Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 39 of 143
Found at i:12104533 original size:17 final size:17
Alignment explanation
Indices: 12104503--12104543 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
12104493 AATCTAAAAG
12104503 GAATGCAGTGACAATTAA
1 GAATGCAGTGACAA-TAA
12104521 -AATGCAG-GCACAATAA
1 GAATGCAGTG-ACAATAA
12104537 GAATGCA
1 GAATGCA
12104544 TGAAATCTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.46, C:0.15, G:0.22, T:0.17
Consensus pattern (17 bp):
GAATGCAGTGACAATAA
Found at i:12117219 original size:97 final size:97
Alignment explanation
Indices: 12117044--12117219 Score: 221
Period size: 97 Copynumber: 1.8 Consensus size: 97
12117034 AACCTTGGAA
* ** *
12117044 AAGGATATTCGATTATCTCGATTTGAAGAAAAATTGCACCTACTAAGTTAAGGCACAAATTTTTA
1 AAGGATATTCGATTATCTCGATTTGAAGAAAAATTGCACCTACTAAGGTAAGAAACAAATTTTCA
* *
12117109 GAATCAGAGATAAAGAAACATTGCCTTGATTT
66 AAATCAGAAATAAAGAAACATTGCCTTGATTT
* * * * *
12117141 AAGGGTATTCGATTAT-TCCGATTTGAAGAAACATTGCGCCTAGTGAGGTAAGAAACAAATTTTC
1 AAGGATATTCGATTATCT-CGATTTGAAGAAAAATTGCACCTACTAAGGTAAGAAACAAATTTTC
12117205 AAAACTC-GAAATAAA
65 AAAA-TCAGAAATAAA
12117220 AGAATATTGT
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
96 1 0.02
97 63 0.95
98 2 0.03
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (97 bp):
AAGGATATTCGATTATCTCGATTTGAAGAAAAATTGCACCTACTAAGGTAAGAAACAAATTTTCA
AAATCAGAAATAAAGAAACATTGCCTTGATTT
Found at i:12117528 original size:29 final size:27
Alignment explanation
Indices: 12117494--12117788 Score: 204
Period size: 29 Copynumber: 10.1 Consensus size: 27
12117484 TTTCAAAAGT
12117494 TTTGGGGTCAAAAATGGAATTTTTGGACA-
1 TTTGGGGT--AAAATGGAATTTTTGGA-AG
* *
12117523 TCTGGGGGTAAAATGGTAATTTTTAGAAG
1 T-TTGGGGTAAAATGG-AATTTTTGGAAG
* * *
12117552 TTTTAGGGTTAAAATAGAATCTTTGGACA-
1 -TTT-GGGGTAAAATGGAATTTTTGGA-AG
*
12117581 TTTAGGGGTAAAATGGTAATTTTTAGAAG
1 TTT-GGGGTAAAATGG-AATTTTTGGAAG
12117610 TTTTGGGGTCTAAAATGGAATTTTTGGATA-
1 -TTTGGGG--TAAAATGGAATTTTTGGA-AG
* *
12117640 TCTGAGGGTAAAATGGTAATTTTTAGAAG
1 TTTG-GGGTAAAATGG-AATTTTTGGAAG
*
12117669 TTTTAGGGTCAAAATTGGAATTTTTGGACA-
1 -TTTGGGGT-AAAA-TGGAATTTTTGGA-AG
*
12117699 TTTGGGGGTAAAATAGTAATTTTTGGAAG
1 TTT-GGGGTAAAAT-GGAATTTTTGGAAG
* *
12117728 TTTTGGGGTCAAAAATGGAATTTTTTGATG
1 -TTTGGGGT--AAAATGGAATTTTTGGAAG
12117758 TTTAGGGGTAAAATGGTAA-TTTTGGAAG
1 TTT-GGGGTAAAATGG-AATTTTTGGAAG
12117786 TTT
1 TTT
12117789 CAGGGTCAAA
Statistics
Matches: 215, Mismatches: 24, Indels: 55
0.73 0.08 0.19
Matches are distributed among these distances:
28 51 0.24
29 75 0.35
30 71 0.33
31 18 0.08
ACGTcount: A:0.31, C:0.03, G:0.27, T:0.39
Consensus pattern (27 bp):
TTTGGGGTAAAATGGAATTTTTGGAAG
Found at i:12117545 original size:59 final size:59
Alignment explanation
Indices: 12117469--12117799 Score: 423
Period size: 59 Copynumber: 5.6 Consensus size: 59
12117459 TGGATACCCC
* * * * *
12117469 GGGTAAAACGATAATTTTCAAAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATCTGG
1 GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATTTGG
* * * * *
12117528 GGGTAAAATGGTAATTTTTAGAAGTTTTAGGGT-TAAAATAGAATCTTTGGACATTTAG
1 GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATTTGG
* * * *
12117586 GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCTAAAATGGAATTTTTGGATATCTGA
1 GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATTTGG
* *
12117645 GGGTAAAATGGTAATTTTTAGAAGTTTTAGGGTCAAAATTGGAATTTTTGGACATTTGG
1 GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATTTGG
* * * ** *
12117704 GGGTAAAATAGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGAATTTTTTGATGTTTAG
1 GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATTTGG
* **
12117763 GGGTAAAATGGTAA-TTTTGGAAGTTTCAGGGTCAAAA
1 GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCAAAA
12117800 CGCAAATTTT
Statistics
Matches: 237, Mismatches: 34, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
58 73 0.31
59 164 0.69
ACGTcount: A:0.32, C:0.04, G:0.27, T:0.37
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATTTGG
Found at i:12117675 original size:117 final size:118
Alignment explanation
Indices: 12117469--12117799 Score: 470
Period size: 117 Copynumber: 2.8 Consensus size: 118
12117459 TGGATACCCC
* * * * * *
12117469 GGGTAAAACGATAATTTTCAAAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATCTGGGGGTAA
1 GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCAAAAATGGAATTTTTGGATATCTGAGGGTAA
*
12117534 AATGGTAATTTTTAGAAGTTTTAGGGTTAAAA-TAGAATCTTTGGACATTTAG
66 AATGGTAATTTTTAGAAGTTTTAGGGTCAAAATTAGAATCTTTGGACATTTAG
*
12117586 GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCTAAAATGGAATTTTTGGATATCTGAGGGTAA
1 GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCAAAAATGGAATTTTTGGATATCTGAGGGTAA
* * *
12117651 AATGGTAATTTTTAGAAGTTTTAGGGTCAAAATTGGAATTTTTGGACATTTGG
66 AATGGTAATTTTTAGAAGTTTTAGGGTCAAAATTAGAATCTTTGGACATTTAG
* * * * *
12117704 GGGTAAAATAGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGAATTTTTTGATGT-TTAGGGGTA
1 GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCAAAAATGGAATTTTTGGATATCTGA-GGGTA
* *
12117768 AAATGGTAA-TTTTGGAAGTTTCAGGGTCAAAA
65 AAATGGTAATTTTTAGAAGTTTTAGGGTCAAAA
12117800 CGCAAATTTT
Statistics
Matches: 193, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
117 112 0.58
118 81 0.42
ACGTcount: A:0.32, C:0.04, G:0.27, T:0.37
Consensus pattern (118 bp):
GGGTAAAATGGTAATTTTTAGAAGTTTTGGGGTCAAAAATGGAATTTTTGGATATCTGAGGGTAA
AATGGTAATTTTTAGAAGTTTTAGGGTCAAAATTAGAATCTTTGGACATTTAG
Found at i:12117793 original size:29 final size:29
Alignment explanation
Indices: 12117490--12117852 Score: 243
Period size: 30 Copynumber: 12.3 Consensus size: 29
12117480 TAATTTTCAA
*
12117490 AAGTTTTGGGGTCAAAAATGG-AATTTTTGG
1 AAGTTTAGGGGT--AAAATGGTAATTTTTGG
* * *
12117520 ACA-TCTGGGGGTAAAATGGTAATTTTTAG
1 A-AGTTTAGGGGTAAAATGGTAATTTTTGG
* * *
12117549 AAGTTTTAGGGTTAAAATAG-AATCTTTGG
1 AAG-TTTAGGGGTAAAATGGTAATTTTTGG
*
12117578 ACA-TTTAGGGGTAAAATGGTAATTTTTAG
1 A-AGTTTAGGGGTAAAATGGTAATTTTTGG
*
12117607 AAGTTTTGGGGTCTAAAATGG-AATTTTTGG
1 AAGTTTAGGGG--TAAAATGGTAATTTTTGG
* *
12117637 ATA-TCT-GAGGGTAAAATGGTAATTTTTAG
1 A-AGTTTAG-GGGTAAAATGGTAATTTTTGG
12117666 AAGTTTTA-GGGTCAAAATTGG-AATTTTTGG
1 AAG-TTTAGGGGT-AAAA-TGGTAATTTTTGG
* *
12117696 ACA-TTTGGGGGTAAAATAGTAATTTTTGG
1 A-AGTTTAGGGGTAAAATGGTAATTTTTGG
* *
12117725 AAGTTTTGGGGTCAAAAATGG-AATTTTTTG
1 AAGTTTAGGGGT--AAAATGGTAATTTTTGG
*
12117755 ATGTTTAGGGGTAAAATGGTAA-TTTTGG
1 AAGTTTAGGGGTAAAATGGTAATTTTTGG
* * * *
12117783 AAGTTTCA-GGGTCAAAA-CGCAAATTTTGAA
1 AAGTTT-AGGGGT-AAAATGGTAATTTTTG-G
* *
12117813 AACTTTAGGGGTCAAAAT-GTGATTTTTGG
1 AAGTTTAGGGGT-AAAATGGTAATTTTTGG
12117842 ATAGTTTAGGG
1 A-AGTTTAGGG
12117853 ACATTCTAAG
Statistics
Matches: 265, Mismatches: 37, Indels: 62
0.73 0.10 0.17
Matches are distributed among these distances:
28 59 0.22
29 85 0.32
30 101 0.38
31 20 0.08
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.37
Consensus pattern (29 bp):
AAGTTTAGGGGTAAAATGGTAATTTTTGG
Found at i:12118738 original size:9 final size:9
Alignment explanation
Indices: 12118712--12118777 Score: 51
Period size: 9 Copynumber: 6.7 Consensus size: 9
12118702 TTTATGTTAT
12118712 TTAATATTA
1 TTAATATTA
12118721 TACTAATATTA
1 T--TAATATTA
12118732 TTAATATTA
1 TTAATATTA
*
12118741 TAATAATTAATA
1 T--TAA-TATTA
12118753 TTAATATTA
1 TTAATATTA
* *
12118762 ATGATATCTA
1 TTAATAT-TA
12118772 TTAATA
1 TTAATA
12118778 CGTTTTGAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
9 19 0.42
10 9 0.20
11 12 0.27
12 5 0.11
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (9 bp):
TTAATATTA
Found at i:12119411 original size:6 final size:6
Alignment explanation
Indices: 12119392--12119477 Score: 51
Period size: 6 Copynumber: 15.0 Consensus size: 6
12119382 ATTATTTAAA
* *
12119392 TAAATT TAATTT TAAATT TATAA-- TAAATT TAAATT TCCAA-- TAAATT
1 TAAATT TAAATT TAAATT TA-AATT TAAATT TAAATT T-AAATT TAAATT
* * *
12119438 TAAATT TAAA-A TAAACT TAATTT TGAAA-- TAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT T-AAATT TAAATT TAAATT
12119478 CTGTTGGGCC
Statistics
Matches: 61, Mismatches: 9, Indels: 20
0.68 0.10 0.22
Matches are distributed among these distances:
4 7 0.11
5 8 0.13
6 40 0.66
7 6 0.10
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.45
Consensus pattern (6 bp):
TAAATT
Found at i:12119424 original size:17 final size:16
Alignment explanation
Indices: 12119402--12119477 Score: 89
Period size: 17 Copynumber: 4.5 Consensus size: 16
12119392 TAAATTTAAT
12119402 TTTAAATTTATAATAAA
1 TTTAAATTTA-AATAAA
*
12119419 TTTAAATTTCCAATAAA
1 TTTAAATTT-AAATAAA
12119436 TTTAAATTTAAAATAAA
1 TTTAAATTT-AAATAAA
* *
12119453 CTTAATTTTGAAATAAA
1 TTTAAATTT-AAATAAA
12119470 TTTAAATT
1 TTTAAATT
12119478 CTGTTGGGCC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
17 50 1.00
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (16 bp):
TTTAAATTTAAATAAA
Found at i:12119443 original size:34 final size:34
Alignment explanation
Indices: 12119402--12119477 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
12119392 TAAATTTAAT
* * *
12119402 TTTAAATTTATAATAAATTTAAATTTCCAATAAA
1 TTTAAATTTAAAATAAACTTAAATTTCAAATAAA
* *
12119436 TTTAAATTTAAAATAAACTTAATTTTGAAATAAA
1 TTTAAATTTAAAATAAACTTAAATTTCAAATAAA
12119470 TTTAAATT
1 TTTAAATT
12119478 CTGTTGGGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (34 bp):
TTTAAATTTAAAATAAACTTAAATTTCAAATAAA
Found at i:12120702 original size:138 final size:139
Alignment explanation
Indices: 12120533--12120810 Score: 386
Period size: 138 Copynumber: 2.0 Consensus size: 139
12120523 TGGAGAAAAG
* * * *
12120533 TAATATATGAATTTGACTCGTACAAAATATT-ATTCGTATGTATTTTATCGAAA-TTATTAATAT
1 TAATATATGAATTTAACTCATACAAAATATTAATT-GTATATATTTTA-CCAAATTTATTAATAT
* * *
12120596 AAATAGTTATAATAATTAATTTTAG-TCCATATATAAAAGACGTGGAAAA-TAATATTCTTTT-G
64 AAATAGTTATAATAATTAA-TTTAGTTCAAAATATAAAAGACAT-GAAAATTAATATTCTTTTGG
*
12120658 AAAAGAATATAAT
127 AAAAAAATATAAT
*
12120671 TAATATATGAATTTAATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAA
1 TAATATATGAATTTAACTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAA
* *
12120736 ATAGTTATATTAATTAATTTCGTTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAA
66 ATAGTTATAATAATTAATTTAGTTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAA
12120801 AAATATAAT
131 AAATATAAT
12120810 T
1 T
12120811 CTTTCTTCTA
Statistics
Matches: 124, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
137 13 0.10
138 94 0.76
139 17 0.14
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (139 bp):
TAATATATGAATTTAACTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAA
ATAGTTATAATAATTAATTTAGTTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAA
AAATATAAT
Found at i:12121797 original size:30 final size:26
Alignment explanation
Indices: 12121765--12121818 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
12121755 TTCTTCATTT
12121765 TCTTTCTTTCTTTCCAAGCATAAGCA
1 TCTTTCTTTCTTTCCAAGCATAAGCA
12121791 TCTTTCTTTCTTTCCAAGCATAAGCA
1 TCTTTCTTTCTTTCCAAGCATAAGCA
12121817 TC
1 TC
12121819 CATAATCCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.22, C:0.28, G:0.07, T:0.43
Consensus pattern (26 bp):
TCTTTCTTTCTTTCCAAGCATAAGCA
Found at i:12129366 original size:43 final size:43
Alignment explanation
Indices: 12129305--12129532 Score: 354
Period size: 43 Copynumber: 5.3 Consensus size: 43
12129295 TAGCGGCATT
12129305 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
12129348 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCCAC
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTT-TCCCAC
* *
12129392 AAGCGCCGCTAAA-GCCATGTTCTTTAACGACGCTTTCTCCCAC
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTT-TCCCAC
*
12129435 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGACGC-TTTCTCCAC
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTC-CCAC
* *
12129478 AAGCGCCGCTAAAGGCCATGTTCATTAGCGGCGC-TTTCTCCAA
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTC-CCAC
12129521 AAGCGCCGCTAA
1 AAGCGCCGCTAA
12129533 TATAACAGAT
Statistics
Matches: 176, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
42 2 0.01
43 136 0.77
44 38 0.22
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.24
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
Found at i:12129451 original size:87 final size:87
Alignment explanation
Indices: 12129305--12129532 Score: 381
Period size: 87 Copynumber: 2.6 Consensus size: 87
12129295 TAGCGGCATT
12129305 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTT-TCCCACAAGCGCCGCTAAAGGCCATGT
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCCACAAGCGCCGCTAAAGGCCATGT
*
12129369 TCTTTAGCGGCGCTTTCTCCCAC
66 TCTTTAGCGACGCTTTCT-CCAC
* *
12129392 AAGCGCCGCTAAA-GCCATGTTCTTTAACGACGCTTTCTCCCACAAGCGCCGCTAAAGGCCATGT
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCCACAAGCGCCGCTAAAGGCCATGT
12129456 TCTTTAGCGACGCTTTCTCCAC
66 TCTTTAGCGACGCTTTCTCCAC
* *
12129478 AAGCGCCGCTAAAGGCCATGTTCATTAGCGGCGCTTTCT-CCAAAAGCGCCGCTAA
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCCACAAGCGCCGCTAA
12129533 TATAACAGAT
Statistics
Matches: 132, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
86 53 0.40
87 79 0.60
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.24
Consensus pattern (87 bp):
AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCCACAAGCGCCGCTAAAGGCCATGT
TCTTTAGCGACGCTTTCTCCAC
Found at i:12129877 original size:24 final size:21
Alignment explanation
Indices: 12129830--12129882 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
12129820 CTTGTAGCCT
* *
12129830 CTGCTTCCTTCGCTTGCCTCG
1 CTGCTGCCTCCGCTTGCCTCG
*
12129851 CTGCTGCCTCCGCTTGCCTCA
1 CTGCTGCCTCCGCTTGCCTCG
12129872 CTGCTGCCTCC
1 CTGCTGCCTCC
12129883 ACTTTAAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.02, C:0.47, G:0.19, T:0.32
Consensus pattern (21 bp):
CTGCTGCCTCCGCTTGCCTCG
Found at i:12129954 original size:66 final size:66
Alignment explanation
Indices: 12129868--12130025 Score: 244
Period size: 66 Copynumber: 2.4 Consensus size: 66
12129858 CTCCGCTTGC
* * * * *
12129868 CTCACTGCTGCCTCCACTTTAAGTTGTAGGTGGAGTTCTTTATATTTTTTTTGAGACTCTGCTTC
1 CTCACTGCAGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCATATTTTTTTTGAGACTCTGCTTC
12129933 T
66 T
* *
12129934 CTCACTGCAGCCTCCTCTTTAAGTTTTAGATGGAGTTCATCATATTTTTTTTGAGCCTCTGCTTC
1 CTCACTGCAGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCATATTTTTTTTGAGACTCTGCTTC
12129999 T
66 T
*
12130000 CTCGCTGCAGCCTCCTCTTTAAGTTG
1 CTCACTGCAGCCTCCTCTTTAAGTTG
12130026 AGCAATTTGC
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 83 1.00
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.43
Consensus pattern (66 bp):
CTCACTGCAGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCATATTTTTTTTGAGACTCTGCTTC
T
Found at i:12135492 original size:31 final size:33
Alignment explanation
Indices: 12135450--12135516 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
12135440 TTGATTTAAA
12135450 TTTAAAA-ATATATATTAGTAACAACATTTTAC
1 TTTAAAATATATATATTAGTAACAACATTTTAC
*
12135482 TTTAAAATATATATATTAGTGACAACATTTTAC
1 TTTAAAATATATATATTAGTAACAACATTTTAC
12135515 TT
1 TT
12135517 AAATATTTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 7 0.21
33 26 0.79
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.43
Consensus pattern (33 bp):
TTTAAAATATATATATTAGTAACAACATTTTAC
Found at i:12135572 original size:22 final size:21
Alignment explanation
Indices: 12135536--12135672 Score: 93
Period size: 22 Copynumber: 6.3 Consensus size: 21
12135526 GGTTCTTTTT
*
12135536 ATTAA-TTAAATAATTAAATA
1 ATTAATTTATATAATTAAATA
*
12135556 TTTAATTTAGTATAATTAAATA
1 ATTAATTTA-TATAATTAAATA
*
12135578 ATTAATTAAT-TAATTAAAATTA
1 ATTAATTTATATAATT-AAA-TA
**
12135600 ATTAATTATATATAATTATTTA
1 ATTAATT-TATATAATTAAATA
* *
12135622 CGA-AAATATTTTA-AATTAAATA
1 --ATTAAT-TTATATAATTAAATA
* *
12135644 TTTAATTAAATATAATTAAATA
1 ATTAATT-TATATAATTAAATA
12135666 ATTAATT
1 ATTAATT
12135673 GATACTGTTT
Statistics
Matches: 89, Mismatches: 16, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
20 10 0.11
21 12 0.13
22 51 0.57
23 9 0.10
24 7 0.08
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (21 bp):
ATTAATTTATATAATTAAATA
Found at i:12135585 original size:4 final size:4
Alignment explanation
Indices: 12135536--12135617 Score: 69
Period size: 4 Copynumber: 20.0 Consensus size: 4
12135526 GGTTCTTTTT
* * * * *
12135536 ATTA ATTA AATA ATTA AATA TTTA ATTTA GTATA ATTA AATA ATTA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA A-TTA AT-TA ATTA ATTA ATTA ATTA
12135586 ATTA ATTA A--A ATTA ATTA ATTA TATATA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA -AT-TA ATTA
12135618 TTTACGAAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
2 2 0.03
4 48 0.77
5 10 0.16
6 2 0.03
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (4 bp):
ATTA
Found at i:12135616 original size:18 final size:18
Alignment explanation
Indices: 12135575--12135617 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
12135565 GTATAATTAA
12135575 ATAATTAATTAATTAATT
1 ATAATTAATTAATTAATT
*
12135593 AAAATTAATTAATT-ATAT
1 ATAATTAATTAATTAAT-T
12135611 ATAATTA
1 ATAATTA
12135618 TTTACGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATAATTAATTAATTAATT
Found at i:12135661 original size:10 final size:11
Alignment explanation
Indices: 12135635--12135672 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
12135625 AAATATTTTA
12135635 AATTAAATATTT
1 AATTAAATA-TT
12135647 AATTAAATA-T
1 AATTAAATATT
12135657 AATTAAATAATT
1 AATTAAAT-ATT
12135669 AATT
1 AATT
12135673 GATACTGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 9 0.38
11 1 0.04
12 14 0.58
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
AATTAAATATT
Found at i:12135742 original size:112 final size:105
Alignment explanation
Indices: 12135693--12136751 Score: 1130
Period size: 112 Copynumber: 9.9 Consensus size: 105
12135683 ACAATTAAAT
* * *
12135693 ACATAATTAAACATAATTAATTAATTTAATGTAATTATTCACTTTAATATAAATTAAATAATTAA
1 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTT-A-AT--A-T--A-AATTAA
* * * *
12135758 ATATTTTAAATTAATTATTTAATTAATTTAAAGTATTTACAATTAAAT
58 ATATTTTAAATTAATTATTTAATTAATTGATACTGTTTACAATTAAAT
* *
12135806 ACATAATTAAACATAATTAAATAATTAAATATAATTATTTAGTTTAATATAATTAAATAATTAAA
1 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTT-A-AT-A-T--A-AATTAAA
* * *
12135871 TATTTTAAATTAATTTTTTAATTAATTGATACTGTTTATATTTAAAT
59 TATTTTAAATTAATTATTTAATTAATTGATACTGTTTACAATTAAAT
*
12135918 ACATAATTAAACATAATTAAATAATTTAACATAATTATTTACTTTAATAT-AATTAAATATTTTA
1 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAAATTAAATATTTTA
*
12135982 AATTAATTATTTAATTACTTGATACTGTTTACAATTAAAT
66 AATTAATTATTTAATTAATTGATACTGTTTACAATTAAAT
*
12136022 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTAGTTTAATATAATTAAATAATTAAA
1 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTT-A-AT-A-T--A-AATTAAA
*
12136087 TATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAAT
59 TATTTTAAATTAATTATTTAATTAATTGATACTGTTTACAATTAAAT
*
12136134 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTAC-TTAATAT-AATTAAATTTTTTA
1 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAAATTAAATATTTTA
*
12136197 AATTAATTATTTAATTAATTGATACTATTTACAATTAAAT
66 AATTAATTATTTAATTAATTGATACTGTTTACAATTAAAT
* *
12136237 ACATAATTAAACATAATTAAATAATTT-A-ATAATTA---AATCT-AT-TAAATTAAATATGTAA
1 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAAATTAAATAT-T--
* * * * ** * *
12136295 TT-AATTGATACTGTTTACAATTAAAT-ACA-TAATTAAACA-TAATT
63 TTAAATT-A-ATTATTT--AATTAATTGATACTGTTTACA-ATTAAAT
* * * ** *
12136339 AAATAATTTAATATAATTATTTAGTTT-A-AT-A-TA---A--TTAA-AT-AATTAAATATTTTA
1 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAAATTAAATATTTTA
*
12136393 AATTAATTATTTAATTAATTGATACTGTTTATAATTAAAT
66 AATTAATTATTTAATTAATTGATACTGTTTACAATTAAAT
*
12136433 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATAT-AATTAAATTTTTTA
1 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAAATTAAATATTTTA
* *
12136497 AATTAATTATTTAATTAATTGATGCTATTTACAATTAAAT
66 AATTAATTATTTAATTAATTGATACTGTTTACAATTAAAT
12136537 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATAT-AATTAAATAATTAA
1 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAAATT--A-AA-T--
* * *
12136601 ATCTATTAAATTAAATATTTAATTAATTGGTACTGTTTATAATTAAAT
60 AT-T-TTAAATTAATTATTTAATTAATTGATACTGTTTACAATTAAAT
12136649 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATAT-AATTAAATAATTAA
1 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAAATTAAAT-A-T--
*
12136713 ATCATTCAAATTAAATATTTAATTAATTGATACTGTTTA
62 -T--TT-AAATTAATTATTTAATTAATTGATACTGTTTA
12136752 TAATAATATA
Statistics
Matches: 829, Mismatches: 70, Indels: 95
0.83 0.07 0.10
Matches are distributed among these distances:
92 7 0.01
93 3 0.00
94 35 0.04
95 4 0.00
96 6 0.01
97 3 0.00
98 25 0.03
99 4 0.00
100 7 0.01
101 12 0.01
102 40 0.05
103 85 0.10
104 206 0.25
105 1 0.00
106 3 0.00
107 6 0.01
108 6 0.01
109 5 0.01
110 6 0.01
111 7 0.01
112 313 0.38
113 45 0.05
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.45
Consensus pattern (105 bp):
ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAAATTAAATATTTTA
AATTAATTATTTAATTAATTGATACTGTTTACAATTAAAT
Found at i:12135757 original size:8 final size:8
Alignment explanation
Indices: 12135744--12135872 Score: 57
Period size: 8 Copynumber: 15.1 Consensus size: 8
12135734 CTTTAATATA
12135744 AATTAAAT
1 AATTAAAT
12135752 AATTAAAT
1 AATTAAAT
*
12135760 ATTTTAAATT
1 A-ATTAAA-T
**
12135770 AATTATTT
1 AATTAAAT
12135778 AATT-AAT
1 AATTAAAT
12135785 --TTAAAGT
1 AATTAAA-T
*
12135792 ATTTACAATT
1 AATTA-AA-T
* *
12135802 AAATACAT
1 AATTAAAT
12135810 AATTAAACAT
1 AATT-AA-AT
12135820 AATTAAAT
1 AATTAAAT
12135828 AATTAAATAT
1 AATT-AA-AT
**
12135838 AATTATTT
1 AATTAAAT
*
12135846 AGTTTAATAT
1 A-ATTAA-AT
12135856 AATTAAAT
1 AATTAAAT
12135864 AATTAAAT
1 AATTAAAT
12135872 A
1 A
12135873 TTTTAAATTA
Statistics
Matches: 90, Mismatches: 18, Indels: 26
0.67 0.13 0.19
Matches are distributed among these distances:
5 2 0.02
6 2 0.02
7 2 0.02
8 37 0.41
9 25 0.28
10 22 0.24
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (8 bp):
AATTAAAT
Found at i:12135757 original size:18 final size:18
Alignment explanation
Indices: 12135736--12135869 Score: 55
Period size: 18 Copynumber: 7.2 Consensus size: 18
12135726 ATTATTCACT
12135736 TTAATATAAATTAAATAA
1 TTAATATAAATTAAATAA
* *
12135754 TTAAATATTTTAAATTAATTAT
1 TT-AATA---TAAATTAAATAA
* *
12135776 TTAAT-TAATTTAAAGTAT
1 TTAATATAAATTAAA-TAA
*
12135794 TTACA-ATTAAA-TACATAA
1 TTA-ATA-TAAATTAAATAA
*
12135812 TTAA-ACATAATTAAATAA
1 TTAATATA-AATTAAATAA
** *
12135830 TTAA-ATATAATTATTTAGT
1 TTAATATA-AATTAAATA-A
12135849 TTAATAT-AATTAAATAA
1 TTAATATAAATTAAATAA
12135866 TTAA
1 TTAA
12135870 ATATTTTAAA
Statistics
Matches: 88, Mismatches: 16, Indels: 25
0.68 0.12 0.19
Matches are distributed among these distances:
16 1 0.01
17 15 0.17
18 40 0.45
19 12 0.14
20 5 0.06
21 3 0.03
22 12 0.14
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (18 bp):
TTAATATAAATTAAATAA
Found at i:12135768 original size:22 final size:22
Alignment explanation
Indices: 12135742--12135883 Score: 62
Period size: 22 Copynumber: 6.4 Consensus size: 22
12135732 CACTTTAATA
12135742 TAAATTAAATAATTAAATATTT
1 TAAATTAAATAATTAAATATTT
* * * *
12135764 TAAATTAATTATTTAATTAATT
1 TAAATTAAATAATTAAATATTT
** * **
12135786 TAAAGTATTTACAATTAAATA-CA
1 TAAA-T-TAAATAATTAAATATTT
*
12135809 T-AATTAAACATAATTAAATA-AT
1 TAAATT-AA-ATAATTAAATATTT
**
12135831 TAAA-T--ATAATTATTTAGTTT
1 TAAATTAAATAATTAAATA-TTT
12135851 AATATAATTAAATAATTAAATATTT
1 --TA-AATTAAATAATTAAATATTT
12135876 TAAATTAA
1 TAAATTAA
12135884 TTTTTTAATT
Statistics
Matches: 85, Mismatches: 22, Indels: 26
0.64 0.17 0.20
Matches are distributed among these distances:
18 9 0.11
20 2 0.02
21 1 0.01
22 44 0.52
23 8 0.09
24 9 0.11
25 3 0.04
26 9 0.11
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (22 bp):
TAAATTAAATAATTAAATATTT
Found at i:12135819 original size:10 final size:10
Alignment explanation
Indices: 12135806--12135842 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
12135796 ACAATTAAAT
12135806 ACATAATTAA
1 ACATAATTAA
12135816 ACATAATT-A
1 ACATAATTAA
12135825 A-ATAATTAA
1 ACATAATTAA
*
12135834 ATATAATTA
1 ACATAATTA
12135843 TTTAGTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 6 0.24
9 4 0.16
10 15 0.60
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.35
Consensus pattern (10 bp):
ACATAATTAA
Found at i:12135933 original size:10 final size:10
Alignment explanation
Indices: 12135918--12135954 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
12135908 ATATTTAAAT
12135918 ACATAATTAA
1 ACATAATTAA
12135928 ACATAATT-A
1 ACATAATTAA
*
12135937 A-ATAATTTA
1 ACATAATTAA
12135946 ACATAATTA
1 ACATAATTA
12135955 TTTACTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
8 6 0.25
9 4 0.17
10 14 0.58
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (10 bp):
ACATAATTAA
Found at i:12136063 original size:216 final size:216
Alignment explanation
Indices: 12135635--12136267 Score: 998
Period size: 216 Copynumber: 2.9 Consensus size: 216
12135625 AAATATTTTA
** *
12135635 AATTAAATATTTAATTAAATATAATTAAATAATTAATTGATACTGTTTACAATTAAATACATAAT
1 AATTAAATA-TT--TTAAAT-TAATTATTTAATTAATTGATACTGTTTATAATTAAATACATAAT
* * *
12135700 TAAACATAATTAATTAATTTAATGTAATTATTCACTTTAATATAAATTAAATAATTAAATATTTT
62 TAAACATAATTAAATAATTTAATATAATTATTTAC--T--T-T-AA-T--ATAATTAAATATTTT
* * *
12135765 AAATTAATTATTTAATTAATTTAAAGTATTTACAATTAAATACATAATTAAACATAATTAAATAA
118 AAATTAATTATTTAATTAATTGATACTATTTACAATTAAATACATAATTAAACATAATTAAATAA
*
12135830 TTAAATATAATTATTTAGTTTAATATAATTAAAT
183 TTTAATATAATTATTTAGTTTAATATAATTAAAT
* *
12135864 AATTAAATATTTTAAATTAATTTTTTAATTAATTGATACTGTTTATATTTAAATACATAATTAAA
1 AATTAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATACATAATTAAA
*
12135929 CATAATTAAATAATTTAACATAATTATTTACTTTAATATAATTAAATATTTTAAATTAATTATTT
66 CATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATATTTTAAATTAATTATTT
* *
12135994 AATTACTTGATACTGTTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTA
131 AATTAATTGATACTATTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTA
12136059 TTTAGTTTAATATAATTAAAT
196 TTTAGTTTAATATAATTAAAT
12136080 AATTAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATACATAATTAAA
1 AATTAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATACATAATTAAA
*
12136145 CATAATTAAATAATTTAATATAATTATTTAC-TTAATATAATTAAATTTTTTAAATTAATTATTT
66 CATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATATTTTAAATTAATTATTT
12136209 AATTAATTGATACTATTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATA
131 AATTAATTGATACTATTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATA
12136268 ATTAAATCTA
Statistics
Matches: 383, Mismatches: 21, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
215 89 0.23
216 201 0.52
218 1 0.00
219 2 0.01
220 1 0.00
221 1 0.00
223 1 0.00
225 70 0.18
226 6 0.02
228 2 0.01
229 9 0.02
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.45
Consensus pattern (216 bp):
AATTAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATACATAATTAAA
CATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATATTTTAAATTAATTATTT
AATTAATTGATACTATTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTA
TTTAGTTTAATATAATTAAAT
Found at i:12136158 original size:84 final size:86
Alignment explanation
Indices: 12136065--12136357 Score: 324
Period size: 84 Copynumber: 3.2 Consensus size: 86
12136055 ATTATTTAGT
* *
12136065 TTAATATAA-TTAA-ATAATTAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAA
1 TTAA-ATAATTTAATATAATTAAATATATTAAATTAATTATTTAATTAATTGATACTGTTTACAA
12136128 TTAAATACATAATTAAACATAA
65 TTAAATACATAATTAAACATAA
**
12136150 TTAAATAATTTAATATAATTATTTACTTAATATAATTAAATTTTTTAAATTAATTATTTAATTAA
1 TTAAATAATTTAATAT-A--A-TTA---AATAT-ATTAAATTAATT--ATT-------TAATTAA
*
12136215 TTGATACTATTTACAATTAAATACATAATTAAACATAA
49 TTGATACTGTTTACAATTAAATACATAATTAAACATAA
* * *
12136253 TTAAATAATTT-A-ATAATTAAATCTATTAAATTAAATATGTAATTAATTGATACTGTTTACAAT
1 TTAAATAATTTAATATAATTAAATATATTAAATTAATTATTTAATTAATTGATACTGTTTACAAT
12136316 TAAATACATAATTAAACATAA
66 TAAATACATAATTAAACATAA
12136337 TTAAATAATTTAATATAATTA
1 TTAAATAATTTAATATAATTA
12136358 TTTAGTTTAA
Statistics
Matches: 176, Mismatches: 11, Indels: 41
0.77 0.05 0.18
Matches are distributed among these distances:
84 59 0.34
85 9 0.05
86 9 0.05
87 1 0.01
89 1 0.01
90 3 0.02
91 2 0.01
93 14 0.08
94 13 0.07
96 3 0.02
97 3 0.02
98 1 0.01
100 1 0.01
101 2 0.01
102 1 0.01
103 54 0.31
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (86 bp):
TTAAATAATTTAATATAATTAAATATATTAAATTAATTATTTAATTAATTGATACTGTTTACAAT
TAAATACATAATTAAACATAA
Found at i:12136185 original size:35 final size:35
Alignment explanation
Indices: 12136071--12136714 Score: 181
Period size: 36 Copynumber: 17.8 Consensus size: 35
12136061 TAGTTTAATA
*
12136071 TAATTAA-ATAATTAAATATTTTAAATTAATTATT
1 TAATTAATATAATTAAATAATTTAAATTAATTATT
* * * * **
12136105 TAATTAAT-TGA-T-ACT-GTTTATAATTAAATACA
1 TAATTAATATAATTAAATAATTTA-AATTAATTATT
*
12136137 TAATTAAACATAATTAAATAATTT-AATATAATTATT
1 TAATT-AATATAATTAAATAATTTAAAT-TAATTATT
* **
12136173 TACTTAATATAATTAAATTTTTTAAATTAATTATT
1 TAATTAATATAATTAAATAATTTAAATTAATTATT
* * * **
12136208 TAATTAAT-TGA-T-ACT-ATTTACAATTAAATACA
1 TAATTAATATAATTAAATAATTTA-AATTAATTATT
*
12136240 TAATTAAACATAATTAAATAATTTAATAATTAAATCTATT
1 TAATT-AATATAATTAAATAATTT-A-AATT-AAT-TATT
* * * **
12136280 AAATTAAATATGTAATTAATTGATACTGTTTACAATTAAATACA
1 TAATT-AATA--TAATTAA---ATA--ATTTA-AATTAATTATT
*
12136324 TAATTAAACATAATTAAATAATTT-AATATAATTATT
1 TAATT-AATATAATTAAATAATTTAAAT-TAATTATT
*
12136360 TAGTTTAATATAATTAAATAA-TTAAA-T-ATT-TT
1 TA-ATTAATATAATTAAATAATTTAAATTAATTATT
* * * ** * *
12136392 AAATTAAT-TATTTAATTAATTGATACTGTTTATAATT
1 TAATTAATATAATTAAATAATT--TA-AATTAATTATT
*
12136429 AAATACATAATTAAACATAATTAAATAATTT-AATATAATTATT
1 TAAT---TAA-T-A---TAATTAAATAATTTAAAT-TAATTATT
* **
12136472 TACTTTAATATAATTAAATTTTTTAAATTAATTATT
1 TA-ATTAATATAATTAAATAATTTAAATTAATTATT
* ** * **
12136508 TAATTAAT-TGA-T-GCT-ATTTACAATTAAATACA
1 TAATTAATATAATTAAATAATTTA-AATTAATTATT
*
12136540 TAATTAAACATAATTAAATAATTT-AATATAATTATT
1 TAATT-AATATAATTAAATAATTTAAAT-TAATTATT
* *
12136576 TACTTTAATATAATTAAATAA-TTAAATCT-ATTAAAT
1 TA-ATTAATATAATTAAATAATTTAAAT-TAATT-ATT
* * * * * **
12136612 TAAAT-ATTTAATTAATTGGTACTGTTTATAATTAAATACA
1 TAATTAATATAATTAA---ATA--ATTTA-AATTAATTATT
*
12136652 TAATTAAACATAATTAAATAATTT-AATATAATTATT
1 TAATT-AATATAATTAAATAATTTAAAT-TAATTATT
*
12136688 TACTTTAATATAATTAAATAA-TTAAAT
1 TA-ATTAATATAATTAAATAATTTAAAT
12136715 CATTCAAATT
Statistics
Matches: 440, Mismatches: 100, Indels: 138
0.65 0.15 0.20
Matches are distributed among these distances:
30 9 0.02
31 18 0.04
32 47 0.11
33 14 0.03
34 29 0.07
35 61 0.14
36 117 0.27
37 34 0.08
38 5 0.01
39 8 0.02
40 23 0.05
41 9 0.02
42 23 0.05
43 7 0.02
44 12 0.03
45 5 0.01
46 16 0.04
47 3 0.01
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.45
Consensus pattern (35 bp):
TAATTAATATAATTAAATAATTTAAATTAATTATT
Found at i:12136315 original size:299 final size:300
Alignment explanation
Indices: 12135938--12136567 Score: 1145
Period size: 299 Copynumber: 2.1 Consensus size: 300
12135928 ACATAATTAA
* ** * * * * *
12135938 ATAATTTAACATAATTATTTACTTTAATATAATTAAATATTTTAAATTAATTATTTAATTACTTG
1 ATAATTAAACATAATTAAATAATTT-A-ATAATTAAATATATTAAATTAAATATGTAATTAATTG
12136003 ATACTGTTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTAGTTTA
64 ATACTGTTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTAGTTTA
12136068 ATATAATTAAATAATTAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAA
129 ATATAATTAAATAATTAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAA
12136133 TACATAATTAAACATAATTAAATAATTTAATATAATTATTTAC-TTAATATAATTAAATTTTTTA
194 TACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATTTTTTA
12136197 AATTAATTATTTAATTAATTGATACTATTTACAATTAAATAC
259 AATTAATTATTTAATTAATTGATACTATTTACAATTAAATAC
*
12136239 ATAATTAAACATAATTAAATAATTTAATAATTAAATCTATTAAATTAAATATGTAATTAATTGAT
1 ATAATTAAACATAATTAAATAATTTAATAATTAAATATATTAAATTAAATATGTAATTAATTGAT
12136304 ACTGTTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTAGTTTAAT
66 ACTGTTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTAGTTTAAT
12136369 ATAATTAAATAATTAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATA
131 ATAATTAAATAATTAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATA
12136434 CATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATTTTTTAAA
196 CATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATTTTTTAAA
*
12136499 TTAATTATTTAATTAATTGATGCTATTTACAATTAAATAC
261 TTAATTATTTAATTAATTGATACTATTTACAATTAAATAC
12136539 ATAATTAAACATAATTAAATAATTTAATA
1 ATAATTAAACATAATTAAATAATTTAATA
12136568 TAATTATTTA
Statistics
Matches: 318, Mismatches: 10, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
299 205 0.64
300 92 0.29
301 21 0.07
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (300 bp):
ATAATTAAACATAATTAAATAATTTAATAATTAAATATATTAAATTAAATATGTAATTAATTGAT
ACTGTTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTAGTTTAAT
ATAATTAAATAATTAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATA
CATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATTTTTTAAA
TTAATTATTTAATTAATTGATACTATTTACAATTAAATAC
Found at i:12136500 original size:216 final size:217
Alignment explanation
Indices: 12136253--12136755 Score: 658
Period size: 216 Copynumber: 2.3 Consensus size: 217
12136243 TTAAACATAA
* * * *
12136253 TTAA-ATAATTTAATAATTAAATCTATTAAATTAAATATGTAATTAATTGATACTGTTTACAATT
1 TTAATATAA-TTAATAATTATAT-T-TTAAATTAATTATTTAATTAATTGATACTGTTTATAATT
12136317 AAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTAGTTTAATATAATTAAATAAT
63 AAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTA--TTAATATAATT--ATAAT
* *
12136382 TAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATACATAATTAAACAT
124 TAAATATTTTAAATTAATTATTTAATTAATTGATACTATTTACAATTAAATACATAATTAAACAT
*
12136447 AATTAAATAATTTAATATAATTATTTACT
189 AATTAAATAATTTAATATAATTATTTAGT
* * *
12136476 TTAATATAATT-A-AA-T-T-TTTTAAATTAATTATTTAATTAATTGATGCTATTTACAATTAAA
1 TTAATATAATTAATAATTATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAA
12136536 TACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAA
66 TACATAATTAAACATAATTAAATAATTTAATATAATTATTTA--TTAATATAATT--ATAATTAA
* * * * * *
12136601 ATCTATTAAATTAAATATTTAATTAATTGGTACTGTTTATAATTAAATACATAATTAAACATAAT
127 ATATTTTAAATTAATTATTTAATTAATTGATACTATTTACAATTAAATACATAATTAAACATAAT
*
12136666 TAAATAATTTAATATAATTATTTACT
192 TAAATAATTTAATATAATTATTTAGT
* * *
12136692 TTAATATAATTAAATAATTAAATCATTCAAATTAAATATTTAATTAATTGATACTGTTTATAAT
1 TTAATATAATT-AATAATTATAT--TTTAAATTAATTATTTAATTAATTGATACTGTTTATAAT
12136756 AATATATATA
Statistics
Matches: 255, Mismatches: 16, Indels: 17
0.89 0.06 0.06
Matches are distributed among these distances:
216 200 0.78
217 1 0.00
218 2 0.01
219 2 0.01
220 2 0.01
221 2 0.01
222 2 0.01
223 6 0.02
224 38 0.15
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (217 bp):
TTAATATAATTAATAATTATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAA
TACATAATTAAACATAATTAAATAATTTAATATAATTATTTATTAATATAATTATAATTAAATAT
TTTAAATTAATTATTTAATTAATTGATACTATTTACAATTAAATACATAATTAAACATAATTAAA
TAATTTAATATAATTATTTAGT
Found at i:12136508 original size:515 final size:520
Alignment explanation
Indices: 12135744--12136751 Score: 1729
Period size: 515 Copynumber: 1.9 Consensus size: 520
12135734 CTTTAATATA
* * * * *
12135744 AATTAAATAATTAAATATTTTAAATTAATTATTTAATTAATTTAAAGTATTTACAATTAAATACA
1 AATTAAATAATTAAATATATTAAATTAAATATGTAATTAATTGAAACTATTTACAATTAAATACA
12135809 TAATTAAACATAATTAAATAATTAAATATAATTATTTAGTTTAATATAATTAAATAATTAAATAT
66 TAATTAAACATAATTAAATAATTAAATATAATTATTTAGTTTAATATAATTAAATAATTAAATAT
* *
12135874 TTTAAATTAATTTTTTAATTAATTGATACTGTTTATATTTAAATACATAATTAAACATAATTAAA
131 TTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAA
*
12135939 TAATTTAACATAATTATTTACTTTAATATAATTAAATATTTTAAATTAATTATTTAATTACTTGA
196 TAATTTAACATAATTATTTACTTTAATATAATTAAATATTTTAAATTAATTATTTAATTAATTGA
* *
12136004 TACTGTTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTAGTTTAA
261 TACTATTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAA
* *
12136069 TATAATTAAATAATTAAATATTTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAAT
326 TATAATTAAATAATTAAATATATTAAATTAAATATTTAATTAATTGATACTGTTTATAATTAAAT
12136134 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTAC-TTAATATAATTAAAT-TT-T-T
391 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATATTATAT
*
12136195 T-AAATTAATTATTTAATTAATTGATACTATTTACAATTAAATACATAATTAAACATAATTAAAT
456 TCAAATTAAATATTTAATTAATTGATACTATTTACAATTAAATACATAATTAAACATAATTAAAT
* * * *
12136259 AATTTAATAATTAAATCTATTAAATTAAATATGTAATTAATTGATACTGTTTACAATTAAATACA
1 AATTAAATAATTAAATATATTAAATTAAATATGTAATTAATTGAAACTATTTACAATTAAATACA
*
12136324 TAATTAAACATAATTAAATAATTTAATATAATTATTTAGTTTAATATAATTAAATAATTAAATAT
66 TAATTAAACATAATTAAATAATTAAATATAATTATTTAGTTTAATATAATTAAATAATTAAATAT
12136389 TTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAA
131 TTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAA
* *
12136454 TAATTTAATATAATTATTTACTTTAATATAATTAAATTTTTTAAATTAATTATTTAATTAATTGA
196 TAATTTAACATAATTATTTACTTTAATATAATTAAATATTTTAAATTAATTATTTAATTAATTGA
*
12136519 TGCTATTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAA
261 TACTATTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAA
* *
12136584 TATAATTAAATAATTAAATCTATTAAATTAAATATTTAATTAATTGGTACTGTTTATAATTAAAT
326 TATAATTAAATAATTAAATATATTAAATTAAATATTTAATTAATTGATACTGTTTATAATTAAAT
12136649 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAA
391 ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAAT-ATT--A
*
12136714 TCATTCAAATTAAATATTTAATTAATTGATACTGTTTA
453 T-ATTCAAATTAAATATTTAATTAATTGATACTATTTA
12136752 TAATAATATA
Statistics
Matches: 460, Mismatches: 24, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
515 410 0.89
516 15 0.03
518 2 0.00
521 1 0.00
523 2 0.00
524 30 0.07
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (520 bp):
AATTAAATAATTAAATATATTAAATTAAATATGTAATTAATTGAAACTATTTACAATTAAATACA
TAATTAAACATAATTAAATAATTAAATATAATTATTTAGTTTAATATAATTAAATAATTAAATAT
TTTAAATTAATTATTTAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAA
TAATTTAACATAATTATTTACTTTAATATAATTAAATATTTTAAATTAATTATTTAATTAATTGA
TACTATTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAA
TATAATTAAATAATTAAATATATTAAATTAAATATTTAATTAATTGATACTGTTTATAATTAAAT
ACATAATTAAACATAATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATATTATAT
TCAAATTAAATATTTAATTAATTGATACTATTTACAATTAAATACATAATTAAACATAATTAAAT
Found at i:12136626 original size:26 final size:26
Alignment explanation
Indices: 12136182--12136298 Score: 62
Period size: 26 Copynumber: 4.3 Consensus size: 26
12136172 TTACTTAATA
* * *
12136182 TAATTAAATTTTTTAAATTAATTATT
1 TAATTAAATCTATTAAATTAAATATT
**
12136208 TAATTAATTGATACTATTTACAATTAAATACA
1 TAATTAA---AT-CTA-TTA-AATTAAATATT
12136240 TAATTAAA-C-A-T-AATTAAATAATTT
1 TAATTAAATCTATTAAATTAAAT-A-TT
*
12136264 AATAATTAAATCTATTAAATTAAATATG
1 --TAATTAAATCTATTAAATTAAATATT
12136292 TAATTAA
1 TAATTAA
12136299 TTGATACTGT
Statistics
Matches: 69, Mismatches: 8, Indels: 28
0.66 0.08 0.27
Matches are distributed among these distances:
22 8 0.12
23 1 0.01
24 1 0.01
26 23 0.33
27 2 0.03
28 2 0.03
29 5 0.07
30 9 0.13
31 3 0.04
32 15 0.22
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (26 bp):
TAATTAAATCTATTAAATTAAATATT
Found at i:12141237 original size:41 final size:41
Alignment explanation
Indices: 12141080--12141439 Score: 381
Period size: 41 Copynumber: 8.8 Consensus size: 41
12141070 TTTAAATAAA
*
12141080 TTAGCGGCGCTT-ATGGGAAAGCGCCGCTAATG-CAC-ACCT
1 TTAGCGGCGCTTGA-GGGAAAGCGCCGCTAATGACCCGACCT
* *** *
12141119 TTAGCGACGCTT-ATTAAAAAAGCGCCGCTAATGACCTGACCT
1 TTAGCGGCGCTTGA--GGGAAAGCGCCGCTAATGACCCGACCT
* * *** *
12141161 TTAGCAGCGCTTTATATATAAGCGCCGCTAATGACCCGAACT
1 TTAGCGGCGCTTGAGGGA-AAGCGCCGCTAATGACCCGACCT
12141203 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCGACCTT
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCGACC-T
* * * **
12141245 TTAGTGGCGCTTTAGGGAAAGCGCCGCTAATGATCATACCT
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCGACCT
* * **
12141286 TTAGCGGCGCTTGAGGTAAAGCGCCGCTAATTACCTAACCT
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCGACCT
* *
12141327 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATTACCCTACCT
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCGACCT
*
12141368 TTAGCGGCGCATT-AGAGAAAGCGCCGCTAATGACCCGACCT
1 TTAGCGGCGC-TTGAGGGAAAGCGCCGCTAATGACCCGACCT
* **
12141409 TTAGCGGCGCTTG-TGTTAAGCGCCGCTAATG
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATG
12141440 CTTTACCTTT
Statistics
Matches: 273, Mismatches: 40, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
39 12 0.04
40 32 0.12
41 142 0.52
42 86 0.32
43 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (41 bp):
TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCGACCT
Found at i:12141357 original size:165 final size:162
Alignment explanation
Indices: 12141080--12141459 Score: 448
Period size: 165 Copynumber: 2.3 Consensus size: 162
12141070 TTTAAATAAA
* * *
12141080 TTAGCGGCGCTTATGGGAAAGCGCCGCTAATG-CACACCTTTAGCGACGCTTATTAAAAAAGCGC
1 TTAGCGGCGCTTA-GGGAAAGCGCCGCTAATGTCATACCTTTAGCGGCGCTTAGT--AAAAGCGC
* * * *
12141144 CGCTAATGACCTGACCTTTAGCAGCGCTTTATATATAAGCGCCGCTAATGACCCGAACTTTAGCG
63 CGCTAATGACCTAACCTTTAGCAGCGCTTGAGAGATAAGCGCCGCTAATGACCCGAACTTTAGCG
*
12141209 GCGC-TTGAGGGAAAGCGCCGCTAATGACCCGACCTT
128 GCGCATT-AGAGAAAGCGCCGCTAATGACCCGACC-T
*
12141245 TTAGTGGCGCTTTAGGGAAAGCGCCGCTAATGATCATACCTTTAGCGGCGCTTGAGGT-AAAGCG
1 TTAGCGGCGC-TTAGGGAAAGCGCCGCTAATG-TCATACCTTTAGCGGCGCTT-A-GTAAAAGCG
* * * * * *
12141309 CCGCTAATTACCTAACCTTTAGCGGCGCTTGAGGGA-AAGCGCCGCTAATTACCCTACCTTTAGC
62 CCGCTAATGACCTAACCTTTAGCAGCGCTTGAGAGATAAGCGCCGCTAATGACCCGAACTTTAGC
12141373 GGCGCATTAGAGAAAGCGCCGCTAATGACCCGACCT
127 GGCGCATTAGAGAAAGCGCCGCTAATGACCCGACCT
** * *
12141409 TTAGCGGCGCTT-GTGTTAAGCGCCGCTAATG-CTTTACCTTTTGCGGCGCTT
1 TTAGCGGCGCTTAG-GGAAAGCGCCGCTAATGTC-ATACCTTTAGCGGCGCTT
12141460 TGTTTCCAAA
Statistics
Matches: 187, Mismatches: 20, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
161 1 0.01
162 17 0.09
163 17 0.09
164 10 0.05
165 83 0.44
166 40 0.21
167 17 0.09
168 1 0.01
169 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (162 bp):
TTAGCGGCGCTTAGGGAAAGCGCCGCTAATGTCATACCTTTAGCGGCGCTTAGTAAAAGCGCCGC
TAATGACCTAACCTTTAGCAGCGCTTGAGAGATAAGCGCCGCTAATGACCCGAACTTTAGCGGCG
CATTAGAGAAAGCGCCGCTAATGACCCGACCT
Found at i:12148672 original size:18 final size:19
Alignment explanation
Indices: 12148635--12148672 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
12148625 AGGAGTCGTT
*
12148635 TTTATTTTGGTGACTTTAA
1 TTTATTTTGGTGAATTTAA
*
12148654 TTTATTTT-GTTAATTTAA
1 TTTATTTTGGTGAATTTAA
12148672 T
1 T
12148673 CATCTCAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.24, C:0.03, G:0.11, T:0.63
Consensus pattern (19 bp):
TTTATTTTGGTGAATTTAA
Found at i:12149759 original size:11 final size:11
Alignment explanation
Indices: 12149743--12149767 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
12149733 ACGTGGCGTA
12149743 AATGACATCAT
1 AATGACATCAT
12149754 AATGACATCAT
1 AATGACATCAT
12149765 AAT
1 AAT
12149768 CTAAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (11 bp):
AATGACATCAT
Found at i:12155002 original size:51 final size:51
Alignment explanation
Indices: 12154884--12155126 Score: 344
Period size: 51 Copynumber: 4.8 Consensus size: 51
12154874 GCTATAAACG
12154884 AAAGAGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCC-TTACGGATT
1 AAAG-GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
*
12154935 AAAGGTCCGATAACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * * *
12154986 AAAGGTCCAATGACTAAGTGTTATTGTGAGTAAATGAATTCTTTTCGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * *
12155037 AAAGGTCCGATGACTAAGTATCATCGTGAGTAAATGAATCCATGACGAATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * *
12155088 AAAGGTTCGATGACTCAGTGTCATCATGAGTATATGAAT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAAT
12155127 TTTTATACGG
Statistics
Matches: 170, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
50 36 0.21
51 134 0.79
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
Found at i:12160954 original size:27 final size:27
Alignment explanation
Indices: 12160916--12160970 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
12160906 TAAAGGAGAA
12160916 AGAAGATTTGAACGAGGGACCTCCTTG
1 AGAAGATTTGAACGAGGGACCTCCTTG
12160943 AGAAGATTTGAACGAGGGACCTCCTTG
1 AGAAGATTTGAACGAGGGACCTCCTTG
12160970 A
1 A
12160971 AAGCTTAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (27 bp):
AGAAGATTTGAACGAGGGACCTCCTTG
Found at i:12163214 original size:23 final size:23
Alignment explanation
Indices: 12163187--12163244 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
12163177 AAGCAGTACA
12163187 TTTCACCATTCAGTTCATCAACT
1 TTTCACCATTCAGTTCATCAACT
**
12163210 TTTCACTGTTCAGTTCATCAACT
1 TTTCACCATTCAGTTCATCAACT
* *
12163233 CTTCATCATTCA
1 TTTCACCATTCA
12163245 ACTCATCATT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.41
Consensus pattern (23 bp):
TTTCACCATTCAGTTCATCAACT
Found at i:12167620 original size:15 final size:15
Alignment explanation
Indices: 12167602--12167641 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
12167592 GGATTACTAT
12167602 TATGATGATGACATC
1 TATGATGATGACATC
* *
12167617 TATGATGATGATATT
1 TATGATGATGACATC
*
12167632 TATGAAGATG
1 TATGATGATG
12167642 GATATGATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (15 bp):
TATGATGATGACATC
Found at i:12168406 original size:148 final size:148
Alignment explanation
Indices: 12168138--12168433 Score: 556
Period size: 148 Copynumber: 2.0 Consensus size: 148
12168128 ACTATTTCAT
* * *
12168138 TGGTATCATAAACCAAAAGTTGTAGGACTATGTGATGAATACTATGGAGGGGAGGAGACGGCTGC
1 TGGTATCATAAACCAAAAGTCGCAGGACTATGTGATGAATACTATGGAAGGGAGGAGACGGCTGC
12168203 AGTACCACCAATACAAGGAAATTCGGTGATCAAATCATTTTTACTGAATGAGGTAATTGAGCAGC
66 AGTACCACCAATACAAGGAAATTCGGTGATCAAATCATTTTTACTGAATGAGGTAATTGAGCAGC
12168268 TATTAGATCACCACACAA
131 TATTAGATCACCACACAA
12168286 TGGTATCATAAACCAAAAGTCGCAGGACTATGTGATGAATACTATGGAAGGGAGGAGACGGCTGC
1 TGGTATCATAAACCAAAAGTCGCAGGACTATGTGATGAATACTATGGAAGGGAGGAGACGGCTGC
*
12168351 AGTACCACCAATACAAGGAAATTTGGTGATCAAATCATTTTTACTGAATGAGGTAATTGAGCAGC
66 AGTACCACCAATACAAGGAAATTCGGTGATCAAATCATTTTTACTGAATGAGGTAATTGAGCAGC
12168416 TATTAGATCACCACACAA
131 TATTAGATCACCACACAA
12168434 GGGTTTACAA
Statistics
Matches: 144, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
148 144 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (148 bp):
TGGTATCATAAACCAAAAGTCGCAGGACTATGTGATGAATACTATGGAAGGGAGGAGACGGCTGC
AGTACCACCAATACAAGGAAATTCGGTGATCAAATCATTTTTACTGAATGAGGTAATTGAGCAGC
TATTAGATCACCACACAA
Found at i:12171625 original size:26 final size:27
Alignment explanation
Indices: 12171596--12171646 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
12171586 TTTGCAGTTA
*
12171596 GCTTTGCTCCTT-TTTTTG-TTGCTTTT
1 GCTTTGC-CCTTCCTTTTGCTTGCTTTT
12171622 GCTTTGCCCTTCCTTTTGCTTGCTT
1 GCTTTGCCCTTCCTTTTGCTTGCTT
12171647 CTGTCTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 4 0.18
26 12 0.55
27 6 0.27
ACGTcount: A:0.00, C:0.25, G:0.16, T:0.59
Consensus pattern (27 bp):
GCTTTGCCCTTCCTTTTGCTTGCTTTT
Found at i:12198706 original size:24 final size:24
Alignment explanation
Indices: 12198648--12198697 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
12198638 GTTAATTTCA
*
12198648 AACTATGCATTGCGAGCTCTTGCG
1 AACTGTGCATTGCGAGCTCTTGCG
12198672 AACTGTGCATTGCGAGCTCTTGCG
1 AACTGTGCATTGCGAGCTCTTGCG
12198696 AA
1 AA
12198698 TTTTTCATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (24 bp):
AACTGTGCATTGCGAGCTCTTGCG
Found at i:12200108 original size:7 final size:7
Alignment explanation
Indices: 12200096--12200121 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
12200086 CTACAAATAA
12200096 AAGAATG
1 AAGAATG
12200103 AAGAATG
1 AAGAATG
12200110 AAGAATG
1 AAGAATG
12200117 AAGAA
1 AAGAA
12200122 AGCATTAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.27, T:0.12
Consensus pattern (7 bp):
AAGAATG
Found at i:12208629 original size:12 final size:12
Alignment explanation
Indices: 12208608--12208640 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
12208598 ATCAATAAGA
12208608 AGAA-GAAGAAG
1 AGAATGAAGAAG
*
12208619 GGAATGAAGAAG
1 AGAATGAAGAAG
12208631 AGAATGAAGA
1 AGAATGAAGA
12208641 GAAAGAACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 3 0.16
12 16 0.84
ACGTcount: A:0.58, C:0.00, G:0.36, T:0.06
Consensus pattern (12 bp):
AGAATGAAGAAG
Found at i:12229830 original size:6 final size:6
Alignment explanation
Indices: 12229819--12229848 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
12229809 TGACCAGAAG
*
12229819 AAGGAA AAGGAA AAGGAG AAGGAA AAGGAA
1 AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA
12229849 GAGAAAGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (6 bp):
AAGGAA
Found at i:12229861 original size:18 final size:18
Alignment explanation
Indices: 12229814--12229874 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 18
12229804 GAAGATGACC
*
12229814 AGAAGAAGGAAAAGGAAA
1 AGAAGAAGGAAAAGGAAG
*
12229832 AGGAGAAGGAAAAGGAAG
1 AGAAGAAGGAAAAGGAAG
*
12229850 AGAAAGAAGAAAAAGAAGAAG
1 AG-AAGAAGGAAAAG--GAAG
12229871 AGAA
1 AGAA
12229875 TGACATGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 18 0.50
19 10 0.28
20 2 0.06
21 6 0.17
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (18 bp):
AGAAGAAGGAAAAGGAAG
Found at i:12243219 original size:12 final size:13
Alignment explanation
Indices: 12243202--12243234 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
12243192 ACCAATTAAG
12243202 TTAGTTTTTA-TT
1 TTAGTTTTTAGTT
12243214 TTAGTTTTTAGTT
1 TTAGTTTTTAGTT
12243227 TTAGTTTT
1 TTAGTTTT
12243235 CATGCATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.73
Consensus pattern (13 bp):
TTAGTTTTTAGTT
Found at i:12243301 original size:34 final size:34
Alignment explanation
Indices: 12243257--12243326 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
12243247 GTAGCTGTAA
12243257 TTTAACTATCACCACATTTCCT-TTGTCATTGCAT
1 TTTAACTATCACCACATTT-CTATTGTCATTGCAT
* * *
12243291 TTTAATTATCACTACATTTGTATTGTCATTGCAT
1 TTTAACTATCACCACATTTCTATTGTCATTGCAT
12243325 TT
1 TT
12243327 CCATTCGTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 1 0.03
34 31 0.97
ACGTcount: A:0.24, C:0.20, G:0.07, T:0.49
Consensus pattern (34 bp):
TTTAACTATCACCACATTTCTATTGTCATTGCAT
Found at i:12243325 original size:17 final size:17
Alignment explanation
Indices: 12243279--12243326 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
12243269 CACATTTCCT
12243279 TTGTCATTGCATTTTAA
1 TTGTCATTGCATTTTAA
* * *
12243296 TTATCACTACATTTGT-A
1 TTGTCATTGCATTT-TAA
12243313 TTGTCATTGCATTT
1 TTGTCATTGCATTT
12243327 CCATTCGTCA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 23 0.96
18 1 0.04
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.52
Consensus pattern (17 bp):
TTGTCATTGCATTTTAA
Found at i:12262360 original size:13 final size:15
Alignment explanation
Indices: 12262332--12262364 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
12262322 CTCTTCATTC
12262332 TCTTCTTCCACTTTT
1 TCTTCTTCCACTTTT
12262347 TCTTCTT-C-CTTTT
1 TCTTCTTCCACTTTT
12262360 TCTTC
1 TCTTC
12262365 AACAGGTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 1 0.06
15 7 0.39
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.64
Consensus pattern (15 bp):
TCTTCTTCCACTTTT
Found at i:12272517 original size:9 final size:9
Alignment explanation
Indices: 12272493--12272525 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
12272483 TAAAAATAAA
12272493 TATTTT-TT
1 TATTTTATT
*
12272501 TATGTTATT
1 TATTTTATT
12272510 TATTTTATT
1 TATTTTATT
12272519 TATTTTA
1 TATTTTA
12272526 AAAATTGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (9 bp):
TATTTTATT
Found at i:12273221 original size:26 final size:26
Alignment explanation
Indices: 12273171--12273221 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12273161 TAAGAAATTT
*
12273171 TTTTCTAATTTATTTAATTTATTAAC
1 TTTTCTAATTTATTTAAATTATTAAC
*
12273197 TTTT-TAATTTATTTTAAATTGTTAA
1 TTTTCTAATTTA-TTTAAATTATTAA
12273222 TATTTTAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (26 bp):
TTTTCTAATTTATTTAAATTATTAAC
Found at i:12275911 original size:15 final size:15
Alignment explanation
Indices: 12275891--12275923 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
12275881 AGATCTCCCA
12275891 ATCTTCATA-ATACTC
1 ATCTTCATAGATA-TC
12275906 ATCTTCATAGATATC
1 ATCTTCATAGATATC
12275921 ATC
1 ATC
12275924 ATCGTAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 14 0.82
16 3 0.18
ACGTcount: A:0.33, C:0.24, G:0.03, T:0.39
Consensus pattern (15 bp):
ATCTTCATAGATATC
Found at i:12278641 original size:56 final size:56
Alignment explanation
Indices: 12278550--12278760 Score: 257
Period size: 56 Copynumber: 3.8 Consensus size: 56
12278540 TAGTCGTACG
* *
12278550 CTCTAA-CTGAGACGTAAGCAAAA-CATAGCTCTACCCGAGCTATACATGGCATTGCA
1 CTCTAATC-GAGACGTAAG-AAAATCATAGCTCTACCCAAGCTATACATGGCATTACA
* *
12278606 CTCTAATCGAGACGTAAGAAAATCATAGCTTTACCCAAGCTATACATAGCATTACA
1 CTCTAATCGAGACGTAAGAAAATCATAGCTCTACCCAAGCTATACATGGCATTACA
* * * * * * *
12278662 CTTTAAGT-GAGACGTAAGCAAATCATAGCTCTACTCGAGTTGTACATGGCATTACG
1 CTCTAA-TCGAGACGTAAGAAAATCATAGCTCTACCCAAGCTATACATGGCATTACA
* *
12278718 CTCTAACCGAGACGTAAGTAAATCATAGCTCTACCCAAGCTAT
1 CTCTAATCGAGACGTAAGAAAATCATAGCTCTACCCAAGCTAT
12278761 CCTTCAATGA
Statistics
Matches: 131, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
55 4 0.03
56 125 0.95
57 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (56 bp):
CTCTAATCGAGACGTAAGAAAATCATAGCTCTACCCAAGCTATACATGGCATTACA
Found at i:12278735 original size:112 final size:112
Alignment explanation
Indices: 12278557--12278760 Score: 327
Period size: 112 Copynumber: 1.8 Consensus size: 112
12278547 ACGCTCTAAC
* *
12278557 TGAGACGTAAGCAAAACATAGCTCTACCCGAGCTATACATGGCATTGCACTCTAATCGAGACGTA
1 TGAGACGTAAGCAAAACATAGCTCTACCCGAGCTATACATGGCATTACACTCTAACCGAGACGTA
*
12278622 AGAAAATCATAGCTTTACCCAAGCTATACATAGCATTACACTTTAAG
66 AGAAAATCATAGCTCTACCCAAGCTATACATAGCATTACACTTTAAG
* * * * *
12278669 TGAGACGTAAGCAAATCATAGCTCTACTCGAGTTGTACATGGCATTACGCTCTAACCGAGACGTA
1 TGAGACGTAAGCAAAACATAGCTCTACCCGAGCTATACATGGCATTACACTCTAACCGAGACGTA
*
12278734 AGTAAATCATAGCTCTACCCAAGCTAT
66 AGAAAATCATAGCTCTACCCAAGCTAT
12278761 CCTTCAATGA
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
112 83 1.00
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (112 bp):
TGAGACGTAAGCAAAACATAGCTCTACCCGAGCTATACATGGCATTACACTCTAACCGAGACGTA
AGAAAATCATAGCTCTACCCAAGCTATACATAGCATTACACTTTAAG
Found at i:12284286 original size:31 final size:31
Alignment explanation
Indices: 12284228--12284285 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
12284218 TTTTTGGTCC
12284228 AATTTGGTACTCAAACTTGACACTTTTTCCT
1 AATTTGGTACTCAAACTTGACACTTTTTCCT
*
12284259 AATTTGGTACTTAAACTTGAC-CTTTTT
1 AATTTGGTACTCAAACTTGACACTTTTT
12284286 TTTACAGTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 6 0.23
31 20 0.77
ACGTcount: A:0.26, C:0.19, G:0.10, T:0.45
Consensus pattern (31 bp):
AATTTGGTACTCAAACTTGACACTTTTTCCT
Found at i:12284297 original size:31 final size:31
Alignment explanation
Indices: 12284231--12284307 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
12284221 TTGGTCCAAT
* *
12284231 TTGGTACTCAAACTTGACACTTTTTCCTAAT
1 TTGGTACTTAAACTTGACACTTTTTCCTAAG
**
12284262 TTGGTACTTAAACTTGAC-CTTTTTTTTACAG
1 TTGGTACTTAAACTTGACACTTTTTCCTA-AG
*
12284293 TTGGTATTTAAACTT
1 TTGGTACTTAAACTT
12284308 TTGAGATCCA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 8 0.20
31 32 0.80
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.47
Consensus pattern (31 bp):
TTGGTACTTAAACTTGACACTTTTTCCTAAG
Found at i:12284685 original size:58 final size:59
Alignment explanation
Indices: 12284529--12284699 Score: 195
Period size: 58 Copynumber: 2.9 Consensus size: 59
12284519 TTGAATTTGG
* * *
12284529 AAAAAAAACTTAGGTACCAAATTAGGAAAAAA-ATACAAAGTTCAGGTACCAAATTGGGTC
1 AAAAAAAATTTAGATACCAAATTAGGAAAAAATAT-C-AAGTTCAGGTACCAAATTAGGTC
* * * * * *
12284589 CAAAAAAGTTTAGGA-ACCAAACTAGGAATAAGTGTCAAGTTCAGGTACCAAATTAGGT-
1 AAAAAAAATTTA-GATACCAAATTAGGAAAAAATATCAAGTTCAGGTACCAAATTAGGTC
* *
12284647 AAAAAAAATTTAGATACCAAATTAGGAAAAAATATCAAGTTAAGATACCAAAT
1 AAAAAAAATTTAGATACCAAATTAGGAAAAAATATCAAGTTCAGGTACCAAAT
12284700 GTTATATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
57 2 0.02
58 42 0.46
59 21 0.23
60 24 0.26
61 2 0.02
ACGTcount: A:0.50, C:0.12, G:0.16, T:0.22
Consensus pattern (59 bp):
AAAAAAAATTTAGATACCAAATTAGGAAAAAATATCAAGTTCAGGTACCAAATTAGGTC
Found at i:12284696 original size:31 final size:31
Alignment explanation
Indices: 12284604--12284699 Score: 92
Period size: 31 Copynumber: 3.2 Consensus size: 31
12284594 AAGTTTAGGA
* * * * * *
12284604 ACCAAACTAGGAATAAGTGTCAAGTTCAGGT
1 ACCAAATTAGGAAAAAATATCAAGTTAAGAT
* *
12284635 ACCAAATTAGGTAAAAA-A--AA-TTTAGAT
1 ACCAAATTAGGAAAAAATATCAAGTTAAGAT
12284662 ACCAAATTAGGAAAAAATATCAAGTTAAGAT
1 ACCAAATTAGGAAAAAATATCAAGTTAAGAT
12284693 ACCAAAT
1 ACCAAAT
12284700 GTTATATTAA
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
27 21 0.40
28 3 0.06
30 2 0.04
31 26 0.50
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.23
Consensus pattern (31 bp):
ACCAAATTAGGAAAAAATATCAAGTTAAGAT
Found at i:12285694 original size:212 final size:212
Alignment explanation
Indices: 12285327--12285758 Score: 846
Period size: 212 Copynumber: 2.0 Consensus size: 212
12285317 ATCACTTAGG
12285327 ATTGTTTAATTGATATTTCTAAGTACCTTGTAGTACTTAATGATCTTTATTTTTTTAACTCTTTA
1 ATTGTTTAATTGATATTTCTAAGTACCTTGTAGTACTTAATGATCTTTATTTTTTTAACTCTTTA
12285392 GTTATATACTTCAATAGATTTGTTGATTTTTTTATGAAAATTTATTTTTATTTGTTGGTTCTTGC
66 GTTATATACTTCAATAGATTTGTTGATTTTTTTATGAAAATTTATTTTTATTTGTTGGTTCTTGC
*
12285457 TGATATTTGATTATGGTAGAATTGTGGTTGTAGGTGGTATTTTGGTTATGATTTATGTTTGGTTA
131 TGATATTTGATTATGGTAGAATTGTGGTTGTAGGTGGCATTTTGGTTATGATTTATGTTTGGTTA
12285522 GTAGTTTATACTAGGTT
196 GTAGTTTATACTAGGTT
12285539 ATTGTTTAATTGATATTTCTAAGTACCTTGTAGTACTTAATGATCTTTATTTTTTTAACTCTTTA
1 ATTGTTTAATTGATATTTCTAAGTACCTTGTAGTACTTAATGATCTTTATTTTTTTAACTCTTTA
12285604 GTTATATACTTCAATAGATTTGTTGATTTTTTTATGAAAATTTATTTTTATTTGTTGGTTCTTGC
66 GTTATATACTTCAATAGATTTGTTGATTTTTTTATGAAAATTTATTTTTATTTGTTGGTTCTTGC
12285669 TGATATTTGATTATGGTAGAATTGTGGTTGTAGGTGGCATTTTGGTTATGATTTATGTTTGGTTA
131 TGATATTTGATTATGGTAGAATTGTGGTTGTAGGTGGCATTTTGGTTATGATTTATGTTTGGTTA
12285734 GTAGTTTATACTAGGTT
196 GTAGTTTATACTAGGTT
*
12285751 ATGGTTTA
1 ATTGTTTA
12285759 TTAGGATTTT
Statistics
Matches: 218, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
212 218 1.00
ACGTcount: A:0.23, C:0.06, G:0.18, T:0.53
Consensus pattern (212 bp):
ATTGTTTAATTGATATTTCTAAGTACCTTGTAGTACTTAATGATCTTTATTTTTTTAACTCTTTA
GTTATATACTTCAATAGATTTGTTGATTTTTTTATGAAAATTTATTTTTATTTGTTGGTTCTTGC
TGATATTTGATTATGGTAGAATTGTGGTTGTAGGTGGCATTTTGGTTATGATTTATGTTTGGTTA
GTAGTTTATACTAGGTT
Found at i:12287607 original size:17 final size:17
Alignment explanation
Indices: 12287582--12287652 Score: 79
Period size: 17 Copynumber: 4.2 Consensus size: 17
12287572 AATAAGTTTG
*
12287582 AATTTATTTTAAATTCA
1 AATTTATTTTAAATTTA
* * * *
12287599 AATTCATTTTGAGTTTG
1 AATTTATTTTAAATTTA
*
12287616 AATTTACTTTAAATTTA
1 AATTTATTTTAAATTTA
*
12287633 AATTTATTTTAAATTAA
1 AATTTATTTTAAATTTA
12287650 AAT
1 AAT
12287653 AAAATTAAAA
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.52
Consensus pattern (17 bp):
AATTTATTTTAAATTTA
Found at i:12287616 original size:34 final size:34
Alignment explanation
Indices: 12287576--12287642 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
12287566 TTTTTAAATA
*
12287576 AGTTTGAATTTATTTTAAATTCAAATTCATTTTG
1 AGTTTGAATTTACTTTAAATTCAAATTCATTTTG
* *
12287610 AGTTTGAATTTACTTTAAATTTAAATTTATTTT
1 AGTTTGAATTTACTTTAAATTCAAATTCATTTT
12287643 AAATTAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.55
Consensus pattern (34 bp):
AGTTTGAATTTACTTTAAATTCAAATTCATTTTG
Found at i:12287682 original size:19 final size:18
Alignment explanation
Indices: 12287649--12287686 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
12287639 TTTTAAATTA
12287649 AAATAAAATTAAAAGTCC
1 AAATAAAATTAAAAGTCC
*
12287667 AAATACAAATTCAAAGTCC
1 AAATA-AAATTAAAAGTCC
12287686 A
1 A
12287687 GACCCAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.58, C:0.16, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAATTAAAAGTCC
Found at i:12287759 original size:26 final size:26
Alignment explanation
Indices: 12287726--12287777 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12287716 AGCCCAGTTA
12287726 CAAACAGGCCAAAATAGCCCAAACAC
1 CAAACAGGCCAAAATAGCCCAAACAC
* *
12287752 CAAACAGGCCCAAATGGCCCAAACAC
1 CAAACAGGCCAAAATAGCCCAAACAC
12287778 TACACCTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.46, C:0.37, G:0.13, T:0.04
Consensus pattern (26 bp):
CAAACAGGCCAAAATAGCCCAAACAC
Found at i:12288350 original size:3 final size:3
Alignment explanation
Indices: 12288342--12288419 Score: 102
Period size: 3 Copynumber: 25.3 Consensus size: 3
12288332 AATAACGTTG
12288342 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
* * * *
12288388 TTA ATA ACA GTA ATA ATA ATA CTTA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA A
12288420 AAAAAAGGAA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
3 60 0.92
4 5 0.08
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:12289363 original size:30 final size:29
Alignment explanation
Indices: 12289314--12289668 Score: 256
Period size: 30 Copynumber: 12.0 Consensus size: 29
12289304 GAAGGTCCCT
* * *
12289314 AAACTGTCTAAAAAATACATTTTAAACCTC
1 AAACTTTCCAAAAATTACATTTT-AACCTC
* * *
12289344 AAACTTTCCAATAATTACATTTTGACCCC
1 AAACTTTCCAAAAATTACATTTTAACCTC
** * *
12289373 TAAACTTTTTAAAAATTATATTTTAACCCC
1 -AAACTTTCCAAAAATTACATTTTAACCTC
* * *
12289403 TAAACTTTTCAAAAATTACATTTTTACCCTT
1 -AAACTTTCCAAAAATTACA-TTTTAACCTC
* *
12289434 AAACTTTTCAAAAATTACATTTTTTGACCTC
1 AAACTTTCCAAAAATTACA--TTTTAACCTC
* *
12289465 AAACTTTCCAAAAATCACACTTTT-ACCCC
1 AAACTTTCCAAAAATTACA-TTTTAACCTC
12289494 TAAAC-TTCCAAAAATTACATTTTTAACC-C
1 -AAACTTTCCAAAAATTACA-TTTTAACCTC
* *
12289523 TAAATTTTCTAAAAATTACATTTTAACCT-
1 -AAACTTTCCAAAAATTACATTTTAACCTC
* *
12289552 GAACTTTCCAAAAATTACCATTTT-ACCTT
1 AAACTTTCCAAAAATTA-CATTTTAACCTC
* * *
12289581 AAA-TTTCTAAAAATTACGTTTTTGACCTC
1 AAACTTTCCAAAAATTAC-ATTTTAACCTC
* * *
12289610 GAACTTTCTAAAAATTACCATTTTATCCTC
1 AAACTTTCCAAAAATTA-CATTTTAACCTC
* * * *
12289640 GAA-TGTCCAAAAATTCCACTTTTGACCTC
1 AAACTTTCCAAAAATTACA-TTTTAACCTC
12289669 GCACCTCTAA
Statistics
Matches: 268, Mismatches: 43, Indels: 29
0.79 0.13 0.09
Matches are distributed among these distances:
27 1 0.00
28 36 0.13
29 70 0.26
30 128 0.48
31 33 0.12
ACGTcount: A:0.37, C:0.22, G:0.03, T:0.38
Consensus pattern (29 bp):
AAACTTTCCAAAAATTACATTTTAACCTC
Found at i:12289408 original size:60 final size:58
Alignment explanation
Indices: 12289310--12289634 Score: 284
Period size: 60 Copynumber: 5.5 Consensus size: 58
12289300 CCCAGAAGGT
* * * * *
12289310 CCCTAAACTGTCTAAAAAATACATTTTAAACCTCAAACTTTCCAATAATTACATTTTGAC
1 CCCTAAACTTTCCAAAAATTACATTTTAACCCT-AAACTTTCCAAAAATTACATTTT-AC
** * *
12289370 CCCTAAACTTTTTAAAAATTATATTTTAACCCCTAAACTTTTCAAAAATTACATTTTTAC
1 CCCTAAACTTTCCAAAAATTACATTTTAA-CCCTAAACTTTCCAAAAATTACA-TTTTAC
* * * *
12289430 CCTTAAACTTTTCAAAAATTACATTTTTTGA-CCTCAAACTTTCCAAAAATCACACTTTTAC
1 CCCTAAACTTTCCAAAAATTACA--TTTTAACCCT-AAACTTTCCAAAAATTACA-TTTTAC
* *
12289491 CCCTAAAC-TTCCAAAAATTACATTTTTAACCCTAAATTTTCTAAAAATTACATTTTA-
1 CCCTAAACTTTCCAAAAATTACA-TTTTAACCCTAAACTTTCCAAAAATTACATTTTAC
* * * * *
12289548 ACCTGAACTTTCCAAAAATTACCATTTT-ACCTTAAA-TTTCTAAAAATTACGTTTTTGAC
1 CCCTAAACTTTCCAAAAATTA-CATTTTAACCCTAAACTTTCCAAAAATTAC-ATTTT-AC
* * *
12289607 CTC-GAACTTTCTAAAAATTACCATTTTA
1 CCCTAAACTTTCCAAAAATTA-CATTTTA
12289635 TCCTCGAATG
Statistics
Matches: 226, Mismatches: 27, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
56 14 0.06
57 17 0.08
58 45 0.20
59 25 0.11
60 83 0.37
61 37 0.16
62 5 0.02
ACGTcount: A:0.38, C:0.22, G:0.02, T:0.38
Consensus pattern (58 bp):
CCCTAAACTTTCCAAAAATTACATTTTAACCCTAAACTTTCCAAAAATTACATTTTAC
Found at i:12289697 original size:57 final size:58
Alignment explanation
Indices: 12289533--12289713 Score: 208
Period size: 57 Copynumber: 3.2 Consensus size: 58
12289523 TAAATTTTCT
* * * ** * *
12289533 AAAAATTACA-TTTTAACCT-GAACTTTCCAAAAATTACCATTTTACCTTAAATTTCT
1 AAAAATTACACTTTTGACCTCGAACTCTCTAAAAATTACCATTTTACCTCGAATGTCC
** *
12289589 AAAAATTACGTTTTTGACCTCGAACTTTCTAAAAATTACCATTTTATCCTCGAATGTCC
1 AAAAATTACACTTTTGACCTCGAACTCTCTAAAAATTACCATTTTA-CCTCGAATGTCC
* *
12289648 AAAAATTCCACTTTTGACCTCGCAC-CTCT-AAAATTACCATTTTACCCTCGAATGTCC
1 AAAAATTACACTTTTGACCTCGAACTCTCTAAAAATTACCATTTTA-CCTCGAATGTCC
12289705 AAAAATTAC
1 AAAAATTAC
12289714 CGTTTTACCC
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
56 9 0.08
57 43 0.40
58 27 0.25
59 29 0.27
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (58 bp):
AAAAATTACACTTTTGACCTCGAACTCTCTAAAAATTACCATTTTACCTCGAATGTCC
Found at i:12289723 original size:29 final size:28
Alignment explanation
Indices: 12289442--12289722 Score: 164
Period size: 29 Copynumber: 9.7 Consensus size: 28
12289432 TTAAACTTTT
*
12289442 CAAAAATTA-CATTTTTTGACCTCAAACTTTC
1 CAAAAATTACCA--TTTT-ACCTCGAA-TTTC
* * * *
12289473 CAAAAATCA-CACTTTTACCCCTAAACTTC
1 CAAAAATTACCA-TTTTACCTC-GAATTTC
*
12289502 CAAAAATTA-CATTTTTAACC-CTAAATTTTC
1 CAAAAATTACCA-TTTT-ACCTC-GAA-TTTC
*
12289532 TAAAAATTA-CATTTTAACCT-GAACTTTC
1 CAAAAATTACCATTTT-ACCTCGAA-TTTC
**
12289560 CAAAAATTACCATTTTACCTTAAATTTC
1 CAAAAATTACCATTTTACCTCGAATTTC
* **
12289588 TAAAAATTACGTTTTTGACCTCGAACTTTC
1 CAAAAATTACCATTTT-ACCTCGAA-TTTC
* *
12289618 TAAAAATTACCATTTTATCCTCGAATGTC
1 CAAAAATTACCATTTTA-CCTCGAATTTC
* **
12289647 CAAAAATT-CCACTTTTGACCTCGCACCT-
1 CAAAAATTACCA-TTTT-ACCTCGAATTTC
* *
12289675 CTAAAATTACCATTTTACCCTCGAATGTC
1 CAAAAATTACCATTTTA-CCTCGAATTTC
*
12289704 CAAAAATTACCGTTTTACC
1 CAAAAATTACCATTTTACC
12289723 CCCGATCATC
Statistics
Matches: 206, Mismatches: 30, Indels: 31
0.77 0.11 0.12
Matches are distributed among these distances:
27 1 0.00
28 58 0.28
29 88 0.43
30 49 0.24
31 10 0.05
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.36
Consensus pattern (28 bp):
CAAAAATTACCATTTTACCTCGAATTTC
Found at i:12289738 original size:29 final size:29
Alignment explanation
Indices: 12289677--12289755 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
12289667 TCGCACCTCT
* * *
12289677 AAAATTACCATTTTACCCTCGAATGTCCA
1 AAAATTACCGTTTTACCCCCGAATATCCA
*
12289706 AAAATTACCGTTTTACCCCCG-ATCATCCC
1 AAAATTACCGTTTTACCCCCGAAT-ATCCA
* *
12289735 AAAATTATCGTTTTACACCCG
1 AAAATTACCGTTTTACCCCCG
12289756 GGCATCCAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 2 0.05
29 41 0.95
ACGTcount: A:0.32, C:0.30, G:0.08, T:0.30
Consensus pattern (29 bp):
AAAATTACCGTTTTACCCCCGAATATCCA
Found at i:12289761 original size:29 final size:29
Alignment explanation
Indices: 12289706--12289762 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
12289696 CGAATGTCCA
* *
12289706 AAAATTACCGTTTTACCCCCGATCATCCC
1 AAAATTACCGTTTTACACCCGAGCATCCC
* *
12289735 AAAATTATCGTTTTACACCCGGGCATCC
1 AAAATTACCGTTTTACACCCGAGCATCC
12289763 AGAAATCGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.28, C:0.33, G:0.11, T:0.28
Consensus pattern (29 bp):
AAAATTACCGTTTTACACCCGAGCATCCC
Found at i:12298940 original size:161 final size:161
Alignment explanation
Indices: 12298753--12299097 Score: 503
Period size: 161 Copynumber: 2.1 Consensus size: 161
12298743 AAATGGTTAG
* * * * *
12298753 CTTCCTAATGAGATACTGAAAAGTGGACCAAATTCATCTTCCTGATGAGATACAAAGACGTGGAT
1 CTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATAAGATACAAAGAAGCGGAT
* * *
12298818 TGAAACAAGTAATGCGGTCATCTTCCTGATGAGATATTGAGAAGAAGACCAAATCAAT-AAAGCC
66 TGAAACAAGTAATGCAGTCATCTTCCTGATGAAATACTGAGAAGAAGACCAAATCAATCAAA-CC
* *
12298882 AAGCTCCAAGTGAGCAAATCTTCGAACCCCAA
130 AAGCTCAAAGTAAGCAAATCTTCGAACCCCAA
* *
12298914 CTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCGGAT
1 CTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATAAGATACAAAGAAGCGGAT
* ** * *
12298979 TGAAACAAGTGATGCAGTTGTCTTCCTGATGAAATACTGAGAAGTAGACCAAATTAATCAAACCA
66 TGAAACAAGTAATGCAGTCATCTTCCTGATGAAATACTGAGAAGAAGACCAAATCAATCAAACCA
* *
12299044 GGCTCAAAGTAAGCAAATCTTCGAACCCCAG
131 AGCTCAAAGTAAGCAAATCTTCGAACCCCAA
12299075 CTTCCTGATGAGATACTGAGAAG
1 CTTCCTGATGAGATACTGAGAAG
12299098 CAGGTCGAAG
Statistics
Matches: 164, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
161 161 0.98
162 3 0.02
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (161 bp):
CTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATAAGATACAAAGAAGCGGAT
TGAAACAAGTAATGCAGTCATCTTCCTGATGAAATACTGAGAAGAAGACCAAATCAATCAAACCA
AGCTCAAAGTAAGCAAATCTTCGAACCCCAA
Found at i:12299298 original size:209 final size:209
Alignment explanation
Indices: 12298914--12299451 Score: 729
Period size: 209 Copynumber: 2.6 Consensus size: 209
12298904 CGAACCCCAA
* * * * *
12298914 CTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCGGAT
1 CTTCCTGATGAGGTACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGTGGAT
* ** * * *
12298979 TGAAACAAGTGATGCAGTTGTCTTCCTGATGAAATACTGAGAAGTAGACCAAATTAATCAAACCA
66 TGAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAATCAAACCA
12299044 GGCTCAAAGTAAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
131 GGCTCAAAGTAAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
* * *
12299109 AATAAAATGGTTAG
196 AATAAAACGGTCAC
* * *
12299123 CTTCCTAATGAGGTACAGAGAAGCGGACCAAATTCATCTTCCTGATGAGATACAAAGAAGTGGAT
1 CTTCCTGATGAGGTACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGTGGAT
* * **
12299188 TGAAACAAGTGATGCGGTCATCTTCCTGATGAGGTACTGAGAAGAAGACCAAATCAATGAAGTCA
66 TGAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAATCAAACCA
* * **
12299253 GGCTCAAAGTGAGCGAATCTTCGAACCCCAGCTTCCTTTTGAGATACTGAGAAGCAGGTCGAAGC
131 GGCTCAAAGTAAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
*
12299318 AATAAAGCGGTCAC
196 AATAAAACGGTCAC
* * * * * *
12299332 CTTCCTGATGGGGTACAGAGAAGTGAACCAGATCCGTCTTCTTGATGAGACACAAAGAAGTGGAT
1 CTTCCTGATGAGGTACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGTGGAT
** * *
12299397 CAAAACAAGT-ATGCGGTCATCTTCCTGATAAGATACTAAGAA-ATAGACCAAATCA
66 TGAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGA-AGACCAAATCA
12299452 GTAACACCAA
Statistics
Matches: 288, Mismatches: 40, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
207 1 0.00
208 40 0.14
209 247 0.86
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.22
Consensus pattern (209 bp):
CTTCCTGATGAGGTACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAAAGAAGTGGAT
TGAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAATCAAACCA
GGCTCAAAGTAAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
AATAAAACGGTCAC
Found at i:12299298 original size:370 final size:370
Alignment explanation
Indices: 12298629--12299306 Score: 1086
Period size: 370 Copynumber: 1.8 Consensus size: 370
12298619 AATGCGGTCA
* * * * * *
12298629 TCTTCCCGATGAGATACTGAGAAAAAGACCAAATCAATGAAGCCAAGCTCCAAGTGAGTAAATCT
1 TCTTCCCGATGAAATACTGAGAAAAAGACCAAATCAATCAAACCAAGCTCAAAGTAAGCAAATCT
* *
12298694 TCGAACCTCAGCTTCGTGATGAGATACTAAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCT
66 TCGAACCCCAGCTTCCTGATGAGATACTAAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCT
* * *
12298759 AATGAGATACTGAAAAGTGGACCAAATTCATCTTCCTGATGAGATACAAAGACGTGGATTGAAAC
131 AATGAGATACAGAAAAGCGGACCAAATTCATCTTCCTGATGAGATACAAAGAAGTGGATTGAAAC
* *
12298824 AAGTAATGCGGTCATCTTCCTGATGAGATATTGAGAAGAAGACCAAATCAATAAAGCCAAGCTCC
196 AAGTAATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAATAAAGCCAAGCTCA
12298889 AAGTGAGCAAATCTTCGAACCCCAACTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTT
261 AAGTGAGCAAATCTTCGAACCCCAACTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTT
12298954 CCTGATAAGATACAGAGAAGCGGATTGAAACAAGTGATGCAGTTG
326 CCTGATAAGATACAGAGAAGCGGATTGAAACAAGTGATGCAGTTG
* ** * *
12298999 TCTTCCTGATGAAATACTGAGAAGTAGACCAAATTAATCAAACCAGGCTCAAAGTAAGCAAATCT
1 TCTTCCCGATGAAATACTGAGAAAAAGACCAAATCAATCAAACCAAGCTCAAAGTAAGCAAATCT
*
12299064 TCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCT
66 TCGAACCCCAGCTTCCTGATGAGATACTAAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCT
* *
12299129 AATGAGGTACAGAGAAGCGGACCAAATTCATCTTCCTGATGAGATACAAAGAAGTGGATTGAAAC
131 AATGAGATACAGAAAAGCGGACCAAATTCATCTTCCTGATGAGATACAAAGAAGTGGATTGAAAC
* * * * *
12299194 AAGTGATGCGGTCATCTTCCTGATGAGGTACTGAGAAGAAGACCAAATCAATGAAGTCAGGCTCA
196 AAGTAATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAATAAAGCCAAGCTCA
* * **
12299259 AAGTGAGCGAATCTTCGAACCCCAGCTTCCTTTTGAGATACTGAGAAG
261 AAGTGAGCAAATCTTCGAACCCCAACTTCCTGATGAGATACTGAGAAG
12299307 CAGGTCGAAG
Statistics
Matches: 278, Mismatches: 30, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
370 278 1.00
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.22
Consensus pattern (370 bp):
TCTTCCCGATGAAATACTGAGAAAAAGACCAAATCAATCAAACCAAGCTCAAAGTAAGCAAATCT
TCGAACCCCAGCTTCCTGATGAGATACTAAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCT
AATGAGATACAGAAAAGCGGACCAAATTCATCTTCCTGATGAGATACAAAGAAGTGGATTGAAAC
AAGTAATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAATAAAGCCAAGCTCA
AAGTGAGCAAATCTTCGAACCCCAACTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTT
CCTGATAAGATACAGAGAAGCGGATTGAAACAAGTGATGCAGTTG
Found at i:12299833 original size:34 final size:34
Alignment explanation
Indices: 12299789--12299855 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
12299779 TTTTTAAATA
*
12299789 AGTTTAAATTTATTTTAAATTCAAATTCATTTTG
1 AGTTTAAATTTACTTTAAATTCAAATTCATTTTG
* * * *
12299823 AGTTTGAATTTGCTTTAAATTTAAATTTATTTT
1 AGTTTAAATTTACTTTAAATTCAAATTCATTTT
12299856 AAATTAAACT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.55
Consensus pattern (34 bp):
AGTTTAAATTTACTTTAAATTCAAATTCATTTTG
Found at i:12299979 original size:26 final size:26
Alignment explanation
Indices: 12299939--12299989 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12299929 AGCCCAGTTA
*
12299939 CAAATACGCCTAAATAGCCCAAACAC
1 CAAATACGCCCAAATAGCCCAAACAC
* *
12299965 CAAATAGGCCCAAATGGCCCAAACA
1 CAAATACGCCCAAATAGCCCAAACA
12299990 GTACACCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.45, C:0.33, G:0.12, T:0.10
Consensus pattern (26 bp):
CAAATACGCCCAAATAGCCCAAACAC
Found at i:12301563 original size:29 final size:29
Alignment explanation
Indices: 12301496--12301724 Score: 221
Period size: 29 Copynumber: 7.8 Consensus size: 29
12301486 CCCATAAGGT
*
12301496 CCCTAAACTGTCCAAAAATTACATTTTGAA
1 CCCTAAACTTTCCAAAAATTACATTTTG-A
*
12301526 CCCCAAACTTTCCAAAAATTACATTTT-A
1 CCCTAAACTTTCCAAAAATTACATTTTGA
** *
12301554 CCCTTAAACTTTTTAAAAATTACATTTTAA
1 CCC-TAAACTTTCCAAAAATTACATTTTGA
* *
12301584 CCCCTAAACTTTTCAAAAATTATATTTTTTGA
1 -CCCTAAACTTTCCAAAAATTACA--TTTTGA
* *
12301616 CCCTAAACTTTCCAAACATCACACTTTT-A
1 CCCTAAACTTTCCAAAAATTACA-TTTTGA
* * * *
12301645 CCTTTGAAC-TTCCAATAATTATATTTTGA
1 CC-CTAAACTTTCCAAAAATTACATTTTGA
* * *
12301674 CCCCAAATTTTCTAAAAATTACATTTTGA
1 CCCTAAACTTTCCAAAAATTACATTTTGA
*
12301703 CCCCAAACTTTCCAAAAATTAC
1 CCCTAAACTTTCCAAAAATTAC
12301725 CGTTTTACCC
Statistics
Matches: 163, Mismatches: 28, Indels: 17
0.78 0.13 0.08
Matches are distributed among these distances:
28 10 0.06
29 74 0.45
30 52 0.32
31 22 0.13
32 5 0.03
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.36
Consensus pattern (29 bp):
CCCTAAACTTTCCAAAAATTACATTTTGA
Found at i:12301747 original size:29 final size:29
Alignment explanation
Indices: 12301715--12301826 Score: 77
Period size: 29 Copynumber: 3.9 Consensus size: 29
12301705 CCAAACTTTC
12301715 CAAAAATTACCGTTTTACCCCCGATTGTT
1 CAAAAATTACCGTTTTACCCCCGATTGTT
* ** ***
12301744 CAAAAATT-CCACTTTTGA-CTTCGA-ACCT
1 CAAAAATTACC-GTTTT-ACCCCCGATTGTT
* * * *
12301772 CAAAAAATTACCATTTTACCCTCGAGTGTC
1 C-AAAAATTACCGTTTTACCCCCGATTGTT
*
12301802 CAAAAGTTACCGTTTTACCCCCGAT
1 CAAAAATTACCGTTTTACCCCCGAT
12301827 CATCCCAAAA
Statistics
Matches: 61, Mismatches: 16, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
28 5 0.08
29 52 0.85
30 4 0.07
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (29 bp):
CAAAAATTACCGTTTTACCCCCGATTGTT
Found at i:12301749 original size:58 final size:58
Alignment explanation
Indices: 12301687--12301811 Score: 135
Period size: 58 Copynumber: 2.2 Consensus size: 58
12301677 CAAATTTTCT
* * * * *
12301687 AAAAATTACA-TTTTGACCCCAAACTTTCCAAAAATTACCGTTTTACCCCCGATTGTTC
1 AAAAATTACACTTTTGACCCCAAAC-CTCAAAAAATTACCATTTTACCCCCGAGTGTCC
* ** * *
12301745 AAAAATTCCACTTTTGACTTCGAACCTCAAAAAATTACCATTTTACCCTCGAGTGTCC
1 AAAAATTACACTTTTGACCCCAAACCTCAAAAAATTACCATTTTACCCCCGAGTGTCC
*
12301803 AAAAGTTAC
1 AAAAATTAC
12301812 CGTTTTACCC
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
58 43 0.80
59 11 0.20
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.31
Consensus pattern (58 bp):
AAAAATTACACTTTTGACCCCAAACCTCAAAAAATTACCATTTTACCCCCGAGTGTCC
Found at i:12301835 original size:30 final size:29
Alignment explanation
Indices: 12301775--12301859 Score: 73
Period size: 29 Copynumber: 2.9 Consensus size: 29
12301765 CGAACCTCAA
* * ***
12301775 AAAATTACCATTTTACCCTCGAGTGT-CC
1 AAAATTACCGTTTTACCCCCGAACATCCC
*
12301803 AAAAGTTACCGTTTTACCCCCGATCATCCC
1 AAAA-TTACCGTTTTACCCCCGAACATCCC
** *
12301833 AAAATTGTCGTTTTACCCTCGAACATC
1 AAAATTACCGTTTTACCCCCGAACATC
12301860 TAGAAATTGC
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
28 4 0.09
29 36 0.78
30 6 0.13
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.31
Consensus pattern (29 bp):
AAAATTACCGTTTTACCCCCGAACATCCC
Found at i:12307170 original size:36 final size:36
Alignment explanation
Indices: 12307084--12307170 Score: 90
Period size: 36 Copynumber: 2.4 Consensus size: 36
12307074 TGATAACTAT
* *
12307084 TGTGA-AAGTGAATATGTGGGTATGTTATTCATGCCA
1 TGTGACAA-TGAATATGTAGGTATGTTATCCATGCCA
* *
12307120 T-TAGGCAGA-AAATATGTAGGTATGTTATCCATGCCA
1 TGT-GACA-ATGAATATGTAGGTATGTTATCCATGCCA
12307156 TGTGACAATGAATAT
1 TGTGACAATGAATAT
12307171 ATTGTTCTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
35 2 0.05
36 35 0.88
37 2 0.05
38 1 0.03
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (36 bp):
TGTGACAATGAATATGTAGGTATGTTATCCATGCCA
Found at i:12307605 original size:23 final size:23
Alignment explanation
Indices: 12307579--12307818 Score: 256
Period size: 23 Copynumber: 10.5 Consensus size: 23
12307569 GTTATGATTC
*
12307579 ATGTG-TTATATGCTTAAACATTA
1 ATGTGATT-TATGCTTAAATATTA
* *
12307602 ATGTGATTT-GGACTTAATTATTA
1 ATGTGATTTATG-CTTAAATATTA
** *
12307625 ATGTGATTTGGGCTTAAATATAA
1 ATGTGATTTATGCTTAAATATTA
*
12307648 AAGTGATTTATGCTTAAATATTA
1 ATGTGATTTATGCTTAAATATTA
* * *
12307671 ATGTAATTTGTGTTTAAATATTA
1 ATGTGATTTATGCTTAAATATTA
*
12307694 ATATGATTTATGCTTAAA-AGTTA
1 ATGTGATTTATGCTTAAATA-TTA
*
12307717 ATGTGATTTATAG-TTAAAGATTA
1 ATGTGATTTAT-GCTTAAATATTA
* *
12307740 ATGTGATTT-TACTTAAATGTTA
1 ATGTGATTTATGCTTAAATATTA
*
12307762 ATATGATTTATGCTTAAATATTA
1 ATGTGATTTATGCTTAAATATTA
* *
12307785 ATGCGATGTATGCTTAAATATTA
1 ATGTGATTTATGCTTAAATATTA
12307808 ATGTGATTTAT
1 ATGTGATTTAT
12307819 TTGTAGATAG
Statistics
Matches: 180, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
22 19 0.11
23 155 0.86
24 6 0.03
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.45
Consensus pattern (23 bp):
ATGTGATTTATGCTTAAATATTA
Found at i:12308556 original size:21 final size:19
Alignment explanation
Indices: 12308530--12308568 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
12308520 GAGCCTAAAT
12308530 TAAAATATATAAATTAATTAA
1 TAAAATATA-AAA-TAATTAA
12308551 TAAAATATAAAATAATTA
1 TAAAATATAAAATAATTA
12308569 TTAAGAACGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 3 0.17
21 9 0.50
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAAATATAAAATAATTAA
Found at i:12308560 original size:19 final size:18
Alignment explanation
Indices: 12308527--12308568 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
12308517 ACTGAGCCTA
* *
12308527 AATTAAAATATATAAATT
1 AATTAAAAAATATAAAAT
12308545 AATTAATAAAATATAAAAT
1 AATTAA-AAAATATAAAAT
12308564 AATTA
1 AATTA
12308569 TTAAGAACGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTAAAAAATATAAAAT
Found at i:12308674 original size:10 final size:10
Alignment explanation
Indices: 12308661--12308814 Score: 60
Period size: 10 Copynumber: 16.0 Consensus size: 10
12308651 TTTTTAGTTC
12308661 TTTTATATAT
1 TTTTATATAT
12308671 TTTTATATAT
1 TTTTATATAT
* *
12308681 TTATAAAT-T
1 TTTTATATAT
12308690 TTTATATTATAAAT
1 TTT-TA-TAT--AT
12308704 TTTTATATAT
1 TTTTATATAT
* *
12308714 TTTTA-AAAA
1 TTTTATATAT
* *
12308723 TATTATATGCT
1 TTTTATAT-AT
12308734 TTTTATATA-
1 TTTTATATAT
*
12308743 TTGT-TA-A-
1 TTTTATATAT
*
12308750 TTGTATATAT
1 TTTTATATAT
12308760 TTTTA-A-AT
1 TTTTATATAT
12308768 TTTTATA-A-
1 TTTTATATAT
* ***
12308776 ATTTATACGC
1 TTTTATATAT
12308786 TTTTATATAT
1 TTTTATATAT
**
12308796 TGATATAT-T
1 TTTTATATAT
12308805 TTTTATATAT
1 TTTTATATAT
12308815 AAGCTTTTAT
Statistics
Matches: 106, Mismatches: 24, Indels: 28
0.67 0.15 0.18
Matches are distributed among these distances:
7 5 0.05
8 17 0.16
9 23 0.22
10 43 0.41
11 9 0.08
12 3 0.03
13 2 0.02
14 4 0.04
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.60
Consensus pattern (10 bp):
TTTTATATAT
Found at i:12308683 original size:18 final size:18
Alignment explanation
Indices: 12308661--12308856 Score: 97
Period size: 18 Copynumber: 11.2 Consensus size: 18
12308651 TTTTTAGTTC
*
12308661 TTTTATATATTTTTATAT
1 TTTTATATATTTATATAT
* * *
12308679 ATTTATAAATTTTTATA-
1 TTTTATATATTTATATAT
* * *
12308696 TTATAAATTTTTATATAT
1 TTTTATATATTTATATAT
* * *
12308714 TTTTAAAAATATTATATGCT
1 TTTTATATAT-TTATAT-AT
12308734 TTTTATATATTGT-TA-A-
1 TTTTATATATT-TATATAT
* * *
12308750 TTGTATATATTTTTAAAT
1 TTTTATATATTTATATAT
* ***
12308768 TTTTATAAATTTATACGC
1 TTTTATATATTTATATAT
*
12308786 TTTTATATATTGATATAT
1 TTTTATATATTTATATAT
*
12308804 TTTT-TATA--TATA-AGC
1 TTTTATATATTTATATA-T
12308819 TTTTATATATTTATATA-
1 TTTTATATATTTATATAT
**
12308836 AATT-TATATTTATATAT
1 TTTTATATATTTATATAT
12308853 TTTT
1 TTTT
12308857 TAAAATAATA
Statistics
Matches: 132, Mismatches: 33, Indels: 27
0.69 0.17 0.14
Matches are distributed among these distances:
14 1 0.01
15 8 0.06
16 28 0.21
17 20 0.15
18 55 0.42
19 10 0.08
20 10 0.08
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (18 bp):
TTTTATATATTTATATAT
Found at i:12308701 original size:15 final size:15
Alignment explanation
Indices: 12308671--12308711 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 15
12308661 TTTTATATAT
12308671 TTTTATATATTTATAAA
1 TTTT-TATA-TTATAAA
12308688 TTTTTATATTATAAA
1 TTTTTATATTATAAA
12308703 TTTTTATAT
1 TTTTTATAT
12308712 ATTTTTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 16 0.67
16 4 0.17
17 4 0.17
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTTATATTATAAA
Found at i:12313112 original size:76 final size:76
Alignment explanation
Indices: 12312982--12313149 Score: 201
Period size: 76 Copynumber: 2.2 Consensus size: 76
12312972 AGTTGTAAGC
* * *
12312982 GGTGTTTATCGGGCCTAATGCCTAGCAAGCTTCATGCCGGGGTTTATCCAGCTTAGTGCCTAGCA
1 GGTGTTTATCGGGCCTAATGCCTAGCAAGATTCATGCCGGGGTTTATCCAGCTTAATACCTAGCA
12313047 GGCTTCGTACT
66 GGCTTCGTACT
* * * * * ** *
12313058 GGTGTTTATCGGTCTTAGTGCCTAGCAGGATTCATGCCGGTGTTTATCGGGCTTAATATCTAGCA
1 GGTGTTTATCGGGCCTAATGCCTAGCAAGATTCATGCCGGGGTTTATCCAGCTTAATACCTAGCA
* *
12313123 GGCTTCGTGCC
66 GGCTTCGTACT
12313134 GGTGTATTTATCGGGC
1 GGTG--TTTATCGGGC
12313150 TATGTGCCTA
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
76 67 0.88
78 9 0.12
ACGTcount: A:0.16, C:0.22, G:0.29, T:0.33
Consensus pattern (76 bp):
GGTGTTTATCGGGCCTAATGCCTAGCAAGATTCATGCCGGGGTTTATCCAGCTTAATACCTAGCA
GGCTTCGTACT
Found at i:12313166 original size:40 final size:40
Alignment explanation
Indices: 12312986--12313227 Score: 146
Period size: 38 Copynumber: 6.2 Consensus size: 40
12312976 GTAAGCGGTG
* * * *
12312986 TTTATCGGGCCTA-ATGCCTAGCAAGCTTCATGCCGG-G-G
1 TTTATCGGG-CTATGTGCCTAGCAGGCTTCGTGCCGGTGTA
** * *
12313024 TTTATCCAGCT-TAGTGCCTAGCAGGCTTCGTACTGGTG--
1 TTTATCGGGCTAT-GTGCCTAGCAGGCTTCGTGCCGGTGTA
* * *
12313062 TTTATCGGTCT-TAGTGCCTAGCAGGATTCATGCCGGTG--
1 TTTATCGGGCTAT-GTGCCTAGCAGGCTTCGTGCCGGTGTA
*
12313100 TTTATCGGGCTTAATAT--CTAGCAGGCTTCGTGCCGGTGTA
1 TTTATCGGGC-T-ATGTGCCTAGCAGGCTTCGTGCCGGTGTA
* * *
12313140 TTTATCGGGCTATGTGCCTAGTAGGCTTCGTGCCAGTATA
1 TTTATCGGGCTATGTGCCTAGCAGGCTTCGTGCCGGTGTA
* * * * * * *
12313180 TGTTATCAGGCTTTGAGCCCAGCAAGTTTCGTGTCGGTGTA
1 T-TTATCGGGCTATGTGCCTAGCAGGCTTCGTGCCGGTGTA
12313221 TTGTATC
1 TT-TATC
12313228 AGGTAACTTG
Statistics
Matches: 160, Mismatches: 32, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
37 2 0.01
38 87 0.54
39 3 0.02
40 33 0.21
41 35 0.22
ACGTcount: A:0.17, C:0.21, G:0.28, T:0.34
Consensus pattern (40 bp):
TTTATCGGGCTATGTGCCTAGCAGGCTTCGTGCCGGTGTA
Found at i:12317577 original size:18 final size:18
Alignment explanation
Indices: 12317527--12317578 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
12317517 TCGTGCATCC
* *
12317527 CATGCATTTCATACAACT
1 CATGCATTTCATGCAACA
* * * *
12317545 CGTGCACTTCTTGCAGCA
1 CATGCATTTCATGCAACA
12317563 CATGCATTTCATGCAA
1 CATGCATTTCATGCAA
12317579 TGTACTGCAC
Statistics
Matches: 24, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (18 bp):
CATGCATTTCATGCAACA
Found at i:12318110 original size:21 final size:21
Alignment explanation
Indices: 12318086--12318128 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
12318076 CATCCCAACC
* *
12318086 TGTTCGTGATGCGTAACCACA
1 TGTTCATGATGCGCAACCACA
12318107 TGTTCATGATGCGCAACCACA
1 TGTTCATGATGCGCAACCACA
12318128 T
1 T
12318129 TTAAAGGGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (21 bp):
TGTTCATGATGCGCAACCACA
Found at i:12319029 original size:14 final size:14
Alignment explanation
Indices: 12319012--12319039 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
12319002 AGAATAACAT
12319012 TTCAAAAAAAGAAA
1 TTCAAAAAAAGAAA
12319026 TTCAAAAAAAGAAA
1 TTCAAAAAAAGAAA
12319040 AAGAAAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.14
Consensus pattern (14 bp):
TTCAAAAAAAGAAA
Found at i:12333725 original size:47 final size:47
Alignment explanation
Indices: 12333674--12333784 Score: 143
Period size: 47 Copynumber: 2.4 Consensus size: 47
12333664 AGTTATTGGG
* *
12333674 AGTTTATTTGCGGTTTTGGTGGCTTGCCCATA-ATATTGATTATTGAC
1 AGTTTATATGCGATTTTGGTGGCTTGCCCA-AGATATTGATTATTGAC
* * * *
12333721 AGTTTATATGTGATTTTGGTGGCTTGTCCAAGATTTTGATTATTGGC
1 AGTTTATATGCGATTTTGGTGGCTTGCCCAAGATATTGATTATTGAC
*
12333768 AGTTTATCTGCGATTTT
1 AGTTTATATGCGATTTT
12333785 CATGACACTA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 1 0.02
47 54 0.98
ACGTcount: A:0.19, C:0.11, G:0.23, T:0.47
Consensus pattern (47 bp):
AGTTTATATGCGATTTTGGTGGCTTGCCCAAGATATTGATTATTGAC
Found at i:12337541 original size:19 final size:19
Alignment explanation
Indices: 12337495--12337572 Score: 83
Period size: 19 Copynumber: 4.1 Consensus size: 19
12337485 AAAATACAAA
12337495 AAAAATTCAAAAATACTTT-T
1 AAAAATTC-AAAATA-TTTAT
12337515 CAAAAATTCAAAATAATATT-T
1 -AAAAATTCAAAAT-AT-TTAT
12337536 -AAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
12337554 AAAAATTCAAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
12337572 A
1 A
12337573 TTTTTAAAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
17 2 0.04
18 10 0.19
19 23 0.43
20 6 0.11
21 12 0.23
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:12337603 original size:10 final size:11
Alignment explanation
Indices: 12337572--12337617 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
12337562 AAAAATTTAT
*
12337572 ATTTTTAAAAA
1 ATTTATAAAAA
12337583 ATTTATAAAAA
1 ATTTATAAAAA
*
12337594 ATTTCTAAAAAA
1 ATTTAT-AAAAA
*
12337606 ATATATAAAAA
1 ATTTATAAAAA
12337617 A
1 A
12337618 AGTTAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 21 0.70
12 9 0.30
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
ATTTATAAAAA
Found at i:12337604 original size:12 final size:12
Alignment explanation
Indices: 12337578--12337627 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
12337568 TTATATTTTT
12337578 AAAAAATTTAT-
1 AAAAAATTTATA
*
12337589 AAAAAATTTCTA
1 AAAAAATTTATA
*
12337601 AAAAAATATATA
1 AAAAAATTTATA
*
12337613 AAAAAAGTTA-A
1 AAAAAATTTATA
12337624 AAAA
1 AAAA
12337628 TTAAAAAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
11 15 0.45
12 18 0.55
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (12 bp):
AAAAAATTTATA
Found at i:12337626 original size:23 final size:23
Alignment explanation
Indices: 12337578--12337627 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
12337568 TTATATTTTT
* * *
12337578 AAAAAATTTATAAAAAATTTCTA
1 AAAAAATATATAAAAAAGTTCAA
12337601 AAAAAATATATAAAAAAAGTT-AA
1 AAAAAATATAT-AAAAAAGTTCAA
12337624 AAAA
1 AAAA
12337628 TTAAAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (23 bp):
AAAAAATATATAAAAAAGTTCAA
Found at i:12338534 original size:26 final size:27
Alignment explanation
Indices: 12338498--12338549 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
12338488 TTTATATTAA
*
12338498 AATTTATATA-TTTTATTAATAAATTT
1 AATTTAAATATTTTTATTAATAAATTT
*
12338524 AATTTAAATATTTTTATTAATTAATT
1 AATTTAAATATTTTTATTAATAAATT
12338550 AAAATTCAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (27 bp):
AATTTAAATATTTTTATTAATAAATTT
Found at i:12353316 original size:21 final size:21
Alignment explanation
Indices: 12353292--12353335 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
12353282 TCCTTCCTCT
* *
12353292 TTGTGCTTCTTCTTTTTGTCC
1 TTGTGCTTCCTCTTCTTGTCC
12353313 TTGTGCTTCCTCTTCTTGTCC
1 TTGTGCTTCCTCTTCTTGTCC
12353334 TT
1 TT
12353336 CGAACCAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.00, C:0.27, G:0.14, T:0.59
Consensus pattern (21 bp):
TTGTGCTTCCTCTTCTTGTCC
Found at i:12360616 original size:24 final size:23
Alignment explanation
Indices: 12360564--12360617 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
12360554 TATACCTTCT
12360564 CAACTTCTTCATTTCTATTCTTTTG
1 CAACTTCTTCATTTC--TTCTTTTG
12360589 -AACTTCTTCAATTTC-TCTTGTTG
1 CAACTTCTTC-ATTTCTTCTT-TTG
12360612 CAACTT
1 CAACTT
12360618 ACGCAACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
22 4 0.15
23 3 0.12
24 14 0.54
25 5 0.19
ACGTcount: A:0.19, C:0.24, G:0.06, T:0.52
Consensus pattern (23 bp):
CAACTTCTTCATTTCTTCTTTTG
Found at i:12361379 original size:21 final size:21
Alignment explanation
Indices: 12361306--12361396 Score: 87
Period size: 21 Copynumber: 4.2 Consensus size: 21
12361296 CCAAAATCTT
12361306 TAATTTAAAATACCCTAAACCC
1 TAATTTAAAATA-CCTAAACCC
* * **
12361328 TTATTTAAAATACCAAAATTC
1 TAATTTAAAATACCTAAACCC
12361349 TAATTTTAAAA-ACCTTAAACCC
1 TAA-TTTAAAATACC-TAAACCC
*
12361371 TAATTTAAAA-ATCCTAAAACC
1 TAATTTAAAATA-CCTAAACCC
12361392 TAATT
1 TAATT
12361397 AAACCAAAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
21 30 0.53
22 27 0.47
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
TAATTTAAAATACCTAAACCC
Found at i:12361382 original size:44 final size:44
Alignment explanation
Indices: 12361296--12361380 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 44
12361286 ATACAATTTT
* *
12361296 CCAAAATCTTTAATTTAAAATACCCTAAACCCTTATTTAAAATA
1 CCAAAATCTCTAATTTAAAATACCCTAAACCCTAATTTAAAATA
*
12361340 CCAAAAT-TCTAATTTTAAAA-ACCTTAAACCCTAATTTAAAA
1 CCAAAATCTCTAA-TTTAAAATACCCTAAACCCTAATTTAAAA
12361381 ATCCTAAAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 23 0.62
44 14 0.38
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (44 bp):
CCAAAATCTCTAATTTAAAATACCCTAAACCCTAATTTAAAATA
Found at i:12361395 original size:43 final size:44
Alignment explanation
Indices: 12361296--12361396 Score: 111
Period size: 43 Copynumber: 2.3 Consensus size: 44
12361286 ATACAATTTT
* *
12361296 CCAAAATCTTTAA-TTTAAAATACCCTAAACCCTTATTTAAAATA
1 CCAAAATC-CTAATTTTAAAATACCCTAAACCCTAATTTAAAATA
* *
12361340 CCAAAATTCTAATTTTAAAA-ACCTTAAACCCTAATTTAAAA-A
1 CCAAAATCCTAATTTTAAAATACCCTAAACCCTAATTTAAAATA
12361382 TCCTAAAA-CCTAATT
1 -CC-AAAATCCTAATT
12361397 AAACCAAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
42 1 0.02
43 30 0.61
44 18 0.37
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.33
Consensus pattern (44 bp):
CCAAAATCCTAATTTTAAAATACCCTAAACCCTAATTTAAAATA
Found at i:12362119 original size:139 final size:139
Alignment explanation
Indices: 12361967--12362225 Score: 335
Period size: 139 Copynumber: 1.9 Consensus size: 139
12361957 AATTAGTTTC
* * * * * * * * * *
12361967 TTTGGTAAGATGGTTAAATATTAGTGGTTTTGTCTTTGACTCTTGGGTTTAATTCCTC-TCTCAG
1 TTTGGTAAGATGGTTAAATAATAATGATTTTATCCTTGAATCCTAGGTTCAATTCCTCTTCT-AA
* * *
12362031 TCACATTTGTAGTTTTTATTTCATATTGTTTTAAGCTTT-TTTATTTTTAATTAATATTTTTAAC
65 ACACATTTGTA-ATTTTATTTCATATTGTTTCAAGCTTTCTTTATTTTTAATTAATATTTTTAAC
12362095 ATATTAGCTCA
129 ATATTAGCTCA
*
12362106 TTTGGTTAA-ATGGTTAAATAATAATGATTTTATCCTTGAATCCTAGGTTCACTTCCTCTTCTAA
1 TTTGG-TAAGATGGTTAAATAATAATGATTTTATCCTTGAATCCTAGGTTCAATTCCTCTTCTAA
*
12362170 ACACATTTGTAATTTTATTTCATGTTGTTTCAAGCTTTCTTTATTTTTAATTAATA
65 ACACATTTGTAATTTTATTTCATATTGTTTCAAGCTTTCTTTATTTTTAATTAATA
12362226 AATATATTAT
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
138 24 0.24
139 72 0.71
140 6 0.06
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.51
Consensus pattern (139 bp):
TTTGGTAAGATGGTTAAATAATAATGATTTTATCCTTGAATCCTAGGTTCAATTCCTCTTCTAAA
CACATTTGTAATTTTATTTCATATTGTTTCAAGCTTTCTTTATTTTTAATTAATATTTTTAACAT
ATTAGCTCA
Found at i:12363694 original size:36 final size:39
Alignment explanation
Indices: 12363648--12363730 Score: 102
Period size: 36 Copynumber: 2.2 Consensus size: 39
12363638 CTGTTGTTAT
*
12363648 TATGTTTGTTTTG-TATGTATCTTATGAATATTA-T-TG
1 TATGTATGTTTTGCTATGTATCTTATGAATATTACTGTG
* * *
12363684 TATGTATG-TTTGCTATGTATGTTATGACTATTACTGTT
1 TATGTATGTTTTGCTATGTATCTTATGAATATTACTGTG
12363722 TATGTATGT
1 TATGTATGT
12363731 CTGTTGTTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
35 4 0.10
36 25 0.64
37 1 0.03
38 9 0.23
ACGTcount: A:0.22, C:0.05, G:0.18, T:0.55
Consensus pattern (39 bp):
TATGTATGTTTTGCTATGTATCTTATGAATATTACTGTG
Found at i:12363784 original size:92 final size:91
Alignment explanation
Indices: 12363595--12363820 Score: 253
Period size: 92 Copynumber: 2.5 Consensus size: 91
12363585 ATGTTCGTTA
* * *
12363595 GTATGTTTGTTTTGTATGTTATGAATATGT-CTATTATGTATGTCTGTTGTTATTATGTTTGTTT
1 GTATGTTTGTTATGTATGTTATGAATAT-TACTTTTATGTATGTCTGTTGTTATTATG-TTGTTA
*
12363659 TGTATGTATCTTATGAATATTATTGTAT
64 TGTATGTATATTATGAATATTATTGTAT
* *
12363687 GTATGTTTGCTATGTATGTTATGACTATTACTGTTTATGTATGTCTGTTGTTATTATG-TG-TAT
1 GTATGTTTGTTATGTATGTTATGAATATTACT-TTTATGTATGTCTGTTGTTATTATGTTGTTAT
**
12363750 -TATGTATATTATTGTTTATTATTGATTAT
65 GTATGTATATTA-TGAATATTATTG--TAT
* * **
12363779 GTATGTATATTATGTATGTTATGTTTATTACTATTTATGTAT
1 GTATGTTTGTTATGTATGTTATGAATATTACT-TTTATGTAT
12363821 ATAAGTTATG
Statistics
Matches: 115, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
89 10 0.09
90 12 0.10
91 3 0.03
92 66 0.57
93 24 0.21
ACGTcount: A:0.22, C:0.04, G:0.17, T:0.57
Consensus pattern (91 bp):
GTATGTTTGTTATGTATGTTATGAATATTACTTTTATGTATGTCTGTTGTTATTATGTTGTTATG
TATGTATATTATGAATATTATTGTAT
Found at i:12363817 original size:38 final size:39
Alignment explanation
Indices: 12363737--12363820 Score: 111
Period size: 38 Copynumber: 2.2 Consensus size: 39
12363727 ATGTCTGTTG
* *
12363737 TTAT-TATGTGTATTATGTATATTATTGTTTATTATTGA
1 TTATGTATGTATATTATGTATATTATTGTTTATTACTGA
*
12363775 TTATGTATGTATATTATGTATGTTA-TGTTTATTACT-A
1 TTATGTATGTATATTATGTATATTATTGTTTATTACTGA
12363812 TTTATGTAT
1 -TTATGTAT
12363821 ATAAGTTATG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
37 1 0.02
38 22 0.54
39 18 0.44
ACGTcount: A:0.26, C:0.01, G:0.13, T:0.60
Consensus pattern (39 bp):
TTATGTATGTATATTATGTATATTATTGTTTATTACTGA
Found at i:12363818 original size:25 final size:27
Alignment explanation
Indices: 12363788--12363850 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 27
12363778 TGTATGTATA
*
12363788 TTATG-TAT-GTTATGTTTATTACTAT
1 TTATGATATAGTTATGTTTATCACTAT
12363813 TTATGTATATAAGTTATGTTTATCACTAT
1 TTATG-ATAT-AGTTATGTTTATCACTAT
*
12363842 TTAAGATAT
1 TTATGATAT
12363851 GTATGCATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 5 0.16
27 3 0.09
28 4 0.12
29 20 0.62
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.54
Consensus pattern (27 bp):
TTATGATATAGTTATGTTTATCACTAT
Found at i:12363830 original size:38 final size:39
Alignment explanation
Indices: 12363747--12363831 Score: 104
Period size: 38 Copynumber: 2.2 Consensus size: 39
12363737 TTATTATGTG
* *
12363747 TATTATGTATATTATTGTTTATTATTGATTATGTATGTA
1 TATTATGTATATTATTGTTTATTACTGATTATGTATATA
*
12363786 TATTATGTATGTTA-TGTTTATTACT-ATTTATGTATATA
1 TATTATGTATATTATTGTTTATTACTGA-TTATGTATATA
12363824 -AGTTATGT
1 TA-TTATGT
12363832 TTATCACTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
37 2 0.05
38 26 0.63
39 13 0.32
ACGTcount: A:0.28, C:0.01, G:0.13, T:0.58
Consensus pattern (39 bp):
TATTATGTATATTATTGTTTATTACTGATTATGTATATA
Found at i:12367160 original size:30 final size:30
Alignment explanation
Indices: 12367124--12367180 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
12367114 AATTTGATGG
*
12367124 TTTTATTTTGTTAG-ATCATTTTGATGGATA
1 TTTTATTTT-TTAGAATCATTTCGATGGATA
*
12367154 TTTTATTTTTTTGAATCATTTCGATGG
1 TTTTATTTTTTAGAATCATTTCGATGG
12367181 TTTTATTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.21, C:0.05, G:0.16, T:0.58
Consensus pattern (30 bp):
TTTTATTTTTTAGAATCATTTCGATGGATA
Found at i:12367479 original size:14 final size:16
Alignment explanation
Indices: 12367460--12367491 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
12367450 ACTTTGTTGT
12367460 TCCTTG-AC-ATTTTA
1 TCCTTGTACAATTTTA
12367474 TCCTTGTACAATTTTA
1 TCCTTGTACAATTTTA
12367490 TC
1 TC
12367492 TTCTCTTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 2 0.12
16 8 0.50
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TCCTTGTACAATTTTA
Found at i:12372084 original size:1 final size:1
Alignment explanation
Indices: 12372078--12372102 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
12372068 TGTGGGCATT
12372078 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
12372103 AAAGAACATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:12378295 original size:16 final size:16
Alignment explanation
Indices: 12378274--12378308 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
12378264 TTTTGCATGT
12378274 AAAGCAAAATGGAAGC
1 AAAGCAAAATGGAAGC
12378290 AAAGCAAAATGGAAGC
1 AAAGCAAAATGGAAGC
12378306 AAA
1 AAA
12378309 TATTAGCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.60, C:0.11, G:0.23, T:0.06
Consensus pattern (16 bp):
AAAGCAAAATGGAAGC
Found at i:12379558 original size:81 final size:81
Alignment explanation
Indices: 12379418--12379582 Score: 267
Period size: 81 Copynumber: 2.0 Consensus size: 81
12379408 AGTTACATGC
* * * * * * *
12379418 AATCTTAGAAATAGGACGATATAAGTCTATCAGATTAGAGTCAAATCTAATAGGAGAATCCATAG
1 AATCCTAGAAATAGGACGACATAAGTCTACCAAATTAGAGTAAAATCTAATAAGAGAATCCATAA
12379483 CACTAGTTAATGCGAT
66 CACTAGTTAATGCGAT
12379499 AATCCTAGAAATAGGACGACATAAGTCTACCAAATTAGAGTAAAATCTAATAAGAGAATCCATAA
1 AATCCTAGAAATAGGACGACATAAGTCTACCAAATTAGAGTAAAATCTAATAAGAGAATCCATAA
12379564 CACTAGTTAATGCGAT
66 CACTAGTTAATGCGAT
12379580 AAT
1 AAT
12379583 AGGGGTTTTA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.25
Consensus pattern (81 bp):
AATCCTAGAAATAGGACGACATAAGTCTACCAAATTAGAGTAAAATCTAATAAGAGAATCCATAA
CACTAGTTAATGCGAT
Found at i:12389535 original size:40 final size:40
Alignment explanation
Indices: 12389441--12389535 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
12389431 ACCGAAAATG
* *
12389441 CCACAAAAGGTAAAGCAATAGCGGCGTTTTTGAAGAAACG
1 CCACAAAAGGTAAAGCAATAGCAGCGTTTTTGAAGAAACA
* ** *
12389481 CCGCAAAAACTAAAGCAATAGCAGCGTTTTTTAAGAAACA
1 CCACAAAAGGTAAAGCAATAGCAGCGTTTTTGAAGAAACA
*
12389521 CCACATAAGGTAAAG
1 CCACAAAAGGTAAAG
12389536 AGATATAGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.43, C:0.19, G:0.20, T:0.18
Consensus pattern (40 bp):
CCACAAAAGGTAAAGCAATAGCAGCGTTTTTGAAGAAACA
Found at i:12391369 original size:42 final size:41
Alignment explanation
Indices: 12391294--12391390 Score: 99
Period size: 42 Copynumber: 2.3 Consensus size: 41
12391284 TAAACGTTGC
* * * *
12391294 AAAAGGTGA-AGCAATAATGGCGTTTTTGAGAAAAACGCCGCT
1 AAAAGGTAAGAGCAATAATGGCATTTGTGAG-AAAACCCCG-T
* *
12391336 -AAAGGTAAGAGCAATAGTGGCATTTGTGGGAAAACCCCGT
1 AAAAGGTAAGAGCAATAATGGCATTTGTGAGAAAACCCCGT
12391376 AAAAGGTAAAGAGCA
1 AAAAGGT-AAGAGCA
12391391 TTAGCGATGT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
40 1 0.02
41 21 0.46
42 24 0.52
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.19
Consensus pattern (41 bp):
AAAAGGTAAGAGCAATAATGGCATTTGTGAGAAAACCCCGT
Found at i:12396741 original size:43 final size:43
Alignment explanation
Indices: 12396653--12396879 Score: 258
Period size: 43 Copynumber: 5.3 Consensus size: 43
12396643 GGCTACAACT
* * * *
12396653 TAAAGA-CATGTTCTATAGCGGCATTTGTGGAAAAAATGCCAC
1 TAAAGACCATGTTCTATAGCGGCGTTTGTGGGAAAAACGCCGC
* * * * * *
12396695 TAAAAACCATGCTCTATAGTGGCGTTTATGGGAAAAGCACCGC
1 TAAAGACCATGTTCTATAGCGGCGTTTGTGGGAAAAACGCCGC
* * * *
12396738 TAAAGACCATGTTCTATAGCAGCATTTGTGGGAAAAATGCCGT
1 TAAAGACCATGTTCTATAGCGGCGTTTGTGGGAAAAACGCCGC
12396781 TAAAGACCATGTTCTATAGCGGCGTTTGTGGGAAAAACGCCGC
1 TAAAGACCATGTTCTATAGCGGCGTTTGTGGGAAAAACGCCGC
** * * * *
12396824 TAAAGGTCATGTTCTATAGCGGTGTTTGTGGGAAAAGCGTCGT
1 TAAAGACCATGTTCTATAGCGGCGTTTGTGGGAAAAACGCCGC
*
12396867 TAAAGATCATGTT
1 TAAAGACCATGTT
12396880 TTTCTCACAT
Statistics
Matches: 153, Mismatches: 31, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
42 5 0.03
43 148 0.97
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (43 bp):
TAAAGACCATGTTCTATAGCGGCGTTTGTGGGAAAAACGCCGC
Done.