * * * * ** *
8197028 AAAGGAAAGGTTTAAGTCGCAATGGCGAACCTTA-TACCTCAAGGGACGCG
1 AAGGGAAAGATTTAAGCCGCAAT-GCGAATC-TAGTACCACAA--AAATCA
* *
8197078 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACAAAAATACA
1 AAGGGAAAGATTTAAGCCGCAA-TGCGAATCTAGTACCACAAAAAT-CA
* * ** * * * *
8197127 AAAGGAAAGGTTTAAGTTGCAATGGCGAACCTTA-TACCTCAAGGGACA-CG
1 AAGGGAAAGATTTAAGCCGCAAT-GCGAATC-TAGTACCACAA---AAATCA
*
8197177 AAGGGAAAGATTTAAGCCGCAATGACGAATCTAGTACAACAAAAATGCA
1 AAGGGAAAGATTTAAGCCGCAATG-CGAATCTAGTACCACAAAAAT-CA
* * * * * *
8197226 AAAGGAAAGGTTTAAGCCGCAACGGCGAACCTTGTACCCCAAAAAAT-A
1 AAGGGAAAGATTTAAGCCGCAA-TGCGAATCTAGTACCAC-AAAAATCA
* * * *
8197274 AAGGGAAAGATTTAAGCCACAATAGTGAATCTAGTACCACGAAGATGCA
1 AAGGGAAAGATTTAAGCCGCAAT-GCGAATCTAGTACCACAAAAAT-CA
* * * * * * *
8197323 AAGTGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAAAAGCAT-A
1 AAGGGAAAGATTTAAGCCGCAA-TGCGAATCTAGTACCACAAAA--ATCA
* *
8197372 AAGGAAAAGATTTAAGCCGCAATGACGAATCTAGTACCACGAAAAT
1 AAGGGAAAGATTTAAGCCGCAATG-CGAATCTAGTACCACAAAAAT
8197418 ATTGCAGCCG
Statistics
Matches: 555, Mismatches: 176, Indels: 114
0.66 0.21 0.13
Matches are distributed among these distances:
47 14 0.03
48 42 0.08
49 284 0.51
50 198 0.36
51 7 0.01
52 10 0.02
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (47 bp):
AAGGGAAAGATTTAAGCCGCAATGCGAATCTAGTACCACAAAAATCA
Found at i:8201587 original size:19 final size:18
Alignment explanation
Indices: 8201563--8201626 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 18
8201553 TTATATTTTA
8201563 AAAAAATTATACAAAATTT
1 AAAAAATTATA-AAAATTT
8201582 AAAAAA-TATAAAAAATTCT
1 AAAAAATTAT-AAAAATT-T
*
8201601 AAAAAATATATGAAAATTTT
1 AAAAAAT-TAT-AAAAATTT
8201621 AAAAAA
1 AAAAAA
8201627 ATCTAAAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
18 9 0.23
19 14 0.36
20 7 0.18
21 9 0.23
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (18 bp):
AAAAAATTATAAAAATTT
Found at i:8201626 original size:10 final size:10
Alignment explanation
Indices: 8201527--8201626 Score: 53
Period size: 10 Copynumber: 9.6 Consensus size: 10
8201517 TTCAAAAATA
8201527 AAAAAATTTAT
1 AAAAAATTT-T
*
8201538 AAAAAATTCT
1 AAAAAATTTT
8201548 AAAATTTATATTTT
1 AAAA---A-ATTTT
*
8201562 AAAAAAATTAT
1 -AAAAAATTTT
*
8201573 ACAAAA-TTT
1 AAAAAATTTT
*
8201582 AAAAAA-TAT
1 AAAAAATTTT
*
8201591 AAAAAATTCT
1 AAAAAATTTT
*
8201601 AAAAAA-TAT
1 AAAAAATTTT
*
8201610 ATGAAAATTTT
1 A-AAAAATTTT
8201621 AAAAAA
1 AAAAAA
8201627 ATCTAAAATA
Statistics
Matches: 69, Mismatches: 12, Indels: 17
0.70 0.12 0.17
Matches are distributed among these distances:
9 18 0.26
10 26 0.38
11 15 0.22
12 1 0.01
13 1 0.01
14 4 0.06
15 4 0.06
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:8201852 original size:21 final size:21
Alignment explanation
Indices: 8201828--8201872 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8201818 GAACAATTTC
8201828 ATTTGATTCAACTCGACTCGA
1 ATTTGATTCAACTCGACTCGA
* ** *
8201849 ATTTTATTTTACTCGACTTGA
1 ATTTGATTCAACTCGACTCGA
8201870 ATT
1 ATT
8201873 AGAAAAAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.18, G:0.11, T:0.44
Consensus pattern (21 bp):
ATTTGATTCAACTCGACTCGA
Found at i:8203600 original size:18 final size:19
Alignment explanation
Indices: 8203556--8203639 Score: 62
Period size: 20 Copynumber: 4.2 Consensus size: 19
8203546 TTTTATAATT
*
8203556 TTTTAAAATATAAGTTTTGAA
1 TTTTAAAA-ATTA-TTTTGAA
* *
8203577 TTTTTTATAAA-TATTTTTAA
1 --TTTTAAAAATTATTTTGAA
8203597 TTTTAAAAATTATTTTGAA
1 TTTTAAAAATTATTTTGAA
** *
8203616 TTTTTGGAAATTATTTTAAA
1 -TTTTAAAAATTATTTTGAA
8203636 TTTT
1 TTTT
8203640 TTTGTAAGTT
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
18 8 0.16
19 12 0.24
20 22 0.43
21 1 0.02
22 1 0.02
23 7 0.14
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:8203626 original size:20 final size:20
Alignment explanation
Indices: 8203603--8203640 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8203593 TTAATTTTAA
*
8203603 AAATTATTTTGAATTTTTGG
1 AAATTATTTTAAATTTTTGG
8203623 AAATTATTTTAAATTTTT
1 AAATTATTTTAAATTTTT
8203641 TTGTAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
AAATTATTTTAAATTTTTGG
Found at i:8203631 original size:39 final size:41
Alignment explanation
Indices: 8203556--8203639 Score: 102
Period size: 39 Copynumber: 2.1 Consensus size: 41
8203546 TTTTATAATT
* *
8203556 TTTTAAAATATAAGTTTTGAATTTTTTATAAATATTTTTAA
1 TTTTAAAATATAAGTTTTGAATTTTTGATAAATATTTTAAA
* *
8203597 TTTTAAAA-ATTA-TTTTGAATTTTTGGA-AATTATTTTAAA
1 TTTTAAAATATAAGTTTTGAATTTTT-GATAAATATTTTAAA
8203636 TTTT
1 TTTT
8203640 TTTGTAAGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
39 26 0.68
40 4 0.11
41 8 0.21
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (41 bp):
TTTTAAAATATAAGTTTTGAATTTTTGATAAATATTTTAAA
Found at i:8211654 original size:16 final size:16
Alignment explanation
Indices: 8211635--8211686 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
8211625 TGGACCCAAT
8211635 TTTAAATTTTAAATTA
1 TTTAAATTTTAAATTA
* * *
8211651 TTTAAGTTTGAATTTA
1 TTTAAATTTTAAATTA
8211667 CTTTAAA-TTTAAACTTA
1 -TTTAAATTTTAAA-TTA
8211684 TTT
1 TTT
8211687 TGAGTTTGGA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
16 20 0.71
17 8 0.29
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (16 bp):
TTTAAATTTTAAATTA
Found at i:8211700 original size:34 final size:32
Alignment explanation
Indices: 8211635--8211723 Score: 108
Period size: 34 Copynumber: 2.7 Consensus size: 32
8211625 TGGACCCAAT
8211635 TTTAAATTTTAAATTA-TTTAAGTTTGAATTTA
1 TTTAAA-TTTAAATTATTTTAAGTTTGAATTTA
* *
8211667 CTTTAAATTTAAACTTATTTTGAGTTTGGATTTA
1 -TTTAAATTTAAA-TTATTTTAAGTTTGAATTTA
8211701 TTTCAAATTTAAATTTATTTTAA
1 TTT-AAATTTAAA-TTATTTTAA
8211724 ATTAAATTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
32 6 0.12
33 12 0.24
34 31 0.63
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (32 bp):
TTTAAATTTAAATTATTTTAAGTTTGAATTTA
Found at i:8211730 original size:16 final size:17
Alignment explanation
Indices: 8211642--8211733 Score: 66
Period size: 17 Copynumber: 5.6 Consensus size: 17
8211632 AATTTTAAAT
*
8211642 TTTAAA-TTATTT-AAG
1 TTTAAATTTATTTCAAA
*
8211657 TTTGAATTTACTTT-AAA
1 TTTAAATTTA-TTTCAAA
* ** *
8211674 TTTAAACTTATTTTGAG
1 TTTAAATTTATTTCAAA
**
8211691 TTTGGATTTATTTCAAA
1 TTTAAATTTATTTCAAA
*
8211708 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTCAAA
8211725 -TTAAATTTA
1 TTTAAATTTA
8211734 AACTTTAAAA
Statistics
Matches: 59, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
15 5 0.08
16 15 0.25
17 39 0.66
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTTCAAA
Found at i:8213333 original size:30 final size:30
Alignment explanation
Indices: 8213252--8213814 Score: 352
Period size: 30 Copynumber: 18.9 Consensus size: 30
8213242 AAGGTCCTTG
* *
8213252 AACTATCT-AAAAATCACATTTTGACCCC-C
1 AACT-TCTCAAAAATTACATTTTGACCCCTA
* *
8213281 AACTT-TCCAATAATTACATTTTAACCCCTA
1 AACTTCT-CAAAAATTACATTTTGACCCCTA
* * * *
8213311 AACTTCTTAAAAATAACTTTTTAACCCCTA
1 AACTTCTCAAAAATTACATTTTGACCCCTA
* * *
8213341 AAATTCTAAAAAAAAATACATTTTGACCCCTCA
1 AACTTCT--CAAAAATTACATTTTGACCCCT-A
*
8213374 AACTT-TCTAAAAATTACATTTTGACCCCCA
1 AACTTCTC-AAAAATTACATTTTGACCCCTA
* * * * *
8213404 AACTTCCCAAAACTCATATTTTCACCCCTA
1 AACTTCTCAAAAATTACATTTTGACCCCTA
* *
8213434 AACTTCTTAAAAATTACATTTTGATCCCTA
1 AACTTCTCAAAAATTACATTTTGACCCCTA
* * *
8213464 AACATTC-CATAAATTACATTTTGACCCTTG
1 AAC-TTCTCAAAAATTACATTTTGACCCCTA
* *
8213494 AACTTC-C-AAAATTACCTTTTAACCCCTA
1 AACTTCTCAAAAATTACATTTTGACCCCTA
*
8213522 AACTT-TCCAAAAATTA-ATTTTTTTACCCCTA
1 AACTTCT-CAAAAATTACA--TTTTGACCCCTA
* * *
8213553 AATTTCCCAAAAATTACATTTTGACTCCTA
1 AACTTCTCAAAAATTACATTTTGACCCCTA
* *
8213583 AACTT-TCTAAAAATTACATTTTAACCTC-A
1 AACTTCTC-AAAAATTACATTTTGACCCCTA
* * * **
8213612 AACTTCTCGAAAATCATATTTTTG-CCCCCG
1 AACTTCTCAAAAATTACA-TTTTGACCCCTA
*
8213642 AACTTC-CAAAATTTACCATTTT-A-CCCTCA
1 AACTTCTCAAAAATTA-CATTTTGACCCCT-A
* * * *
8213671 GACGTC-CAAAAATTACATTTTTTA-CCCAA
1 AACTTCTCAAAAATTACA-TTTTGACCCCTA
*
8213700 AACTTTTCAAAAATTACCATTTT-A-CCCTCA
1 AACTTCTCAAAAATTA-CATTTTGACCCCT-A
*
8213730 AA-TATC-CAAAAATTACATTTTTTACCCC-A
1 AACT-TCTCAAAAATTACA-TTTTGACCCCTA
8213759 AACTT-TCCAAAAATTACCA-TTT-ACCCCTA
1 AACTTCT-CAAAAATTA-CATTTTGACCCCTA
*
8213788 AACATC-CAAAAATTATCATTTT-ACCCC
1 AACTTCTCAAAAATTA-CATTTTGACCCC
8213815 CGAGTGTCCC
Statistics
Matches: 419, Mismatches: 75, Indels: 80
0.73 0.13 0.14
Matches are distributed among these distances:
27 1 0.00
28 45 0.11
29 111 0.26
30 183 0.44
31 55 0.13
32 19 0.05
33 5 0.01
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.34
Consensus pattern (30 bp):
AACTTCTCAAAAATTACATTTTGACCCCTA
Found at i:8213431 original size:93 final size:91
Alignment explanation
Indices: 8213260--8213789 Score: 298
Period size: 89 Copynumber: 5.9 Consensus size: 91
8213250 TGAACTATCT
* * * **
8213260 AAAAATCACATTTTGACCCC-C-AACTTTCCAATAATTACATTTTAACCCCTAAACTTCTTAAAA
1 AAAAAT-ACATTTTGACCCCTCAAACTTTCCAAAAATTACATTTTGACCCCCAAACTTCCCAAAA
8213323 ATAACTTTTTAACCCCTAAAATTCTAAAA
65 ATAACTTTTTAACCCCTAAAATTCT--AA
* *
8213352 AAAAATACATTTTGACCCCTCAAACTTTCTAAAAATTACATTTTGACCCCCAAACTTCCCAAAAC
1 AAAAATACATTTTGACCCCTCAAACTTTCCAAAAATTACATTTTGACCCCCAAACTTCCCAAAAA
* * * *
8213417 TCA-TATTTTCACCCCTAAACTTCTTA
66 TAACT-TTTTAACCCCTAAAATTCTAA
* * * * ***
8213443 AAAATTACATTTTGATCCCT-AAACATTCCATAAATTACATTTTGACCCTTGAACTT-CC-AAAA
1 AAAAATACATTTTGACCCCTCAAACTTTCCAAAAATTACATTTTGACCCCCAAACTTCCCAAAAA
* * * *
8213505 TTACCTTTTAACCCCTAAACTTTCCAA
66 TAACTTTTTAACCCCTAAA-ATTCTAA
* * * * * *
8213532 AAATTAAT--TTTTTTACCCCT-AAA-TTTCCCAAAAATTACATTTTGACTCCTAAACTTTCTAA
1 AAA--AATACATTTTGACCCCTCAAACTTT-CCAAAAATTACATTTTGACCCCCAAACTTCCCAA
* * * *
8213593 AAATTACATTTTAACCTC-AAACTTCTCGAA
63 AAATAACTTTTTAACCCCTAAAATTCT--AA
** * * * * * *
8213623 AATCATA-TTTTTG-CCCC-CGAAC-TTCCAAAATTTACCATTTT-ACCCTCAGACGT-CCAAAA
1 AAAAATACATTTTGACCCCTCAAACTTTCCAAAAATTA-CATTTTGACCCCCAAACTTCCCAAAA
* * * *
8213682 ATTACATTTTTTA-CCC-AAAACTTTTCA
65 ATAAC-TTTTTAACCCCTAAAA-TTCTAA
* * * *
8213709 AAAATTACCATTTT-A-CCCTCAAA-TATCCAAAAATTACATTTTTTA-CCCCAAACTTTCCAAA
1 AAAAATA-CATTTTGACCCCTCAAACTTTCCAAAAATTACA-TTTTGACCCCCAAACTTCCCAAA
* **
8213770 AATTACCATTT-ACCCCTAAA
64 AATAACTTTTTAACCCCTAAA
8213790 CATCCAAAAA
Statistics
Matches: 341, Mismatches: 69, Indels: 59
0.73 0.15 0.13
Matches are distributed among these distances:
86 5 0.01
87 21 0.06
88 78 0.23
89 80 0.23
90 39 0.11
91 55 0.16
92 8 0.02
93 55 0.16
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.34
Consensus pattern (91 bp):
AAAAATACATTTTGACCCCTCAAACTTTCCAAAAATTACATTTTGACCCCCAAACTTCCCAAAAA
TAACTTTTTAACCCCTAAAATTCTAA
Found at i:8213576 original size:119 final size:118
Alignment explanation
Indices: 8213247--8213809 Score: 319
Period size: 119 Copynumber: 4.7 Consensus size: 118
8213237 CCCAAAAGGT
* * * * * * *
8213247 CCTTGAACTATCTAAAAATCACATTTTGACCCCC-AACTTTCCAATAA-TTACATTTTAACCCCT
1 CCTTGAACT-TC-CAAAATTACATTTTAACCCCCAAAC-TTCCAAAAACTAATATTTTCACCCCT
** * * * * * *
8213310 AAACTTCTTAAAAATAACTTTTTAACCCCTAAA-ATTCTAAAAAAAAATACATTTTGACC
63 AAACTTCCCAAAAATTACATTTTGACTCCTAAACATTC---CAAAAATTACATTTTGA-C
** * * * *
8213369 CCTCAAACTTTCTAAAAATTACATTTTGACCCCCAAACTTCCCAAAACTCATATTTTCACCCCTA
1 CCTTGAAC-TTC-CAAAATTACATTTTAACCCCCAAACTTCCAAAAACTAATATTTTCACCCCTA
** *
8213434 AACTTCTTAAAAATTACATTTTGA-TCCCTAAACATTCCATAAATTACATTTTGAC
64 AACTTCCCAAAAATTACATTTTGACT-CCTAAACATTCCAAAAATTACATTTTGAC
* * * * *
8213489 CCTTGAACTTCCAAAATTACCTTTTAACCCCTAAACTTTCCAAAAATTAATTTTTTTACCCCTAA
1 CCTTGAACTTCCAAAATTACATTTTAACCCCCAAAC-TTCCAAAAACTAATATTTTCACCCCTAA
* * * *
8213554 ATTTCCCAAAAATTACATTTTGACTCCTAAACTTTCTAAAAATTACATTTT-AA
65 ACTTCCCAAAAATTACATTTTGACTCCTAAACATTCCAAAAATTACATTTTGAC
** * * ** * ** **
8213607 CCTCAAACTTCTCGAAAATCATATTTTTGCCCCCGAACTTCCAAAATTTACCATTTT-A-CCCTC
1 CCTTGAACTTC-C-AAAATTACATTTTAACCCCCAAACTTCCAAAAACTAATATTTTCACCCCT-
* * * * * *
8213670 AGACGT-CCAAAAATTACATTTTTTAC-CCAAAACTTTTCAAAAATTACCATTTT-AC
63 AAACTTCCCAAAAATTACA-TTTTGACTCCTAAACATTCCAAAAATTA-CATTTTGAC
* * * * **
8213725 CC-TCAAATATCCAAAAATTACATTTTTTA-CCCCAAACTTTCCAAAAATTACCA-TTT-ACCCC
1 CCTTGAACT-TCC-AAAATTACA-TTTTAACCCCCAAAC-TTCCAAAAACTAATATTTTCACCCC
*
8213786 TAAACAT-CCAAAAATTATCATTTT
62 TAAACTTCCCAAAAATTA-CATTTT
8213810 ACCCCCGAGT
Statistics
Matches: 359, Mismatches: 65, Indels: 39
0.78 0.14 0.08
Matches are distributed among these distances:
117 73 0.20
118 77 0.21
119 85 0.24
120 25 0.07
121 14 0.04
122 36 0.10
123 45 0.13
124 4 0.01
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.34
Consensus pattern (118 bp):
CCTTGAACTTCCAAAATTACATTTTAACCCCCAAACTTCCAAAAACTAATATTTTCACCCCTAAA
CTTCCCAAAAATTACATTTTGACTCCTAAACATTCCAAAAATTACATTTTGAC
Found at i:8213646 original size:59 final size:59
Alignment explanation
Indices: 8213260--8213809 Score: 337
Period size: 59 Copynumber: 9.2 Consensus size: 59
8213250 TGAACTATCT
* * * * *
8213260 AAAAATCACA-TTTTGACCCCCAACTTTCCAATAATTA-CATTTTAACCC-CTAAACTTCTT
1 AAAAATTACATTTTTTACCCCAAACTTTCCAAAAATTACCATTTT-ACCCTC-AAACTTC-C
* * * ** * *
8213319 AAAAATAAC-TTTTTAACCCCTAAAATTCTAAAAAAAAATA-CATTTTGACCCCTCAAACTTTCT
1 AAAAATTACATTTTTTACCCC-AAACTT-T-CCAAAAATTACCATTTT-A-CCCTCAAAC-TTCC
* * * * * *
8213382 AAAAATTACA-TTTTGACCCCCAAACTTCCCAAAACTCA-TATTTTCACCC-CTAAACTTCTT
1 AAAAATTACATTTTTTA-CCCCAAACTTTCCAAAAATTACCATTTT-ACCCTC-AAACTTC-C
* * * * **
8213442 AAAAATTACA-TTTTGATCCCTAAACATTCCATAAATTA-CATTTTGACCCTTGAACTTCC
1 AAAAATTACATTTTTTA-CCCCAAACTTTCCAAAAATTACCATTTT-ACCCTCAAACTTCC
* * *** *
8213501 -AAAATTAC-CTTTTAACCCCTAAACTTTCCAAAAATTAATTTTTTTACCC-CTAAATTTCCC
1 AAAAATTACATTTTTTACCCC-AAACTTTCCAAAAATT-ACCATTTTACCCTC-AAACTT-CC
* * * *
8213561 AAAAATTACA-TTTTGACTCCTAAACTTTCTAAAAATTA-CATTTTAACCTCAAACTTCTC
1 AAAAATTACATTTTTTAC-CCCAAACTTTCCAAAAATTACCATTTTACCCTCAAACTTC-C
* * * ** * * * *
8213620 GAAAATCATATTTTTGCCCCCGAAC-TTCCAAAATTTACCATTTTACCCTCAGACGTCC
1 AAAAATTACATTTTTTACCCCAAACTTTCCAAAAATTACCATTTTACCCTCAAACTTCC
* *
8213678 AAAAATTACATTTTTTACCCAAAACTTTTCAAAAATTACCATTTTACCCTCAAA-TATCC
1 AAAAATTACATTTTTTACCCCAAACTTTCCAAAAATTACCATTTTACCCTCAAACT-TCC
*
8213737 AAAAATTACATTTTTTACCCCAAACTTTCCAAAAATTACCA-TTTACCC-CTAAACATCC
1 AAAAATTACATTTTTTACCCCAAACTTTCCAAAAATTACCATTTTACCCTC-AAACTTCC
8213795 AAAAATTATCATTTT
1 AAAAATTA-CATTTT
8213810 ACCCCCGAGT
Statistics
Matches: 388, Mismatches: 73, Indels: 60
0.74 0.14 0.12
Matches are distributed among these distances:
57 4 0.01
58 78 0.20
59 144 0.37
60 72 0.19
61 41 0.11
62 15 0.04
63 26 0.07
64 8 0.02
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.34
Consensus pattern (59 bp):
AAAAATTACATTTTTTACCCCAAACTTTCCAAAAATTACCATTTTACCCTCAAACTTCC
Found at i:8218992 original size:18 final size:18
Alignment explanation
Indices: 8218969--8219023 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
8218959 GGATTCAATG
8218969 AAGAAAAAATAAAAAAGA
1 AAGAAAAAATAAAAAAGA
8218987 AAG-AAAAATGAAAAAA-A
1 AAGAAAAAAT-AAAAAAGA
* *
8219004 ATGAAAAAATGAAAAAGA
1 AAGAAAAAATAAAAAAGA
8219022 AA
1 AA
8219024 ATAGAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 14 0.45
18 17 0.55
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (18 bp):
AAGAAAAAATAAAAAAGA
Found at i:8219003 original size:10 final size:10
Alignment explanation
Indices: 8218979--8219033 Score: 53
Period size: 10 Copynumber: 5.4 Consensus size: 10
8218969 AAGAAAAAAT
8218979 AAAAAA-GAA
1 AAAAAATGAA
8218988 AGAAAAATGAA
1 A-AAAAATGAA
8218999 AAAAAATG--
1 AAAAAATGAA
8219007 AAAAAATGAAA
1 AAAAAATG-AA
8219018 AAGAAAATAGAA
1 AA-AAAAT-GAA
8219030 AAAA
1 AAAA
8219034 TGGGAAAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
8 8 0.21
9 1 0.03
10 12 0.31
11 8 0.21
12 9 0.23
13 1 0.03
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (10 bp):
AAAAAATGAA
Found at i:8219034 original size:29 final size:29
Alignment explanation
Indices: 8218965--8219050 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
8218955 ACTTGGATTC
*
8218965 AATGAAGAAAAAAT-AAAAAAGAAAGA-AA
1 AATG-AGAAAAAATGAAAAAAGAAAAAGAA
*
8218993 AATGAAAAAAAATGAAAAAATGAAAAAGAA
1 AATGAGAAAAAATGAAAAAA-GAAAAAGAA
*
8219023 AAT-AGAAAAAATGGGAAAAAGAAAAAGA
1 AATGAGAAAAAAT-GAAAAAAGAAAAAGA
8219051 GAGGTCGAGG
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
27 8 0.16
28 10 0.20
29 21 0.42
30 11 0.22
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (29 bp):
AATGAGAAAAAATGAAAAAAGAAAAAGAA
Found at i:8220074 original size:49 final size:49
Alignment explanation
Indices: 8219983--8220130 Score: 199
Period size: 49 Copynumber: 3.0 Consensus size: 49
8219973 CTGAGAAAAA
* * *
8219983 CATAAAGATGTGATGGGAAAGGTTGAGGCCACAACGGCAAACCCAGTAC
1 CATAAAGATTTGAAGGGAAAGGTTGAGGTCACAACGGCAAACCCAGTAC
* *
8220032 CATGAAA-ATTTGAAGGGAAAGGTTGAGGTCACAACGGTAAACCCGGTAC
1 CAT-AAAGATTTGAAGGGAAAGGTTGAGGTCACAACGGCAAACCCAGTAC
* * * *
8220081 CATAAAGATTTGAAGGGAAAAGTTGATGTCACAACGGCGAACCCGGTAC
1 CATAAAGATTTGAAGGGAAAGGTTGAGGTCACAACGGCAAACCCAGTAC
8220130 C
1 C
8220131 TCAGAAGATG
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
48 3 0.03
49 82 0.93
50 3 0.03
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.17
Consensus pattern (49 bp):
CATAAAGATTTGAAGGGAAAGGTTGAGGTCACAACGGCAAACCCAGTAC
Found at i:8220319 original size:139 final size:139
Alignment explanation
Indices: 8220071--8220446 Score: 542
Period size: 139 Copynumber: 2.7 Consensus size: 139
8220061 CACAACGGTA
* * * * * * * * *
8220071 AACCCGGTACCATAAAGATTTGAAGGGAAAA-GTTGATGTCACAACGGCGAACCCGGTACCTCAG
1 AACCCGATGCCATGAAGATTTTAAGGGAAAAGGTTGATGCCACAATGGCAAACCTGGTACCTAAG
* * *
8220135 -AAGATGTGATA-GGAAAGATTGAGGCTGCAACGGCGAATTCGGTACCATTAAATGTGATGGGAA
66 AAAAATATGA-AGGGAAAGATTGAGGCTGCAACGGCGAATCCGGTACCATTAAATGTGATGGGAA
8220198 AAGTTGAGGG
130 AAGTTGAGGG
*
8220208 AACCCGATGCCATGAAGATTTTAAGGGAAAAGGTTGATGCCACAATGACAAACCTGGTACCTAAG
1 AACCCGATGCCATGAAGATTTTAAGGGAAAAGGTTGATGCCACAATGGCAAACCTGGTACCTAAG
*
8220273 AAAAATATGAAGGGAAAGATTGAGGCTGCAACGGTGAATCCGGTACCATTAAATGTGATGGGAAA
66 AAAAATATGAAGGGAAAGATTGAGGCTGCAACGGCGAATCCGGTACCATTAAATGTGATGGGAAA
8220338 AGTTGAGGG
131 AGTTGAGGG
* * * * *
8220347 AACCCGATGCTATGAAGATTTTAAAGGAAGAGGTTGAGGCCGCAATGGCAAACCTGGTACCTAAG
1 AACCCGATGCCATGAAGATTTTAAGGGAAAAGGTTGATGCCACAATGGCAAACCTGGTACCTAAG
*
8220412 AAAAATATGAAGGGAAAGATTGAGGCCGCAACGGC
66 AAAAATATGAAGGGAAAGATTGAGGCTGCAACGGC
8220447 AAACCTGGTA
Statistics
Matches: 214, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
137 27 0.13
138 28 0.13
139 159 0.74
ACGTcount: A:0.36, C:0.16, G:0.29, T:0.19
Consensus pattern (139 bp):
AACCCGATGCCATGAAGATTTTAAGGGAAAAGGTTGATGCCACAATGGCAAACCTGGTACCTAAG
AAAAATATGAAGGGAAAGATTGAGGCTGCAACGGCGAATCCGGTACCATTAAATGTGATGGGAAA
AGTTGAGGG
Found at i:8221227 original size:209 final size:208
Alignment explanation
Indices: 8220858--8221446 Score: 919
Period size: 209 Copynumber: 2.8 Consensus size: 208
8220848 AAAGCGATCA
*
8220858 TCTTCCTGATGAGATACAGAGAAACGAATTAAAACAAGTGATACGGTCATCTTCTTGATGAGATA
1 TCTTCCTGATGAGATACAGAGAAACG-ATTAAAACAAGTGATACGGTCATCTTCCTGATGAGATA
* * * * *
8220923 CTGATAAGTAGATCAAATCAATGAAACAAAGTTCAATGTGAGCGAAACTTCGAACCCCAGCTTCC
65 CAGAGAAGTATACCAAATCAATGAAACAAAGCTCAATGTGAGCGAAACTTCGAACCCCAGCTTCC
* * *
8220988 TGATGAGACACTGAGAAGCAAGTCGAAGCAATTAAATGGTGGTCTTCCTGATGAGATACAGAGAA
130 TGATGAGATACTGAGAAGCAGGTCGAAGCAATTAAATGGTCGTCTTCCTGATGAGATACAGAGAA
* *
8221053 GTGGACTAAATCCG
195 ATGGACCAAATCCG
* *
8221067 TCTTCTTGATGAGATACAGAGAAACAGATTGAAACAAGTGATACGGTCATCTTCCTGATGAGATA
1 TCTTCCTGATGAGATACAGAGAAAC-GATTAAAACAAGTGATACGGTCATCTTCCTGATGAGATA
* * * *
8221132 CAGAGAAGTATACCAAATCAATGAAATAAAGCTCAATGTGAGCGAAACCTCAAACCCCAACTTCC
65 CAGAGAAGTATACCAAATCAATGAAACAAAGCTCAATGTGAGCGAAACTTCGAACCCCAGCTTCC
* * *
8221197 TGATGAGATATTGAGAAGCAGGTAGAAGCAATAAAATGGTCGTCTTCCTGATGAGATACAGAGAA
130 TGATGAGATACTGAGAAGCAGGTCGAAGCAATTAAATGGTCGTCTTCCTGATGAGATACAGAGAA
8221262 ATGGACCAAATCCG
195 ATGGACCAAATCCG
** *
8221276 TCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGATA
1 TCTTCCTGATGAGATACAGAGAA-ACGATTAAAACAAGTGATACGGTCATCTTCCTGATGAGATA
*
8221341 CAGAGAAGTATACCAAATCAATGAAACAAAGCTCAATGTGAGCGAAACTTCGAACCCCAGCTTCT
65 CAGAGAAGTATACCAAATCAATGAAACAAAGCTCAATGTGAGCGAAACTTCGAACCCCAGCTTCC
8221406 TGATGAGATACTGAGAAGCAGGTCGAAGCAA-TAAAGTGGTC
130 TGATGAGATACTGAGAAGCAGGTCGAAGCAATTAAA-TGGTC
8221447 ACCAAATCTG
Statistics
Matches: 344, Mismatches: 33, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
208 3 0.01
209 340 0.99
210 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (208 bp):
TCTTCCTGATGAGATACAGAGAAACGATTAAAACAAGTGATACGGTCATCTTCCTGATGAGATAC
AGAGAAGTATACCAAATCAATGAAACAAAGCTCAATGTGAGCGAAACTTCGAACCCCAGCTTCCT
GATGAGATACTGAGAAGCAGGTCGAAGCAATTAAATGGTCGTCTTCCTGATGAGATACAGAGAAA
TGGACCAAATCCG
Found at i:8221860 original size:7 final size:7
Alignment explanation
Indices: 8221848--8221872 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8221838 AAATGAACCC
8221848 AATTTTA
1 AATTTTA
8221855 AATTTTA
1 AATTTTA
8221862 AATTTTA
1 AATTTTA
8221869 AATT
1 AATT
8221873 ATTTAAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
AATTTTA
Found at i:8221934 original size:6 final size:6
Alignment explanation
Indices: 8221925--8221974 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
8221915 TTGGATTTAT
* *
8221925 TTTAAA TTTAAA TTT-AT TTTAAA TTTAAA TTT-AT TTTAAA -TTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
8221970 TTTAA
1 TTTAA
8221975 TCTTTAAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
5 13 0.35
6 24 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:8221939 original size:17 final size:17
Alignment explanation
Indices: 8221856--8221973 Score: 125
Period size: 17 Copynumber: 7.1 Consensus size: 17
8221846 CCAATTTTAA
8221856 ATTTTAAATTTTAAA-TT
1 ATTTTAAA-TTTAAATTT
* *
8221873 A-TTTAAGTTTGAATTT
1 ATTTTAAATTTAAATTT
* * *
8221889 ACTCTAAATTTAAACTT
1 ATTTTAAATTTAAATTT
* * **
8221906 ATTTTGAGTTTGGATTT
1 ATTTTAAATTTAAATTT
8221923 ATTTTAAATTTAAATTT
1 ATTTTAAATTTAAATTT
8221940 ATTTTAAATTTAAATTT
1 ATTTTAAATTTAAATTT
8221957 ATTTTAAA-TTAAATTT
1 ATTTTAAATTTAAATTT
8221973 A
1 A
8221974 ATCTTTAAAA
Statistics
Matches: 82, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
15 5 0.06
16 17 0.21
17 60 0.73
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:8221945 original size:11 final size:12
Alignment explanation
Indices: 8221925--8221974 Score: 61
Period size: 11 Copynumber: 4.4 Consensus size: 12
8221915 TTGGATTTAT
8221925 TTTAAATTTAAA
1 TTTAAATTTAAA
*
8221937 TTT-ATTTTAAA
1 TTTAAATTTAAA
*
8221948 TTTAAATTT-AT
1 TTTAAATTTAAA
8221959 TTTAAA-TTAAA
1 TTTAAATTTAAA
8221970 TTTAA
1 TTTAA
8221975 TCTTTAAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
10 2 0.06
11 23 0.72
12 7 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TTTAAATTTAAA
Found at i:8223574 original size:30 final size:30
Alignment explanation
Indices: 8223514--8223876 Score: 308
Period size: 30 Copynumber: 12.2 Consensus size: 30
8223504 AGAAATCATG
*
8223514 TTTTGACCCCTAAACTTC-CAAAAATTACA
1 TTTTAACCCCTAAACTTCTCAAAAATTACA
* * *
8223543 TTTTAACCCCTACACTTCTTAAAAATCACA
1 TTTTAACCCCTAAACTTCTCAAAAATTACA
8223573 TTTTAA-CCCTCAAACTTCTCAAAAATTACA
1 TTTTAACCCCT-AAACTTCTCAAAAATTACA
8223603 TTTTAACCCCTAAACTT-TCTAAAAATTACA
1 TTTTAACCCCTAAACTTCTC-AAAAATTACA
*
8223633 TTTTAACCCTTAAACTTC-CTAAAAA-T-CA
1 TTTTAACCCCTAAACTTCTC-AAAAATTACA
**
8223661 TGCTTTAACATCTAAACTTCTCAAAAATTACA
1 T--TTTAACCCCTAAACTTCTCAAAAATTACA
*
8223693 TTTTAACCCTTAAACTT-TCCAAAAATTACA
1 TTTTAACCCCTAAACTTCT-CAAAAATTACA
* * *
8223723 TTTTGA-CCCTCAAA-TTTTCCAAAAATTACC
1 TTTTAACCCCT-AAACTTCT-CAAAAATTACA
*
8223753 TTTTGACACCC-AAACTT-TCCAAAAATTA-A
1 TTTTAAC-CCCTAAACTTCT-CAAAAATTACA
* * * *
8223782 TTTTTACCCTTTAATTTC-CTAAAAATTACA
1 TTTTAACCCCTAAACTTCTC-AAAAATTACA
*
8223812 TTTTGACCCCTAAACTT-TCTAAAAATTACA
1 TTTTAACCCCTAAACTTCTC-AAAAATTACA
* * *
8223842 TTTTTA-CGCTAAACTT-TCCAAAATTTACTA
1 TTTTAACCCCTAAACTTCT-CAAAAATTAC-A
8223872 TTTTA
1 TTTTA
8223877 CCCTCGAACA
Statistics
Matches: 281, Mismatches: 30, Indels: 45
0.79 0.08 0.13
Matches are distributed among these distances:
28 6 0.02
29 65 0.23
30 196 0.70
31 8 0.03
32 6 0.02
ACGTcount: A:0.37, C:0.24, G:0.02, T:0.37
Consensus pattern (30 bp):
TTTTAACCCCTAAACTTCTCAAAAATTACA
Found at i:8223678 original size:90 final size:89
Alignment explanation
Indices: 8223514--8223837 Score: 347
Period size: 90 Copynumber: 3.6 Consensus size: 89
8223504 AGAAATCATG
* * * *
8223514 TTTTGACCCCTAAAC-TTCCAAAAATTACATTTTAACCCCTACACTTCTTAAAAATCACATTTTA
1 TTTTAACCCCTAAACTTTCCAAAAATTACATTTTAACCCCTAAACTTCCTAAAAATCA-ACTTTA
8223578 AC-CCTCAAACTTCTCAAAAATTACA
65 ACACCT-AAACTTCTCAAAAATTACA
* * *
8223603 TTTTAACCCCTAAACTTTCTAAAAATTACATTTTAACCCTTAAACTTCCTAAAAATCATGCTTTA
1 TTTTAACCCCTAAACTTTCCAAAAATTACATTTTAACCCCTAAACTTCCTAAAAATCA-ACTTTA
*
8223668 ACATCTAAACTTCTCAAAAATTACA
65 ACACCTAAACTTCTCAAAAATTACA
* * * * *
8223693 TTTTAACCCTTAAACTTTCCAAAAATTACATTTTGA-CCCTCAAATTTTCC-AAAAATTACCTTT
1 TTTTAACCCCTAAACTTTCCAAAAATTACATTTTAACCCCT-AAA-CTTCCTAAAAATCAAC-TT
* *
8223756 TGACACCCAAACTT-TCCAAAAATTA-A
63 TAACACCTAAACTTCT-CAAAAATTACA
* * * * *
8223782 TTTTTACCCTTTAA-TTTCCTAAAAATTACATTTTGACCCCTAAACTTTCTAAAAAT
1 TTTTAACCCCTAAACTTTCC-AAAAATTACATTTTAACCCCTAAACTTCCTAAAAAT
8223838 TACATTTTTA
Statistics
Matches: 203, Mismatches: 23, Indels: 18
0.83 0.09 0.07
Matches are distributed among these distances:
88 8 0.04
89 57 0.28
90 132 0.65
91 6 0.03
ACGTcount: A:0.38, C:0.25, G:0.02, T:0.36
Consensus pattern (89 bp):
TTTTAACCCCTAAACTTTCCAAAAATTACATTTTAACCCCTAAACTTCCTAAAAATCAACTTTAA
CACCTAAACTTCTCAAAAATTACA
Found at i:8223923 original size:29 final size:29
Alignment explanation
Indices: 8223682--8224024 Score: 115
Period size: 30 Copynumber: 11.7 Consensus size: 29
8223672 CTAAACTTCT
** *
8223682 CAAAAATTA-CATTTTAACCCTTAAACTTTC
1 CAAAAATTACCATTTT-ACCCTCGAA-TGTC
* *
8223712 CAAAAATTA-CATTTTGACCCTCAAATTTTC
1 CAAAAATTACCATTTT-ACCCTCGAA-TGTC
* *
8223742 CAAAAATTACC-TTTTGACACC-CAAACTTTC
1 CAAAAATTACCATTTT-AC-CCTCGAA-TGTC
** *
8223772 CAAAAATTA--ATTTTTACCCTTTAATTTC
1 CAAAAATTACCA-TTTTACCCTCGAATGTC
* *
8223800 CTAAAAATTA-CATTTTGACCC-CTAAACTTTC
1 C-AAAAATTACCATTTT-ACCCTC-GAA-TGTC
* * * *
8223831 TAAAAATTA-CATTTTTACGCT-AAACTTTC
1 CAAAAATTACCA-TTTTACCCTCGAA-TGTC
* * **
8223860 CAAAATTTACTATTTTACCCTCGAA-CAC
1 CAAAAATTACCATTTTACCCTCGAATGTC
8223888 CTAAAAATTACCATTTTACCCTCGAATGTC
1 C-AAAAATTACCATTTTACCCTCGAATGTC
* * * *
8223918 CCAAAATTA-CATTTTTGGCCCT-AAACTTTTC
1 CAAAAATTACCA-TTTT-ACCCTCGAA--TGTC
* **
8223949 C-AAAATTACCA-TTTACTCTCGAACATC
1 CAAAAATTACCATTTTACCCTCGAATGTC
* * *
8223976 CAAAAATTATCATTTTACTC-CGAGTGTC
1 CAAAAATTACCATTTTACCCTCGAATGTC
* *
8224004 CAAAAATTACCGTTTTGCCCT
1 CAAAAATTACCATTTTACCCT
8224025 TGGCATCCAA
Statistics
Matches: 250, Mismatches: 38, Indels: 51
0.74 0.11 0.15
Matches are distributed among these distances:
27 3 0.01
28 44 0.18
29 86 0.34
30 100 0.40
31 17 0.07
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.36
Consensus pattern (29 bp):
CAAAAATTACCATTTTACCCTCGAATGTC
Found at i:8223970 original size:87 final size:86
Alignment explanation
Indices: 8223710--8224013 Score: 253
Period size: 89 Copynumber: 3.5 Consensus size: 86
8223700 CCTTAAACTT
* * * * *
8223710 TCCAAAAATTA-CATTTTGACCCTCAAATTTTCCAAAAATTACCTTTTGACACCCAAACTTTCCA
1 TCCAAAAATTACCATTTT-ACCC-CGAA-TGTCCAAAAATTACATTTTTAC-CCTAAACTTTCCA
* ** **
8223774 AAAATTA--ATTTTTACCCTTTAATT
62 AAATTTACCA-TTTTACCCTCGAACA
* * * *
8223798 TCCTAAAAATTA-CATTTTGACCCCTAAACTTTCTAAAAATTACATTTTTACGCTAAACTTTCCA
1 TCC-AAAAATTACCATTTT-ACCCC-GAA-TGTCCAAAAATTACATTTTTACCCTAAACTTTCCA
*
8223862 AAATTTACTATTTTACCCTCGAACA
62 AAATTTACCATTTTACCCTCGAACA
* *
8223887 -CCTAAAAATTACCATTTTACCCTCGAATGTCCCAAAATTACATTTTTGGCCCTAAACTTTTCCA
1 TCC-AAAAATTACCATTTTACCC-CGAATGTCCAAAAATTACATTTTT-ACCCTAAAC-TTTCCA
*
8223951 AAA-TTACCA-TTTACTCTCGAACA
62 AAATTTACCATTTTACCCTCGAACA
* * *
8223974 TCCAAAAATTATCATTTTACTCCGAGTGTCCAAAAATTAC
1 TCCAAAAATTACCATTTTACCCCGAATGTCCAAAAATTAC
8224014 CGTTTTGCCC
Statistics
Matches: 184, Mismatches: 23, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
86 16 0.09
87 47 0.26
88 52 0.28
89 68 0.37
90 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.36
Consensus pattern (86 bp):
TCCAAAAATTACCATTTTACCCCGAATGTCCAAAAATTACATTTTTACCCTAAACTTTCCAAAAT
TTACCATTTTACCCTCGAACA
Found at i:8223989 original size:28 final size:28
Alignment explanation
Indices: 8223950--8224019 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
8223940 AAACTTTTCC
8223950 AAAATTACCA-TTTACTCTCGAACATCCA
1 AAAATTACCATTTTACTC-CGAACATCCA
* ***
8223978 AAAATTATCATTTTACTCCGAGTGTCCA
1 AAAATTACCATTTTACTCCGAACATCCA
*
8224006 AAAATTACCGTTTT
1 AAAATTACCATTTT
8224020 GCCCTTGGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 28 0.80
29 7 0.20
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (28 bp):
AAAATTACCATTTTACTCCGAACATCCA
Found at i:8227780 original size:43 final size:43
Alignment explanation
Indices: 8227719--8227901 Score: 217
Period size: 44 Copynumber: 4.2 Consensus size: 43
8227709 ATAAATGGTG
* *
8227719 GACTCATGTCTCGAGATGAGCATGAGATTATGTATAAATGGAA
1 GACTCATGTCTCGGGATGAGCATGAGATTATGTATAAAAGGAA
* * *
8227762 GACTTATGACTCGGGATGAGCATGAGAATTGA-GTATAAAAAGAA
1 GACTCATGTCTCGGGATGAGCATGAG-ATT-ATGTATAAAAGGAA
* * *
8227806 GACTCATGTCTCAGGATGAGCATGAGATTACGAATAAAAAGGAA
1 GACTCATGTCTCGGGATGAGCATGAGATTATGTAT-AAAAGGAA
* *
8227850 GACTCATGTCTCGGGGTGAGCATAAGATTATG-ATTAAAAGGAA
1 GACTCATGTCTCGGGATGAGCATGAGATTATGTA-TAAAAGGAA
*
8227893 GACTTATGT
1 GACTCATGT
8227902 TGTAACAGCC
Statistics
Matches: 120, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.01
43 46 0.38
44 72 0.60
45 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.25
Consensus pattern (43 bp):
GACTCATGTCTCGGGATGAGCATGAGATTATGTATAAAAGGAA
Found at i:8227888 original size:87 final size:87
Alignment explanation
Indices: 8227719--8227901 Score: 228
Period size: 87 Copynumber: 2.1 Consensus size: 87
8227709 ATAAATGGTG
* * * *
8227719 GACTCATGTCTCGAGATGAGCATGAGATTATGTATAAATGGAAGACTTATGACTCGGGATGAGCA
1 GACTCATGTCTCGAGATGAGCATGAGATTACGAATAAAAGGAAGACTCATGACTCGGGATGAGCA
*
8227784 TGAGAATTGAGTATAAAAAGAA
66 TAAGAATTGAGTATAAAAAGAA
* *
8227806 GACTCATGTCTC-AGGATGAGCATGAGATTACGAATAAAAAGGAAGACTCATGTCTCGGGGTGAG
1 GACTCATGTCTCGA-GATGAGCATGAGATTACGAAT-AAAAGGAAGACTCATGACTCGGGATGAG
* *
8227870 CATAAGATTATGA-T-TAAAAGGAA
64 CATAAGAAT-TGAGTATAAAAAGAA
*
8227893 GACTTATGT
1 GACTCATGT
8227902 TGTAACAGCC
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
86 1 0.01
87 47 0.57
88 32 0.39
89 3 0.04
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.25
Consensus pattern (87 bp):
GACTCATGTCTCGAGATGAGCATGAGATTACGAATAAAAGGAAGACTCATGACTCGGGATGAGCA
TAAGAATTGAGTATAAAAAGAA
Done.