Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 33 of 143
Found at i:9715205 original size:3 final size:3
Alignment explanation
Indices: 9715197--9715228 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
9715187 TTTATTTCCT
9715197 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9715229 TCATTTCACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9721825 original size:41 final size:41
Alignment explanation
Indices: 9721751--9722017 Score: 266
Period size: 41 Copynumber: 6.4 Consensus size: 41
9721741 TTATGCTCTA
* * ** *
9721751 TCGAGTCATAAGTCTTCCTTTAACCATATTCTCATTCTCATC
1 TCGAGACATGAGTCTTCC-TTATTCATAATCTCATTCTCATC
* * * * *
9721793 TTGAGACATTAGTCGTCCTTAATCTTAATCTCATTCTCATC
1 TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTCATC
*
9721834 TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTCAGC
1 TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTCATC
*
9721875 TCGAGATATGAGTCTTCCTTATTCATAATCTCATTCTCATC
1 TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTCATC
* * * * *
9721916 TCGAGATATGAGTCTTCCTTATTCATAATCCCATGCTCGTTT
1 TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTC-ATC
* * * * *
9721958 TCGAGTCACGAGTCTTCCATTTATACA-AATTCTCATGCTCAAC
1 TCGAGACATGAGTCTTCC--TTATTCATAA-TCTCATTCTCATC
* *
9722001 CCGTGACATGAGTCTTC
1 TCGAGACATGAGTCTTC
9722018 ATTTTTATAA
Statistics
Matches: 190, Mismatches: 31, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
41 130 0.68
42 30 0.16
43 15 0.08
44 15 0.08
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (41 bp):
TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTCATC
Found at i:9722811 original size:22 final size:21
Alignment explanation
Indices: 9722764--9722811 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
9722754 GACTTTCATA
*
9722764 ATTAACTTAATTAATCATCTT
1 ATTAACTTAATTAATCATATT
* *
9722785 TTTAACCTTAATTAATCCTATT
1 ATTAA-CTTAATTAATCATATT
9722807 ATTAA
1 ATTAA
9722812 TCAGTATTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTAACTTAATTAATCATATT
Found at i:9734412 original size:41 final size:41
Alignment explanation
Indices: 9734341--9734600 Score: 288
Period size: 41 Copynumber: 6.2 Consensus size: 41
9734331 TTGAGTCATA
* * *
9734341 AGTCTTCCTTTAACCATATTATCATTCTCATCTCGAGACATG
1 AGTCTTCC-TTAATCATAATCTCATTCTCATCTCGAGACATG
* * *
9734383 AGTCTTCCTTAATCTTAATCTCATTCTCATCTTGGGACATG
1 AGTCTTCCTTAATCATAATCTCATTCTCATCTCGAGACATG
*
9734424 AGTCTTCCTTAATCATAATCTCATTCTCATCTCGAGATATG
1 AGTCTTCCTTAATCATAATCTCATTCTCATCTCGAGACATG
* * *
9734465 AGTCTTCCTTATTCATAATCTCATTCTCATCTTGAGATATG
1 AGTCTTCCTTAATCATAATCTCATTCTCATCTCGAGACATG
* * * * *
9734506 AGTCTTCCTTATTCATAATCTCATGCTCATTTCCGAGTCACG
1 AGTCTTCCTTAATCATAATCTCATTCTCATCT-CGAGACATG
* ** * *
9734548 AGTCTTCCATTTATACA-AATTCTCATGGTCAACCCGAGACATG
1 AGTCTTCC-TTAAT-CATAA-TCTCATTCTCATCTCGAGACATG
9734591 AGTCTTCCTT
1 AGTCTTCCTT
9734601 TTTATACAGC
Statistics
Matches: 188, Mismatches: 26, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
41 133 0.71
42 23 0.12
43 20 0.11
44 12 0.06
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (41 bp):
AGTCTTCCTTAATCATAATCTCATTCTCATCTCGAGACATG
Found at i:9735451 original size:22 final size:21
Alignment explanation
Indices: 9735404--9735451 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
9735394 GATTTTCGTA
* *
9735404 ATTAACTTAATTAATTATCTT
1 ATTAACTTAATTAATCATATT
* *
9735425 TTTAACCTTAATTAATCCTATT
1 ATTAA-CTTAATTAATCATATT
9735447 ATTAA
1 ATTAA
9735452 TCAATATTTG
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTAACTTAATTAATCATATT
Found at i:9737196 original size:11 final size:11
Alignment explanation
Indices: 9737180--9737204 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9737170 AAGTTGATGC
9737180 ATAATCTATGG
1 ATAATCTATGG
9737191 ATAATCTATGG
1 ATAATCTATGG
9737202 ATA
1 ATA
9737205 GTGGATTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (11 bp):
ATAATCTATGG
Found at i:9738217 original size:24 final size:22
Alignment explanation
Indices: 9738156--9738224 Score: 66
Period size: 24 Copynumber: 3.0 Consensus size: 22
9738146 ATAATCTTCT
*
9738156 AATTAAACTATTTATTTCTTTC
1 AATTAAACTATTTATTTGTTTC
* *
9738178 AATTAAATTTTGTTTATTTGTTTC
1 AATTAAA--CTATTTATTTGTTTC
*
9738202 AATTAAACTCCATTTAGTTGTTT
1 AATTAAACT--ATTTATTTGTTT
9738225 TAGTCAAACT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 8 0.22
24 29 0.78
ACGTcount: A:0.29, C:0.10, G:0.06, T:0.55
Consensus pattern (22 bp):
AATTAAACTATTTATTTGTTTC
Found at i:9740172 original size:24 final size:24
Alignment explanation
Indices: 9740140--9740186 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
9740130 ATAATCTTCT
*
9740140 AATTAAACTCTGTTTATTTGTTTG
1 AATTAAACTCTATTTATTTGTTTG
9740164 AATTAAACTCTATTTATTTGTTT
1 AATTAAACTCTATTTATTTGTTT
9740187 CAGTCAAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.55
Consensus pattern (24 bp):
AATTAAACTCTATTTATTTGTTTG
Found at i:9744898 original size:11 final size:11
Alignment explanation
Indices: 9744879--9744911 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
9744869 TTAGGATATT
9744879 ATTTATATTTA
1 ATTTATATTTA
*
9744890 ATTTGTATTTA
1 ATTTATATTTA
9744901 ATTTATATTTA
1 ATTTATATTTA
9744912 TCTTTTTAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (11 bp):
ATTTATATTTA
Found at i:9744924 original size:14 final size:14
Alignment explanation
Indices: 9744902--9744931 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9744892 TTGTATTTAA
*
9744902 TTTATATTTATCTT
1 TTTAGATTTATCTT
9744916 TTTAGATTTATCTT
1 TTTAGATTTATCTT
9744930 TT
1 TT
9744932 AAAGTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (14 bp):
TTTAGATTTATCTT
Found at i:9746827 original size:13 final size:14
Alignment explanation
Indices: 9746809--9746838 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
9746799 ACTTAAAACC
9746809 AAACCAAAA-TAAT
1 AAACCAAAATTAAT
9746822 AAACCAAAATTAAT
1 AAACCAAAATTAAT
9746836 AAA
1 AAA
9746839 AATTAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (14 bp):
AAACCAAAATTAAT
Found at i:9748479 original size:5 final size:5
Alignment explanation
Indices: 9748469--9748515 Score: 51
Period size: 5 Copynumber: 9.0 Consensus size: 5
9748459 TTGAATCCTA
*
9748469 TTTAT TTTAT TTTAT TTCTTT TTTA- TTTAT TTAATAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TT-TAT TTTAT TTTAT TT--TAT TTTAT TTTAT
9748516 GTGATTTCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
4 4 0.11
5 23 0.64
6 4 0.11
7 5 0.14
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:9748494 original size:16 final size:17
Alignment explanation
Indices: 9748471--9748515 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
9748461 GAATCCTATT
*
9748471 TATTTTATTTTATTT-C
1 TATTTTATTTTATTTAA
*
9748487 TTTTTTA-TTTATTTAA
1 TATTTTATTTTATTTAA
9748503 TATTTTATTTTAT
1 TATTTTATTTTAT
9748516 GTGATTTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 7 0.29
16 12 0.50
17 5 0.21
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (17 bp):
TATTTTATTTTATTTAA
Found at i:9753441 original size:7 final size:6
Alignment explanation
Indices: 9753420--9753490 Score: 56
Period size: 6 Copynumber: 11.7 Consensus size: 6
9753410 TAAAAAATAA
* * * *
9753420 AAAAAG GAAGAG AAAAAGG AAAAA- ACAAAG AAAAAGG AAAAAG TAAAAG
1 AAAAAG AAAAAG AAAAA-G AAAAAG AAAAAG AAAAA-G AAAAAG AAAAAG
*
9753469 AAAAA- AAGAAGG AAAAAG AAAA
1 AAAAAG AA-AAAG AAAAAG AAAA
9753491 GGAGATGTCG
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
5 6 0.12
6 30 0.60
7 14 0.28
ACGTcount: A:0.76, C:0.01, G:0.21, T:0.01
Consensus pattern (6 bp):
AAAAAG
Found at i:9753442 original size:19 final size:18
Alignment explanation
Indices: 9753420--9753473 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
9753410 TAAAAAATAA
*
9753420 AAAAAGGAAGAGAAAAAGG
1 AAAAAGCAA-AGAAAAAGG
*
9753439 AAAAAACAAAGAAAAAGG
1 AAAAAGCAAAGAAAAAGG
*
9753457 AAAAAGTAAAAGAAAAA
1 AAAAAG-CAAAGAAAAA
9753474 AAGAAGGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (18 bp):
AAAAAGCAAAGAAAAAGG
Found at i:9754684 original size:146 final size:147
Alignment explanation
Indices: 9754414--9754872 Score: 613
Period size: 146 Copynumber: 3.1 Consensus size: 147
9754404 AATGTTGAAT
* *
9754414 CTTATAACC-TAGAGATGTGGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTATACCTTAGAGA
1 CTTAT-ACCTTAGAGATGTGGAGAGAAAGGTTGAAGCCGTAACGGCGAACCTTATACCTTAGAGA
* * ** * *
9754478 TGTGATGGGAAAGATTGAAGCCACAACGGTGAATCTTGTACCCTAAAGATATGGAGGGAAAGGTT
65 TATGATAGGAAAGATTGAAGCCGTAACGGCGAATCTTGTACCCTAGAGATATGGAGGGAAAGGTT
*
9754543 AAAGCCGCAACGACGAAC
130 GAAGCCGCAACGACGAAC
*
9754561 CTTATACC-TAGAGATGTGGAGAGAAAGGTTGAAGCCGTAACGGTGAACCTTATACCTTAGAGAT
1 CTTATACCTTAGAGATGTGGAGAGAAAGGTTGAAGCCGTAACGGCGAACCTTATACCTTAGAGAT
* * * *
9754625 ATGATAGGAAAGATTGAAGCCGTAACGACAAATCTTGTACCATAGAGATATGAAGGGAAAGGTTG
66 ATGATAGGAAAGATTGAAGCCGTAACGGCGAATCTTGTACCCTAGAGATATGGAGGGAAAGGTTG
9754690 AAGCCGCAACGACGAAC
131 AAGCCGCAACGACGAAC
* * * *
9754707 CTTATACCTTAGAGATGT-GATGAGAAAGATTGAAGCCGTAACGACGAATCTTGTAACC-TAGAG
1 CTTATACCTTAGAGATGTGGA-GAGAAAGGTTGAAGCCGTAACGGCGAACCTTAT-ACCTTAGAG
* * * * *
9754770 ATATGA-AGGGAAAGGTTGAAGCCGTAATGGCGAACCTTATACCCTAGAGATGTGGAGGGAAAGG
64 ATATGATA-GGAAAGATTGAAGCCGTAACGGCGAATCTTGTACCCTAGAGATATGGAGGGAAAGG
* * *
9754834 TTGAAGCCGCCATGATGAAC
128 TTGAAGCCGCAACGACGAAC
9754854 CTTATACCTTAGAGATGTG
1 CTTATACCTTAGAGATGTG
9754873 AAGGGAAATA
Statistics
Matches: 276, Mismatches: 31, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
146 138 0.50
147 135 0.49
148 3 0.01
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (147 bp):
CTTATACCTTAGAGATGTGGAGAGAAAGGTTGAAGCCGTAACGGCGAACCTTATACCTTAGAGAT
ATGATAGGAAAGATTGAAGCCGTAACGGCGAATCTTGTACCCTAGAGATATGGAGGGAAAGGTTG
AAGCCGCAACGACGAAC
Found at i:9754791 original size:147 final size:146
Alignment explanation
Indices: 9754414--9754887 Score: 603
Period size: 147 Copynumber: 3.2 Consensus size: 146
9754404 AATGTTGAAT
* * *
9754414 CTTATAACCTAGAGATGTGGAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTATACCTTAGAGAT
1 CTTAT-ACCTAGAGATGTGGAGAGAAAGATTGAAGCCGTAACGGCGAACCTTATACCTTAGAGAT
* * ** * * *
9754479 GTGATGGGAAAGATTGAAGCCACAACGGTGAATCTTGTACCCTAAAGATATGGAGGGAAAGGTTA
65 ATGAAGGGAAAGATTGAAGCCGTAACGGCGAATCTTGTACCCTAGAGATATGGAGGGAAAGGTTG
9754544 AAGCCGCAACGACGAAC
130 AAGCCGCAACGACGAAC
* *
9754561 CTTATACCTAGAGATGTGGAGAGAAAGGTTGAAGCCGTAACGGTGAACCTTATACCTTAGAGATA
1 CTTATACCTAGAGATGTGGAGAGAAAGATTGAAGCCGTAACGGCGAACCTTATACCTTAGAGATA
* * * *
9754626 TGATA-GGAAAGATTGAAGCCGTAACGACAAATCTTGTACCATAGAGATATGAAGGGAAAGGTTG
66 TGA-AGGGAAAGATTGAAGCCGTAACGGCGAATCTTGTACCCTAGAGATATGGAGGGAAAGGTTG
9754690 AAGCCGCAACGACGAAC
130 AAGCCGCAACGACGAAC
* * *
9754707 CTTATACCTTAGAGATGT-GATGAGAAAGATTGAAGCCGTAACGACGAATCTTGTAACC-TAGAG
1 CTTATACC-TAGAGATGTGGA-GAGAAAGATTGAAGCCGTAACGGCGAACCTTAT-ACCTTAGAG
* * * * *
9754770 ATATGAAGGGAAAGGTTGAAGCCGTAATGGCGAACCTTATACCCTAGAGATGTGGAGGGAAAGGT
63 ATATGAAGGGAAAGATTGAAGCCGTAACGGCGAATCTTGTACCCTAGAGATATGGAGGGAAAGGT
* * *
9754835 TGAAGCCGCCATGATGAAC
128 TGAAGCCGCAACGACGAAC
* * *
9754854 CTTATACCTTAGAGATGTGAAGGGAAATATTGAA
1 CTTATACC-TAGAGATGTGGAGAGAAAGATTGAA
9754888 ACCGCAATGG
Statistics
Matches: 287, Mismatches: 34, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
146 137 0.48
147 146 0.51
148 4 0.01
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (146 bp):
CTTATACCTAGAGATGTGGAGAGAAAGATTGAAGCCGTAACGGCGAACCTTATACCTTAGAGATA
TGAAGGGAAAGATTGAAGCCGTAACGGCGAATCTTGTACCCTAGAGATATGGAGGGAAAGGTTGA
AGCCGCAACGACGAAC
Found at i:9754908 original size:49 final size:49
Alignment explanation
Indices: 9754414--9754894 Score: 502
Period size: 49 Copynumber: 9.8 Consensus size: 49
9754404 AATGTTGAAT
* *
9754414 CTTATAACC-TAGAGATGTGGAGGGAAAGGTTGAAGCCGCAACGGCGAAC
1 CTTAT-ACCTTAGAGATGTGAAGGGAAAGGTTGAAGCCGCAACGACGAAC
* * * ** *
9754463 CTTATACCTTAGAGATGTGATGGGAAAGATTGAAGCCACAACGGTGAAT
1 CTTATACCTTAGAGATGTGAAGGGAAAGGTTGAAGCCGCAACGACGAAC
* * * * * *
9754512 CTTGTACCCTAAAGATATGGAGGGAAAGGTTAAAGCCGCAACGACGAAC
1 CTTATACCTTAGAGATGTGAAGGGAAAGGTTGAAGCCGCAACGACGAAC
* * * **
9754561 CTTATACC-TAGAGATGTGGAGAGAAAGGTTGAAGCCGTAACGGTGAAC
1 CTTATACCTTAGAGATGTGAAGGGAAAGGTTGAAGCCGCAACGACGAAC
* * * * *
9754609 CTTATACCTTAGAGATATGATA-GGAAAGATTGAAGCCGTAACGACAAAT
1 CTTATACCTTAGAGATGTGA-AGGGAAAGGTTGAAGCCGCAACGACGAAC
* * *
9754658 CTTGTACCATAGAGATATGAAGGGAAAGGTTGAAGCCGCAACGACGAAC
1 CTTATACCTTAGAGATGTGAAGGGAAAGGTTGAAGCCGCAACGACGAAC
* * * * *
9754707 CTTATACCTTAGAGATGTGATGAGAAAGATTGAAGCCGTAACGACGAAT
1 CTTATACCTTAGAGATGTGAAGGGAAAGGTTGAAGCCGCAACGACGAAC
* * * * *
9754756 CTTGTAACC-TAGAGATATGAAGGGAAAGGTTGAAGCCGTAATGGCGAAC
1 CTTAT-ACCTTAGAGATGTGAAGGGAAAGGTTGAAGCCGCAACGACGAAC
* * * * *
9754805 CTTATACCCTAGAGATGTGGAGGGAAAGGTTGAAGCCGCCATGATGAAC
1 CTTATACCTTAGAGATGTGAAGGGAAAGGTTGAAGCCGCAACGACGAAC
** *
9754854 CTTATACCTTAGAGATGTGAAGGGAAATATTGAAACCGCAA
1 CTTATACCTTAGAGATGTGAAGGGAAAGGTTGAAGCCGCAA
9754895 TGGCGAGTCT
Statistics
Matches: 357, Mismatches: 69, Indels: 12
0.82 0.16 0.03
Matches are distributed among these distances:
48 48 0.13
49 305 0.85
50 4 0.01
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21
Consensus pattern (49 bp):
CTTATACCTTAGAGATGTGAAGGGAAAGGTTGAAGCCGCAACGACGAAC
Found at i:9755396 original size:189 final size:190
Alignment explanation
Indices: 9755104--9755525 Score: 575
Period size: 189 Copynumber: 2.2 Consensus size: 190
9755094 AACGTCCCTG
* * * * *
9755104 AGGTTATAGTGGAGTGGAGTGAACCACCAAAATCCTATACCCTTGAGTTGGAGTGGGTCAGATGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACCAAAATCTTATACCCTCGAGTTGGAGTGAGTCAGATGA
* * *
9755169 AAATAATAAAGCATAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGGCTTCAAATCCCA
66 AAACAACAAAGCATAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCA
* *
9755234 TCTTCCTAGTGAGGTACACAGAAGTGGG-TCAAAATAGATAGCAAATCTCAATGT-CTCTA
131 TCTTACTAGTGAGGTACAAAGAAGTGGGTTCAAAATAGATAGCAAATCTCAATGTCCT-TA
* * *
9755293 AGGTTACAGTGGAGTGGAGTGAAGCGCCAAAATCTTATACCCTCGAGTTGTAGTGAGTCAGATTA
1 AGGTTACAGTGGAGTGGAGTGAAGCACCAAAATCTTATACCCTCGAGTTGGAGTGAGTCAGATGA
* * *
9755358 AGACAACAAAGCAGT-GCTCAACGT-CTCTGAGTTTACAGTGGAGTGGAGTGAGACTTCAAATCT
66 AAACAACAAAGCA-TAGCTCAACGTCCT-TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC
* * * * *
9755421 CATCTTATTGGTGAGGTACAAAGAAGTGGGTTCAAAATAGGTAGCAGATCTCAATGTCCTTG
129 CATCTTACTAGTGAGGTACAAAGAAGTGGGTTCAAAATAGATAGCAAATCTCAATGTCCTTA
*
9755483 AGGTTACAGTGGAGTGGTGTGAAGCACC-AAATCTTATATCCCT
1 AGGTTACAGTGGAGTGGAGTGAAGCACCAAAATCTTATA-CCCT
9755526 GAAGTTGCAA
Statistics
Matches: 205, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
188 2 0.01
189 145 0.71
190 56 0.27
191 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (190 bp):
AGGTTACAGTGGAGTGGAGTGAAGCACCAAAATCTTATACCCTCGAGTTGGAGTGAGTCAGATGA
AAACAACAAAGCATAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCA
TCTTACTAGTGAGGTACAAAGAAGTGGGTTCAAAATAGATAGCAAATCTCAATGTCCTTA
Found at i:9755494 original size:96 final size:93
Alignment explanation
Indices: 9755185--9755504 Score: 230
Period size: 96 Copynumber: 3.4 Consensus size: 93
9755175 TAAAGCATAG
* * ** *
9755185 CTCAACGTC-CTTGAGGTTACAGTGGAGTGGAGTGAGGCTTCAAATCCCATCTTCCTAGTGAGGT
1 CTCAACGTCTC-TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCTCATCTTATTGGTGAGGT
*
9755249 ACACAGAAGTGGGTCAAAATAGATAGCAAAT
65 ACA-AGAAGTGGGTCAAAATAG-TAGCAGAT
* * ** * *
9755280 CTCAATGTCTCTAAGGTTACAGTGGAGTGGAGTGA-AGCGCCAAAATCTTATACCCTCGAGTTGT
1 CTCAACGTCTCTGAGGTTACAGTGGAGTGGAGTGAGA-CTTC-AAATCTCAT---CT-TA-TTG-
* ** * *
9755344 AGTGA-GT-C-AG-ATTAAGACAACA-A--AGCAG-T
58 -GTGAGGTACAAGAAGTGGGTCAAAATAGTAGCAGAT
*
9755373 GCTCAACGTCTCTGAGTTTACAGTGGAGTGGAGTGAGACTTCAAATCTCATCTTATTGGTGAGGT
1 -CTCAACGTCTCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCTCATCTTATTGGTGAGGT
9755438 ACAAAGAAGTGGGTTCAAAATAGGTAGCAGAT
65 AC-AAGAAGTGGG-TCAAAATA-GTAGCAGAT
* *
9755470 CTCAATGTC-CTTGAGGTTACAGTGGAGTGGTGTGA
1 CTCAACGTCTC-TGAGGTTACAGTGGAGTGGAGTGA
9755505 AGCACCAAAT
Statistics
Matches: 169, Mismatches: 32, Indels: 47
0.68 0.13 0.19
Matches are distributed among these distances:
86 4 0.02
87 2 0.01
88 4 0.02
89 1 0.01
90 4 0.02
91 3 0.02
92 4 0.02
93 10 0.06
94 38 0.22
95 35 0.21
96 43 0.25
97 2 0.01
98 7 0.04
99 4 0.02
101 2 0.01
102 2 0.01
103 4 0.02
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (93 bp):
CTCAACGTCTCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCTCATCTTATTGGTGAGGTA
CAAGAAGTGGGTCAAAATAGTAGCAGAT
Found at i:9755786 original size:33 final size:33
Alignment explanation
Indices: 9755744--9755811 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
9755734 TAAAGCCACC
* *
9755744 ATCCAATCTTTTACCCCTAGTCAAGAGGGGTAG
1 ATCCAATCTTTTACCCCTAATCAAGAGGGATAG
9755777 ATCCAATCTTTTACCCCTAATCAAGAGGGATAG
1 ATCCAATCTTTTACCCCTAATCAAGAGGGATAG
9755810 AT
1 AT
9755812 TGAAGCCACC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (33 bp):
ATCCAATCTTTTACCCCTAATCAAGAGGGATAG
Found at i:9755832 original size:78 final size:79
Alignment explanation
Indices: 9755702--9756122 Score: 260
Period size: 90 Copynumber: 4.9 Consensus size: 79
9755692 AAAGCCATCT
* *
9755702 AATCTTTTACCCCTAAGTCAAGAGGGGCAGATTAAAGCCACCATCCAATCTTTTACCCCTAGTCA
1 AATCTTTTACCCCTAAGTCAAGAGGGACAGATTAAAGCCACCATCCAATCTTTTACCCCTAATCA
9755767 AGAGGGGTAGATCC
66 AGAGGGGTAGATCC
* * *
9755781 AATCTTTTACCCCTAA-TCAAGAGGGATAGATTGAAGCCACCATCTAATCTTTTACCCCTAATCA
1 AATCTTTTACCCCTAAGTCAAGAGGGACAGATTAAAGCCACCATCCAATCTTTTACCCCTAATCA
*
9755845 AGAGGGCTGATTGAAACCACTATCC
66 AGAGGG--G--T------A-GATCC
* ** * * *
9755870 AATCTTTTACACCT-AGTCAAGAGGGGTAGAATGAAGCCA-CATTCAAATCTTTTACCCCTAATC
1 AATCTTTTACCCCTAAGTCAAGAGGGACAGATTAAAGCCACCA-TCCAATCTTTTACCCCTAATC
*
9755933 AAGAAGGGTAAATTGAAGCCACCGTCC
65 AAG-AGGG------GTAG--A---TCC
* * ** * *
9755960 AATCTTTTACCCCTAA-TCAAGAGGGGCAGATTGAAGCCACCATCTTATATTTTACCCCTAATTA
1 AATCTTTTACCCCTAAGTCAAGAGGGACAGATTAAAGCCACCATCCAATCTTTTACCCCTAATCA
* *
9756024 AGAAGGGAAAATTAAAGCCACTATCT
66 AG-AGGG----GT--AG-----ATCC
* *
9756050 AATCTTTTACTCCC-AA-TCAAGAGGGACAGATTGAAGCCACCATCCAATCTTTTACCCCCAATC
1 AATCTTTTAC-CCCTAAGTCAAGAGGGACAGATTAAAGCCACCATCCAATCTTTTACCCCTAATC
9756113 AAGAGGGGTA
65 AAGAGGGGTA
9756123 AATTGAAGCC
Statistics
Matches: 278, Mismatches: 33, Indels: 58
0.75 0.09 0.16
Matches are distributed among these distances:
78 49 0.18
79 16 0.06
80 1 0.00
82 1 0.00
83 1 0.00
85 1 0.00
86 1 0.00
87 1 0.00
88 6 0.02
89 65 0.23
90 126 0.45
91 6 0.02
93 2 0.01
94 2 0.01
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (79 bp):
AATCTTTTACCCCTAAGTCAAGAGGGACAGATTAAAGCCACCATCCAATCTTTTACCCCTAATCA
AGAGGGGTAGATCC
Found at i:9755845 original size:45 final size:45
Alignment explanation
Indices: 9755777--9757155 Score: 1238
Period size: 45 Copynumber: 30.9 Consensus size: 45
9755767 AGAGGGGTAG
**
9755777 ATCCAATCTTTTACCCCTAATCAAGAGGGATAGATTGAAGCCACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * *
9755822 ATCTAATCTTTTACCCCTAATCAAGA-GGGCTGATTGAAACCACT
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * *
9755866 ATCCAATCTTTTACACCTAGTCAAGAGGGGTAGAATGAAGCCA-C
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * *
9755910 ATTCAAATCTTTTACCCCTAATCAAGAAGGGTAAATTGAAGCCACC
1 A-TCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
*
9755956 GTCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
** * * * * * * *
9756001 ATCTTATATTTTACCCCTAATTAAGAAGGGAAAATTAAAGCCACT
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* *
9756046 ATCTAATCTTTTACTCCC-AATCAAGAGGGACAGATTGAAGCCACC
1 ATCCAATCTTTTAC-CCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * *
9756091 ATCCAATCTTTTACCCCCAATCAAGAGGGGTAAATTGAAGCCACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * *
9756136 GTCCAATCCTTTACCCTTAGTCAAGAGGGGCAGATTGAAGCCA-C
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * *
9756180 ATTCCAATCTTTTACTCCTAATCAAAAGGGACAGATTGAAGCCTCC
1 A-TCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * *
9756226 TTCCAATCTTTTACCTCTGGAA--AAGAGGGACAGATTGAAGCCACC
1 ATCCAATCTTTTACCCCT--AATCAAGAGGGGCAGATTGAAGCCACC
*
9756271 ATCCAATCTTTTACCCCTAAGTTAAGAGGGGCAGATTGAAGCCACC
1 ATCCAATCTTTTACCCCTAA-TCAAGAGGGGCAGATTGAAGCCACC
* * * *
9756317 ATTCAGTCTTTTACCCTTAATCAAGAGGGGCAGATTGAAGCTACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * *
9756362 AAT-CAGTCTTTTACCCCTAATCAAGAGTGGTAGATTAAAGCCACC
1 -ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * * *
9756407 AGT-CAATCTTTTACCCCCAAATCAAGAGGGGTAGAATGAAGTCACT
1 A-TCCAATCTTTTA-CCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * * *
9756453 GTCCAATCTTTTACCCCTAGTCAAGAGGGGTAGATTGAAGCTACT
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * *
9756498 TTCAAATCTTTTACCCCTAGTCAAGAGGGGCAAATTGAAGCCACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * * * * * **
9756543 GTCTAATCTTTTACCCCTAGTCAAAATGGGCAAATTAAAGATACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * *
9756588 ATCCATTCTTTTACCCTTAAATCAAGAGGGGCAGATAGAAGCCACA
1 ATCCAATCTTTTACCCCT-AATCAAGAGGGGCAGATTGAAGCCACC
* *
9756634 ATCCAGTCTTTTACCACTAATCAAGAGGGGCAGATTGAAGCCACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * * *
9756679 AACCAATCTTTTATCCTTAATTAAGAGTGGCAGATTGAAGCCACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* ** ** *
9756724 AGCCAATCTTTTACCCCTAAGTCAAGAGGGATAGATTGAAGTTACT
1 ATCCAATCTTTTACCCCTAA-TCAAGAGGGGCAGATTGAAGCCACC
* * ** *
9756770 GTCCAATCTTTTACCCCTAGTCATTAGGGGCAGATTGAAGCCAAC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * ** *
9756815 TTCCAATCTTTTACCCCTAGTCAAGAGGGGCAGATTGAAGTTACT
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * * * * *
9756860 GTCCAATCTTTTACCCATAGTCAATAGGGG-AAATTGAAGCTATC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * * *
9756904 GTCCAATCTTTTACCCCTACTCCAGAGAGGCATATTGAAGCCACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * *
9756949 TTCCAATCTTTTACTCCTAGTCAAGAGGGGTAGATTGAAG---CC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * * * *
9756991 ATCTAGTCTTTTGCCCCTAATCCAA-A-AGGCAAATT-AA--AACC
1 ATCCAATCTTTTACCCCTAAT-CAAGAGGGGCAGATTGAAGCCACC
* * * * * *
9757032 ATCTAGTCTTTTACCCCTGATCCAGAGGGGTAGATTGAAG---TC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
*** * * * *
9757074 ATCTTGTCTTTTACCCCTAATCTAGTGGGGTAGATTGAAG---TC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
* * * * *
9757116 ATCTAGTTTTTTACCCCTAATCCAGTGGGGCAGATTGAAG
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAG
9757156 TCACACACAC
Statistics
Matches: 1102, Mismatches: 206, Indels: 55
0.81 0.15 0.04
Matches are distributed among these distances:
40 4 0.00
41 28 0.03
42 99 0.09
43 7 0.01
44 77 0.07
45 735 0.67
46 150 0.14
47 2 0.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (45 bp):
ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCACC
Found at i:9756357 original size:136 final size:134
Alignment explanation
Indices: 9755777--9756991 Score: 1131
Period size: 136 Copynumber: 9.0 Consensus size: 134
9755767 AGAGGGGTAG
** * *
9755777 ATCCAATCTTTTACCCCTAATCAAGAGGGATAGATTGAAGCCACCATCTAATCTTTTACCCCTAA
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCTCCATCCAATCTTTTACCCCTAA
* * * * * *
9755842 TCAAGA-GGGCTGATTGAAACCACTATCCAATCTTTTACACCTAGTCAAGAGGGGTAGAATGAAG
66 -CAAGAGGGGCAGATTGAAGCCACCATCCAATCTTTTACCCCTAGTCAAGAGGGGCAGATTGAAG
9755906 CCA-C
130 CCACC
* * * * * *
9755910 ATTCAAATCTTTTACCCCTAATCAAGAAGGGTAAATTGAAGCCACCGTCCAATCTTTTACCCCTA
1 A-TCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCTCCATCCAATCTTTTACCCCTA
** * * * * * * *
9755975 ATCAAGAGGGGCAGATTGAAGCCACCATCTTATATTTTACCCCTAATTAAGAAGGGAAAATTAAA
65 A-CAAGAGGGGCAGATTGAAGCCACCATCCAATCTTTTACCCCTAGTCAAGAGGGGCAGATTGAA
*
9756040 GCCACT
129 GCCACC
* * * *
9756046 ATCTAATCTTTTACTCCC-AATCAAGAGGGACAGATTGAAGCCACCATCCAATCTTTTACCCCCA
1 ATCCAATCTTTTAC-CCCTAATCAAGAGGGGCAGATTGAAGCCTCCATCCAATCTTTTACCCCTA
* * * * *
9756110 ATCAAGAGGGGTAAATTGAAGCCACCGTCCAATCCTTTACCCTTAGTCAAGAGGGGCAGATTGAA
65 A-CAAGAGGGGCAGATTGAAGCCACCATCCAATCTTTTACCCCTAGTCAAGAGGGGCAGATTGAA
9756175 GCCA-C
129 GCCACC
* * * * *
9756180 ATTCCAATCTTTTACTCCTAATCAAAAGGGACAGATTGAAGCCTCCTTCCAATCTTTTACCTCTG
1 A-TCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCTCCATCCAATCTTTTACCCCT-
* *
9756245 GAA-AAGAGGGACAGATTGAAGCCACCATCCAATCTTTTACCCCTAAGTTAAGAGGGGCAGATTG
64 -AACAAGAGGGGCAGATTGAAGCCACCATCCAATCTTTTACCCCT-AGTCAAGAGGGGCAGATTG
9756309 AAGCCACC
127 AAGCCACC
* * * *
9756317 ATTCAGTCTTTTACCCTTAATCAAGAGGGGCAGATTGAAG-CTACCAAT-CAGTCTTTTACCCCT
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCT-CC-ATCCAATCTTTTACCCCT
* * * * * * *
9756380 AATCAAGAGTGGTAGATTAAAGCCACCAGT-CAATCTTTTACCCCCAAATCAAGAGGGGTAGAAT
64 AA-CAAGAGGGGCAGATTGAAGCCACCA-TCCAATCTTTTA-CCCCTAGTCAAGAGGGGCAGATT
* *
9756444 GAAGTCACT
126 GAAGCCACC
* * * ** *
9756453 GTCCAATCTTTTACCCCTAGTCAAGAGGGGTAGATTGAAG-CTACTTTCAAATCTTTTACCCCTA
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCT-CCATCCAATCTTTTACCCCTA
* * * * * * * *
9756517 GTCAAGAGGGGCAAATTGAAGCCACCGTCTAATCTTTTACCCCTAGTCAAAATGGGCAAATTAAA
65 -ACAAGAGGGGCAGATTGAAGCCACCATCCAATCTTTTACCCCTAGTCAAGAGGGGCAGATTGAA
**
9756582 GATACC
129 GCCACC
* * * * * * *
9756588 ATCCATTCTTTTACCCTTAAATCAAGAGGGGCAGATAGAAGCCACAATCCAGTCTTTTACCACTA
1 ATCCAATCTTTTACCCCT-AATCAAGAGGGGCAGATTGAAGCCTCCATCCAATCTTTTACCCCTA
* * * * * *
9756653 ATCAAGAGGGGCAGATTGAAGCCACCAACCAATCTTTTATCCTTAATTAAGAGTGGCAGATTGAA
65 A-CAAGAGGGGCAGATTGAAGCCACCATCCAATCTTTTACCCCTAGTCAAGAGGGGCAGATTGAA
9756718 GCCACC
129 GCCACC
* ** * **
9756724 AGCCAATCTTTTACCCCTAAGTCAAGAGGGATAGATTGAAG-TTACTGTCCAATCTTTTACCCCT
1 ATCCAATCTTTTACCCCTAA-TCAAGAGGGGCAGATTGAAGCCT-CCATCCAATCTTTTACCCCT
* ** * *
9756788 AGTCATTAGGGGCAGATTGAAGCCAACTTCCAATCTTTTACCCCTAGTCAAGAGGGGCAGATTGA
64 A-ACAAGAGGGGCAGATTGAAGCCACCATCCAATCTTTTACCCCTAGTCAAGAGGGGCAGATTGA
** *
9756853 AGTTACT
128 AGCCACC
* * * * * * *
9756860 GTCCAATCTTTTACCCATAGTCAATAGGGG-AAATTGAAG-CTATCGTCCAATCTTTTACCCCTA
1 ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCT-CCATCCAATCTTTTACCCCTA
* * * * * * *
9756923 CTCCAGAGAGGCATATTGAAGCCACCTTCCAATCTTTTACTCCTAGTCAAGAGGGGTAGATTGAA
65 -ACAAGAGGGGCAGATTGAAGCCACCATCCAATCTTTTACCCCTAGTCAAGAGGGGCAGATTGAA
9756988 GCCA
129 GCCA
9756992 TCTAGTCTTT
Statistics
Matches: 877, Mismatches: 180, Indels: 49
0.79 0.16 0.04
Matches are distributed among these distances:
133 1 0.00
134 156 0.18
135 291 0.33
136 418 0.48
137 11 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (134 bp):
ATCCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGCCTCCATCCAATCTTTTACCCCTAA
CAAGAGGGGCAGATTGAAGCCACCATCCAATCTTTTACCCCTAGTCAAGAGGGGCAGATTGAAGC
CACC
Found at i:9764120 original size:28 final size:28
Alignment explanation
Indices: 9764089--9764283 Score: 131
Period size: 28 Copynumber: 7.2 Consensus size: 28
9764079 GCTGGCAAGC
**
9764089 GTAAACGCATAAGAATAAGCTGAAAAGT
1 GTAAACGCATAAGAATAAGCTGACGAGT
*** *
9764117 GTAAA--CAT--GTGCAAGCTGGCGAGT
1 GTAAACGCATAAGAATAAGCTGACGAGT
* * * *
9764141 GTAAACGCATAAGTATAAGTTGGCGAGC
1 GTAAACGCATAAGAATAAGCTGACGAGT
*
9764169 GTAAACGCATAAGAATAAGCTGACGAGC
1 GTAAACGCATAAGAATAAGCTGACGAGT
* * *
9764197 GTAAACG--T--G-TTCAAG-TTAGCGAGC
1 GTAAACGCATAAGAAT-AAGCTGA-CGAGT
* *
9764221 GTAAACGCATAAGTATAAGCTGGCGAGT
1 GTAAACGCATAAGAATAAGCTGACGAGT
* **
9764249 GTAAACGCATAAGAATAAGTTGACGAAC
1 GTAAACGCATAAGAATAAGCTGACGAGT
9764277 GTAAACG
1 GTAAACG
9764284 AATGCAAGCT
Statistics
Matches: 131, Mismatches: 24, Indels: 24
0.73 0.13 0.13
Matches are distributed among these distances:
23 3 0.02
24 31 0.24
26 8 0.06
28 87 0.66
29 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.19
Consensus pattern (28 bp):
GTAAACGCATAAGAATAAGCTGACGAGT
Found at i:9764173 original size:52 final size:53
Alignment explanation
Indices: 9764076--9764312 Score: 150
Period size: 52 Copynumber: 4.5 Consensus size: 53
9764066 TAAACGTGTG
* * ** * *
9764076 CAAGCTGGCAAGCGTAAACGCATAAGAATAAGCTGAAAAGTGTAAACAT-GTG
1 CAAGCTGGCGAGCGTAAACGCATAAGAATAAGTTGACGAGCGTAAACATAGTA
* * * *
9764128 CAAGCTGGCGAGTGTAAACGCATAAGTATAAGTTGGCGAGCGTAAACGCATAAGAA
1 CAAGCTGGCGAGCGTAAACGCATAAGAATAAGTTGACGAGCGTAAA--CAT-AGTA
* * *
9764184 TAAGCTGACGAGCGTAAACG--T--G-TTCAAGTT-AGCGAGCGTAAACGCATAAGTA
1 CAAGCTGGCGAGCGTAAACGCATAAGAAT-AAGTTGA-CGAGCGTAAA--CAT-AGTA
* * * *
9764236 TAAGCTGGCGAGTGTAAACGCATAAGAATAAGTTGACGAACGTAAACGA-A-TG
1 CAAGCTGGCGAGCGTAAACGCATAAGAATAAGTTGACGAGCGTAAAC-ATAGTA
* * *
9764288 CAAGCTAGCAAGCGTAAATGCATAA
1 CAAGCTGGCGAGCGTAAACGCATAA
9764313 CTCTAAGCTG
Statistics
Matches: 146, Mismatches: 26, Indels: 26
0.74 0.13 0.13
Matches are distributed among these distances:
51 1 0.01
52 102 0.70
53 1 0.01
54 6 0.04
55 1 0.01
56 33 0.23
57 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.26, T:0.19
Consensus pattern (53 bp):
CAAGCTGGCGAGCGTAAACGCATAAGAATAAGTTGACGAGCGTAAACATAGTA
Found at i:9764219 original size:80 final size:80
Alignment explanation
Indices: 9764077--9764363 Score: 340
Period size: 80 Copynumber: 3.6 Consensus size: 80
9764067 AAACGTGTGC
* ** * * * *
9764077 AAGCTGGCAAGCGTAAACGCATAAGAATAAGCTGAAAAGTGTAAACATGTGCAAGCTGGCGAGTG
1 AAGCTGGCGAGCGTAAACGCATAAGAATAAGCTGACGAGCGTAAACGTGTGCAAGCTAGCGAGCG
9764142 TAAACGCATAAGTAT
66 TAAACGCATAAGTAT
* * *
9764157 AAGTTGGCGAGCGTAAACGCATAAGAATAAGCTGACGAGCGTAAACGTGTTCAAGTTAGCGAGCG
1 AAGCTGGCGAGCGTAAACGCATAAGAATAAGCTGACGAGCGTAAACGTGTGCAAGCTAGCGAGCG
9764222 TAAACGCATAAGTAT
66 TAAACGCATAAGTAT
* * * ** *
9764237 AAGCTGGCGAGTGTAAACGCATAAGAATAAGTTGACGAACGTAAACGAATGCAAGCTAGCAAGCG
1 AAGCTGGCGAGCGTAAACGCATAAGAATAAGCTGACGAGCGTAAACGTGTGCAAGCTAGCGAGCG
* * *
9764302 TAAATGCATAACTCT
66 TAAACGCATAAGTAT
* * * * * **
9764317 AAGCTGGTGAACGTGAACGCATAAGTATAAGTTGGTGAGCGTAAACG
1 AAGCTGGCGAGCGTAAACGCATAAGAATAAGCTGACGAGCGTAAACG
9764364 CGTATTAATT
Statistics
Matches: 177, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 177 1.00
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.20
Consensus pattern (80 bp):
AAGCTGGCGAGCGTAAACGCATAAGAATAAGCTGACGAGCGTAAACGTGTGCAAGCTAGCGAGCG
TAAACGCATAAGTAT
Found at i:9764338 original size:28 final size:28
Alignment explanation
Indices: 9764300--9764364 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
9764290 AGCTAGCAAG
* *
9764300 CGTAAATGCATAACTCTAAGCTGGTGAA
1 CGTAAACGCATAACTATAAGCTGGTGAA
* * * *
9764328 CGTGAACGCATAAGTATAAGTTGGTGAG
1 CGTAAACGCATAACTATAAGCTGGTGAA
9764356 CGTAAACGC
1 CGTAAACGC
9764365 GTATTAATTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (28 bp):
CGTAAACGCATAACTATAAGCTGGTGAA
Found at i:9766768 original size:16 final size:15
Alignment explanation
Indices: 9766744--9766787 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
9766734 TATAATAAAA
9766744 TTTTTTCTTTTTCTT
1 TTTTTTCTTTTTCTT
*
9766759 TTTTTCTCTTTTTCTC
1 TTTTT-TCTTTTTCTT
**
9766775 AATTTTCTTTTTC
1 TTTTTTCTTTTTC
9766788 AAGTGACTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTTCTTTTTCTT
Found at i:9789995 original size:3 final size:3
Alignment explanation
Indices: 9789987--9790025 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
9789977 GTATTGAGGC
*
9789987 AGA AGA AGA AGAA AGA A-A AGA AGA AGA AAA AGA AGA AGA
1 AGA AGA AGA AG-A AGA AGA AGA AGA AGA AGA AGA AGA AGA
9790026 CGTTGCCCCG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:9790009 original size:15 final size:15
Alignment explanation
Indices: 9789987--9790025 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
9789977 GTATTGAGGC
9789987 AGAAGAAGAAGAAAGA
1 AGAAGAAGAAGAAA-A
9790003 A-AAGAAGAAGAAAA
1 AGAAGAAGAAGAAAA
9790017 AGAAGAAGA
1 AGAAGAAGA
9790026 CGTTGCCCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 2 0.09
15 19 0.86
16 1 0.05
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (15 bp):
AGAAGAAGAAGAAAA
Found at i:9790443 original size:17 final size:17
Alignment explanation
Indices: 9790418--9790471 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
9790408 CATGCATTTC
9790418 TTTTAATTGTCAT-TGCA
1 TTTTAATTGTC-TCTGCA
*
9790435 TTTTTATTGTCTCTGCA
1 TTTTAATTGTCTCTGCA
*
9790452 TTTTATTTGT-TCTAGCA
1 TTTTAATTGTCTCT-GCA
9790469 TTT
1 TTT
9790472 GCATTGTAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 4 0.12
17 28 0.88
ACGTcount: A:0.17, C:0.13, G:0.11, T:0.59
Consensus pattern (17 bp):
TTTTAATTGTCTCTGCA
Found at i:9795897 original size:52 final size:52
Alignment explanation
Indices: 9795811--9795912 Score: 132
Period size: 52 Copynumber: 2.0 Consensus size: 52
9795801 GTTTATTAGG
* * * *
9795811 TAAACATGTGCAAGCTGGTGAGCGTAGACGCATAAGAATAAGCTGACGAGCA
1 TAAACATGTGCAACCTGGCGAGCGTAAACACATAAGAATAAGCTGACGAGCA
* * * *
9795863 TAAACGTGTGCAACCTGGCGAGTGTAAACACATAAGTATAAGCTGGCGAG
1 TAAACATGTGCAACCTGGCGAGCGTAAACACATAAGAATAAGCTGACGAG
9795913 TGTAAACACA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (52 bp):
TAAACATGTGCAACCTGGCGAGCGTAAACACATAAGAATAAGCTGACGAGCA
Found at i:9795917 original size:28 final size:28
Alignment explanation
Indices: 9795877--9796215 Score: 227
Period size: 28 Copynumber: 12.5 Consensus size: 28
9795867 CGTGTGCAAC
*
9795877 CTGGCGAGTGTAAACACATAAGTATAAG
1 CTGGCGAGCGTAAACACATAAGTATAAG
*
9795905 CTGGCGAGTGTAAACACATAA-TAATAAG
1 CTGGCGAGCGTAAACACATAAGT-ATAAG
* * * * **
9795933 TTGACGAGCAT-AA-ACGT--GTGCAAG
1 CTGGCGAGCGTAAACACATAAGTATAAG
* * *
9795957 CTGGAGAGCGTAAATATATAAGTATAAG
1 CTGGCGAGCGTAAACACATAAGTATAAG
* * * * *
9795985 CTAGTGAGCGTAAAAACACAAGAATAAG
1 CTGGCGAGCGTAAACACATAAGTATAAG
** * **
9796013 CTAACGAGCGT-AA-ACGT--GTGCAAG
1 CTGGCGAGCGTAAACACATAAGTATAAG
* *
9796037 CTGGCGAGCGTAAACTCATAAGTATTAG
1 CTGGCGAGCGTAAACACATAAGTATAAG
* * ** * *
9796065 CTGGCAAGAGTAAATGCATATGAATAAG
1 CTGGCGAGCGTAAACACATAAGTATAAG
* **
9796093 CTGACGAGCGT-AA-ACAT--GTGCAAG
1 CTGGCGAGCGTAAACACATAAGTATAAG
* *
9796117 CTGGTGAGCGTAAACGCATAAGTATAAG
1 CTGGCGAGCGTAAACACATAAGTATAAG
*
9796145 CTGGTGAGCGTAAACACATAAGTATAAG
1 CTGGCGAGCGTAAACACATAAGTATAAG
* *
9796173 CTGGCGAACGTAAACGCATAAGTATAAG
1 CTGGCGAGCGTAAACACATAAGTATAAG
* *
9796201 CTAGCGAGCATAAAC
1 CTGGCGAGCGTAAAC
9796216 GCGTATTAAT
Statistics
Matches: 236, Mismatches: 61, Indels: 28
0.73 0.19 0.09
Matches are distributed among these distances:
24 36 0.15
25 7 0.03
26 15 0.06
27 7 0.03
28 171 0.72
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.20
Consensus pattern (28 bp):
CTGGCGAGCGTAAACACATAAGTATAAG
Found at i:9796185 original size:80 final size:80
Alignment explanation
Indices: 9795822--9796188 Score: 455
Period size: 80 Copynumber: 4.6 Consensus size: 80
9795812 AAACATGTGC
* * * * *
9795822 AAGCTGGTGAGCGTAGACGCATAAGAATAAGCTGACGAGCATAAACGTGTGCAACCTGGCGAGTG
1 AAGCTGGTGAGCGTAAACACATAAGAATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGCGAGCG
9795887 TAAACACATAAGTAT
66 TAAACACATAAGTAT
* * * * * *
9795902 AAGCTGGCGAGTGTAAACACATAATAATAAGTTGACGAGCATAAACGTGTGCAAGCTGGAGAGCG
1 AAGCTGGTGAGCGTAAACACATAAGAATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGCGAGCG
* *
9795967 TAAATATATAAGTAT
66 TAAACACATAAGTAT
* * * *
9795982 AAGCTAGTGAGCGTAAAAACACAAGAATAAGCTAACGAGCGTAAACGTGTGCAAGCTGGCGAGCG
1 AAGCTGGTGAGCGTAAACACATAAGAATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGCGAGCG
*
9796047 TAAACTCATAAGTAT
66 TAAACACATAAGTAT
* ** * ** * * *
9796062 TAGCTGGCAAGAGTAAATGCATATGAATAAGCTGACGAGCGTAAACATGTGCAAGCTGGTGAGCG
1 AAGCTGGTGAGCGTAAACACATAAGAATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGCGAGCG
*
9796127 TAAACGCATAAGTAT
66 TAAACACATAAGTAT
* * *
9796142 AAGCTGGTGAGCGTAAACACATAAGTATAAGCTGGCGAACGTAAACG
1 AAGCTGGTGAGCGTAAACACATAAGAATAAGCTGACGAGCGTAAACG
9796189 CATAAGTATA
Statistics
Matches: 239, Mismatches: 48, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 239 1.00
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (80 bp):
AAGCTGGTGAGCGTAAACACATAAGAATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGCGAGCG
TAAACACATAAGTAT
Found at i:9798147 original size:11 final size:11
Alignment explanation
Indices: 9798128--9798160 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
9798118 TTAGGATATT
9798128 ATTTATATTTA
1 ATTTATATTTA
*
9798139 ATTTGTATTTA
1 ATTTATATTTA
9798150 ATTTATATTTA
1 ATTTATATTTA
9798161 TCTTTTTAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (11 bp):
ATTTATATTTA
Found at i:9798188 original size:14 final size:14
Alignment explanation
Indices: 9798151--9798180 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9798141 TTGTATTTAA
*
9798151 TTTATATTTATCTT
1 TTTAGATTTATCTT
9798165 TTTAGATTTATCTT
1 TTTAGATTTATCTT
9798179 TT
1 TT
9798181 AGAATTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (14 bp):
TTTAGATTTATCTT
Found at i:9799361 original size:21 final size:21
Alignment explanation
Indices: 9799335--9799386 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
9799325 GTTGTGCACA
9799335 ATATTCACCAAATGGTTCAAC
1 ATATTCACCAAATGGTTCAAC
9799356 ATATTCACCAAATGGTTCAAC
1 ATATTCACCAAATGGTTCAAC
9799377 ATATTCACCA
1 ATATTCACCA
9799387 CCACGGTCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (21 bp):
ATATTCACCAAATGGTTCAAC
Found at i:9810406 original size:17 final size:17
Alignment explanation
Indices: 9810383--9810422 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
9810373 TCTTAATTAA
*
9810383 AAAAATAAA-ATTTAAT
1 AAAAATAAATATTAAAT
9810399 ATAAAATAAATATTAAAT
1 A-AAAATAAATATTAAAT
9810417 AAAAAT
1 AAAAAT
9810423 TCAATTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 13 0.62
18 7 0.33
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAAATAAATATTAAAT
Found at i:9817270 original size:15 final size:15
Alignment explanation
Indices: 9817236--9817270 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
9817226 ATATTTCTTA
*
9817236 TTTTTTTCTTTTCTT
1 TTTTTTTCTTTTATT
*
9817251 CTTTTTTCTTTTATT
1 TTTTTTTCTTTTATT
9817266 TTTTT
1 TTTTT
9817271 ATAAATGTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTTTTCTTTTATT
Found at i:9828439 original size:15 final size:13
Alignment explanation
Indices: 9828395--9828440 Score: 58
Period size: 12 Copynumber: 3.5 Consensus size: 13
9828385 TAGCAAACAT
*
9828395 TTTTTTTCTTTTC
1 TTTTTCTCTTTTC
9828408 -TTTTCTCTTTTC
1 TTTTTCTCTTTTC
9828420 TTTTTCTCATTTTCC
1 TTTTTCTC-TTTT-C
9828435 TTTTTC
1 TTTTTC
9828441 AAGTGATTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 11 0.38
13 7 0.24
14 4 0.14
15 7 0.24
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTCTCTTTTC
Found at i:9835723 original size:17 final size:17
Alignment explanation
Indices: 9835701--9835751 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
9835691 TTGTTAGTAA
9835701 CCATTGTCATTGCATTT
1 CCATTGTCATTGCATTT
*
9835718 CCATTGTCATTACATTT
1 CCATTGTCATTGCATTT
* *
9835735 CCACTGTCATCGCATTT
1 CCATTGTCATTGCATTT
9835752 TAGTGTTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.20, C:0.27, G:0.10, T:0.43
Consensus pattern (17 bp):
CCATTGTCATTGCATTT
Found at i:9846052 original size:2 final size:2
Alignment explanation
Indices: 9846040--9846076 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
9846030 GAACATGTGC
*
9846040 TA TA TA GA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9846077 TTGAATATGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:9848083 original size:19 final size:19
Alignment explanation
Indices: 9848061--9848105 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
9848051 TTATATTAGG
9848061 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
9848080 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
9848099 ATTTAAT
1 ATTTAAT
9848106 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:9848935 original size:22 final size:22
Alignment explanation
Indices: 9848908--9848967 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
9848898 TTCGACTTCC
9848908 CTATTTTCTATTT-TTTTCAATT
1 CTATTTTCT-TTTATTTTCAATT
* *
9848930 CTATTTTGTTTTATTTTTAATT
1 CTATTTTCTTTTATTTTCAATT
*
9848952 CT-GTTTCTTTTATTTT
1 CTATTTTCTTTTATTTT
9848968 TCCTCAGATC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 15 0.45
22 18 0.55
ACGTcount: A:0.15, C:0.10, G:0.03, T:0.72
Consensus pattern (22 bp):
CTATTTTCTTTTATTTTCAATT
Found at i:9848964 original size:21 final size:22
Alignment explanation
Indices: 9848912--9848968 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
9848902 ACTTCCCTAT
* *
9848912 TTTCTATTT-TTTTCAATTCTAT
1 TTTCT-TTTATTTTTAATTCTAG
*
9848934 TTTGTTTTATTTTTAATTCT-G
1 TTTCTTTTATTTTTAATTCTAG
9848955 TTTCTTTTATTTTT
1 TTTCTTTTATTTTT
9848969 CCTCAGATCG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 16 0.53
22 14 0.47
ACGTcount: A:0.14, C:0.09, G:0.04, T:0.74
Consensus pattern (22 bp):
TTTCTTTTATTTTTAATTCTAG
Found at i:9849560 original size:21 final size:22
Alignment explanation
Indices: 9849526--9849568 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
9849516 TATTTCTTTC
9849526 AATTCTGTTTTCTTTTATTTTT
1 AATTCTGTTTTCTTTTATTTTT
9849548 AATTCTG-TTTCTTTTATTTTT
1 AATTCTGTTTTCTTTTATTTTT
9849569 CCTCAAATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.72
Consensus pattern (22 bp):
AATTCTGTTTTCTTTTATTTTT
Found at i:9850901 original size:20 final size:20
Alignment explanation
Indices: 9850878--9850918 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
9850868 GAATTTCACC
* *
9850878 AGCAATCTATAGATTTTCAA
1 AGCAAACTACAGATTTTCAA
*
9850898 AGCAAACTACGGATTTTCAA
1 AGCAAACTACAGATTTTCAA
9850918 A
1 A
9850919 AGAAAACTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.29
Consensus pattern (20 bp):
AGCAAACTACAGATTTTCAA
Found at i:9850925 original size:21 final size:20
Alignment explanation
Indices: 9850889--9850927 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
9850879 GCAATCTATA
*
9850889 GATTTTCAAAGCAAACTACG
1 GATTTTCAAAGAAAACTACG
9850909 GATTTTCAAAAGAAAACTA
1 GATTTTC-AAAGAAAACTA
9850928 AGACATCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (20 bp):
GATTTTCAAAGAAAACTACG
Found at i:9854972 original size:13 final size:13
Alignment explanation
Indices: 9854950--9854987 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
9854940 TATTTTTATT
9854950 TTATTTATTTTTC
1 TTATTTATTTTTC
*
9854963 -TATCTTATTTTAC
1 TTAT-TTATTTTTC
9854976 TTATTTATTTTT
1 TTATTTATTTTT
9854988 GTCCAGGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 3 0.14
13 15 0.71
14 3 0.14
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (13 bp):
TTATTTATTTTTC
Found at i:9856533 original size:19 final size:19
Alignment explanation
Indices: 9856511--9856555 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
9856501 TTATATTAGG
9856511 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
9856530 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
9856549 ATTTAAT
1 ATTTAAT
9856556 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:9857384 original size:22 final size:22
Alignment explanation
Indices: 9857357--9857416 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
9857347 TTCGACTTCC
9857357 CTATTTTCTATTT-TTTTCAATT
1 CTATTTTCT-TTTATTTTCAATT
* *
9857379 CTATTTTGTTTTATTTTTAATT
1 CTATTTTCTTTTATTTTCAATT
*
9857401 CT-GTTTCTTTTATTTT
1 CTATTTTCTTTTATTTT
9857417 TCCTCAGATC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 15 0.45
22 18 0.55
ACGTcount: A:0.15, C:0.10, G:0.03, T:0.72
Consensus pattern (22 bp):
CTATTTTCTTTTATTTTCAATT
Found at i:9857413 original size:21 final size:22
Alignment explanation
Indices: 9857361--9857417 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
9857351 ACTTCCCTAT
* *
9857361 TTTCTATTT-TTTTCAATTCTAT
1 TTTCT-TTTATTTTTAATTCTAG
*
9857383 TTTGTTTTATTTTTAATTCT-G
1 TTTCTTTTATTTTTAATTCTAG
9857404 TTTCTTTTATTTTT
1 TTTCTTTTATTTTT
9857418 CCTCAGATCG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 16 0.53
22 14 0.47
ACGTcount: A:0.14, C:0.09, G:0.04, T:0.74
Consensus pattern (22 bp):
TTTCTTTTATTTTTAATTCTAG
Found at i:9858153 original size:23 final size:23
Alignment explanation
Indices: 9858134--9858407 Score: 392
Period size: 23 Copynumber: 12.0 Consensus size: 23
9858124 TCCATTTACA
*
9858134 CATAAATCATATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
*
9858157 CATAAATTACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
9858180 CATAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* *
9858203 CATAAATCATATTAACATTTAAG
1 CATAAATCACATTAATATTTAAG
9858226 -AGTAAA-CACATTAATATTTAAG
1 CA-TAAATCACATTAATATTTAAG
* *
9858248 CACAACTCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
9858271 CATAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
*
9858294 CACAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* * *
9858317 CACAAATCAAATTAATATTTAAT
1 CATAAATCACATTAATATTTAAG
9858340 CATAAATCACATTAACT-TTTAAG
1 CATAAATCACATTAA-TATTTAAG
* * *
9858363 CATAAATCATATTAACATTTAAA
1 CATAAATCACATTAATATTTAAG
9858386 CATAAATCACATTAATATTTAA
1 CATAAATCACATTAATATTTAA
9858408 CACATTTAAT
Statistics
Matches: 224, Mismatches: 22, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
22 17 0.08
23 206 0.92
24 1 0.00
ACGTcount: A:0.48, C:0.14, G:0.04, T:0.35
Consensus pattern (23 bp):
CATAAATCACATTAATATTTAAG
Found at i:9866947 original size:16 final size:17
Alignment explanation
Indices: 9866897--9866935 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
9866887 AGTATAAACT
9866897 ATTAAAATTTAAAATAA
1 ATTAAAATTTAAAATAA
*
9866914 ATTAAAATTT-TAATAA
1 ATTAAAATTTAAAATAA
9866930 ATTAAA
1 ATTAAA
9866936 TAAATTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
ATTAAAATTTAAAATAA
Found at i:9867656 original size:15 final size:14
Alignment explanation
Indices: 9867636--9867668 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
9867626 TTTTGAAAAC
9867636 TAAAAATAAATAACA
1 TAAAAATAAATAA-A
9867651 TAAAAATAAATAAA
1 TAAAAATAAATAAA
9867665 TAAA
1 TAAA
9867669 TGAAAACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAAAATAAATAAA
Found at i:9871989 original size:38 final size:38
Alignment explanation
Indices: 9871947--9872026 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 38
9871937 GAGTCTATTT
* *
9871947 AGAATTGCGCCCACAATTGTCACTGCATGACGATGTCC
1 AGAATTGCGCCCAAAATTGTCACTACATGACGATGTCC
9871985 AGAATTGCGCCCAAAATTGTCACTACATGACGATGTCC
1 AGAATTGCGCCCAAAATTGTCACTACATGACGATGTCC
9872023 AGAA
1 AGAA
9872027 ATGTCGCTGC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (38 bp):
AGAATTGCGCCCAAAATTGTCACTACATGACGATGTCC
Found at i:9874233 original size:17 final size:17
Alignment explanation
Indices: 9874211--9874244 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9874201 CGTTAGTAAG
*
9874211 CATTGTCGTTGCATTTT
1 CATTGTCATTGCATTTT
9874228 CATTGTCATTGCATTTT
1 CATTGTCATTGCATTTT
9874245 AGTATTAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.18, G:0.15, T:0.53
Consensus pattern (17 bp):
CATTGTCATTGCATTTT
Found at i:9878072 original size:16 final size:17
Alignment explanation
Indices: 9878036--9878070 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
9878026 TATCAAAATG
9878036 AATGCAGTGACAATAAA
1 AATGCAGTGACAATAAA
9878053 AATGCAG-GCACAATAAA
1 AATGCAGTG-ACAATAAA
9878070 A
1 A
9878071 TGTAAGAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 1 0.06
17 16 0.94
ACGTcount: A:0.54, C:0.14, G:0.17, T:0.14
Consensus pattern (17 bp):
AATGCAGTGACAATAAA
Found at i:9879130 original size:13 final size:14
Alignment explanation
Indices: 9879101--9879128 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9879091 TGTCGGCCTT
9879101 CTTTTTACCTTTCC
1 CTTTTTACCTTTCC
9879115 CTTTTTACCTTTCC
1 CTTTTTACCTTTCC
9879129 TTGGAGGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.36, G:0.00, T:0.57
Consensus pattern (14 bp):
CTTTTTACCTTTCC
Found at i:9891545 original size:21 final size:21
Alignment explanation
Indices: 9891519--9891572 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
9891509 GGAGTTTTTA
*
9891519 GTATCGGTAGATG-CATGACTT
1 GTATCGGTAGAAGTCAT-ACTT
* *
9891540 GTATCGGTAAAAGTTATACTT
1 GTATCGGTAGAAGTCATACTT
9891561 GTATCGGTAGAA
1 GTATCGGTAGAA
9891573 CTAGCACAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (21 bp):
GTATCGGTAGAAGTCATACTT
Found at i:9899259 original size:17 final size:19
Alignment explanation
Indices: 9899223--9899259 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
9899213 TTAATCTTTA
9899223 CTAATCTGTTGTTATTTTT
1 CTAATCTGTTGTTATTTTT
*
9899242 CTAAT-TGTT-TTCTTTTT
1 CTAATCTGTTGTTATTTTT
9899259 C
1 C
9899260 AGATTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 4 0.24
19 5 0.29
ACGTcount: A:0.14, C:0.14, G:0.08, T:0.65
Consensus pattern (19 bp):
CTAATCTGTTGTTATTTTT
Found at i:9926550 original size:23 final size:24
Alignment explanation
Indices: 9926519--9926564 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
9926509 TTGATCAAAC
9926519 CAAACCCGAACCATTGACTTTGAT
1 CAAACCCGAACCATTGACTTTGAT
**
9926543 CAAA-CCGAACTGTTGACTTTGA
1 CAAACCCGAACCATTGACTTTGA
9926565 CTAAATTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (24 bp):
CAAACCCGAACCATTGACTTTGAT
Found at i:9926617 original size:14 final size:15
Alignment explanation
Indices: 9926598--9926683 Score: 65
Period size: 14 Copynumber: 6.1 Consensus size: 15
9926588 CCAAACCGGG
*
9926598 CCGTTGACTA-TTGA
1 CCGTTGACGAGTTGA
9926612 CCGTTGA-GAGTTGA
1 CCGTTGACGAGTTGA
* * * *
9926626 CAGTTGGCCA-TTAA
1 CCGTTGACGAGTTGA
9926640 CCGTTGAC-AGTTGA
1 CCGTTGACGAGTTGA
*
9926654 CTGTTGACGA-TTGA
1 CCGTTGACGAGTTGA
* *
9926668 CGGTTGACTAGTTGA
1 CCGTTGACGAGTTGA
9926683 C
1 C
9926684 TTTTTTGGGA
Statistics
Matches: 56, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
13 2 0.04
14 47 0.84
15 7 0.12
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (15 bp):
CCGTTGACGAGTTGA
Found at i:9926667 original size:21 final size:22
Alignment explanation
Indices: 9926643--9926683 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
9926633 CCATTAACCG
9926643 TTGACAGTTGACT-GTTGACGA
1 TTGACAGTTGACTAGTTGACGA
*
9926664 TTGACGGTTGACTAGTTGAC
1 TTGACAGTTGACTAGTTGAC
9926684 TTTTTTGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (22 bp):
TTGACAGTTGACTAGTTGACGA
Found at i:9927700 original size:13 final size:13
Alignment explanation
Indices: 9927684--9927708 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9927674 TATTTATAGT
9927684 ATTATTTTATTTC
1 ATTATTTTATTTC
9927697 ATTATTTTATTT
1 ATTATTTTATTT
9927709 TATTTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTATTTTATTTC
Found at i:9931143 original size:13 final size:13
Alignment explanation
Indices: 9931125--9931229 Score: 81
Period size: 13 Copynumber: 8.0 Consensus size: 13
9931115 TATATATCCT
*
9931125 TATAAACATTTCG
1 TATAAACATTTCA
9931138 TATAAACATTTCA
1 TATAAACATTTCA
9931151 TA-AAACCATTTCA
1 TATAAA-CATTTCA
*
9931164 TAT-ATCTATTTCAA
1 TATAAAC-ATTTC-A
* * *
9931178 AATAAGCATTTCG
1 TATAAACATTTCA
*
9931191 TATAACCATTTCA
1 TATAAACATTTCA
9931204 TAT-AACAATTTCA
1 TATAAAC-ATTTCA
* *
9931217 TCTAAATATTTCA
1 TATAAACATTTCA
9931230 CCTTATCATT
Statistics
Matches: 74, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
12 6 0.08
13 56 0.76
14 10 0.14
15 2 0.03
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.39
Consensus pattern (13 bp):
TATAAACATTTCA
Found at i:9931188 original size:40 final size:40
Alignment explanation
Indices: 9931139--9931216 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
9931129 AACATTTCGT
* *
9931139 ATAAACATTTCATAAAACCATTTCATATATCTATTTCAAA
1 ATAAACATTTCATAAAACCATTTCATATAACAATTTCAAA
* * *
9931179 ATAAGCATTTCGTATAACCATTTCATATAACAATTTCA
1 ATAAACATTTCATAAAACCATTTCATATAACAATTTCA
9931217 TCTAAATATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.37
Consensus pattern (40 bp):
ATAAACATTTCATAAAACCATTTCATATAACAATTTCAAA
Found at i:9931227 original size:53 final size:53
Alignment explanation
Indices: 9931126--9931229 Score: 145
Period size: 53 Copynumber: 2.0 Consensus size: 53
9931116 ATATATCCTT
* **
9931126 ATAAACATTTCGTATAAACATTTCATAAAACCATTTCATATATCTATTTCAAA
1 ATAAACATTTCGTATAAACATTTCATAAAACAATTTCATATAAATATTTCAAA
* * * *
9931179 ATAAGCATTTCGTATAACCATTTCATATAACAATTTCATCTAAATATTTCA
1 ATAAACATTTCGTATAAACATTTCATAAAACAATTTCATATAAATATTTCA
9931230 CCTTATCATT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.38
Consensus pattern (53 bp):
ATAAACATTTCGTATAAACATTTCATAAAACAATTTCATATAAATATTTCAAA
Found at i:9935132 original size:29 final size:28
Alignment explanation
Indices: 9935076--9935132 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
9935066 GAATGAGGTG
*
9935076 CAAGTACATGAATAATAAATACACAAAA
1 CAAGTACATGAATAATAAATAAACAAAA
*
9935104 CAAGTATATGAA-AATGAAAATAAACAAAA
1 CAAGTACATGAATAAT--AAATAAACAAAA
9935133 TACGTAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 3 0.12
28 11 0.44
29 11 0.44
ACGTcount: A:0.63, C:0.11, G:0.09, T:0.18
Consensus pattern (28 bp):
CAAGTACATGAATAATAAATAAACAAAA
Found at i:9935142 original size:28 final size:29
Alignment explanation
Indices: 9935092--9935152 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
9935082 CATGAATAAT
*
9935092 AAATACACAAAACAAGTATATGA-AAATGA
1 AAATAAACAAAACAAGTATATGAGAAA-GA
* *
9935121 AAATAAACAAAATACGTA-ATGAGAAAGA
1 AAATAAACAAAACAAGTATATGAGAAAGA
9935149 AAAT
1 AAAT
9935153 GTAAGTCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 10 0.36
29 18 0.64
ACGTcount: A:0.64, C:0.08, G:0.11, T:0.16
Consensus pattern (29 bp):
AAATAAACAAAACAAGTATATGAGAAAGA
Found at i:9935501 original size:30 final size:30
Alignment explanation
Indices: 9935429--9935499 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
9935419 TTTTGGGTCG
* *
9935429 AAATGTAATTCTGAAAAAGTTTAGAGGTTA
1 AAATATAATTTTGAAAAAGTTTAGAGGTTA
* * *
9935459 AAATGTAATTTTGAAAAAG-TTCGGGGTTA
1 AAATATAATTTTGAAAAAGTTTAGAGGTTA
*
9935488 AAATATGATTTT
1 AAATATAATTTT
9935500 TGGAAAGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 18 0.50
30 18 0.50
ACGTcount: A:0.41, C:0.03, G:0.20, T:0.37
Consensus pattern (30 bp):
AAATATAATTTTGAAAAAGTTTAGAGGTTA
Found at i:9937375 original size:85 final size:85
Alignment explanation
Indices: 9937230--9937386 Score: 217
Period size: 85 Copynumber: 1.8 Consensus size: 85
9937220 TGCTTCATTT
** * * * * * *
9937230 GATTTGGTTTACTTCTTTGTATCTTATTAGGAACATGATCGCTTTATTATTGTGATCCACTTCTT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAACATGATCGCTTTATTATTGCGACCCACTTCTC
9937295 TGTATCTTATCAGAAATATG
66 TGTATCTTATCAGAAATATG
*
9937315 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTACTT-CGACCCACTTCT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAACATGATCGCTTTATTA-TTGCGACCCACTTCT
9937379 CTGTATCT
65 CTGTATCT
9937387 CATTAGGAAG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
85 60 0.97
86 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGGAACATGATCGCTTTATTATTGCGACCCACTTCTC
TGTATCTTATCAGAAATATG
Found at i:9937491 original size:210 final size:210
Alignment explanation
Indices: 9937108--9937511 Score: 610
Period size: 210 Copynumber: 1.9 Consensus size: 210
9937098 GCTTCATCTC
* *
9937108 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATAATCACTTTATTACTTCGACCCACTTCTTTGT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATAATCACTTTATTACTTCGACCCACTTCTCTGT
*
9937173 ATCTCATCAGGAAAATAGGGGTTTGAAGCTTCACTCGCACTGAAATTTGCTTCATTTGATTTGGT
66 ATCTCATCAGGAAAATAGAGGTTTGAAGCTTCACTCGCACTGAAATTTGCTTCATTTGATTTGGT
* * ** * * * * *
9937238 TTACTTCTTTGTATCTTATTAGGAACATGATCGCTTTATTATTGTGATCCACTTCTTTGTATCTT
131 CTACTTCTCTGTATCCCATCAAGAACATGACCGCTTCATTATTGTGATCCACTTCTCTGTATCTT
9937303 ATCAGAAATATGGAT
196 ATCAGAAATATGGAT
* *
9937318 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTACTTCGACCCACTTCTCTGT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATAATCACTTTATTACTTCGACCCACTTCTCTGT
* * * * * * *
9937383 ATCTCATTAGGAAGATAGAGGTTTGAAGTTTCACTCGCATTGGACTTTGCTTCATTTTATTTGGT
66 ATCTCATCAGGAAAATAGAGGTTTGAAGCTTCACTCGCACTGAAATTTGCTTCATTTGATTTGGT
*
9937448 CTACTTCTCTGTATCCCATCAAGAAGATGACCGCTTCATTATTGTGATCCACTTCTCTGTATCT
131 CTACTTCTCTGTATCCCATCAAGAACATGACCGCTTCATTATTGTGATCCACTTCTCTGTATCT
9937512 CATTGATCGC
Statistics
Matches: 172, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
210 172 1.00
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (210 bp):
TTGGTCCACTTCTCTGTATCTCATCAGGAAGATAATCACTTTATTACTTCGACCCACTTCTCTGT
ATCTCATCAGGAAAATAGAGGTTTGAAGCTTCACTCGCACTGAAATTTGCTTCATTTGATTTGGT
CTACTTCTCTGTATCCCATCAAGAACATGACCGCTTCATTATTGTGATCCACTTCTCTGTATCTT
ATCAGAAATATGGAT
Found at i:9939458 original size:85 final size:84
Alignment explanation
Indices: 9939313--9939824 Score: 308
Period size: 85 Copynumber: 6.0 Consensus size: 84
9939303 TGCTTCATTT
* * * * * * * * *
9939313 GATTTGGTCTACTTCTCTATATCTCATCAGGAAGACGATCACTTCATTATTGCGATCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATGATT-TGACCCACTTCTC
* * *
9939378 TATATCCCATCAAGAAGATG
65 TGTATCTCATCAGGAAGATG
* *
9939398 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTGCTTTGACCCACTTCTT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTA-TGATTTGACCCACTTCTC
*
9939463 TGTATCTCATTAGGAAGATG
65 TGTATCTCATCAGGAAGATG
** * * * *
9939483 ACCGCTTTACTACGTTGACCCACTTCTCTGAATCCCATTAGGAAGATG---GATTT-TGAAGTTT
1 ---G----A-T---TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATG-A-TTT
* * * * * **** *
9939544 CACTCAC--AT-TG-AGCT--T-TGCTTCATT
53 GACCCACTTCTCTGTATCTCATCAGGAAGATG
* * * * * * *
9939569 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGATCGCTTCATTATTGTGATCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATGATT-TGACCCACTTCTC
**
9939634 TGTATCTCATTTGGAAGATG
65 TGTATCTCATCAGGAAGATG
* * * *
9939654 GATTTGGTCCACTTCTCTGTATCTTATTAGGAAGATGACCGCTTTATTGATTTAATCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTA-TGATTTGACCCACTTCTC
* * *
9939719 TGTATCTCATCAAGAAGGTA
65 TGTATCTCATCAGGAAGATG
* * * * *
9939739 AATTTGGTCCACTTCTCTGTATCTTATCAGGAAGATGACCGCTTTATTACTTTGGCCTACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATGA-TTTGACCCACTTCTC
*
9939804 TGTTTCTCATCAGGAAGATG
65 TGTATCTCATCAGGAAGATG
9939824 G
1 G
9939825 GGGTTTGAAG
Statistics
Matches: 320, Mismatches: 79, Indels: 56
0.70 0.17 0.12
Matches are distributed among these distances:
75 26 0.08
77 2 0.01
78 10 0.03
79 2 0.01
80 1 0.00
81 2 0.01
82 3 0.01
83 1 0.00
84 3 0.01
85 207 0.65
86 10 0.03
87 1 0.00
88 1 0.00
89 3 0.01
90 2 0.01
91 3 0.01
92 1 0.00
93 13 0.04
96 29 0.09
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.37
Consensus pattern (84 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATGATTTGACCCACTTCTCT
GTATCTCATCAGGAAGATG
Found at i:9939478 original size:48 final size:48
Alignment explanation
Indices: 9939406--9939530 Score: 196
Period size: 48 Copynumber: 2.6 Consensus size: 48
9939396 TGGATTTGGT
* * *
9939406 CCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTGCTTTGAC
1 CCACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTACTACGTTGAC
*
9939454 CCACTTCTTTGTATCTCATTAGGAAGATGACCGCTTTACTACGTTGAC
1 CCACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTACTACGTTGAC
* *
9939502 CCACTTCTCTGAATCCCATTAGGAAGATG
1 CCACTTCTCTGTATCTCATTAGGAAGATG
9939531 GATTTTGAAG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (48 bp):
CCACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTACTACGTTGAC
Found at i:9939651 original size:48 final size:47
Alignment explanation
Indices: 9939561--9939728 Score: 142
Period size: 48 Copynumber: 3.7 Consensus size: 47
9939551 ATTGAGCTTT
* * * * *
9939561 GCTTCATTGATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGATC
1 GCTTCATTGATTTGATCCACTTCTCTGTATCTCATTAGGAAGATGA-C
*
9939609 GCTTCATT-ATTGTGATCCACTTCTCTGTATCTCATTTGGAAGAT---
1 GCTTCATTGATT-TGATCCACTTCTCTGTATCTCATTAGGAAGATGAC
* *
9939653 G-------GATTTGGTCCACTTCTCTGTATCTTATTAGGAAGATGACC
1 GCTTCATTGATTTGATCCACTTCTCTGTATCTCATTAGGAAGATGA-C
* *
9939694 GCTTTATTGATTTAATCCACTTCTCTGTATCTCAT
1 GCTTCATTGATTTGATCCACTTCTCTGTATCTCAT
9939729 CAAGAAGGTA
Statistics
Matches: 95, Mismatches: 12, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
37 29 0.31
38 3 0.03
41 1 0.01
44 1 0.01
47 3 0.03
48 58 0.61
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (47 bp):
GCTTCATTGATTTGATCCACTTCTCTGTATCTCATTAGGAAGATGAC
Found at i:9939653 original size:256 final size:258
Alignment explanation
Indices: 9939196--9939735 Score: 755
Period size: 256 Copynumber: 2.1 Consensus size: 258
9939186 TGGATTTGGT
* * * * * * * *
9939196 CCACTTCTCTGTATCTCAACAGGAAGATGACTGTTTTATTACTTCAACCCACTTTTTTGTATCTC
1 CCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTACTTCAACCCACTTCTCTGAATCCC
* *
9939261 ATTAGGAAGATAGGGGTTTGAAGTTTCACTTACATCAGACTTTGCTTCATTTGATTTGGTCTACT
66 ATTAGGAAGATAGGAGTTTGAAGTTTCACTCACATCAGACTTTGCTTCATTTGATTTGGTCTACT
*
9939326 TCTCTATATCTCATCAGGAAGACGATCACTTCATTATTGCGATCCACTTCTCTATATCCCATCAA
131 TCTCTATATCTCATCAAGAAGACGATCACTTCATTATTGCGATCCACTTCTCTATATCCCATCAA
* *
9939391 GAAGATGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTGCTTTGAC
196 GAAGATGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTGATTTAAC
* * *
9939454 CCACTTCTTTGTATCTCATTAGGAAGATGACCGCTTTACTACGTT-GACCCACTTCTCTGAATCC
1 CCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTAC-TTCAACCCACTTCTCTGAATCC
* *
9939518 CATTAGGAAGAT-GGATTTTGAAGTTTCACTCACAT-TGAGCTTTGCTTCA-TTGATTTGGTCTA
65 CATTAGGAAGATAGGAGTTTGAAGTTTCACTCACATCAGA-CTTTGCTTCATTTGATTTGGTCTA
* * * * * *
9939580 CTTCTCTATATCTCATCAAGAAGATGATCGCTTCATTATTGTGATCCACTTCTCTGTATCTCATT
129 CTTCTCTATATCTCATCAAGAAGACGATCACTTCATTATTGCGATCCACTTCTCTATATCCCATC
** * * * *
9939645 TGGAAGATGGATTTGGTCCACTTCTCTGTATCTTATTAGGAAGATGACCGCTTTATTGATTTAAT
194 AAGAAGATGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTGATTTAAC
*
9939710 CCACTTCTCTGTATCTCATCAAGAAG
1 CCACTTCTCTGTATCTCATCAGGAAG
9939736 GTAAATTTGG
Statistics
Matches: 247, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
256 153 0.62
257 30 0.12
258 62 0.25
259 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (258 bp):
CCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTACTTCAACCCACTTCTCTGAATCCC
ATTAGGAAGATAGGAGTTTGAAGTTTCACTCACATCAGACTTTGCTTCATTTGATTTGGTCTACT
TCTCTATATCTCATCAAGAAGACGATCACTTCATTATTGCGATCCACTTCTCTATATCCCATCAA
GAAGATGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTGATTTAAC
Found at i:9939918 original size:209 final size:208
Alignment explanation
Indices: 9939654--9941501 Score: 1583
Period size: 209 Copynumber: 8.9 Consensus size: 208
9939644 TTGGAAGATG
* * ** *
9939654 GATTTGGTCCACTTCTCTGTATCTTATTAGGAAGATGACCGCTTTATTGATTTAATCCACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACTACTTCATTGATTTAATCCACTTCTC
* *
9939719 TGTATCTCATCAAGAAGGTAAATTTGGTCCACTTCTCTGTATCTTATCAGGAAGATGACCGCTTT
66 TGTATCTCATCAAGAAGG-AGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* * * * *
9939784 ATTACTTTGGCCTACTTCTCTGTTTCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCATATGG
130 ATTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTG
9939849 AGCTTTGCTTCATT
195 AGCTTTGCTTCATT
* * *
9939863 GATTTGTTCTACTTCTTTGTATATCATTAGGAAGATGACTACTTCATTGATTTAATCCACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACTACTTCATTGATTTAATCCACTTCTC
* * * * * *
9939928 TGTATCTTATTAGGAAGGAGGATTTGGTCTACATCTCTGTATCTCATCAGGAAGATGATCGCTTT
66 TGTATCTCATCAAGAAGGA-GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* * * *
9939993 ATTACTTTGACCTACTTCTCTGTATCTCATCAGGAAGATTGGAGTTTGAAGTTTTACTCACATTG
130 ATTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTG
9940058 AGCTTTGC-T--TT
195 AGCTTTGCTTCATT
* ** *
9940069 -A-TT-G---A--T-T-TG---GTC---AGGAAGACAACCACTTCATTGATTTAATCCACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACTACTTCATTGATTTAATCCACTTCTC
* * ** *
9940118 TGTATCTCATCAAGAAGGAGGATTTGGTCCACTTCTCTATATTTCATCAGGAAGATGACTTCCTT
66 TGTATCTCATCAAGAAGGA-GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* ** * * * *
9940183 ATTGCTTAAACCCACTTCTCTATATCTCATCAAGAAGATGGGAGTTTAAAGTTTCACTCACATTG
130 ATTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTG
9940248 AGCTTTGCTTCATT
195 AGCTTTGCTTCATT
* *
9940262 GATTTTGTCTACTTCTCTGTATCTCATTAGGAAGATGA-TCGCTTCATTGATTTAATCCACTTCT
1 GATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACT-ACTTCATTGATTTAATCCACTTCT
* * * * * *
9940326 CTGTATCTCATCAAGAAGGCGATTTGGTACAGTTCTCTATATCTCATCAGGAATATGACTGCTTT
65 CTGTATCTCATCAAGAAGGAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* * * * * * * * *
9940391 ATTTA-TTTAATCCACTACTCTGTATCTCATCAAGAAG--GTGGATTTGGTCCACTTCTCTGTTT
130 A-TTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTT-G--AAGTT-TC----A
* * * *
9940453 CTCATCA-GGAAGATGATCGCTTTATT
186 CTCA-CATTG-AGCT--TTGCTTCATT
* *** * * * ** ***** *
9940479 GCTTTAACCCACTTCTTTGTATCTCATAAAAAAGATGGGGGTTTTATTGATTTAATCCACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACTACTTCATTGATTTAATCCACTTCTC
* * * * **
9940544 TGTATTTCAAT-AGGAAAGCGA-ATTTAGTCCACTACTCTGTATCTCATCAAAAAGATGACCGCT
66 TGTATCTC-ATCAAG-AAG-GAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCT
* * * *
9940607 TTATTGCTTTGACCCATTTCTCTGTATCTCCTCAAGAAGATGGGGGTTTGAAGTTTCACTCACAT
128 TTATTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACAT
*
9940672 TGAGCTTTACTTCATT
193 TGAGCTTTGCTTCATT
* * *
9940688 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGATTTAATCTACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACTACTTCATTGATTTAATCCACTTCTC
* * * * *
9940753 TGTATCTCATCAAGAAGGAGGATTTGGTCCACTTCTTTGTATCTCATAAAGAAGATGATCGTTTT
66 TGTATCTCATCAAGAAGGA-GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
** * *
9940818 ATTGGTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGAGTTTGAAGTTTCACTCCCATTG
130 ATTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTG
*
9940883 AGCCTTGCTTCATT
195 AGCTTTGCTTCATT
* * ** *
9940897 GATTTGGTCTACTTATCTGTATCTCATCAACAAGATGACTGCTTCATTGATTTAATCCACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACTACTTCATTGATTTAATCCACTTCTC
* * * * * * * *
9940962 TTTATCTCATTAGGAAGGCATATTTGGTGCACTTCTCTGTATCTTATTAGGAAGATGACCGCTTC
66 TGTATCTCATCAAGAAGG-AGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* * * * * * * *
9941027 ATTGA-TTTAATCCTCTTCTCTGTATCTAAT-A--AAGAAGGCAGATTTGGTCCAGTTCTCTGTA
130 ATT-ACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGG-GGGTTT-G--AAGTT-TC---A
*** * * *
9941088 TCTCATCAGAAAGATGATCGCTTTATT
186 -CTCA-CATTGAGCT--TTGCTTCATT
* ** * * ** *
9941115 GCTTTGACCCACTTCTCTCTATCTCATTAGGAAGATAGGGGT--TTGATTGATTTAATCCACTTC
1 GATTTGGTCTACTTCTCTGTATCTCATTAGGAAGAT--GACTACTTCATTGATTTAATCCACTTC
** * * *
9941178 TCTGTATAACATCAGGAATGCG-GATTTGGTTCACTTCTATGTATCTCATCAGGAAGATGACCGC
64 TCTGTATCTCATCAAGAA-G-GAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGC
* * * * *
9941242 TTTATTGCTTTGACCTACTTCTCTGTATCTCATCAGGAAGATGGGGGTTCGAAGTATCACTCATA
127 TTTATTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACA
* ***
9941307 TTGATCTTCAATTCATT
192 TTGAGCTTTGCTTCATT
* * * * *
9941324 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGA-TCATTTCATTAATTTAATCCACTTCT
1 GATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACT-ACTTCATTGATTTAATCCACTTCT
* * * * * *
9941388 TTGTATCTCAT-AAGGAAGAAGAATTTGTTCCATTTCTTTGTATCTCATTAGGAAGATGACCGCT
65 CTGTATCTCATCAA-GAAGGAG-ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCT
* *
9941452 TTA-TAGCTTTGACCCATTTCTCTGTATCTTATCAGGAAGAT-GGGGTTTGA
128 TTATTA-CTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGA
9941502 TTTGCCCCTC
Statistics
Matches: 1311, Mismatches: 254, Indels: 149
0.76 0.15 0.09
Matches are distributed among these distances:
190 152 0.12
191 1 0.00
193 4 0.00
194 1 0.00
195 2 0.00
196 3 0.00
197 1 0.00
198 1 0.00
199 1 0.00
200 1 0.00
201 1 0.00
202 1 0.00
203 2 0.00
204 2 0.00
205 1 0.00
206 16 0.01
207 6 0.00
208 89 0.07
209 679 0.52
210 7 0.01
211 10 0.01
212 9 0.01
213 1 0.00
214 6 0.00
215 8 0.01
216 8 0.01
217 76 0.06
218 199 0.15
219 5 0.00
220 12 0.01
221 6 0.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.39
Consensus pattern (208 bp):
GATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACTACTTCATTGATTTAATCCACTTCTC
TGTATCTCATCAAGAAGGAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTA
TTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGA
GCTTTGCTTCATT
Found at i:9939925 original size:294 final size:293
Alignment explanation
Indices: 9939454--9940029 Score: 775
Period size: 294 Copynumber: 2.0 Consensus size: 293
9939444 CTGCTTTGAC
* *
9939454 CCACTTCTTTGTATCTCATTAGGAAGATGACCGCTTTACTACGTTGACCCACTTCTCTGAATCCC
1 CCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTACGTTGACCCACTTCTCTGAATCCC
* * *
9939519 ATTAGGAAGATGGATTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCTACTTC
66 ATCAGGAAGATGGAGTTTGAAGTTTCACTCACATGGAGCTTTGCTTCATTGATTTGGTCTACTTC
* * * *
9939584 TCTATATCTCATCAAGAAGATGATCGCTTCATTATTGTGATCCACTTCTCTGTATCTCATTTGGA
131 TCTATATATCATCAAGAAGATGATCACTTCATTATTGTAATCCACTTCTCTGTATCTCATTAGGA
* * *
9939649 A-GATGGATTTGGTCCACTTCTCTGTATCTTATTAGGAAGATGACCGCTTTATTGA-TTTAATCC
196 AGGA-GGATTTGGTCCACATCTCTGTATCTCATCAGGAAGATGACCGCTTTATT-ACTTTAA-CC
9939712 -ACTTCTCTGTATCTCATCAAGAAGGTAAATTTGGT
258 TACTTCTCTGTATCTCATCAAGAAGGTAAATTTGGT
* * * * * ** *
9939747 CCACTTCTCTGTATCTTATCAGGAAGATGACCGCTTTATTACTTTGGCCTACTTCTCTGTTTCTC
1 CCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTACGTTGACCCACTTCTCTGAATCCC
* * *
9939812 ATCAGGAAGATGGGGGTTTGAAGTTTCACTCATATGGAGCTTTGCTTCATTGATTTGTTCTACTT
66 ATCAGGAAGAT-GGAGTTTGAAGTTTCACTCACATGGAGCTTTGCTTCATTGATTTGGTCTACTT
* * * * *
9939877 CTTTGTATATCATTAGGAAGATGA-CTACTTCATTGATT-TAATCCACTTCTCTGTATCTTATTA
130 CTCTATATATCATCAAGAAGATGATC-ACTTCATT-ATTGTAATCCACTTCTCTGTATCTCATTA
* * *
9939940 GGAAGGAGGATTTGGTCTACATCTCTGTATCTCATCAGGAAGATGATCGCTTTATTACTTTGACC
193 GGAAGGAGGATTTGGTCCACATCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTAACC
*
9940005 TACTTCTCTGTATCTCATCAGGAAG
258 TACTTCTCTGTATCTCATCAAGAAG
9940030 ATTGGAGTTT
Statistics
Matches: 245, Mismatches: 32, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
293 69 0.28
294 171 0.70
295 5 0.02
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.39
Consensus pattern (293 bp):
CCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTACTACGTTGACCCACTTCTCTGAATCCC
ATCAGGAAGATGGAGTTTGAAGTTTCACTCACATGGAGCTTTGCTTCATTGATTTGGTCTACTTC
TCTATATATCATCAAGAAGATGATCACTTCATTATTGTAATCCACTTCTCTGTATCTCATTAGGA
AGGAGGATTTGGTCCACATCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTAACCTAC
TTCTCTGTATCTCATCAAGAAGGTAAATTTGGT
Found at i:9940214 original size:190 final size:190
Alignment explanation
Indices: 9939903--9940266 Score: 543
Period size: 190 Copynumber: 1.9 Consensus size: 190
9939893 GAAGATGACT
* * * * *
9939903 ACTTCATTGATTTAATCCACTTCTCTGTATCTTATTAGGAAGGAGGATTTGGTCTACATCTCTGT
1 ACTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGAGGATTTGGTCCACATCTCTAT
** * * * *
9939968 ATCTCATCAGGAAGATGATCGCTTTATTACTTTGACCTACTTCTCTGTATCTCATCAGGAAGATT
66 ATCTCATCAGGAAGATGATCGCTTTATTACTTAAACCCACTTCTCTATATCTCATCAAGAAGATG
* * *
9940033 GGAGTTTGAAGTTTTACTCACATTGAGCTTTGCTTTATTGATTTGGTCAGGAAGACAACC
131 GGAGTTTAAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCAGGAAGACAACC
*
9940093 ACTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGAGGATTTGGTCCACTTCTCTAT
1 ACTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGAGGATTTGGTCCACATCTCTAT
* *
9940158 ATTTCATCAGGAAGATGACTTC-C-TTATTGCTTAAACCCACTTCTCTATATCTCATCAAGAAGA
66 ATCTCATCAGGAAGATGA--TCGCTTTATTACTTAAACCCACTTCTCTATATCTCATCAAGAAGA
9940221 TGGGAGTTTAAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTT
129 TGGGAGTTTAAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTT
9940267 TGTCTACTTC
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
190 152 0.98
191 1 0.01
192 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (190 bp):
ACTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGAGGATTTGGTCCACATCTCTAT
ATCTCATCAGGAAGATGATCGCTTTATTACTTAAACCCACTTCTCTATATCTCATCAAGAAGATG
GGAGTTTAAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCAGGAAGACAACC
Found at i:9940403 original size:84 final size:85
Alignment explanation
Indices: 9940272--9940505 Score: 328
Period size: 84 Copynumber: 2.8 Consensus size: 85
9940262 GATTTTGTCT
* *
9940272 ACTTCTCTGTATCTCATTAGGAAGATGATCGCTTCATTGATTTAATCCACTTCTCTGTATCTCAT
1 ACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGATTTAATCCACTTCTCTGTATCTCAT
9940337 CAAGAAGG-CGATTTGGTAC
66 CAAGAAGGTCGATTTGGTAC
* * * * *
9940356 AGTTCTCTATATCTCATCAGGAATATGA-CTGCTTTATTTATTTAATCCACTACTCTGTATCTCA
1 ACTTCTCTGTATCTCATCAGGAAGATGATC-GCTTTATTGATTTAATCCACTTCTCTGTATCTCA
* *
9940420 TCAAGAAGGTGGATTTGGTCC
65 TCAAGAAGGTCGATTTGGTAC
* * * *
9940441 ACTTCTCTGTTTCTCATCAGGAAGATGATCGCTTTATTGCTTTAACCCACTTCTTTGTATCTCAT
1 ACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGATTTAATCCACTTCTCTGTATCTCAT
9940506 AAAAAAGATG
Statistics
Matches: 129, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
83 1 0.01
84 64 0.50
85 63 0.49
86 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (85 bp):
ACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGATTTAATCCACTTCTCTGTATCTCAT
CAAGAAGGTCGATTTGGTAC
Found at i:9940514 original size:48 final size:48
Alignment explanation
Indices: 9940439--9940548 Score: 121
Period size: 48 Copynumber: 2.3 Consensus size: 48
9940429 TGGATTTGGT
* * ** * *
9940439 CCACTTCTCTGTTTCTCATCAGGAAGATGATCGCTTTATTGCTTTAAC
1 CCACTTCTCTGTATCTCATAAAAAAGATGAGCGCTTTATTGATTTAAC
* * * * *
9940487 CCACTTCTTTGTATCTCATAAAAAAGATGGGGGTTTTATTGATTTAAT
1 CCACTTCTCTGTATCTCATAAAAAAGATGAGCGCTTTATTGATTTAAC
9940535 CCACTTCTCTGTAT
1 CCACTTCTCTGTAT
9940549 TTCAATAGGA
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.41
Consensus pattern (48 bp):
CCACTTCTCTGTATCTCATAAAAAAGATGAGCGCTTTATTGATTTAAC
Found at i:9940534 original size:133 final size:133
Alignment explanation
Indices: 9940388--9940655 Score: 349
Period size: 133 Copynumber: 2.0 Consensus size: 133
9940378 ATATGACTGC
* * * * * * *
9940388 TTTATTTATTTAATCCACTACTCTGTATCTC-ATCAAGAAGGTGGATTTGGTCCACTTCTCTGTT
1 TTTATTGATTTAATCCACTACTCTGTATCTCAAT-AAGAAAGCGAATTTAGTCCACTACTCTGTA
** * *
9940452 TCTCATCAGGAAGATGATCGCTTTATTGCTTTAACCCACTTCTTTGTATCTCATAAAAAAGATGG
65 TCTCATCAAAAAGATGACCGCTTTATTGCTTTAACCCACTTCTCTGTATCTCATAAAAAAGATGG
9940517 GGGT
130 GGGT
* * *
9940521 TTTATTGATTTAATCCACTTCTCTGTATTTCAATAGGAAAGCGAATTTAGTCCACTACTCTGTAT
1 TTTATTGATTTAATCCACTACTCTGTATCTCAATAAGAAAGCGAATTTAGTCCACTACTCTGTAT
* * * * *
9940586 CTCATCAAAAAGATGACCGCTTTATTGCTTTGACCCATTTCTCTGTATCTCCTCAAGAAGATGGG
66 CTCATCAAAAAGATGACCGCTTTATTGCTTTAACCCACTTCTCTGTATCTCATAAAAAAGATGGG
9940651 GGT
131 GGT
9940654 TT
1 TT
9940656 GAAGTTTCAC
Statistics
Matches: 115, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
133 113 0.98
134 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38
Consensus pattern (133 bp):
TTTATTGATTTAATCCACTACTCTGTATCTCAATAAGAAAGCGAATTTAGTCCACTACTCTGTAT
CTCATCAAAAAGATGACCGCTTTATTGCTTTAACCCACTTCTCTGTATCTCATAAAAAAGATGGG
GGT
Found at i:9940835 original size:85 final size:85
Alignment explanation
Indices: 9940688--9940854 Score: 217
Period size: 85 Copynumber: 2.0 Consensus size: 85
9940678 TTACTTCATT
* * * * *
9940688 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGATTTAATCTACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATAAAGAAGATGACCACTTCATTGATTTAACCCACTTCTC
9940753 TGTATCTCATCAAGAAGGAG
66 TGTATCTCATCAAGAAGGAG
* * ** * * *
9940773 GATTTGGTCCACTTCTTTGTATCTCATAAAGAAGATGATCGTTTTATTGGTTTGACCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATAAAGAAGATGACCACTTCATTGATTTAACCCACTTCTC
*
9940838 TGTATCTCATCAGGAAG
66 TGTATCTCATCAAGAAG
9940855 ATGGGAGTTT
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
85 69 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTGTATCTCATAAAGAAGATGACCACTTCATTGATTTAACCCACTTCTC
TGTATCTCATCAAGAAGGAG
Found at i:9941045 original size:85 final size:85
Alignment explanation
Indices: 9940897--9941148 Score: 308
Period size: 85 Copynumber: 3.0 Consensus size: 85
9940887 TTGCTTCATT
* * *
9940897 GATTTGGTCTACTTATCTGTATCTCATCA-ACAAGATGACTGCTTCATTGATTTAATCCACTTCT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGA-AAGATGACCGCTTCATTGATTTAATCCACTTCT
*
9940961 CTTTATCTCATTAGGAAGGCA
65 CTCTATCTCATTAGGAAGGCA
* * * * * *
9940982 TATTTGGTGCACTTCTCTGTATCTTATTAGGAAGATGACCGCTTCATTGATTTAATCCTCTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCTC
* * * *
9941047 TGTATCTAATAAAGAAGGCA
66 TCTATCTCATTAGGAAGGCA
* * * * * *
9941067 GATTTGGTCCAGTTCTCTGTATCTCATCAGAAAGATGATCGCTTTATTGCTTTGACCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCTC
9941132 TCTATCTCATTAGGAAG
66 TCTATCTCATTAGGAAG
9941149 ATAGGGGTTT
Statistics
Matches: 137, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
85 137 1.00
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCTC
TCTATCTCATTAGGAAGGCA
Found at i:9941289 original size:133 final size:133
Alignment explanation
Indices: 9940991--9941290 Score: 395
Period size: 133 Copynumber: 2.3 Consensus size: 133
9940981 ATATTTGGTG
* *** * * *
9940991 CACTTCTCTGTATCTTATTAGGAAGATGACCGCTTCATTGATTTAATCCTCTTCTCTGTATCTAA
1 CACTTCTCTGTATCTCATTAGGAAGATGGGGGTTTCATTGATTTAATCCACTTCTCTGTATCAAA
* * *
9941056 TAAAGAAGGCAGATTTGGTCCAGTTCTCTGTATCTCATCAGAAAGATGATCGCTTTATTGCTTTG
66 TAAAGAAGGCAGATTTGGTCCACTTCTATGTATCTCATCAGAAAGATGACCGCTTTATTGCTTTG
9941121 ACC
131 ACC
* * *
9941124 CACTTCTCTCTATCTCATTAGGAAGATAGGGGTTTGATTGATTTAATCCACTTCTCTGTAT-AAC
1 CACTTCTCTGTATCTCATTAGGAAGATGGGGGTTTCATTGATTTAATCCACTTCTCTGTATCAA-
* * * * * *
9941188 ATCAGGAATGCGGATTTGGTTCACTTCTATGTATCTCATCAGGAAGATGACCGCTTTATTGCTTT
65 ATAAAGAAGGCAGATTTGGTCCACTTCTATGTATCTCATCAGAAAGATGACCGCTTTATTGCTTT
9941253 GACC
130 GACC
* *
9941257 TACTTCTCTGTATCTCATCAGGAAGATGGGGGTT
1 CACTTCTCTGTATCTCATTAGGAAGATGGGGGTT
9941291 CGAAGTATCA
Statistics
Matches: 143, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
132 1 0.01
133 142 0.99
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (133 bp):
CACTTCTCTGTATCTCATTAGGAAGATGGGGGTTTCATTGATTTAATCCACTTCTCTGTATCAAA
TAAAGAAGGCAGATTTGGTCCACTTCTATGTATCTCATCAGAAAGATGACCGCTTTATTGCTTTG
ACC
Found at i:9941324 original size:636 final size:634
Alignment explanation
Indices: 9940079--9941501 Score: 1965
Period size: 636 Copynumber: 2.2 Consensus size: 634
9940069 ATTGATTTGG
**
9940079 TCAGGAAGACAACCACTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGAGGATTTG
1 TCAGGAAGATGACCACTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGAGGATTTG
* * * * ** *
9940144 GTCCACTTCTCTATATTTCATCAGGAAGATGAC-TTCCTTATTGCTTAAACCCACTTCTCTATAT
66 GTCCACTTCTTTGTATCTCATAAGGAAGATGACGTT--TTATTGCTTTGACCCACTTCTCTGTAT
* * * *
9940208 CTCATCAAGAAGATGGGAGTTTAAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTTGTCTA
129 CTCATCAGGAAGATGGGAGTTTGAAGTTTCACTCACATTGAGCCTTGCTTCATTGATTTGGTCTA
* * **
9940273 CTTCTCTGTATCTCATTAGGAAGATGATCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATC
194 CTTATCTGTATCTCATCAACAAGATGATCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATC
* * * * *
9940338 AAGAAGGCGATTTGGTACAGTTCTCTATATCTCATCAGGAATATGACTGCTTTATTTATTTAATC
259 AAGAAGGCGATTTGGTACACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTGATTTAATC
* * ** * *
9940403 CACTACTCTGTATCTCATCAAGAAGGTGGATTTGGTCCACTTCTCTGTTTCTCATCAGGAAGATG
324 CACTACTCTGTATCTAATAAAGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATG
* * * *
9940468 ATCGCTTTATTGCTTTAACCCACTTCTTTGTATCTCATAAAAAAGATGGGGGTTTTATTGATTTA
389 ATCGCTTTATTGCTTTAACCCACTTCTCTCTATCTCATAAAAAAGATAGGGGTTTGATTGATTTA
** *
9940533 ATCCACTTCTCTGTATTTCAATAGGAAAGCGAATTTAGTCCACTACTCTGTATCTCATCAAAAAG
454 ATCCACTTCTCTGTATAACAATAGGAAAGCGAATTTAGTCCACTACTATGTATCTCATCAAAAAG
* * * *
9940598 ATGACCGCTTTATTGCTTTGACCCATTTCTCTGTATCTCCTCAAGAAGATGGGGGTTTGAAGTTT
519 ATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGGTTCGAAGTAT
* * *
9940663 CACTCACATTGAGCTTTACTTCATTGATTTGGTCTACTTCTCTGTATCTCA
584 CACTCACATTGAGCTTCAATTCATTGATTTGGTCTACTTCTCTATATCTCA
*
9940714 TCAGGAAGATGACCACTTCATTGATTTAATCTACTTCTCTGTATCTCATCAAGAAGGAGGATTTG
1 TCAGGAAGATGACCACTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGAGGATTTG
* *
9940779 GTCCACTTCTTTGTATCTCATAAAGAAGATGATCGTTTTATTGGTTTGACCCACTTCTCTGTATC
66 GTCCACTTCTTTGTATCTCATAAGGAAGATGA-CGTTTTATTGCTTTGACCCACTTCTCTGTATC
*
9940844 TCATCAGGAAGATGGGAGTTTGAAGTTTCACTCCCATTGAGCCTTGCTTCATTGATTTGGTCTAC
130 TCATCAGGAAGATGGGAGTTTGAAGTTTCACTCACATTGAGCCTTGCTTCATTGATTTGGTCTAC
* *
9940909 TTATCTGTATCTCATCAACAAGATGA-CTGCTTCATTGATTTAATCCACTTCTCTTTATCTCATT
195 TTATCTGTATCTCATCAACAAGATGATC-GCTTCATTGATTTAATCCACTTCTCTGTATCTCATC
* * * * * *
9940973 AGGAAGGCATATTTGGTGCACTTCTCTGTATCTTATTAGGAAGATGACCGCTTCATTGATTTAAT
259 AAGAAGGC-GATTTGGTACACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTGATTTAAT
* * *
9941038 CCTCTTCTCTGTATCTAATAAAGAAGGCAGATTTGGTCCAGTTCTCTGTATCTCATCAGAAAGAT
323 CCACTACTCTGTATCTAATAAAGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGAAAGAT
* * **
9941103 GATCGCTTTATTGCTTTGACCCACTTCTCTCTATCTCATTAGGAAGATAGGGGTTTGATTGATTT
388 GATCGCTTTATTGCTTTAACCCACTTCTCTCTATCTCATAAAAAAGATAGGGGTTTGATTGATTT
* * * * * **
9941168 AATCCACTTCTCTGTATAAC-ATCAGGAATGCGGATTTGGTTCACTTCTATGTATCTCATCAGGA
453 AATCCACTTCTCTGTATAACAAT-AGGAAAGCGAATTTAGTCCACTACTATGTATCTCATCAAAA
* *
9941232 AGATGACCGCTTTATTGCTTTGACCTACTTCTCTGTATCTCATCAGGAAGATGGGGGTTCGAAGT
517 AGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGGTTCGAAGT
* *
9941297 ATCACTCATATTGATCTTCAATTCATTGATTTGGTCTACTTCTCTATATCTCA
582 ATCACTCACATTGAGCTTCAATTCATTGATTTGGTCTACTTCTCTATATCTCA
* * * * * * *
9941350 TCAAGAAGATGATCATTTCATTAATTTAATCCACTTCTTTGTATCTCAT-AAGGAAGAAGAATTT
1 TCAGGAAGATGACCACTTCATTGATTTAATCCACTTCTCTGTATCTCATCAA-GAAGGAGGATTT
* * * * * *
9941414 GTTCCATTTCTTTGTATCTCATTAGGAAGATGACCGCTTTATAGCTTTGACCCATTTCTCTGTAT
65 GGTCCACTTCTTTGTATCTCATAAGGAAGATGA-CGTTTTATTGCTTTGACCCACTTCTCTGTAT
*
9941479 CTTATCAGGAAGATGGG-GTTTGA
129 CTCATCAGGAAGATGGGAGTTTGA
9941502 TTTGCCCCTC
Statistics
Matches: 692, Mismatches: 90, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
634 1 0.00
635 246 0.36
636 443 0.64
637 2 0.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (634 bp):
TCAGGAAGATGACCACTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGAGGATTTG
GTCCACTTCTTTGTATCTCATAAGGAAGATGACGTTTTATTGCTTTGACCCACTTCTCTGTATCT
CATCAGGAAGATGGGAGTTTGAAGTTTCACTCACATTGAGCCTTGCTTCATTGATTTGGTCTACT
TATCTGTATCTCATCAACAAGATGATCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAA
GAAGGCGATTTGGTACACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCA
CTACTCTGTATCTAATAAAGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGAT
CGCTTTATTGCTTTAACCCACTTCTCTCTATCTCATAAAAAAGATAGGGGTTTGATTGATTTAAT
CCACTTCTCTGTATAACAATAGGAAAGCGAATTTAGTCCACTACTATGTATCTCATCAAAAAGAT
GACCGCTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGGTTCGAAGTATCA
CTCACATTGAGCTTCAATTCATTGATTTGGTCTACTTCTCTATATCTCA
Found at i:9941627 original size:92 final size:92
Alignment explanation
Indices: 9941504--9941693 Score: 283
Period size: 92 Copynumber: 2.1 Consensus size: 92
9941494 GGGTTTGATT
* * * * *
9941504 TGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGATGGCTTCAGTCTATCC-CTCTTGATTTAGC
1 TGCCCCTCTTGACTTAGGAGTAAAAGATTGGATGATGACTTCAATCT-GCCTCTCTTGACTTAGC
9941568 GGTAAAAGATTGGAATGTGGCTTCAATC
65 GGTAAAAGATTGGAATGTGGCTTCAATC
* *
9941596 TGCCCCTCTTGACTTAGGAGTAAATGATTGGATGATGACTTCAATCTGCCTCTCTTGACTTAGGG
1 TGCCCCTCTTGACTTAGGAGTAAAAGATTGGATGATGACTTCAATCTGCCTCTCTTGACTTAGCG
* *
9941661 GTAAAAGATTGGAATGTTGCTTTAATC
66 GTAAAAGATTGGAATGTGGCTTCAATC
9941688 TGCCCC
1 TGCCCC
9941694 ACGATCGGGG
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
91 2 0.02
92 86 0.98
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (92 bp):
TGCCCCTCTTGACTTAGGAGTAAAAGATTGGATGATGACTTCAATCTGCCTCTCTTGACTTAGCG
GTAAAAGATTGGAATGTGGCTTCAATC
Found at i:9941688 original size:46 final size:45
Alignment explanation
Indices: 9941504--9941693 Score: 245
Period size: 46 Copynumber: 4.1 Consensus size: 45
9941494 GGGTTTGATT
*
9941504 TGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGATGGCTTCAGTC
1 TGCCCCTCTTGACTTAGGGGTAAAAGATTGGATG-TGGCTTCAATC
** * *
9941550 TATCCCTCTTGATTTAGCGGTAAAAGATTGGAATGTGGCTTCAATC
1 TGCCCCTCTTGACTTAGGGGTAAAAGATTGG-ATGTGGCTTCAATC
* * *
9941596 TGCCCCTCTTGACTTAGGAGTAAATGATTGGATGATGACTTCAATC
1 TGCCCCTCTTGACTTAGGGGTAAAAGATTGGATG-TGGCTTCAATC
* * *
9941642 TGCCTCTCTTGACTTAGGGGTAAAAGATTGGAATGTTGCTTTAATC
1 TGCCCCTCTTGACTTAGGGGTAAAAGATTGG-ATGTGGCTTCAATC
9941688 TGCCCC
1 TGCCCC
9941694 ACGATCGGGG
Statistics
Matches: 122, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
45 3 0.02
46 113 0.93
47 6 0.05
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (45 bp):
TGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGTGGCTTCAATC
Found at i:9942265 original size:42 final size:44
Alignment explanation
Indices: 9942180--9942299 Score: 126
Period size: 42 Copynumber: 2.8 Consensus size: 44
9942170 TAGGGATATA
* *
9942180 AGATTCGCCTTTGCAGCTTCAATCTA--GC-CCTTTACAGCTTTG
1 AGATTCGCCTTTGCGGCTTCAATCTATTTCTCC-TTACAGCTTTG
*
9942222 AGATTCGCCTTTGCGGCTTCAATCTATTTCTCCTTA-ATC-TTG
1 AGATTCGCCTTTGCGGCTTCAATCTATTTCTCCTTACAGCTTTG
* **
9942264 AGATTTGCCTTTATGGCTTCAATCT-TCTTCTCCTTA
1 AGATTCGCCTTTGCGGCTTCAATCTAT-TTCTCCTTA
9942300 TTTTTGAGGT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 59 0.87
43 2 0.03
44 4 0.06
45 2 0.03
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (44 bp):
AGATTCGCCTTTGCGGCTTCAATCTATTTCTCCTTACAGCTTTG
Found at i:9943240 original size:10 final size:10
Alignment explanation
Indices: 9943225--9943270 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
9943215 TCTCCTTTTC
*
9943225 TTTTTCCCTT
1 TTTTTCTCTT
9943235 TTTTTCTC-T
1 TTTTTCTCTT
9943244 TTTTTCTCTT
1 TTTTTCTCTT
9943254 TTTTTCT-TT
1 TTTTTCTCTT
9943263 ATTTTTCT
1 -TTTTTCT
9943271 TTATCGAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
9 11 0.33
10 22 0.67
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTCTCTT
Found at i:9943246 original size:9 final size:9
Alignment explanation
Indices: 9943234--9943272 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
9943224 CTTTTTCCCT
9943234 TTTTTTCTC
1 TTTTTTCTC
9943243 TTTTTTCTC
1 TTTTTTCTC
9943252 TTTTTT-TC
1 TTTTTTCTC
*
9943260 TTTATTTTTC
1 TTT-TTTCTC
9943270 TTT
1 TTT
9943273 ATCGAATCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 5 0.18
9 18 0.64
10 5 0.18
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTCTC
Found at i:9943267 original size:19 final size:19
Alignment explanation
Indices: 9943225--9943270 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
9943215 TCTCCTTTTC
*
9943225 TTTTTCCCTTTTTTTCTCT
1 TTTTTCTCTTTTTTTCTCT
*
9943244 TTTTTCTCTTTTTTTCTTT
1 TTTTTCTCTTTTTTTCTCT
9943263 ATTTTTCT
1 -TTTTTCT
9943271 TTATCGAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTCTCTTTTTTTCTCT
Found at i:9948842 original size:30 final size:29
Alignment explanation
Indices: 9948808--9949018 Score: 103
Period size: 30 Copynumber: 7.1 Consensus size: 29
9948798 GGAAAAATGA
*
9948808 GGTCAAAAATGAAATTTTGGAAAGTTCGAG
1 GGTC-AAAATGAAATTTTGGAAAGTTTGAG
* *
9948838 GGTC-AAATCTAAATTTTTTGG-AAGCTTGAG
1 GGTCAAAAT-GAAA--TTTTGGAAAGTTTGAG
* * *
9948868 GGT-TAAATCCAAATTTTGGGAAAATTTGAGG
1 GGTCAAAAT-GAAATTTT-GGAAAGTTTGA-G
* * *
9948899 GGTTAAAATGTAATTTTGGAAAATTTTGA-
1 GGTCAAAATGAAATTTTGG-AAAGTTTGAG
* * * *
9948928 GGTCGAAATGTAATTTTAGAAAAGTTTAAG
1 GGTCAAAATGAAATTTT-GGAAAGTTTGAG
**
9948958 GGTCAAAAT-ATAATTTTGGAAAAGTTCAAG
1 GGTCAAAATGA-AATTTTGG-AAAGTTTGAG
* *
9948988 GGTTAAAAT-ATGATTTTTGGAAAGTTT-AG
1 GGTCAAAATGA--AATTTTGGAAAGTTTGAG
9949017 GG
1 GG
9949019 ACCTACTGGG
Statistics
Matches: 144, Mismatches: 23, Indels: 29
0.73 0.12 0.15
Matches are distributed among these distances:
28 8 0.06
29 32 0.22
30 69 0.48
31 31 0.22
32 4 0.03
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (29 bp):
GGTCAAAATGAAATTTTGGAAAGTTTGAG
Found at i:9949403 original size:9 final size:8
Alignment explanation
Indices: 9949369--9949402 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
9949359 ATCTCTCAAC
9949369 TCTCTCTTT
1 TCTCT-TTT
*
9949378 TCTCTCTT
1 TCTCTTTT
9949386 TCTCTTTT
1 TCTCTTTT
9949394 TCTCTTTT
1 TCTCTTTT
9949402 T
1 T
9949403 TTTTAGGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 18 0.78
9 5 0.22
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (8 bp):
TCTCTTTT
Found at i:9951745 original size:39 final size:39
Alignment explanation
Indices: 9951582--9951733 Score: 178
Period size: 39 Copynumber: 3.9 Consensus size: 39
9951572 AGTTATCAAC
*
9951582 ATACTGAACCAGCAGTGATACTGTAAACACTGCAATACA
1 ATACTGAACCAGCAGTGACACTGTAAACACTGCAATACA
* * * *
9951621 ATACCGAACCAGTAGTGACACTATAAACACTACAATACA
1 ATACTGAACCAGCAGTGACACTGTAAACACTGCAATACA
* ** * * *
9951660 ATATTGAACTGGTAGTGACACTGTCAACACTGCATTACA
1 ATACTGAACCAGCAGTGACACTGTAAACACTGCAATACA
* * *
9951699 ATACTGAACTAGCGGTGATACTGTAAACACTGCAA
1 ATACTGAACCAGCAGTGACACTGTAAACACTGCAA
9951734 AGAAATACTG
Statistics
Matches: 93, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.22
Consensus pattern (39 bp):
ATACTGAACCAGCAGTGACACTGTAAACACTGCAATACA
Found at i:9951756 original size:78 final size:78
Alignment explanation
Indices: 9951595--9951769 Score: 190
Period size: 78 Copynumber: 2.2 Consensus size: 78
9951585 CTGAACCAGC
* * *
9951595 AGTGATACTGTAAACACTGCAATACAATACCGAACCAGTAGTGACACTATAAACACTACAATACA
1 AGTGACACTGTAAACACTGCAATACAATACCGAACCAGCAGTGACACTATAAACACTACAATAAA
* *
9951660 ATATTGAACTGGT
66 ATACTGAACTGAT
* * * * * * * *
9951673 AGTGACACTGTCAACACTGCATTACAATACTGAACTAGCGGTGATACTGTAAACACTGCAA-AGA
1 AGTGACACTGTAAACACTGCAATACAATACCGAACCAGCAGTGACACTATAAACACTACAATA-A
*
9951737 AATACTGAATTGAT
65 AATACTGAACTGAT
* *
9951751 GGTGACATTGTAAACACTG
1 AGTGACACTGTAAACACTG
9951770 TAACGGCGTA
Statistics
Matches: 79, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
77 1 0.01
78 78 0.99
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.24
Consensus pattern (78 bp):
AGTGACACTGTAAACACTGCAATACAATACCGAACCAGCAGTGACACTATAAACACTACAATAAA
ATACTGAACTGAT
Found at i:9955780 original size:18 final size:18
Alignment explanation
Indices: 9955757--9955798 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
9955747 TAACAAAAGG
*
9955757 AATGCAGTGACAA-AATAA
1 AATGCAGGGACAATAA-AA
9955775 AATGCAGGGACAATAAAA
1 AATGCAGGGACAATAAAA
9955793 AATGCA
1 AATGCA
9955799 TGAAAATATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.55, C:0.12, G:0.19, T:0.14
Consensus pattern (18 bp):
AATGCAGGGACAATAAAA
Found at i:9965444 original size:21 final size:21
Alignment explanation
Indices: 9965418--9965460 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
9965408 TCTAGGGGCC
9965418 GAGGTAGTACCGT-TTCTGGTA
1 GAGGTAGTACCGTGTT-TGGTA
*
9965439 GAGGTAGTATCGTGTTTGGTA
1 GAGGTAGTACCGTGTTTGGTA
9965460 G
1 G
9965461 GGGTCATGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.19, C:0.09, G:0.37, T:0.35
Consensus pattern (21 bp):
GAGGTAGTACCGTGTTTGGTA
Found at i:9981590 original size:57 final size:57
Alignment explanation
Indices: 9981502--9981617 Score: 223
Period size: 57 Copynumber: 2.0 Consensus size: 57
9981492 TTGTCACTAT
9981502 AAAATAGGATCCAAATTTACGCCCAGAACTATCGCTGCACCTGACAACTGTCTGATG
1 AAAATAGGATCCAAATTTACGCCCAGAACTATCGCTGCACCTGACAACTGTCTGATG
*
9981559 AAAATAGGATCCAAATTTATGCCCAGAACTATCGCTGCACCTGACAACTGTCTGATG
1 AAAATAGGATCCAAATTTACGCCCAGAACTATCGCTGCACCTGACAACTGTCTGATG
9981616 AA
1 AA
9981618 CACACCAGAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (57 bp):
AAAATAGGATCCAAATTTACGCCCAGAACTATCGCTGCACCTGACAACTGTCTGATG
Found at i:9992477 original size:18 final size:18
Alignment explanation
Indices: 9992451--9992492 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
9992441 GCGGACACAT
* *
9992451 CATGATCAGATGCAGTCA
1 CATGCTCAGATGCAATCA
9992469 CATGCTCAGATGCAATCA
1 CATGCTCAGATGCAATCA
*
9992487 TATGCT
1 CATGCT
9992493 TGTATGTAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (18 bp):
CATGCTCAGATGCAATCA
Found at i:10006788 original size:13 final size:13
Alignment explanation
Indices: 10006770--10006794 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10006760 CCCATTTTAT
10006770 CATTTTTAGCATG
1 CATTTTTAGCATG
10006783 CATTTTTAGCAT
1 CATTTTTAGCAT
10006795 TTTTAACTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (13 bp):
CATTTTTAGCATG
Found at i:10012965 original size:43 final size:43
Alignment explanation
Indices: 10012904--10013024 Score: 197
Period size: 43 Copynumber: 2.8 Consensus size: 43
10012894 CTCTCAAGCA
*
10012904 ATCACATACTATCAATATTAGGAAACAATGTTCCATTCATTCG
1 ATCACATACTTTCAATATTAGGAAACAATGTTCCATTCATTCG
*
10012947 ATCACATACTTTCAATATTAGGAAACAATGTTGCATTCATTCG
1 ATCACATACTTTCAATATTAGGAAACAATGTTCCATTCATTCG
* *
10012990 ATCACTTACATTCAATATTTAGGAAACAATGTTCC
1 ATCACATACTTTCAATA-TTAGGAAACAATGTTCC
10013025 TCTCAATGTT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
43 56 0.78
44 16 0.22
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (43 bp):
ATCACATACTTTCAATATTAGGAAACAATGTTCCATTCATTCG
Found at i:10018754 original size:57 final size:57
Alignment explanation
Indices: 10018637--10018754 Score: 139
Period size: 58 Copynumber: 2.1 Consensus size: 57
10018627 ATCATTTTTC
* * * * * **
10018637 AAAATTGATTCATATAAGGGAAACAAAATTAGAGAAAGGGAAAATGAAAATCAATCT
1 AAAACTGATTCAGATAAAGGAAACAAAACTAGAGAAAGGGAAAATCAAAATCAAAAT
* *
10018694 AAAACTGATTCAGATAAAAGGAAACATAACTAGAGAAAGGGAAAA-CCAAATCAAAAT
1 AAAACTGATTCAGAT-AAAGGAAACAAAACTAGAGAAAGGGAAAATCAAAATCAAAAT
10018751 AAAA
1 AAAA
10018755 TTAATGAGTA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
57 25 0.49
58 26 0.51
ACGTcount: A:0.58, C:0.09, G:0.16, T:0.17
Consensus pattern (57 bp):
AAAACTGATTCAGATAAAGGAAACAAAACTAGAGAAAGGGAAAATCAAAATCAAAAT
Found at i:10018785 original size:22 final size:21
Alignment explanation
Indices: 10018757--10018797 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
10018747 AAATAAAATT
*
10018757 AATGAGTAAAGGAAGTAGATAA
1 AATGAGTAAAGAAAG-AGATAA
10018779 AATGAGTAAAGAAAGAGAT
1 AATGAGTAAAGAAAGAGAT
10018798 TTAGGTATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.56, C:0.00, G:0.27, T:0.17
Consensus pattern (21 bp):
AATGAGTAAAGAAAGAGATAA
Found at i:10019834 original size:17 final size:17
Alignment explanation
Indices: 10019812--10019845 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10019802 TGTAAATTTC
10019812 CCAAAAAGGATATAAAT
1 CCAAAAAGGATATAAAT
* *
10019829 CCAAAAATGATTTAAAT
1 CCAAAAAGGATATAAAT
10019846 TTCATGATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
CCAAAAAGGATATAAAT
Found at i:10020103 original size:18 final size:18
Alignment explanation
Indices: 10020069--10020196 Score: 166
Period size: 18 Copynumber: 7.1 Consensus size: 18
10020059 AAAGATTAGT
* *
10020069 ATACTGGATTGTTTGAGC
1 ATACTGGCTCGTTTGAGC
* * *
10020087 ATAATGGCTCATTTGAGT
1 ATACTGGCTCGTTTGAGC
* *
10020105 ATATTGGCTCGTTTGAGT
1 ATACTGGCTCGTTTGAGC
*
10020123 ATACTGGCTCGTTTAAGC
1 ATACTGGCTCGTTTGAGC
10020141 ATACTGGCTCGTTTGAGC
1 ATACTGGCTCGTTTGAGC
* *
10020159 AAACTGGCTCATTTGAGC
1 ATACTGGCTCGTTTGAGC
10020177 ATACTGGCTCGTTTGAGC
1 ATACTGGCTCGTTTGAGC
10020195 AT
1 AT
10020197 TGATCGCGCT
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 95 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (18 bp):
ATACTGGCTCGTTTGAGC
Found at i:10021411 original size:13 final size:13
Alignment explanation
Indices: 10021393--10021419 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10021383 CTAAGTTTAA
10021393 AATGCTAAAAATG
1 AATGCTAAAAATG
10021406 AATGCTAAAAATG
1 AATGCTAAAAATG
10021419 A
1 A
10021420 TAAAATGGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (13 bp):
AATGCTAAAAATG
Found at i:10022392 original size:17 final size:18
Alignment explanation
Indices: 10022359--10022392 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10022349 ATATATGGAA
10022359 ATGCAATGACAAATAAAG
1 ATGCAATGACAAATAAAG
*
10022377 ATGCAGTGAC-AATAAA
1 ATGCAATGACAAATAAA
10022393 AAAAATGCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.18
Consensus pattern (18 bp):
ATGCAATGACAAATAAAG
Found at i:10022872 original size:15 final size:15
Alignment explanation
Indices: 10022852--10022899 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
10022842 CGATAGTAGG
10022852 TTCTTTCTTTCTTTC
1 TTCTTTCTTTCTTTC
10022867 TTCTTTCATTTC-TTC
1 TTCTTTC-TTTCTTTC
10022882 TTC--TCTTT-TTTC
1 TTCTTTCTTTCTTTC
10022894 TTCTTT
1 TTCTTT
10022900 TCCTTCTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
12 9 0.31
13 2 0.07
14 1 0.03
15 13 0.45
16 4 0.14
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (15 bp):
TTCTTTCTTTCTTTC
Found at i:10022878 original size:12 final size:11
Alignment explanation
Indices: 10022856--10022913 Score: 57
Period size: 12 Copynumber: 5.1 Consensus size: 11
10022846 AGTAGGTTCT
10022856 TTCTTTCTTTC
1 TTCTTTCTTTC
10022867 TTCTTTCATTTC
1 TTCTTTC-TTTC
*
10022879 TTCTTCTCTTTT
1 TTCTT-TCTTTC
10022891 TTC-TTCTTTTCC
1 TTCTTTC-TTT-C
10022903 TTC-TTCTTTC
1 TTCTTTCTTTC
10022913 T
1 T
10022914 CCTTATCAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
10 4 0.10
11 14 0.34
12 21 0.51
13 2 0.05
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.71
Consensus pattern (11 bp):
TTCTTTCTTTC
Found at i:10022906 original size:27 final size:27
Alignment explanation
Indices: 10022852--10022913 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
10022842 CGATAGTAGG
*
10022852 TTCTTTCTTTCTTTCTTCTTTCATTTC
1 TTCTTTCTTTCTTTCTTCTTTCACTTC
10022879 TTCTTCTCTTT-TTTCTTCTTTTC-CTTC
1 TTCTT-TCTTTCTTTCTTC-TTTCACTTC
10022906 TTCTTTCT
1 TTCTTTCT
10022914 CCTTATCAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
26 3 0.09
27 20 0.62
28 9 0.28
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (27 bp):
TTCTTTCTTTCTTTCTTCTTTCACTTC
Found at i:10033781 original size:10 final size:10
Alignment explanation
Indices: 10033766--10033790 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10033756 CAGTAGCAGA
10033766 TTGGAACAGC
1 TTGGAACAGC
10033776 TTGGAACAGC
1 TTGGAACAGC
10033786 TTGGA
1 TTGGA
10033791 TTGAGGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (10 bp):
TTGGAACAGC
Found at i:10050889 original size:24 final size:24
Alignment explanation
Indices: 10050844--10050891 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
10050834 AACAAAAACT
10050844 AAAGAAACAAATTAAAGTAAAATA
1 AAAGAAACAAATTAAAGTAAAATA
*
10050868 AAAGATAA-AAATTAACAGAAAAAT
1 AAAGA-AACAAATTAA-AGTAAAAT
10050892 TACAATGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.71, C:0.04, G:0.08, T:0.17
Consensus pattern (24 bp):
AAAGAAACAAATTAAAGTAAAATA
Found at i:10056841 original size:17 final size:17
Alignment explanation
Indices: 10056819--10056852 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10056809 CACTAACACT
10056819 AAAATGCAATGACAATG
1 AAAATGCAATGACAATG
* *
10056836 AAAATGGAATGATAATG
1 AAAATGCAATGACAATG
10056853 CTTACTAACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.06, G:0.21, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATG
Found at i:10067092 original size:18 final size:18
Alignment explanation
Indices: 10067063--10067121 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
10067053 TCTTGAACAA
*
10067063 ATGCAATCACATAACCAG
1 ATGCAGTCACATAACCAG
* *
10067081 ATGTAGTCACATAACCAA
1 ATGCAGTCACATAACCAG
* *
10067099 ATGCAGCCACATAATCAG
1 ATGCAGTCACATAACCAG
10067117 ATGCA
1 ATGCA
10067122 ACCACAACAG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.42, C:0.25, G:0.14, T:0.19
Consensus pattern (18 bp):
ATGCAGTCACATAACCAG
Found at i:10080456 original size:13 final size:14
Alignment explanation
Indices: 10080438--10080468 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
10080428 TATCAATGCA
10080438 GTCAGA-GTTAAAT
1 GTCAGAGGTTAAAT
10080451 GTCAGAGGTTAAAT
1 GTCAGAGGTTAAAT
10080465 GTCA
1 GTCA
10080469 ATGTACTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (14 bp):
GTCAGAGGTTAAAT
Found at i:10082007 original size:12 final size:12
Alignment explanation
Indices: 10081986--10082017 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
10081976 TATACTAAAT
10081986 TTTTTGTCTTTTC
1 TTTTT-TCTTTTC
10081999 TTTTTTCTTTTC
1 TTTTTTCTTTTC
10082011 TTTTTTC
1 TTTTTTC
10082018 AAGTGACAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (12 bp):
TTTTTTCTTTTC
Found at i:10092186 original size:50 final size:49
Alignment explanation
Indices: 10092113--10092235 Score: 131
Period size: 50 Copynumber: 2.5 Consensus size: 49
10092103 TCCTATACCT
* * * *
10092113 CTAAAGCTATAAAGGAACGGATTAAAGCCAT-AATGGAAAATCTCATACAC
1 CTAAAGCTGTAGAGGAGCAGATTAAAG--ATCAATGGAAAATCTCATACAC
* * ** *
10092163 CTAAAGCTGTAGAGGGGCAGATTAAAGATGCATTGGTGAATCTCATTCAC
1 CTAAAGCTGTAGAGGAGCAGATTAAAGAT-CAATGGAAAATCTCATACAC
10092213 CTAAAGCTGTAGAGGAGCAGATT
1 CTAAAGCTGTAGAGGAGCAGATT
10092236 GAAGTCGCAA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
48 2 0.03
50 59 0.97
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (49 bp):
CTAAAGCTGTAGAGGAGCAGATTAAAGATCAATGGAAAATCTCATACAC
Done.