Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 46 of 143
Found at i:14563062 original size:21 final size:22
Alignment explanation
Indices: 14563016--14563071 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
14563006 ATGGTTTCAC
*
14563016 ATTTAGG-GTTTAAGGTTTATA
1 ATTTAGGAGTTTAAGGTTTAGA
* *
14563037 ATTTA-TAGTTTAAGGTTTAGG
1 ATTTAGGAGTTTAAGGTTTAGA
*
14563058 GTTTAGGAGTTTAA
1 ATTTAGGAGTTTAA
14563072 AACTAAACTC
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 21 0.75
22 7 0.25
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (22 bp):
ATTTAGGAGTTTAAGGTTTAGA
Found at i:14565915 original size:15 final size:17
Alignment explanation
Indices: 14565895--14565926 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14565885 ATCTGTTAAA
14565895 CAAT-AAATAA-AATTT
1 CAATAAAATAACAATTT
14565910 CAATAAAATAACAATTT
1 CAATAAAATAACAATTT
14565927 AAAAATATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 6 0.40
17 5 0.33
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.31
Consensus pattern (17 bp):
CAATAAAATAACAATTT
Found at i:14568395 original size:25 final size:24
Alignment explanation
Indices: 14568356--14568407 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
14568346 TAGCTCTCTG
*
14568356 TTCTTTCTTCTTTTATTTCTTTTGT
1 TTCTTTCTTCTTTTA-TTCTTTTAT
14568381 TTCTTTCTT-TCTTTATTCTTTTAT
1 TTCTTTCTTCT-TTTATTCTTTTAT
14568405 TTC
1 TTC
14568408 ATATATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.75
Consensus pattern (24 bp):
TTCTTTCTTCTTTTATTCTTTTAT
Found at i:14568484 original size:13 final size:12
Alignment explanation
Indices: 14568423--14568495 Score: 60
Period size: 13 Copynumber: 6.0 Consensus size: 12
14568413 TATATATTAG
*
14568423 TTAATAATAATA
1 TTAATTATAATA
*
14568435 ATAA-TATAATA
1 TTAATTATAATA
*
14568446 CTAATTA-AATA
1 TTAATTATAATA
* *
14568457 ATAATTTATATTA
1 TTAA-TTATAATA
14568470 TTATATTATAATA
1 TTA-ATTATAATA
14568483 TTAATTAATAATA
1 TTAATT-ATAATA
14568496 AATTAAAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
11 16 0.33
12 11 0.22
13 21 0.43
14 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (12 bp):
TTAATTATAATA
Found at i:14575426 original size:25 final size:24
Alignment explanation
Indices: 14575387--14575438 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
14575377 TAGCTCTCTG
*
14575387 TTCTTTCTTCTTTTATTTCTTTTGT
1 TTCTTTCTTCTTTTA-TTCTTTTAT
14575412 TTCTTTCTT-TCTTTATTCTTTTAT
1 TTCTTTCTTCT-TTTATTCTTTTAT
14575436 TTC
1 TTC
14575439 ATATATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.75
Consensus pattern (24 bp):
TTCTTTCTTCTTTTATTCTTTTAT
Found at i:14575461 original size:3 final size:3
Alignment explanation
Indices: 14575453--14575490 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
14575443 ATATATTAGT
*
14575453 TAA TAA TAA TAA TAA T-A TAA TAA TAA TTA -AA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
14575491 TTATATTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 3 0.10
3 28 0.90
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:14575474 original size:11 final size:11
Alignment explanation
Indices: 14575453--14575490 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
14575443 ATATATTAGT
14575453 TAATAATAATAA
1 TAAT-ATAATAA
14575465 TAATATAATAA
1 TAATATAATAA
14575476 TAAT-TAAATAA
1 TAATAT-AATAA
14575487 TAAT
1 TAAT
14575491 TTATATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 1 0.04
11 20 0.80
12 4 0.16
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
TAATATAATAA
Found at i:14575474 original size:14 final size:14
Alignment explanation
Indices: 14575454--14575490 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
14575444 TATATTAGTT
14575454 AATAATAATAA-TA
1 AATAATAATAATTA
14575467 ATATAATAATAATTA
1 A-ATAATAATAATTA
14575482 AATAATAAT
1 AATAATAAT
14575491 TTATATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.05
14 18 0.82
15 3 0.14
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
AATAATAATAATTA
Found at i:14575491 original size:11 final size:12
Alignment explanation
Indices: 14575453--14575525 Score: 69
Period size: 13 Copynumber: 6.0 Consensus size: 12
14575443 ATATATTAGT
*
14575453 TAATAATAATAA
1 TAATTATAATAA
14575465 TAA-TATAATAA
1 TAATTATAATAA
14575476 TAATTA-AATAA
1 TAATTATAATAA
* *
14575487 TAATTTATATTAT
1 TAA-TTATAATAA
*
14575500 TATATTATAATAT
1 TA-ATTATAATAA
14575513 TAATTAATAATAA
1 TAATT-ATAATAA
14575526 ATTAAAAATC
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
11 18 0.35
12 11 0.22
13 21 0.41
14 1 0.02
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATTATAATAA
Found at i:14581646 original size:80 final size:80
Alignment explanation
Indices: 14581510--14581661 Score: 250
Period size: 80 Copynumber: 1.9 Consensus size: 80
14581500 ATAATTTTCG
* * * *
14581510 TCAATTCATGGCACCCGGTGCCTAGCGGTTAAACCGTGATAAGTGAGCCCAACTCTAGTTGGAAT
1 TCAATTCATGGCACCCAGTGCCTAGCAGATAAACCGCGATAAGTGAGCCCAACTCTAGTTGGAAT
14581575 AACCAACTAAGTCTA
66 AACCAACTAAGTCTA
* *
14581590 TCAATTCATGGCACCCAGTGCCTAGCAGATAAACCGCGATAAGTGAGCCCAGCTCTAGTTGGATT
1 TCAATTCATGGCACCCAGTGCCTAGCAGATAAACCGCGATAAGTGAGCCCAACTCTAGTTGGAAT
14581655 AACCAAC
66 AACCAAC
14581662 GGCTTGCGCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (80 bp):
TCAATTCATGGCACCCAGTGCCTAGCAGATAAACCGCGATAAGTGAGCCCAACTCTAGTTGGAAT
AACCAACTAAGTCTA
Found at i:14596157 original size:43 final size:43
Alignment explanation
Indices: 14596096--14596382 Score: 382
Period size: 43 Copynumber: 6.7 Consensus size: 43
14596086 AAATCAATTG
14596096 ATGTATAAATGGAAGACTCATGTCTCGGAATGAGAGTGAGATT
1 ATGTATAAATGGAAGACTCATGTCTCGGAATGAGAGTGAGATT
* * * * *
14596139 ATGTATAAATGGAAGACTCGTGCCTTGGAATGAGTGAGAGATT
1 ATGTATAAATGGAAGACTCATGTCTCGGAATGAGAGTGAGATT
* *
14596182 ATGTGTAAATGGAAGACTCATGTCTCGGAATGAGCGTGAGATT
1 ATGTATAAATGGAAGACTCATGTCTCGGAATGAGAGTGAGATT
** * *
14596225 ATGTATAAAATGGAAGACTCATGTCTCAAAATGAGCGTGCGATT
1 ATGTAT-AAATGGAAGACTCATGTCTCGGAATGAGAGTGAGATT
* *
14596269 ATGTATAAATGGAAGACTCATGTCTCAGAATGAGTGTGAGATT
1 ATGTATAAATGGAAGACTCATGTCTCGGAATGAGAGTGAGATT
*
14596312 ATATATAAATGGAAGACTCATGTCTC-GAGATGAGCA-TGAGATT
1 ATGTATAAATGGAAGACTCATGTCTCGGA-ATGAG-AGTGAGATT
* *
14596355 ATGTTTAAA-GGAAGACTTATGTCTCGGA
1 ATGTATAAATGGAAGACTCATGTCTCGGA
14596383 TAGAGCATAA
Statistics
Matches: 217, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
42 17 0.08
43 160 0.74
44 40 0.18
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (43 bp):
ATGTATAAATGGAAGACTCATGTCTCGGAATGAGAGTGAGATT
Found at i:14596236 original size:23 final size:23
Alignment explanation
Indices: 14596210--14596277 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 23
14596200 CATGTCTCGG
14596210 AATGAGCGTGAGATTATGTATAA
1 AATGAGCGTGAGATTATGTATAA
* * *
14596233 AAT--G-G-AAGACTCATGTCTCAA
1 AATGAGCGTGAGA-TTATGTAT-AA
*
14596254 AATGAGCGTGCGATTATGTATAA
1 AATGAGCGTGAGATTATGTATAA
14596277 A
1 A
14596278 TGGAAGACTC
Statistics
Matches: 32, Mismatches: 7, Indels: 12
0.63 0.14 0.24
Matches are distributed among these distances:
19 3 0.09
20 7 0.22
21 6 0.19
23 7 0.22
24 7 0.22
25 2 0.06
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (23 bp):
AATGAGCGTGAGATTATGTATAA
Found at i:14596335 original size:130 final size:129
Alignment explanation
Indices: 14596096--14596379 Score: 410
Period size: 130 Copynumber: 2.2 Consensus size: 129
14596086 AAATCAATTG
** *
14596096 ATGTATAAATGGAAGACTCATGTCTCGGAATGAGAGTGAGATTATGTATAAATGGAAGACTCGTG
1 ATGTATAAATGGAAGACTCATGTCTCAAAATGAGAGTGAGATTATGTATAAATGGAAGACTCATG
** * * *
14596161 CCTTGGAATGAGTGAGAGATTATGTGTAAATGGAAGACTCATGTCTCG-GAATGAGCGTGAGATT
66 CCTCAGAATGAGTGAGAGATTATATATAAATGGAAGACTCATGTCTCGAG-ATGAGCATGAGATT
* *
14596225 ATGTATAAAATGGAAGACTCATGTCTCAAAATGAGCGTGCGATTATGTATAAATGGAAGACTCAT
1 ATGTAT-AAATGGAAGACTCATGTCTCAAAATGAGAGTGAGATTATGTATAAATGGAAGACTCAT
* *
14596290 GTCTCAGAATGAGTGTGAGATTATATATAAATGGAAGACTCATGTCTCGAGATGAGCATGAGATT
65 GCCTCAGAATGAGTGAGAGATTATATATAAATGGAAGACTCATGTCTCGAGATGAGCATGAGATT
* *
14596355 ATGTTTAAA-GGAAGACTTATGTCTC
1 ATGTATAAATGGAAGACTCATGTCTC
14596380 GGATAGAGCA
Statistics
Matches: 139, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
128 15 0.11
129 9 0.06
130 114 0.82
131 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (129 bp):
ATGTATAAATGGAAGACTCATGTCTCAAAATGAGAGTGAGATTATGTATAAATGGAAGACTCATG
CCTCAGAATGAGTGAGAGATTATATATAAATGGAAGACTCATGTCTCGAGATGAGCATGAGATT
Found at i:14596431 original size:42 final size:42
Alignment explanation
Indices: 14596177--14596435 Score: 133
Period size: 43 Copynumber: 6.0 Consensus size: 42
14596167 AATGAGTGAG
* * * * * * * *
14596177 AGATTATGTGTAAATGGAAGACTCATGTCTCGGAATGAGCGTG
1 AGATTATCT-TAAAAGGAAGACTTATGACTCAGATTGAGCATA
* * * * * * *
14596220 AGATTATGTATAAAATGGAAGACTCATGTCTCAAAATGAGCGTG
1 AGATTATCT-TAAAA-GGAAGACTTATGACTCAGATTGAGCATA
* * * * * * ** *
14596264 CGATTATGTATAAATGGAAGACTCATGTCTCAGAATGAGTGTG
1 AGATTATCT-TAAAAGGAAGACTTATGACTCAGATTGAGCATA
* * * * *
14596307 AGATTATATATAAATGGAAGACTCATGTCTCGAGA-TGAGCATG
1 AGATTATCT-TAAAAGGAAGACTTATGACTC-AGATTGAGCATA
* * * * *
14596350 AGATTATGTTTAAAGGAAGACTTATGTCTCGGATAGAGCATA
1 AGATTATCTTAAAAGGAAGACTTATGACTCAGATTGAGCATA
* *
14596392 AGATTTTCTTAAAAGGAAGACTTATGACTCAGTTTGAGCATA
1 AGATTATCTTAAAAGGAAGACTTATGACTCAGATTGAGCATA
14596434 AG
1 AG
14596436 GTTAATTCAG
Statistics
Matches: 187, Mismatches: 26, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
41 2 0.01
42 61 0.33
43 82 0.44
44 42 0.22
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.29
Consensus pattern (42 bp):
AGATTATCTTAAAAGGAAGACTTATGACTCAGATTGAGCATA
Found at i:14610578 original size:16 final size:17
Alignment explanation
Indices: 14610557--14610593 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
14610547 AATTAACTTA
*
14610557 AATTAATTAATTTTTT-
1 AATTAAATAATTTTTTC
14610573 AATTAAATAATTTTTTC
1 AATTAAATAATTTTTTC
14610590 AATT
1 AATT
14610594 CGATTCAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTAAATAATTTTTTC
Found at i:14614365 original size:265 final size:265
Alignment explanation
Indices: 14613388--14615680 Score: 2458
Period size: 265 Copynumber: 8.7 Consensus size: 265
14613378 TTCTACCCTC
* * *
14613388 AAATATGTAAATACACCGCATAAAGTATGAGGAATCATTACTCTTCTAGACCAACAACAACTGGT
1 AAATACGTAAATACACCGCATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGT
* * * *
14613453 AAGAAAATATTAGAACAAGATTTGTAATGATCAACATGAAGGCACGTATGTCTTGGACTATAAAA
66 AAAAAAATATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACGTATGTCTCGGACTATAAAT
* * * *
14613518 CATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACATAATTTCACCTGTGTAATTACATT
131 CATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACTTAATTTCACTTGTATAATTACGTT
* * * * *
14613583 TTTCTTCCCTCAAATTTTGATTGAACGTGTGAAAA-ACAAAGTGAGGCTCCCTCAGTATTATGTT
196 CTTCTTCCCTCAAATTTCGATTGAACATGTGAAAAGA-AAAGGGAGGTTCCCTCAGTATTATGTT
* *
14613647 AAGCGC
260 AAGGGA
* * * * * * * * *
14613653 AAATACTTAAACACACTGCATAAAGTATAAGGAACCATTACCCTTCTGGAGTAACAATAATTGGT
1 AAATACGTAAATACACCGCATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGT
*
14613718 AAAAAAAATATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACATATGTCTCGGACTATAAA
66 -AAAAAAATATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACGTATGTCTCGGACTATAAA
* * * * * *
14613783 TCATGCTTGCACAACCTTTAGCCTCAAGAAGTTATCAATACTAAATTTCACATGTGTAATTATGT
130 TCATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACTTAATTTCACTTGTATAATTACGT
** * * * *
14613848 TCTTCTTCCCTCAAATTTTAATTGAACGTGTGAAAAGCAAAGGAAGGTTCCCTCAGTATTATGAT
195 TCTTCTTCCCTCAAATTTCGATTGAACATGTGAAAAGAAAAGGGAGGTTCCCTCAGTATTATGTT
14613913 AAGGGA
260 AAGGGA
* * * * * * * * * *
14613919 TAATAAGTAAACAAACTGCATAAAGTATAAGGAATCACTAGCCTTCT-GAAGCAGCAACAATTGG
1 AAATACGTAAATACACCGCATAAAGTATGAGGAATCATTACCCTTCTAG-AGCAACAACAACTGG
** * *
14613983 TACAAAAAATGATTAGAACAAGATTTGTAATGAAAAACATGAAGACACGTATGTCTCGGACTATA
65 TA-AAAAAAT-ATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACGTATGTCTCGGACTATA
* ** * *
14614048 AAGCATGCTTGCACAACATTTGATCTCAAGAAGTTATCAATACTTAATTTGACTTGTGTAATTAC
128 AATCATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACTTAATTTCACTTGTATAATTAC
* * * *
14614113 GTTCTTCTTCCCTCAAATTTCAATTGAACATGTGAAAAGTAAAGGGAGGTTCCCTAAGTATTATA
193 GTTCTTCTTCCCTCAAATTTCGATTGAACATGTGAAAAGAAAAGGGAGGTTCCCTCAGTATTATG
*
14614178 TTAAGGGC
258 TTAAGGGA
* *
14614186 AAATACGTAAATACACCGCATAAAGTGTGAGGAATCATTACCCTACTAGAGCAACAACAACTGGT
1 AAATACGTAAATACACCGCATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGT
* * * *
14614251 AAAAAAATATTAGAACAAGATTTGTAATGAAT-AGCGTGAAGGCACATATGTCTCGGACTAGAAT
66 AAAAAAATATTAGAACAAGATTTGTAATG-ATCAACGTGAAGGCACGTATGTCTCGGACTATAAA
* * * ** *
14614315 TCATGCTTGGACAACATTTGGCCTTAAGAAGTTATCAATACTTAATTTGACAGGTATAATTACAT
130 TCATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACTTAATTTCACTTGTATAATTACGT
* * * *
14614380 TCTTCTTCCCTCAAATTT-TAGTTGAACATGTG--AA-AAAAGGGAGGTTCCTTTAATATTATGT
195 TCTTCTTCCCTCAAATTTCGA-TTGAACATGTGAAAAGAAAAGGGAGGTTCCCTCAGTATTATGT
14614441 TAAGGGA
259 TAAGGGA
* * * * * *
14614448 AAATACATAAATACAACACATAAAGTATTTA-GAATCATTATCCTTCTAGAGCAAGAACAACTGG
1 AAATACGTAAATACACCGCATAAAGTA-TGAGGAATCATTACCCTTCTAGAGCAACAACAACTGG
* * * * * ** * **
14614512 T-AAAAAAGATTAGAATAAGAGTTT-TAATAATCAACGTGAAAGAATATATGTATCAAACTATAA
65 TAAAAAAATATTAGAACAAGA-TTTGTAATGATCAACGTGAAGGCACGTATGTCTCGGACTATAA
** * * * ** *
14614575 ATTGTGCTT-CAACAACATTT-GACTACAAGAAGTTATTAATACTTAATTTTACCGGTATAATTG
129 ATCATGCTTGC-ACAACATTTGGCCT-CAAGAAGTTATCAATACTTAATTTCACTTGTATAATTA
* * *
14614638 TGTTCTTCTTCCCTCAAATTTCGATTGAATATGTGAAAAGAAAAGGGAGGTTCCTTCAGTATTAT
192 CGTTCTTCTTCCCTCAAATTTCGATTGAACATGTGAAAAGAAAAGGGAGGTTCCCTCAGTATTAT
*
14614703 GTTAAGGAA
257 GTTAAGGGA
* * * * * * *
14614712 AAATATGTAAATACATCACATAAAGTATGAGGAATCATTACACTTGTGGAGCAACTACAACTGGT
1 AAATACGTAAATACACCGCATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGT
* ** *
14614777 AAAAAAATATTAGAACAAGATTTGTAATGATCAACTTGAAGGCACACATGTCTTGGACTATAAAT
66 AAAAAAATATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACGTATGTCTCGGACTATAAAT
* *
14614842 CATGCTTGCACAACATTTAGCCTCTAGAAGTTATCAATACTTAATTTCACTTG-AGTAATTACGT
131 CATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACTTAATTTCACTTGTA-TAATTACGT
* * * * *
14614906 TCTTCTTTCCTTAAATTTCGATTGAACGTGTGAAAA-AAAAGGAAGGTTCCCTTAGTATTATGTT
195 TCTTCTTCCCTCAAATTTCGATTGAACATGTGAAAAGAAAAGGGAGGTTCCCTCAGTATTATGTT
14614970 AAGGGA
260 AAGGGA
* * * * *
14614976 AAATACGTAAACACACTGCATAAAGTA-CATGGAATCATTACCCTTATGGAGCAGA-AACAA-TA
1 AAATACGTAAATACACCGCATAAAGTATGA-GGAATCATTACCCTTCTAGAGCA-ACAACAACT-
* * *
14615038 GG-GAAAAAA-ATTAGAACAAGATATGTAATGATCAACGTGAAGACACGTATGTCTCGGACTATA
63 GGTAAAAAAATATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACGTATGTCTCGGACTATA
* * *
14615101 AATCATGCTTGCACAATATTTGGCCTCAAGAAGTTATCAATACTTAATTTTTACTAGTATAATTA
128 AATCATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACTTAA-TTTCACTTGTATAATTA
* * * * * *
14615166 TGTTCTTCTTCCCTCAAATTTTGGTTGAACGTGTGAAAAGAAAAGGGAGGTTCCCTCATTATTGT
192 CGTTCTTCTTCCCTCAAATTTCGATTGAACATGTGAAAAGAAAAGGGAGGTTCCCTCAGTATTAT
*
14615231 GTTAAGAGA
257 GTTAAGGGA
*** * * * *
14615240 AAATATACAAATACACCACATAAAATATGAGGAATCTTTACCCTTC-AGAG---CAACAATTGGT
1 AAATACGTAAATACACCGCATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGT
* * * * **
14615301 AAAAAAAATATTTGAACAATG-TTTGTTATGATCAATGTGAAGGCACGT-TGTATTAGACTATAA
66 -AAAAAAATATTAGAACAA-GATTTGTAATGATCAACGTGAAGGCACGTATGTCTCGGACTATAA
* *
14615364 ATCATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACTTAATTTGA-TAGGTATAATTAC
129 ATCATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACTTAATTTCACT-TGTATAATTAC
* * * * * * *
14615428 GTTTTTCCTCCTTCAAA-TTCTGGTTGAACATGTGAAAA-ACAATGGGAGGTTCCCTTAATATTA
193 GTTCTTCTTCCCTCAAATTTC-GATTGAACATGTGAAAAGA-AAAGGGAGGTTCCCTCAGTATTA
* *
14615491 TGTTATGGGT
256 TGTTAAGGGA
* * * * *
14615501 GAAGACGTAAATACACCGCATAAAGCATTAGGAATCATTA-CC-TCTATG-G-AGCAACAACTGG
1 AAATACGTAAATACACCGCATAAAGTATGAGGAATCATTACCCTTCTA-GAGCAACAACAACTGG
* * * * * * *
14615562 T--AAAAAGATTAGAATAAGAGTTGTAATGATCAATGTGAAGGCACGCATGTCTTGAACTATAAA
65 TAAAAAAATATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACGTATGTCTCGGACTATAAA
* * ** * * * *
14615625 TCGTACTACCATAACATTTGACCTCAAGAAGTTATTAATACTTAATTTTACTTGTA
130 TCATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACTTAATTTCACTTGTA
14615681 ACACCCAAAA
Statistics
Matches: 1710, Mismatches: 272, Indels: 97
0.82 0.13 0.05
Matches are distributed among these distances:
258 1 0.00
259 39 0.02
260 78 0.05
261 223 0.13
262 251 0.15
263 98 0.06
264 232 0.14
265 315 0.18
266 250 0.15
267 222 0.13
268 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (265 bp):
AAATACGTAAATACACCGCATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGT
AAAAAAATATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACGTATGTCTCGGACTATAAAT
CATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACTTAATTTCACTTGTATAATTACGTT
CTTCTTCCCTCAAATTTCGATTGAACATGTGAAAAGAAAAGGGAGGTTCCCTCAGTATTATGTTA
AGGGA
Found at i:14614726 original size:526 final size:525
Alignment explanation
Indices: 14613395--14615680 Score: 2469
Period size: 526 Copynumber: 4.3 Consensus size: 525
14613385 CTCAAATATG
* * * *
14613395 TAAATACACCGCATAAAGTATGAGGAATCATTACTCTTCTAGACCAACAACAACTGGTAAGAAAA
1 TAAATACAACGCATAAAGTATTAGGAATCATTAC-CTTCTAGAGCAGCAACAACTGGTAA-AAAA
* * * * * *
14613460 TATTAGAACAAGATTTGTAATGATCAACATGAAGGCACGTATGTCTTGGACTATAAAACATGCTT
64 GATTAGAACAAGATTT-TAATGATCAACGTGAAAGAACGTATGTCTCGGACTATAAATCATGCTT
* * * * * *
14613525 GCACAACATTTGGCCTCAAGAAGTTATCAATACATAATTTCACCTGTGTAATTACATTTTTCTTC
128 GCACAACATTT-GACTCAAGAAGTTATCAATACTTAATTTTACCTGTATAATTACGTTCTTCTTC
* * * * *
14613590 CCTCAAATTTTGATTGAACGTGTGAAAA-ACAAAGTGAGGCTCCCTCAGTATTATGTTAAGCG-C
192 CCTCAAATTTCGATTGAACATGTGAAAAGA-AAAGGGAGGTTCCCTCAGTATTATGTTAAG-GAA
* ** * * * * * *
14613653 AAATACT-TAAACACACTGCATAAAGTATAAGGAACCATTACCCTTCTGGAGTAACAATAATTGG
255 AAATA-TGTAAATACACCACATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGG
14613717 TAAAAAAAATATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACATATGTCTCGGACTATAA
319 TAAAAAAAATATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACATATGTCTCGGACTATAA
* * * * *
14613782 ATCATGCTTGCACAACCTTTAGCCTCAAGAAGTTATCAATACTAAATTTCACATGTGTAATTATG
384 ATCATGCTTGCACAACATTTAGCCTCAAGAAGTTATCAATACTTAATTTCACAGGTATAATTACG
* * * * *
14613847 TTCTTCTTCCCTCAAATTTTAATTGAACGTGTGAAAAGCAAAGGAAGGTTCCCTCAGTATTATGA
449 TTCTTCTTCCCTCAAATTTTAGTTGAACATGTGAAAA--AAAGGAAGGTTCCCTTAATATTATGT
*
14613912 TAAGGGATAATA-A
512 TAAGGGAAAATACA
* * * *
14613925 GTAAACA-AACTGCATAAAGTATAAGGAATCACTAGCCTTCT-GAAGCAGCAACAATTGGTACAA
1 -TAAATACAAC-GCATAAAGTATTAGGAATCATTA-CCTTCTAG-AGCAGCAACAACTGGT--AA
** * *
14613988 AAAATGATTAGAACAAGATTTGTAATGAAAAACATG-AAGACACGTATGTCTCGGACTATAAAGC
60 AAAA-GATTAGAACAAGATTT-TAATGATCAACGTGAAAGA-ACGTATGTCTCGGACTATAAATC
* * *
14614052 ATGCTTGCACAACATTTGATCTCAAGAAGTTATCAATACTTAATTTGACTTGTGTAATTACGTTC
122 ATGCTTGCACAACATTTGA-CTCAAGAAGTTATCAATACTTAATTTTACCTGTATAATTACGTTC
* * * *
14614117 TTCTTCCCTCAAATTTCAATTGAACATGTGAAAAGTAAAGGGAGGTTCCCTAAGTATTATATTAA
186 TTCTTCCCTCAAATTTCGATTGAACATGTGAAAAGAAAAGGGAGGTTCCCTCAGTATTATGTTAA
** * * * *
14614182 GGGCAAATACGTAAATACACCGCATAAAGTGTGAGGAATCATTACCCTACTAGAGCAACAACAAC
251 GGAAAAATATGTAAATACACCACATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAAC
*
14614247 TGGT-AAAAAAATATTAGAACAAGATTTGTAATGAAT-AGCGTGAAGGCACATATGTCTCGGACT
316 TGGTAAAAAAAATATTAGAACAAGATTTGTAATG-ATCAACGTGAAGGCACATATGTCTCGGACT
* * * * * *
14614310 AGAATTCATGCTTGGACAACATTTGGCCTTAAGAAGTTATCAATACTTAATTTGACAGGTATAAT
380 ATAAATCATGCTTGCACAACATTTAGCCTCAAGAAGTTATCAATACTTAATTTCACAGGTATAAT
* * *
14614375 TACATTCTTCTTCCCTCAAATTTTAGTTGAACATGTG-AAAAAAGGGAGGTTCCTTTAATATTAT
445 TACGTTCTTCTTCCCTCAAATTTTAGTTGAACATGTGAAAAAAAGGAAGGTTCCCTTAATATTAT
14614439 GTTAAGGGAAAATACA
510 GTTAAGGGAAAATACA
*
14614455 TAAATACAACACATAAAGTATTTA-GAATCATTATCCTTCTAGAGCAAG-AACAACTGGTAAAAA
1 TAAATACAACGCATAAAGTA-TTAGGAATCATTA-CCTTCTAGAGC-AGCAACAACTGGTAAAAA
* * ** * ** **
14614518 AGATTAGAATAAGAGTTTTAATAATCAACGTGAAAGAATATATGTATCAAACTATAAATTGTGCT
63 AGATTAGAACAAGA-TTTTAATGATCAACGTGAAAGAACGTATGTCTCGGACTATAAATCATGCT
* * **
14614583 T-CAACAACATTTGACTACAAGAAGTTATTAATACTTAATTTTACCGGTATAATTGTGTTCTTCT
127 TGC-ACAACATTTGACT-CAAGAAGTTATCAATACTTAATTTTACCTGTATAATTACGTTCTTCT
* *
14614647 TCCCTCAAATTTCGATTGAATATGTGAAAAGAAAAGGGAGGTTCCTTCAGTATTATGTTAAGGAA
190 TCCCTCAAATTTCGATTGAACATGTGAAAAGAAAAGGGAGGTTCCCTCAGTATTATGTTAAGGAA
* * * * *
14614712 AAATATGTAAATACATCACATAAAGTATGAGGAATCATTACACTTGTGGAGCAACTACAACTGGT
255 AAATATGTAAATACACCACATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGT
* * *
14614777 -AAAAAAATATTAGAACAAGATTTGTAATGATCAACTTGAAGGCACACATGTCTTGGACTATAAA
320 AAAAAAAATATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACATATGTCTCGGACTATAAA
* **
14614841 TCATGCTTGCACAACATTTAGCCTCTAGAAGTTATCAATACTTAATTTCACTTG-AGTAATTACG
385 TCATGCTTGCACAACATTTAGCCTCAAGAAGTTATCAATACTTAATTTCACAGGTA-TAATTACG
* * * * *
14614905 TTCTTCTTTCCTTAAA-TTTCGATTGAACGTGTGAAAAAAAAGGAAGGTTCCCTTAGTATTATGT
449 TTCTTCTTCCCTCAAATTTTAG-TTGAACATGTG-AAAAAAAGGAAGGTTCCCTTAATATTATGT
*
14614969 TAAGGGAAAATACG
512 TAAGGGAAAATACA
* * * * * *
14614983 TAAACAC-ACTGCATAAAGTA-CATGGAATCATTACCCTTATGGAGCAGAAACAA-TAGGGAAAA
1 TAAATACAAC-GCATAAAGTATTA-GGAATCATTA-CCTTCTAGAGCAGCAACAACT-GGTAAAA
*
14615045 AA-ATTAGAACAAGATATGTAATGATCAACGTG-AAGACACGTATGTCTCGGACTATAAATCATG
62 AAGATTAGAACAAGAT-TTTAATGATCAACGTGAAAGA-ACGTATGTCTCGGACTATAAATCATG
* * *
14615108 CTTGCACAATATTTGGCCTCAAGAAGTTATCAATACTTAATTTTTA-CTAGTATAATTATGTTCT
125 CTTGCACAACATTT-GACTCAAGAAGTTATCAATACTTAA-TTTTACCT-GTATAATTACGTTCT
* * * * *
14615172 TCTTCCCTCAAATTTTGGTTGAACGTGTGAAAAGAAAAGGGAGGTTCCCTCATTATTGTGTTAA-
187 TCTTCCCTCAAATTTCGATTGAACATGTGAAAAGAAAAGGGAGGTTCCCTCAGTATTATGTTAAG
** * * *
14615236 GAGAAAATATACAAATACACCACATAAAATATGAGGAATCTTTACCCTTC-AGAG---CAACAAT
252 GA-AAAATATGTAAATACACCACATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAAC
* * * * * **
14615297 TGGTAAAAAAAATATTTGAACAATG-TTTGTTATGATCAATGTGAAGGCACGT-TGTATTAGACT
316 TGGTAAAAAAAATATTAGAACAA-GATTTGTAATGATCAACGTGAAGGCACATATGTCTCGGACT
* * *
14615360 ATAAATCATGCTTGCACAACATTTGGCCTCAAGAAGTTATCAATACTTAATTTGATAGGTATAAT
380 ATAAATCATGCTTGCACAACATTTAGCCTCAAGAAGTTATCAATACTTAATTTCACAGGTATAAT
* * * * * *
14615425 TACGTTTTTCCTCCTTCAAATTCTGGTTGAACATGTGAAAAACAATGGGAGGTTCCCTTAATATT
445 TACGTTCTTCTTCCCTCAAATTTTAGTTGAACATGTGAAAAA-AA-GGAAGGTTCCCTTAATATT
* ** * *
14615490 ATGTTATGGGTGAAGACG
508 ATGTTAAGGGAAAATACA
* *
14615508 TAAATACACCGCATAAAGCATTAGGAATCATTACC-TCTATG-G-AGCAACAACTGGT-AAAAAG
1 TAAATACAACGCATAAAGTATTAGGAATCATTACCTTCTA-GAGCAGCAACAACTGGTAAAAAAG
* * * * * * * * * * **
14615569 ATTAGAATAAGAGTTGTAATGATCAATGTGAAGGCACGCATGTCTTGAACTATAAATCGTACTAC
65 ATTAGAACAAGA-TTTTAATGATCAACGTGAAAGAACGTATGTCTCGGACTATAAATCATGCTTG
* * *
14615634 CATAACATTTGACCTCAAGAAGTTATTAATACTTAATTTTACTTGTA
129 CACAACATTTGA-CTCAAGAAGTTATCAATACTTAATTTTACCTGTA
14615681 ACACCCAAAA
Statistics
Matches: 1486, Mismatches: 216, Indels: 116
0.82 0.12 0.06
Matches are distributed among these distances:
521 14 0.01
522 89 0.06
523 12 0.01
524 105 0.07
525 109 0.07
526 349 0.23
527 99 0.07
528 205 0.14
529 72 0.05
530 12 0.01
531 47 0.03
532 152 0.10
533 221 0.15
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (525 bp):
TAAATACAACGCATAAAGTATTAGGAATCATTACCTTCTAGAGCAGCAACAACTGGTAAAAAAGA
TTAGAACAAGATTTTAATGATCAACGTGAAAGAACGTATGTCTCGGACTATAAATCATGCTTGCA
CAACATTTGACTCAAGAAGTTATCAATACTTAATTTTACCTGTATAATTACGTTCTTCTTCCCTC
AAATTTCGATTGAACATGTGAAAAGAAAAGGGAGGTTCCCTCAGTATTATGTTAAGGAAAAATAT
GTAAATACACCACATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGTAAAAAA
AATATTAGAACAAGATTTGTAATGATCAACGTGAAGGCACATATGTCTCGGACTATAAATCATGC
TTGCACAACATTTAGCCTCAAGAAGTTATCAATACTTAATTTCACAGGTATAATTACGTTCTTCT
TCCCTCAAATTTTAGTTGAACATGTGAAAAAAAGGAAGGTTCCCTTAATATTATGTTAAGGGAAA
ATACA
Found at i:14616838 original size:26 final size:26
Alignment explanation
Indices: 14616754--14616839 Score: 82
Period size: 26 Copynumber: 3.3 Consensus size: 26
14616744 AAGCTCAATT
* *
14616754 AGTATATAGCTCTTACGAGCCAATTC
1 AGTATATCGCTCTTACGAGCCAGTTC
* * * * *
14616780 AGCATACCACACTTACGAGCCAGTTT
1 AGTATATCGCTCTTACGAGCCAGTTC
* *
14616806 AGAATATCGCTCTTACGAGCCGGTTC
1 AGTATATCGCTCTTACGAGCCAGTTC
*
14616832 GGTATATC
1 AGTATATC
14616840 TCCAGCATCT
Statistics
Matches: 45, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
AGTATATCGCTCTTACGAGCCAGTTC
Found at i:14619531 original size:263 final size:263
Alignment explanation
Indices: 14618883--14619821 Score: 1043
Period size: 263 Copynumber: 3.6 Consensus size: 263
14618873 TCACAACATT
* * * * * * ** *
14618883 TACTTGATTTCACCTATGTAATTATGTTCTTCTTCCCGCAAACTTCGGTTGAATGTGTGAAAA-A
1 TACTTAATTTCACCTGTGTAATTATATTCTTCTTCGCTCAAATTTCGGTTGAACATGTGAAAAGC
** * * *
14618947 AAACTGAGGTTCCCTCAGTATTATGTTAAGGGAAAATATATAAACACATCGCATAAAGTAT-AAG
66 AAAGGGAGGTTCCCTCAGTATTATGTTAAGGGAAAATATGTAAACACACCGCATAAAGTATGATG
* * * * * **
14619011 CAATCATTACCCTTATGGAGCAACAACAATAGGTAAAAAAATATTAGAACCAA-ATTTATAATGA
131 -AATCATTACCCTTCTAGAGCAAGAACAAT-GGCAAAAAAACATTA-AAATAAGATTTATAATGA
* * ** * *
14619075 TCAACGTGAAGGCACGTTTGTCTCGTACTATAAATTATGCTCACACAATATTTGGCCTCAAGAAG
193 TCAACATGAAGGCACGTATGTCTCG-ACTATAAATCGTGCTTACACAACATTTGGCCTCAAGAAG
*
14619140 TTAGCAA
257 TTATCAA
* ** * * * *
14619147 TATTTAATTTCATATGTATAATTACATTCTTCTTC-CTTCAAATTTTGGTTGAACATGTGAAAAA
1 TACTTAATTTCACCTGTGTAATTATATTCTTCTTCGC-TCAAATTTCGGTTGAACATGTGAAAAG
* * *
14619211 CAAAGGGAGGTTCCTTCAGTATTATGTTAAGGGAAAATATGGAAATACACCGCATAAAGTATGAT
65 CAAAGGGAGGTTCCCTCAGTATTATGTTAAGGGAAAATATGTAAACACACCGCATAAAGTATGAT
14619276 GAATCATTACCCTTCTAGAGCAAGAACAACTGGCAAAAAAACATTAAAATAAGA-TTATAATGAT
130 GAATCATTACCCTTCTAGAGCAAGAACAA-TGGCAAAAAAACATTAAAATAAGATTTATAATGAT
* * * *
14619340 GAACATGAAGGCACGTATGTCTCAGACTATAAATCGTGCTTTCACAACATTTGGCCTAAAGCAGT
194 CAACATGAAGGCACGTATGTCTC-GACTATAAATCGTGCTTACACAACATTTGGCCTCAAGAAGT
14619405 TATCAA
258 TATCAA
* * * *
14619411 TACTTAATTTTACCTGTGTATTTATATTCTTCTTCGCTCAAA-TTCAGTTGAACGTGTGAAAAGC
1 TACTTAATTTCACCTGTGTAATTATATTCTTCTTCGCTCAAATTTCGGTTGAACATGTGAAAAGC
* * * ** **
14619475 AAAGGGAGGTTCCTTTAGCATTATGTTAAGGGAAAATATGTAAATTCACCGCATAAAGTACAATG
66 AAAGGGAGGTTCCCTCAGTATTATGTTAAGGGAAAATATGTAAACACACCGCATAAAGTATGATG
** * * * * *
14619540 AATCATTAGTCATCTAGAGCAAGAACAATTGGCAAAAAAAAAAGATTAGAATAAGATTTGTGATG
131 AATCATTACCCTTCTAGAGCAAGAACAA-TGGC---AAAAAAACATTAAAATAAGATTTATAATG
* * * * *
14619605 ATTAACATGAAGCCATGTATGTC-GGACTATAAATCGTGCTTCCACAACATTTGGCCTCAAGAAG
192 ATCAACATGAAGGCACGTATGTCTCGACTATAAATCGTGCTTACACAACATTTGGCCTCAAGAAG
14619669 TTATCAA
257 TTATCAA
* * *
14619676 TACTTAATTTCACTTGTGT-ATT-TA-TATTCTTCGCTCAAATTTTGGTTGAACATGTGAAAAGC
1 TACTTAATTTCACCTGTGTAATTATATTCTTCTTCGCTCAAATTTCGGTTGAACATGTGAAAAGC
* * * * *
14619738 AAAGGCAGGTTCCCTCAGTATTATGTTTAGGGCAAATACGTAAACACACCGCATAAAGTATGAGG
66 AAAGGGAGGTTCCCTCAGTATTATGTTAAGGGAAAATATGTAAACACACCGCATAAAGTATGATG
*
14619803 AATCATTACCCTTTTAGAG
131 AATCATTACCCTTCTAGAG
14619822 GTAGATATAA
Statistics
Matches: 568, Mismatches: 95, Indels: 25
0.83 0.14 0.04
Matches are distributed among these distances:
262 14 0.02
263 196 0.35
264 155 0.27
265 156 0.27
266 21 0.04
267 26 0.05
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (263 bp):
TACTTAATTTCACCTGTGTAATTATATTCTTCTTCGCTCAAATTTCGGTTGAACATGTGAAAAGC
AAAGGGAGGTTCCCTCAGTATTATGTTAAGGGAAAATATGTAAACACACCGCATAAAGTATGATG
AATCATTACCCTTCTAGAGCAAGAACAATGGCAAAAAAACATTAAAATAAGATTTATAATGATCA
ACATGAAGGCACGTATGTCTCGACTATAAATCGTGCTTACACAACATTTGGCCTCAAGAAGTTAT
CAA
Found at i:14620184 original size:32 final size:32
Alignment explanation
Indices: 14620135--14620222 Score: 122
Period size: 32 Copynumber: 2.8 Consensus size: 32
14620125 TGTTAATGAT
*
14620135 AGCTTGTTGGATATTGAAATTATTATGTTTTA
1 AGCTTGTTAGATATTGAAATTATTATGTTTTA
*
14620167 AGCTTGTTAGATGTTGAAATTATTATGTTTTA
1 AGCTTGTTAGATATTGAAATTATTATGTTTTA
* * * *
14620199 AGTTTATTGGATATTGGAATTATT
1 AGCTTGTTAGATATTGAAATTATT
14620223 GACAATGTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.50
Consensus pattern (32 bp):
AGCTTGTTAGATATTGAAATTATTATGTTTTA
Found at i:14621652 original size:13 final size:15
Alignment explanation
Indices: 14621625--14621658 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
14621615 AAAGTAAGTC
14621625 ATTTTCCAGAAAAT-
1 ATTTTCCAGAAAATA
14621639 ATTTTCCA-AAAATA
1 ATTTTCCAGAAAATA
14621653 ATTTTC
1 ATTTTC
14621659 AATCAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (15 bp):
ATTTTCCAGAAAATA
Found at i:14631649 original size:19 final size:19
Alignment explanation
Indices: 14631627--14631671 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14631617 TTATATTAGG
14631627 ATTTAATATTTAAGATGT-T
1 ATTTAATATTTAA-ATGTGT
* *
14631646 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATGTGT
14631665 ATTTAAT
1 ATTTAAT
14631672 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATGTGT
Found at i:14637162 original size:59 final size:59
Alignment explanation
Indices: 14637095--14637364 Score: 348
Period size: 59 Copynumber: 4.5 Consensus size: 59
14637085 GTAAATGAAA
14637095 AAGGTCCGATGACTATGTGTCATCGTGAGTATTAATGAAATGAATCCTTTACAGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATTAATGAAATGAATCCTTTACAGATTAT
14637154 AAGGTCCGATGACTATGTGTCATCGTGAGTATTAATGAAATGAATCCTTTACAGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATTAATGAAATGAATCCTTTACAGATTAT
* * *
14637213 AAGGTCCGATGACTATGTGTCATC-TGGAGAAATAAATGAAATGAATCCTTTACGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGT-GAG-TATTAATGAAATGAATCCTTTACAGATTAT
* * * * *
14637273 GAGGTCC-AGCGATTATATGTCATCGTGAGTATTTAATGAGAAATGAATCCTATTATAGATTA-
1 AAGGTCCGA-TGACTATGTGTCATCGTGAGTA-TTAAT--GAAATGAATCCT-TTACAGATTAT
* * * *
14637335 AAGGTCCGTTGACTCTATGTCATCATGAGT
1 AAGGTCCGATGACTATGTGTCATCGTGAGT
14637365 TACCAAATAC
Statistics
Matches: 185, Mismatches: 17, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
58 1 0.01
59 88 0.48
60 52 0.28
61 1 0.01
62 35 0.19
63 8 0.04
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (59 bp):
AAGGTCCGATGACTATGTGTCATCGTGAGTATTAATGAAATGAATCCTTTACAGATTAT
Found at i:14637305 original size:119 final size:120
Alignment explanation
Indices: 14637094--14637363 Score: 352
Period size: 119 Copynumber: 2.2 Consensus size: 120
14637084 CGTAAATGAA
* *
14637094 AAAGGTCCGATGACTATGTGTCATCGTGAGTATTAATGAAATGAATCCTTTACAGATTATAAGGT
1 AAAGGTCCGATGACTATGTGTCATCGTGAGAATAAATGAAATGAATCCTTTACAGATTATAAGGT
* *
14637159 CCGATGACTATGTGTCATCGTGAGTA-TTAAT-GAAATGAATCCT-TTACAGATT
66 CCGACGACTATATGTCATCGTGAGTATTTAATAGAAATGAATCCTATTACAGATT
* *
14637211 ATAAGGTCCGATGACTATGTGTCATC-TGGAGAAATAAATGAAATGAATCCTTTACGGATTATGA
1 A-AAGGTCCGATGACTATGTGTCATCGT-GAG-AATAAATGAAATGAATCCTTTACAGATTATAA
* *
14637275 GGTCC-AGCGATTATATGTCATCGTGAGTATTTAATGAGAAATGAATCCTATTATAGATT
63 GGTCCGA-CGACTATATGTCATCGTGAGTATTTAAT-AGAAATGAATCCTATTACAGATT
* * * *
14637334 AAAGGTCCGTTGACTCTATGTCATCATGAG
1 AAAGGTCCGATGACTATGTGTCATCGTGAG
14637364 TTACCAAATA
Statistics
Matches: 133, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
117 2 0.02
118 28 0.21
119 52 0.39
120 5 0.04
122 36 0.27
123 10 0.08
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.33
Consensus pattern (120 bp):
AAAGGTCCGATGACTATGTGTCATCGTGAGAATAAATGAAATGAATCCTTTACAGATTATAAGGT
CCGACGACTATATGTCATCGTGAGTATTTAATAGAAATGAATCCTATTACAGATT
Found at i:14640794 original size:18 final size:19
Alignment explanation
Indices: 14640758--14640801 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
14640748 GTTCATCCCA
14640758 AAACAAAACAAACAAAAAT
1 AAACAAAACAAACAAAAAT
**
14640777 AAAC-AAACAAACTCAAAT
1 AAACAAAACAAACAAAAAT
14640795 AAA-AAAA
1 AAACAAAA
14640802 TATTTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.77, C:0.16, G:0.00, T:0.07
Consensus pattern (19 bp):
AAACAAAACAAACAAAAAT
Found at i:14642199 original size:30 final size:30
Alignment explanation
Indices: 14642146--14642203 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
14642136 CTTCTTATAT
*
14642146 ATTTTATTTATTTTATTAGTTTTTTAATCA
1 ATTTTATTTATTATATTAGTTTTTTAATCA
*
14642176 ATTTATATTTA-TATATTATTTTTTTAAT
1 ATTT-TATTTATTATATTAGTTTTTTAAT
14642204 TATTCTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.76
31 6 0.24
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (30 bp):
ATTTTATTTATTATATTAGTTTTTTAATCA
Found at i:14647628 original size:42 final size:42
Alignment explanation
Indices: 14647337--14647628 Score: 311
Period size: 42 Copynumber: 6.9 Consensus size: 42
14647327 CAACTTTTAC
* ** *
14647337 CCAATCTTTTACCCCTAATCAAGAGGGGCAGATTGAAACCACCAC
1 CCAATCTTTTACCCCTAATCCAGAGGGGCAGATTG-AA--GTCAT
* * * *
14647382 CCAATCTTTTACCCTTAATCCAAAGAGGCAGATTG-AGCCCAT
1 CCAATCTTTTACCCCTAATCCAGAGGGGCAGATTGAAG-TCAT
* * *
14647424 CCAATATTTTACCCCTAATCCA-AGGGG-AAATTAAAGTCAT
1 CCAATCTTTTACCCCTAATCCAGAGGGGCAGATTGAAGTCAT
* * * * *
14647464 CTAGTCTTTTACCTCTAATCTAGAGGGGCAGATTGAAGCCAT
1 CCAATCTTTTACCCCTAATCCAGAGGGGCAGATTGAAGTCAT
* * *
14647506 CTAGTCTTTTACCCCTAATCAAGAGGGGCAGATTGAAGTCAT
1 CCAATCTTTTACCCCTAATCCAGAGGGGCAGATTGAAGTCAT
* * *
14647548 CCAGTCTTTTACCCCTAATCCAGAAGGGCAGAGTGAAGTCAT
1 CCAATCTTTTACCCCTAATCCAGAGGGGCAGATTGAAGTCAT
* *
14647590 CCAATATTTTACCCCTAATCTAGAGGGGCAGATTGAAGT
1 CCAATCTTTTACCCCTAATCCAGAGGGGCAGATTGAAGT
14647629 TACACACACA
Statistics
Matches: 211, Mismatches: 32, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
40 24 0.11
41 11 0.05
42 144 0.68
43 1 0.00
45 31 0.15
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (42 bp):
CCAATCTTTTACCCCTAATCCAGAGGGGCAGATTGAAGTCAT
Found at i:14648529 original size:5 final size:5
Alignment explanation
Indices: 14648504--14648546 Score: 50
Period size: 5 Copynumber: 8.2 Consensus size: 5
14648494 AATATATATA
* *
14648504 TATTT CATTT CATTT TATTT TATTTT CTATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TA-TTT -TATTT TATTT TATTT T
14648547 TTATTTCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 26 0.76
6 6 0.18
7 2 0.06
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (5 bp):
TATTT
Found at i:14648536 original size:12 final size:12
Alignment explanation
Indices: 14648519--14648552 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14648509 CATTTCATTT
*
14648519 TATTTTATTTTC
1 TATTTTATTTTA
14648531 TATTTTATTTTA
1 TATTTTATTTTA
*
14648543 TTTTTTATTT
1 TATTTTATTT
14648553 CAAAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (12 bp):
TATTTTATTTTA
Found at i:14648537 original size:17 final size:17
Alignment explanation
Indices: 14648511--14648552 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
14648501 ATATATTTCA
14648511 TTTC-ATTTTATTTTAT
1 TTTCTATTTTATTTTAT
14648527 TTTCTATTTTATTTTAT
1 TTTCTATTTTATTTTAT
*
14648544 TTTTTATTT
1 TTTCTATTT
14648553 CAAAAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTCTATTTTATTTTAT
Found at i:14648540 original size:22 final size:21
Alignment explanation
Indices: 14648506--14648546 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
14648496 TATATATATA
14648506 TTTCATTTCATTTTATTTTAT
1 TTTCATTTCATTTTATTTTAT
*
14648527 TTTCTATTTTATTTTATTTT
1 TTTC-ATTTCATTTTATTTT
14648547 TTATTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTCATTTCATTTTATTTTAT
Found at i:14649733 original size:25 final size:22
Alignment explanation
Indices: 14649698--14649748 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
14649688 CTTTTTTATT
14649698 TTTTATTTTTTAAAATTAAATCC
1 TTTTATTTTTT-AAATTAAATCC
* *
14649721 TTTTATGTCTTTTTAATTTAATCC
1 TTTTAT-T-TTTTAAATTAAATCC
14649745 TTTT
1 TTTT
14649749 TAAAATCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.25
24 14 0.58
25 4 0.17
ACGTcount: A:0.25, C:0.10, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTTATTTTTTAAATTAAATCC
Found at i:14653234 original size:25 final size:25
Alignment explanation
Indices: 14653196--14653279 Score: 98
Period size: 25 Copynumber: 3.3 Consensus size: 25
14653186 TAGCTCTAAT
*
14653196 GAGCCTAGACAGAATATCGCTCATGC
1 GAGCC-AGACAGAATATCGCTCATAC
* * *
14653222 TAGCCAGACAGAATATCGTTCTTAC
1 GAGCCAGACAGAATATCGCTCATAC
*
14653247 GAGCCAGACAGAA-ATACGCTCTTAC
1 GAGCCAGACAGAATAT-CGCTCATAC
14653272 GAGCCAGA
1 GAGCCAGA
14653280 ATCAAAATTA
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
24 2 0.04
25 45 0.88
26 4 0.08
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.19
Consensus pattern (25 bp):
GAGCCAGACAGAATATCGCTCATAC
Found at i:14653299 original size:27 final size:27
Alignment explanation
Indices: 14653241--14653313 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
14653231 AGAATATCGT
14653241 TCTTACGAGCCAG-A-CAGAAATACGC
1 TCTTACGAGCCAGAATCAGAAATACGC
14653266 TCTTACGAGCCAGAATCA-AAATTACGC
1 TCTTACGAGCCAGAATCAGAAA-TACGC
*
14653293 TCTTACGAGCCAAAATCAGAA
1 TCTTACGAGCCAGAATCAGAA
14653314 TGCCTTCTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
25 13 0.30
26 4 0.09
27 24 0.56
28 2 0.05
ACGTcount: A:0.38, C:0.26, G:0.16, T:0.19
Consensus pattern (27 bp):
TCTTACGAGCCAGAATCAGAAATACGC
Found at i:14659169 original size:25 final size:25
Alignment explanation
Indices: 14659140--14659192 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
14659130 ACTTAATTTA
14659140 CATTTATTGATTGAATGTAAATGAG
1 CATTTATTGATTGAATGTAAATGAG
14659165 CATTTATTGATTGAATGTAAATGAG
1 CATTTATTGATTGAATGTAAATGAG
14659190 CAT
1 CAT
14659193 ATAAATAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.40
Consensus pattern (25 bp):
CATTTATTGATTGAATGTAAATGAG
Found at i:14662372 original size:41 final size:41
Alignment explanation
Indices: 14662295--14662372 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
14662285 TTTTTTTAAA
** *
14662295 AAATATATTTTATATTTATAATTTCGGCCACGTATAATTTT
1 AAATATATTTTATACGTATAATTTCGGCCACATATAATTTT
*
14662336 AAATATATTTTATACGTATAATTT-GGATCACATATAA
1 AAATATATTTTATACGTATAATTTCGG-CCACATATAA
14662373 AATAGTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 2 0.06
41 30 0.94
ACGTcount: A:0.38, C:0.09, G:0.08, T:0.45
Consensus pattern (41 bp):
AAATATATTTTATACGTATAATTTCGGCCACATATAATTTT
Found at i:14662608 original size:15 final size:16
Alignment explanation
Indices: 14662576--14662608 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14662566 AAAAATAATC
*
14662576 ATTTGTCTTTTATTTA
1 ATTTCTCTTTTATTTA
14662592 ATTTCTCTTTT-TTTA
1 ATTTCTCTTTTATTTA
14662607 AT
1 AT
14662609 CTTCAAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.70
Consensus pattern (16 bp):
ATTTCTCTTTTATTTA
Found at i:14663283 original size:30 final size:31
Alignment explanation
Indices: 14663211--14663286 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
14663201 TTGGTCTAAT
* *
14663211 TTGATATCTAAACTTGATACTTTTATTTAAT
1 TTGATATTTAAACTTGATACTTTTATTTAAG
* *
14663242 TTGGTACTTAAACTTGATACTTTT-TTTAAG
1 TTGATATTTAAACTTGATACTTTTATTTAAG
14663272 TTGATATTTAAACTT
1 TTGATATTTAAACTT
14663287 TTGGGGGTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 18 0.46
31 21 0.54
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.51
Consensus pattern (31 bp):
TTGATATTTAAACTTGATACTTTTATTTAAG
Found at i:14663312 original size:89 final size:91
Alignment explanation
Indices: 14663149--14663337 Score: 208
Period size: 89 Copynumber: 2.1 Consensus size: 91
14663139 TTAATGTAAT
* * * * * *** *
14663149 ATTTGGTATTTGAATTTGATATATTTTTTTAATTTAATATTTAAATTATTTTTTGGTCTAATTTG
1 ATTTGGTACTTAAACTTGATATATTTTTTTAAGTTAATATTTAAACTATTTGGGGGTCAAATTTG
14663214 ATATCTAAACTTGA-TACTTTTAT-TTA
66 ATATCTAAACTTGACT-CTTTT-TCTTA
* *
14663240 ATTTGGTACTTAAACTTGATA-CTTTTTTTAAGTTGATATTTAAACT-TTTGGGGGTCAAATTTG
1 ATTTGGTACTTAAACTTGATATATTTTTTTAAGTTAATATTTAAACTATTTGGGGGTCAAATTTG
14663303 ATA-CTTAAACTTGACTCTTTTTCTTA
66 ATATC-TAAACTTGACTCTTTTTCTTA
*
14663329 ATTTAGTAC
1 ATTTGGTAC
14663338 CTAATTTTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
88 2 0.02
89 41 0.49
90 22 0.27
91 18 0.22
ACGTcount: A:0.29, C:0.08, G:0.11, T:0.52
Consensus pattern (91 bp):
ATTTGGTACTTAAACTTGATATATTTTTTTAAGTTAATATTTAAACTATTTGGGGGTCAAATTTG
ATATCTAAACTTGACTCTTTTTCTTA
Found at i:14663616 original size:59 final size:57
Alignment explanation
Indices: 14663553--14663666 Score: 138
Period size: 59 Copynumber: 2.0 Consensus size: 57
14663543 TTTAGGTGTC
* * * ** *
14663553 AAATTGGGTCAAAAAAAGTTTAGGTACCAAATAAAGAAAAAATGTCAAGTTCAAATACT
1 AAATTAGGTAAAAAAAAGTATAAATACCAAAT-AA-AAAAAATATCAAGTTCAAATACT
* *
14663612 AAATTAGGTAAAAAAAAGTATAAATACTAAATTAAAAAAATATCAAGTTCAAATA
1 AAATTAGGTAAAAAAAAGTATAAATACCAAATAAAAAAAATATCAAGTTCAAATA
14663667 TCCAATGTTA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
57 20 0.43
58 1 0.02
59 26 0.55
ACGTcount: A:0.56, C:0.08, G:0.11, T:0.25
Consensus pattern (57 bp):
AAATTAGGTAAAAAAAAGTATAAATACCAAATAAAAAAAATATCAAGTTCAAATACT
Found at i:14664126 original size:69 final size:69
Alignment explanation
Indices: 14664015--14664153 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
14664005 TTTATACTCA
*
14664015 ATGCGAGGAGCGAACCCTCACCCATACAAGGACATCGATTATTTAGTTACATTCTATAATGTGAG
1 ATGCGAGGAGCGAACCCTCACCCATACAAGAACATCGATTATTTAGTTACATTCTATAATGTGAG
14664080 TTGG
66 TTGG
14664084 ATGCGAGGAGCGAACCCTCACCCATACAAGAACATCGATTATTTAGTTACATTCTATAATGTGAG
1 ATGCGAGGAGCGAACCCTCACCCATACAAGAACATCGATTATTTAGTTACATTCTATAATGTGAG
14664149 TTGG
66 TTGG
14664153 A
1 A
14664154 ATATAAGTAT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (69 bp):
ATGCGAGGAGCGAACCCTCACCCATACAAGAACATCGATTATTTAGTTACATTCTATAATGTGAG
TTGG
Found at i:14664321 original size:14 final size:14
Alignment explanation
Indices: 14664286--14664318 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
14664276 ATCGAAAATA
*
14664286 AAATTATTTTTCTT
1 AAATAATTTTTCTT
14664300 AAATAATTTTT-TT
1 AAATAATTTTTCTT
14664313 AAATAA
1 AAATAA
14664319 ATTAATTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
AAATAATTTTTCTT
Found at i:14665161 original size:23 final size:21
Alignment explanation
Indices: 14665135--14665176 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 21
14665125 TAAATTTTAA
14665135 ATTTTCAAAAAAATATAAAAAAT
1 ATTTT-AAAAAAA-ATAAAAAAT
14665158 ATTTTAAAAAAAATAAAAA
1 ATTTTAAAAAAAATAAAAA
14665177 TCATTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 7 0.37
23 5 0.26
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
ATTTTAAAAAAAATAAAAAAT
Found at i:14665204 original size:20 final size:20
Alignment explanation
Indices: 14665181--14665218 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14665171 TAAAAATCAT
* *
14665181 TAAAATTATTAAAAAATTTA
1 TAAAAGTATAAAAAAATTTA
14665201 TAAAAGTATAAAAAAATT
1 TAAAAGTATAAAAAAATT
14665219 AAATATTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (20 bp):
TAAAAGTATAAAAAAATTTA
Found at i:14670306 original size:12 final size:12
Alignment explanation
Indices: 14670282--14670321 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
14670272 TATATAGTAA
14670282 TAATATGTTAATT
1 TAATAT-TTAATT
14670295 TAATATTTAATT
1 TAATATTTAATT
**
14670307 TTTTATTTAATT
1 TAATATTTAATT
14670319 TAA
1 TAA
14670322 ATAATTTTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
12 17 0.74
13 6 0.26
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (12 bp):
TAATATTTAATT
Found at i:14676182 original size:20 final size:21
Alignment explanation
Indices: 14676149--14676187 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
14676139 CAAGCTTCGA
* *
14676149 AACATCTTAGAAAATGTTTTG
1 AACATCTTAAAAAAAGTTTTG
14676170 AACA-CTTAAAAAAAGTTT
1 AACATCTTAAAAAAAGTTT
14676188 GGACAAAGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (21 bp):
AACATCTTAAAAAAAGTTTTG
Found at i:14679645 original size:17 final size:17
Alignment explanation
Indices: 14679620--14679660 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
14679610 TTTTAACAGG
14679620 TGAGCTCGCACACTTGA
1 TGAGCTCGCACACTTGA
* **
14679637 TGTGCTCGCAGTCTTGA
1 TGAGCTCGCACACTTGA
14679654 TGAGCTC
1 TGAGCTC
14679661 ACAGTCTTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.29
Consensus pattern (17 bp):
TGAGCTCGCACACTTGA
Found at i:14679665 original size:17 final size:17
Alignment explanation
Indices: 14679632--14679680 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
14679622 AGCTCGCACA
* *
14679632 CTTGATGTGCTCGCAGT
1 CTTGATGAGCTCACAGT
14679649 CTTGATGAGCTCACAGT
1 CTTGATGAGCTCACAGT
* *
14679666 CTTGGTAAGCTCACA
1 CTTGATGAGCTCACA
14679681 CACTTAGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (17 bp):
CTTGATGAGCTCACAGT
Found at i:14681955 original size:14 final size:14
Alignment explanation
Indices: 14681936--14681966 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
14681926 CGTGATCATT
14681936 AAAAAAAATTC-CA
1 AAAAAAAATTCTCA
14681949 AAAAAAAATTCTCA
1 AAAAAAAATTCTCA
14681963 AAAA
1 AAAA
14681967 TATAGTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.71, C:0.13, G:0.00, T:0.16
Consensus pattern (14 bp):
AAAAAAAATTCTCA
Found at i:14683368 original size:23 final size:23
Alignment explanation
Indices: 14683342--14683386 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14683332 TCTATTTTAG
*
14683342 TTATCTAATTATTAAAGTTTTTT
1 TTATCTAATCATTAAAGTTTTTT
* *
14683365 TTATTTAGTCATTAAAGTTTTT
1 TTATCTAATCATTAAAGTTTTT
14683387 GAAATTAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.29, C:0.04, G:0.07, T:0.60
Consensus pattern (23 bp):
TTATCTAATCATTAAAGTTTTTT
Found at i:14684740 original size:21 final size:21
Alignment explanation
Indices: 14684716--14684759 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14684706 GAATCTTTAG
*
14684716 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
14684737 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
14684758 TA
1 TA
14684760 GTTAGGTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:14685366 original size:14 final size:14
Alignment explanation
Indices: 14685347--14685373 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14685337 ATAAACACTT
14685347 TAATCATCAAACTC
1 TAATCATCAAACTC
14685361 TAATCATCAAACT
1 TAATCATCAAACT
14685374 AACATGCGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.30
Consensus pattern (14 bp):
TAATCATCAAACTC
Found at i:14689670 original size:21 final size:21
Alignment explanation
Indices: 14689646--14689688 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
14689636 TGAAAAGAAC
14689646 TTGTTAGATCAAACATAACTA
1 TTGTTAGATCAAACATAACTA
14689667 TTGTTAGATCAAACATAACTA
1 TTGTTAGATCAAACATAACTA
14689688 T
1 T
14689689 GTAAACTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (21 bp):
TTGTTAGATCAAACATAACTA
Found at i:14691492 original size:2 final size:2
Alignment explanation
Indices: 14691485--14691519 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
14691475 AAGAACTAAT
14691485 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
14691520 TATCAACTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:14693716 original size:343 final size:343
Alignment explanation
Indices: 14693090--14693778 Score: 1360
Period size: 343 Copynumber: 2.0 Consensus size: 343
14693080 TTCACTAAAA
14693090 TTCAAAAACCTTTATTTTTCTTCTTATTTTCTTTTAACATTCATATTTTTTTCTCAAAATTTTCT
1 TTCAAAAACCTTTATTTTTCTTCTTATTTTCTTTTAACATTCATATTTTTTTCTCAAAATTTTCT
14693155 GATTTTCTTACACTTTCTCCATTATTTTTACAAGATAGATTAACAATTTGGTTTTCCTTAAATTT
66 GATTTTCTTACACTTTCTCCATTATTTTTACAAGATAGATTAACAATTTGGTTTTCCTTAAATTT
*
14693220 ATTTATCATTGTGTTTTTAAATCTGTTTTTTTCAATAGATTATTAGAACATTTTTAAATATTTAT
131 ATTTACCATTGTGTTTTTAAATCTGTTTTTTTCAATAGATTATTAGAACATTTTTAAATATTTAT
14693285 AGGGTTCCAATGACTATAAATGAATGAGTGTAATTAATAAGTTAAAAAATTTAGTCATTGGTCAA
196 AGGGTTCCAATGACTATAAATGAATGAGTGTAATTAATAAGTTAAAAAATTTAGTCATTGGTCAA
14693350 GAGTTATATCAAGAGACATGAAAATTTTTATAAACAAGAATGAGATTTCATTTGAAAATCACAGT
261 GAGTTATATCAAGAGACATGAAAATTTTTATAAACAAGAATGAGATTTCATTTGAAAATCACAGT
14693415 AACAAGTTCTAAAATTCT
326 AACAAGTTCTAAAATTCT
14693433 TTCAAAAACCTTTATTTTTCTTCTTATTTTCTTTTAACATTCATATTTTTTTCTCAAAATTTTCT
1 TTCAAAAACCTTTATTTTTCTTCTTATTTTCTTTTAACATTCATATTTTTTTCTCAAAATTTTCT
14693498 GATTTTCTTACACTTTCTCCATTATTTTTACAAGATAGATTAACAATTTGGTTTTCCTTAAATTT
66 GATTTTCTTACACTTTCTCCATTATTTTTACAAGATAGATTAACAATTTGGTTTTCCTTAAATTT
14693563 ATTTACCATTGTGTTTTTAAATCTGTTTTTTTCAATAGATTATTAGAACATTTTTAAATATTTAT
131 ATTTACCATTGTGTTTTTAAATCTGTTTTTTTCAATAGATTATTAGAACATTTTTAAATATTTAT
*
14693628 AGGGTTCCAATGACTATAAATGAATGAGTGTAATTAATAAGTTAAAAAATTTGGTCATTGGTCAA
196 AGGGTTCCAATGACTATAAATGAATGAGTGTAATTAATAAGTTAAAAAATTTAGTCATTGGTCAA
14693693 GAGTTATATCAAGAGACATGAAAATTTTTATAAACAAGAATGAGATTTCATTTGAAAATCACAGT
261 GAGTTATATCAAGAGACATGAAAATTTTTATAAACAAGAATGAGATTTCATTTGAAAATCACAGT
14693758 AACAAGTTCTAAAATTCT
326 AACAAGTTCTAAAATTCT
14693776 TTC
1 TTC
14693779 TATCATTCCT
Statistics
Matches: 344, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
343 344 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.45
Consensus pattern (343 bp):
TTCAAAAACCTTTATTTTTCTTCTTATTTTCTTTTAACATTCATATTTTTTTCTCAAAATTTTCT
GATTTTCTTACACTTTCTCCATTATTTTTACAAGATAGATTAACAATTTGGTTTTCCTTAAATTT
ATTTACCATTGTGTTTTTAAATCTGTTTTTTTCAATAGATTATTAGAACATTTTTAAATATTTAT
AGGGTTCCAATGACTATAAATGAATGAGTGTAATTAATAAGTTAAAAAATTTAGTCATTGGTCAA
GAGTTATATCAAGAGACATGAAAATTTTTATAAACAAGAATGAGATTTCATTTGAAAATCACAGT
AACAAGTTCTAAAATTCT
Found at i:14697553 original size:14 final size:13
Alignment explanation
Indices: 14697516--14697544 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14697506 TCACAAATAA
14697516 TTTAAAAATTTAT
1 TTTAAAAATTTAT
14697529 TTTAAAAATTTAT
1 TTTAAAAATTTAT
14697542 TTT
1 TTT
14697545 TTAATATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTTAAAAATTTAT
Found at i:14699113 original size:142 final size:142
Alignment explanation
Indices: 14698857--14699139 Score: 494
Period size: 142 Copynumber: 2.0 Consensus size: 142
14698847 AATTTGCGCT
14698857 TTATCTAATAGTTGTACAATTCAAATTGTTGAATCAAATAATTCTCTAAGCAAGGCTTCGCAGAT
1 TTATCTAATAGTTGTACAATTCAAATTGTTGAATCAAATAATTCTCTAAGCAAGGCTTCGCAGAT
* * *
14698922 GTAAAACTGTTGTGTCTTAATCACATTAACAAATATTGTGTGTTATCTCTCCTTATTTTACTGCT
66 GTAAAACTGTTGTGTCTTAACCACATTAACAAATATTGCGTGTTATCTCTCCTTATTTTACTCCT
14698987 CGCGTTACTTTG
131 CGCGTTACTTTG
* * *
14698999 TTATCTAATAGTTGTACAATTCAAATTGTTGAATCAAATCATTCTTTAAGCAAGGTTTCGCAGAT
1 TTATCTAATAGTTGTACAATTCAAATTGTTGAATCAAATAATTCTCTAAGCAAGGCTTCGCAGAT
*
14699064 GTAAAATTGTTGTGTCTTAACCACATTAACAAATATTGCGTGTTATCTCTCCTTATTTTACTCCT
66 GTAAAACTGTTGTGTCTTAACCACATTAACAAATATTGCGTGTTATCTCTCCTTATTTTACTCCT
*
14699129 CGCTTTACTTT
131 CGCGTTACTTT
14699140 ATATTTAACT
Statistics
Matches: 133, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
142 133 1.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (142 bp):
TTATCTAATAGTTGTACAATTCAAATTGTTGAATCAAATAATTCTCTAAGCAAGGCTTCGCAGAT
GTAAAACTGTTGTGTCTTAACCACATTAACAAATATTGCGTGTTATCTCTCCTTATTTTACTCCT
CGCGTTACTTTG
Found at i:14702563 original size:31 final size:30
Alignment explanation
Indices: 14702512--14702587 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 30
14702502 TTTTTGGTTC
* *
14702512 AATTTGGTACTTAAATTTGACACTTTTTCCT
1 AATTTGATACTTAAAATTGACACTTTTT-CT
* *
14702543 AATTTGATACCTAAAATTGACACTTTTTTT
1 AATTTGATACTTAAAATTGACACTTTTTCT
*
14702573 AAGTTGATACTTAAA
1 AATTTGATACTTAAA
14702588 CTTTTTGGGG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 14 0.36
31 25 0.64
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (30 bp):
AATTTGATACTTAAAATTGACACTTTTTCT
Found at i:14704143 original size:15 final size:15
Alignment explanation
Indices: 14704120--14704149 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14704110 AACCCTTTTG
14704120 CAAAACAACAATGAA
1 CAAAACAACAATGAA
*
14704135 CAAATCAACAATGAA
1 CAAAACAACAATGAA
14704150 AATATTTACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.20, G:0.07, T:0.10
Consensus pattern (15 bp):
CAAAACAACAATGAA
Found at i:14708529 original size:29 final size:29
Alignment explanation
Indices: 14708497--14708557 Score: 90
Period size: 28 Copynumber: 2.1 Consensus size: 29
14708487 AAAATGAGAC
14708497 TTTTTGGA-TACCCGAGGGCAAAATGGTAA
1 TTTTTGGACT-CCCGAGGGCAAAATGGTAA
*
14708526 -TTTTGGACTCTCGAGGGCAAAATGGTAA
1 TTTTTGGACTCCCGAGGGCAAAATGGTAA
14708554 TTTT
1 TTTT
14708558 GGGAAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 25 0.86
29 4 0.14
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (29 bp):
TTTTTGGACTCCCGAGGGCAAAATGGTAA
Found at i:14708652 original size:58 final size:58
Alignment explanation
Indices: 14708590--14708737 Score: 176
Period size: 58 Copynumber: 2.6 Consensus size: 58
14708580 GAAATTTTAA
* * *
14708590 ACATCCAAGGGTAAAACGATAATTTTTAGAAAAATCGA-GATCAAAATA-GAATTTTTGG
1 ACATCCAGGGGTAAAATGGTAATTTTTAGAAAAAT-GAGGATCAAAA-ACGAATTTTTGG
** * * *
14708648 ACATCTGGGGGTAAAATGGTAATTTTTATAAGAATTAGGATCAAAAACGGAATTTTTGG
1 ACATCCAGGGGTAAAATGGTAATTTTTAGAAAAATGAGGATCAAAAAC-GAATTTTTGG
14708707 ACATCCAGGGGTAAAATGGTAATTTTT-GAAA
1 ACATCCAGGGGTAAAATGGTAATTTTTAGAAA
14708738 GTTTCGGGGT
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
57 2 0.03
58 38 0.51
59 35 0.47
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.30
Consensus pattern (58 bp):
ACATCCAGGGGTAAAATGGTAATTTTTAGAAAAATGAGGATCAAAAACGAATTTTTGG
Found at i:14708671 original size:29 final size:29
Alignment explanation
Indices: 14708639--14708855 Score: 148
Period size: 29 Copynumber: 7.4 Consensus size: 29
14708629 ATCAAAATAG
*
14708639 AATTTTTGGACATCTGGGGGT-AAAATGGT
1 AATTTTTGGA-ATCTAGGGGTAAAAATGGT
* * *
14708668 AATTTTTATAAGAAT-TA-GGATCAAAAACGG-
1 AA-TTTT-T-GGAATCTAGGGGT-AAAAATGGT
*
14708698 AATTTTTGGACATCCAGGGGT-AAAATGGT
1 AATTTTTGGA-ATCTAGGGGTAAAAATGGT
* * *
14708727 AATTTTTGAAAGTTTCGGGGTTAAAAATGG-
1 AATTTTTGGAA-TCTAGGGG-TAAAAATGGT
*
14708757 AATTTTTGGACATATAGGGGTAAAAAT-GT
1 AATTTTTGGA-ATCTAGGGGTAAAAATGGT
*
14708786 AATATTTT-GAAGTCTCGGGGTTAAAAATGG-
1 AAT-TTTTGGAA-TCTAGGGG-TAAAAATGGT
*
14708816 AATTTTTGGAAGTTTAGGGGTAAAAAT-GT
1 AATTTTTGGAA-TCTAGGGGTAAAAATGGT
14708845 AATTTTTGGAA
1 AATTTTTGGAA
14708856 GTTTTGAGGT
Statistics
Matches: 149, Mismatches: 19, Indels: 40
0.72 0.09 0.19
Matches are distributed among these distances:
27 2 0.01
28 13 0.09
29 64 0.43
30 50 0.34
31 18 0.12
32 2 0.01
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (29 bp):
AATTTTTGGAATCTAGGGGTAAAAATGGT
Found at i:14708721 original size:59 final size:57
Alignment explanation
Indices: 14708590--14708781 Score: 174
Period size: 59 Copynumber: 3.3 Consensus size: 57
14708580 GAAATTTTAA
* * * * *
14708590 ACATCCAAGGGTAAAACGATAATTTTTAGAA-AAATCGAGATCAAAATA-GAATTTTTGG
1 ACATCCAGGGGTAAAATGGTAATTTTTA-AAGAATTAG-GATCAAAA-AGGAATTTTTGG
**
14708648 ACATCTGGGGGTAAAATGGTAATTTTTATAAGAATTAGGATCAAAAACGGAATTTTTGG
1 ACATCCAGGGGTAAAATGGTAATTTTTA-AAGAATTAGGATCAAAAA-GGAATTTTTGG
* * * *
14708707 ACATCCAGGGGTAAAATGGTAATTTTTGAAAG-TTTCGGGGTTAAAAATGGAATTTTTGG
1 ACATCCAGGGGTAAAATGGTAATTTTT-AAAGAATT-AGGATCAAAAA-GGAATTTTTGG
**
14708766 ACATATAGGGGTAAAA
1 ACATCCAGGGGTAAAA
14708782 ATGTAATATT
Statistics
Matches: 112, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
57 1 0.01
58 35 0.31
59 75 0.67
60 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (57 bp):
ACATCCAGGGGTAAAATGGTAATTTTTAAAGAATTAGGATCAAAAAGGAATTTTTGG
Found at i:14708761 original size:30 final size:30
Alignment explanation
Indices: 14708719--14708895 Score: 157
Period size: 30 Copynumber: 5.9 Consensus size: 30
14708709 ATCCAGGGGT
14708719 AAAATGGTAATTTTTGAAAGTTTCGGGGTTA
1 AAAATGG-AATTTTTGAAAGTTTCGGGGTTA
* * *
14708750 AAAATGGAATTTTTGGACA-TATAGGGG-TA
1 AAAATGGAATTTTT-GAAAGTTTCGGGGTTA
* *
14708779 AAAATGTAATATTTTG-AAGTCTCGGGGTTA
1 AAAATGGAAT-TTTTGAAAGTTTCGGGGTTA
* *
14708809 AAAATGGAATTTTTGGAAGTTTAGGGG-TA
1 AAAATGGAATTTTTGAAAGTTTCGGGGTTA
* * * * *
14708838 AAAATGTAATTTTTGGAAGTTTTGAGGTTC
1 AAAATGGAATTTTTGAAAGTTTCGGGGTTA
*
14708868 AAAATCGAATTTTTGGAGAAG-TTCGGGG
1 AAAATGGAATTTTT-GA-AAGTTTCGGGG
14708896 GTCAAATATA
Statistics
Matches: 119, Mismatches: 19, Indels: 16
0.77 0.12 0.10
Matches are distributed among these distances:
28 1 0.01
29 49 0.41
30 50 0.42
31 16 0.13
32 3 0.03
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.36
Consensus pattern (30 bp):
AAAATGGAATTTTTGAAAGTTTCGGGGTTA
Found at i:14708788 original size:59 final size:59
Alignment explanation
Indices: 14708632--14708884 Score: 266
Period size: 59 Copynumber: 4.3 Consensus size: 59
14708622 AATCGAGATC
* * * * * *
14708632 AAAATAGAATTTTTGGACATCTGGGGGTAAAATGGTAATTTTT-ATAAGAATT-AGGATCA
1 AAAATGGAATTTTTGGACATCTAGGGGTAAAATGGTAATTTTTGA-AAG-TTTCGGGGTTA
* *
14708691 AAAACGGAATTTTTGGACATCCAGGGGTAAAATGGTAATTTTTGAAAGTTTCGGGGTTA
1 AAAATGGAATTTTTGGACATCTAGGGGTAAAATGGTAATTTTTGAAAGTTTCGGGGTTA
* *
14708750 AAAATGGAATTTTTGGACATATAGGGGTAAAAAT-GTAATATTTTG-AAGTCTCGGGGTTA
1 AAAATGGAATTTTTGGACATCTAGGGGT-AAAATGGTAAT-TTTTGAAAGTTTCGGGGTTA
* * * * *
14708809 AAAATGGAATTTTTGGA-AGTTTAGGGGTAAAAAT-GTAATTTTTGGAAGTTTTGAGGTTC
1 AAAATGGAATTTTTGGACA-TCTAGGGGT-AAAATGGTAATTTTTGAAAGTTTCGGGGTTA
*
14708868 AAAATCGAATTTTTGGA
1 AAAATGGAATTTTTGGA
14708885 GAAGTTCGGG
Statistics
Matches: 170, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
58 8 0.05
59 151 0.89
60 11 0.06
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (59 bp):
AAAATGGAATTTTTGGACATCTAGGGGTAAAATGGTAATTTTTGAAAGTTTCGGGGTTA
Found at i:14708856 original size:29 final size:29
Alignment explanation
Indices: 14708713--14708859 Score: 165
Period size: 29 Copynumber: 5.0 Consensus size: 29
14708703 TTGGACATCC
*
14708713 AGGGGT-AAAATGGTAATTTTTGAAAGTTT
1 AGGGGTAAAAAT-GTAATTTTTGGAAGTTT
* * *
14708742 CGGGGTTAAAAATGGAATTTTTGGACA-TAT
1 AGGGG-TAAAAATGTAATTTTTGGA-AGTTT
*
14708772 AGGGGTAAAAATGTAATATTTT-GAAGTCT
1 AGGGGTAAAAATGTAAT-TTTTGGAAGTTT
* *
14708801 CGGGGTTAAAAATGGAATTTTTGGAAGTTT
1 AGGGG-TAAAAATGTAATTTTTGGAAGTTT
14708831 AGGGGTAAAAATGTAATTTTTGGAAGTTT
1 AGGGGTAAAAATGTAATTTTTGGAAGTTT
14708860 TGAGGTTCAA
Statistics
Matches: 99, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
28 1 0.01
29 50 0.51
30 42 0.42
31 6 0.06
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (29 bp):
AGGGGTAAAAATGTAATTTTTGGAAGTTT
Found at i:14710932 original size:23 final size:23
Alignment explanation
Indices: 14710905--14710984 Score: 85
Period size: 23 Copynumber: 3.5 Consensus size: 23
14710895 TTACCATAAT
14710905 ATTAAATTTAAA-TTAAATTCAAA
1 ATTAAATTTAAATTTAAA-TCAAA
*
14710928 CTTAAA-TTAAATTTAAATCAAA
1 ATTAAATTTAAATTTAAATCAAA
*
14710950 AATAAATTTAAATTTAAAAT-AAA
1 ATTAAATTTAAATTT-AAATCAAA
* *
14710973 TTTGAATTTAAA
1 ATTAAATTTAAA
14710985 ATAAACTTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
22 14 0.29
23 30 0.62
24 4 0.08
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (23 bp):
ATTAAATTTAAATTTAAATCAAA
Found at i:14710955 original size:17 final size:17
Alignment explanation
Indices: 14710906--14711012 Score: 108
Period size: 17 Copynumber: 6.3 Consensus size: 17
14710896 TACCATAATA
*
14710906 TTAAATTTAAATTAAAT
1 TTAAATTTAAAATAAAT
* * *
14710923 TCAAACTTAAATTAAAT
1 TTAAATTTAAAATAAAT
**
14710940 TTAAATCAAAAATAAAT
1 TTAAATTTAAAATAAAT
14710957 TTAAATTTAAAATAAAT
1 TTAAATTTAAAATAAAT
* *
14710974 TTGAATTTAAAATAAAC
1 TTAAATTTAAAATAAAT
**
14710991 TT-AATTTCAAAGCAAAT
1 TTAAATTT-AAAATAAAT
14711008 TTAAA
1 TTAAA
14711013 ATGGTTTAGG
Statistics
Matches: 74, Mismatches: 14, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
16 5 0.07
17 67 0.91
18 2 0.03
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (17 bp):
TTAAATTTAAAATAAAT
Found at i:14710960 original size:28 final size:28
Alignment explanation
Indices: 14710905--14710963 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
14710895 TTACCATAAT
* *
14710905 ATTAAATTTAAATTAAATTCAAACTTAA
1 ATTAAATTTAAATAAAAATCAAACTTAA
*
14710933 ATTAAATTTAAATCAAAAAT-AAATTTAA
1 ATTAAATTTAAAT-AAAAATCAAACTTAA
14710961 ATT
1 ATT
14710964 TAAAATAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 23 0.85
29 4 0.15
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (28 bp):
ATTAAATTTAAATAAAAATCAAACTTAA
Found at i:14710969 original size:7 final size:6
Alignment explanation
Indices: 14710906--14710984 Score: 67
Period size: 6 Copynumber: 13.8 Consensus size: 6
14710896 TACCATAATA
* * * *
14710906 TTAAAT TTAAA- TTAAAT TCAAAC TTAAA- TTAAAT TTAAA- TCAAAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* * *
14710951 ATAAAT TTAAAT TTAAA- ATAAAT TTGAAT TTAAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAA
14710985 ATAAACTTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
5 18 0.32
6 39 0.68
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (6 bp):
TTAAAT
Found at i:14711552 original size:115 final size:114
Alignment explanation
Indices: 14711351--14711564 Score: 383
Period size: 115 Copynumber: 1.9 Consensus size: 114
14711341 GTTTCGTTGA
* * * *
14711351 CTTCGACCTGCTTCTCGGTGTCTTATCAGGAAGCTGGGTTCGAAGGTTTGCTCGCATTGAGCGTT
1 CTTCGACCCGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGCATTGAGCGTT
14711416 GAGTTGGTATACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTG
66 GAGTTGGTATACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTG
14711465 CTTCGACCCGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGAGCGT
1 CTTCGACCCGCTTCTCAGTGTCTCATCAGGAAGCT-GGGTTCGAAGATTTGCTCGCATTGAGCGT
14711530 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAG
65 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAG
14711565 ATGACCGCCT
Statistics
Matches: 95, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
114 32 0.34
115 63 0.66
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.34
Consensus pattern (114 bp):
CTTCGACCCGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGCATTGAGCGTT
GAGTTGGTATACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTG
Found at i:14712252 original size:206 final size:201
Alignment explanation
Indices: 14711426--14712260 Score: 1224
Period size: 201 Copynumber: 4.1 Consensus size: 201
14711416 GAGTTGGTAT
* *
14711426 ACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCCGCTTCTCAGTGTCTCAT
1 ACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCAT
*
14711491 CAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGAGCGTTGAGTTGGTATACTTCTCTGTATCTC
66 CAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGAGCGTTGAGTTGGTATACTTCTCAGTATCTC
* *
14711556 ATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTGTATCTTATTAGGAAGACGAATT
131 ATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACGAATT
14711621 TGGTCC
196 TGGTCC
* * * *
14711627 ATTTCTCTGTGTCTCATCAGGAAGCTAACCCTTTTATTGCTTCGACTTGCTTCTCAATGTCTCAT
1 ACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCAT
**
14711692 CAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGAATGTTGAGTTGGTATACTTCTCTA-TATCT
66 CAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGAGCGTTGAGTTGGTATACTTCTC-AGTATCT
* *
14711756 TATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACAAAT
130 CATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACGAAT
14711821 TTGGTCC
195 TTGGTCC
* ** *
14711828 ACTTCTCTGTGTCTTATCAGGAAGCTAACTC-TTTTATTGCTTTAACTTGCTTCTCAGTGTCTCA
1 ACTTCTCTGTGTCTCATCAGGAAGCTAAC-CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCA
* *
14711892 TCAGGAAGCTGGGGTTCGAAGATTTGCTCGTATTAAGCGTTGAGTTGGTATACTTCTCAGTATCT
65 TCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGAGCGTTGAGTTGGTATACTTCTCAGTATCT
* *
14711957 CATCAGGAAGATGACCGCCTCGCTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGATGAAT
130 CATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACGAAT
14712022 TTGGTCC
195 TTGGTCC
*
14712029 ACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCAT
1 ACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCAT
* * ** * * * *
14712094 CAAGAAGCTGGGGTTTGAAGATTTGCTCTTATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGT
66 CAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGAGC----G-TTGAGTTGGTATACTTCTCAGT
* * * ** * *
14712159 ATCTCATGAGGAAGATGATCGCATCGTTTGTTTCAATTCACTTCTCTATATCTCATCAGGAAGAC
126 ATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGAC
*
14712224 GAATTTGGTCT
191 GAATTTGGTCC
* * *
14712235 ACTTCTCAGTATCTCATCAAGAAGCT
1 ACTTCTCTGTGTCTCATCAGGAAGCT
14712261 GGGGTTCAAA
Statistics
Matches: 575, Mismatches: 50, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
200 2 0.00
201 461 0.80
202 1 0.00
205 1 0.00
206 110 0.19
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (201 bp):
ACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCAT
CAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGAGCGTTGAGTTGGTATACTTCTCAGTATCTC
ATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACGAATT
TGGTCC
Found at i:14712297 original size:359 final size:359
Alignment explanation
Indices: 14711877--14712619 Score: 1335
Period size: 359 Copynumber: 2.1 Consensus size: 359
14711867 CTTTAACTTG
* * *
14711877 CTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGTATTAAGCGTTGAGTTGGTA
1 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCAAAGATTTGCTCGCATTAAGCGTTGAGTTGGTA
14711942 TACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTCAATTCGCTTCTCTGTATCTC
66 TACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTCAATTCGCTTCTCTGTATCTC
*
14712007 ATCAGGAAGATGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTC
131 ATCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTC
*
14712072 GACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTTGAAGATTTGCTCTTATCGAGCGTGGGT
196 GACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCTTATCGAGCGTGGGT
*
14712137 TTGATTTGGTCTTCTTCTCAGTATCTCATGAGGAAGATGATC-GCATCGTTTGTTTCAATTCACT
261 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGA-CAGCATCGTTTGTTTCAATTCACT
*
14712201 TCTCTATATCTCATCAGGAAGACGAATTTGGTCTA
325 TCTCTATATCTCATCAGGAAGACGAATTTGGTCCA
*
14712236 CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCAAAGATTTGCTCGCATTAAGCGTTGAGTTGGTA
1 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCAAAGATTTGCTCGCATTAAGCGTTGAGTTGGTA
* *
14712301 TACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCGCTTGTTTCAATTCGCTTCTCTGTATCTC
66 TACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTCAATTCGCTTCTCTGTATCTC
* *
14712366 ATCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAGCCATTTTATTGCTTT
131 ATCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTC
*
14712431 GACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCTTATCGAGCGTGGGT
196 GACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCTTATCGAGCGTGGGT
*
14712496 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACAGCATCGTTTGTTTCAATTCGCTT
261 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACAGCATCGTTTGTTTCAATTCACTT
*
14712561 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCA
326 CTCTATATCTCATCAGGAAGACGAATTTGGTCCA
14712595 CTTCTCAGTATCTCATCAGGAAGCT
1 CTTCTCAGTATCTCATCAGGAAGCT
14712620 AACCATTTTA
Statistics
Matches: 367, Mismatches: 16, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
358 1 0.00
359 366 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (359 bp):
CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCAAAGATTTGCTCGCATTAAGCGTTGAGTTGGTA
TACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTCAATTCGCTTCTCTGTATCTC
ATCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTC
GACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCTTATCGAGCGTGGGT
TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACAGCATCGTTTGTTTCAATTCACTT
CTCTATATCTCATCAGGAAGACGAATTTGGTCCA
Found at i:14712364 original size:153 final size:155
Alignment explanation
Indices: 14712078--14712413 Score: 444
Period size: 153 Copynumber: 2.2 Consensus size: 155
14712068 CTTCGACCTG
** ** * *
14712078 CTTCTCAGTATCTCATCAAGAAGCTGGGGTTTGAAGATTTGCTCTTATCGAGCGTGGGTTTGATT
1 CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCAAAGATTTGCTCGCATCAAGC---GGTTTGAGT
* * * *
14712143 TGGTCTTCTTCTCAGTATCTCATGAGGAAGATGATCGCATCGTTTGTTTCAATTCACTTCTCTAT
63 TGGTATACTTCTCAGTATCTCATCAGGAAGATGATCGCATCGCTTGTTTCAATTCACTTCTCTAT
*
14712208 ATCTCATCAGGAAGACGAATTTGGTCTA
128 ATCTCATCAGGAAGACGAATTTGGTCCA
*
14712236 CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCAAAGATTTGCTCGCATTAAGC-G-TTGAGTTGG
1 CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCAAAGATTTGCTCGCATCAAGCGGTTTGAGTTGG
* * * *
14712299 TATACTTCTCTGTATCTCATCAGGAAGATGA-CTGCCTCGCTTGTTTCAATTCGCTTCTCTGTAT
66 TATACTTCTCAGTATCTCATCAGGAAGATGATC-GCATCGCTTGTTTCAATTCACTTCTCTATAT
14712363 CTCATCAGGAAGACGAATTTGGTCCA
130 CTCATCAGGAAGACGAATTTGGTCCA
* * *
14712389 CTTCTCTGTGTCTCATCAGGAAGCT
1 CTTCTCAGTATCTCATCAAGAAGCT
14712414 AGCCATTTTA
Statistics
Matches: 158, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
152 1 0.01
153 109 0.69
154 1 0.01
158 47 0.30
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (155 bp):
CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCAAAGATTTGCTCGCATCAAGCGGTTTGAGTTGG
TATACTTCTCAGTATCTCATCAGGAAGATGATCGCATCGCTTGTTTCAATTCACTTCTCTATATC
TCATCAGGAAGACGAATTTGGTCCA
Found at i:14712565 original size:206 final size:201
Alignment explanation
Indices: 14712236--14712755 Score: 716
Period size: 206 Copynumber: 2.6 Consensus size: 201
14712226 ATTTGGTCTA
* * *
14712236 CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCAAAGATTTGCTCGCATTAAGCGTTGAGTTGGTA
1 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATCAAGCGTTGAGTTGGTA
* * *
14712301 TACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCGCTTGTTTCAATTCGCTTCTCTGTATCTC
66 TACTTCTCAGTATCTCATCAGGAAGATGACAGCATCGCTTGTTTCAATTCGCTTCTCTGTATCTC
* * * *
14712366 ATCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAGCCATTTTATTGCTTT
131 ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
14712431 GACCTG
196 GACCTG
** * *
14712437 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCTTATCGAGCGTGGGTTTGATT
1 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATCAAGC----G-TTGAGT
* * *
14712502 TGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACAGCATCGTTTGTTTCAATTCGCTTCTCTGT
61 TGGTATACTTCTCAGTATCTCATCAGGAAGATGACAGCATCGCTTGTTTCAATTCGCTTCTCTGT
14712567 ATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATT
126 ATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATT
14712632 GCTTCGACCTG
191 GCTTCGACCTG
* * * * * ** *
14712643 GTTCTTAGTATCTCATCAGGAAGCTGAGGTTCGAAGATTTGCTCACTTTGAGCCTTGAGTTGGTA
1 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATCAAGCGTTGAGTTGGTA
** ** * *
14712708 TACTTCTGTGTATCTCATCAGGAAGATGATTGCCTCACTTGTTTCAAT
66 TACTTCTCAGTATCTCATCAGGAAGATGACAGCATCGCTTGTTTCAAT
14712756 AATCGCAATC
Statistics
Matches: 279, Mismatches: 35, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
201 96 0.34
205 1 0.00
206 182 0.65
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (201 bp):
CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATCAAGCGTTGAGTTGGTA
TACTTCTCAGTATCTCATCAGGAAGATGACAGCATCGCTTGTTTCAATTCGCTTCTCTGTATCTC
ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
GACCTG
Found at i:14712735 original size:560 final size:556
Alignment explanation
Indices: 14711676--14712755 Score: 1621
Period size: 560 Copynumber: 1.9 Consensus size: 556
14711666 CTTCGACTTG
* * * *
14711676 CTTCTCAATGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGAATGTTGAGTTGGTA
1 CTTCTCAATATCTCATCAAGAAGCTGGGGTTCAAAGATTTGCTCGCATTGAACGTTGAGTTGGTA
*
14711741 TACTTCTCTATATCTTATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTGTATCTC
66 TACTTCTCTATATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTGTATCTC
*
14711806 ATCAGGAAGACAAATTTGGTCCACTTCTCTGTGTCTTATCAGGAAGCTAACTCTTTTATTGCTTT
131 ATCAGGAAGACAAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACTCTTTTATTGCTTT
* * *
14711871 AACTTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGTATTAAGCGTTGAG
196 AACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGTATCAAGCGTTGAG
* *
14711936 TTGGTATACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTCAATTCGCTTCTCTG
261 TTGGTATACTTCTCAGTATCTCATCAGGAAGATGACAGCATCGCTTGTTTCAATTCGCTTCTCTG
* * *
14712001 TATCTCATCAGGAAGATGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTAT
326 TATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTAT
* *
14712066 TGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTTGAAGATTTGCTCTTATCGAGC
391 TGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTGAGGTTCGAAGATTTGCTCTTATCGAGC
* * * * * **
14712131 GTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATGAGGAAGATGATCGCATCGTTTGTTTCAAT
456 ----GCTTGAGTTGGTATACTTCTCAGTATCTCATCAGGAAGATGATCGCATCACTTGTTTCAAT
14712196 TCACTTCTCTATATCTCATCAGGAAGACGAATTTGGTCTA
517 TCACTTCTCTATATCTCATCAGGAAGACGAATTTGGTCTA
*
14712236 CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCAAAGATTTGCTCGCATT-AAGCGTTGAGTTGGT
1 CTTCTCAATATCTCATCAAGAAGCTGGGGTTCAAAGATTTGCTCGCATTGAA-CGTTGAGTTGGT
* * *
14712300 ATACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCGCTTGTTTCAATTCGCTTCTCTGTATCT
65 ATACTTCTCTATATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTGTATCT
* *
14712365 CATCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAGC-CATTTTATTGCT
130 CATCAGGAAGACAAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACTC-TTTTATTGCT
* * *
14712429 TTGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCTTATCGAGCGTGG
194 TTAACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGTATCAAGC----
* * * *
14712494 GTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACAGCATCGTTTGTTTCAATTCGC
255 G-TTGAGTTGGTATACTTCTCAGTATCTCATCAGGAAGATGACAGCATCGCTTGTTTCAATTCGC
14712559 TTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACC
319 TTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACC
* * *
14712624 ATTTTATTGCTTCGACCTGGTTCTTAGTATCTCATCAGGAAGCTGAGGTTCGAAGATTTGCTCAC
384 ATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTGAGGTTCGAAGATTTGCT--C
** * *
14712689 TT-T-GAGC-CTTGAGTTGGTATACTTCTGTGTATCTCATCAGGAAGATGATTGCCTCACTTGTT
447 TTATCGAGCGCTTGAGTTGGTATACTTCTCAGTATCTCATCAGGAAGATGATCGCATCACTTGTT
14712751 TCAAT
512 TCAAT
14712756 AATCGCAATC
Statistics
Matches: 468, Mismatches: 43, Indels: 18
0.88 0.08 0.03
Matches are distributed among these distances:
559 3 0.01
560 280 0.60
564 1 0.00
565 180 0.38
566 1 0.00
567 3 0.01
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (556 bp):
CTTCTCAATATCTCATCAAGAAGCTGGGGTTCAAAGATTTGCTCGCATTGAACGTTGAGTTGGTA
TACTTCTCTATATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTGTATCTC
ATCAGGAAGACAAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACTCTTTTATTGCTTT
AACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGTATCAAGCGTTGAG
TTGGTATACTTCTCAGTATCTCATCAGGAAGATGACAGCATCGCTTGTTTCAATTCGCTTCTCTG
TATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTAT
TGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTGAGGTTCGAAGATTTGCTCTTATCGAGC
GCTTGAGTTGGTATACTTCTCAGTATCTCATCAGGAAGATGATCGCATCACTTGTTTCAATTCAC
TTCTCTATATCTCATCAGGAAGACGAATTTGGTCTA
Found at i:14713324 original size:50 final size:50
Alignment explanation
Indices: 14713261--14713357 Score: 142
Period size: 50 Copynumber: 1.9 Consensus size: 50
14713251 TCATGTCTTC
*
14713261 GTAGTATTGGGTCCGTCGTCACG-GCTTAGACCTTTCCCTTTTGTCTTTTT
1 GTAGTACTGGGTCCGTCGTCACGAGCTTAGACCTTTCCC-TTTGTCTTTTT
* * *
14713311 GTAGTACTGGGTCCGTCGTCGCGATCTTAGATCTTTCCCTTTGTCTT
1 GTAGTACTGGGTCCGTCGTCACGAGCTTAGACCTTTCCCTTTGTCTT
14713358 CACGGTACTG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 29 0.69
51 13 0.31
ACGTcount: A:0.10, C:0.25, G:0.23, T:0.42
Consensus pattern (50 bp):
GTAGTACTGGGTCCGTCGTCACGAGCTTAGACCTTTCCCTTTGTCTTTTT
Found at i:14714342 original size:13 final size:13
Alignment explanation
Indices: 14714324--14714361 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
14714314 CTTTTTCTAA
14714324 TTCTTTCTTTTTT
1 TTCTTTCTTTTTT
*
14714337 TTCTTTTTTTTTT
1 TTCTTTCTTTTTT
14714350 TTCTTTTCTTTT
1 TTC-TTTCTTTT
14714362 ATTCAGTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (13 bp):
TTCTTTCTTTTTT
Found at i:14719623 original size:96 final size:96
Alignment explanation
Indices: 14719439--14719630 Score: 212
Period size: 96 Copynumber: 2.0 Consensus size: 96
14719429 AATTTTAGGA
* * *
14719439 AAGGATATTCGATTATCTCGATTTAAAGAAATGTTGCACCTAGTGAGTTAAGGCGTAAATTTTTA
1 AAGGATATTCGATTATCTCAATTTAAAGAAATATTGCACCTAGTGAGTTAAGGCGTAAATTTTCA
* * *
14719504 GAATCGGAGATAAGGAAACATTGCCTCGATT
66 AAATCGGAAATAAAGAAACATTGCCTCGATT
* * * *
14719535 AAGGGTATTCGATTATTTCAATTTGAAGAAATATTGTACCTAGTGAGTTAA-G-GTACAATATTT
1 AAGGATATTCGATTATCTCAATTTAAAGAAATATTGCACCTAGTGAGTTAAGGCGTA-AAT-TTT
* *
14719598 CAAAACTC-GAAATAAA-AGAATATTGCCTTGATT
64 CAAAA-TCGGAAATAAAGA-AACATTGCCTCGATT
14719631 TTAAAGTTTT
Statistics
Matches: 80, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
94 3 0.04
95 5 0.06
96 70 0.88
97 2 0.03
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.33
Consensus pattern (96 bp):
AAGGATATTCGATTATCTCAATTTAAAGAAATATTGCACCTAGTGAGTTAAGGCGTAAATTTTCA
AAATCGGAAATAAAGAAACATTGCCTCGATT
Found at i:14719991 original size:116 final size:117
Alignment explanation
Indices: 14719839--14720089 Score: 287
Period size: 116 Copynumber: 2.1 Consensus size: 117
14719829 TCGAAGTTTG
* * * *
14719839 AAAATGAGACTTTTTGGATACTCGGGGGTAAAATGGT-AATTTTGGGAAAATTTAGGGTTAAAAA
1 AAAATG-GAATTTTTGGATACTCGGGGGTAAAATGGTAAATTTT-AGAAAAATTA-GGATAAAAA
*
14719903 TGAAA-TTTTAGACATCCAAGGGTAAAACGGTAATTTTTAGAAA-AATCGGGAT-A
63 TAAAATTTTTAGACATCCAAGGGTAAAACGGTAATTTTT-GAAAGAATCGGGATCA
* *
14719956 AAAATGGAATTTTTGGA-CCTCCGGGGGTAAAATGGTAAATTTTAGAAAAATTAGGATCAAAATA
1 AAAATGGAATTTTTGGATACT-CGGGGGTAAAATGGTAAATTTTAGAAAAATTAGGATAAAAATA
* * * * **
14720020 AAATTTTTGGACATCTAGGGGTAAAATGGTAATTTTTGAAAGTTTCGGGATCA
65 AAATTTTTAGACATCCAAGGGTAAAACGGTAATTTTTGAAAGAATCGGGATCA
* *
14720073 AAAATGTATTTTTTGGA
1 AAAATGGAATTTTTGGA
14720090 AGTTCGAGGG
Statistics
Matches: 114, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
115 17 0.15
116 69 0.61
117 28 0.25
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (117 bp):
AAAATGGAATTTTTGGATACTCGGGGGTAAAATGGTAAATTTTAGAAAAATTAGGATAAAAATAA
AATTTTTAGACATCCAAGGGTAAAACGGTAATTTTTGAAAGAATCGGGATCA
Found at i:14720054 original size:29 final size:29
Alignment explanation
Indices: 14719863--14720057 Score: 78
Period size: 29 Copynumber: 6.7 Consensus size: 29
14719853 TGGATACTCG
* *
14719863 GGGGTAAAATGGTAATTTTGGGAAAATTTA
1 GGGGTAAAATGGTAATTTTTGG-AAATCTA
* * * * *
14719893 GGGTTAAAAAT-G-AAATTTTAGACATCCA
1 GGGGT-AAAATGGTAATTTTTGGAAATCTA
* * * ** *
14719921 AGGGTAAAACGGTAATTTTTAGAAAAATC
1 GGGGTAAAATGGTAATTTTTGGAAATCTA
* ** **
14719950 GGGATAAAAATGG-AATTTTTGGACCTCCG
1 GGGGT-AAAATGGTAATTTTTGGAAATCTA
* *
14719979 GGGGTAAAATGGTAAATTTTAGAAAAAT-TA
1 GGGGTAAAATGGT-AATTTTTG-GAAATCTA
* ** *
14720009 -GGATCAAAAT-AAAATTTTTGGACATCTA
1 GGGGT-AAAATGGTAATTTTTGGAAATCTA
14720037 GGGGTAAAATGGTAATTTTTG
1 GGGGTAAAATGGTAATTTTTG
14720058 AAAGTTTCGG
Statistics
Matches: 112, Mismatches: 42, Indels: 23
0.63 0.24 0.13
Matches are distributed among these distances:
27 7 0.06
28 29 0.26
29 46 0.41
30 23 0.21
31 7 0.06
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (29 bp):
GGGGTAAAATGGTAATTTTTGGAAATCTA
Found at i:14720084 original size:58 final size:59
Alignment explanation
Indices: 14719863--14720148 Score: 225
Period size: 58 Copynumber: 4.9 Consensus size: 59
14719853 TGGATACTCG
* * * * *
14719863 GGGGTAAAATGGTAATTTTGGGAAAATTTAGGG-TTAAAAAT-GAAATTTTAGACATCCA
1 GGGGTAAAATGGTAATTTT-TGAAAATTTCGGGATCAAAAATAGAATTTTTGGACATCCA
* * * * * *
14719921 AGGGTAAAACGGTAATTTTTAGAAAA-ATCGGGAT-AAAAATGGAATTTTTGGACCTCCG
1 GGGGTAAAATGGTAATTTTT-GAAAATTTCGGGATCAAAAATAGAATTTTTGGACATCCA
* * * * *
14719979 GGGGTAAAATGGTAAATTTTAGAAAAATT-AGGATC-AAAATAAAATTTTTGGACATCTA
1 GGGGTAAAATGGT-AATTTTTGAAAATTTCGGGATCAAAAATAGAATTTTTGGACATCCA
* * *
14720037 GGGGTAAAATGGTAATTTTTGAAAGTTTCGGGATCAAAAAT-GTATTTTTTGGA-AGTTC-
1 GGGGTAAAATGGTAATTTTTGAAAATTTCGGGATCAAAAATAG-AATTTTTGGACA-TCCA
* * *
14720095 GAGGGTAAAAAT-GTAATTTTTGGAAGTTTCGGGGTCAAAAATCA-AATTTTTGGA
1 G-GGGT-AAAATGGTAATTTTTGAAAATTTCGGGATCAAAAAT-AGAATTTTTGGA
14720149 AGTTTGAGGG
Statistics
Matches: 184, Mismatches: 30, Indels: 27
0.76 0.12 0.11
Matches are distributed among these distances:
57 22 0.12
58 94 0.51
59 63 0.34
60 5 0.03
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (59 bp):
GGGGTAAAATGGTAATTTTTGAAAATTTCGGGATCAAAAATAGAATTTTTGGACATCCA
Found at i:14720087 original size:30 final size:30
Alignment explanation
Indices: 14720042--14720218 Score: 175
Period size: 30 Copynumber: 5.9 Consensus size: 30
14720032 ATCTAGGGGT
* *
14720042 AAAATGGTAATTTTTGAAAGTTTCGGGATCA
1 AAAAT-GTAATTTTTGGAAGTTTCGGGGTCA
*
14720073 AAAATGTATTTTTTGGAAG-TTCGAGGGT-A
1 AAAATGTAATTTTTGGAAGTTTCG-GGGTCA
14720102 AAAATGTAATTTTTGGAAGTTTCGGGGTCA
1 AAAATGTAATTTTTGGAAGTTTCGGGGTCA
**
14720132 AAAATCAAATTTTTGGAAGTTT-GAGGGT-A
1 AAAATGTAATTTTTGGAAGTTTCG-GGGTCA
* ***
14720161 AAAATGTAATTTTTAGAAGTTTTAAGGTCA
1 AAAATGTAATTTTTGGAAGTTTCGGGGTCA
**
14720191 AAAATCAAATTTTTGTAGAAG-TTCGGGG
1 AAAATGTAATTTTTG--GAAGTTTCGGGG
14720219 GCCAAAATAC
Statistics
Matches: 121, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
29 51 0.42
30 57 0.47
31 9 0.07
32 4 0.03
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (30 bp):
AAAATGTAATTTTTGGAAGTTTCGGGGTCA
Found at i:14720111 original size:59 final size:59
Alignment explanation
Indices: 14720009--14720215 Score: 219
Period size: 59 Copynumber: 3.5 Consensus size: 59
14719999 AGAAAAATTA
* *
14720009 GGATC-AAAATAAAATTTTTGGACA--TCTAGGGGT-AAAATGGTAATTTTTGAAAGTTTCG
1 GGATCAAAAATCAAATTTTTGGA-AGTTCGA-GGGTAAAAAT-GTAATTTTTGAAAGTTTCG
** * *
14720067 GGATCAAAAATGTATTTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTGGAAGTTTCG
1 GGATCAAAAATCAAATTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTGAAAGTTTCG
* * **
14720126 GGGTCAAAAATCAAATTTTTGGAAGTTTGAGGGTAAAAATGTAATTTTT-AGAAGTTTTAA
1 GGATCAAAAATCAAATTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTGA-AAG-TTTCG
14720186 GG-TCAAAAATCAAATTTTTGTAGAAGTTCG
1 GGATCAAAAATCAAATTTTTG--GAAGTTCG
14720216 GGGGCCAAAA
Statistics
Matches: 127, Mismatches: 14, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
58 6 0.05
59 101 0.80
60 13 0.10
61 7 0.06
ACGTcount: A:0.36, C:0.06, G:0.23, T:0.36
Consensus pattern (59 bp):
GGATCAAAAATCAAATTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTGAAAGTTTCG
Found at i:14722276 original size:11 final size:11
Alignment explanation
Indices: 14722260--14722350 Score: 67
Period size: 11 Copynumber: 8.1 Consensus size: 11
14722250 TTACCATAAT
14722260 ATTAAATTTAA
1 ATTAAATTTAA
14722271 ATTAAATTTAA
1 ATTAAATTTAA
* **
14722282 ATCAAAAATAA
1 ATTAAATTTAA
14722293 ATTTAAATTTAA
1 A-TTAAATTTAA
*
14722305 AATAAATTTGAA
1 ATTAAATTT-AA
* *
14722317 TTTAAA-ATAA
1 ATTAAATTTAA
*
14722327 ACTTAATTTTAA
1 A-TTAAATTTAA
**
14722339 AACAAATTTAA
1 ATTAAATTTAA
14722350 A
1 A
14722351 ATGGTTTGGA
Statistics
Matches: 60, Mismatches: 16, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
10 2 0.03
11 40 0.67
12 18 0.30
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:14722281 original size:17 final size:17
Alignment explanation
Indices: 14722261--14722350 Score: 117
Period size: 17 Copynumber: 5.3 Consensus size: 17
14722251 TACCATAATA
*
14722261 TTAAATTTAAATTAAAT
1 TTAAATTTAAAATAAAT
**
14722278 TTAAATCAAAAATAAAT
1 TTAAATTTAAAATAAAT
14722295 TTAAATTTAAAATAAAT
1 TTAAATTTAAAATAAAT
* *
14722312 TTGAATTTAAAATAAAC
1 TTAAATTTAAAATAAAT
* *
14722329 TTAATTTTAAAACAAAT
1 TTAAATTTAAAATAAAT
14722346 TTAAA
1 TTAAA
14722351 ATGGTTTGGA
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 61 1.00
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (17 bp):
TTAAATTTAAAATAAAT
Found at i:14722307 original size:7 final size:6
Alignment explanation
Indices: 14722261--14722322 Score: 58
Period size: 6 Copynumber: 10.8 Consensus size: 6
14722251 TACCATAATA
* * *
14722261 TTAAAT TTAAA- TTAAAT TTAAA- TCAAAA ATAAAT TTAAAT TTAAA-
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* *
14722306 ATAAAT TTGAAT TTAAA
1 TTAAAT TTAAAT TTAAA
14722323 ATAAACTTAA
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
5 13 0.30
6 31 0.70
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (6 bp):
TTAAAT
Found at i:14724150 original size:24 final size:24
Alignment explanation
Indices: 14724124--14724190 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
14724114 TACTATTTTT
*
14724124 AAATTAAAATTAAATTAAAAGAATA
1 AAATT-AAATTAAATTAAAAAAATA
* *
14724149 AAATTAAATTTAATTAAAAAAATC
1 AAATTAAATTAAATTAAAAAAATA
* *
14724173 AAATTTAATTATATTAAA
1 AAATTAAATTAAATTAAA
14724191 TCTATTCAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (24 bp):
AAATTAAATTAAATTAAAAAAATA
Found at i:14724170 original size:19 final size:19
Alignment explanation
Indices: 14724129--14724183 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
14724119 TTTTTAAATT
* ** *
14724129 AAAATTAAATTAAAAGAAT
1 AAAATTAAATTTAATTAAA
14724148 AAAATTAAATTTAATTAAA
1 AAAATTAAATTTAATTAAA
*
14724167 AAAATCAAATTTAATTA
1 AAAATTAAATTTAATTA
14724184 TATTAAATCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATTAAATTTAATTAAA
Found at i:14733616 original size:166 final size:166
Alignment explanation
Indices: 14733343--14733769 Score: 820
Period size: 166 Copynumber: 2.6 Consensus size: 166
14733333 TTAAAAAATG
*
14733343 TGACATCTATCGATGATA-CCTAGCTGATTGTCAAGACAAAGAGGAGGTAAATAATTGTGAGATG
1 TGACATCTATCGATGATATCCTAGCTGATTGTCAAGACAAAGAGGAGGTAAATAATTATGAGATG
*
14733407 CGTAGAAATTGGCAAATGGAATCTTTAGATTGACGTGTTGGACGTGGTTATTTTGGAAGAATTTC
66 CTTAGAAATTGGCAAATGGAATCTTTAGATTGACGTGTTGGACGTGGTTATTTTGGAAGAATTTC
14733472 ATGCAAGGAGTTCAACATTGTCTGAGGATGATGCGT
131 ATGCAAGGAGTTCAACATTGTCTGAGGATGATGCGT
14733508 TGACATCTATCGATGATATCCTAGCTGATTGTCAAGACAAAGAGGAGGTAAATAATTATGAGATG
1 TGACATCTATCGATGATATCCTAGCTGATTGTCAAGACAAAGAGGAGGTAAATAATTATGAGATG
*
14733573 CTTAGAAATTGGCAAATAGAATCTTTAGATTGACGTGTTGGACGTGGTTATTTTGGAAGAATTTC
66 CTTAGAAATTGGCAAATGGAATCTTTAGATTGACGTGTTGGACGTGGTTATTTTGGAAGAATTTC
14733638 ATGCAAGGAGTTCAACATTGTCTGAGGATGATGCGT
131 ATGCAAGGAGTTCAACATTGTCTGAGGATGATGCGT
14733674 TGACATCTATCGATGATATCCTAGCTGATTGTCAAGACAAAGAGGAGGTAAATAATTATGAGATG
1 TGACATCTATCGATGATATCCTAGCTGATTGTCAAGACAAAGAGGAGGTAAATAATTATGAGATG
14733739 CTTAGAAATTGGCAAATGGAATCTTTAGATT
66 CTTAGAAATTGGCAAATGGAATCTTTAGATT
14733770 TGTCCAACAA
Statistics
Matches: 257, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
165 18 0.07
166 239 0.93
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (166 bp):
TGACATCTATCGATGATATCCTAGCTGATTGTCAAGACAAAGAGGAGGTAAATAATTATGAGATG
CTTAGAAATTGGCAAATGGAATCTTTAGATTGACGTGTTGGACGTGGTTATTTTGGAAGAATTTC
ATGCAAGGAGTTCAACATTGTCTGAGGATGATGCGT
Found at i:14744945 original size:20 final size:20
Alignment explanation
Indices: 14744920--14744962 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
14744910 TTATTGTTTA
14744920 CTTATGAATATTGATGTGAG
1 CTTATGAATATTGATGTGAG
14744940 CTTATGAATATTGATGTGAG
1 CTTATGAATATTGATGTGAG
14744960 CTT
1 CTT
14744963 GTTTTTTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (20 bp):
CTTATGAATATTGATGTGAG
Found at i:14746938 original size:2 final size:2
Alignment explanation
Indices: 14746931--14746963 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14746921 TCAAATCTTT
14746931 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14746964 TAGTCCCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14750924 original size:20 final size:21
Alignment explanation
Indices: 14750899--14750944 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
14750889 ATTTTCATCT
*
14750899 TGAAAAAAATCAAATTCA-AA
1 TGAAAAAAATAAAATTCAGAA
* *
14750919 TGAAAATATTAAAATTCAGAA
1 TGAAAAAAATAAAATTCAGAA
14750940 TGAAA
1 TGAAA
14750945 TTGTTGGCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.61, C:0.07, G:0.09, T:0.24
Consensus pattern (21 bp):
TGAAAAAAATAAAATTCAGAA
Found at i:14754626 original size:17 final size:17
Alignment explanation
Indices: 14754604--14754649 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
14754594 GGCCCAACAG
14754604 AATTTAAATTTACTTA-A
1 AATTTAAATTTA-TTATA
14754621 AATTTAAATTTATTATA
1 AATTTAAATTTATTATA
*
14754638 AATTTAAGTTTA
1 AATTTAAATTTA
14754650 AATTTATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 3 0.11
17 24 0.89
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
AATTTAAATTTATTATA
Found at i:14754639 original size:11 final size:10
Alignment explanation
Indices: 14754605--14754663 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
14754595 GCCCAACAGA
14754605 ATTTAAATTT
1 ATTTAAATTT
*
14754615 ACTTAAA---
1 ATTTAAATTT
14754622 ATTTAAATTT
1 ATTTAAATTT
14754632 ATTATAAATTT
1 ATT-TAAATTT
14754643 AAGTTTAAATTT
1 -A-TTTAAATTT
14754655 ATTTAAATT
1 ATTTAAATT
14754664 AATGTCCAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 6 0.15
10 17 0.41
11 8 0.20
12 8 0.20
13 2 0.05
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (10 bp):
ATTTAAATTT
Found at i:14756358 original size:17 final size:17
Alignment explanation
Indices: 14756338--14756370 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14756328 TATTTTTGCT
14756338 TCAA-TTTTGTCTTTAAA
1 TCAAGTTTTGT-TTTAAA
14756355 TCAAGTTTTGTTTTAA
1 TCAAGTTTTGTTTTAA
14756371 TTCTAAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.55
Consensus pattern (17 bp):
TCAAGTTTTGTTTTAAA
Found at i:14756760 original size:29 final size:29
Alignment explanation
Indices: 14756484--14756970 Score: 226
Period size: 30 Copynumber: 16.5 Consensus size: 29
14756474 GAAGGTCCAT
14756484 GAACTGTCCAAAAATTA-TATTTTGACCCTC
1 GAACT-TCCAAAAATTACTATTTT-ACCCTC
* *
14756514 GAACTTCTCAAAAAATA-TATTTCAACCCTC
1 GAACTTC-CAAAAATTACTATTT-TACCCTC
* * *
14756544 GATATTTTCAAAAATTGC-ATTTTGA-CCTCC
1 GA-ACTTCCAAAAATTACTATTTT-ACCCT-C
* *
14756574 AAACTTCACAAAATTTAC-ATTTTTACCC-C
1 GAACTTC-CAAAAATTACTA-TTTTACCCTC
* * * *
14756603 TAAACTTCACAAATATTAC-ATTTTTAACCTT
1 -GAACTTC-CAAAAATTACTA-TTTTACCCTC
* * *
14756634 GAACTTTCTAAAAATTA-TATTTTTGCCCCC
1 GAAC-TTCCAAAAATTACTA-TTTTACCCTC
* * *
14756664 AAATTTCATAAAAATTAC-ATTTTTACCCCTC
1 GAACTTC-CAAAAATTACTA-TTTTA-CCCTC
* *
14756695 AAACTTCTAAAAA-TA-TCATTTT-CCC-C
1 GAACTTCCAAAAATTACT-ATTTTACCCTC
*
14756721 GAACTTCCAAAAATTACTATTTTACCTTC
1 GAACTTCCAAAAATTACTATTTTACCCTC
* *
14756750 GAACTTTCAAAAA-TATCATTTTTTACCC-C
1 GAACTTCCAAAAATTA-C-TATTTTACCCTC
* *
14756779 GAACATCCAAAAAATCAC-ATTTTTACCCTC
1 GAACTTCC-AAAAATTACTA-TTTTACCCTC
* *
14756809 GAACTTCCAAATATTACCATTTTACCCTC
1 GAACTTCCAAAAATTACTATTTTACCCTC
* *
14756838 AAACTTCCAAAAA-TA-TCATTTTTGA-CCTT
1 GAACTTCCAAAAATTACT-A-TTTT-ACCCTC
*
14756867 GAACATTCCAAAAATTA-TCATTTTACCCCC
1 GAAC-TTCCAAAAATTACT-ATTTTACCCTC
* * *
14756897 GAACTTTCAAAAATTTC-ATTTTTGA-CCTT
1 GAACTTCCAAAAATTACTA-TTTT-ACCCTC
* * *
14756926 GAACTTTCTAAAAATTACCATTCTACCCTC
1 GAAC-TTCCAAAAATTACTATTTTACCCTC
*
14756956 GAACTTCCTAAAATT
1 GAACTTCCAAAAATT
14756971 GCATTTTTTA
Statistics
Matches: 357, Mismatches: 59, Indels: 83
0.72 0.12 0.17
Matches are distributed among these distances:
26 12 0.03
27 10 0.03
28 9 0.03
29 116 0.32
30 181 0.51
31 29 0.08
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.36
Consensus pattern (29 bp):
GAACTTCCAAAAATTACTATTTTACCCTC
Found at i:14756834 original size:88 final size:87
Alignment explanation
Indices: 14756703--14756940 Score: 272
Period size: 88 Copynumber: 2.7 Consensus size: 87
14756693 TCAAACTTCT
*
14756703 AAAAAT-ATCATTTT-CCCCGAACTTCCAAAAATTACTATTTTACCTTCGAACTTTCAAAAATAT
1 AAAAATCATCATTTTACCCCGAACTTCCAAAAATTACCATTTTACCTTCGAACTTTCAAAAATAT
*
14756766 CATTTTTTACCCCGAACA-TCC
66 CATTTTTGACCCCGAACATTCC
* * * *
14756787 AAAAAATCA-CATTTTTACCCTCGAACTTCCAAATATTACCATTTTACCCTCAAACTTCCAAAAA
1 -AAAAATCATCA-TTTTACCC-CGAACTTCCAAAAATTACCATTTTACCTTCGAACTTTCAAAAA
**
14756851 TATCATTTTTGACCTTGAACATTCC
63 TATCATTTTTGACCCCGAACATTCC
* * *
14756876 AAAAATTATCATTTTACCCCCGAACTTTCAAAAATT-TCATTTTTGACCTT-GAACTTTCTAAAA
1 AAAAATCATCATTTTA-CCCCGAACTTCCAAAAATTACCA-TTTT-ACCTTCGAACTTTC-AAAA
14756939 AT
62 AT
14756941 TACCATTCTA
Statistics
Matches: 128, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
85 8 0.06
86 5 0.04
87 5 0.04
88 92 0.72
89 18 0.14
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.35
Consensus pattern (87 bp):
AAAAATCATCATTTTACCCCGAACTTCCAAAAATTACCATTTTACCTTCGAACTTTCAAAAATAT
CATTTTTGACCCCGAACATTCC
Found at i:14756847 original size:59 final size:56
Alignment explanation
Indices: 14756484--14756978 Score: 297
Period size: 59 Copynumber: 8.4 Consensus size: 56
14756474 GAAGGTCCAT
* * * *
14756484 GAACTGTCCAAAAATTATATTTTGACCCTCGAACTTCTCAAAAAATAT-ATTTCAACCCTC
1 GAACT-TCCAAAAATTACATTTTTACCCTCGAACTTC-C-AAAATTATCATTT-TACCC-C
* * * * *
14756544 GATATTTTCAAAAATTGCATTTTGA-CCTCCAAACTTCACAAAATT-TACATTTTTACCCC
1 GA-ACTTCCAAAAATTACATTTTTACCCT-CGAACTTC-CAAAATTAT-CA-TTTTACCCC
* * * * * *
14756603 TAAACTTCACAAATATTACATTTTTAACCTTGAACTTTCTAAAAATTAT-ATTTTTGCCCCC
1 -GAACTTC-CAAAAATTACATTTTTACCCTCGAAC-TTC-CAAAATTATCA-TTTT-ACCCC
* * * * * *
14756664 AAATTTCATAAAAATTACATTTTTACCCCTCAAACTTCTAAAAATATCATTTT-CCCC
1 GAACTTC-CAAAAATTACATTTTTA-CCCTCGAACTTCCAAAATTATCATTTTACCCC
* * *
14756721 GAACTTCCAAAAATTAC-TATTTTACCTTCGAACTTTCAAAAATATCATTTTTTACCCC
1 GAACTTCCAAAAATTACAT-TTTTACCCTCGAACTTCCAAAATTATCA--TTTTACCCC
* * *
14756779 GAACATCCAAAAAATCACATTTTTACCCTCGAACTTCCAAATATTACCATTTTACCCTC
1 GAACTTCC-AAAAATTACATTTTTACCCTCGAACTTCCAAA-ATTATCATTTTACCC-C
* *
14756838 AAACTTCCAAAAA-TATCATTTTTGA-CCTTGAACATTCCAAAAATTATCATTTTACCCCC
1 GAACTTCCAAAAATTA-CATTTTT-ACCCTCGAAC-TTCC-AAAATTATCATTTTA-CCCC
* * * * * *
14756897 GAACTTTCAAAAATTTCATTTTTGA-CCTTGAACTTTCTAAAAATTACCATTCTACCCTC
1 GAACTTCCAAAAATTACATTTTT-ACCCTCGAAC-TTC-CAAAATTATCATTTTACCC-C
* *
14756956 GAACTTCCTAAAATTGCATTTTT
1 GAACTTCCAAAAATTACATTTTT
14756979 TATGTCGAAC
Statistics
Matches: 351, Mismatches: 55, Indels: 59
0.75 0.12 0.13
Matches are distributed among these distances:
55 20 0.06
56 14 0.04
57 14 0.04
58 42 0.12
59 139 0.40
60 94 0.27
61 27 0.08
62 1 0.00
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.36
Consensus pattern (56 bp):
GAACTTCCAAAAATTACATTTTTACCCTCGAACTTCCAAAATTATCATTTTACCCC
Found at i:14771473 original size:160 final size:160
Alignment explanation
Indices: 14770987--14771490 Score: 566
Period size: 160 Copynumber: 3.1 Consensus size: 160
14770977 GATGCAGTCA
* * * * * *
14770987 TCTTCCTGATGAGATACTGAGAAGTAGAGCAAATCAATGAAACAAAACTCAATGTGAGCGAACCT
1 TCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACCAAGCTCAAAGTGAGCAAATCT
* * * * * *
14771052 TCGAACCCCAGCTTCCTGATAAGATATTGAGAAGCAAGTCGAAGTAATAAAATTGTTAGTTTCTT
66 TCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAATCGTTAGCTTCCT
* * * * *
14771117 GATGAGATACTGAGAAGTGAACCAGATCCA
131 GATGAGATACAGAGAAGTGGACCAAATTCG
* * *
14771147 TCTTCCTGATAAGATACTGAAAAGAAGACCAAATCAAT-AAAGCCAAGCTCAAAGTGAGCAAATC
1 TCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAA-CCAAGCTCAAAGTGAGCAAATC
* * *
14771211 TTCGAACCCCAGCTTCCTGATGAGATAC--A-AAG-AAGT-GAACCGGAT----CCG-T--CTTC
65 TTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGC-AATAAAATCGTTAGCTTC
*
14771264 CTGATGAGATACAGAGAAGTGGATCAAAATAGAGATGCAG
129 CTGATGAGATACAGAGAAGTGGA-CCAAAT-----T-C-G
14771304 TCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACCAAGCTCAAAGTGAGCAAA
1 ---TCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACCAAGCTCAAAGTGAGCAAA
*
14771369 TCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAATGGTTAGCTT
63 TCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAATCGTTAGCTT
14771434 CCTGATGAGATACAGAGAAGTGGACCAAATTCG
128 CCTGATGAGATACAGAGAAGTGGACCAAATTCG
*
14771467 TCTTCCTGATGAGATACAGAGAAG
1 TCTTCCTGATGAGATACTGAGAAG
14771491 CGGATTGAAA
Statistics
Matches: 285, Mismatches: 33, Indels: 52
0.77 0.09 0.14
Matches are distributed among these distances:
149 23 0.08
150 4 0.01
151 1 0.00
152 1 0.00
155 3 0.01
156 7 0.02
157 3 0.01
158 1 0.00
159 3 0.01
160 185 0.65
161 3 0.01
162 1 0.00
163 4 0.01
164 7 0.02
165 5 0.02
168 1 0.00
169 1 0.00
170 5 0.02
171 27 0.09
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (160 bp):
TCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACCAAGCTCAAAGTGAGCAAATCT
TCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAATCGTTAGCTTCCT
GATGAGATACAGAGAAGTGGACCAAATTCG
Found at i:14771588 original size:209 final size:208
Alignment explanation
Indices: 14771221--14771974 Score: 979
Period size: 209 Copynumber: 3.6 Consensus size: 208
14771211 TTCGAACCCC
* ** *
14771221 AGCTTCCTGATGAGATACAAAGAAGTGAACCGGATCCGTCTTCCTGATGAGATACAGAGAAGTGG
1 AGCTTCCTGATGAGATACAGAGAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGCGG
* * * *
14771286 A-TCAAA-ATAGAGATGCAGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAA
66 ATTGAAACA-AGCGATGCGGTCATCTTCCTGATAAGATACTGAGAAGTAGACCAAATCAATGAAA
*
14771349 CCAAGCTCAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAAGTCGA
130 CCAAGCTC-AAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGA
14771414 AGCAATAAAATGGTT
194 AGCAATAAAATGGTT
* *
14771429 AGCTTCCTGATGAGATACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGG
1 AGCTTCCTGATGAGATACAGAGAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGCGG
*
14771494 ATTGAAACAAGCGATGCGGTCATCTTCCTGATAAGATACTGAGAAGTAGACCAAATCAATGAAAT
66 ATTGAAACAAGCGATGCGGTCATCTTCCTGATAAGATACTGAGAAGTAGACCAAATCAATGAAAC
* * * * * * *
14771559 AAAGCTCAATGCGAGCGAAA-CTACGAACCCCAGCTTCCTAATGAGATATTGAGAAGTAGGTTGA
131 CAAGCTCAA-GTGAGC-AAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGA
*
14771623 AGCAATAATATGGTT
194 AGCAATAAAATGGTT
* * * * *
14771638 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCTTGATGAGATACAAAGAAGCGG
1 AGCTTCCTGATGAGATACAGAGAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGCGG
*
14771703 ATTGAAACAAGCGATGCGATCATCTTCCTGATGAA-ATACTGAGAAGTAGACC-AATCAATGAAA
66 ATTGAAACAAGCGATGCGGTCATCTTCCTGAT-AAGATACTGAGAAGTAGACCAAATCAATGAAA
* * *
14771766 CCAGGCTCGAAGTGAGTAAATCTTCGAACCCCGGCTTCCTGATGAG--ACTGAGAAGCAGGTCGA
130 CCAAGCTC-AAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGA
* * *
14771829 AGAAATGAAGTGGTT
194 AGCAATAAAATGGTT
* * * * * *
14771844 ACCTTTCTGATGAGATATAGAGAAGTAAACCAGATCCGTCTTCCTGATGAGATACAGAGAAGTGG
1 AGCTTCCTGATGAGATACAGAGAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGCGG
** * * * *
14771909 ATCAAAACAAGTG--GAGGTCATCTTCCTGATGAGATACTGAGAAGTAGGCCAAATCAAT-AACA
66 ATTGAAACAAGCGATGCGGTCATCTTCCTGATAAGATACTGAGAAGTAGACCAAATCAATGAA-A
14771971 CCAA
130 CCAA
14771975 ACCATTGGAA
Statistics
Matches: 478, Mismatches: 58, Indels: 23
0.86 0.10 0.04
Matches are distributed among these distances:
203 1 0.00
204 33 0.07
205 11 0.02
206 89 0.19
207 3 0.01
208 104 0.22
209 231 0.48
210 6 0.01
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.22
Consensus pattern (208 bp):
AGCTTCCTGATGAGATACAGAGAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGCGG
ATTGAAACAAGCGATGCGGTCATCTTCCTGATAAGATACTGAGAAGTAGACCAAATCAATGAAAC
CAAGCTCAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAG
CAATAAAATGGTT
Found at i:14774191 original size:30 final size:29
Alignment explanation
Indices: 14774124--14774450 Score: 152
Period size: 30 Copynumber: 11.2 Consensus size: 29
14774114 CTGAACTGTC
* * * *
14774124 CAAAAATCATATTTTAACACTCGAACTTCT
1 CAAAAATTACATTTTAAC-CTCAAACTTTT
*
14774154 CAAAAATTATATTTTAACCTCTAAACTTTT
1 CAAAAATTACATTTTAACCTC-AAACTTTT
* *
14774184 CAAAAATTGCATTTAAACCTCAAAC--TT
1 CAAAAATTACATTTTAACCTCAAACTTTT
* *
14774211 CATAAAATTACATTTTACCCCCAAA-TTTT
1 CA-AAAATTACATTTTAACCTCAAACTTTT
** *
14774240 ACAAAAATTACATTTTTGTCCCCTAAAC--TT
1 -CAAAAATTACA-TTTTAACCTC-AAACTTTT
* * * * * * *
14774270 CCAAAACTATCATTTTTGACCCCGAGC-TTC
1 CAAAAATTA-CA-TTTTAACCTCAAACTTTT
* * *
14774300 CAAAAAATCACATTTTTACCCTCAAAC-TTC
1 C-AAAAATTACA-TTTTAACCTCAAACTTTT
* *
14774330 CAAAAATTACCATTTT-ACCTCGAAC-TTC
1 CAAAAATTA-CATTTTAACCTCAAACTTTT
* *
14774358 CAAAAATTCCATTTTTAACCTTAAACTTTT
1 CAAAAATTACA-TTTTAACCTCAAACTTTT
* * **
14774388 CAAATATTACCATTTTACCCTTGAAC-TTT
1 CAAAAATTA-CATTTTAACCTCAAACTTTT
* * ** *
14774417 CTAAAATTACATTTTTACCTTGAACTTTC
1 CAAAAATTACATTTTAACCTCAAACTTTT
14774446 CAAAA
1 CAAAA
14774451 TTATGTTTTC
Statistics
Matches: 237, Mismatches: 43, Indels: 35
0.75 0.14 0.11
Matches are distributed among these distances:
27 6 0.03
28 54 0.23
29 61 0.26
30 106 0.45
31 10 0.04
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.36
Consensus pattern (29 bp):
CAAAAATTACATTTTAACCTCAAACTTTT
Found at i:14774255 original size:29 final size:28
Alignment explanation
Indices: 14774153--14774255 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 28
14774143 CTCGAACTTC
* * *
14774153 TCAAAAATTATATTTTAACCTCTAAACTTT
1 TCAAAAATTACATTTT-ACCCCCAAA-TTT
* * * * *
14774183 TCAAAAATTGCATTTAAACCTCAAA-CT
1 TCAAAAATTACATTTTACCCCCAAATTT
14774210 TCATAAAATTACATTTTACCCCCAAATTT
1 TCA-AAAATTACATTTTACCCCCAAATTT
14774239 TACAAAAATTACATTTT
1 T-CAAAAATTACATTTT
14774256 TGTCCCCTAA
Statistics
Matches: 57, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
27 4 0.07
28 18 0.32
29 20 0.35
30 15 0.26
ACGTcount: A:0.42, C:0.19, G:0.01, T:0.38
Consensus pattern (28 bp):
TCAAAAATTACATTTTACCCCCAAATTT
Found at i:14774384 original size:29 final size:29
Alignment explanation
Indices: 14774117--14774403 Score: 153
Period size: 30 Copynumber: 9.7 Consensus size: 29
14774107 AAGGTCCCTG
*
14774117 AACTGTCCAAAAA-T-CATATTTTAACACTCG
1 AACT-TCCAAAAATTCCAT-TTTTAAC-CTCA
14774147 AACTTCTCAAAAATT--ATATTTTAACCTCTA
1 AACTTC-CAAAAATTCCAT-TTTTAACCTC-A
* * *
14774177 AACTTTTCAAAAATTGCA-TTTAAACCTCA
1 AAC-TTCCAAAAATTCCATTTTTAACCTCA
* * *
14774206 AACTT-CATAAAATTACA-TTTTACCCCCA
1 AACTTCCA-AAAATTCCATTTTTAACCTCA
* * * ** *
14774234 AATTTTACAAAAATTACATTTTTGTCCCCTA
1 AA-CTTCCAAAAATTCCATTTTTAACCTC-A
* * * *
14774265 AACTTCCAAAACTAT-CATTTTTGACCCCG
1 AACTTCCAAAAAT-TCCATTTTTAACCTCA
* * *
14774294 AGCTTCCAAAAAATCACATTTTTACCCTCA
1 AACTTCCAAAAATTC-CATTTTTAACCTCA
*
14774324 AACTTCCAAAAATTACCA-TTTT-ACCTCG
1 AACTTCCAAAAATT-CCATTTTTAACCTCA
*
14774352 AACTTCCAAAAATTCCATTTTTAACCTTA
1 AACTTCCAAAAATTCCATTTTTAACCTCA
* *
14774381 AACTTTTCAAATATTACCATTTT
1 AAC-TTCCAAAAATT-CCATTTT
14774404 ACCCTTGAAC
Statistics
Matches: 208, Mismatches: 30, Indels: 37
0.76 0.11 0.13
Matches are distributed among these distances:
27 5 0.02
28 43 0.21
29 41 0.20
30 103 0.50
31 15 0.07
32 1 0.00
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.36
Consensus pattern (29 bp):
AACTTCCAAAAATTCCATTTTTAACCTCA
Found at i:14774400 original size:58 final size:58
Alignment explanation
Indices: 14774184--14774489 Score: 200
Period size: 58 Copynumber: 5.3 Consensus size: 58
14774174 CTAAACTTTT
* * * * * * * *
14774184 CAAAAATTGCA-TTTAAACCTCAAAC-TTCATAAAATTA-CATTTTACCCCCAAATTTTA
1 CAAAAATTCCATTTTTAACCTTAAACTTTC-CAAAATTACCATTTTACCCTCGAA-CTTC
* ** * * * *
14774241 CAAAAATTACATTTTTGTCCCCTAAAC-TTCCAAAACTATCATTTTTGACCC-CGAGCTTC
1 CAAAAATTCCATTTTT-AACCTTAAACTTTCCAAAATTACCA-TTTT-ACCCTCGAACTTC
* * *
14774300 CAAAAAATCACATTTTTACCCTCAAAC-TTCCAAAAATTACCATTTTA-CCTCGAACTTC
1 CAAAAATTC-CATTTTTAACCTTAAACTTTCC-AAAATTACCATTTTACCCTCGAACTTC
* * *
14774358 CAAAAATTCCATTTTTAACCTTAAACTTTTCAAATATTACCATTTTACCCTTGAACTTT
1 CAAAAATTCCATTTTTAACCTTAAACTTTCCAAA-ATTACCATTTTACCCTCGAACTTC
* * * **
14774417 CTAAAATTACATTTTT-ACCTTGAACTTTCCAAAATTA-TGTTTTCACCCTCGAA-TATC
1 CAAAAATTCCATTTTTAACCTTAAACTTTCCAAAATTACCATTTT-ACCCTCGAACT-TC
*
14774474 TAAAAATTACCATTTT
1 CAAAAATT-CCATTTT
14774490 ACCCTCGGAT
Statistics
Matches: 198, Mismatches: 37, Indels: 27
0.76 0.14 0.10
Matches are distributed among these distances:
56 5 0.03
57 49 0.25
58 61 0.31
59 58 0.29
60 21 0.11
61 4 0.02
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.37
Consensus pattern (58 bp):
CAAAAATTCCATTTTTAACCTTAAACTTTCCAAAATTACCATTTTACCCTCGAACTTC
Found at i:14774425 original size:29 final size:29
Alignment explanation
Indices: 14774313--14774496 Score: 139
Period size: 28 Copynumber: 6.4 Consensus size: 29
14774303 AAAATCACAT
* * *
14774313 TTTTACCCTCAAACTTCCAAAAATTACCA
1 TTTTACCCTCGAACTTTCTAAAATTACCA
* *
14774342 TTTTA-CCTCGAACTTCCAAAAATT-CCA
1 TTTTACCCTCGAACTTTCTAAAATTACCA
* **
14774369 TTTTTAACCTTAAACTTT-TCAAATATTACCA
1 -TTTTACCCTCGAACTTTCT-AAA-ATTACCA
*
14774400 TTTTACCCTTGAACTTTCTAAAATTA-CA
1 TTTTACCCTCGAACTTTCTAAAATTACCA
* * **
14774428 TTTTTA-CCTTGAACTTTCCAAAATTA-TG
1 -TTTTACCCTCGAACTTTCTAAAATTACCA
*
14774456 TTTTCACCCTCGAA-TATCTAAAAATTACCA
1 TTTT-ACCCTCGAACTTTCT-AAAATTACCA
14774486 TTTTACCCTCG
1 TTTTACCCTCG
14774497 GATATCCAAA
Statistics
Matches: 129, Mismatches: 15, Indels: 22
0.78 0.09 0.13
Matches are distributed among these distances:
27 7 0.05
28 48 0.37
29 45 0.35
30 25 0.19
31 4 0.03
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.39
Consensus pattern (29 bp):
TTTTACCCTCGAACTTTCTAAAATTACCA
Found at i:14774483 original size:57 final size:60
Alignment explanation
Indices: 14774302--14774489 Score: 194
Period size: 57 Copynumber: 3.2 Consensus size: 60
14774292 CGAGCTTCCA
* * * * *
14774302 AAAAATCACATTTTTACCCTCAAAC-TTCCAAAAATTACCATTTTA-CCTCGAACT-TCC
1 AAAAATTACATTTTTAACCTTAAACTTTCCAAATATTACCATTTTACCCTCGAACTATCT
* * * *
14774359 AAAAATTCCATTTTTAACCTTAAACTTTTCAAATATTACCATTTTACCCTTGAACTTTCT
1 AAAAATTACATTTTTAACCTTAAACTTTCCAAATATTACCATTTTACCCTCGAACTATCT
* **
14774419 -AAAATTACATTTTT-ACCTTGAACTTTCCAAA-ATTA-TGTTTTCACCCTCGAA-TATCT
1 AAAAATTACATTTTTAACCTTAAACTTTCCAAATATTACCATTTT-ACCCTCGAACTATCT
14774475 AAAAATTACCATTTT
1 AAAAATTA-CATTTT
14774490 ACCCTCGGAT
Statistics
Matches: 110, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
56 8 0.07
57 40 0.36
58 39 0.35
59 21 0.19
60 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.39
Consensus pattern (60 bp):
AAAAATTACATTTTTAACCTTAAACTTTCCAAATATTACCATTTTACCCTCGAACTATCT
Found at i:14774501 original size:29 final size:29
Alignment explanation
Indices: 14774302--14774541 Score: 120
Period size: 29 Copynumber: 8.3 Consensus size: 29
14774292 CGAGCTTCCA
* * *
14774302 AAAAATCACATTTTTACCCTCAAACT-TCC
1 AAAAATTACATTTTCACCCTCGAA-TATCC
14774331 AAAAATTACCATTTT-A-CCTCGAACT-TCC
1 AAAAATTA-CATTTTCACCCTCGAA-TATCC
* * * ** * *
14774359 AAAAATTCCATTTTTAACCTTAAACTTTTC
1 AAAAATTACATTTTCACCCTCGAA-TATCC
* * *
14774389 AAATATTACCATTTT-ACCCTTGAACT-TTC
1 AAAAATTA-CATTTTCACCCTCGAA-TATCC
* * * *
14774418 TAAAATTACATTTTTA-CCTTGAACTTTCC
1 AAAAATTACATTTTCACCCTCGAA-TATCC
** *
14774447 -AAAATTATGTTTTCACCCTCGAATATCT
1 AAAAATTACATTTTCACCCTCGAATATCC
*
14774475 AAAAATTACCATTTT-ACCCTCGGATATCC
1 AAAAATTA-CATTTTCACCCTCGAATATCC
** * *
14774504 AAAAATTACATTTTTGCCCTCGAGTGTCC
1 AAAAATTACATTTTCACCCTCGAATATCC
14774533 AAAAATTAC
1 AAAAATTAC
14774542 CGTTATGCCC
Statistics
Matches: 173, Mismatches: 27, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
27 6 0.03
28 55 0.32
29 79 0.46
30 27 0.16
31 6 0.03
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.37
Consensus pattern (29 bp):
AAAAATTACATTTTCACCCTCGAATATCC
Found at i:14774550 original size:29 final size:29
Alignment explanation
Indices: 14774447--14774596 Score: 101
Period size: 29 Copynumber: 5.2 Consensus size: 29
14774437 TGAACTTTCC
* * * *
14774447 AAAATTA-TGTTTTCACCCTCGAATATCTA
1 AAAATTACCGTTTT-ACCCTCGAGTGTCCA
* *
14774476 AAAATTACCATTTTACCCTCG-GATATCCA
1 AAAATTACCGTTTTACCCTCGAG-TGTCCA
** *
14774505 AAAATTACATTTTTGCCCTCGAGTGTCCA
1 AAAATTACCGTTTTACCCTCGAGTGTCCA
* * * *
14774534 AAAATTACCGTTATGCCCCCGAATTGTCC-
1 AAAATTACCGTTTTACCCTCG-AGTGTCCA
* *
14774563 AAAATTATCGTTTTACACC-CGAGCGTCCA
1 AAAATTACCGTTTTAC-CCTCGAGTGTCCA
14774592 AAAAT
1 AAAAT
14774597 CATATTTTAA
Statistics
Matches: 97, Mismatches: 18, Indels: 12
0.76 0.14 0.09
Matches are distributed among these distances:
28 5 0.05
29 79 0.81
30 13 0.13
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (29 bp):
AAAATTACCGTTTTACCCTCGAGTGTCCA
Found at i:14783847 original size:43 final size:43
Alignment explanation
Indices: 14783767--14784260 Score: 379
Period size: 43 Copynumber: 11.9 Consensus size: 43
14783757 GTGTTGTAAT
* * *
14783767 TTCAATCCGCCCCTCTAGATTAGGGGTAAGAGATTGGATGATGGC
1 TTCAATCTG-CCCTCTGGATTA-GGGTAAAAGATTGGATGATGGC
* **
14783812 TTCAATCTGCCCTCTGGATTAGGGTAAAAGATTGGATGGTTTC
1 TTCAATCTGCCCTCTGGATTAGGGTAAAAGATTGGATGATGGC
* *
14783855 TTCAATCTGTCCTCTGGATTAGGGTAAAAGATTGGATGCTGGC
1 TTCAATCTGCCCTCTGGATTAGGGTAAAAGATTGGATGATGGC
* *
14783898 TTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGC
1 TTCAATCTGCCCTCTGGATTAGGGTAAAAGATTGGATGATGGC
*
14783941 TTCAATCTGCCCTTTGGATTAGGGTAAAAGATT--A-GATGGC
1 TTCAATCTGCCCTCTGGATTAGGGTAAAAGATTGGATGATGGC
* * * ** * * *
14783981 TTCGATCTACCC-CTTGATCGGGGTAAGAGATTGGATGGTGTC
1 TTCAATCTGCCCTCTGGATTAGGGTAAAAGATTGGATGATGGC
* * *
14784023 TTCAATCTGCCCTCTTG-TTAAGGTAAAAG-TTTG--GATGGC
1 TTCAATCTGCCCTCTGGATTAGGGTAAAAGATTGGATGATGGC
* ** *
14784062 TTCAATCTACCC-CATGG-TCGGGGTAAAAGATTGGAT-AGTGTC
1 TTCAATCTGCCCTC-TGGATTAGGGTAAAAGATTGGATGA-TGGC
* * *
14784104 TTCAATCTACCCTCT-AATTAGGGTGAAAGATT-G--GATGGC
1 TTCAATCTGCCCTCTGGATTAGGGTAAAAGATTGGATGATGGC
* * * *
14784143 TTCAATCTG-CCTCATGG--TCGAGGTAAGAGATTGGATGGTGTC
1 TTCAATCTGCCCTC-TGGATTAG-GGTAAAAGATTGGATGATGGC
* ** * *
14784185 TTCCATCCACCCTCTGG-TTAGGGTAGAAGGTT--A-GATGGC
1 TTCAATCTGCCCTCTGGATTAGGGTAAAAGATTGGATGATGGC
* * * *
14784224 TTCGATCTACCC-CATGG-TTAGGGTAAGAGATTAGATG
1 TTCAATCTGCCCTC-TGGATTAGGGTAAAAGATTGGATG
14784261 GGATGATGCA
Statistics
Matches: 358, Mismatches: 67, Indels: 51
0.75 0.14 0.11
Matches are distributed among these distances:
38 8 0.02
39 91 0.25
40 21 0.06
41 8 0.02
42 72 0.20
43 139 0.39
44 11 0.03
45 8 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TTCAATCTGCCCTCTGGATTAGGGTAAAAGATTGGATGATGGC
Found at i:14784085 original size:81 final size:81
Alignment explanation
Indices: 14783806--14784261 Score: 468
Period size: 81 Copynumber: 5.5 Consensus size: 81
14783796 GAGATTGGAT
* * * *
14783806 GATGGCTTCAATCTGCCCTC-TGGATTAGGGTAAAAGATTGGATGGTTTCTTCAATCTGTCCTCT
1 GATGGCTTCAATCTACCC-CATGG-TCAGGGTAAAAGATTGGATGGTGTCTTCAATCTGCCCTCT
14783870 GGATTAGGGTAAAAGATTG
64 GG-TTAGGGTAAAAGATTG
* * * *
14783889 GATGCTGGCTTCAATCTGCCCTC-TAGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCC
1 GA---TGGCTTCAATCTACCC-CAT-GGTCAGGGTAAAAGATTGGATGGTGTCTTCAATCTGCCC
* *
14783953 TTTGGATTAGGGTAAAAGATTA
61 TCTGG-TTAGGGTAAAAGATTG
* * * * * *
14783975 GATGGCTTCGATCTACCCCTTGATCGGGGTAAGAGATTGGATGGTGTCTTCAATCTGCCCTCTTG
1 GATGGCTTCAATCTACCCCATGGTCAGGGTAAAAGATTGGATGGTGTCTTCAATCTGCCCTCTGG
* *
14784040 TTAAGGTAAAAGTTTG
66 TTAGGGTAAAAGATTG
* * * **
14784056 GATGGCTTCAATCTACCCCATGGTCGGGGTAAAAGATTGGATAGTGTCTTCAATCTACCCTCTAA
1 GATGGCTTCAATCTACCCCATGGTCAGGGTAAAAGATTGGATGGTGTCTTCAATCTGCCCTCTGG
*
14784121 TTAGGGTGAAAGATTG
66 TTAGGGTAAAAGATTG
* * * * **
14784137 GATGGCTTCAATCTGCCTCATGGTC-GAGGTAAGAGATTGGATGGTGTCTTCCATCCACCCTCTG
1 GATGGCTTCAATCTACCCCATGGTCAG-GGTAAAAGATTGGATGGTGTCTTCAATCTGCCCTCTG
* * *
14784201 GTTAGGGTAGAAGGTTA
65 GTTAGGGTAAAAGATTG
* * * *
14784218 GATGGCTTCGATCTACCCCATGGTTAGGGTAAGAGATTAGATGG
1 GATGGCTTCAATCTACCCCATGGTCAGGGTAAAAGATTGGATGG
14784262 GATGATGCAA
Statistics
Matches: 321, Mismatches: 45, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
80 1 0.00
81 187 0.58
82 40 0.12
83 17 0.05
86 75 0.23
87 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (81 bp):
GATGGCTTCAATCTACCCCATGGTCAGGGTAAAAGATTGGATGGTGTCTTCAATCTGCCCTCTGG
TTAGGGTAAAAGATTG
Found at i:14787122 original size:20 final size:20
Alignment explanation
Indices: 14787097--14787139 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
14787087 CGAAAACCCA
* *
14787097 AAACCTCGATCTTTAAACTC
1 AAACCTCGAACCTTAAACTC
*
14787117 AAACCTTGAACCTTAAACTC
1 AAACCTCGAACCTTAAACTC
14787137 AAA
1 AAA
14787140 TCTTAAGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.28, G:0.05, T:0.26
Consensus pattern (20 bp):
AAACCTCGAACCTTAAACTC
Found at i:14787219 original size:46 final size:44
Alignment explanation
Indices: 14787168--14787263 Score: 122
Period size: 44 Copynumber: 2.1 Consensus size: 44
14787158 GGAATAGTGT
*
14787168 TGTAATGGAATAAAGCTGTAATCAGTAATTCAAT-TGTTTGGTTGAA
1 TGTAATGAAATAAAGCTGTAAT-AGT-ATTC-ATGTGTTTGGTTGAA
** *
14787214 TGTAATGAAATAAATTTGTAATAGTATTCTTGTGTTTGGTTGAA
1 TGTAATGAAATAAAGCTGTAATAGTATTCATGTGTTTGGTTGAA
14787258 TGTAAT
1 TGTAAT
14787264 AGATGTTGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.49
45 3 0.07
46 19 0.42
ACGTcount: A:0.33, C:0.04, G:0.21, T:0.42
Consensus pattern (44 bp):
TGTAATGAAATAAAGCTGTAATAGTATTCATGTGTTTGGTTGAA
Found at i:14793517 original size:60 final size:62
Alignment explanation
Indices: 14793453--14793580 Score: 188
Period size: 60 Copynumber: 2.1 Consensus size: 62
14793443 ATATAATAGG
* * * *
14793453 ATTATTATTAAACATAATTTAATAAAAATGATAATAAATAATTTAATCATATT-TTAATA-A
1 ATTATTATTAAACATAATTTAATAAAAATAAAAATAAATAATTTAATAACATTCTTAATATA
* *
14793513 ATTATTATTAAATATAATTTAATAAAAATAAAAATATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAACATAATTTAATAAAAATAAAAATAAATAATTTAATAACATTCTTAATATA
14793575 ATTATT
1 ATTATT
14793581 TTTAGAATAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
60 47 0.78
61 6 0.10
62 7 0.12
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (62 bp):
ATTATTATTAAACATAATTTAATAAAAATAAAAATAAATAATTTAATAACATTCTTAATATA
Found at i:14793604 original size:62 final size:60
Alignment explanation
Indices: 14793453--14793602 Score: 185
Period size: 60 Copynumber: 2.5 Consensus size: 60
14793443 ATATAATAGG
* * * * *
14793453 ATTATTATTAAACATAATTTAATAAAAATGATAATAAATAATTTAATCATATTTTAATAA
1 ATTATTATTAAATATAATTTAATAAAAATAAAAATAAATAATTTAATAACATTTTAATAA
*
14793513 ATTATTATTAAATATAATTTAATAAAAATAAAAATATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATAAAAATAAATAATTTAATAACATT-TTAATA-A
* *
14793575 ATTATTTTTAGAATA-AATTATATTAAAA
1 ATTATTATTA-AATATAATT-TAATAAAA
14793603 TATTTTTTTA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
60 47 0.60
61 6 0.08
62 14 0.18
63 11 0.14
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (60 bp):
ATTATTATTAAATATAATTTAATAAAAATAAAAATAAATAATTTAATAACATTTTAATAA
Found at i:14799864 original size:15 final size:15
Alignment explanation
Indices: 14799846--14799925 Score: 61
Period size: 15 Copynumber: 5.3 Consensus size: 15
14799836 AAGATACGAG
14799846 CACTCATGTTGCGAA
1 CACTCATGTTGCGAA
** *
14799861 CACTGGTGCTGCGAA
1 CACTCATGTTGCGAA
* * *
14799876 CAGTCATGTTGTGAG
1 CACTCATGTTGCGAA
** *
14799891 CACTCACATTGAGAA
1 CACTCATGTTGCGAA
* *
14799906 CATTGATGTTGCGAA
1 CACTCATGTTGCGAA
14799921 CACTC
1 CACTC
14799926 GCATTACGAG
Statistics
Matches: 44, Mismatches: 21, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
15 44 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (15 bp):
CACTCATGTTGCGAA
Found at i:14799907 original size:30 final size:30
Alignment explanation
Indices: 14799873--14799930 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
14799863 CTGGTGCTGC
* *
14799873 GAACAGTCATGTTGTGAGCACTCACATTGA
1 GAACAGTCATGTTGCGAACACTCACATTGA
* * *
14799903 GAACATTGATGTTGCGAACACTCGCATT
1 GAACAGTCATGTTGCGAACACTCACATT
14799931 ACGAGCAGGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (30 bp):
GAACAGTCATGTTGCGAACACTCACATTGA
Found at i:14800663 original size:17 final size:17
Alignment explanation
Indices: 14800641--14800674 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14800631 CCAACCAAGC
* *
14800641 AGTAACTACTCCATTAA
1 AGTAACCACTACATTAA
14800658 AGTAACCACTACATTAA
1 AGTAACCACTACATTAA
14800675 CTTAAAGTGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (17 bp):
AGTAACCACTACATTAA
Found at i:14808983 original size:12 final size:12
Alignment explanation
Indices: 14808966--14808991 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14808956 CCAATAATTC
14808966 ATGATTGAAGTT
1 ATGATTGAAGTT
14808978 ATGATTGAAGTT
1 ATGATTGAAGTT
14808990 AT
1 AT
14808992 TGATAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (12 bp):
ATGATTGAAGTT
Found at i:14812848 original size:22 final size:22
Alignment explanation
Indices: 14812784--14812848 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
14812774 AAAAAACAAA
* *
14812784 ATGAACAGTTAAATTCTCTGAC
1 ATGAACAGTTAGATTCTCTGGC
*
14812806 ATGAACAGTGAGATTCTCTGGC
1 ATGAACAGTTAGATTCTCTGGC
14812828 ATGAACAGTTAGATTCTCTGG
1 ATGAACAGTTAGATTCTCTGG
14812849 TAATATTCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGAACAGTTAGATTCTCTGGC
Done.