Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 48 of 143
Found at i:15261219 original size:7 final size:7
Alignment explanation
Indices: 15261204--15261238 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
15261194 CTCATTTCAC
15261204 AACTAAA
1 AACTAAA
*
15261211 AAGTAAA
1 AACTAAA
*
15261218 AACTTAA
1 AACTAAA
15261225 AACTAAA
1 AACTAAA
15261232 AACTAAA
1 AACTAAA
15261239 GCTGAAGTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.69, C:0.11, G:0.03, T:0.17
Consensus pattern (7 bp):
AACTAAA
Found at i:15271263 original size:15 final size:17
Alignment explanation
Indices: 15271243--15271278 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
15271233 GAATAAAGTG
15271243 TTTTTG-AGACTT-TAA
1 TTTTTGAAGACTTGTAA
15271258 TTTTTGAAGACTTGTAA
1 TTTTTGAAGACTTGTAA
15271275 TTTT
1 TTTT
15271279 GGATTATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 6 0.32
17 7 0.37
ACGTcount: A:0.25, C:0.06, G:0.14, T:0.56
Consensus pattern (17 bp):
TTTTTGAAGACTTGTAA
Found at i:15273611 original size:23 final size:23
Alignment explanation
Indices: 15273581--15273627 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
15273571 ATGAGGAACT
15273581 AATTCCATTTTGGGGAATTAGGG
1 AATTCCATTTTGGGGAATTAGGG
15273604 AATTCCATTTTGGGGAATTAGGG
1 AATTCCATTTTGGGGAATTAGGG
15273627 A
1 A
15273628 GTAAAAGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.34
Consensus pattern (23 bp):
AATTCCATTTTGGGGAATTAGGG
Found at i:15283762 original size:20 final size:19
Alignment explanation
Indices: 15283737--15283786 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 19
15283727 TTCAAGGTAG
*
15283737 CGGTAGAAGTGGAGTTGTA
1 CGGTAGAAGTGGAGTTCTA
15283756 TCGGTAGAAGTGGAGTTCTA
1 -CGGTAGAAGTGGAGTTCTA
15283776 CTGGTAGAAGT
1 C-GGTAGAAGT
15283787 CTCACTGGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.26, C:0.08, G:0.38, T:0.28
Consensus pattern (19 bp):
CGGTAGAAGTGGAGTTCTA
Found at i:15285722 original size:23 final size:23
Alignment explanation
Indices: 15285706--15285796 Score: 137
Period size: 23 Copynumber: 4.0 Consensus size: 23
15285696 ATATTTTATG
15285706 ATAAATCACATTAATATTTAAGC
1 ATAAATCACATTAATATTTAAGC
* * *
15285729 ATAAATCATATTAACATTTAAGA
1 ATAAATCACATTAATATTTAAGC
*
15285752 ATAAATAACATTAATATTTAAGC
1 ATAAATCACATTAATATTTAAGC
*
15285775 ACAAATCACATTAATATTTAAG
1 ATAAATCACATTAATATTTAAG
15285797 ATATTTAATG
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 59 1.00
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.34
Consensus pattern (23 bp):
ATAAATCACATTAATATTTAAGC
Found at i:15288885 original size:23 final size:23
Alignment explanation
Indices: 15288827--15288937 Score: 123
Period size: 23 Copynumber: 4.8 Consensus size: 23
15288817 ATATTTTATG
* * *
15288827 ATAAATCATATCAAAATTTAAGC
1 ATAAATCACATTAATATTTAAGC
* *
15288850 ATAAATCATATTAACATTTAAGC
1 ATAAATCACATTAATATTTAAGC
* *
15288873 ATAAATCACATTAATATCTAAGT
1 ATAAATCACATTAATATTTAAGC
* * *
15288896 ACAAATTAGATTAATATTTAAGC
1 ATAAATCACATTAATATTTAAGC
*
15288919 ACAAATCACATTAATATTT
1 ATAAATCACATTAATATTT
15288938 TATACATTTA
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 75 1.00
ACGTcount: A:0.49, C:0.13, G:0.05, T:0.34
Consensus pattern (23 bp):
ATAAATCACATTAATATTTAAGC
Found at i:15289488 original size:68 final size:70
Alignment explanation
Indices: 15289398--15289552 Score: 206
Period size: 72 Copynumber: 2.2 Consensus size: 70
15289388 TTAGCATAAT
* * *
15289398 ATATTCACTGTCACATGACATGAATAACATA-C-ATATTTATTGCCTCATGGCATGAATAACATA
1 ATATTTACTGTCACATGACATGAATAACATACCAATATTTACTACCTCATGGCATGAATAACATA
*
15289461 CTCAC
66 CCCAC
* * *
15289466 ATTTTTACTGTCACATGGCATGAATAACATACCCATATATTTACTATCTCATGGCATGAATAACA
1 ATATTTACTGTCACATGACATGAATAACATA-CCA-ATATTTACTACCTCATGGCATGAATAACA
15289531 TACCCAC
64 TACCCAC
*
15289538 ATATTTACTTTCACA
1 ATATTTACTGTCACA
15289553 ACAATCATCA
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
68 28 0.38
70 1 0.01
72 45 0.61
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (70 bp):
ATATTTACTGTCACATGACATGAATAACATACCAATATTTACTACCTCATGGCATGAATAACATA
CCCAC
Found at i:15289490 original size:36 final size:36
Alignment explanation
Indices: 15289398--15289552 Score: 183
Period size: 36 Copynumber: 4.4 Consensus size: 36
15289388 TTAGCATAAT
* *
15289398 ATATTCACTGTCACATGACATGAATAACAT----AC
1 ATATTTACTGTCACATGGCATGAATAACATACCCAC
* * * *
15289430 ATATTTATTGCCTCATGGCATGAATAACATACTCAC
1 ATATTTACTGTCACATGGCATGAATAACATACCCAC
* *
15289466 ATTTTTACTGTCACATGGCATGAATAACATACCCAT
1 ATATTTACTGTCACATGGCATGAATAACATACCCAC
* *
15289502 ATATTTACTATCTCATGGCATGAATAACATACCCAC
1 ATATTTACTGTCACATGGCATGAATAACATACCCAC
*
15289538 ATATTTACTTTCACA
1 ATATTTACTGTCACA
15289553 ACAATCATCA
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
32 25 0.25
36 77 0.75
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (36 bp):
ATATTTACTGTCACATGGCATGAATAACATACCCAC
Found at i:15294306 original size:44 final size:43
Alignment explanation
Indices: 15294239--15294325 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 43
15294229 GCTCACTAAG
*
15294239 TTAGTTTTTATTTTTTAGCACTTAGTTTAGCTTTCATGGATAT
1 TTAGTTTTTATTTTTTAGCACTTAGTTTAGCTTTCATGCATAT
*
15294282 TTAGTTTTATTTTTTTTAGCACTTAGTTTAGCTTTCATGCATAT
1 TTAGTTTT-TATTTTTTAGCACTTAGTTTAGCTTTCATGCATAT
15294326 CATGTAATTG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 8 0.20
44 33 0.80
ACGTcount: A:0.21, C:0.10, G:0.13, T:0.56
Consensus pattern (43 bp):
TTAGTTTTTATTTTTTAGCACTTAGTTTAGCTTTCATGCATAT
Found at i:15301497 original size:21 final size:21
Alignment explanation
Indices: 15301471--15301510 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15301461 TCAAGCAAAC
*
15301471 AAGAAAACAAACCAAATAATG
1 AAGAAAACAAACAAAATAATG
*
15301492 AAGAAAAGAAACAAAATAA
1 AAGAAAACAAACAAAATAA
15301511 AAATAAGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.72, C:0.10, G:0.10, T:0.07
Consensus pattern (21 bp):
AAGAAAACAAACAAAATAATG
Found at i:15303092 original size:18 final size:18
Alignment explanation
Indices: 15303048--15303093 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
15303038 TTATCCCAAA
* *
15303048 AATTAAAAATCTTAAAAT
1 AATTAAAAGTCTTAAAAC
*
15303066 AATTCAAAGTCTTAAAAC
1 AATTAAAAGTCTTAAAAC
*
15303084 GATTAAAAGT
1 AATTAAAAGT
15303094 TAAAGTTCAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.30
Consensus pattern (18 bp):
AATTAAAAGTCTTAAAAC
Found at i:15313833 original size:17 final size:17
Alignment explanation
Indices: 15313811--15313851 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
15313801 TAGTTTTCCA
15313811 TGCATTCTTAATATG-CT
1 TGCATTCTTAAT-TGTCT
15313828 TGCATT-TTAATTGTTCT
1 TGCATTCTTAATTG-TCT
15313845 TGCATTC
1 TGCATTC
15313852 ATTTTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 2 0.10
16 5 0.24
17 14 0.67
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (17 bp):
TGCATTCTTAATTGTCT
Found at i:15314468 original size:19 final size:20
Alignment explanation
Indices: 15314432--15314474 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
15314422 TCAATCACTT
*
15314432 GAAAAAAAAATGAGAAAGAA
1 GAAAAAAAAATGAAAAAGAA
*
15314452 GAAAGAAAAA-GAAAAAGAA
1 GAAAAAAAAATGAAAAAGAA
15314471 -AAAA
1 GAAAA
15314475 TTGCTGAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 3 0.15
19 8 0.40
20 9 0.45
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (20 bp):
GAAAAAAAAATGAAAAAGAA
Found at i:15314474 original size:7 final size:6
Alignment explanation
Indices: 15314432--15314473 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
15314422 TCAATCACTT
* *
15314432 GAAAAA -AAAAT GAGAAA GAAGAAA GAAAAA GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAA-AAA GAAAAA GAAAAA GAAAAA
15314474 ATTGCTGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 4 0.13
6 20 0.67
7 6 0.20
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (6 bp):
GAAAAA
Found at i:15318325 original size:7 final size:7
Alignment explanation
Indices: 15318313--15318339 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
15318303 AAATCAAATC
15318313 TGTTGAG
1 TGTTGAG
15318320 TGTTGAG
1 TGTTGAG
15318327 TGTTGAG
1 TGTTGAG
15318334 TGTTGA
1 TGTTGA
15318340 ATATTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (7 bp):
TGTTGAG
Found at i:15327235 original size:27 final size:27
Alignment explanation
Indices: 15327168--15327317 Score: 221
Period size: 27 Copynumber: 5.6 Consensus size: 27
15327158 CTGAAGGCTT
* *
15327168 GAGCATTATTCTGATTCTGGCTCAAAA
1 GAGCGTTATTCTGATTCTGGCTCGAAA
* * * *
15327195 GA-TGTTATTTTGATTTTAGCTCGAAA
1 GAGCGTTATTCTGATTCTGGCTCGAAA
15327221 GAGCGTTATTCTGATTCTGGCTCGAAA
1 GAGCGTTATTCTGATTCTGGCTCGAAA
15327248 GAGCGTTATTCTGATTCTGGCTCGAAA
1 GAGCGTTATTCTGATTCTGGCTCGAAA
*
15327275 GAGCATTATTCTGATTCTGGCTCGAAA
1 GAGCGTTATTCTGATTCTGGCTCGAAA
*
15327302 GAGCGTTATTTTGATT
1 GAGCGTTATTCTGATT
15327318 TTGGGCTCAT
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 20 0.18
27 89 0.82
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (27 bp):
GAGCGTTATTCTGATTCTGGCTCGAAA
Found at i:15327384 original size:24 final size:24
Alignment explanation
Indices: 15327319--15327401 Score: 87
Period size: 24 Copynumber: 3.5 Consensus size: 24
15327309 ATTTTGATTT
*
15327319 TGGGCTCATAAGAGCTAACCATTC
1 TGGGCTCGTAAGAGCTAACCATTC
* * *
15327343 TAGGCTTGTCAA-AGCTAACCATTT
1 TGGGCTCGT-AAGAGCTAACCATTC
* *
15327367 TGGGCTCGTAAGAACTAATCATTC
1 TGGGCTCGTAAGAGCTAACCATTC
*
15327391 TGTGCTCGTAA
1 TGGGCTCGTAA
15327402 TGAGTTAAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
23 2 0.04
24 43 0.91
25 2 0.04
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
TGGGCTCGTAAGAGCTAACCATTC
Found at i:15345591 original size:12 final size:12
Alignment explanation
Indices: 15345574--15345603 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15345564 TCCCTCAACA
15345574 TTAGCCCCCTTC
1 TTAGCCCCCTTC
*
15345586 TTAGCCTCCTTC
1 TTAGCCCCCTTC
15345598 TTAGCC
1 TTAGCC
15345604 ATATTAGCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.43, G:0.10, T:0.37
Consensus pattern (12 bp):
TTAGCCCCCTTC
Found at i:15347477 original size:21 final size:21
Alignment explanation
Indices: 15347453--15347503 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
15347443 GACATAATAC
15347453 TACCGATACAAGT-ATGACTTA
1 TACCGATACAAGTCATG-CTTA
* * *
15347474 TACCGAAACATGTCATGCTTC
1 TACCGATACAAGTCATGCTTA
15347495 TACCGATAC
1 TACCGATAC
15347504 TAAAAACTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 22 0.88
22 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (21 bp):
TACCGATACAAGTCATGCTTA
Found at i:15349249 original size:19 final size:20
Alignment explanation
Indices: 15349209--15349250 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
15349199 ACAAAAGACT
*
15349209 AATAAATAAAACTGAACATA
1 AATAAATAAAACTGAAAATA
15349229 AATAAA-AAAACT-AAAAGTA
1 AATAAATAAAACTGAAAA-TA
15349248 AAT
1 AAT
15349251 GACAGAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 3 0.15
19 11 0.55
20 6 0.30
ACGTcount: A:0.69, C:0.07, G:0.05, T:0.19
Consensus pattern (20 bp):
AATAAATAAAACTGAAAATA
Found at i:15350577 original size:22 final size:22
Alignment explanation
Indices: 15350552--15350594 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
15350542 AAAATATTTC
*
15350552 ATTA-ATAATTTGGGTTTAATTA
1 ATTATATAAATTGGG-TTAATTA
*
15350574 ATTATTTAAATTGGGTTAATT
1 ATTATATAAATTGGGTTAATT
15350595 TTATTCTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
ATTATATAAATTGGGTTAATTA
Found at i:15357912 original size:30 final size:31
Alignment explanation
Indices: 15357859--15357918 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
15357849 CTAATTAAGT
* *
15357859 TTTAAAATTTTTAAATTTCATTTTTTTGTTG
1 TTTAAAATTTTTAAATTTAATTTTTATGTTG
*
15357890 TTTAAAA-TTTTAATTTTAATTTTTATGTT
1 TTTAAAATTTTTAAATTTAATTTTTATGTT
15357919 AATAAAGGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (31 bp):
TTTAAAATTTTTAAATTTAATTTTTATGTTG
Found at i:15361570 original size:22 final size:22
Alignment explanation
Indices: 15361545--15361587 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
15361535 AAAATATTTC
*
15361545 ATTA-ATAATTTGGGTTTAATTA
1 ATTATATAAATTGGG-TTAATTA
*
15361567 ATTATTTAAATTGGGTTAATT
1 ATTATATAAATTGGGTTAATT
15361588 TTATTCTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
ATTATATAAATTGGGTTAATTA
Found at i:15370178 original size:18 final size:18
Alignment explanation
Indices: 15370157--15370192 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15370147 ATTAATATTC
15370157 ATAAAAATAAATAAATAA
1 ATAAAAATAAATAAATAA
* *
15370175 ATAAAAATTAATACATAA
1 ATAAAAATAAATAAATAA
15370193 TCCTAATCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (18 bp):
ATAAAAATAAATAAATAA
Found at i:15372918 original size:6 final size:7
Alignment explanation
Indices: 15372878--15372915 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
15372868 CACCAATTAC
15372878 TTAGCTT
1 TTAGCTT
15372885 TTAGCTT
1 TTAGCTT
15372892 TTAGCTT
1 TTAGCTT
*
15372899 TTAGTTT
1 TTAGCTT
15372906 TTAG-TT
1 TTAGCTT
15372912 TTAG
1 TTAG
15372916 TTTATTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
6 6 0.20
7 24 0.80
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.61
Consensus pattern (7 bp):
TTAGCTT
Found at i:15376688 original size:37 final size:37
Alignment explanation
Indices: 15376647--15376732 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
15376637 GGCGACAGTT
* * * * *
15376647 TTTGGGCGCAATCTAGAGGTGCTCATTCGGTGACATG
1 TTTGGGCGCAATATAAAAGTGCTCATGCAGTGACATG
*
15376684 TTTGGGCACAATATAAAAGTGCTCATGCAGTGACATG
1 TTTGGGCGCAATATAAAAGTGCTCATGCAGTGACATG
15376721 TTTGGGCGCAAT
1 TTTGGGCGCAAT
15376733 TCTGGATTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (37 bp):
TTTGGGCGCAATATAAAAGTGCTCATGCAGTGACATG
Found at i:15379414 original size:21 final size:21
Alignment explanation
Indices: 15379381--15379427 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
15379371 AATCCTAAAG
*
15379381 TGGAGAGAAAAGGATGGTGAGA
1 TGGAGAGAAAAGG-GGGTGAGA
15379403 -GGAGA-AATAAGGGGGTGAGA
1 TGGAGAGAA-AAGGGGGTGAGA
15379423 TGGAG
1 TGGAG
15379428 TGGGACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.38, C:0.00, G:0.49, T:0.13
Consensus pattern (21 bp):
TGGAGAGAAAAGGGGGTGAGA
Found at i:15381696 original size:12 final size:12
Alignment explanation
Indices: 15381676--15381720 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
15381666 GGGTATCTTC
15381676 TTGTTTTTCATT
1 TTGTTTTTCATT
*
15381688 TTCTTTTTC-TT
1 TTGTTTTTCATT
15381699 CTTGTTTTTCATT
1 -TTGTTTTTCATT
15381712 TTGTTTTTC
1 TTGTTTTTC
15381721 CTCTTGAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 2 0.07
12 25 0.86
13 2 0.07
ACGTcount: A:0.04, C:0.13, G:0.07, T:0.76
Consensus pattern (12 bp):
TTGTTTTTCATT
Found at i:15381703 original size:24 final size:24
Alignment explanation
Indices: 15381671--15381726 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
15381661 TGTATGGGTA
15381671 TCTTCTTGTTTTTCATTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCTTTT
*
15381695 TCTTCTTGTTTTTCATTTTGTTTT
1 TCTTCTTGTTTTTCATTTTCTTTT
*
15381719 TCCTCTTG
1 TCTTCTTG
15381727 AGAACTCTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.04, C:0.18, G:0.07, T:0.71
Consensus pattern (24 bp):
TCTTCTTGTTTTTCATTTTCTTTT
Found at i:15393129 original size:21 final size:21
Alignment explanation
Indices: 15393103--15393143 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15393093 GTCGATCAAT
15393103 ACAAGTGACT-CTTCTACCGAA
1 ACAAGT-ACTACTTCTACCGAA
*
15393124 ACAAGTATTACTTCTACCGA
1 ACAAGTACTACTTCTACCGA
15393144 TACTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (21 bp):
ACAAGTACTACTTCTACCGAA
Found at i:15393954 original size:52 final size:52
Alignment explanation
Indices: 15393881--15394066 Score: 300
Period size: 52 Copynumber: 3.6 Consensus size: 52
15393871 ATTTCATTTA
* *
15393881 ATACTCACGATGACACATAGTCATCAGACCTCTTAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * * *
15393933 ACACTCACGATGACACATAGTCATTGAACCTCATAATTCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
15393985 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
15394037 ATGCTCATGATGACACATAGTCATCGGACC
1 ATACTCACGATGACACATAGTCATCGGACC
15394067 CTTTTCATTT
Statistics
Matches: 122, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 122 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:15400315 original size:21 final size:21
Alignment explanation
Indices: 15400263--15400337 Score: 73
Period size: 21 Copynumber: 3.6 Consensus size: 21
15400253 ATAGTTTAGA
* *
15400263 CTTCTACTGATACAAGTGACA
1 CTTCTACCGATACAAGTGACT
* * *
15400284 GTTTTATCGATACAAGTGACT
1 CTTCTACCGATACAAGTGACT
*
15400305 CTTCTACCGATAC-AGT-ATT
1 CTTCTACCGATACAAGTGACT
15400324 ACTTCTACCGATAC
1 -CTTCTACCGATAC
15400338 TAAAAACTCT
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
19 2 0.05
20 16 0.36
21 26 0.59
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.33
Consensus pattern (21 bp):
CTTCTACCGATACAAGTGACT
Found at i:15401154 original size:52 final size:52
Alignment explanation
Indices: 15401076--15401257 Score: 337
Period size: 52 Copynumber: 3.5 Consensus size: 52
15401066 CGTTTAATAT
* *
15401076 TCACGATGACACATAGTCATCGGACCTCTTAATCCGTAAAGGAATCATATAC
1 TCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATAC
*
15401128 TCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATACAC
1 TCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATAC
15401180 TCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATAC
1 TCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATAC
15401232 TCACGATGACACATAGTCATCGGACC
1 TCACGATGACACATAGTCATCGGACC
15401258 CTTTTCATTT
Statistics
Matches: 126, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 126 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (52 bp):
TCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATAC
Found at i:15402119 original size:20 final size:21
Alignment explanation
Indices: 15402094--15402132 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15402084 TAGACTTTCA
*
15402094 TCATTAA-CTTATTTAATCAC
1 TCATTAACCTTAATTAATCAC
15402114 TCATTAACCTTAATTAATC
1 TCATTAACCTTAATTAATC
15402133 CTATTTATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (21 bp):
TCATTAACCTTAATTAATCAC
Found at i:15402415 original size:61 final size:61
Alignment explanation
Indices: 15402320--15402446 Score: 236
Period size: 61 Copynumber: 2.1 Consensus size: 61
15402310 AGGCTGTTAC
*
15402320 ATCATTTTTGAACTTAGGCATCATGTCGCAACCTACTTCTTTCCTTGTTTAACTTTGTATT
1 ATCATTTTTGAACTTAGGCATCATGTCGCAACCTACTTCTTTCATTGTTTAACTTTGTATT
*
15402381 ATCATTTTTGAACTTAGGCATCATGTCGCAACCTACTTCTTTTATTGTTTAACTTTGTATT
1 ATCATTTTTGAACTTAGGCATCATGTCGCAACCTACTTCTTTCATTGTTTAACTTTGTATT
15402442 ATCAT
1 ATCAT
15402447 ATGCCATGAA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (61 bp):
ATCATTTTTGAACTTAGGCATCATGTCGCAACCTACTTCTTTCATTGTTTAACTTTGTATT
Found at i:15420850 original size:61 final size:60
Alignment explanation
Indices: 15420709--15420873 Score: 191
Period size: 61 Copynumber: 2.8 Consensus size: 60
15420699 AAAAATTGAG
* *
15420709 GTGTTGGCCATGC-AATGGTCGACACCCCTTTTCTGTC-AG-AAAAAA--TACAATTTTTTT
1 GTGTTGGCCAT-CAAATGGTCGACACCCCTTTT-TCTCGAGAAAAAAATTTACAAATTTTTT
* *
15420766 GTGTTGGTCATCAAATGGCCGACACCCCTTTTTCTCGAGAAAAAAATTTTA-AAATTTTTT
1 GTGTTGGCCATCAAATGGTCGACACCCCTTTTTCTCGAGAAAAAAA-TTTACAAATTTTTT
* *
15420826 GATTTTGGCCATCAAATGGTCGACACCCCCTTTTCTCGA-AAAAAAATT
1 G-TGTTGGCCATCAAATGGTCGACACCCCTTTTTCTCGAGAAAAAAATT
15420874 GCATTTTTTG
Statistics
Matches: 93, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
56 4 0.04
57 30 0.32
58 6 0.06
59 2 0.02
60 16 0.17
61 35 0.38
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (60 bp):
GTGTTGGCCATCAAATGGTCGACACCCCTTTTTCTCGAGAAAAAAATTTACAAATTTTTT
Found at i:15420981 original size:58 final size:59
Alignment explanation
Indices: 15420915--15421041 Score: 161
Period size: 58 Copynumber: 2.2 Consensus size: 59
15420905 TTACGGTCTT
* * *
15420915 ACCAAAAAATTTTGAAATTTTTTTTCGA-GAAAAGGGGGTGTCGGCCATTTG-ATGGCCAAC
1 ACCAAAAAA-ATTG-AATTTTTTTTCGACAAAAAAGGGGTGTCGGCCA-TTGCATGGCCAAC
* *
15420975 A-CAAAAAAATTGTATTTTTTTTTGACAAAAAAGGGGTGTCGGCCATTGCATGGCCAAC
1 ACCAAAAAAATTGAATTTTTTTTCGACAAAAAAGGGGTGTCGGCCATTGCATGGCCAAC
15421033 ACCAAAAAA
1 ACCAAAAAA
15421042 CACAAATTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
57 14 0.24
58 30 0.51
59 14 0.24
60 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (59 bp):
ACCAAAAAAATTGAATTTTTTTTCGACAAAAAAGGGGTGTCGGCCATTGCATGGCCAAC
Found at i:15424124 original size:56 final size:56
Alignment explanation
Indices: 15424054--15424265 Score: 214
Period size: 56 Copynumber: 3.8 Consensus size: 56
15424044 GATGATTTGA
* * * * * *
15424054 TTCTAGCTTAGGTAGAGTGATATCTTGAATCTTGCTCGGGTAGAGCATTATTCCAC
1 TTCTGGCTTGGGTAGAGCGATATCTTGAATCTTGCTCAGGTAGAGCATTATTCTAT
*
15424110 TTCTGGCTTGGGTAGAGCGATATATTGAATCTTGCTCAGGTAGAGCATTATTCTAT
1 TTCTGGCTTGGGTAGAGCGATATCTTGAATCTTGCTCAGGTAGAGCATTATTCTAT
* * * * * *
15424166 TTTTGGCTCGAGTAGAGTGTTATAC-TGAAT-TCTGCTCACGTAGAGCATTATTCTAT
1 TTCTGGCTTGGGTAGAGCGATAT-CTTGAATCT-TGCTCAGGTAGAGCATTATTCTAT
* * * * * *
15424222 TTTTGGCTAGGGTAGAGCGTTATCCTGATTCTGGCTC-GGTAGAG
1 TTCTGGCTTGGGTAGAGCGATATCTTGAATCTTGCTCAGGTAGAG
15424266 TGTTAATTTG
Statistics
Matches: 132, Mismatches: 20, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
55 8 0.06
56 123 0.93
57 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.37
Consensus pattern (56 bp):
TTCTGGCTTGGGTAGAGCGATATCTTGAATCTTGCTCAGGTAGAGCATTATTCTAT
Found at i:15424151 original size:28 final size:28
Alignment explanation
Indices: 15424038--15424155 Score: 89
Period size: 28 Copynumber: 4.2 Consensus size: 28
15424028 AAGGCTCGGA
* * *
15424038 TAGAGCGATGAT-TTGATTCTAGCTTAGG
1 TAGAGCGAT-ATATTGAATCTTGCTCAGG
* * *
15424066 TAGAGTGATATCTTGAATCTTGCTCGGG
1 TAGAGCGATATATTGAATCTTGCTCAGG
* * * **
15424094 TAGAGC-AT-TATTCCACTTCTGGCTTGGG
1 TAGAGCGATATATT-GA-ATCTTGCTCAGG
15424122 TAGAGCGATATATTGAATCTTGCTCAGG
1 TAGAGCGATATATTGAATCTTGCTCAGG
15424150 TAGAGC
1 TAGAGC
15424156 ATTATTCTAT
Statistics
Matches: 69, Mismatches: 16, Indels: 10
0.73 0.17 0.11
Matches are distributed among these distances:
26 3 0.04
27 5 0.07
28 54 0.78
29 3 0.04
30 4 0.06
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGAGCGATATATTGAATCTTGCTCAGG
Found at i:15424174 original size:28 final size:29
Alignment explanation
Indices: 15424087--15424265 Score: 101
Period size: 28 Copynumber: 6.4 Consensus size: 29
15424077 CTTGAATCTT
* * *
15424087 GCTCGGGTAGAGCATTATTC-CACTTCTG
1 GCTCAGGTAGAGCATTATTCTGATTTCTG
** * *
15424115 GCTTGGGTAGAGCGA-TATAT-TGA-ATCTT
1 GCTCAGGTAGAGC-ATTAT-TCTGATTTCTG
*
15424143 GCTCAGGTAGAGCATTATTCT-ATTTTTG
1 GCTCAGGTAGAGCATTATTCTGATTTCTG
** * *
15424171 GCTC-GAGTAGAGTGTTATACTGAATTCT-
1 GCTCAG-GTAGAGCATTATTCTGATTTCTG
* *
15424199 GCTCACGTAGAGCATTATTCT-ATTTTTG
1 GCTCAGGTAGAGCATTATTCTGATTTCTG
* *
15424227 GCT-AGGGTAGAGCGTTATCCTGA-TTCTG
1 GCTCA-GGTAGAGCATTATTCTGATTTCTG
15424255 GCTC-GGTAGAG
1 GCTCAGGTAGAG
15424266 TGTTAATTTG
Statistics
Matches: 114, Mismatches: 24, Indels: 27
0.69 0.15 0.16
Matches are distributed among these distances:
27 16 0.14
28 90 0.79
29 8 0.07
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (29 bp):
GCTCAGGTAGAGCATTATTCTGATTTCTG
Found at i:15424292 original size:27 final size:27
Alignment explanation
Indices: 15424250--15424315 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
15424240 GTTATCCTGA
* **
15424250 TTCTGGCTCG-GTAGAGTGTTAATTTG
1 TTCTGGCTCGAGAAGAGCATTAATTTG
*
15424276 TTCTGGCTCGAGAAGAGCATTATTTTG
1 TTCTGGCTCGAGAAGAGCATTAATTTG
15424303 TATCTGGGCTCGA
1 T-TCT-GGCTCGA
15424316 ATGAAACTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 10 0.30
27 13 0.39
28 3 0.09
29 7 0.21
ACGTcount: A:0.18, C:0.15, G:0.29, T:0.38
Consensus pattern (27 bp):
TTCTGGCTCGAGAAGAGCATTAATTTG
Found at i:15435586 original size:19 final size:19
Alignment explanation
Indices: 15435562--15435599 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
15435552 AATATTTTTT
15435562 TATTTTT-TTATTTTTCTCG
1 TATTTTTCTT-TTTTTCTCG
15435581 TATTTTTCTTTTTTTCTCG
1 TATTTTTCTTTTTTTCTCG
15435600 ACTTTTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.08, C:0.13, G:0.05, T:0.74
Consensus pattern (19 bp):
TATTTTTCTTTTTTTCTCG
Found at i:15439367 original size:28 final size:27
Alignment explanation
Indices: 15439336--15439520 Score: 113
Period size: 28 Copynumber: 6.6 Consensus size: 27
15439326 CCTAAATCTT
15439336 GCTCGGGTAGAGCATTATTCCACTTCTG
1 GCTCGGGTAGAGCATTATTCCA-TTCTG
* ** * *
15439364 GCTCGGGTATAGCATTATATTGAATCTT
1 GCTCGGGTAGAGCATTAT-TCCATTCTG
* * *
15439392 ACTCGGGTAGAGCATTATTCTATTTCTA
1 GCTCGGGTAGAGCATTATTCCA-TTCTG
* ** * * * *
15439420 GCTCGAGTAGAGTGTTATACTGA-ACATT
1 GCTCGGGTAGAGCATTATTC-CATTC-TG
*
15439448 GCTCGGGTAGAGCATTATTCTATTTCTG
1 GCTCGGGTAGAGCATTATTCCA-TTCTG
* *
15439476 GCTCGGGTATAGCGTTA-TCCTGATTCTG
1 GCTCGGGTAGAGCATTATTCC--ATTCTG
*
15439504 GCTCGAGTAGAGCATTA
1 GCTCGGGTAGAGCATTA
15439521 ATTTGTTCAG
Statistics
Matches: 117, Mismatches: 32, Indels: 16
0.71 0.19 0.10
Matches are distributed among these distances:
27 6 0.05
28 106 0.91
29 5 0.04
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.35
Consensus pattern (27 bp):
GCTCGGGTAGAGCATTATTCCATTCTG
Found at i:15439391 original size:56 final size:56
Alignment explanation
Indices: 15439302--15439520 Score: 253
Period size: 56 Copynumber: 3.9 Consensus size: 56
15439292 TTATGATCTG
* * * * * *
15439302 ATTT-TGGCTCAGGTAGAGCGATATCCTAAATCTTGCTCGGGTAGAGCATTATTCC
1 ATTTCTGGCTCGGGTATAGCGTTATACTGAATCTTGCTCGGGTAGAGCATTATTCT
* * * *
15439357 ACTTCTGGCTCGGGTATAGCATTATATTGAATCTTACTCGGGTAGAGCATTATTCT
1 ATTTCTGGCTCGGGTATAGCGTTATACTGAATCTTGCTCGGGTAGAGCATTATTCT
* * * *
15439413 ATTTCTAGCTCGAGTAGAGTGTTATACTGAA-CATTGCTCGGGTAGAGCATTATTCT
1 ATTTCTGGCTCGGGTATAGCGTTATACTGAATC-TTGCTCGGGTAGAGCATTATTCT
* * * *
15439469 ATTTCTGGCTCGGGTATAGCGTTATCCTGATTCTGGCTCGAGTAGAGCATTA
1 ATTTCTGGCTCGGGTATAGCGTTATACTGAATCTTGCTCGGGTAGAGCATTA
15439521 ATTTGTTCAG
Statistics
Matches: 135, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
55 4 0.03
56 130 0.96
57 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (56 bp):
ATTTCTGGCTCGGGTATAGCGTTATACTGAATCTTGCTCGGGTAGAGCATTATTCT
Found at i:15439560 original size:27 final size:26
Alignment explanation
Indices: 15439454--15439560 Score: 81
Period size: 28 Copynumber: 3.9 Consensus size: 26
15439444 CATTGCTCGG
* *
15439454 GTAGAGCATTATTCTATTTCTGGCTCGG
1 GTAGAGCATTAATCTA-TTCTGGCTC-A
* *
15439482 GTATAGCGTT-ATCCTGATTCTGGCTCGA
1 GTAGAGCATTAAT-CT-ATTCTGGCTC-A
* * *
15439510 GTAGAGCATTAATTTGTTCAGGCTCA
1 GTAGAGCATTAATCTATTCTGGCTCA
*
15439536 GTTAGAGCGTTAATCTATTCTGGCT
1 G-TAGAGCATTAATCTATTCTGGCT
15439561 TGGAAAGAGC
Statistics
Matches: 62, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
26 2 0.03
27 28 0.45
28 29 0.47
29 3 0.05
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (26 bp):
GTAGAGCATTAATCTATTCTGGCTCA
Found at i:15442696 original size:28 final size:28
Alignment explanation
Indices: 15442664--15442774 Score: 125
Period size: 28 Copynumber: 3.9 Consensus size: 28
15442654 TGGTAGTTCG
*
15442664 TCAGGACGTTCTTAAATGTGGAAGTCTA
1 TCAGGACGTTCTTAAATGTGGAAGTCCA
* *
15442692 TCAGGACGTCCTTAAATGTGGAAGTCCG
1 TCAGGACGTTCTTAAATGTGGAAGTCCA
* *
15442720 TCATGGTA-TTATCGTAAATGTGGAAGTCCA
1 TCA-GG-ACGT-TCTTAAATGTGGAAGTCCA
* *
15442750 TTAGAACGTTCTTAAATGTGGAAGT
1 TCAGGACGTTCTTAAATGTGGAAGT
15442775 TTGTTTGGGT
Statistics
Matches: 68, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 44 0.65
29 5 0.07
30 19 0.28
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (28 bp):
TCAGGACGTTCTTAAATGTGGAAGTCCA
Found at i:15445981 original size:34 final size:34
Alignment explanation
Indices: 15445943--15446034 Score: 175
Period size: 34 Copynumber: 2.7 Consensus size: 34
15445933 GTTATAGTGT
*
15445943 TTTGGTGTGTTGGATGGACTAGCTCTTACGTGCA
1 TTTGGTGTGTTGGATGGACTAGCTCTTACGAGCA
15445977 TTTGGTGTGTTGGATGGACTAGCTCTTACGAGCA
1 TTTGGTGTGTTGGATGGACTAGCTCTTACGAGCA
15446011 TTTGGTGTGTTGGATGGACTAGCT
1 TTTGGTGTGTTGGATGGACTAGCT
15446035 AAGAGTTTAA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.15, C:0.13, G:0.34, T:0.38
Consensus pattern (34 bp):
TTTGGTGTGTTGGATGGACTAGCTCTTACGAGCA
Found at i:15446584 original size:215 final size:214
Alignment explanation
Indices: 15446033--15447614 Score: 1775
Period size: 215 Copynumber: 7.4 Consensus size: 214
15446023 GATGGACTAG
* * * * * *
15446033 CTAAGAGT-TT-AAGGCGATCCATTCCTTCAAGCAATTTTCCAAACATTCCATGCTCGAGAAATC
1 CTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * *
15446096 GCATTATTTGGTTAAAATAGTTTGTCATTTTGTAAA-AACCTTTTGGTCTTTGAATTAAAAACGT
66 GCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTT
* * ** * *
15446160 ATTTACATGAGAATTGTTTCTCTTTTTATTCTTGGACGAACTTCTGAACTTGTCAAACATTTACT
130 ATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACG
15446225 AGTTCTTTTATAACTTTGGTT
194 AGTTCTTTTATAACTTTGGTT
* * ** *
15446246 CTTGAGAGTATTCAAGACGATGCATTCCTTCGACCAATTTTTCGAACATTAAATGCTCAGGAAAT
1 C-TAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAAT
*
15446311 CGCATCATTTGGTTTAAAA-AGTTTGTCATTTTGTAAACAACTTTTGGT-TTTAGAATTAAAAAC
65 CGCATCATTTGG-TCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT-GAATTAAAAAC
* * *
15446374 TAATTTACGTGTGAATTGTTTCTCCATTGGTTCTTGGACGAACTTCCGAACTTGTTAAACATTTA
128 TTATTTACGTGAGAATTGTTTCTCC-TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTA
*
15446439 CGAGTTTTTTTATAACTTTGGTT
192 CGAGTTCTTTTATAACTTTGGTT
* * * **
15446462 CTAAGAGTATTCAAGACGATCCATTCCTTTGACCAATTTTTCGAAGATTCCATGATCAAGAAATC
1 CTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * *
15446527 TCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTTGTCTTTGAATT-AAAACTTT
66 GCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * ** *
15446591 TTTACGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAGCTTGTTTAACATTTACTA
131 TTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGA
15446656 GTTCTTTTATAACTTTGGTT
195 GTTCTTTTATAACTTTGGTT
* * * * ** *
15446676 CTTGATATTAGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATAATCGAGAAAT
1 C-TAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAAT
*
15446741 CGCATCATTTGGT-ATAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
65 CGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * *
15446805 TTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTGAAACATTTACG
130 ATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACG
* *
15446870 AGTTCTTTTATAACTTCGATT
194 AGTTCTTTTATAACTTTGGTT
* * * * * **
15446891 CCTGAGAGTATTCAAGACGATGCATTCATTTGAGCAATTTGCCGAACATTCCATGCT-GGGAAAT
1 -CTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * * * * *
15446955 CACATCATTTGGTCTAAATAGTTTATCATTTTGTACATAACTTTTGGTCTTTGAATTAAAAGCTT
65 CGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * *
15447020 TTTTACGTGAGAATTGTTTCTCTATTGGTTCTTAGACGAACTTCCGAACTCGTCAAACATTTTCG
130 ATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACG
15447085 AGTTCTTTTATAAC-----TT
194 AGTTCTTTTATAACTTTGGTT
* *
15447101 -T--G-G-------GACGATCCATTCCTTTGACCAATTTTTCGAACATTCCTTGC-CTGGGAAAT
1 CTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC-GGGAAAT
* * * * *
15447154 CACATCATTTGGTCTAAAA-AGTTTGTAATTTTGTAAATAACTTTTGGTCTTTAAATTAAATACT
65 CGCATCATTTGGTC-AAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * * **
15447218 TATTTACATGAGAATTGTTTCCCTCTTGGTTCTTGGATGAACATACGACCTAGTCAAAGTTTTAC
129 TATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
* *
15447283 AAGTTCTTTTATAACTATGGTT
193 GAGTTCTTTTATAACTTTGGTT
* * ** *
15447305 CCTTAA-AGTATTCAAGATGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGAT-GGGAAA
1 -C-TAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAA
* * *
15447368 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTATAAACT
64 TCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* ** *
15447433 TATTTATGTGAGAATTGTCGCTCTCTTGGTTCTTGGACGAACTTCCTAACTTGTCAAACATTTAC
129 TATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
*
15447498 GCA-TTCTTTTATAACTTCGGTT
193 G-AGTTCTTTTATAACTTTGGTT
* * * ** *
15447520 CCTAAGAGTATTTAAGACGATCCATTCCTTCGACTAATTTTTCGAAAATTTAATGCTCAGGAAAT
1 -CTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAAT
* *
15447585 CGCATCACTTGGTTTAAAA-AGTTTGTCATT
65 CGCATCATTTGG-TCAAAATAGTTTGTCATT
15447615 GATGTGAGCA
Statistics
Matches: 1168, Mismatches: 160, Indels: 79
0.83 0.11 0.06
Matches are distributed among these distances:
198 35 0.03
199 126 0.11
200 3 0.00
204 2 0.00
205 1 0.00
206 1 0.00
207 1 0.00
208 1 0.00
209 1 0.00
210 2 0.00
213 1 0.00
214 159 0.14
215 587 0.50
216 236 0.20
217 12 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (214 bp):
CTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATC
GCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAG
TTCTTTTATAACTTTGGTT
Found at i:15446901 original size:430 final size:429
Alignment explanation
Indices: 15446033--15447614 Score: 1926
Period size: 414 Copynumber: 3.7 Consensus size: 429
15446023 GATGGACTAG
* ** * *
15446033 CTAAGAGT-TT-AAGGCGATCCATTCCTTCAAGCAATTTTCCAAACATTCCATGCTCGAGAAATC
1 CTAAGAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGAT-GAGAAATC
* * *
15446096 GCATTATTTGGTTAAAATAGTTTGTCATTTTGTAAA-AACCTTTTGGTCTTTGAATTAAAAACGT
65 GCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAA-CTTTTGGTCTTTGAATT-AAAACTT
* * ** *
15446160 ATTTACATGAGAATTGTTTCTCTTTTTATTCTTGGACGAACTTCTGAACTTGTCAAACATTTACT
128 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACT
* *
15446225 AGTTCTTTTATAACTTTGGTTCTTGAGAGTATTCAAGACGATGCATTCCTTCGACCAATTTTTCG
193 AGTTCTTTTATAACTTTGGTTCTTGAGAGTAGTCAAGACGATCCATTCCTTCGACCAATTTTTCG
*
15446290 AACATTAAATGCTCAGGAAATCGCATCATTTGGTTTAAAAAGTTTGTCATTTTGTAAACAACTTT
258 AACATTCAATGCTCAGGAAATCGCATCATTTGGTTTAAAAAGTTTGTCATTTTGTAAACAACTTT
* * * *
15446355 TGGT-TTTAGAATTAAAAACTAATTTACGTGTGAATTGTTTCTC-CATTGGTTCTTGGACGAACT
323 TGGTCTTT-GAATTAAAAACTTATTTACGAGAGAATTGTTTCTCTC-TTGGTTCTTGGATGAACT
* * *
15446418 TCCGAACTTGTTAAACATTTACGAGTTTTTTTATAACTTTGGTT-
386 TACGAACTTGTCAAACATTTACGAGTTCTTTTATAAC-TTGGTTC
* * * *
15446462 CTAAGAGTATTCAAGACGATCCATTCCTTTGACCAATTTTTCGAAGATTCCATGATCAAGAAATC
1 CTAAGAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGAT-GAGAAATC
* * *
15446527 TCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTTGTCTTTGAATTAAAACTTTT
65 GCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAACTTAT
* * **
15446592 TTACGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAGCTTGTTTAACATTTACTAG
130 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACTAG
* *
15446657 TTCTTTTATAACTTTGGTTCTTGATATTAGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAA
195 TTCTTTTATAACTTTGGTTCTTGAGAGTAGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAA
* ** * *
15446722 CATTCCATAATC-GAGAAATCGCATCATTTGGTAT-AATAGTTTGTCATTTTGTAAACAACTTTT
260 CATTCAATGCTCAG-GAAATCGCATCATTTGGTTTAAAAAGTTTGTCATTTTGTAAACAACTTTT
* *
15446785 GGTCTTTGAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTC
324 GGTCTTTGAATTAAAAACTTATTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAC
* *
15446850 GAACTTGTGAAACATTTACGAGTTCTTTTATAACTTCGATTC
389 GAACTTGTCAAACATTTACGAGTTCTTTTATAACTT-GGTTC
* * * * * * *
15446892 CTGAGAGTATTCAAGACGATGCATTCATTTGAGCAATTTGCCGAACATTCCATGCTGGGAAATCA
1 CTAAGAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGATGAGAAATCG
* * * *
15446957 CATCATTTGGTCTAAATAGTTTATCATTTTGTACATAACTTTTGGTCTTTGAATTAAAAGCTTTT
66 CATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAA-CTTAT
* * * * *
15447022 TTACGTGAGAATTGTTTCTCTATTGGTTCTTAGACGAACTTCCGAACTCGTCAAACATTTTCGAG
130 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACTAG
*
15447087 TTCTTTTATAAC------T-TT----G--G----GACGATCCATTCCTTTGACCAATTTTTCGAA
195 TTCTTTTATAACTTTGGTTCTTGAGAGTAGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAA
** * * * * *
15447135 CATTCCTTGC-CTGGGAAATCACATCATTTGGTCTAAAAAGTTTGTAATTTTGTAAATAACTTTT
260 CATTCAATGCTC-AGGAAATCGCATCATTTGGTTTAAAAAGTTTGTCATTTTGTAAACAACTTTT
* * * *
15447199 GGTCTTTAAATTAAATACTTATTTAC-ATGAGAATTGTTTCCCTCTTGGTTCTTGGATGAACATA
324 GGTCTTTGAATTAAAAACTTATTTACGA-GAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTA
* * ** *
15447263 CGACCTAGTCAAAGTTTTACAAGTTCTTTTATAACTATGGTTC
388 CGAACTTGTCAAACATTTACGAGTTCTTTTATAACT-TGGTTC
* * * *
15447306 CTTAA-AGTATTCAAGATGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGATGGGAAATC
1 C-TAAGAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGATGAGAAATC
* * *
15447370 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTATAAACTTA
65 GCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTA-AAACTTA
* ** * *
15447435 TTTATGTGAGAATTGTCGCTCTCTTGGTTCTTGGACGAACTTCCTAACTTGTCAAACATTTACGC
129 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC-T
* * * * * *
15447500 A-TTCTTTTATAACTTCGGTTCCTAAGAGTATTTAAGACGATCCATTCCTTCGACTAATTTTTCG
193 AGTTCTTTTATAACTTTGGTTCTTGAGAGTAGTCAAGACGATCCATTCCTTCGACCAATTTTTCG
* * *
15447564 AAAATTTAATGCTCAGGAAATCGCATCACTTGGTTTAAAAAGTTTGTCATT
258 AACATTCAATGCTCAGGAAATCGCATCATTTGGTTTAAAAAGTTTGTCATT
15447615 GATGTGAGCA
Statistics
Matches: 992, Mismatches: 126, Indels: 68
0.84 0.11 0.06
Matches are distributed among these distances:
412 1 0.00
413 56 0.06
414 292 0.29
415 7 0.01
417 1 0.00
420 1 0.00
421 1 0.00
423 2 0.00
424 1 0.00
425 1 0.00
428 2 0.00
429 186 0.19
430 278 0.28
431 160 0.16
432 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (429 bp):
CTAAGAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGATGAGAAATCG
CATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAACTTATT
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACTAGT
TCTTTTATAACTTTGGTTCTTGAGAGTAGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAAC
ATTCAATGCTCAGGAAATCGCATCATTTGGTTTAAAAAGTTTGTCATTTTGTAAACAACTTTTGG
TCTTTGAATTAAAAACTTATTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGA
ACTTGTCAAACATTTACGAGTTCTTTTATAACTTGGTTC
Found at i:15447290 original size:199 final size:198
Alignment explanation
Indices: 15446906--15447513 Score: 655
Period size: 199 Copynumber: 3.0 Consensus size: 198
15446896 GAGTATTCAA
* * **
15446906 GACGATGCATTCATTTGAGCAATTTGCCGAACATTCCATGCTGGGAAATCACATCATTTGGTCTA
1 GACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTGGGAAATCACATCATTTGGTCTA
* * *
15446971 AATAGTTTATCATTTTGTACATAACTTTTGGTCTTTGAATTAAAAGCTTTTTTACGTGAGAATTG
66 AATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAA-CTTATTTACGTGAGAATTG
* * * * * * *
15447036 TTTCTCTATTGGTTCTTAGACGAACTTCCGAACTCGTCAAACATTTTCGAGTTCTTTTATAACTT
130 TTTCTCTCTTGGTTCTTGGACGAACATACGAACTAGTCAAACATTTTCAAGTTCTTTTATAACTA
15447101 TGG-
195 TGGT
* *
15447104 GACGATCCATTCCTTTGACCAATTTTTCGAACATTCCTTGCCTGGGAAATCACATCATTTGGTCT
1 GACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATG-CTGGGAAATCACATCATTTGGTCT
* * * *
15447169 AAAAAGTTTGTAATTTTGTAAATAACTTTTGGTCTTTAAATTAAATACTTATTTACATGAGAATT
65 AAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAA-ACTTATTTACGTGAGAATT
* * * *
15447234 GTTTCCCTCTTGGTTCTTGGATGAACATACGACCTAGTCAAA-GTTTTACAAGTTCTTTTATAAC
129 GTTTCTCTCTTGGTTCTTGGACGAACATACGAACTAGTCAAACATTTT-CAAGTTCTTTTATAAC
15447298 TATGGTTCCTT
193 TATGG-----T
* * *
15447309 AAAGTATTCAAGATGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGATGGGAAATCGCAT
1 ---G-A--C-----GATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTGGGAAATCACAT
* *
15447374 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTATAAACTTATTTA
55 CATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTA-AAACTTATTTA
* ** * * * * * *
15447439 TGTGAGAATTGTCGCTCTCTTGGTTCTTGGACGAACTTCCTAACTTGTCAAACATTTACGCA-TT
119 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATACGAACTAGTCAAACATTTTC-AAGTT
15447503 CTTTTATAACT
183 CTTTTATAACT
15447514 TCGGTTCCTA
Statistics
Matches: 339, Mismatches: 48, Indels: 29
0.81 0.12 0.07
Matches are distributed among these distances:
198 38 0.11
199 133 0.39
200 1 0.00
208 1 0.00
209 1 0.00
211 1 0.00
215 124 0.37
216 40 0.12
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (198 bp):
GACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTGGGAAATCACATCATTTGGTCTA
AATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAACTTATTTACGTGAGAATTGT
TTCTCTCTTGGTTCTTGGACGAACATACGAACTAGTCAAACATTTTCAAGTTCTTTTATAACTAT
GGT
Found at i:15457829 original size:215 final size:214
Alignment explanation
Indices: 15456991--15459513 Score: 2653
Period size: 215 Copynumber: 11.7 Consensus size: 214
15456981 AAACTAAATG
* *
15456991 GTTTGTCATTTTGTAAACAACTTTTGGT-TTTAAAATTAAAA-ATTAATTTACGTGAGAATTGTT
1 GTTTGTCATTTTGTAAACAACTTTTGGTCTTT-GAATTAAAACCTT-ATTTACGTGAGAATTGTT
* * * * * **
15457054 TCTCTCTTGGTACTTTGACAAACTT-TCGGACTTTTCAAACATTTTTGAGTTCTTTTATAACTTC
64 TCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTC
* * **
15457118 GGTTACTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG-A-A--CCATCCTCAAG
128 GGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTT-GAACATTCCATGCTCGGG
15457179 AAATCGCATCATTTGGTCTAAAAA
192 AAATCGCATCATTTGGTC-AAAAA
* * * * * **
15457203 GTTTGTTATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTAGTTACGTGAAAATTGTCGC
1 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACCTTATTTACGTGAGAATTGTTTC
* * *
15457268 TCTCTTGGTTCTTGGACGAACTT-TCAAACTTGTCAAACATTTACGAGTTCTTTTATAATTTTGG
66 TCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGG
* * * ** *
15457332 TTTCTAAGAGTACTT-AAGACGATCCATTCCTTTGACTTATTTTCCT-AACATTTCATGCTCGGG
130 TTCCTGAGAGTA-TTCAAGACGATCCATTCCTTCGACCAATTTT--TGAACATTCCATGCTCGGG
*
15457395 AAATCGCATCACTTGGTCTAAAAA
192 AAATCGCATCATTTGGTC-AAAAA
* * * * * * *
15457419 GTTAGTCATTTTGTAAATAACTTTTGGTCTTTGATTTAAAAACTTTTTTATGAGAGAATTG-TT-
1 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACCTTATTTACGTGAGAATTGTTTC
* * ** * * *
15457482 TCTCTTGATTCTTTGACGAACTTCCAAACTTGTTAAACATTTATGAGTT-TTTTATAACTTCTGT
66 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGT
* * * * * * * *
15457546 TCCTAAGAGTATTCAAGATGATCCATTCATTTGACCAATTTTTCGAAGATTCCATGATCAGAAAA
131 TCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTT-GAACATTCCATGCTCGGGAAA
15457611 TCGCATCATTTGGTCAAAATA
195 TCGCATCATTTGGTCAAAA-A
* * * * * * *
15457632 GTTTATCATTTTGTAAATAACTTTTGGTCTTTCAATGAGAAACCTT-TTTACGAGAGAATTCTTA
1 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA-AAACCTTATTTACGTGAGAATTGTTT
** *
15457696 CTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTATTAGTTCTTTTATAACTTCGA
65 CTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGG
* * * * *
15457761 TTCCTGATAGTACTCAAGATGATCCATTCCTTCGACCAATTTTTGAACATTCCATGATTGGGAAA
130 TTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTGAACATTCCATGCTCGGGAAA
*
15457826 TCGCATTATTTGGTCTAAAAA
195 TCGCATCATTTGGTC-AAAAA
* * *
15457847 ATTTTTCATTTTGTAAACAACTTTTGGTCATTGAATTAAATA-CTTATTTACGTGAGAATTGTTT
1 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA-ACCTTATTTACGTGAGAATTGTTT
* * * * * *
15457911 CCCTCTTGGTTCTTGGATGAACATAC-GAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCG
65 CTCTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCG
* * * * *
15457975 ATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCAAACATTCCATCCTCGGAA
129 GTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTT-GAACATTCCATGCTCGGGA
* * *
15458040 AATTGCATCAATTGGTGTAAAAA
193 AATCGCATCATTTGGT-CAAAAA
* * **
15458063 GTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTCGC
1 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACCTTATTTACGTGAGAATTGTTTC
* * *
15458128 TCTCTTGGTTCTTGGACGAACTT-TCGAAATTGTCAAACATTTACGAGTTCTTTTATAACTTTGA
66 TCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGG
* * ** * *
15458192 TTTCTGAGAATACTT-AAGACGATCCATTCCTTCGACTTATTTTTCGAACATTTCGTGCTCGGGA
130 TTCCTGAGAGTA-TTCAAGACGATCCATTCCTTCGACCAATTTTT-GAACATTCCATGCTCGGGA
* * *
15458256 AATTGCATCACTTGGTCTAAAAG
193 AATCGCATCATTTGGTC-AAAAA
* * **
15458279 GTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAA-CTTACTTACGTGAGAATTGTCGC
1 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACCTTATTTACGTGAGAATTGTTTC
* * * *
15458343 TCTCTTAGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTAGGT
66 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGT
** ** ** *
15458408 TTTTGAGAGTACTT-AAGACGATCCATTCCTTCGACTTATTTTCAAAACATTTCATGCTCGGGAA
131 TCCTGAGAGTA-TTCAAGACGATCCATTCCTTCGACCAATTTT-TGAACATTCCATGCTCGGGAA
*
15458472 ATCGCATCACTTT-TTCTAAAAA
194 ATCGCATCA-TTTGGTC-AAAAA
* * * * * *
15458494 GTTAGTCATTTAGCAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGAATTGTTTC
1 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACCTTATTTACGTGAGAATTGTTTC
* * * * *
15458559 TCTCTTGGTTCTTGGAAGAACTTCTGAACTCGTTAAACATTTACGAGTTATTTTATAACTTCTGT
66 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGT
* * ** * * * *
15458624 TCCTGAGAGT-TTTAAGATGATCCATTCCTTTTACCAATTTTTTAGAGATTCCATGATCAGGAAA
131 TCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTGA-ACATTCCATGCTCGGGAAA
*
15458688 TTGCATCATTTGGTCAAAATA
195 TCGCATCATTTGGTCAAAA-A
* * * * ** *
15458709 GTTTATCATTTTGTAAATAACTTTTGGACTTTGAATTAATAA-CTTTTTTACGTGAGAATTCCTC
1 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA-AACCTTATTTACGTGAGAATTGTTT
* * *
15458773 CTCTCTTGGTTCTTAGATGAACTT-TCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCG
65 CTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCG
* * * * *
15458837 GTTCCTGATAGTAGTCAAGACAATCCATTCCTTCGACCAATTTTTTGAACATTCCATGATCGAGA
129 GTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAA-TTTTTGAACATTCCATGCTCGGGA
*
15458902 AATCGCATCATTTGGTCTAAATA
193 AATCGCATCATTTGGTC-AAAAA
*
15458925 GTTTGTCATTTTTTAAACAACTTTT-GTGCTTTGAATTAAATA-CTTATTTACGTGAGAATTGTT
1 GTTTGTCATTTTGTAAACAACTTTTGGT-CTTTGAATTAAA-ACCTTATTTACGTGAGAATTGTT
* * * * * *
15458988 TCCCTCTTGGTTCTTAGACGAACATAC-GAACTAGGT-AAA-ATTTTATGAGTTCTTTTTTAACT
64 TCTCTCTTGGTTCTTGGACGAAC-TTCTGAACT-TGTCAAACA-TTTACGAGTTCTTTTATAACT
* * * * * * *
15459050 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTTGAGCAATTTTTCGAACATTCCTTGCT-T
126 TCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTT-GAACATTCCATGCTCG
* *
15459114 GGAAATTGCATCATTTGGTCTAAATA
190 GGAAATCGCATCATTTGGTC-AAAAA
* * *
15459140 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACCTGAGAATTGTTTC
1 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACCTTATTTACGTGAGAATTGTTTC
* ** * * * *
15459205 TCTCTCGGTTCTTGGAAAAAGTGCTGAACTTGTCAAACATTTACTAGTTC-TTTATAACTTCGAT
66 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGT
* * * * * *
15459269 TCCAGATAGTAGTCAAGATGATCCATTCCTTTGACCAACTTTTCGAACATTCCATGCTCGGGAAA
131 TCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAA-TTTTTGAACATTCCATGCTCGGGAAA
* *
15459334 TTGCATCATTTGGTCCAAAAC
195 TCGCATCATTTGGT-CAAAAA
* *
15459355 GTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTT-TTTGACGTGAGAATTGTTT
1 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACCTTATTT-ACGTGAGAATTGTTT
* * * * * *
15459419 CTCTCTCGGTTCTTGGATGAAGTTCTGAACTTATCAAACATTTACTAGTTCTTTGATAACTTCGG
65 CTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGG
* * * *
15459484 TTACTGATAGTAGTCAAGATGATCCATTCC
130 TTCCTGAGAGTATTCAAGACGATCCATTCC
15459514 CTCTTGGTTC
Statistics
Matches: 1970, Mismatches: 282, Indels: 114
0.83 0.12 0.05
Matches are distributed among these distances:
211 1 0.00
212 145 0.07
213 130 0.07
214 132 0.07
215 829 0.42
216 719 0.36
217 14 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (214 bp):
GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACCTTATTTACGTGAGAATTGTTTC
TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGT
TCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTGAACATTCCATGCTCGGGAAAT
CGCATCATTTGGTCAAAAA
Found at i:15458087 original size:431 final size:430
Alignment explanation
Indices: 15456791--15459513 Score: 2900
Period size: 431 Copynumber: 6.4 Consensus size: 430
15456781 CTCCCATCAA
* * * * * *
15456791 TCATTTTGTAAACAGCTTTTGGTCTTCGATTTACAAACTTTTTTTTACATGAGAATTGTTTCTCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC--TTATTTACGTGAGAATTGTTTCTCT
* * * * * **
15456856 TTTGGTTTTTGGACGAACTT-TCGAACTTGTCAAGCATTTATGAGTTCTGTTATAACTTCGACTC
64 CTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * * ** * *
15456920 CTAAGATTATTCAAGACGATCTATTCGTTCGATAAATTTTCTGAACATTCCATGATTGGG-AA--
128 CTGAGAGTACTCAAGACGATCCATTCCTTTGACCAATTTT-TGAACATTCCATGCTCGGGAAATT
** * *
15456982 --A--A------CTAAATGGTTTGTCATTTTGTAAACAACTTTTGGT-TTTAAAATTAAAAATTA
192 GCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT-GAATTAAAACTT-
* * ** * * * **
15457036 ATTTACGTGAGAATTGTTTCTCTCTTGGTACTTTGACAAACTTTCGGACTTTTCAAACATTTTTG
255 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACG
*
15457101 AGTTCTTTTATAACTTCGGTTACTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
320 AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
* *
15457166 -A-A--CCATCCTC-AAGAAATCGCATCATTTGGTCTAAAAAGTTTG
385 AACATTCCATGCTCGGA-AAATCGCATCATTTGGTCTAAAAAGTTTG
* * * * **
15457208 TTATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTAGTTACGTGAAAATTGTCGCTCTCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * *
15457273 TGGTTCTTGGACGAACTT-TCAAACTTGTCAAACATTTACGAGTTCTTTTATAATTTTGGTTTCT
66 TGGTTCTTGGACGAACTTCT-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCT
* * ** * *
15457337 AAGAGTACTTAAGACGATCCATTCCTTTGACTTATTTTCCT-AACATTTCATGCTCGGGAAATCG
130 GAGAGTACTCAAGACGATCCATTCCTTTGACCAATTTT--TGAACATTCCATGCTCGGGAAATTG
* * * * *
15457401 CATCACTTGGTCTAAAAAGTTAGTCATTTTGTAAATAACTTTTGGTCTTTGATTTAAAAACTTTT
193 CATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAACTTAT
* * * * * * * *
15457466 TTATGAGAGAATTG-TT-TCTCTTGATTCTTTGACGAACTTCCAAACTTGTTAAACATTTATGAG
257 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAG
* * * * *
15457529 TT-TTTTATAACTTCTGTTCCTAAGAGTATTCAAGATGATCCATTCATTTGACCAATTTTTCGAA
322 TTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAA
* * * *
15457593 GATTCCATGATCAGAAAATCGCATCATTTGGTC-AAAATAGTTTA
387 CATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAAA-AGTTTG
* * * * * * *
15457637 TCATTTTGTAAATAACTTTTGGTCTTTCAATGAGAAACCTT-TTTACGAGAGAATTCTTACTCTC
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTA-AAAACTTATTTACGTGAGAATTGTTTCTCTC
** *
15457701 TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTATTAGTTCTTTTATAACTTCGATTCCT
65 TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * * *
15457766 GATAGTACTCAAGATGATCCATTCCTTCGACCAATTTTTGAACATTCCATGATTGGGAAATCGCA
130 GAGAGTACTCAAGACGATCCATTCCTTTGACCAATTTTTGAACATTCCATGCTCGGGAAATTGCA
* * * *
15457831 TTATTTGGTCTAAAAAATTTTTCATTTTGTAAACAACTTTTGGTCATTGAATTAAATACTTATTT
195 TCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA-ACTTATTT
* * * * * *
15457896 ACGTGAGAATTGTTTCCCTCTTGGTTCTTGGATGAACATACGAACTAGTCAAACTTTTACAAGTT
259 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAGTT
* * *
15457961 CTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCAAACA
324 CTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACA
* * * *
15458026 TTCCATCCTCGGAAAATTGCATCAATTGGTGTAAAAAGTTTG
389 TTCCATGCTCGGAAAATCGCATCATTTGGTCTAAAAAGTTTG
* **
15458068 TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTCGCTCTCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * *
15458133 TGGTTCTTGGACGAACTT-TCGAAATTGTCAAACATTTACGAGTTCTTTTATAACTTTGATTTCT
66 TGGTTCTTGGACGAACTTCT-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * ** * *
15458197 GAGAATACTTAAGACGATCCATTCCTTCGACTTATTTTTCGAACATTTCGTGCTCGGGAAATTGC
130 GAGAGTACTCAAGACGATCCATTCCTTTGACCAATTTTT-GAACATTCCATGCTCGGGAAATTGC
* * * *
15458262 ATCACTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAACTTACTT
194 ATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACTTATTT
** *
15458327 ACGTGAGAATTGTCGCTCTCTTAGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAGTT
259 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAGTT
* ** ** *
15458392 CTTTTATAACTTAGGTTTTTGAGAGTACTT-AAGACGATCCATTCCTTCGACTTA-TTTTCAAAA
324 CTTTTATAACTTCGGTTCCTGAGAGTA-TTCAAGACGATCCATTCCTTCGACCAATTTTTC-GAA
* * * *
15458455 CATTTCATGCTCGGGAAATCGCATCACTTT-TTCTAAAAAGTTAG
387 CATTCCATGCTCGGAAAATCGCATCA-TTTGGTCTAAAAAGTTTG
* * * *
15458499 TCATTTAGCAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCTCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * *
15458564 TGGTTCTTGGAAGAACTTCTGAACTCGTTAAACATTTACGAGTTATTTTATAACTTCTGTTCCTG
66 TGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTG
* * * * * * * *
15458629 AGAGT-TTTAAGATGATCCATTCCTTTTACCAATTTTTTAGAGATTCCATGATCAGGAAATTGCA
131 AGAGTACTCAAGACGATCCATTCCTTTGACCAATTTTTGA-ACATTCCATGCTCGGGAAATTGCA
* * * *
15458693 TCATTTGGTC-AAAATAGTTTATCATTTTGTAAATAACTTTTGGACTTTGAATTAATAACTTTTT
195 TCATTTGGTCTAAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA-AACTTATT
** * * * *
15458757 TACGTGAGAATTCCTCCTCTCTTGGTTCTTAGATGAACTTTCGAACTTGTCAAACATTTACTAGT
258 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAGT
* * * *
15458822 TCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACAATCCATTCCTTCGACCAATTTTTTGAAC
323 TCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAAC
* *
15458887 ATTCCATGATC-GAGAAATCGCATCATTTGGTCTAAATAGTTTG
388 ATTCCATGCTCGGA-AAATCGCATCATTTGGTCTAAAAAGTTTG
* * *
15458930 TCATTTTTTAAACAACTTTT-GTGCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCCCTC
1 TCATTTTGTAAACAACTTTTGGT-CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * *
15458994 TTGGTTCTTAGACGAACATAC-GAACTAGGT-AAA-ATTTTATGAGTTCTTTTTTAACTTCGGTT
65 TTGGTTCTTGGACGAAC-TTCTGAACT-TGTCAAACA-TTTACGAGTTCTTTTATAACTTCGGTT
* * * * * * *
15459056 CCTTAAAGTATTCAAGACGATCCATTCATTTGAGCAATTTTTCGAACATTCCTTGCT-TGGAAAT
127 CCTGAGAGTACTCAAGACGATCCATTCCTTTGACCAATTTTT-GAACATTCCATGCTCGGGAAAT
*
15459120 TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
191 TGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAACTT
* * * ** * * * *
15459185 TTTTACCTGAGAATTGTTTCTCTCTCGGTTCTTGGAAAAAGTGCTGAACTTGTCAAACATTTACT
255 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACG
* * * * * * *
15459250 AGTTC-TTTATAACTTCGATTCCAGATAGTAGTCAAGATGATCCATTCCTTTGACCAACTTTTCG
320 AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
* * * *
15459314 AACATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAAACGTTTG
385 AACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAAAAGTTTG
*
15459360 TCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTT-TTTGACGTGAGAATTGTTTCTCTC
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT-ACGTGAGAATTGTTTCTCTC
* * * * * * *
15459424 TCGGTTCTTGGATGAAGTTCTGAACTTATCAAACATTTACTAGTTCTTTGATAACTTCGGTTACT
65 TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCT
* * *
15459489 GATAGTAGTCAAGATGATCCATTCC
130 GAGAGTACTCAAGACGATCCATTCC
15459514 CTCTTGGTTC
Statistics
Matches: 1923, Mismatches: 325, Indels: 103
0.82 0.14 0.04
Matches are distributed among these distances:
415 117 0.06
416 4 0.00
417 32 0.02
420 1 0.00
422 1 0.00
425 54 0.03
426 41 0.02
427 7 0.00
428 135 0.07
429 183 0.10
430 363 0.19
431 856 0.45
432 128 0.07
433 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (430 bp):
TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
TGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTG
AGAGTACTCAAGACGATCCATTCCTTTGACCAATTTTTGAACATTCCATGCTCGGGAAATTGCAT
CATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACTTATTTAC
GTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAGTTCT
TTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATT
CCATGCTCGGAAAATCGCATCATTTGGTCTAAAAAGTTTG
Found at i:15458691 original size:646 final size:644
Alignment explanation
Indices: 15456791--15459513 Score: 2931
Period size: 646 Copynumber: 4.2 Consensus size: 644
15456781 CTCCCATCAA
* * * * * * *
15456791 TCATTTTGTAAACAGCTTTTGGTCTTCGATTTACAAACTTTTTTTTACATGAGAATTGTTTCTCT
1 TCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAAC--TTTTTTACGTGAGAATTG-TCCTCT
* * * * * * * *
15456856 TTTGGTTTTTGGACGAACTTTCGAACTTGTCAAGCATTTATGAGTTCTGTTATAACTTCGACTCC
63 CTTGGTTCTTGGACGAACTTTCGAAATTGTCAAACATTTACGAGTTCTTTTATAACTTTG-TTCC
* * * * * * *
15456921 TAAGATTATTCAAGACGATCTATTCGTTCGA-TAAATTTTCTGAACATTCCATGATTGGG-AA--
127 TGAGAGTATT-AAGACGATCCATTCCTTCGACCAATTTTTC-GAACATTCCATGATCGGGAAATC
* * *
15456982 --A--A------CTAAATGGTTTGTCATTTTGTAAACAACTTTTGGT-TTTAAAATTAAAAATTA
190 GCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTT-GAATTAAAACTT-
* * * * * * *
15457036 ATTTACGTGAGAATTGTTTCTCTCTTGGTACTTTGACAAACTTTCGGACTTTTCAAACATTTTTG
253 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTATG
*
15457101 AGTTCTTTTATAACTTCGGTTACTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
318 AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
* ** *
15457166 -A-A--CCATCCTCAAGAAATCGCATCATTTGGTCTAAAAAGTTTGTTATTTTGTAAACAACTTT
383 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTT
* * * ** *
15457227 TTGTCTTTGAATTAAAAACTTAGTTACGTGAAAATTGTCGCTCTCTTGGTTCTTGGACGAACTT-
448 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTC
* * * * * * *
15457291 TCAAACTTGTCAAACATTTACGAGTTCTTTTATAATTTTGGTTTCTAAGAGTACTT-AAGACGAT
513 T-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTA-TTCAAGATGAT
** * * * * *
15457355 CCATTCCTTTGACTTATTTTCCTA-ACATTTCATGCTCGGGAAATCGCATCACTTGGTCTAAAAA
576 CCATTCCTTTGACCAATTTT-TTAGACATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAAAA
*
15457419 GTTAG
640 GTTTG
* * * *
15457424 TCATTTTGTAAATAACTTTTGGTCTTTGATTTAAAAACTTTTTTATGAGAGAATTGT-TTCTCTT
1 TCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTCCTCTCTT
* * * * * *
15457488 GATTCTTTGACGAAC-TTCCAAACTTGTTAAACATTTATGAGTT-TTTTATAACTTCTGTTCCTA
66 GGTTCTTGGACGAACTTTCGAAA-TTGTCAAACATTTACGAGTTCTTTTATAACTT-TGTTCCTG
* * * * * *
15457551 AGAGTATTCAAGATGATCCATTCATTTGACCAATTTTTCGAAGATTCCATGATCAGAAAATCGCA
129 AGAGTATT-AAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCA
* * * * *
15457616 TCATTTGGTC-AAAATAGTTTATCATTTTGTAAATAACTTTTGGTCTTTCAATGAGAAACCTT-T
193 TCATTTGGTCTAAAA-GGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA-AAA-CTTAT
* * * * *
15457679 TTACGAGAGAATTCTTACTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACATTTATTAG
255 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTATGAG
* * * *
15457744 TTCTTTTATAACTTCGATTCCTGATAGTACTCAAGATGATCCATTCCTTCGACCAATTTTT-GAA
320 TTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAA
* * * * *
15457808 CATTCCATGATTGGGAAATCGCATTATTTGGTCTAAAAAATTTTTCATTTTGTAAACAACTTTTG
385 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTG
* * * * *
15457873 GTCATTGAATTAAATACTTATTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGATGAACATAC-
450 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAAC-TTCT
* * *
15457937 GAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCA
514 GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCA
* * * * * * **
15458002 TTCCTTCGACCAATTTTTCAAACATTCCATCCTCGGAAAATTGCATCAATTGGTGTAAAAAGTTT
579 TTCCTTTGACCAATTTTTTAGACATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAAAAGTTT
15458067 G
644 G
* * *
15458068 TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTCGCTCTCT
1 TCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTC-CTCTCT
*
15458133 TGGTTCTTGGACGAACTTTCGAAATTGTCAAACATTTACGAGTTCTTTTATAACTTTGATTTCTG
65 TGGTTCTTGGACGAACTTTCGAAATTGTCAAACATTTACGAGTTCTTTTATAACTTTG-TTCCTG
* ** * * * *
15458198 AGAATACTTAAGACGATCCATTCCTTCGACTTATTTTTCGAACATTTCGTGCTCGGGAAATTGCA
129 AGAGTA-TTAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCA
* * *
15458263 TCACTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAACTTACTTA
193 TCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACTTATTTA
** * * *
15458328 CGTGAGAATTGTCGCTCTCTTAGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAGTTC
258 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTATGAGTTC
* ** ** *
15458393 TTTTATAACTTAGGTTTTTGAGAGTACTT-AAGACGATCCATTCCTTCGACTTA-TTTTCAAAAC
323 TTTTATAACTTCGGTTCCTGAGAGTA-TTCAAGACGATCCATTCCTTCGACCAATTTTTC-GAAC
* * * * *
15458456 ATTTCATGCTCGGGAAATCGCATCACTTT-TTCTAAAAAGTTAGTCATTTAGCAAACAACTTTTG
386 ATTCCATGCTCGGGAAATCGCATCA-TTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTG
* *
15458520 GTCTTTGAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCTG
450 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCTG
* * * *
15458585 AACTCGTTAAACATTTACGAGTTATTTTATAACTTCTG-TTCCTGAGAGT-TTTAAGATGATCCA
515 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTC-GATTCCTGAGAGTATTCAAGATGATCCA
* * * *
15458648 TTCCTTTTACCAATTTTTTAGAGATTCCATGATCAGGAAATTGCATCATTTGGT-CAAAATAGTT
579 TTCCTTTGACCAATTTTTTAGACATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAAA-AGTT
*
15458712 TA
643 TG
* * *
15458714 TCATTTTGTAAATAACTTTTGGACTTTGAATTAATAACTTTTTTACGTGAGAATTCCTCCTCTCT
1 TCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATT-GTCCTCTCT
* * * * *
15458779 TGGTTCTTAGATGAACTTTCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTG
65 TGGTTCTTGGACGAACTTTCGAAATTGTCAAACATTTACGAGTTCTTTTATAACTT-TGTTCCTG
* * * * *
15458844 ATAGTAGTCAAGACAATCCATTCCTTCGACCAATTTTTTGAACATTCCATGATCGAGAAATCGCA
129 AGAGTA-TTAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCA
*
15458909 TCATTTGGTCTAAATA-GTTTGTCATTTTTTAAACAACTTTT-GTGCTTTGAATTAAATACTTAT
193 TCATTTGGTCTAAA-AGGTTTGTCATTTTGTAAACAACTTTTGGT-CTTTGAATTAAA-ACTTAT
* * * * *
15458972 TTACGTGAGAATTGTTTCCCTCTTGGTTCTTAGACGAACATACGAACTAGGT-AAA-ATTTTATG
255 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT-TGTCAAACA-TTTATG
* * * * * *
15459035 AGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTTGAGCAATTTTTCG
318 AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
* * * *
15459100 AACATTCCTTGCT-TGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
383 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTT
* * * * * *
15459164 TGGTCTTTGAATTAAAAACTTTTTTACCTGAGAATTGTTTCTCTCTCGGTTCTTGGAAAAAGTGC
448 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTC
* * * *
15459229 TGAACTTGTCAAACATTTACTAGTTC-TTTATAACTTCGATTCCAGATAGTAGTCAAGATGATCC
513 TGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCC
* * *
15459293 ATTCCTTTGACCAA-CTTTTCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAAACGT
578 ATTCCTTTGACCAATTTTTTAG-ACATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAAAAGT
15459357 TTG
642 TTG
* * *
15459360 TCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTTTTGACGTGAGAATTGTTTCTCTCT
1 TCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTG-TCCTCTCT
* * * * * * * * *
15459425 CGGTTCTTGGATGAA-GTTCTGAACTTATCAAACATTTACTAGTTCTTTGATAACTTCGGTTACT
65 TGGTTCTTGGACGAACTTTC-GAAATTGTCAAACATTTACGAGTTCTTTTATAACTT-TGTTCCT
* * *
15459489 GATAGTAGTCAAGATGATCCATTCC
128 GAGAGTA-TTAAGACGATCCATTCC
15459514 CTCTTGGTTC
Statistics
Matches: 1752, Mismatches: 279, Indels: 105
0.82 0.13 0.05
Matches are distributed among these distances:
628 58 0.03
629 45 0.03
630 1 0.00
631 15 0.01
633 35 0.02
635 1 0.00
640 4 0.00
641 142 0.08
642 7 0.00
643 5 0.00
644 259 0.15
645 45 0.03
646 738 0.42
647 380 0.22
648 17 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (644 bp):
TCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTCCTCTCTT
GGTTCTTGGACGAACTTTCGAAATTGTCAAACATTTACGAGTTCTTTTATAACTTTGTTCCTGAG
AGTATTAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCA
TTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACTTATTTACGT
GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTATGAGTTCTTT
TATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCC
ATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCTGAACTTG
TCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTT
GACCAATTTTTTAGACATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAAAAGTTTG
Found at i:15459769 original size:308 final size:307
Alignment explanation
Indices: 15459231--15459803 Score: 751
Period size: 308 Copynumber: 1.9 Consensus size: 307
15459221 AAAAGTGCTG
* * *
15459231 AACTTGTCAAACATTTACTAGTTCTTTATAACTTCGATTCCAGATAGTAGTCAAGATGATCCATT
1 AACTAGTCAAACATTTACAAGTTCTTTATAACTTCGATTCCAGAAAGTAGTCAAGATGATCCATT
* * * *
15459296 CCTTTGACCAACTTTTCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAAACGTTTGT
66 CCTTTAACCAACTTTTCGAACATTCAATGCTCGAGAAATAGCATCATTTGGTCCAAAACGTTTGT
*
15459361 CATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTTTTGACGTGAGAATTGTTTCTCTCTC
131 CATTTTGTAAAAAAC-TTTGGTCTTTGAATTAAAAACTTTTTGACGTGAGAATTGTTTCTCTATC
* ** * ** * *
15459426 GGTTCTTGGATGAAGTTCTGAACTTATCAAACATTTACTAGTTCTTTGATAACTTCGGTTACTGA
195 GGTTATTGGACAAACTTCCAAACTCATCAAACATTTACGAGTTCTTTGATAACTTCGGTTACTGA
*
15459491 TAGTAGTCAAGATGATCCATTCCCTCTTGGTTCTTGGACAAACATTCA
260 GAGTAGTCAAGATGATCCATTCCCTCTTGGTTCTTGGACAAACATTCA
* ** *
15459539 AACTAGTCAAA-ATTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACT-ATCC
1 AACTAGTCAAACA-TTTACAAGTTC-TTTATAACTTCGATTCCAGAAAGTAGTCAAGA-TGATCC
* * * * * * *
15459602 ATTCGTTTAAGCTATTTTTTGATCATTCAATGCT-GAGAAATAGCATCATTTGGTCTAAATA-GT
63 ATTCCTTTAACCAACTTTTCGAACATTCAATGCTCGAGAAATAGCATCATTTGGTCCAAA-ACGT
*
15459665 TTGTCATTTTGTAAACAATAC-TTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCT
127 TTGTCATTTTGTAAA-AA-ACTTTGGTCTTTGAATTAAAAACTTTTTGACGTGAGAATTGTTTCT
* * *
15459729 CTATTGGTTATTGGACAAACTTCCAAACTCGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT
190 CTATCGGTTATTGGACAAACTTCCAAACTCATCAAACATTTACGAGTTCTTTGATAACTTCGGTT
*
15459794 CCTGAGAGTA
255 ACTGAGAGTA
15459804 TTAAAGACAA
Statistics
Matches: 226, Mismatches: 33, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
307 1 0.00
308 162 0.72
309 60 0.27
310 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (307 bp):
AACTAGTCAAACATTTACAAGTTCTTTATAACTTCGATTCCAGAAAGTAGTCAAGATGATCCATT
CCTTTAACCAACTTTTCGAACATTCAATGCTCGAGAAATAGCATCATTTGGTCCAAAACGTTTGT
CATTTTGTAAAAAACTTTGGTCTTTGAATTAAAAACTTTTTGACGTGAGAATTGTTTCTCTATCG
GTTATTGGACAAACTTCCAAACTCATCAAACATTTACGAGTTCTTTGATAACTTCGGTTACTGAG
AGTAGTCAAGATGATCCATTCCCTCTTGGTTCTTGGACAAACATTCA
Found at i:15459897 original size:216 final size:216
Alignment explanation
Indices: 15459510--15460793 Score: 1462
Period size: 216 Copynumber: 6.0 Consensus size: 216
15459500 AGATGATCCA
*
15459510 TTCCCTCTTGGTTCTTGGACAAACATTCAAACTAGTCAAA-ATTTTACAAGTTCTTTTATAACTT
1 TTCCCTCTTGGTTCTTGGACAAACATCCAAACTAGTCAAACA-TTTACAAGTTCTTTTATAACTT
* * * ** * * * * * * *
15459574 CGGTTCCTTAAAGTATTCAAGACTATCCATTCGTTTAAGCTATTTTTTGATCATTCAATG-CTGA
65 CGGTTCCTGAAAGTATTCAAGACAATCCATTCCTTCGACCAATTTTTCGAACATTCCATGACCGG
*
15459638 GAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATACTTGGTCTTTGAATTAAA
130 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATACTTGGTCTTTGAATTAAA
15459703 AACTTTTTTACGTGAGAATTGT
195 AACTTTTTTACGTGAGAATTGT
* * * * * *
15459725 TTCTCTATTGGTTATTGGACAAACTTCCAAACTCGTCAAACATTTACGAGTTCTTTTATAACTTC
1 TTCCCTCTTGGTTCTTGGACAAACATCCAAACTAGTCAAACATTTACAAGTTCTTTTATAACTTC
* * * * * *
15459790 GGTTCCTGAGAGTATTAAAGACAATCCTTTCCTTCAACCAATTTTTCGAAAATTCCATGCCCGGG
66 GGTTCCTGAAAGTATTCAAGACAATCCATTCCTTCGACCAATTTTTCGAACATTCCATGACCGGG
* *
15459855 AAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACT-TTTGGTCTTTGAATTAAA
131 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TACTTGGTCTTTGAATTAAA
* * *
15459919 TACTTATTTACGTGAGAATGGT
195 AACTTTTTTACGTGAGAATTGT
* * *
15459941 TTCCCTCTTGGTTCTTGGACAAACATACGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTC
1 TTCCCTCTTGGTTCTTGGACAAACATCCAAACTAGTCAAACATTTACAAGTTCTTTTATAACTTC
* * * * * *
15460006 GGTTCCTGATAGTAGTCAAGACAATCCATTCTTTCGACCAATTTTTCGAACATTCTATGATCGAG
66 GGTTCCTGAAAGTATTCAAGACAATCCATTCCTTCGACCAATTTTTCGAACATTCCATGACCGGG
* * * * *
15460071 AAATCGCATCATTTGGTCAAAATTGTTTGTCATTTTGTAAAC-A-ACTTTTGTGCTTCGAACTAA
131 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATAC-TTGGT-CTTTGAATTAA
* * *
15460134 ATACTTTTTTACGTGTGGATTGT
194 AAACTTTTTTACGTGAGAATTGT
* * * * * * *
15460157 TTCCCTCTTGGTTCTTGGACGAACTTCTAAACTTGTTAAATATTTATAAGTTCTTTTATAACTTC
1 TTCCCTCTTGGTTCTTGGACAAACATCCAAACTAGTCAAACATTTACAAGTTCTTTTATAACTTC
** * * *
15460222 GGTTCCT-AAGAGTATTCAAGATGATCCATTCCTTTGACCAATTTTTCGAAGATTCCATGATCGG
66 GGTTCCTGAA-AGTATTCAAGACAATCCATTCCTTCGACCAATTTTTCGAACATTCCATGACCGG
* * * * *
15460286 GAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACT-TTTGGTTTTTGAATTAA
130 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TACTTGGTCTTTGAATTAA
* *
15460350 AAACTTTTTTACGTTAGAATTCT
194 AAACTTTTTTACGTGAGAATTGT
* * *** * *
15460373 TTCTCTGTTGGTTCTTGGACGAAA-ATCTGGACTTGTCAAACATTTACTAGTTCTTTTATAACTT
1 TTCCCTCTTGGTTCTTGGAC-AAACATCCAAACTAGTCAAACATTTACAAGTTCTTTTATAACTT
* * ** * **
15460437 CGGTTCCTGATAGTAGTCAAGATGATCTATTCCTTCGACCAATTTTTCGAACATTCCATGATTGG
65 CGGTTCCTGAAAGTATTCAAGACAATCCATTCCTTCGACCAATTTTTCGAACATTCCATGACCGG
* * *
15460502 GAAATGGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC-A-ACTTTTGTGCTTTAAATTA
130 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATAC-TTGGT-CTTTGAATTA
*
15460565 AACACTTTTTTACGTGAGAATTGT
193 AAAACTTTTTTACGTGAGAATTGT
* * *
15460589 TTCCCTCTTGGTTCTTGGACGAACATACAAACTAGT-AAAAATTTTACAAGTTCTTTTATAACTT
1 TTCCCTCTTGGTTCTTGGACAAACATCCAAACTAGTCAAACA-TTTACAAGTTCTTTTATAACTT
* * * * * * *
15460653 CGGTTCCTTAAAGTATTCAAGA-AGATCCATTCCTTTGAGCAATTTTCCGATCATTCAATG-CTG
65 CGGTTCCTGAAAGTATTCAAGACA-ATCCATTCCTTCGACCAATTTTTCGAACATTCCATGACCG
* * * * *
15460716 AGG-TATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACATTTGGCCTTTGAATTT
129 -GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATACTTGGTCTTTGAATTA
15460780 AAAACTTTTTTACG
193 AAAACTTTTTTACG
15460794 AGTAAGATTG
Statistics
Matches: 902, Mismatches: 146, Indels: 42
0.83 0.13 0.04
Matches are distributed among these distances:
215 181 0.20
216 711 0.79
217 10 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
TTCCCTCTTGGTTCTTGGACAAACATCCAAACTAGTCAAACATTTACAAGTTCTTTTATAACTTC
GGTTCCTGAAAGTATTCAAGACAATCCATTCCTTCGACCAATTTTTCGAACATTCCATGACCGGG
AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATACTTGGTCTTTGAATTAAAA
ACTTTTTTACGTGAGAATTGT
Found at i:15460060 original size:523 final size:522
Alignment explanation
Indices: 15459004--15460044 Score: 1389
Period size: 523 Copynumber: 2.0 Consensus size: 522
15458994 TTGGTTCTTA
* * ** *
15459004 GACGAACATACGAACTAGGTAAAATTTTATGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTC
1 GACGAACATTCAAACTAGGTAAAATTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* ** *
15459069 AAGACGATCCATTCATTTGAGCAATTTTTCGAACATTCCTTGCTTGGAAATTGCATCATTTGGTC
66 AAGACGATCCATTCATTTAAGCAATTTTTCGAACATTCAATGCTTGGAAATAGCATCATTTGGTC
*
15459134 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACCTGAGAAT
131 TAAATAGTTTGTCATTTTGTAAACAACTCTTGGTCTTTGAATTAAAAACTTTTTTACCTGAGAAT
* * * ** * *
15459199 TGTTTCTCTCTCGGTTCTTGGAAAAAGTGCTGAACTTGTCAAACATTTACTAGTTCTTTATAACT
196 TGTTTCTCTATCGGTTATTGGAAAAACTGCCAAACTCGTCAAACATTTACGAGTTCTTTATAACT
* * ** ** * *
15459264 TCGATTCCAGATAGTAGTCAAGATGATCCATTCCTTTGACCAACTTTTCGAACATTCCATGCTCG
261 TCGATTCCAGAGAGTAGTAAAGACAATCCATTCCTTCAACCAACTTTTCGAAAATTCCATGCCCG
* *
15459329 GGAAATTGCATCATTTGGTCCAAAACGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAA
326 GGAAATCGCATCATTTGATCCAAAACGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAA
* * ** * *
15459394 AAACTTTTTGACGTGAGAATTGTTTCTCTCTCGGTTCTTGGATGAAGTTCTGAACTTATCAAACA
391 AAACTTTTTGACGTGAGAATGGTTTCCCTCTCGGTTCTTGGACAAAATACTGAACTTATCAAACA
* ** * **
15459459 TTTACTAGTTCTTTGATAACTTCGGTTACTGATAGTAGTCAAGATGATCCATTCCCTCTTGGTTC
456 TTTACAAGTTCTTTGATAACTTCGGTTACTGATAGTAGTCAAGACAATCCATT-CCTCTTCGACC
15459524 TTG
520 TTG
*
15459527 GACAAACATTCAAACTA-GTCAAAATTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
1 GACGAACATTCAAACTAGGT-AAAATTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * *
15459591 CAAGACTATCCATTCGTTTAAGCTATTTTTTGATCATTCAATGC-TGAGAAATAGCATCATTTGG
65 CAAGACGATCCATTCATTTAAGCAATTTTTCGAACATTCAATGCTTG-GAAATAGCATCATTTGG
*
15459655 TCTAAATAGTTTGTCATTTTGTAAACAA-TACTTGGTCTTTGAATTAAAAACTTTTTTACGTGAG
129 TCTAAATAGTTTGTCATTTTGTAAACAACT-CTTGGTCTTTGAATTAAAAACTTTTTTACCTGAG
* * *
15459719 AATTGTTTCTCTATTGGTTATTGGACAAACTTCCAAACTCGTCAAACATTTACGAGTTCTTTTAT
193 AATTGTTTCTCTATCGGTTATTGGAAAAACTGCCAAACTCGTCAAACATTTACGAGTTC-TTTAT
* * * * *
15459784 AACTTCGGTTCCTGAGAGTATTAAAGACAATCCTTTCCTTCAACCAATTTTTCGAAAATTCCATG
257 AACTTCGATTCCAGAGAGTAGTAAAGACAATCCATTCCTTCAACCAACTTTTCGAAAATTCCATG
* *
15459849 CCCGGGAAATCGCATCATTTGATCTAAATA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
322 CCCGGGAAATCGCATCATTTGATCCAAA-ACGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGA
* *
15459913 ATTAAATACTTATTT-ACGTGAGAATGGTTTCCCTCTTGGTTCTTGGACAAACATAC-GAAC-TA
386 ATTAAAAACTT-TTTGACGTGAGAATGGTTTCCCTCTCGGTTCTTGGACAAA-ATACTGAACTTA
* * *
15459975 GTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACAATCCATT-CT-
449 -TCAAACATTTACAAGTTCTTTGATAACTTCGGTTACTGATAGTAGTCAAGACAATCCATTCCTC
15460038 TTCGACC
513 TTCGACC
15460045 AATTTTTCGA
Statistics
Matches: 449, Mismatches: 61, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
521 4 0.01
522 7 0.02
523 218 0.49
524 214 0.48
525 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (522 bp):
GACGAACATTCAAACTAGGTAAAATTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
AAGACGATCCATTCATTTAAGCAATTTTTCGAACATTCAATGCTTGGAAATAGCATCATTTGGTC
TAAATAGTTTGTCATTTTGTAAACAACTCTTGGTCTTTGAATTAAAAACTTTTTTACCTGAGAAT
TGTTTCTCTATCGGTTATTGGAAAAACTGCCAAACTCGTCAAACATTTACGAGTTCTTTATAACT
TCGATTCCAGAGAGTAGTAAAGACAATCCATTCCTTCAACCAACTTTTCGAAAATTCCATGCCCG
GGAAATCGCATCATTTGATCCAAAACGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAA
AAACTTTTTGACGTGAGAATGGTTTCCCTCTCGGTTCTTGGACAAAATACTGAACTTATCAAACA
TTTACAAGTTCTTTGATAACTTCGGTTACTGATAGTAGTCAAGACAATCCATTCCTCTTCGACCT
TG
Found at i:15460312 original size:432 final size:428
Alignment explanation
Indices: 15459510--15460793 Score: 1659
Period size: 432 Copynumber: 3.0 Consensus size: 428
15459500 AGATGATCCA
* *
15459510 TTCCCTCTTGGTTCTTGGACAAACATTCAAACTAGTCAAAATTTTACAAGTTCTTTTATAACTTC
1 TTCCCTCTTGGTTCTTGGACAAACA-TCGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTC
* * * * * * * * * *
15459575 GGTTCCTTAAAGTATTCAAGACTATCCATTCGTTT-AAGCTATTTTTTGATCATTCAATGCTGAG
65 GGTTCCTGATAGTAGTCAAGACAATCCATTC-TTTCGACCAATTTTTCGAACATTCAATGATGAG
*
15459639 AAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TACTTG-GTCTTTGAATTAA
129 AAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT-TTTGTG-CTTTGAATTAA
* * * * * * *
15459702 AAACTTTTTTACGTGAGAATTGTTTCTCTATTGGTTATTGGACAAACTTCCAAACTCGTCAAACA
192 AAACTTTTTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGACGAACTT-CAAACTAGTTAAAAA
* * * * **
15459767 TTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTAAAGACA-ATCCTTTCCTTCAACCAA
256 TTTACAAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGA-AGATCCATTCCTTTGACCAA
* *
15459831 TTTTTCGAAAATTCCATGCCCGGGAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAA
320 TTTTTCGAAAATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
15459896 CAACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATGGT
385 CAACTTTTGGTCTTTGAATTAAA-ACTTTTTTACGTGAGAATGCT
15459941 TTCCCTCTTGGTTCTTGGACAAACATACGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTC
1 TTCCCTCTTGGTTCTTGGACAAACAT-CGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTC
*
15460006 GGTTCCTGATAGTAGTCAAGACAATCCATTCTTTCGACCAATTTTTCGAACATTCTATGATCGAG
65 GGTTCCTGATAGTAGTCAAGACAATCCATTCTTTCGACCAATTTTTCGAACATTCAATGAT-GAG
* * * * * *
15460071 AAATCGCATCATTTGGTCAAAATTGTTTGTCATTTTGTAAACAACTTTTGTGCTTCGAACTAAAT
129 AAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGTGCTTTGAATTAAAA
* * * *
15460136 ACTTTTTTACGTGTGGATTGTTTCCCTCTTGGTTCTTGGACGAACTTCTAAACTTGTTAAATATT
194 ACTTTTTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGACGAACTTC-AAACTAGTTAAAAATT
* *
15460201 TATAAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGATGATCCATTCCTTTGACCAATTT
258 TACAAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGAAGATCCATTCCTTTGACCAATTT
* * * * *
15460266 TTCGAAGATTCCATGATCGGGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAA
323 TTCGAAAATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * *
15460331 CTTTTGGTTTTTGAATTAAAAACTTTTTTACGTTAGAATTCT
388 CTTTTGGTCTTTGAATT-AAAACTTTTTTACGTGAGAATGCT
* * * * * *
15460373 TTCTCTGTTGGTTCTTGGACGAAA-ATCTGGACTTGTCAAACATTTACTAGTTCTTTTATAACTT
1 TTCCCTCTTGGTTCTTGGAC-AAACATC-GAACTAGTCAAACTTTTACAAGTTCTTTTATAACTT
** * * * *
15460437 CGGTTCCTGATAGTAGTCAAGATGATCTATTCCTTCGACCAATTTTTCGAACATTCCATGATTGG
64 CGGTTCCTGATAGTAGTCAAGACAATCCATTCTTTCGACCAATTTTTCGAACATTCAATGA-TGA
* *
15460502 GAAATGGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGTGCTTTAAATTAAA
128 GAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGTGCTTTGAATTAAA
* *
15460567 CACTTTTTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGACGAACATACAAACTAG-TAAAAAT
193 AACTTTTTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGACGAAC-TTCAAACTAGTTAAAAA-
*
15460631 TTTACAAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGAAGATCCATTCCTTTGAGCAA
256 TTTACAAGTTCTTTTATAACTTCGGTTCC-TAAGAGTATTCAAGAAGATCCATTCCTTTGACCAA
* ** * *
15460695 TTTTCCGATCATTCAATGCT-GAGG-TATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
320 TTTTTCGAAAATTCCATGCTCG-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
15460758 ACAACATTTGGCCTTTGAATTTAAAACTTTTTTACG
384 ACAACTTTTGGTCTTTGAA-TTAAAACTTTTTTACG
15460794 AGTAAGATTG
Statistics
Matches: 749, Mismatches: 88, Indels: 32
0.86 0.10 0.04
Matches are distributed among these distances:
430 4 0.01
431 180 0.24
432 551 0.74
433 14 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (428 bp):
TTCCCTCTTGGTTCTTGGACAAACATCGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCG
GTTCCTGATAGTAGTCAAGACAATCCATTCTTTCGACCAATTTTTCGAACATTCAATGATGAGAA
ATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGTGCTTTGAATTAAAAAC
TTTTTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGACGAACTTCAAACTAGTTAAAAATTTAC
AAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGAAGATCCATTCCTTTGACCAATTTTTC
GAAAATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
TTGGTCTTTGAATTAAAACTTTTTTACGTGAGAATGCT
Found at i:15462478 original size:16 final size:17
Alignment explanation
Indices: 15462457--15462489 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
15462447 GCTGTATTTT
15462457 TTTCTTT-TTTTTTGAA
1 TTTCTTTATTTTTTGAA
15462473 TTTCTTTCATTTTTTGA
1 TTTCTTT-ATTTTTTGA
15462490 TTTTTTTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.73
Consensus pattern (17 bp):
TTTCTTTATTTTTTGAA
Found at i:15462756 original size:39 final size:39
Alignment explanation
Indices: 15462699--15462777 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
15462689 TAGGATGGAT
*
15462699 ATGTAATGGATAATGAAGGATAGGCTTGAACTCGATTTA
1 ATGTAATGGATAACGAAGGATAGGCTTGAACTCGATTTA
15462738 ATGTAATGGATAACGAAGGATAGGCTTGAACTCGATTTA
1 ATGTAATGGATAACGAAGGATAGGCTTGAACTCGATTTA
15462777 A
1 A
15462778 GGACTCAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (39 bp):
ATGTAATGGATAACGAAGGATAGGCTTGAACTCGATTTA
Found at i:15465646 original size:73 final size:73
Alignment explanation
Indices: 15465556--15465702 Score: 278
Period size: 73 Copynumber: 2.0 Consensus size: 73
15465546 GAGAGAAATA
15465556 TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTTTT-TCACAAATGATTTAAATTCAAGCAAA
1 TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTTTTCTCACAAATGATTTAAATTCAAGCAAA
15465620 GTTTCTTTT
66 GTTT-TTTT
15465629 TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTTTTCTCACAAATGATTTAAATTCAAGCAAA
1 TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTTTTCTCACAAATGATTTAAATTCAAGCAAA
15465694 GTTTTTTT
66 GTTTTTTT
15465702 T
1 T
15465703 AACATAGTGA
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
73 43 0.59
74 30 0.41
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (73 bp):
TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTTTTCTCACAAATGATTTAAATTCAAGCAAA
GTTTTTTT
Found at i:15465716 original size:35 final size:36
Alignment explanation
Indices: 15465556--15465702 Score: 269
Period size: 36 Copynumber: 4.1 Consensus size: 36
15465546 GAGAGAAATA
15465556 TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTT
1 TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTT
15465592 TT-TCACAAATGATTTAAATTCAAGCAAAGTTTCTTTT
1 TTCTCACAAATGATTTAAATTCAAGCAAAG-TT-TTTT
15465629 TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTT
1 TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTT
15465665 TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTT
1 TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTT
15465701 TT
1 TT
15465703 AACATAGTGA
Statistics
Matches: 108, Mismatches: 0, Indels: 6
0.95 0.00 0.05
Matches are distributed among these distances:
35 27 0.25
36 46 0.43
37 8 0.07
38 27 0.25
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (36 bp):
TTCTCACAAATGATTTAAATTCAAGCAAAGTTTTTT
Found at i:15466509 original size:50 final size:52
Alignment explanation
Indices: 15466422--15466519 Score: 137
Period size: 50 Copynumber: 1.9 Consensus size: 52
15466412 TGCATGACTT
*
15466422 GATTTAATGATGCAAACTTTAACTAAAATGGGAGTTACATAATGCATGATAG
1 GATTTAATGATGCAAACTTTAACTAAAATGGAAGTTACATAATGCATGATAG
* * * *
15466474 GATTT-ATGATGCACA-TTTAACTAACATGTAAGTTACTTAATGCATG
1 GATTTAATGATGCAAACTTTAACTAAAATGGAAGTTACATAATGCATG
15466520 TCGTTATTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
50 27 0.66
51 9 0.22
52 5 0.12
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (52 bp):
GATTTAATGATGCAAACTTTAACTAAAATGGAAGTTACATAATGCATGATAG
Found at i:15466529 original size:50 final size:50
Alignment explanation
Indices: 15466404--15466559 Score: 136
Period size: 50 Copynumber: 3.1 Consensus size: 50
15466394 AACTAATGGA
* * * **
15466404 TTACTAAATGCATGAC-TTGATTTAATGATGCAAACTTTAACTAAAATGGGAG
1 TTACTTAATGCATGTCGTT-ATTT-ATGATGCAAA-TTTAACTAACATGAAAG
* * * * *
15466456 TTACATAATGCATGATAG-GATTTATGATGCACATTTAACTAACATGTAAG
1 TTACTTAATGCATG-TCGTTATTTATGATGCAAATTTAACTAACATGAAAG
* * *
15466506 TTACTTAATGCATGTCGTTATTTATGACGCAAACTTAACTGATCATGAAAG
1 TTACTTAATGCATGTCGTTATTTATGATGCAAATTTAACT-AACATGAAAG
15466557 TTA
1 TTA
15466560 ATGGATGGAT
Statistics
Matches: 83, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
49 2 0.02
50 45 0.54
51 20 0.24
52 16 0.19
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (50 bp):
TTACTTAATGCATGTCGTTATTTATGATGCAAATTTAACTAACATGAAAG
Found at i:15466783 original size:17 final size:17
Alignment explanation
Indices: 15466752--15466784 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15466742 CAAACACTTA
15466752 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
15466769 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
15466785 AAGTCCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:15467749 original size:39 final size:39
Alignment explanation
Indices: 15467703--15467801 Score: 144
Period size: 39 Copynumber: 2.5 Consensus size: 39
15467693 TTAAATAGGG
*
15467703 TTTTAATGTGTCTTAGTTTGATACATATTCGATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTCAATAGTTGT
* * *
15467742 TTTTAATGTGTCTTATTTTGATACATATTTAATATTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTCAATAGTTGT
* *
15467781 TTTTAAGGTGTCTAAGTTTGA
1 TTTTAATGTGTCTTAGTTTGA
15467802 GACAAATTAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.24, C:0.06, G:0.16, T:0.54
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACATATTCAATAGTTGT
Found at i:15470123 original size:10 final size:10
Alignment explanation
Indices: 15470108--15470140 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
15470098 TCTAGCCTAG
*
15470108 TCCATTCAGT
1 TCCATTCAGC
15470118 TCCATTCAGC
1 TCCATTCAGC
15470128 TCCATTCAGC
1 TCCATTCAGC
15470138 TCC
1 TCC
15470141 TTACTTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.18, C:0.39, G:0.09, T:0.33
Consensus pattern (10 bp):
TCCATTCAGC
Found at i:15473915 original size:49 final size:49
Alignment explanation
Indices: 15473843--15473942 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
15473833 AAGTTGTCTA
15473843 ATAGTTACGAGTTCTTTTATAACTTCTGTTCCTAAGAGTATTCAAGATG
1 ATAGTTACGAGTTCTTTTATAACTTCTGTTCCTAAGAGTATTCAAGATG
*
15473892 ATAGTTACGAGTTCTTTTATAACTTTTGTTCCTAAGAGTATTCAAGATG
1 ATAGTTACGAGTTCTTTTATAACTTCTGTTCCTAAGAGTATTCAAGATG
15473941 AT
1 AT
15473943 CCATTCCTTC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (49 bp):
ATAGTTACGAGTTCTTTTATAACTTCTGTTCCTAAGAGTATTCAAGATG
Found at i:15480523 original size:15 final size:15
Alignment explanation
Indices: 15480485--15480526 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
15480475 GCTCGCAGGG
*
15480485 TTCATGCTCGCATTA
1 TTCATGCTCGCACTA
*
15480500 TT-AGAGCTCGCACTA
1 TTCA-TGCTCGCACTA
15480515 TTCATGCTCGCA
1 TTCATGCTCGCA
15480527 TAACTTTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 1 0.05
15 20 0.91
16 1 0.05
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (15 bp):
TTCATGCTCGCACTA
Found at i:15481138 original size:215 final size:216
Alignment explanation
Indices: 15480528--15481146 Score: 821
Period size: 216 Copynumber: 2.9 Consensus size: 216
15480518 ATGCTCGCAT
* * * * * * * *
15480528 AACTTTTGGTCTTTGATTTAATAACTTTTTCACATGAGAATTGTTTCTCTCTTGGTTCTTGGACA
1 AACTTTTGGTTTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTCGATTCTTGGACG
* * ** * * * * * *
15480593 AACTTCCGAACTTGTTGAACATTTTCGAGTTCTTTCATAACTTTGGTTTCTGAGAGTATTCAAGA
66 AAGTTTCGAACTTGTCAAACATTTACTAGTTCTTTCATAACTTCGGTTCCTGATAGTAGTCAAGA
* * * * *
15480658 CGATCCATTCTTTCGACCAATTTTTCAAACATTCCATTCTCGGGAAATCGCGTCATTTGGTCTAA
131 CGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTAGCCTAA
15480723 ATAGTTTGTCATTTTGTAAAC
196 ATAGTTTGTCATTTTGTAAAC
* *
15480744 AACTTTTGGTCTTTT-AATTAAAAACGTTTTTACGTGAGAATTGTTTATCTCTCGATTCTTGGAC
1 AACTTTTGGT-TTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTCGATTCTTGGAC
* * * *
15480808 GAAGTGTCAAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTAAAG
65 GAAGTTTCGAACTTGTCAAACATTTACTAGTTCTTTCATAACTTCGGTTCCTGATAGTAGTCAAG
* **
15480873 ACGATCCATTCCTTTGACCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTAGCCTA
130 ACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTAGCCTA
15480938 AA-ATGTTTGTCATTTTGTAAAC
195 AATA-GTTTGTCATTTTGTAAAC
* * *
15480960 AACTTTTGGTTTTTGAATTAAAAACTTTTTTACGTTAGAATTGTTTCTCTCTCGATTCTAGGATG
1 AACTTTTGGTTTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTCGATTCTTGGACG
* * * *
15481025 AGGTTTTGAACTT-TCAAACATTTACTAGTTCTTTGATAACTTCGGTTCCTAATAGTAGTCAAGA
66 AAGTTTCGAACTTGTCAAACATTTACTAGTTCTTTCATAACTTCGGTTCCTGATAGTAGTCAAGA
* * *
15481089 TGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGATCGAGAAATCGCATCATTT
131 CGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTT
15481147 GGTCAAACTT
Statistics
Matches: 350, Mismatches: 50, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
215 105 0.30
216 242 0.69
217 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.41
Consensus pattern (216 bp):
AACTTTTGGTTTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTCGATTCTTGGACG
AAGTTTCGAACTTGTCAAACATTTACTAGTTCTTTCATAACTTCGGTTCCTGATAGTAGTCAAGA
CGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTAGCCTAA
ATAGTTTGTCATTTTGTAAAC
Found at i:15481257 original size:111 final size:111
Alignment explanation
Indices: 15481038--15481237 Score: 287
Period size: 111 Copynumber: 1.8 Consensus size: 111
15481028 TTTTGAACTT
* *
15481038 TCAAACATTTACTAGTTCTTTGATAACTTCGGTTCCTAATAGTAGTCAAGATGATCCATTCCTTC
1 TCAAACATTTACTAGTTCTTTGATAACTTCGATTCCTAATAGTAGTCAAGACGATCCATTCCTTC
15481103 GACCAATTTTTCAAACATTCCATGATCGAGAAATCGCATCATTTGG
66 GACCAATTTTTCAAACATTCCATGATCGAGAAATCGCATCATTTGG
* * * *
15481149 TCAAACTTTTACTAGTTCTTTTATAACTTCGATTCCTTAA-AGTATTCAAGACGATCCCTTCCTT
1 TCAAACATTTACTAGTTCTTTGATAACTTCGATTCC-TAATAGTAGTCAAGACGATCCATTCCTT
* * *
15481213 C-AGGCATTTTTTCGAACATTCCATG
65 CGA-CCAATTTTTCAAACATTCCATG
15481238 CTTTGGGTAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
110 1 0.01
111 74 0.95
112 3 0.04
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.38
Consensus pattern (111 bp):
TCAAACATTTACTAGTTCTTTGATAACTTCGATTCCTAATAGTAGTCAAGACGATCCATTCCTTC
GACCAATTTTTCAAACATTCCATGATCGAGAAATCGCATCATTTGG
Found at i:15482620 original size:215 final size:215
Alignment explanation
Indices: 15482082--15505751 Score: 27811
Period size: 215 Copynumber: 109.8 Consensus size: 215
15482072 CCAACCATAC
* * *
15482082 TCGGGAAATCGTATCATTTGGACTAAACAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * *
15482147 TAAAAACTTTTTTATGAGAGAACTAC-TTCTCTCTTGGTTCTTGGACGAACTTCCAAATTTGTTA
65 TAAAAACTTTTTTAAGTGAGAA-TTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * **
15482211 AACATTTACTAGTTCTTTTATAACTTCAGTTCTTGAGAGTATTCAAGGCGATCCATTCCTTTAAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
* * *
15482276 CAATTTTTCAAAGATTACATGA
194 CAATTTTTCGAACATTCCATGA
** * * * *
15482298 TCGAAAAATTGCATCATTTGGTCAAAATAATTTGCCATTTTGTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
15482363 TAAAAACTTTTTTACGTGAGAATTCTTTCTTTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
15482428 ACATTTACTAGTTCTTTTATTACGTCGATTCCTGATAGTAGTCAAGACGATCCATTCCTTCGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
*
15482493 AATTTTT-GAACATTCCGTGA
195 AATTTTTCGAACATTCCATGA
* * *
15482513 TCGGGAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
15482578 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAAGTACCAAATTTGTCAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
** *
15482643 ACATTTACTAGTTCTTTTATAACTTCGGTTCCAAATAGTAGTCAAGACGATCCATTCCTTCGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* *
15482708 AATTTTTTGAACATTCCGTGA
195 AATTTTTCGAACATTCCATGA
* *
15482729 TCGGGAAATCGCATCATTTGGTCTAAATAGTTTTGTCATTTTGTAAACAACTTTTGGTTTTTTAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * * * *
15482794 TTAAATACTTTTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTTA
64 TTAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * * *
15482859 AACATTTACGAGTTCTTTAATAACTTCGGTTCCTGAGAATATTCAAGAGGATCCATTCCTTTGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
* * *
15482924 CAATTTTTAGAAGATTCCTTGA
194 CAATTTTTCGAACATTCCATGA
* * * *
15482946 TCAGGAAATCGCATTATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
** *
15483011 TAAAAACTTTTTTACTTTAGAATTCTTTCTCTCCTT-GTTCTTGGACGAACTTCCGAACTTGTCA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCT-CTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * *
15483075 AACATTTACTAGTTCTTCTATAACTTTGGTTCCTGAAAGTAGTCAAGACGATCCATTCCTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15483140 CAATTTTTCAAACATTCCATGA
194 CAATTTTTCGAACATTCCATGA
* * *
15483162 TTGGGAAATCGCATCATTTGGTC-ATAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTAAA
1 TCGGGAAAT-GCATCATTTGGTCTA-AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * * *
15483226 TTAAAAACTTTTTTACA-AGAGAATTGTTTCTCTCTTGGTTCTTAGATGAACTTCCTAACTTGTT
64 TTAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * *
15483290 AAACATTTA-TGAGTTCTTTTATGACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTAG
128 AAACATTTACT-AGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
* *
15483354 ACCAATTTTTTGAAGATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
* * * *
15483378 TTGGGAAATCGCATCATTTGGTCTAAATAGTTTGCCATTTTTTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * *
15483443 TAAAAACTTTTTTACA-TGAGAATTCTTTCTCTCTTAGTTCTTAGACGAAGTACTGAACTTGTCA
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* *
15483507 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTACTCAAGACGATCCATTCCTTCGAG
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15483572 CAATTTTTTGAACATTCCATGA
194 CAATTTTTCGAACATTCCATGA
** * * *
15483594 TCAAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * *
15483659 TAAAAACTTTTTTACGAGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTAGTTAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
15483724 ACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACAATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* * *
15483789 AATTTTTAGAAGATTCCATTA
195 AATTTTTCGAACATTCCATGA
* * * *
15483810 TCGAGAAATCGCATTATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
15483875 TAAAAACTTTTTTACGTTAGAATTCTTTCTCTCCTT-GTTCTTGGATGAACTTCCGAACTTGTAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCT-CTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * * * *
15483939 AACATTTACTAGTTCTTCTATAACTTTGGTTCCTGATAATAGTCAAGATGATGCATTCTTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15484004 CAATTTTTTGAACATTCCATGA
194 CAATTTTTCGAACATTCCATGA
* * * * *
15484026 TCGGGAAATCGTATCATTTGATCTTATATTGTTTGTCATTTTTTAAACAACTTTT-GTGCTTTGA
1 TCGGGAAAT-GCATCATTTGGTC-TAAATAGTTTGTCATTTTGTAAACAACTTTTGGT-CTTTGA
* * * * * * * *
15484090 ACTAAATACTTTTTTACGTGAGAATTGTTTC-CTTCTTGGTTCTTGGACGAACATACAAACTAGT
63 ATTAAAAACTTTTTTAAGTGAGAATTCTTTCTC-TCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * * *
15484154 CAAA-ATTTTACAAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCATTT
127 CAAACA-TTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTC
* *
15484218 GAGCAA-TTTTCTGAA-ATTCCATGC
191 GACCAATTTTTC-GAACATTCCATGA
* * *
15484242 T-GAGG-AATCGCATCATTTGGTCTAAATAGTTTGACATTTTGTAAACGACTTGTGGTCTTTGAA
1 TCG-GGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * * *
15484305 TTAAAAACTTTTTTACGTGAGAATTGTTTCTCTATTAGTTCTTGGATGAACTTCTGAACTTCGTC
64 TTAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT-GTC
* * * * *
15484370 AAACATTTACGAGTTCTTTTATAACTTCGTTTCCTGAGAGTATTAAAGACGATCCATTCTTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
* *
15484435 CCAATTTTTTGAACATTCCATGC
193 CCAATTTTTCGAACATTCCATGA
* * * * * *
15484458 CCGGGAAATCGCTTCATCTGATCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTCGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * * * * * *
15484523 TAAATACTTATTTACGTGAGAGTTGTTTCCCTCTTGGTTCTTCGATGAACATACTAACTTGTCAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * *
15484588 ACTTTTA-TAAGTTCTTTTATAACTTCAGTTCCTGACAGTATTCAAGACAATCCATTCCTTTGAC
130 ACATTTACT-AGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
* * * *
15484652 AAATTTTTTGAAGATTCTATGA
194 CAATTTTTCGAACATTCCATGA
*** * * * * * * *
15484674 TCAAAAAATCGTATCATTTGGTCAAAATAATTTGCCATTTTCTAAATAACTTTTGGTCTTTAAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
15484739 TTAAAACTTTTTTATGTGAGAATTCTTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
15484804 ACATTTACTAGTTCTTTTATTA-TGTCGGTTCCTGATAGTAGTCAAGATGATCCATTCCTTCGAC
130 ACATTTACTAGTTCTTTTATAACT-TCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
* ** *
15484868 TAATTTTTTTAACATTCCATAA
194 CAATTTTTCGAACATTCCATGA
* * * * *
15484890 TTGAGAAATCGTATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * *
15484955 TAAAAACTTTTTTACGAGAGAATTATTTCTCTCTTGGTTCTTAGATGAACTTCCTAACTTGTTAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* *
15485020 ACATTTA-TGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTAGAC
130 ACATTTACT-AGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15485084 CAA-TTTTCTGAAGATTCCATGA
194 CAATTTTTC-GAACATTCCATGA
* * * * * * * *
15485106 ACGGGAAATCGCGA-AATTTGGTCAAAATAGTTTGTTATTTTGTAAATAACATTTGGTGTTTAAA
1 TCGGGAAAT-GC-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * *
15485170 TTAAAAACTTTTTTACGTGAGAATTC--TCTCTCTTGGTTCTTGGACGAAGTTCCAAACTTGTCA
64 TTAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
*
15485233 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
15485298 CAATTTTTCGAACATTCCATGA
194 CAATTTTTCGAACATTCCATGA
* * * * *
15485320 TCGGGAAATCCATCTTTTGGGCTAATTAGTTAGTCATTTTGTAAACAACTTTTGGTCTTTGAAAT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG-AAT
* * * * ** * *
15485385 T----TCTTTTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAATTTGTTAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
15485446 ACATTTACTAGTTCATTTATAACTTTGGTTCCTGAGAGTATTCAA-ACGATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* **
15485510 GATTTTTCGAACATTTGATGA
195 AATTTTTCGAACATTCCATGA
* * *
15485531 TCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * * * *
15485596 TAGAAGCTCTTTTACA-TGAGAACTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTCTCA
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
*
15485660 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15485725 CAATCTTTCGAACATTCCATGA
194 CAATTTTTCGAACATTCCATGA
* * * * *
15485747 TTGAGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15485812 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
15485877 CATTTACTAGCTCTTTTATAACTTCTGTCCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* **
15485942 ATTTTAT-GAAGATTTGAT-A
196 ATTTT-TCGAACATTCCATGA
* * * *
15485961 TCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTTGCAAAATAACTTTTGGTCTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA
** * * ** *
15486026 TTAAAAACTCTTTTGCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTTTGAACTTCTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
15486090 AAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15486155 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
** * * * * * *
15486178 TCATGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTCATTT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15486243 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
15486308 CATTTACTAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15486373 ATTTTCCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
** * * * * *
15486393 TCAAGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTGAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * *
15486458 TTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
15486522 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15486587 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
** * * * * * *
15486610 TCATGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTCATTT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15486675 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
15486740 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * * *
15486805 ATTGTCCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
** * * * * * *
15486825 TCAAGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTTAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * *
15486890 TTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
15486954 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
*
15487019 CCAATTTTTTGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * * *
15487042 TCGGGAAATCCATCTTTTGGGCTAATTAGTTAGTCATTTTGTAAACAACTTTTGGTCTTTGAAAT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG-AAT
* * * * * ** * *
15487107 T----TCTTTTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTTGAATTTGTTAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
15487168 ACATTTACTAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAA-ACGATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* **
15487232 GATTTTTCGAACATTTGATGA
195 AATTTTTCGAACATTCCATGA
* * *
15487253 TCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * * *
15487318 TAGAAGCTCTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTCTCA
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* *
15487382 AACATTTACTAGTTCTTTTATAACTTCGATTCCTGATAGTAGTCAAGACGATCCATTCCTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15487447 CAATCTTTCGAACATTCCATGA
194 CAATTTTTCGAACATTCCATGA
* * * * *
15487469 TTGAGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15487534 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
15487599 CATTTACTAGCTCTTTTATAACTTCTGTTCCTGAGAGTATTCAAGACGATCCATTCTTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* *
15487664 ATTTTAT-GAAGATTCGAT-A
196 ATTTT-TCGAACATTCCATGA
* * * *
15487683 TCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTTGCAAAATAACTTTTGGTCTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA
** * * * *
15487748 TTAAAAACTCTTTTGCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTTCGAACTTCTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
15487812 AAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15487877 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
** * * * * * *
15487900 TCATGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTCATTT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15487965 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
15488030 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGACAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* *
15488095 ATTTTTCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * * * * * *
15488115 TCAAGTAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAA-ATTTGTTTGTTTGAA
1 TC-GGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
* ** * * *
15488179 TTAAAAACTCTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTCA
64 TTAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
*
15488243 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
* *
15488308 CAATTTTTTGAACTTTCCATGA
194 CAATTTTTCGAACATTCCATGA
* * * * *
15488330 TCGAGAAATCCATCTTTTGGTCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
15488395 AAAAACTTTTTT-ACTAGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTTCGAATTTGTTAA
66 AAAAACTTTTTTAAGT-GAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * ** *
15488459 ACATTTACTAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGATTATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* *
15488524 AATTTTTAGAAGATTCCATGA
195 AATTTTTCGAACATTCCATGA
* * *
15488545 TCGGGAAATCTCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * ** *
15488610 TAAAAACTTCTTCACA-TGAGAATTCTTTCTCTCTTGGTTCATT-GATGAGGTTTCGAACTTGTC
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGTC
* * *
15488673 AAACATTTACTAGTTCTTTTATAACTTCGATTCCTGATAGTAGTCAAGACGATCCATTCCTTGGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
*
15488738 CCAATTTTTTGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * *
15488761 TCGGGAAATCCATCTTTTGGTCTAATTAGTTAGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
** * * * * * *
15488826 ---TTCTTTTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
15488888 CATTTACTAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * **
15488953 ATTTTCCGAAGATTTGATGA
196 ATTTTTCGAACATTCCATGA
* * * *
15488973 TCGGGAAATCGCATCATTTGGT-TAAAATATTTTGTCATTTTGCAAATAAATTTTGGTCTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * * *
15489037 TTAAAAGCTCTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTGTC
64 TTAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
15489101 AAACATTTACTAGTTCTTTTATAACTTCGATTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
* *
15489166 CCAATTTTTTGAACATTCCAAGA
193 CCAATTTTTCGAACATTCCATGA
* * *
15489189 TCGGGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * * * *
15489254 AAAAACCTTTTTATGAGAGAGTTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
15489319 CATTTACTAGTTATTTTATAACTTCTGTTCCTGAGAGTATTGAAGACGATCCATTCCTTTGTCCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15489384 ATTTTTTGAAGATTCGAT-A
196 ATTTTTCGAACATTCCATGA
* * * * * * *
15489403 TCGGGAAATCGCATCATTTGTTCAAAATATTTTGCCATTTTGGAAATAAATTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * ** *
15489468 TAAAAGCTCTTTTACA-TGAGAATTCTTCCTCTCTTGGTTCTTGGATGAAGTTCTAAACTTTTCA
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * *
15489532 AACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAAGATGATCCATTCCTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15489597 CAATTTTTCGAACAATCCATGA
194 CAATTTTTCGAACATTCCATGA
** * * * *
15489619 TCATGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * ** ** *
15489684 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTATGAGTTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
15489749 CATTTACTAGTTCTTTTATAACTTCGGTTCCCGAGAGTATTCAAGATGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15489814 ATTTTCCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * * * *
15489834 TCAGGAAATTACATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTGAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * *
15489899 TTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
15489963 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15490028 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * *
15490051 TCGAGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15490116 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGATCTTCCGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
15490181 CATTTACTAGTTCTTTTATAACTTCTGTTCCTAAGAGTATTGAAGATGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* *
15490246 ATTTTTCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * * *
15490266 TCCGGAAATCGCATCATTTGGTCAAAATATTTTGTCAGTTTGCAAAATAACTTTTGGTCTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA
* * * *
15490331 TTAAAAACTCTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCATT-GATGAAGTTTCGAACTTGT
64 TTAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGT
*
15490394 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15490459 ACCAA-TTTTCGAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
* * * *
15490482 TCGAGAAATCCACCTTTTGGTCT-AATCAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
1 TCGGGAAATGCATCATTTGGTCTAAAT-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * ** * *
15490546 TAAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAATTTGTTAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
15490611 ACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* * *
15490676 AATTTTTTGAAGATTCGATGA
195 AATTTTTCGAACATTCCATGA
* * * * *
15490697 TCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCAGTTTGCAAAATAACTTTTGGTCTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA
* * * *
15490762 TTAAAAACTCTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCATT-GATGAAGTTTCGAACTTGT
64 TTAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGT
*
15490825 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15490890 ACCAATTTTTCGAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
* * * *
15490914 TCGAGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * ** * *
15490979 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
15491044 CATTTACTAGTTCTTTTATAACTTCTGTTCCTAAGAGTAGTCAAGACGATCCATTCCTTCGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
*
15491109 ATTTTTCGAACATTCCAAGA
196 ATTTTTCGAACATTCCATGA
* ** * * * *
15491129 GCATGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15491194 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
15491259 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* *
15491324 ATTTTTCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * * * *
15491344 TCAGGAAATTGCATCATTTGGTCAAAATGGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTGAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * * *
15491409 TTAAAAACTCTTTTCCA-TGAGAATTCTCTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
15491473 AAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15491538 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
** * * * * * *
15491561 TCATGAAATCCACCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGACTT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * ** * *
15491626 AAAAACCTTTTTAGGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
15491691 CATTTACTAGTTCTTTTATAACTTCAGTTCCTGAGT-GTATTCAAGATGATCCATTCCTTTGACC
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGA-TAGTATTCAAGACGATCCATTCCTTCGACC
* **
15491755 AA-TTTTCTGAAGATTTGATGA
195 AATTTTTC-GAACATTCCATGA
* * * * *
15491776 TCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTTGCAAAATAACTTTTGGTGTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA
** * *
15491841 TTAAAAACTCTTTTGCA-TGAGAATTCTTTCTCTCTTGGTTCTTGG-CTGAAGTTTCGAACTTGT
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGT
* ** *
15491904 CGAACATTTACTAGTTCTTTTATAACTTCAATTCCTGATAGTAGTCAAGACGATCCATTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15491969 ACCAATTTTTCGAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
** * * * *
15491993 TCATGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * * * *
15492058 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
15492123 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGACAGTATTCAAGATGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15492188 ATTTTCCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * * *
15492208 TCGGAAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAAC-TTTGTTTGTTTGAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * *
15492272 TTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
15492336 AAACATTTACTAGTACTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15492401 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * * *
15492424 TCGAGAAATCCATCTTTTGGTCTAATTAGCTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15492489 AAAAACCTTTTTATGAGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC-ACCTGAATTTGTTAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCC-GAACTTGTCAA
* * * *
15492553 ACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTGAAGACGATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* **
15492618 AATTTTTCGAAGATTTGATGA
195 AATTTTTCGAACATTCCATGA
* * * * * * *
15492639 TCAGCAAATCGCATCATTTGGTCAAAATATTTTGTCATTTTGCAAAATAACTTTTGGTCTTTGTA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA
* * * * * **
15492704 TTAAAAACTCTCTTACA-TGAGGATTCTTTCTCTCTTGGTTCATT-GATGAAGTTTTGAACTTGT
64 TTAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGT
* * *
15492767 CAAACATTTACTACTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGATGATCCATTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15492832 ACCAATTTTTCGAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
* * * *
15492856 TCGAGAAATCCGT-ATTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
1 TCGGGAAATGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * * *
15492920 T-AAAACCTTTTTAGGAGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
15492984 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTGAAGACGATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* * *
15493049 AA-TTTCCGAAGATTCGATGA
195 AATTTTTCGAACATTCCATGA
* * * * * * * * *
15493069 TCAGAAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAATTTTTGTTTGTTTTAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * * *
15493134 TTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGCTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
15493198 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15493263 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * * * *
15493286 TCGAGAAATCCATCTTTTGGTCTAATTAGTTCGTCAATTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
15493351 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
15493416 CATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* *
15493481 ATTTTTCGAAGATTCGAT-A
196 ATTTTTCGAACATTCCATGA
* * * ** * *
15493500 TCGGGAAATCGTATCATTTGGTCAAAATATTTTGTCATCTTTCAAAATAACGTTTGGTCTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAA
* * * * *
15493565 TTAAAATCTCTTTTGCAA--GAGAATTCTTTCTCTCTTGGTTCTTGGAAGAAGTTTCGAACTTGT
64 TTAAAAACT-TTTT-TAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * *
15493628 CGAACATTTACAAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAGGACGATCCACTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15493693 ACCAATTTTTCGAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
* * * * * *
15493717 TCGAGAAATCCATCTTTTGGTCTAATTGGCTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * * * *
15493782 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTAGGACAAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
15493847 CATTTACTAGTTATTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * * *
15493912 ATTTTCCGAAGATTCGATAA
196 ATTTTTCGAACATTCCATGA
* * * * *
15493932 TCAGGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTT-TCAAATAACTTTTGTTTGTTTGA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTG-GTCTTTGA
** * * *
15493996 ATTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGT
63 ATTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * *
15494060 CAAACATTTACTACTTCTTTTAGAACTTCGGTTCCTGATAGTAGTCAAGACAATCCATTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15494125 ACCAATTTTT-GAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
* * * * *
15494148 TCGAGAAATCCATCTTTTGGTCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * *
15494213 AAAAACTTTTTT-ACTAGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAATTTGTTAA
66 AAAAACTTTTTTAAGT-GAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * * ** *
15494277 ACATTTACTAGTTCTTTCATAACTTTGGATCTTGAGAGTATTCAAGATTATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* *
15494342 AATTTTTAGAAGATTCCATGA
195 AATTTTTCGAACATTCCATGA
* * * *
15494363 TCGAGAAATCTCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * *
15494428 TCAAAACTTTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTGTCA
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
*
15494492 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15494557 CAATTTTTCGAACATTCCATTA
194 CAATTTTTCGAACATTCCATGA
* * * *
15494579 TCGAGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * ** * *
15494644 AAAAACCTTTTTATGAGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* ** ** * *
15494709 CATTTACTAGTTCATTTATAACTTCTATTCCTGCGAGTATTTAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15494774 ATTTTTTGAAGATTCGAT-A
196 ATTTTTCGAACATTCCATGA
* * * *
15494793 TCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTTGCAAAATAACTTTTGGTCTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA
** * * * *
15494858 TTAAAAACTCTTTTGCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTTCGAACTTCTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
15494922 AAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15494987 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
** * * * * *
15495010 TCATGAAAT-CTATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTCATT
1 TCGGGAAATGC-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * *
15495074 TAAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* *
15495139 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGACAGTATTCAAGACGATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* * *
15495204 AATTTTCCGAAGATTCGATGA
195 AATTTTTCGAACATTCCATGA
** * * * * * *
15495225 TCAAGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAAATTTTGTTTGTTTGAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * *
15495290 TTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
15495354 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
* *
15495419 CCAATTTTTTGAACTTTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * * *
15495442 TCGAGAAATCCATCTTTTGGTCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
15495507 AAAAACTTTTTT-ACTAGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTTCGAATTTGTTAA
66 AAAAACTTTTTTAAGT-GAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * ** *
15495571 ACATTTACTAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGATTATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* *
15495636 AATTTTTAGAAGATTCCATGA
195 AATTTTTCGAACATTCCATGA
* * *
15495657 TCGGGAAATCTCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * ** *
15495722 TAAAAACTTCTTCACA-TGAGAATTCTTTCTCTCTTGGTTCATT-GATGAGGTTTCGAACTTGTC
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGTC
* *
15495785 AAACATTTACTAGTTCTTTTATAACTTCGATTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
*
15495850 CCAATTTTTTGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * *
15495873 TCGGGAAATCCATCTTTTGGTCTAATTAGTTAGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
** * * * * * *
15495938 ---TTC-TTTTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
15495999 CATTTACTAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * * **
15496064 ATTTTCCAAAGATTTGATGA
196 ATTTTTCGAACATTCCATGA
* * * *
15496084 TCGGGAAATCGCATCATTTGGT-TAAAATATTTTGTCATTTTGCAAATAAATTTTGGTCTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * * *
15496148 TTAAAAGCTCTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTGTC
64 TTAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
15496212 AAACATTTACTAGTTCTTTTATAACTTCGATTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
* *
15496277 CCAATTTTTTGAACATTCCAAGA
193 CCAATTTTTCGAACATTCCATGA
* * * *
15496300 TCGGGAAATCCATCTTTTGGTCTAATTAGTTTCTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * * * *
15496365 AAAAACCTTTTTATGAGAGAGTTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
15496430 CATTTACTAGTTATTTTATAACTTCTGTTCCTGAGAGTATTGAAGACGATCCATTCCTTTGTCCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15496495 ATTTTTTGAAGATTCGAT-A
196 ATTTTTCGAACATTCCATGA
* * * * * * *
15496514 TCGGGAAATCGCATCATTTGTTCAAAATATTTTGCCATTTTGGAAATAAATTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * ** *
15496579 TAAAAGCTCTTTTACA-TGAGAATTCTTCCTCTCTTGGTTCTTGGATGAAGTTCTAAACTTTTCA
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* *
15496643 AACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15496708 CAATTTTTCGAACAATCCATGA
194 CAATTTTTCGAACATTCCATGA
** * * * *
15496730 TCATGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * ** ** *
15496795 AAAAACCTTCTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTATGAGTTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
15496860 CATTTACTAGTTCTTTTATAACTTCGGTTCCCGAGAGTATTCAAGATGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15496925 ATTTTCCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * * * *
15496945 TCAGGAAATTACATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTGAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * *
15497010 TTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
15497074 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15497139 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * *
15497162 TCGAGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
15497227 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * ** *
15497292 CATTTACTAGTTCTTTCATAACTTTGGATCTTGAGAGTATTCAAGATTATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* *
15497357 ATTTTTAGAAGATTCCATGA
196 ATTTTTCGAACATTCCATGA
* * * *
15497377 TCGAGAAATCTCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * *
15497442 TCAAAACTTTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTGTCA
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
*
15497506 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15497571 CAATTTTTCGAACATTCCATTA
194 CAATTTTTCGAACATTCCATGA
* * * *
15497593 TCGAGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * ** ** *
15497658 AAAAACCTTTTTATGAGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTATGAGTTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
15497723 CATTTACTAGTTCTTTTATAACTTCGGTTCCCGAGAGTATTCAAGATGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15497788 ATTTTCCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * * * *
15497808 TCAGGAAATTACATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTGAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * *
15497873 TTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
15497937 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15498002 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * *
15498025 TCGAGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
15498090 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * ** *
15498155 CATTTACTAGTTCTTTCATAACTTTGGATCTTGAGAGTATTCAAGATTATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* *
15498220 ATTTTTAGAAGATTCCATGA
196 ATTTTTCGAACATTCCATGA
* * * *
15498240 TCGAGAAATCTCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * *
15498305 TCAAAACTTTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTGTCA
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
*
15498369 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15498434 CAATTTTTCGAACATTCCATTA
194 CAATTTTTCGAACATTCCATGA
* * * *
15498456 TCGAGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * ** ** *
15498521 AAAAACCTTTTTATGAGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTATGAGTTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
15498586 CATTTACTAGTTCTTTTATAACTTCGGTTCCCGAGAGTATTCAAGATGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15498651 ATTTTCCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * * * *
15498671 TCAGGAAATTACATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTGAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * *
15498736 TTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
15498800 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15498865 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * *
15498888 TCGAGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
15498953 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
15499018 CATTTACTAGTTCTTTTATAACTTCTGTTCCTAAGAGTATTGAAGATGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* *
15499083 ATTTTTCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * *
15499103 TTC-GGAAATCGCATCATTTGGTCAAAATATTTTGTCAGTTTGCAAAATAACTTTTGGTCTTTGA
1 -TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGA
* * *
15499167 ATTAAAAACTCTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCATT-GATG-ACGTTTCGAACTT
63 ATTAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTC-TTGGACGAAC-TTCCGAACTT
*
15499229 GTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTT
125 GTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTT
15499294 CGACCAATTTTTCGAACATTCCATGA
190 CGACCAATTTTTCGAACATTCCATGA
* * * * *
15499320 TCGAGAAATCCATCTTTTGGTCTAATTAGCTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15499385 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ACCTGAATTTGTTAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCC-GAACTTGTCAA
* * * *
15499449 ACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTGAAGACGATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* *
15499514 AATTTTTCGAAGATTCGATGA
195 AATTTTTCGAACATTCCATGA
* * * * *
15499535 TCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCAGTTTGCAAAATAACTTTTGGTCTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA
* * * *
15499600 TTAAAAACTCTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCATT-GATGAAGTTTCGAACTTGT
64 TTAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGT
*
15499663 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15499728 ACCAATTTTTCGAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
* * * *
15499752 TCGAGAAA-GCCATCTTTTGGTGTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
1 TCGGGAAATG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * ** * *
15499816 TAAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAATTTGTTAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
15499881 ACATTTACTAGTTCTTTTATAACTTCTGTTCCTAAGAGTAGTCAAGACGATCCATTCCTTCGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
*
15499946 AATTTTTCGAACATTCCAAGA
195 AATTTTTCGAACATTCCATGA
* ** * * * *
15499967 GCATGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15500032 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
15500097 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* *
15500162 ATTTTTCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * * * *
15500182 TCAGGAAATTGCATCATTTGGTCAAAATGGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTGAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * * *
15500247 TTAAAAACTCTTTTCCA-TGAGAATTCTCTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
15500311 AAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15500376 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
** * * * * * *
15500399 TCATGAAATCCACCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGACTT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15500464 AAAAACCTTTTTAGGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
15500529 CATTTACTAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15500594 ATTTTCCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * * * *
15500614 TCAGGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGCAAAATAACTCTTGTTTGTTTGA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTG-GTCTTTGA
** * * * * * *
15500679 ATTAAAAACTCTTTTCCA-TGAGAATTATTCCTCTCTTGGTTCCTGGATGAAGTTCCAAACTTGT
63 ATTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * *
15500743 CAAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAAGATGATCCATTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15500808 ACCAATTTTTCGAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
** * * * * *
15500832 TCATGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGAAAACAACTTTAGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15500897 AAAAAC-CTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
15500961 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGT-GTATTCAAGATGATCCATTCCTTTGACC
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGA-TAGTATTCAAGACGATCCATTCCTTCGACC
* *
15501025 AA-TTTTCTGAAGATTCGATGA
195 AATTTTTC-GAACATTCCATGA
* * * * *
15501046 TCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTTGCAAAATAACTTTTGGTGTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA
** * *
15501111 TTAAAAACTCTTTTGCA-TGAGAATTCTTTCTCTCTTGGTTCTTGG-CTGAAGTTTCGAACTTGT
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGT
* ** *
15501174 CGAACATTTACTAGTTCTTTTATAACTTCAATTCCTGATAGTAGTCAAGACGATCCATTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15501239 ACCAATTTTTCGAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
** * * * *
15501263 TCATGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * * * *
15501328 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
15501393 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGACAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* *
15501458 A-TTTTCTGAAGATTCGATGA
196 ATTTTTC-GAACATTCCATGA
* * * * *
15501478 TCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTTGCAAAATAACTTTTGGTGTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA
** * **
15501543 TTAAAAACTCTTTTGCA-TGAGAATTCTTTCTCTCTTGGTTCTTGG-CTGAAGTTTTGAACTTGT
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGT
* ** *
15501606 CGAACATTTACTAGTTCTTTTATAACTTCAATTCCTGATAGTAGTCAAGACGATCCATTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15501671 ACCAATTTTTCGAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
** * * * *
15501695 TCATGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * * *
15501760 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
15501825 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGACAGTATTCAAGATGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15501890 ATTTTCCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * * * * *
15501910 TCGGAAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAAC-TTTGTTTGTTTGAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * *
15501974 TTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * *
15502038 AAACATTTACTAGTACTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTTGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15502103 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * * *
15502126 TCGAGAAATCCATCTTTTGGTCTAATTAGCTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
15502191 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ACCTGAATTTGTTAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCC-GAACTTGTCAA
* * * *
15502255 ACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTGAAGACGATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* *
15502320 AATTTTTCGAAGATTCGATGA
195 AATTTTTCGAACATTCCATGA
* * * * * *
15502341 TCAGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTTGCAAAATAACTTTTGGTCTTTGTA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA
* * * * * *
15502406 TTAAAAACTCTCTTACA-TGAGGATTCTTTCTCTCTTGGTTCATT-GATGAAGTTTCGAACTTGT
64 TTAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGT
* *
15502469 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGATGATCCATTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15502534 ACCAATTTTTCGAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
* * * * *
15502558 TCGAGAAATCCCT-ATTTTGGTCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
1 TCGGGAAATGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * * *
15502622 TAAAAACCTTTTTATGAGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTTAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
15502687 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTGAAGACGATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* * *
15502752 AATTTTCCGAAGATTCGATGA
195 AATTTTTCGAACATTCCATGA
* * * * * * * * *
15502773 TCAGAAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGCAAATAATTTTTGTTTGTTTTAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAA
** * * *
15502838 TTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
64 TTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
15502902 AAACATTTACTACTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
15502967 CCAATTTTTCGAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * *
15502990 TCGAGAAATCCATCTTTTGGTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
15503055 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
15503120 CATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * *
15503185 ATTTTCCGAAGATTCGATGA
196 ATTTTTCGAACATTCCATGA
* * *
15503205 TCAGGAAATTGCATCATTTGGTC-AAATTAGTTTGTCATTTT-TCATATAACTTTTGGTCTTTTG
1 TCGGGAAA-TGCATCATTTGGTCTAAA-TAGTTTGTCATTTTGT-AAACAACTTTTGGTC-TTTG
** * * * *
15503268 AATTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCATGGATGAAGTTCCAAACTTG
62 AATTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTG
*
15503332 TCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGAC-AGTCCATTCCTT
126 TCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGA-TCCATTCCTT
*
15503396 CGACCAATTTTTTGAACATTCCATGA
190 CGACCAATTTTTCGAACATTCCATGA
* * * * *
15503422 TCGAGAAATACATCTTTTGGTCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
15503487 AAAAACTTTTTT-ACTGGAGAATTATTTTTCTCTTGGTTCTTGGACGAACGTCCGAATTTGTTAA
66 AAAAACTTTTTTAAGT-GAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * ** * *
15503551 ACATTTACTAGTTCTTTTATAACTTTGGATCCTGAGAGTATTCAAGATTATCCATTCATTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* *
15503616 AATTTTTAGAAGATTCCATGA
195 AATTTTTCGAACATTCCATGA
* * *
15503637 TCGGGAAATCTCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * *
15503702 TCAAAACTTTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTGTCA
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* *
15503766 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAGGACGATCCATTCCTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
*
15503831 CAATTTTTCGAACATTCCATTA
194 CAATTTTTCGAACATTCCATGA
*** * * *
15503853 TTTAGAAATCCATC-TTTCGGTCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
1 TCGGGAAATGCATCATTT-GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * *
15503917 TAAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAATTTGTTAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
15503982 ACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACC
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACC
* *
15504047 AATTTTTCGAAGATTCGAT-A
195 AATTTTTCGAACATTCCATGA
* * * ** * *
15504067 TCGGGAAATCGTATCATTTGGTCAAAATATTTTGTCATCTTTCAAAATAACGTTTGGTCTTTGAA
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAA
* * * * *
15504132 TTAAAATCTCTTTTGCAA--GAGAATTCTTTCTCTCTTGGTTCTTGGAAGAAGTTTCGAACTTGT
64 TTAAAAACT-TTTT-TAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * *
15504195 CGAACATTTACAAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAGGACGATCCACTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
15504260 A-CACATTTTTCGAACATTCCATGA
192 ACCA-ATTTTTCGAACATTCCATGA
* * * * * *
15504284 TCGAGAAATCCATCTTTTGGTCTAATTGGCTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * * *
15504349 AAAAACCTTTTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCTGAATTTGTTAAA
66 AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
15504414 CATTTACTAGTTATTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACCA
131 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
* * * *
15504479 ATTTTCCGAAGATTCGATAA
196 ATTTTTCGAACATTCCATGA
* * * * * *
15504499 TCAGGAAATTGCATCATTTGGTCAAAATAGGTTGTCATTTT-TCAAATAACTTTTGTTTGTTTGA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTG-GTCTTTGA
** * * *
15504563 ATTAAAAACTCTTTTCCA-TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGT
63 ATTAAAAACT-TTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * *
15504627 CAAACATTTACTACTTCTTTTAGAACTTCGGTTCCTGATAGTAGTCAAGACAATCCATTCCTTCG
127 CAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCG
*
15504692 ACCAATTTTTTGAACATTCCATGA
192 ACCAATTTTTCGAACATTCCATGA
* * * * *
15504716 TCGAGAAATCCATCTTTTGGTCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
1 TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * *
15504781 AAAAACTTTTTT-ACTAGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAA-TGTTTTA
66 AAAAACTTTTTTAAGT-GAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT-TGTCA
* * * ** *
15504844 AACATTTACTAATTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGATTATCCATTCCTTTGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
* *
15504909 CAATTTTTAGAAGATTCCATGA
194 CAATTTTTCGAACATTCCATGA
* * * *
15504931 TCGAGAAATCTCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
15504996 TAAAATCTTTTTTACA-TGAGAATTGTTTCTCTCTTGGTTCATT-GATGAAGTTCCGAACTTGTC
65 TAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGTC
* * *
15505059 AAACATTTACTAGTTCTTTTATAGCTTCGATTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
128 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGA
*
15505124 CCAATTTTTCAAACATTCCATGA
193 CCAATTTTTCGAACATTCCATGA
* * * * *
15505147 TCGAGAAATTGCATCATTAGGTCTAAAGAATTTGTCATTTTTTAAACAACTTTT-GTGCTTTGAA
1 TCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT-CTTTGAA
* * * * * * * * * * *
15505211 CTAAATACATTTTTACGTGAGAATTGTTACCCTCTTGGTTCTTGGACGAACATACAAACTAGTCA
64 TTAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
** * * * * * * * * *
15505276 AAGTTTTACAAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCAAAACGATCCATTCATTTGAA
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
* *
15505341 CAATTTTTTGAA-ATTCCATGC
194 CAATTTTTCGAACATTCCATGA
* * * * *
15505362 T-GAGAAATCGAATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTGTTCTTAGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * *
15505426 TAAAAACTTTTTTACGTGAGAATTGC-TTCTCTATTAGTTCTTGGACGAACTTCCAAACTAGTCA
65 TAAAAACTTTTTTAAGTGAGAATT-CTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * * * *
15505490 AACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAACATGATCCATTCTTTCGAC
129 AACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGAC
* * *
15505555 TAATTTTTCGAACATTGCATGC
194 CAATTTTTCGAACATTCCATGA
* *
15505577 TTGGGAAATAGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
1 TCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * * *
15505642 TAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACATACGAACTGGTCAA
65 TAAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * *
15505707 ACTTTTACAAGTTCTTTCATAACTTCGATTCCTGAGAGTATTCAA
130 ACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAA
15505752 TACACCAATT
Statistics
Matches: 19846, Mismatches: 3266, Indels: 684
0.83 0.14 0.03
Matches are distributed among these distances:
210 19 0.00
211 230 0.01
212 426 0.02
213 128 0.01
214 1122 0.06
215 7470 0.38
216 6533 0.33
217 3677 0.19
218 237 0.01
219 4 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (215 bp):
TCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
AAAAACTTTTTTAAGTGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTATTCAAGACGATCCATTCCTTCGACCA
ATTTTTCGAACATTCCATGA
Found at i:15483350 original size:432 final size:429
Alignment explanation
Indices: 15481151--15505833 Score: 29439
Period size: 432 Copynumber: 57.3 Consensus size: 429
15481141 TCATTTGGTC
* * * * * *
15481151 AAACTTTTACTAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCC-TTCA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * ** ** * * *
15481215 GGCATTTTTTCGAACATTCCATGCTTTGGGTATCGCATCATTTAGTTTAAAA-AGTCTGTCATTT
66 -CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTT-GGTCAAAATAGTTTGTCATTT
* * * * * ** * **
15481279 CGTAAAGAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAGCTATTTCTCTCTTTCTTC
129 TGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC
** * * * * *
15481344 TTGGATAAAATTTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACATCGGTTCCTG-TGAGT
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAT-AGT
* * * *
15481408 ATTCAAGATGATCCATTCCTTCAACCAATTTTTCGTACATTCCATGATCGGGAAATCGCATCATT
258 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATT
15481473 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTAC-AT
322 TGGTCT-AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA-
* * * *** *
15481537 GAGAATT-TTTCCTCTCTTGGTTCTTTGACGAAATTTCGAACCAATC
385 GAGAATTGTTT-CTCTCTTGGTTCTTGGACG-AACTTCTAACTTGTT
* * * * * * *
15481583 AAACTTTTACTAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCCTTCC-TTCA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * ** *
15481647 GGCATTTTTTCGAACATTCCATGCTTC-GGGTATCGCATCATTTGGTTTAAAA-AGTTTGTCATT
66 -CCAATTTTTCGAAGATTCCATG-ATCAGGAAATCGCATCATTTGG-TCAAAATAGTTTGTCATT
* * * * * ** * **
15481710 TAGTAAAGAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGTGAGCTGTTTCTCTCTTTCTT
128 TTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTT
* * * *
15481775 CTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACATCGGTTCCTG-TGAG
193 CTTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAT-AG
* * *
15481839 TATTCAAAGATGATCCATTCCTTCAACCAATTTTTC-ATACATTCCATGATCGGGAAATCGCATC
257 TAGTC-AAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGATCGGGAAATC-CATC
* *
15481903 ATTTGGTCCTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
319 ATTTGGT-CTAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTAC
* * *
15481968 GTGTGAATTGTTTCTCTCTT-G---TT-----AACTTCTGAACTTGTC
383 GAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
* * * * * *
15482007 AAACCTTTACGAGTTCTTTTATAGCTTCAGTTCCTGAGAGTATTTAAGATGATCCATTCC-TT--
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * * *
15482069 -CAA-----C-CA-A--CCAT-ACTCGGGAAATCGTATCATTTGGACTAAACAGTTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGA-TCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * *
15482123 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTATGA-GAGAACTAC-TTCTCTCTTGGTT
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAA-TTCTTTCTCTCTTGGTT
* * * * * * *
15482186 CTTGGACGAACTTCCAAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCAGTTCTTGAGAGT
193 CTTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGT
* * ** * * * ** *
15482251 ATTCAAGGCGATCCATTCCTTTAACCAATTTTTCAAAGATTACATGATCGAAAAATTGCATCATT
258 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAA-TCCATCATT
* * * * *
15482316 TGGTCAAAATAATTTGCCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTG
322 TGGTC-TAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAG
* * * * *
15482381 AGAATTCTTTCTTTCTTAGTTCTTGGACGAACTTCCAAACTTGTC
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* * * * * *
15482426 AAACATTTACTAGTTCTTTTATTACGTCGATTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * * *
15482491 CCAATTTTT-GAACATTCCGTGATCGGGAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTT
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
15482555 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-AGTGAGAATTCTTTCTCTCTTGGTTCT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACA-TGAGAATTCTTTCTCTCTTGGTTCT
* * * **
15482619 TGGACGAAGTACCAAATTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCAAATAGTAG
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* *
15482684 TCAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCGTGATCGGGAAATCGCATCATTTG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTTG
* * *
15482749 GTCTAAATAGTTTTGTCATTTTGTAAACAACTTTTGGTTTTTTAATTAAATACTTTTTTACGAGA
324 GTCT-AATAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGA
* *
15482814 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTT
387 GAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTAACTTGTT
* * * *
15482858 AAACATTTACGAGTTCTTTAATAACTTCGGTTCCTGAGAATATTCAAGAGGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * *
15482923 CCAATTTTTAGAAGATTCCTTGATCAGGAAATCGCATTATTTGGTCAAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* *
15482988 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACTTTAGAATTCTTTCTCTCCTT-GTTCT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCT-CTTGGTTCT
* * * *
15483052 TGGACGAACTTCCGAACTTGTCAAACATTTACTAGTTCTTCTATAACTTTGGTTCCTGAAAGTAG
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* *
15483117 TCAAGACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGATTGGGAAATCGCATCATTTG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTTG
* * *
15483182 GTCATAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTAAATTAAAAACTTTTTTACAAGAG
324 GTC-TAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
* *
15483247 AATTGTTTCTCTCTTGGTTCTTAGATGAACTTCCTAACTTGTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* * *
15483290 AAACATTTA-TGAGTTCTTTTATGACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTAG
1 AAACATTTACT-AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTG
* ** * *
15483354 ACCAATTTTTTGAAGATTCCATGATTGGGAAATCGCATCATTTGGTCTAAATAGTTTGCCATTTT
65 ACCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* *
15483419 TTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTAGTTCT
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCT
* * * *
15483484 TAGACGAAGTACTGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAC
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* * ** *
15483549 TCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGATCAAGAAATCACATAATTTG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTTG
*
15483614 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTTTTTACGAGAG
324 GTCT-AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
* * *
15483679 AATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTAGTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* *
15483722 AAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACAATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * *
15483787 CCAATTTTTAGAAGATTCCATTATC-GAGAAATCGCATTATTTGGTCAAAATAGTTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* *
15483851 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTTAGAATTCTTTCTCTCCTT-GTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCT-CTTGGTTC
* * * * * *
15483915 TTGGATGAACTTCCGAACTTGTAAAACATTTACTAGTTCTTCTATAACTTTGGTTCCTGATAATA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * * *
15483980 GTCAAGATGATGCATTCTTTCGACCAATTTTTTGAACATTCCATGATCGGGAAATCGTATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTT
* * * * * *
15484045 GATCTTATATTGTTTGTCATTTTTTAAACAACTTTT-GTGCTTTGAACTAAATACTTTTTTACGT
323 GGTC-TA-ATAGTTTGTCATTTTGTAAACAACTTTTGGT-CTTTGAATTAAAAACTTTTTTACGA
* * * *
15484109 GAGAATTGTTTC-CTTCTTGGTTCTTGGACGAACATACAAACTAGTC
385 GAGAATTGTTTCTC-TCTTGGTTCTTGGACGAAC-TTCTAACTTGTT
* * * * * *
15484155 AAA-ATTTTACAAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCATTTG
1 AAACA-TTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTG
* * * * *
15484219 AGCAA-TTTTCTGAA-ATTCCATGCTGAGG-AATCGCATCATTTGGTCTAAATAGTTTGACATTT
65 ACCAATTTTTC-GAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTT
** * * * * *
15484281 TGTAAACGACTTGTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTATTAGTTC
129 TGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC
* * * * * *
15484346 TTGGATGAACTTCTGAACTTCGTCAAACATTTACGAGTTCTTTTATAACTTCGTTTCCTGAGAGT
194 TTGGACGAAGTTCCGAACTT-GTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGT
* * * * ** * *
15484411 ATTAAAGACGATCCATTCTTTCGACCAATTTTTTGAACATTCCATGCCCGGGAAATCGCTTCATC
258 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATT
* * * * * *
15484476 TGATCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTCGAATTAAATACTTATTTACGTG
322 TGGTCT-AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAG
* * * * * *
15484541 AGAGTTGTTTCCCTCTTGGTTCTTCGATGAACATACTAACTTGTC
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTAACTTGTT
* * * *
15484586 AAACTTTTA-TAAGTTCTTTTATAACTTCAGTTCCTGACAGTATTCAAGACAATCCATTCCTTTG
1 AAACATTTACT-AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTG
* * * ** * * *
15484650 ACAAATTTTTTGAAGATTCTATGATCAAAAAATCGTATCATTTGGTCAAAATAATTTGCCATTTT
65 ACCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * ** *
15484715 CTAAATAACTTTTGGTCTTTAAATTTAAAACTTTTTTATGTGAGAATTCTTTTTCTCTTGGTTCT
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCT
* * *
15484780 TGGACGAACTTTCGAACTTGTCAAACATTTACTAGTTCTTTTATTA-TGTCGGTTCCTGATAGTA
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACT-TCGGTTCCTGATAGTA
* * ** * * * *
15484844 GTCAAGATGATCCATTCCTTCGACTAATTTTTTTAACATTCCATAATTGAGAAATCGTATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTT
* *
15484909 GGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTTTTTACGAGA
323 GGTC-TAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGA
* * *
15484974 GAATTATTTCTCTCTTGGTTCTTAGATGAACTTCCTAACTTGTT
387 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
*
15485018 AAACATTTA-TGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTAG
1 AAACATTTACT-AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTG
* * * *
15485082 ACCAA-TTTTCTGAAGATTCCATGAACGGGAAATCGCGA-AATTTGGTCAAAATAGTTTGTTATT
65 ACCAATTTTTC-GAAGATTCCATGATCAGGAAATCGC-ATCATTTGGTCAAAATAGTTTGTCATT
* * * *
15485145 TTGTAAATAACATTTGGTGTTTAAATTAAAAACTTTTTTACGTGAGAATTC--TCTCTCTTGGTT
128 TTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTT
*
15485208 CTTGGACGAAGTTCCAAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGT
193 CTTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGT
*
15485273 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCTTTT
258 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTT
* * *
15485338 GGGCTAATTAGTTAGTCATTTTGTAAACAACTTTTGGTCTTTGAAATT----TCTTTTTTACGAG
323 GGTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG-AATTAAAAACTTTTTTACGAG
* *
15485399 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAATTTGTT
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
* *
15485444 AAACATTTACTAGTTCATTTATAACTTTGGTTCCTGAGAGTATTCAA-ACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * ** *
15485508 CCGATTTTTCGAACATTTGATGATCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * *
15485573 CAAATAACTTTTGGTCTTTGAATTAGAAGCTCTTTTACATGAGAACTCTTTCTCTCTTGGTTCTT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTT
* * * *
15485638 AGATGAAGTTTCGAACTTCTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGT
196 GGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGT
* * * *
15485703 CAAGACGATCCATTCCTTCGACCAATCTTTCGAACATTCCATGATTGAGAAATCCATCTTTTGGT
261 CAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGGT
* *
15485768 CTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGAGAGAA
326 CTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGAA
*
15485833 TTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTT
390 TTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
* * *
15485874 AAACATTTACTAGCTCTTTTATAACTTCTGTCCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
** * *
15485939 CCAATTTTAT-GAAGATTTGAT-ATCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTT
66 CCAATTTT-TCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * *
15486002 GCAAAATAACTTTTGGTCTTTGAATTAAAAACTCTTTTGCATGAGAATTCTTTCTCTCTTGGTTC
130 G-TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC
* ** * *
15486067 TTGGATGAAGTTTTGAACTTCTCAAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
** *
15486132 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCATGAAATCCATCTTTTG
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTG
* * * * *
15486197 GTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTCATTTAAAAACCTTTTTATGAGAG
324 GTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
*
15486262 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
*
15486305 AAACATTTACTAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * *
15486370 CCAATTTTCCGAAGATTCGATGATCAAGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * *
15486435 CAAATAACTTTTGTTTGTTTGAATTAAAAACTCTTTTCCATGAGAATTCTTTCTCTCTTGGTTCT
131 TAAATAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCT
* *
15486500 TGGATGAAGTTCCAAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
** *
15486565 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCATGAAATCCATCTTTTGG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGG
* * * * *
15486630 TCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTCATTTAAAAACCTTTTTATGAGAGA
325 TCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGA
*
15486695 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTT
389 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
15486737 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * *
15486802 CCAATTGTCCGAAGATTCGATGATCAAGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * * *
15486867 CAAATAACTTTTGTTTGTTTTAATTAAAAACTCTTTTCCATGAGAATTCTTTCTCTCTTGGTTCT
131 TAAATAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCT
* *
15486932 TGGATGAAGTTCCAAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* *
15486997 TCAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGATCGGGAAATCCATCTTTTGG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGG
* * *
15487062 GCTAATTAGTTAGTCATTTTGTAAACAACTTTTGGTCTTTGAAATT----TCTTTTTTACGAGAG
325 TCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG-AATTAAAAACTTTTTTACGAGAG
* * *
15487123 AATTGTTTCTCTCTTGGTTCTTGGATGAACTTTTGAATTTGTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
*
15487166 AAACATTTACTAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAA-ACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * ** *
15487230 CCGATTTTTCGAACATTTGATGATCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * *
15487295 CAAATAACTTTTGGTCTTTGAATTAGAAGCTCTTTTACATGAGAATTCTTTCTCTCTTGGTTCTT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTT
* * * * *
15487360 AGATGAAGTTTCGAACTTCTCAAACATTTACTAGTTCTTTTATAACTTCGATTCCTGATAGTAGT
196 GGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGT
* * * *
15487425 CAAGACGATCCATTCCTTCGACCAATCTTTCGAACATTCCATGATTGAGAAATCCATCTTTTGGT
261 CAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGGT
* *
15487490 CTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGAGAGAA
326 CTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGAA
*
15487555 TTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTT
390 TTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
* * *
15487596 AAACATTTACTAGCTCTTTTATAACTTCTGTTCCTGAGAGTATTCAAGACGATCCATTCTTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * *
15487661 CCAATTTTAT-GAAGATTCGAT-ATCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTT
66 CCAATTTT-TCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * *
15487724 GCAAAATAACTTTTGGTCTTTGAATTAAAAACTCTTTTGCATGAGAATTCTTTCTCTCTTGGTTC
130 G-TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC
* * * *
15487789 TTGGATGAAGTTTCGAACTTCTCAAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
** *
15487854 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCATGAAATCCATCTTTTG
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTG
* * * * *
15487919 GTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTCATTTAAAAACCTTTTTATGAGAG
324 GTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
*
15487984 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
*
15488027 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGACAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * *
15488092 CCAATTTTTCGAAGATTCGATGATCAAGTAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * * *
15488157 CAAATAA-ATTTGTTTGTTTGAATTAAAAAC-TCTTTCCATGAGAATTCTTTCTCTCTTGGTTCT
131 TAAATAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCT
* *
15488220 TGGATGAAGTTCCAAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* * * *
15488285 TCAAGACGATCCATTCCTTCGACCAATTTTTTGAACTTTCCATGATCGAGAAATCCATCTTTTGG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGG
* *
15488350 TCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACTAGAGA
325 TCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGA
* * * *
15488415 ATTATTTCTCTCTTGGTTCTTGGACAAACTTTCGAATTTGTT
389 ATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTAACTTGTT
* **
15488457 AAACATTTACTAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGATTATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * *
15488522 CCAATTTTTAGAAGATTCCATGATCGGGAAATCTCATCATTTGGTCAAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* *
15488587 TAAATAACTTTTGGTCTTTGAATTAAAAACTTCTTCACATGAGAATTCTTTCTCTCTTGGTTCAT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC-T
* * * *
15488652 T-GATGAGGTTTCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGATTCCTGATAGTAG
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* * *
15488716 TCAAGACGATCCATTCCTTGGACCAATTTTTTGAACATTCCATGATCGGGAAATCCATCTTTTGG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGG
* **
15488781 TCTAATTAGTTAGTCATTTTGTAAACAACTTTTGGTCTTTGAATT---TTCTTTTTTACGAGAGA
325 TCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGA
*
15488843 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTT
389 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
*
15488885 AAACATTTACTAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* ** * * *
15488950 CCAATTTTCCGAAGATTTGATGATCGGGAAATCGCATCATTTGGTTAAAATATTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * *
15489015 CAAATAAATTTTGGTCTTTGAATTAAAAGCTCTTTTACATGAGAATTCTTTCTCTCTTGGTTCTT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTT
* * * *
15489080 AGATGAAGTTTCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGATTCCTGATAGTAGT
196 GGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGT
* * *
15489145 CAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCAAGATCGGGAAATCCATCTTTTGGT
261 CAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGGT
* * *
15489210 CTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGAGAGAG
326 CTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGAA
* *
15489275 TTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAATTTGTT
390 TTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
* * * *
15489316 AAACATTTACTAGTTATTTTATAACTTCTGTTCCTGAGAGTATTGAAGACGATCCATTCCTTTGT
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * * *
15489381 CCAATTTTTTGAAGATTCGAT-ATCGGGAAATCGCATCATTTGTTCAAAATATTTTGCCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * *
15489445 GAAATAAATTTTGGTCTTTGAATTAAAAGCTCTTTTACATGAGAATTCTTCCTCTCTTGGTTCTT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTT
* ** * *
15489510 GGATGAAGTTCTAAACTTTTCAAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGT
196 GGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGT
* * ** *
15489575 CAAGATGATCCATTCCTTCGACCAATTTTTCGAACAATCCATGATCATGAAATCCATCTTTTGGT
261 CAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGGT
* * *
15489640 CTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATTAAAAACCTTTTTATGAGAGAA
326 CTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGAA
* **
15489705 TTGTTTCTCTCTTGGTTCTTGGACGAACTTATGAGTTTGTT
390 TTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
* *
15489746 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCCGAGAGTATTCAAGATGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * **
15489811 CCAATTTTCCGAAGATTCGATGATCAGGAAATTACATCATTTGGTCAAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * *
15489876 CAAATAACTTTTGTTTGTTTGAATTAAAAACTCTTTTCCATGAGAATTCTTTCTCTCTTGGTTCT
131 TAAATAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCT
* *
15489941 TGGATGAAGTTCCAAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* *
15490006 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGAGAAATCCATCTTTTGG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGG
* *
15490071 TCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGAGAGA
325 TCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGA
* * *
15490136 ATTGTTTCTCTCTTGGTTCTTGGACGATCTTCCGAATTTGTT
389 ATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* * * *
15490178 AAACATTTACTAGTTCTTTTATAACTTCTGTTCCTAAGAGTATTGAAGATGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * *
15490243 CCAATTTTTCGAAGATTCGATGATCCGGAAATCGCATCATTTGGTCAAAATATTTTGTCAGTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* *
15490308 CAAAATAACTTTTGGTCTTTGAATTAAAAACTCTTTTACATGAGAATTCTTTCTCTCTTGGTTCA
131 -TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC-
* *
15490373 TT-GATGAAGTTTCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * *
15490437 GTCAAGACGATCCATTCCTTCGACCAA-TTTTCGAACATTCCATGATCGAGAAATCCACCTTTTG
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTG
* *
15490501 GTCTAATCAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGAGAG
324 GTCTAAT-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
* *
15490566 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAATTTGTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
*
15490609 AAACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * *
15490674 CCAATTTTTTGAAGATTCGATGATCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCAGTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* *
15490739 CAAAATAACTTTTGGTCTTTGAATTAAAAACTCTTTTACATGAGAATTCTTTCTCTCTTGGTTCA
131 -TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC-
* *
15490804 TT-GATGAAGTTTCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* *
15490868 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGAGAAATCCATCTTTTG
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTG
* *
15490933 GTCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGAGAG
324 GTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
* *
15490998 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAATTTGTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
* * * *
15491041 AAACATTTACTAGTTCTTTTATAACTTCTGTTCCTAAGAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * * * *
15491106 CCAATTTTTCGAACATTCCAAGAGCATGAAATC-CATCTTTTGGTCTAATTAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * *
15491170 TAAACAACTTTAGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTGTTTCTCTCTTGGTTCT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTCT
* * * * * *
15491234 TGGACGAACTTCTGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTAT
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* * * * *
15491299 TCAAGACGATCCATTCCTTTGACCAATTTTTCGAAGATTCGATGATCAGGAAATTGCATCATTTG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAA-TCCATCATTTG
* * * * * * * *
15491364 GTCAAAATGGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTGAATTAAAAACTCTTTT-CCATG
324 GTC-TAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACGA-G
* * * * * *
15491428 AGAATTCTCTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* * * *
15491473 AAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * * *
15491538 CCAATTTTTCGAACATTCCATGATCATGAAATC-CACCTTTTGGTCTAATTAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * * *
15491602 TAAACAACTTTAGGTCTTTGACTTAAAAACCTTTTTAGGA-GAGAATTGTTTCTCTCTTGGTTCT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTCT
* ** * * *
15491666 TGGACGAACTTTTGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGAGT-GTA
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGA-TAGTA
* * * * **
15491730 TTCAAGATGATCCATTCCTTTGACCAA-TTTTCTGAAGATTTGATGATCGGGAAATCGCATCATT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTC-GAACATTCCATGATCGGGAAATC-CATCATT
* * * * * * *
15491794 TGGTCAAAATATTTTGTCATTTTGCAAAATAACTTTTGGTGTTTGAATTAAAAACTCTTTTGC-A
322 TGGTC-TAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA
* * * *
15491858 TGAGAATTCTTTCTCTCTTGGTTCTTGG-CTGAAGTTTCGAACTTGTC
385 -GAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAA-CTTCTAACTTGTT
* ** * * *
15491905 GAACATTTACTAGTTCTTTTATAACTTCAATTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * *
15491970 CCAATTTTTCGAACATTCCATGATCATGAAATC-CATCTTTTGGTCTAATTAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * *
15492034 TAAACAACTTTAGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTGTTTCTCTCTTGGTTCT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTCT
* * * * * *
15492098 TGGATGAAGTTCTGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGACAGTAT
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* * * * * * *
15492163 TCAAGATGATCCATTCCTTTGACCAATTTTCCGAAGATTCGATGATCGGAAAATTGCATCATTTG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAA-TCCATCATTTG
* * * * * * *
15492228 GTCAAAATAGTTTGTCATTTTGCAAATAAC-TTTGTTTGTTTGAATTAAAAACTCTTTT-CCATG
324 GTC-TAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACGA-G
* * * * *
15492291 AGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* * * * *
15492336 AAACATTTACTAGTACTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * *
15492401 CCAATTTTTCGAACATTCCATGATC-GAGAAATC-CATCTTTTGGTCTAATTAGCTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
15492464 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTATTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
** * * * *
15492528 TTGGACGAA-CACCTGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGT
194 TTGGACGAAGTTCC-GAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGT
* * * * ** * *
15492592 ATTGAAGACGATCCATTCCTTTGACCAATTTTTCGAAGATTTGATGATCAGCAAATCGCATCATT
258 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATT
* * * * * * *
15492657 TGGTCAAAATATTTTGTCATTTTGCAAAATAACTTTTGGTCTTTGTATTAAAAACTCTCTTAC-A
322 TGGTC-TAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA
* * * * * *
15492721 TGAGGATTCTTTCTCTCTTGGTTCATT-GATGAAGTTTTGAACTTGTC
385 -GAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACTTCT-AACTTGTT
* * * * *
15492768 AAACATTTACTACTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGATGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * *
15492833 CCAATTTTTCGAACATTCCATGATC-GAGAAATC-CGT-ATTTTGGTCTAATTAGTTTGTCATTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCA-TTTGGTCAAAATAGTTTGTCATTT
* * * * *
15492895 TGTAAACAACTTTTGGTCTTTGAATT-AAAACCTTTTTAGGA-GAAAATTGTTTCTCTCTTGGTT
129 TGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTT
* * * * *
15492958 CTTGGACGAACTTCTGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGT
193 CTTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGT
* * * * * * * * *
15493023 ATTGAAGACGATCCATTCCTTTGACCAA-TTTCCGAAGATTCGATGATCAGAAAATTGCATCATT
258 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAA-TCCATCATT
* * * * * * * * *
15493087 TGGTCAAAATAGTTTGTCATTTTGCAAATAATTTTTGTTTGTTTTAATTAAAAACTCTTTT-CCA
322 TGGTC-TAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACGA
* * * * * *
15493151 TGAGAATTCTTTCTCTCTTGCTTCTTGGATGAAGTTCCAAACTTGTC
385 -GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* * *
15493198 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * * *
15493263 CCAATTTTTCGAACATTCCATGATC-GAGAAATC-CATCTTTTGGTCTAATTAGTTCGTCAATTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
15493326 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTGTTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
* * * * *
15493390 TTGGACGAACTTCCGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * * *
15493455 TTCAAGACGATCCATTCCTTTGACCAATTTTTCGAAGATTCGAT-ATCGGGAAATCGTATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTT
* * ** * * * * * *
15493519 GGTCAAAATATTTTGTCATCTTTCAAAATAACGTTTGGTCTTTGAATTAAAATCTCTTTTGCAAG
323 GGTC-TAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAG
* * * * *
15493584 AGAATTCTTTCTCTCTTGGTTCTTGGAAGAAGTTTCGAACTTGTC
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTTCTAACTTGTT
* * * * * * * *
15493629 GAACATTTACAAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAGGACGATCCACTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * * *
15493694 CCAATTTTTCGAACATTCCATGATC-GAGAAATC-CATCTTTTGGTCTAATTGGCTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
15493757 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTGTTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
* * * * * * * *
15493821 TAGGACAAACTTCTGAATTTGTTAAACATTTACTAGTTATTTTATAACTTCGGTTCCTGAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * * * * * *
15493886 TTCAAGACGATCCATTCCTTTGACCAATTTTCCGAAGATTCGATAATCAGGAAATTGCATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAA-TCCATCATTT
* * * * * *
15493951 GGTCAAAATAGTTTGTCATTTT-TCAAATAACTTTTGTTTGTTTGAATTAAAAACTCTTTT-CCA
323 GGTC-TAATAGTTTGTCATTTTGT-AAACAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACGA
* * * * *
15494014 TGAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
385 -GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* * * * * *
15494061 AAACATTTACTACTTCTTTTAGAACTTCGGTTCCTGATAGTAGTCAAGACAATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * *
15494126 CCAATTTTT-GAACATTCCATGATC-GAGAAATC-CATCTTTTGGTCTAATTAGATTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* *
15494188 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTAC-TAGAGAATTATTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACAT-GAGAATTCTTTCTCTCTTGGTTC
* * * * * * * *
15494252 TTGGACGAACTTCCGAATTTGTTAAACATTTACTAGTTCTTTCATAACTTTGGATCTTGAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* ** * * * *
15494317 TTCAAGATTATCCATTCCTTTGACCAATTTTTAGAAGATTCCATGATCGAGAAATCTCATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTT
* * *
15494382 GGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTCAAAACTTTTTTAC-ATG
323 GGTC-TAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA-G
* * * * * *
15494446 AGAATTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTGTC
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTTCTAACTTGTT
* * *
15494491 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * *
15494556 CCAATTTTTCGAACATTCCATTATC-GAGAAATC-CATCTTTTGGTCTAATTAGTTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * *
15494619 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTCTTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
* ** * * * ** **
15494683 TTGGACGAACTTTTGAATTTGTTAAACATTTACTAGTTCATTTATAACTTCTATTCCTGCGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * * * *
15494748 TTTAAGACGATCCATTCCTTTGACCAATTTTTTGAAGATTCGAT-ATCGGGAAATCGCATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTT
* * * * * *
15494812 GGTCAAAATATTTTGTCATTTTGCAAAATAACTTTTGGTCTTTGAATTAAAAACTCTTTTGC-AT
323 GGTC-TAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA-
* * * * * *
15494876 GAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTTCGAACTTCTC
385 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTTCTAACTTGTT
* * * *
15494922 AAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * * *
15494987 CCAATTTTTCGAACATTCCATGATCATGAAATC-TATCTTTTGGTCTAATTAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * * * *
15495051 TAAACAACTTTAGGTCTTTCATTTAAAAACCTTTTTATGA-GAGAATTGTTTCTCTCTTGGTTCT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTCT
* * * * * *
15495115 TGGACGAACTTCTGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGACAGTAT
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* * * * ** *
15495180 TCAAGACGATCCATTCCTTTGACCAATTTTCCGAAGATTCGATGATCAAGAAATTGCATCATTTG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAA-TCCATCATTTG
* * * * * * * *
15495245 GTCAAAATAGTTTGTCATTTTGCAAATAAATTTTGTTTGTTTGAATTAAAAACTCTTTT-CCATG
324 GTC-TAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACGA-G
* * * * *
15495309 AGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* * *
15495354 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* ** * * * *
15495419 CCAATTTTTTGAACTTTCCATGATC-GAGAAATC-CATCTTTTGGTCTAATTAGATTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* *
15495482 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTAC-TAGAGAATTATTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACAT-GAGAATTCTTTCTCTCTTGGTTC
* * * * * * *
15495546 TTGGACAAACTTTCGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTTGGTTCCTGAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* ** * * *
15495611 TTCAAGATTATCCATTCCTTTGACCAATTTTTAGAAGATTCCATGATCGGGAAATCTCATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTT
* * * *
15495676 GGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTCTTCAC-ATG
323 GGTC-TAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA-G
* * ** * *
15495740 AGAATTCTTTCTCTCTTGGTTCATT-GATGAGGTTTCGAACTTGTC
386 AGAATTGTTTCTCTCTTGGTTC-TTGGACGA-ACTTCTAACTTGTT
* * * *
15495785 AAACATTTACTAGTTCTTTTATAACTTCGATTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * * * *
15495850 CCAATTTTTTGAACATTCCATGATCGGGAAATC-CATCTTTTGGTCTAATTAGTTAGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* ** *
15495914 TAAACAACTTTTGGTCTTTGAATT---TTC-TTTTTACGA-GAGAATTGTTTCTCTCTTGGTTCT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTAC-ATGAGAATTCTTTCTCTCTTGGTTCT
* * * * * * *
15495974 TGGACGAACTTCTGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCGATTCCTGAGAGTAT
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* * * * * **
15496039 TCAAGATGATCCATTCCTTTGACCAATTTTCCAAAGATTTGATGATCGGGAAATCGCATCATTTG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTTG
* * * * * *
15496104 GT-TAAAATATTTTGTCATTTTGCAAATAAATTTTGGTCTTTGAATTAAAAGCTCTTTTAC-ATG
324 GTCT--AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA-G
* * * * * *
15496167 AGAATTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTGTC
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTTCTAACTTGTT
* * * *
15496212 AAACATTTACTAGTTCTTTTATAACTTCGATTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * * * * *
15496277 CCAATTTTTTGAACATTCCAAGATCGGGAAATC-CATCTTTTGGTCTAATTAGTTTCTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * *
15496341 TAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTT--ATGAGAGAGTTGTTTCTCTCTTGGTTC
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGA-A-TTCTTTCTCTCTTGGTTC
* * * * * * * *
15496404 TTAGACGAACTTCTGAATTTGTTAAACATTTACTAGTTATTTTATAACTTCTGTTCCTGAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * * * * *
15496469 TTGAAGACGATCCATTCCTTTGTCCAATTTTTTGAAGATTCGAT-ATCGGGAAATCGCATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTT
* * * * * * * * *
15496533 GTTCAAAATATTTTGCCATTTTGGAAATAAATTTTGGTCTTTGAATTAAAAGCTCTTTTAC-ATG
323 GGTC-TAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA-G
* * * *
15496597 AGAATTCTTCCTCTCTTGGTTCTTGGATGAAGTTCTAAACTT-TT
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
* * * *
15496641 CAAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCG
1 -AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTG
* * * * * *
15496706 ACCAATTTTTCGAACAATCCATGATCATGAAATC-CATCTTTTGGTCTAATTAGTTTGTCATTTT
65 ACCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * * * *
15496770 GTAAACAACTTTAGGTCTTTGAATTAAAAACCTTCTTATGA-GAGAATTGTTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
* ** ** * * *
15496834 TTGGACGAACTTATGAGTTTGTTAAACATTTACTAGTTCTTTTATAACTTCGGTTCCCGAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * * * * * *
15496899 TTCAAGATGATCCATTCCTTTGACCAATTTTCCGAAGATTCGATGATCAGGAAATTACATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAA-TCCATCATTT
* * * * * * *
15496964 GGTCAAAATAGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTGAATTAAAAACTCTTTT-CCAT
323 GGTC-TAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACGA-
* * * * *
15497028 GAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
385 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* * *
15497074 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * *
15497139 CCAATTTTTCGAACATTCCATGATC-GAGAAATC-CATCTTTTGGTCTAATTAGTTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
15497202 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTGTTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
* * * * * * * *
15497266 TTGGACGAACTTCCGAATTTGTTAAACATTTACTAGTTCTTTCATAACTTTGGATCTTGAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* ** * * * *
15497331 TTCAAGATTATCCATTCCTTTGACCAATTTTTAGAAGATTCCATGATCGAGAAATCTCATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTT
* * *
15497396 GGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTCAAAACTTTTTTAC-ATG
323 GGTC-TAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA-G
* * * * * *
15497460 AGAATTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTGTC
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTTCTAACTTGTT
* * *
15497505 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * *
15497570 CCAATTTTTCGAACATTCCATTATC-GAGAAATC-CATCTTTTGGTCTAATTAGTTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * *
15497633 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTCTTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
* ** ** * * *
15497697 TTGGACGAACTTATGAGTTTGTTAAACATTTACTAGTTCTTTTATAACTTCGGTTCCCGAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * * * * * *
15497762 TTCAAGATGATCCATTCCTTTGACCAATTTTCCGAAGATTCGATGATCAGGAAATTACATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAA-TCCATCATTT
* * * * * * *
15497827 GGTCAAAATAGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTGAATTAAAAACTCTTTT-CCAT
323 GGTC-TAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACGA-
* * * * *
15497891 GAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
385 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* * *
15497937 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * *
15498002 CCAATTTTTCGAACATTCCATGATC-GAGAAATC-CATCTTTTGGTCTAATTAGTTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
15498065 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTGTTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
* * * * * * * *
15498129 TTGGACGAACTTCCGAATTTGTTAAACATTTACTAGTTCTTTCATAACTTTGGATCTTGAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* ** * * * *
15498194 TTCAAGATTATCCATTCCTTTGACCAATTTTTAGAAGATTCCATGATCGAGAAATCTCATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATTT
* * *
15498259 GGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTCAAAACTTTTTTAC-ATG
323 GGTC-TAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA-G
* * * * * *
15498323 AGAATTCTTTCTCTCTTGGTTCTTAGATGAAGTTTCGAACTTGTC
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTTCTAACTTGTT
* * *
15498368 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * *
15498433 CCAATTTTTCGAACATTCCATTATC-GAGAAATC-CATCTTTTGGTCTAATTAGTTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * *
15498496 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTCTTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
* ** ** * * *
15498560 TTGGACGAACTTATGAGTTTGTTAAACATTTACTAGTTCTTTTATAACTTCGGTTCCCGAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * * * * * *
15498625 TTCAAGATGATCCATTCCTTTGACCAATTTTCCGAAGATTCGATGATCAGGAAATTACATCATTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAA-TCCATCATTT
* * * * * * *
15498690 GGTCAAAATAGTTTGTCATTTTGCAAATAACTTTTGTTTGTTTGAATTAAAAACTCTTTT-CCAT
323 GGTC-TAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACGA-
* * * * *
15498754 GAGAATTCTTTCTCTCTTGGTTCTTGGATGAAGTTCCAAACTTGTC
385 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
* * *
15498800 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * *
15498865 CCAATTTTTCGAACATTCCATGATC-GAGAAATC-CATCTTTTGGTCTAATTAGTTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
15498928 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTGTTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
* * * * * *
15498992 TTGGACGAACTTCCGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCTGTTCCTAAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * * * *
15499057 TTGAAGATGATCCATTCCTTTGACCAATTTTTCGAAGATTCGATGATTC-GGAAATCGCATCATT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGA-TCGGGAAATC-CATCATT
* * * * * *
15499121 TGGTCAAAATATTTTGTCAGTTTGCAAAATAACTTTTGGTCTTTGAATTAAAAACTCTTTTAC-A
322 TGGTC-TAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA
* * * *
15499185 TGAGAATTCTTTCTCTCTTGGTTCATTGATGACG--TTTCGAACTTGTC
385 -GAGAATTGTTTCTCTCTTGGTTC-TTG--GACGAACTTCTAACTTGTT
* * *
15499232 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * *
15499297 CCAATTTTTCGAACATTCCATGATC-GAGAAATC-CATCTTTTGGTCTAATTAGCTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
15499360 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTGTTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
** * * * *
15499424 TTGGACGAA-CACCTGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGT
194 TTGGACGAAGTTCC-GAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGT
* * * * *
15499488 ATTGAAGACGATCCATTCCTTTGACCAATTTTTCGAAGATTCGATGATCGGGAAATCGCATCATT
258 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATC-CATCATT
* * * * * *
15499553 TGGTCAAAATATTTTGTCAGTTTGCAAAATAACTTTTGGTCTTTGAATTAAAAACTCTTTTAC-A
322 TGGTC-TAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGA
* * * * *
15499617 TGAGAATTCTTTCTCTCTTGGTTCATT-GATGAAGTTTCGAACTTGTC
385 -GAGAATTGTTTCTCTCTTGGTTC-TTGGACGAA-CTTCTAACTTGTT
* * *
15499664 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTCCTTCGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * ** *
15499729 CCAATTTTTCGAACATTCCATGATC-GAGAAAGC-CATCTTTTGGTGTAATTAGTTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
15499792 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGA-GAGAATTGTTTCTCTCTTGGTTC
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA-CATGAGAATTCTTTCTCTCTTGGTTC
* ** * * * * *
15499856 TTGGACGAACTTTTGAATTTGTTAAACATTTACTAGTTCTTTTATAACTTCTGTTCCTAAGAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * ** *
15499921 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCAAGAGCATGAAATCCATCTTTTG
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTG
* * *
15499986 GTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATTAAAAACCTTTTTATGAGAG
324 GTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
*
15500051 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
15500094 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * *
15500159 CCAATTTTTCGAAGATTCGATGATCAGGAAATTGCATCATTTGGTCAAAATGGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * * *
15500224 CAAATAACTTTTGTTTGTTTGAATTAAAAACTCTTTTCCATGAGAATTCTCTCTCTCTTGGTTCT
131 TAAATAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCT
* * *
15500289 TGGATGAAGTTCCAAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTAG
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
** * *
15500354 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCATGAAATCCACCTTTTGG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGG
* * * *
15500419 TCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGACTTAAAAACCTTTTTAGGAGAGA
325 TCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGA
*
15500484 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTT
389 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
*
15500526 AAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * *
15500591 CCAATTTTCCGAAGATTCGATGATCAGGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * * * * *
15500656 CAAAATAACTCTTGTTTGTTTGAATTAAAAACTCTTTTCCATGAGAATTATTCCTCTCTTGGTTC
131 -TAAATAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC
* * * *
15500721 CTGGATGAAGTTCCAAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCAGTTCCTGATAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* ** *
15500786 GTCAAGATGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCATGAAATCCATCTTTTG
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTG
* * * *
15500851 GTCTAATTAGTTTGTCATTTTGAAAACAACTTTAGGTCTTTGAATTAAAAAC-CTTTTATGAGAG
324 GTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
*
15500915 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
* *
15500958 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGTGTATTCAAGATGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * *
15501023 CCAA-TTTTCTGAAGATTCGATGATCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTT
66 CCAATTTTTC-GAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
15501087 GCAAAATAACTTTTGGTGTTTGAATTAAAAACTCTTTTGCATGAGAATTCTTTCTCTCTTGGTTC
130 G-TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC
* * **
15501152 TTGG-CTGAAGTTTCGAACTTGTCGAACATTTACTAGTTCTTTTATAACTTCAATTCCTGATAGT
194 TTGGAC-GAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGT
** *
15501216 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCATGAAATCCATCTTTT
258 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTT
* * *
15501281 GGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATTAAAAACCTTTTTATGAGA
323 GGTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGA
* * *
15501346 GAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCTGAATTTGTT
387 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
*
15501390 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGACAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * *
15501455 CCAA-TTTTCTGAAGATTCGATGATCGGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTT
66 CCAATTTTTC-GAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
15501519 GCAAAATAACTTTTGGTGTTTGAATTAAAAACTCTTTTGCATGAGAATTCTTTCTCTCTTGGTTC
130 G-TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC
** * **
15501584 TTGG-CTGAAGTTTTGAACTTGTCGAACATTTACTAGTTCTTTTATAACTTCAATTCCTGATAGT
194 TTGGAC-GAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGT
** *
15501648 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCATGAAATCCATCTTTT
258 AGTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTT
* * *
15501713 GGTCTAATTAGTTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATTAAAAACCTTTTTATGAGA
323 GGTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGA
* *
15501778 GAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTCTGAATTTGTT
387 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
* *
15501822 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGACAGTATTCAAGATGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * *
15501887 CCAATTTTCCGAAGATTCGATGATC-GGAAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAGG-AAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* * * * *
15501951 GCAAATAAC-TTTGTTTGTTTGAATTAAAAACTCTTTTCCATGAGAATTCTTTCTCTCTTGGTTC
130 GTAAATAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC
* * * *
15502015 TTGGATGAAGTTCCAAACTTGTCAAACATTTACTAGTACTTTTATAACTTCAGTTCCTGATAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * *
15502080 GTCAAGACGATCCATTCCTTTGACCAATTTTTCGAACATTCCATGATCGAGAAATCCATCTTTTG
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTG
* * *
15502145 GTCTAATTAGCTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGAGAG
324 GTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
** *
15502210 AATTGTTTCTCTCTTGGTTCTTGGACGAACACCTGAATTTGTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
* *
15502253 AAACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTGAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* *
15502318 CCAATTTTTCGAAGATTCGATGATCAGGAAATCGCATCATTTGGTCAAAATATTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * *
15502383 CAAAATAACTTTTGGTCTTTGTATTAAAAACTCTCTTACATGAGGATTCTTTCTCTCTTGGTTCA
131 -TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC-
* *
15502448 TT-GATGAAGTTTCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * *
15502512 GTCAAGATGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGAGAAATCCCT-ATTTT
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCA-TTT
* * *
15502576 GGTCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGAGA
323 GGTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGA
* *
15502641 AAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAATTTGTT
387 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
*
15502685 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTGAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * *
15502750 CCAATTTTCCGAAGATTCGATGATCAGAAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * * * *
15502815 CAAATAATTTTTGTTTGTTTTAATTAAAAACTCTTTTCCATGAGAATTCTTTCTCTCTTGGTTCT
131 TAAATAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCT
* * *
15502880 TGGATGAAGTTCCAAACTTGTCAAACATTTACTACTTCTTTTATAACTTCGGTTCCTGATAGTAG
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* *
15502945 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGAGAAATCCATCTTTTGG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGG
* *
15503010 TCTAATTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGAGAGA
325 TCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGA
* *
15503075 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAATTTGTT
389 ATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
*
15503117 AAACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * *
15503182 CCAATTTTCCGAAGATTCGATGATCAGGAAATTGCATCATTTGGTCAAATTAGTTTGTCATTTT-
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * *
15503246 TCATATAACTTTTGGTCTTTTGAATTAAAAACTCTTTTCCATGAGAATTCTTTCTCTCTTGGTTC
131 T-AAATAACTTTTGGTC-TTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC
* * *
15503311 ATGGATGAAGTTCCAAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * *
15503376 GTCAAGAC-AGTCCATTCCTTCGACCAATTTTTTGAACATTCCATGATCGAGAAATACATCTTTT
259 GTCAAGACGA-TCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTT
*
15503440 GGTCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACTG-G
323 GGTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTAC-GAG
* * * * *
15503504 AGAATTATTTTTCTCTTGGTTCTTGGACGAACGTCCGAATTTGTT
386 AGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTAACTTGTT
* * ** *
15503549 AAACATTTACTAGTTCTTTTATAACTTTGGATCCTGAGAGTATTCAAGATTATCCATTCATTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * *
15503614 CCAATTTTTAGAAGATTCCATGATCGGGAAATCTCATCATTTGGTCAAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
*
15503679 TAAATAACTTTTGGTCTTTGAATTCAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTT
* * *
15503744 AGATGAAGTTTCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGT
196 GGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGT
* * ***
15503809 CAGGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATTATTTAGAAATCCATC-TTTCGG
261 CAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTT-GG
* * *
15503873 TCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGAGAGA
325 TCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGA
* *
15503938 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAATTTGTT
389 ATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACTTGTT
*
15503980 AAACATTTACTAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * *
15504045 CCAATTTTTCGAAGATTCGAT-ATCGGGAAATCGTATCATTTGGTCAAAATATTTTGTCATCTTT
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCAT-TTT
** * * * * *
15504109 CAAAATAACGTTTGGTCTTTGAATTAAAATCTCTTTTGCAAGAGAATTCTTTCTCTCTTGGTTCT
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCT
* * * * *
15504174 TGGAAGAAGTTTCGAACTTGTCGAACATTTACAAGTTCTTTTATAACTTCAGTTCCTGATAGTAG
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* * * *
15504239 TCAGGACGATCCACTCCTTCGA-CACATTTTTCGAACATTCCATGATCGAGAAATCCATCTTTTG
260 TCAAGACGATCCATTCCTTCGACCA-ATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTG
* * * *
15504303 GTCTAATTGGCTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTATGAGAG
324 GTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
* *
15504368 AATTGTTTCTCTCTTGGTTCTTGGACAAACTTCTGAATTTGTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTT
*
15504411 AAACATTTACTAGTTATTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * *
15504476 CCAATTTTCCGAAGATTCGATAATCAGGAAATTGCATCATTTGGTCAAAATAGGTTGTCATTTT-
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * *
15504540 TCAAATAACTTTTGTTTGTTTGAATTAAAAACTCTTTTCCATGAGAATTCTTTCTCTCTTGGTTC
131 T-AAATAACTTTTG-GTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC
* * * *
15504605 TTGGATGAAGTTCCAAACTTGTCAAACATTTACTACTTCTTTTAGAACTTCGGTTCCTGATAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * *
15504670 GTCAAGACAATCCATTCCTTCGACCAATTTTTTGAACATTCCATGATCGAGAAATCCATCTTTTG
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTG
* *
15504735 GTCTAATTAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACTAGAG
324 GTCTAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
* * *
15504800 AATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAA-TGTTTT
388 AATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTAACT-TGTT
* * **
15504843 AAACATTTACTAATTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGATTATCCATTCCTTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* *
15504908 CCAATTTTTAGAAGATTCCATGATC-GAGAAATCTCATCATTTGGTCAAAATAGTTTGTCATTTT
66 CCAATTTTTCGAAGATTCCATGATCAG-GAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* *
15504972 GTAAATAACTTTTGGTCTTTGAATTAAAATCTTTTTTACATGAGAATTGTTTCTCTCTTGGTTCA
130 GTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTC-
* * *
15505037 TT-GATGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAGCTTCGATTCCTGATAGTA
194 TTGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTA
* * * *
15505101 GTCAAGACGATCCATTCCTTCGACCAATTTTTCAAACATTCCATGATCGAGAAATTGCATCATTA
259 GTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAA-TCCATCATTT
* * * * *
15505166 GGTCTAA-AGAATTTGTCATTTTTTAAACAACTTTT-GTGCTTTGAACTAAATACATTTTTACGT
323 GGTCTAATAG--TTTGTCATTTTGTAAACAACTTTTGGT-CTTTGAATTAAAAACTTTTTTACGA
* * * * * *
15505229 GAGAATTGTTACCCTCTTGGTTCTTGGACGAACATACAAACTAGTC
385 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTAACTTGTT
** * * * * * * *
15505275 AAAGTTTTACAAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCAAAACGATCCATTCATTTGA
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
* * * * * * *
15505340 ACAATTTTTTGAA-ATTCCATGCTGA-GAAATCGAATCATTTGGTCTAAATAGTTTTTCATTTTG
66 CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * * *
15505403 TAAACAACTTTTGTTCTTAGAATTAAAAACTTTTTTACGTGAGAATTGC-TTCTCTATTAGTTCT
131 TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATT-CTTTCTCTCTTGGTTCT
* * * * * * *
15505467 TGGACGAACTTCCAAACTAGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTAT
195 TGGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAG
* * * * * * * * *
15505532 TAAACATGATCCATTCTTTCGACTAATTTTTCGAACATTGCATGCTTGGGAAATAGCATCATTTG
260 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAAT-CCATCATTTG
* * * *
15505597 ATCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAG
324 GTCT-AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAG
* * * * * *
15505662 AATTATTTCCCTCTTGGTTCTTGGACGAACATACGAACTGGTC
388 AATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTAACTTGTT
* * * *
15505705 AAACTTTTACAAGTTCTTTCATAACTTCGATTCCTGAGAGTATTC---A--AT--A---C----A
1 AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
*
15505756 CCAA-TTTTCTGAAGATTCCATGAT-TGGAAAATCGCATCATTTGGTCAAAATAGTTTGTCATTT
66 CCAATTTTTC-GAAGATTCCATGATCAGG-AAATCGCATCATTTGGTCAAAATAGTTTGTCATTT
*
15505819 TGTAAATGACTTTTG
129 TGTAAATAACTTTTG
15505834 ATCAGGAAAT
Statistics
Matches: 22196, Mismatches: 1733, Indels: 658
0.90 0.07 0.03
Matches are distributed among these distances:
409 1 0.00
410 125 0.01
411 141 0.01
412 1 0.00
413 1 0.00
414 3 0.00
415 5 0.00
416 7 0.00
417 10 0.00
418 45 0.00
419 62 0.00
420 4 0.00
423 9 0.00
424 57 0.00
425 108 0.00
426 108 0.00
427 778 0.04
428 486 0.02
429 180 0.01
430 2709 0.12
431 6811 0.31
432 9589 0.43
433 943 0.04
434 10 0.00
435 3 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (429 bp):
AAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA
CCAATTTTTCGAAGATTCCATGATCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTG
TAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTT
GGACGAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGT
CAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCCATCATTTGGT
CTAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGAAT
TGTTTCTCTCTTGGTTCTTGGACGAACTTCTAACTTGTT
Found at i:15505846 original size:56 final size:56
Alignment explanation
Indices: 15505784--15505889 Score: 176
Period size: 56 Copynumber: 1.9 Consensus size: 56
15505774 CATGATTGGA
* **
15505784 AAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATGACTTTTGATCAGG
1 AAATCGCATCATTTGGTCAAAATAGCTTGTCATTTTGTAAAAAACTTTTGATCAGG
*
15505840 AAATCGCATCATTTGGTCTAAATAGCTTGTCATTTTGTAAAAAACTTTTG
1 AAATCGCATCATTTGGTCAAAATAGCTTGTCATTTTGTAAAAAACTTTTG
15505890 GTCTTTGAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (56 bp):
AAATCGCATCATTTGGTCAAAATAGCTTGTCATTTTGTAAAAAACTTTTGATCAGG
Found at i:15506475 original size:156 final size:157
Alignment explanation
Indices: 15506179--15506484 Score: 420
Period size: 154 Copynumber: 2.0 Consensus size: 157
15506169 CGAACTTGTC
* * * *
15506179 AAACATTTACTAGTTCTTTTAGAACTTCAGTTCTTGATAGTAGTCAAGACGAGATCGATTTCTTC
1 AAACATTTACGAGTTCTTTTAGAACTTCAGTTCTTGAGAGTAGTCAAGACGAGATCCATTCCTTC
* * * * *
15506244 GACCAATTTTTTGAATATTCCGTGATCGAGAAATCACATCATTTGGTATAATAGTTTGTCATTTT
66 GACCAATTTTTCGAAGATTCCATGATCGAAAAATCACATCATTTGGTAAAATAGTTTGTCATTTT
15506309 GTAAACAACTTTTGGTCTTTAAATCAA
131 GTAAACAACTTTTGGTCTTTAAATCAA
* * * *
15506336 AAACATTTACGA-TTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGAC-A-ATCCATTCCTTT
1 AAACATTTACGAGTTCTTTTAGAACTTCAGTTCTTGAGAGTAGTCAAGACGAGATCCATTCCTTC
* * *
15506398 GACCTATTTTTCGAAGATTCCATGATCGAAAAATCGCATCATTTGGTCAAAATAGTTTTTCATTT
66 GACCAATTTTTCGAAGATTCCATGATCGAAAAATCACATCATTTGGT-AAAATAGTTTGTCATTT
*
15506463 TGTAAATTAACTTTTGGTCTTT
130 TGTAAA-CAACTTTTGGTCTTT
15506485 GAATTTAATT
Statistics
Matches: 130, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
154 50 0.38
155 22 0.17
156 47 0.36
157 11 0.08
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (157 bp):
AAACATTTACGAGTTCTTTTAGAACTTCAGTTCTTGAGAGTAGTCAAGACGAGATCCATTCCTTC
GACCAATTTTTCGAAGATTCCATGATCGAAAAATCACATCATTTGGTAAAATAGTTTGTCATTTT
GTAAACAACTTTTGGTCTTTAAATCAA
Found at i:15510913 original size:18 final size:17
Alignment explanation
Indices: 15510892--15510925 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
15510882 TCACAATTTC
15510892 TTTCAGTCTCTCTTTCTT
1 TTTCAGTCTCT-TTTCTT
*
15510910 TTTCATTCTCTTTTCT
1 TTTCAGTCTCTTTTCT
15510926 CACAACTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.06, C:0.26, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTCAGTCTCTTTTCTT
Found at i:15511987 original size:27 final size:28
Alignment explanation
Indices: 15511928--15511996 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 28
15511918 TAAATCAAAT
*
15511928 TTTTTCTTCTTCTTTTTTCAAACTTCAA
1 TTTTTCTTCTTATTTTTTCAAACTTCAA
* *
15511956 ATTTTCTT-TTATTTTTTCAATATTTC-A
1 TTTTTCTTCTTATTTTTTCAA-ACTTCAA
15511983 TTTTT-TTCTT-TTTT
1 TTTTTCTTCTTATTTT
15511997 GAATTTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
26 6 0.17
27 18 0.51
28 11 0.31
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.70
Consensus pattern (28 bp):
TTTTTCTTCTTATTTTTTCAAACTTCAA
Found at i:15511988 original size:28 final size:27
Alignment explanation
Indices: 15511926--15511994 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 27
15511916 TTTAAATCAA
*
15511926 ATTTTTTCTTCTTCTTTTTTCAAACTTC
1 ATTTTTTCTT-TTATTTTTTCAAACTTC
** *
15511954 AAATTTTCTTTTATTTTTTCAATATTTC
1 ATTTTTTCTTTTATTTTTTCAA-ACTTC
15511982 ATTTTTTTCTTTT
1 A-TTTTTTCTTTT
15511995 TTGAATTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
27 11 0.33
28 13 0.39
29 9 0.27
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.68
Consensus pattern (27 bp):
ATTTTTTCTTTTATTTTTTCAAACTTC
Found at i:15513788 original size:17 final size:17
Alignment explanation
Indices: 15513768--15513811 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
15513758 ACTCGAATTT
15513768 TTTTCTTCTTTCGAATC
1 TTTTCTTCTTTCGAATC
* ** *
15513785 TTTTTTTAATTCGAATT
1 TTTTCTTCTTTCGAATC
15513802 TTTTCTTCTT
1 TTTTCTTCTT
15513812 CTTTTTTCAA
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.14, C:0.16, G:0.05, T:0.66
Consensus pattern (17 bp):
TTTTCTTCTTTCGAATC
Found at i:15513859 original size:27 final size:27
Alignment explanation
Indices: 15513802--15513871 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
15513792 AATTCGAATT
15513802 TTTTCTTCTTCTTTTTTCAAACTTCAAA
1 TTTTCTT-TTCTTTTTTCAAACTTCAAA
* * *
15513830 TTTTCTTTTATTTTTTCAATATTTC-GA
1 TTTTCTTTTCTTTTTTCAA-ACTTCAAA
15513857 TTTT-TTTTCTTTTTT
1 TTTTCTTTTCTTTTTT
15513872 TGAATTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.27
27 16 0.43
28 11 0.30
ACGTcount: A:0.16, C:0.14, G:0.01, T:0.69
Consensus pattern (27 bp):
TTTTCTTTTCTTTTTTCAAACTTCAAA
Found at i:15513861 original size:28 final size:28
Alignment explanation
Indices: 15513801--15513872 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
15513791 TAATTCGAAT
*
15513801 TTTTTCTTCTTCTTTTTTCAAACTTCAA
1 TTTTTCTTCTTATTTTTTCAAACTTCAA
* * *
15513829 ATTTTCTT-TTATTTTTTCAATATTTCGA
1 TTTTTCTTCTTATTTTTTCAA-ACTTCAA
*
15513857 TTTTTTTTCTT-TTTTT
1 TTTTTCTTCTTATTTTT
15513873 GAATTTTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
27 11 0.31
28 23 0.64
29 2 0.06
ACGTcount: A:0.15, C:0.14, G:0.01, T:0.69
Consensus pattern (28 bp):
TTTTTCTTCTTATTTTTTCAAACTTCAA
Found at i:15515669 original size:17 final size:17
Alignment explanation
Indices: 15515649--15515692 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
15515639 ACTCGAATTT
15515649 TTTTCTTCTTTCGAATC
1 TTTTCTTCTTTCGAATC
* ** *
15515666 TTTTTTTAATTCGAATT
1 TTTTCTTCTTTCGAATC
15515683 TTTTCTTCTT
1 TTTTCTTCTT
15515693 CTTTTTTCAA
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.14, C:0.16, G:0.05, T:0.66
Consensus pattern (17 bp):
TTTTCTTCTTTCGAATC
Found at i:15515740 original size:27 final size:27
Alignment explanation
Indices: 15515683--15515752 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
15515673 AATTCGAATT
15515683 TTTTCTTCTTCTTTTTTCAAACTTCAAA
1 TTTTCTT-TTCTTTTTTCAAACTTCAAA
* * *
15515711 TTTTCTTTTATTTTTTCAATATTTC-GA
1 TTTTCTTTTCTTTTTTCAA-ACTTCAAA
15515738 TTTT-TTTTCTTTTTT
1 TTTTCTTTTCTTTTTT
15515753 TGAATTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.27
27 16 0.43
28 11 0.30
ACGTcount: A:0.16, C:0.14, G:0.01, T:0.69
Consensus pattern (27 bp):
TTTTCTTTTCTTTTTTCAAACTTCAAA
Found at i:15515742 original size:28 final size:28
Alignment explanation
Indices: 15515682--15515753 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
15515672 TAATTCGAAT
*
15515682 TTTTTCTTCTTCTTTTTTCAAACTTCAA
1 TTTTTCTTCTTATTTTTTCAAACTTCAA
* * *
15515710 ATTTTCTT-TTATTTTTTCAATATTTCGA
1 TTTTTCTTCTTATTTTTTCAA-ACTTCAA
*
15515738 TTTTTTTTCTT-TTTTT
1 TTTTTCTTCTTATTTTT
15515754 GAATTTTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
27 11 0.31
28 23 0.64
29 2 0.06
ACGTcount: A:0.15, C:0.14, G:0.01, T:0.69
Consensus pattern (28 bp):
TTTTTCTTCTTATTTTTTCAAACTTCAA
Found at i:15517547 original size:17 final size:17
Alignment explanation
Indices: 15517527--15517570 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
15517517 ACTCGAATTT
15517527 TTTTCTTCTTTCGAATC
1 TTTTCTTCTTTCGAATC
* ** *
15517544 TTTTTTTAATTCGAATT
1 TTTTCTTCTTTCGAATC
15517561 TTTTCTTCTT
1 TTTTCTTCTT
15517571 CTTTTTTCAA
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.14, C:0.16, G:0.05, T:0.66
Consensus pattern (17 bp):
TTTTCTTCTTTCGAATC
Found at i:15517618 original size:27 final size:27
Alignment explanation
Indices: 15517561--15517630 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
15517551 AATTCGAATT
15517561 TTTTCTTCTTCTTTTTTCAAACTTCAAA
1 TTTTCTT-TTCTTTTTTCAAACTTCAAA
* * *
15517589 TTTTCTTTTATTTTTTCAATATTTC-GA
1 TTTTCTTTTCTTTTTTCAA-ACTTCAAA
15517616 TTTT-TTTTCTTTTTT
1 TTTTCTTTTCTTTTTT
15517631 GAATTTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.27
27 16 0.43
28 11 0.30
ACGTcount: A:0.16, C:0.14, G:0.01, T:0.69
Consensus pattern (27 bp):
TTTTCTTTTCTTTTTTCAAACTTCAAA
Found at i:15517620 original size:28 final size:28
Alignment explanation
Indices: 15517560--15517630 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 28
15517550 TAATTCGAAT
*
15517560 TTTTTCTTCTTCTTTTTTCAAACTTCAA
1 TTTTTCTTCTTATTTTTTCAAACTTCAA
* * *
15517588 ATTTTCTT-TTATTTTTTCAATATTTCGA
1 TTTTTCTTCTTATTTTTTCAA-ACTTCAA
*
15517616 TTTTTTTTCTT-TTTT
1 TTTTTCTTCTTATTTT
15517631 GAATTTTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
27 11 0.31
28 22 0.63
29 2 0.06
ACGTcount: A:0.15, C:0.14, G:0.01, T:0.69
Consensus pattern (28 bp):
TTTTTCTTCTTATTTTTTCAAACTTCAA
Found at i:15518922 original size:50 final size:50
Alignment explanation
Indices: 15518836--15518966 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 50
15518826 TGCATGACTT
* *
15518836 GATTTAATGATGCAAACTTTAACTAACTTGGGAGTTACATAATGCATG-ATAG
1 GATTT-ATGATGCAAA-TTTAACTAACATGGAAGTTACATAATGCATGTA-AG
* * * *
15518888 GATTTATGATGCATATTTAACTAACATGTAAGTTACTTAATGCATGTAAT
1 GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTAAG
* *
15518938 TATTTATGATGCAAACTTAACTAATCATG
1 GATTTATGATGCAAATTTAACTAA-CATG
15518967 AGAGTTAATG
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
50 49 0.72
51 14 0.21
52 5 0.07
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTAAG
Found at i:15519199 original size:17 final size:17
Alignment explanation
Indices: 15519168--15519200 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15519158 CAAACACTTA
15519168 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
15519185 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
15519201 ATTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:15520105 original size:180 final size:179
Alignment explanation
Indices: 15519796--15520132 Score: 469
Period size: 180 Copynumber: 1.9 Consensus size: 179
15519786 TAAAAAACTT
* * *
15519796 TTGGTCGTTGAATTAAAAACTTATTTACGTGGAAATTATTTCTCTCTTGTTCTTGGACGAACTTC
1 TTGGTCGTTGAATTAAAAACATATTTACGTGGAAATTATTTCTCTCTTGTTATTGGACGAAATTC
* * *
15519861 CAAAATTTTCAAACTTTAACGAGTTCTTCTATAACTTTGGTTACTGAGAGTATTCAAGACGATCC
66 CAAAATTGTCAAACTTTAACGAGTTCTTCTATAACTTTGATTACTGAAAGTATTCAAGACGATCC
*
15519926 ATTCCTTCGACCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCA
131 ATTCCTTCAACCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCA
* *
15519975 TTGGTCGTTGAATTAAAAACATATTTACGT-GAGAATTATTTCTCTCTTGGTTATTTGATGAAAT
1 TTGGTCGTTGAATTAAAAACATATTTACGTGGA-AATTATTTCTCTCTT-GTTATTGGACGAAAT
* * * * * * *
15520039 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGAT
64 TCCAAAATTGTCAAACTTTAACGAGTTCTTCTATAACTTTGATTACTGAAAGTATTCAAGACGAT
* * * *
15520104 CCTTTCCTTTAAGCAATTTTCCGAACATT
129 CCATTCCTTCAACCAATTTTCCAAACATT
15520133 TTGTGCTCCG
Statistics
Matches: 136, Mismatches: 20, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
178 2 0.01
179 44 0.32
180 90 0.66
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (179 bp):
TTGGTCGTTGAATTAAAAACATATTTACGTGGAAATTATTTCTCTCTTGTTATTGGACGAAATTC
CAAAATTGTCAAACTTTAACGAGTTCTTCTATAACTTTGATTACTGAAAGTATTCAAGACGATCC
ATTCCTTCAACCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCA
Found at i:15520513 original size:216 final size:214
Alignment explanation
Indices: 15519982--15520517 Score: 546
Period size: 216 Copynumber: 2.5 Consensus size: 214
15519972 TCATTGGTCG
* * * * *
15519982 TTGAATTAAAAACATATTTACGTGAGAATTATTTCTCTCTTGGTTATTTGATGAA-ATTTCGAAC
1 TTGAATTAAAAACATATTTACATGAGAATTTTTTCTCTCTTGGTTCTTAGATGAACA-TACGAAC
* * * * *
15520046 TTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCTTTCC
65 TTGTC-AACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCC
* * * ** * * *
15520111 TTTAAGCAATTTTCCGAACATTTTGTGCTCCGAAAAAAACATCAGTTGGTCTAAATAGTTTGCCA
129 TTCAACCAATTTTCCGAACATTCTAAGATCCGAAAAAAACATAAGTTGGTCTAAATAGTTTACCA
* *
15520176 TTTTGTAAACAACTTTAGGTT
194 TTTTGAAAACAACTTTAGGTA
* * * * *
15520197 TATGAATTAAAAACTTATTTACATGAGAATTTTCTCTCTCTTGGTTCTTGGATG-ACTTTACAAA
1 T-TGAATTAAAAACATATTTACATGAGAATTTTTTCTCTCTTGGTTCTTAGATGAAC-ATACGAA
* * * *
15520261 CTTGTCAAATATTTACGAGTTATTTTAT-GACTTCGGTTCCTGAGAGTATTCAAGATGATCCATT
64 CTTGTCAACT-TTTACGAGTTCTTTTATAG-CTTCGGTTCCTGAAAGTATTCAAGACGATCCATT
** *
15520325 CCTTCAACCAATTTTCCGAACATTCTAAGAT-C-AAGAAATCGCATAATTTGGTCTAAATAGTTT
127 CCTTCAACCAATTTTCCGAACATTCTAAGATCCGAA-AAA-AACATAAGTTGGTCTAAATAGTTT
* * **
15520388 ATCGTTTT-AAAGACAACTTTCTGTAA
190 ACCATTTTGAAA-ACAACTTTAGGT-A
*
15520414 TTGAATTAAAAACATATTTACAT-ATGAATTTTTTCTCTCTTGGTTCTTAGACGAACATACGAAC
1 TTGAATTAAAAACATATTTACATGA-GAATTTTTTCTCTCTTGGTTCTTAGATGAACATACGAAC
** * *
15520478 AAGTCACACTTTTACAAATTCTTTTATAGCTTCGGTTCCT
65 TTGTCA-ACTTTTACGAGTTCTTTTATAGCTTCGGTTCCT
15520518 TTCCTTTGGG
Statistics
Matches: 261, Mismatches: 47, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
214 2 0.01
215 12 0.05
216 241 0.92
217 6 0.02
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.40
Consensus pattern (214 bp):
TTGAATTAAAAACATATTTACATGAGAATTTTTTCTCTCTTGGTTCTTAGATGAACATACGAACT
TGTCAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTT
CAACCAATTTTCCGAACATTCTAAGATCCGAAAAAAACATAAGTTGGTCTAAATAGTTTACCATT
TTGAAAACAACTTTAGGTA
Found at i:15520950 original size:216 final size:215
Alignment explanation
Indices: 15520537--15521559 Score: 1199
Period size: 216 Copynumber: 4.8 Consensus size: 215
15520527 GCAATTTTTC
* ** *
15520537 AAACA-TTCAATGCTTGAGAAAAAGCATCACTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
1 AAACATTTC-ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
*
15520601 TTTGGTCTATGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
65 TTTGGTCTATGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAAT
* * * * * *
15520666 TACAAACTTATCAAACATTTACGAGTTATTTTATGACTTCGGTTCCTGAGAGTATTAAAG-CTGA
130 T-CGAACTTGTCAAACATTTACGAGTTCTTTTATAACATCGGTTCCTGAGAGTATTCAAGAC-GA
15520730 TCCATTCCTTCGACCAATATTCT
193 TCCATTCCTTCGACCAATATTCT
* * * *
15520753 GAACATTTCATGCTCGAGAAATCGCATCATTTTGTCTAAAAAGTTTTTCATTTTGTAAACAACTT
1 AAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * ** *
15520818 TTGGTCTGTCAATTAAAAACTTATTTACGTGAGACTTGTTTCTTTCTTACTTCTTGGATGAAATT
66 TTGGTCTATGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATT
* * *
15520883 CTGAACTTGTCAAACATTTACGAGTTCTTTTATAACATCGGTTCTTGCGAGTTTTCAAGACGATC
131 C-GAACTTGTCAAACATTTACGAGTTCTTTTATAACATCGGTTCCTGAGAGTATTCAAGACGATC
*
15520948 CATTCCTTCGACCAATTTTCT
195 CATTCCTTCGACCAATATTCT
* * * * *
15520969 AAAAATTCCATTCTCGAGAAATCGCATCACTTT-GTCTAAATAGTTTGTCATTCT-TAAAGAACT
1 AAACATTTCATGCTCGAGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
15521032 TTTGGTCTATGAATTAAAAATTTATTTACATGAGAATTTTTTCTCTCCTGGTTCTTGGACGAACT
65 TTTGGTCTATGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAAT
* * * * * * *
15521097 TACGAACTTGTCAAACATTTATGAGTTATTTTATGACTTCGAG-TCTTGAGAGTATTGAAGATGA
130 T-CGAACTTGTCAAACATTTACGAGTTCTTTTATAACATCG-GTTCCTGAGAGTATTCAAGACGA
15521161 TCCATTCCTTCGACCAA-ATTTCT
193 TCCATTCCTTCGACCAATA-TTCT
* *
15521184 GAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAA-ATGTTTGTCATTTTGTAAAAAACT
1 AAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAACT
* ** **
15521248 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGCTGTTTCTCTCTTTCTTCTTGGACGAAAT
65 TTTGGTCTATGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAAT
* * ** **
15521313 CTTGAACTTGTCAAACATTTACGAGTTCTTTTATAACATTGGTTCCTCTGAGTATTCAAGATAAT
130 -TCGAACTTGTCAAACATTTACGAGTTCTTTTATAACATCGGTTCCTGAGAGTATTCAAGACGAT
* *
15521378 CCATTCCTTCGACCAATTTTCC
194 CCATTCCTTCGACCAATATTCT
* * * *
15521400 AAACA-TT-A---TCAAGAAATCACATCATTTGGTCTAAATAGTTTGTCGTTTTGGAAACAACTT
1 AAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * *
15521460 TTGGTC-ATTGAATTAAAAACTAATTTACATGTGAATTTTTTTCTCTCTTGGTTCTTGGACTAAC
66 TTGGTCTA-TGAATTAAAAACTTATTTACGTGAGAA-TTGTTTCTCTCTTGGTTCTTGGACGAA-
* * * *
15521524 ATACGAACTAGTCAAACTTTTACGAATTCTTTTATA
128 ATTCGAACTTGTCAAACATTTACGAGTTCTTTTATA
15521560 GCTTCGATTC
Statistics
Matches: 685, Mismatches: 105, Indels: 38
0.83 0.13 0.05
Matches are distributed among these distances:
211 74 0.11
212 52 0.08
213 2 0.00
214 5 0.01
215 181 0.26
216 363 0.53
217 8 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.39
Consensus pattern (215 bp):
AAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
TTGGTCTATGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATT
CGAACTTGTCAAACATTTACGAGTTCTTTTATAACATCGGTTCCTGAGAGTATTCAAGACGATCC
ATTCCTTCGACCAATATTCT
Found at i:15522000 original size:215 final size:213
Alignment explanation
Indices: 15521582--15525717 Score: 4023
Period size: 215 Copynumber: 19.3 Consensus size: 213
15521572 TTCCTTTGGG
* * * *
15521582 CAATTTTCCGAACATTCCATGCTCGAGAAA-AGCAT-ACTTGGTCTAAATAGTTTGTCA-TTTGT
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGT
*
15521644 AAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAATTGTCTCTCTCTTGGTTCTTG
65 AAACAACTTTTGGTCT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * *
15521709 GACAAACTTACGAACTTGTCAAACATTTACGAGTTATTTTATGACTTCGATTCTTGAGAGTA-TC
129 GAC-AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTC
* *
15521773 GAAGACGATCCATTCCATCGTC
193 -AAGACGATCCATTCCTTCGAC
* * * * * * * *
15521795 CAATATTCCAAACATTTCATGCTCGAGAAATCGCATCATTTTGTCTAAAAGTTTTTCATTCTGTA
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTA
* * * * *
15521860 AACAACTTTTGGTTTGTGAATTAAAAACATATTTATGTGGGAATTGTTTATCTCTTGGTTCTTGG
66 AACAACTTTTGGTCT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
15521925 ACAAGCTTTCGAACTTGTCAAACCTTTACAAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCA
130 ACAA-CTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCA
* *
15521990 AGATGATCCATTCCTTTGAC
194 AGACGATCCATTCCTTCGAC
* * * * * * *
15522010 CAATTTTTTGAACATTCCATGCTTGGAAAATAGCA-CACTTGATCTAAAAAGTTTTTCATTTTGT
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGT
* *
15522074 AAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTA
65 AAACAACTTTTGGTCT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * * *
15522137 AATAAACTTTCGAACCTGTGAAACATTTACAAGTTCTTTTATAACTTTGGATCCTGAGAGTATTC
129 GA-CAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTC
* *
15522202 AATACGATCCAATCCTTCGAC
193 AAGACGATCCATTCCTTCGAC
* * * * *
15522223 CAA-TTTTCTGAACATTCCATTCTTGAGG-AATCACATCATTTGGACTAAAAAGCTTGTCA-TTT
1 CAATTTTTC-GAACATTCCATGCTCG-GGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTT
* * * *** *
15522285 GTAAACAACTTTTGGTCTTTGAATTTAAAACTCATTTACTTGAGTGCTGTTTCTCTCTTGCTTCC
63 GTAAACAACTTTTGGTC-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-C
* * * * * * * ** * *
15522350 TAGAAGAAATTCCGAACATGTCAAACATTTACGAGTTCTTTTATAACATCAATTCCTGTGAGTTT
126 TTGGACAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTAT
* *
15522415 TCAAGATGATTCATTCCTTCGAC
191 TCAAGACGATCCATTCCTTCGAC
* * * * * * *
15522438 CAATTTTT-AAAAAATCCATGATCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTGTGG
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGT
* * *
15522502 AAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGT-AGAAATTGTTTCTCTCTT-GCTCTT
65 AAACAACTTTTGGTC-TTGAATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTT
* * * ** *
15522565 GGATTAAC-TTCTAAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTAT
128 GGA-CAACTTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTAT
15522629 TCAAGACGATCCATTCCTTCGAC
191 TCAAGACGATCCATTCCTTCGAC
* * * * *
15522652 CAA-TTTTCTGACCATTCCATGCTCGGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTCTG
1 CAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTG
* * *
15522716 TAAACAACTTTTGGTCTATAAATAAAAAACTTATTTACGTGAGAATTG-CT-TCTCTTGGTTCTT
64 TAAACAACTTTTGGTCT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
** * * ** * * ** *
15522779 AAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAACTTTTGTTCCTTAGAGTATT
128 GGA-CAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
* *
15522844 CAAGACGATCCATTCCATCGAT
192 CAAGACGATCCATTCCTTCGAC
* * * *
15522866 CAATTTTCCGAACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGT
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGT
* * *
15522931 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTTTCTCTTGGTTCTTT
65 AAACAACTTTTGGTC-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * * * * *
15522996 GACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATTT
129 GAC-AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTC
*
15523061 AAGACGAT-C---CCTTCGAG
193 AAGACGATCCATTCCTTCGAC
* * * * * *
15523078 AAATTTTTTGAACGTTCCATGCTTGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGC
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGT
* **
15523143 AAACAACTTTTGGTCTGTGAATT-AAAACTTATTTACGTGAGAGTTGTTTCTCTCTTTTTTCTTG
65 AAACAACTTTTGGTCT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * * * * *
15523207 GATGAA-ATTCTGAACTCGTCAAACATGTACAAGTTCTTTTATAACATCGGCTCCCGTGAGTATT
129 GA-CAACTTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
* *
15523271 CAAGATGATCCATTCCTTCAAC
192 CAAGACGATCCATTCCTTCGAC
* * *
15523293 CAATTTTTC-ATACATTCCATGATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTG
1 CAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTG
* * * * *
15523357 GAAAGAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTGCA-AAATGTTTATATCTT-GTTCT
64 TAAACAACTTTTGGT-CTTGAATTAAAAACTTATTTACGTG-AGAATTGTTTCTCTCTTGGTTCT
* * * *
15523420 TGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTACAACTTCGGTTCCTAAGAGTAT
127 TGGAC-AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTAT
* *
15523485 TCAAGACTATCCATTCCTTAGAC
191 TCAAGACGATCCATTCCTTCGAC
** * * * *
15523508 CAATTTTTTAAACATTCCATGCTAGGGAAATTGCATCATTTGGACTAAAAAGTTTGGCATTTTGT
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGT
* ** *
15523573 AAACAACTTTTGGACCTTGAATTAAAAACTTATTTACGTGAGAGCTGTTTCTCTCTTGCTTCTTG
65 AAACAACTTTTGG-TCTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * * *
15523638 GACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTATAACATCGGTTCCT-ATGAGTTTT
129 GAC-AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGA-GAGTATT
15523702 CAAGACGATCCATTCCTTCGAC
192 CAAGACGATCCATTCCTTCGAC
* * * * * * * * * * *
15523724 CAATTTTTTGAA-AATCCACGATCGCGAAATCGCATTAGTTGGTCTAAAGAGTTTATCAATGTGG
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGT
* * **
15523788 AAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGT-AGGAATTGTTTCTCTCTT-ACTCTT
65 AAACAACTTTTGGTC-TTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTT
* * * * ** * * *
15523851 CGATTAAC-TTCTAAACTTTTCAAATTTTTATGAGTTGTTCTATAACTTCGGTTCCTGAGAGTAT
128 GGA-CAACTTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTAT
*
15523915 TCAAGACGATCCATTCCTTCAAC
191 TCAAGACGATCCATTCCTTCGAC
* * * * *
15523938 CAATTTTTC-AACCATTCCATGCTCAGGAAATCGCATCACTTGATCTAAAAATTTTTCATTTTGT
1 CAATTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGT
* * * *
15524002 AAACAATTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTG-CT-TCTCTTGGTTCTTA
65 AAACAACTTTTGGTCT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * * * * *
15524065 AATGAACTTCCTAACTAGTGAAACATTTACAAGTTCTTTTATAACTTCTGTTCCTTAGAGTATTC
129 GA-CAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTC
* *
15524130 AAGACGATCCATTCCATCGAT
193 AAGACGATCCATTCCTTCGAC
* *
15524151 CAATTTTTCGAACATTCCATTCTC-TGAAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTG
1 CAATTTTTCGAACATTCCATGCTCGGGAAA-TCGCATCATTTGGTCTAAAA-GTTTGTCATTTTG
* * *
15524215 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTTTCTCTTAGTTCTT
64 TAAACAACTTTTGGTC-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * * * * * *
15524280 TGACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATT
128 GGAC-AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
* * *
15524345 CCAGACGATCCCTTCCTTCGAG
192 CAAGACGATCCATTCCTTCGAC
* * * *
15524367 AAATTTTTCGAACATTCCATGCTTCGGG-TATCGCATTATTTGGTCTAAAAAGTTTATCATTTTG
1 CAATTTTTCGAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTG
* * * * **
15524431 CAAACAACTTTTGGTCTGTGAATTAAAAACTTATTTACGGGGGAGTTGTTTCTCTCTTTCTTCTT
64 TAAACAACTTTTGGTCT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * * * * *
15524496 GGATGAAATTTCGAACTCGTGAAACATGTACGAGTTCTTTTATAACATCGGTTCCCGTGAGTATT
128 GGA-CAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
* * *
15524561 CAAGATGATCCATTCCATCAAC
192 CAAGACGATCCATTCCTTCGAC
* * *
15524583 CAATTTTTC-ATACATTCCATGATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTG
1 CAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTG
* * * *
15524647 GAAACAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTGCA-AAATGTTTATATCTT-GTTCT
64 TAAACAACTTTTGGT-CTTGAATTAAAAACTTATTTACGTG-AGAATTGTTTCTCTCTTGGTTCT
* * * * *
15524710 TGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAACTTCGGTTCGTAAGAGTAT
127 TGGAC-AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTAT
*
15524775 TCAAGACGATCCATTCCTTAGAC
191 TCAAGACGATCCATTCCTTCGAC
* *
15524798 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGT
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGT
* *
15524863 AAACAACTTTTGGAAT-TTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGCTTCTT
65 AAACAACTTTTGG--TCTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * * * * * * * *
15524927 GGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAACATCGATTCTTGTGAGTTTT
128 GGAC-AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
15524992 CAAGACGATCCA-TCCTTCGAC
192 CAAGACGATCCATTCCTTCGAC
* * * * * * *
15525013 CAATTTTTCGAA-AATCCATGATCGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGG
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGT
* * * *
15525077 AAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGT-AGGAATTGTTTCTCTCTTTG-TCCT
65 AAACAACTTTTGGTC-TTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTT
* * * ** *
15525140 AGATTAAC-TTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTGCGAGTAT
128 GGA-CAACTTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTAT
*
15525204 TCAAGATGATCCATTCCTTCGAC
191 TCAAGACGATCCATTCCTTCGAC
* * * * ** *
15525227 CAATTTTTCGATCATTCTATGCTCGGGAAATCGCACCATTTGATCTGAAAAAATT-TCATTCTGT
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGT
* * *
15525291 AAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTG-CT-TCTCTTGGTTCTTA
65 AAACAACTTTTGGTCT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * ** * * * ** * *
15525354 AATGAACTTTCGAACCAGTGAAACATTTACAAGTTCTTTAATAACTTCTATTCCTTAGAGTATGC
129 GA-CAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTC
* *
15525419 AAGACGATCCATTCCATCGAT
193 AAGACGATCCATTCCTTCGAC
* * * * *
15525440 CAATTTTCCGAACATTCCATTCTCCGGAAGTCGCATCATTTGGTCTAAAAGGTTTTTCATTTTGT
1 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGT
* * * * *
15525505 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAAATCTTTTTCTCTTGGTTCTTT
65 AAACAACTTTTGGTC-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * * * *
15525570 GACAAAATTTAGAACTTGCCAAACTTTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATTC
129 GAC-AACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTC
* *
15525635 AAGACGATCCCTTCCTTCGAG
193 AAGACGATCCATTCCTTCGAC
* * * * * * *
15525656 AAATTTTTTGAATATTCCATGCTTCGGG-TATCACATTATTTGGTCTAAAAAGTTTATCATTT
1 CAATTTTTCGAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTT
15525718 ACGAGGGAAT
Statistics
Matches: 3199, Mismatches: 612, Indels: 221
0.79 0.15 0.05
Matches are distributed among these distances:
210 3 0.00
211 86 0.03
212 106 0.03
213 494 0.15
214 716 0.22
215 1035 0.32
216 737 0.23
217 21 0.01
218 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (213 bp):
CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTA
AACAACTTTTGGTCTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
CAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAG
ACGATCCATTCCTTCGAC
Found at i:15522872 original size:643 final size:643
Alignment explanation
Indices: 15521619--15525716 Score: 4476
Period size: 643 Copynumber: 6.4 Consensus size: 643
15521609 AAAAGCATAC
* *
15521619 TTGGTCTAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGT
1 TTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
** * * * * * * *
15521683 GAGAATTGTCTCTCTCTTGGTTCTTGGACA-AACTTACGAACTTGTCAAACATTTACGAGTTATT
66 GAGAGCTGTTTCTCTCTTGCTTCTTGGA-AGAAATTCCAAACATGTCAAACATTTACGAGTTCTT
* * * * * * * ** * *
15521747 TTATGACTTCGATTCTTGAGAG-TATCGAAGACGATCCATTCCATCGTCCAATATTCCAAACATT
130 TTATAACATCGATTCCTGTGAGTTTTC-AAGACGATCCATTCCTTCGACCAAT-TTTTAAAAAAT
* * * * * * *
15521811 TCATGCTCGAGAAATCGCATCATTTTGTCT-AAAAGTTTTTCATTCTGTAAACAACTTTTGGT-T
193 CCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTATCATTGTGGAAACAACTTTTGGTCT
* * * * * *
15521874 TGTGAATTAAAAACATATTTATGTGGGAATTGTTTATCTCTTGGTTCTTGGA-CAAGCTT-TCGA
258 T-TGAATTAAAAACTTATTTACGTAGGAATTGTTTCTCTCTT-GCTCTTGGATTAA-CTTCT-GA
* * *
15521937 ACTTGTCAAACCTTTACAAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGATGATCCATT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATT
** * * * * *
15522002 CCTTTGACCAATTTTTTGAACATTCCATGCTTGGAAAATAGCA-CACTTGATCTAAAAAGTTTTT
384 CCTTCAACCAATTTTCTG-ACATTCCATGCTCGGGAAATCGCATCATTTGATCTAAAAAGTTTTT
*
15522066 CATTTTGTAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGG
448 CATTTTGTAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGCTTCTCTTGG
* * * * *
15522131 TTCTTAAATAAACTTTCGAACCTGTGAAACATTTACAAGTTCTTTTATAACTTTGGATCCTGAGA
513 TTCTTAAATGAACTTTCGAACCAGTGAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTAGA
* * * *
15522196 GTATTCAATACGATCCAATCCTTCGACCAATTTTCTGAACATTCCATTCTTGAGGAA-TCACATC
578 GTATTCAAGACGATCCATTCCATCGACCAATTTTCTGAACATTCCATTCTTG-GGAAGTCGCATC
15522260 AT
642 AT
* * * * *
15522262 TTGGACTAAAAAGCTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTTAAAACTCATTTACTT
1 TTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * *
15522326 GAGTGCTGTTTCTCTCTTGCTTCCTAGAAGAAATTCCGAACATGTCAAACATTTACGAGTTCTTT
66 GAGAGCTGTTTCTCTCTTGCTTCTTGGAAGAAATTCCAAACATGTCAAACATTTACGAGTTCTTT
* * *
15522391 TATAACATCAATTCCTGTGAGTTTTCAAGATGATTCATTCCTTCGACCAATTTTTAAAAAATCCA
131 TATAACATCGATTCCTGTGAGTTTTCAAGACGATCCATTCCTTCGACCAATTTTTAAAAAATCCA
* * * *
15522456 TGATCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTGTGGAAATAACTTTTGGTCTTTG
196 TGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTATCATTGTGGAAACAACTTTTGGTCTTTG
* * * *
15522521 AATTAAAAACTTTTTTACGTAGAAATTGTTTCTCTCTTGCTCTTGGATTAACTTCTAAACTTTTC
261 AATTAAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGCTCTTGGATTAACTTCTGAACTTGTC
* * * *
15522586 AAATTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCATTCCTTCGA
326 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCAA
* *
15522651 CCAATTTTCTGACCATTCCATGCTCGGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTCTG
391 CCAATTTTCTGA-CATTCCATGCTCGGGAAATCGCATCATTTGATCTAAAAAGTTTTTCATTTTG
*
15522716 TAAACAACTTTTGGTCTATAAATAAAAAACTTATTTACGTGAGAATTGCTTCTCTTGGTTCTTAA
455 TAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGCTTCTCTTGGTTCTTAA
* **
15522781 ATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAACTTTTGTTCCTTAGAGTATTCA
520 ATGAACTTTCGAACCAGTGAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCA
* *
15522846 AGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCTCT-GGAAGTCGCATCAT
585 AGACGATCCATTCCATCGACCAATTTTCTGAACATTCCATTCT-TGGGAAGTCGCATCAT
*
15522905 TTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
1 TTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
** * * * * * * * * * *
15522970 GAGAATTCTTTTTCTCTTGGTTCTTTGACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTT
66 GAGAGCTGTTTCTCTCTTGCTTCTTGGAAGAAATTCCAAACATGTCAAACATTTACGAGTTCTTT
* * ** * ***
15523035 TATAACTTCGATTCCT-TAAAGTATTT-AAGACGAT-C---CCTTCGAGAAATTTTTTGAACGTT
131 TATAACATCGATTCCTGT-GAGT-TTTCAAGACGATCCATTCCTTCGACCAA-TTTTTAAAAAAT
* * * * * *
15523094 CCATGCTTGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCT
193 CCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTATCATTGTGGAAACAACTTTTGGTCT
* * ** * *
15523159 GTGAATT-AAAACTTATTTACGT-GAGAGTTGTTTCTCTCTTTTTTCTTGGATGAAATTCTGAAC
258 TTGAATTAAAAACTTATTTACGTAG-GAATTGTTTCTCTC-TTGCTCTTGGATTAACTTCTGAAC
* * * * * * * *
15523222 TCGTCAAACATGTACAAGTTCTTTTATAACATCGGCTCCCGTGAGTATTCAAGATGATCCATTCC
321 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCC
* * * * *
15523287 TTCAACCAATTTTTCAT-ACATTCCATGATCGGGAAATCGCATCATATGGTCCT-AATAGTTTGT
386 TTCAACCAA-TTTTC-TGACATTCCATGCTCGGGAAATCGCATCATTTGAT-CTAAAAAGTTTTT
* * * * * *
15523350 CATTTTGGAAAGAACTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGCA-AAATGTTTATATC
448 CATTTTGTAAACAACTTTTGGT-CTATAAATTAAAAACTTATTTACGTG-AGAATTG-CT-TCTC
** * ** * * ** *
15523413 TT-GTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTACAACTTCGGTTCCT
509 TTGGTTCTTAAATGAACTTTCGAACCAGTGAAACATTTACAAGTTCTTTTATAACTTCGGTTCCT
* * * * * * * * * *
15523477 AAGAGTATTCAAGACTATCCATTCCTTAGACCAATTTTTTAAACATTCCATGCTAGGGAAATTGC
574 TAGAGTATTCAAGACGATCCATTCCATCGACCAATTTTCTGAACATTCCATTCTTGGGAAGTCGC
15523542 ATCAT
639 ATCAT
* * * *
15523547 TTGGACTAAAAAGTTTGGCATTTTGTAAACAACTTTTGGACCTTGAATTAAAAACTTATTTACGT
1 TTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* *
15523612 GAGAGCTGTTTCTCTCTTGCTTCTTGGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTT
66 GAGAGCTGTTTCTCTCTTGCTTCTTGGAAGAAATTCCAAACATGTCAAACATTTACGAGTTCTTT
* * **
15523677 TATAACATCGGTTCCTATGAGTTTTCAAGACGATCCATTCCTTCGACCAATTTTTTGAAAATCCA
131 TATAACATCGATTCCTGTGAGTTTTCAAGACGATCCATTCCTTCGACCAATTTTTAAAAAATCCA
* * * * * * *
15523742 CGATCGCGAAATCGCATTAGTTGGTCTAAAGAGTTTATCAATGTGGAAATAACTTTTGGTCTTTG
196 TGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTATCATTGTGGAAACAACTTTTGGTCTTTG
* * * * *
15523807 AATTAAAAACTTTTTTACGTAGGAATTGTTTCTCTCTTACTCTTCGATTAACTTCTAAACTTTTC
261 AATTAAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGCTCTTGGATTAACTTCTGAACTTGTC
* * * * *
15523872 AAATTTTTATGAGTTGTTCTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCAA
326 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCAA
* * *
15523937 CCAATTTT-TCAACCATTCCATGCTCAGGAAATCGCATCACTTGATCTAAAAA-TTTTTCATTTT
391 CCAATTTTCT-GA-CATTCCATGCTCGGGAAATCGCATCATTTGATCTAAAAAGTTTTTCATTTT
*
15524000 GTAAACAATTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGCTTCTCTTGGTTCTTA
454 GTAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGCTTCTCTTGGTTCTTA
* * * *
15524065 AATGAACTTCCTAACTAGTGAAACATTTACAAGTTCTTTTATAACTTCTGTTCCTTAGAGTATTC
519 AATGAACTTTCGAACCAGTGAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTC
* *
15524130 AAGACGATCCATTCCATCGATCAATTTT-TCGAACATTCCATTCTCT-GAAAGTCGCATCAT
584 AAGACGATCCATTCCATCGACCAATTTTCT-GAACATTCCATTCT-TGGGAAGTCGCATCAT
*
15524190 TTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
1 TTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
** * * * * * * * * *
15524255 GAGAATTCTTTTTCTCTTAG-TTCTTTGACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTT
66 GAGAGCTGTTTCTCTCTT-GCTTCTTGGAAGAAATTCCAAACATGTCAAACATTTACGAGTTCTT
* * * * * ** * * *
15524319 TTATAACTTCGATTCCT-TAAAGTATTCCAGACGATCCCTTCCTTCGAGAAATTTTTCGAACATT
130 TTATAACATCGATTCCTGT-GAGTTTTCAAGACGATCCATTCCTTCGACCAATTTTT-AAAAAAT
* * * * *
15524383 CCATGCTTCGGG-TATCGCATTATTTGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTC
193 CCATG-ATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTATCATTGTGGAAACAACTTTTGGTC
* ** * * * *
15524447 TGTGAATTAAAAACTTATTTACGGGGGAGTTGTTTCTCTCTTTCTTCTTGGATGAAATT-TCGAA
257 TTTGAATTAAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGC-TCTTGGATTAACTTCT-GAA
* * * * * * *
15524511 CTCGTGAAACATGTACGAGTTCTTTTATAACATCGGTTCCCGTGAGTATTCAAGATGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTC
* * * * * *
15524576 CATCAACCAATTTTTCAT-ACATTCCATGATCGGGAAATCGCATCATATGGTCCT-AATAGTTTG
385 CTTCAACCAA-TTTTC-TGACATTCCATGCTCGGGAAATCGCATCATTTGAT-CTAAAAAGTTTT
* * * * *
15524639 TCATTTTGGAAACAACTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGCA-AAATGTTTATAT
447 TCATTTTGTAAACAACTTTTGGT-CTATAAATTAAAAACTTATTTACGTG-AGAATTG-CT-TCT
** * ** * * ** * *
15524702 CTT-GTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAACTTCGGTTCG
508 CTTGGTTCTTAAATGAACTTTCGAACCAGTGAAACATTTACAAGTTCTTTTATAACTTCGGTTCC
* * * * * *
15524766 TAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTT-TCGAACATTCCATGCTCGGGAAATC
573 TTAGAGTATTCAAGACGATCCATTCCATCGACCAATTTTCT-GAACATTCCATTCTTGGGAAGTC
15524830 GCATCAT
637 GCATCAT
* * **
15524837 TTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGAATTTGAATTAAAAACTTATTTACGT
1 TTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* *
15524902 GAGAGTTGTTTCTCTCTTGCTTCTTGGACA-AAATTCCAAACATGTCAAACATTTACAAGTTCTT
66 GAGAGCTGTTTCTCTCTTGCTTCTTGGA-AGAAATTCCAAACATGTCAAACATTTACGAGTTCTT
* * **
15524966 TTGTAACATCGATTCTTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAAAATCC
130 TTATAACATCGATTCCTGTGAGTTTTCAAGACGATCCATTCCTTCGACCAATTTTTAAAAAATCC
* * * *
15525030 ATGATCGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTT
195 ATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTATCATTGTGGAAACAACTTTTGGTCTTT
* * * *
15525095 GAATTAAAAACTTTTTTACGTAGGAATTGTTTCTCTCTTTG-TCCTAGATTAACTTCTGAACTTT
260 GAATTAAAAACTTATTTACGTAGGAATTGTTTCTCTC-TTGCTCTTGGATTAACTTCTGAACTTG
* *
15525159 TCAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTGCGAGTATTCAAGATGATCCATTCCTTC
324 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTC
* * * *
15525224 GACCAATTTT-TCGATCATTCTATGCTCGGGAAATCGCACCATTTGATCTGAAAAA--ATTTCAT
389 AACCAATTTTCT-GA-CATTCCATGCTCGGGAAATCGCATCATTTGATCT-AAAAAGTTTTTCAT
*
15525286 TCTGTAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGCTTCTCTTGGTTC
451 TTTGTAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGCTTCTCTTGGTTC
* **
15525351 TTAAATGAACTTTCGAACCAGTGAAACATTTACAAGTTCTTTAATAACTTCTATTCCTTAGAGTA
516 TTAAATGAACTTTCGAACCAGTGAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTAGAGTA
* * * **
15525416 TGCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCTCCGGAAGTCGCATCAT
581 TTCAAGACGATCCATTCCATCGACCAATTTTCTGAACATTCCATTCTTGGGAAGTCGCATCAT
* *
15525479 TTGGTCTAAAAGGTTTTTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
1 TTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* ** * * * * * * * * *
15525544 GAAAAATCTTTTTCTCTTGGTTCTTTGACA-AAATT-TAGAACTTGCCAAACTTTTACGAGATCT
66 GAGAGCTGTTTCTCTCTTGCTTCTTGGA-AGAAATTCCA-AACATGTCAAACATTTACGAGTTCT
* * * * ** * * *
15525607 TTTATAACTTCGATTCCT-TAAAGTATTCAAGACGATCCCTTCCTTCGAGAAATTTTTTGAATAT
129 TTTATAACATCGATTCCTGT-GAGTTTTCAAGACGATCCATTCCTTCGACCAA-TTTTTAAAAAA
* * * *
15525671 TCCATGCTTCGGG-TATCACATTATTTGGTCTAAAAAGTTTATCATT
192 TCCATG-ATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTATCATT
15525717 TACGAGGGAA
Statistics
Matches: 2870, Mismatches: 508, Indels: 153
0.81 0.14 0.04
Matches are distributed among these distances:
639 1 0.00
640 35 0.01
641 243 0.08
642 658 0.23
643 763 0.27
644 418 0.15
645 380 0.13
646 111 0.04
647 254 0.09
648 7 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (643 bp):
TTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
GAGAGCTGTTTCTCTCTTGCTTCTTGGAAGAAATTCCAAACATGTCAAACATTTACGAGTTCTTT
TATAACATCGATTCCTGTGAGTTTTCAAGACGATCCATTCCTTCGACCAATTTTTAAAAAATCCA
TGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTATCATTGTGGAAACAACTTTTGGTCTTTG
AATTAAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGCTCTTGGATTAACTTCTGAACTTGTC
AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCAA
CCAATTTTCTGACATTCCATGCTCGGGAAATCGCATCATTTGATCTAAAAAGTTTTTCATTTTGT
AAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGCTTCTCTTGGTTCTTAAA
TGAACTTTCGAACCAGTGAAACATTTACAAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAA
GACGATCCATTCCATCGACCAATTTTCTGAACATTCCATTCTTGGGAAGTCGCATCAT
Found at i:15522923 original size:429 final size:428
Alignment explanation
Indices: 15521582--15525717 Score: 4239
Period size: 429 Copynumber: 9.6 Consensus size: 428
15521572 TTCCTTTGGG
* * * * * *
15521582 CAATTTTCCGAACATTCCATGCTCGAGAAA-AGCAT-ACTTGGTCTAAATAGTTTGTCA-TTTGT
1 CAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGG
* *
15521644 AAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAATTGTCTCTCTCTTGGTTCTTG
65 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-AATTGTTTCTCTCTT-GTTCTTG
* * * * * * *
15521709 GACAAACTTACGAACTTGTCAAACATTTACGAGTTATTTTATGACTTCGATTCTTGAGAGTA-TC
128 GACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTC
* * *** * *
15521773 GAAGACGATCCATTCCATCGTCCAATATTCCAAACATTTCATGCTCGAGAAATCGCATCATTTTG
193 -AAGACGATCCATTCCTTCGACCAAT-TTTTGAACATTCCATGCTCGGGAAATCGCATCA-TTTG
* * * * * *
15521838 -TCT-AAAAGTTTTTCATTCTGTAAACAACTTTTGGTTTGTGAATTAAAAACATATTTATGTGGG
255 ATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAG
* * * * * * ** *
15521901 AATTGTTTATCTCTTGGTTCTTGGA-CAAGCTTTCGAACTTGTCAAACCTTTACAAGTTCTTTTA
320 AGTTGTTTCTCTCTTGCTTCTTGGATGAA-ATTCCGAACCAGTCAAACATTTACAAGTTCTTTTA
* * * * *
15521965 TAACTTTGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTTGAC
384 TAACATCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGAC
* * * * * * * * *
15522010 CAATTTTTTGAACATTCCATGCTTGGAAAATAGCA-CACTTGATCTAAAAAGTTTTTCATTTTGT
1 CAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGG
* * * **
15522074 AAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-TGGTTCTTAA
65 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-AATTGTTTCTCTCTTGTTCTTGG
** * * * * * * * *
15522138 ATAAACTTTCGAACCTGTGAAACATTTACAAGTTCTTTTATAACTTTGGATCCTGAGAGTATTCA
129 ACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCA
* * * * *
15522203 ATACGATCCAATCCTTCGACCAATTTTCTGAACATTCCATTCTTGAGG-AATCACATCATTTGGA
194 AGACGATCCATTCCTTCGACCAATTTT-TGAACATTCCATGCTCG-GGAAATCGCATCATTT-GA
* * * * * * *
15522267 -CTAAAAAGCTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTTAAAACTCATTTACTTGAGT
256 TCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGA
* * * * *
15522330 GCTGTTTCTCTCTTGCTTCCTAGAAGAAATTCCGAA-CATGTCAAACATTTACGAGTTCTTTTAT
321 GTTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCA-GTCAAACATTTACAAGTTCTTTTAT
** * * *
15522394 AACATCAATTCCTGT-GAGTTTTCAAGATGATTCATTCCTTCGAC
385 AACATCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGAC
* * * * *
15522438 CAATTTTT-AAAAAATCCATGATCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTGTGG
1 CAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGG
* * *
15522502 AAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAGAAATTGTTTCTCTCTTGCTCTTGG
65 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT-GAAATTGTTTCTCTCTTGTTCTTGG
** * *
15522567 ATTAAC-TTCTAAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTC
129 ACGAACTTTC-AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTC
* *
15522631 AAGACGATCCATTCCTTCGACCAATTTTCTGACCATTCCATGCTCGGGAAATCGCACCATTTGAT
193 AAGACGATCCATTCCTTCGACCAATTTT-TGAACATTCCATGCTCGGGAAATCGCATCATTTGAT
* * * *
15522696 CTAAAAAGTTTTTCATTCTGTAAACAACTTTTGGTCTATAAATAAAAAACTTATTTACGTGAGAA
257 CTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAG
* * ** * *
15522761 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAA
322 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCAGTCAAACATTTACAAGTTCTTTTATAA
* ** * *
15522824 CTTTTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGAT
387 CATCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGAC
* ** * * *
15522866 CAATTTTCCGAACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGT
1 CAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGG
* * *
15522931 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTTTCTCTTGGTTCTTT
65 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-AATTGTTTCTCTCTT-GTTCTTG
* * * * *
15522996 GACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTTTATAACTTCGATTCCTT-AAAGTATT
128 GACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTATT
* ** * *
15523060 TAAGACGAT-C---CCTTCGAGAAATTTTTTGAACGTTCCATGCTTGGGAAATCGCATCATTTGG
192 CAAGACGATCCATTCCTTCGACCAA-TTTTTGAACATTCCATGCTCGGGAAATCGCATCATTT-G
* * *
15523121 A-CTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTGTGAATT-AAAACTTATTTACGTGAG
255 ATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAG
** * *
15523184 AGTTGTTTCTCTCTTTTTTCTTGGATGAAATTCTGAACTC-GTCAAACATGTACAAGTTCTTTTA
320 AGTTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAAC-CAGTCAAACATTTACAAGTTCTTTTA
* * * *
15523248 TAACATCGGCTCCCGT-GAGTATTCAAGATGATCCATTCCTTCAAC
384 TAACATCGG-TTCCTTAGAGTATTCAAGACGATCCATTCCTTCGAC
* *
15523293 CAATTTTTC-ATACATTCCATGATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTG
1 CAATTTTTCGA-ACATTCCATGATCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTG
* * * * *
15523357 GAAAGAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTGCAAAATGTTTATATCTTGTTCTTG
64 GAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AAATTGTTTCTCTCTTGTTCTTG
* * * * * *
15523422 GACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTACAACTTCGGTTCCTAAGAGTATTC
128 GACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTC
* * * * *
15523487 AAGACTATCCATTCCTTAGACCAATTTTTTAAACATTCCATGCTAGGGAAATTGCATCATTTGGA
193 AAGACGATCCATTCCTTCGACCAA-TTTTTGAACATTCCATGCTCGGGAAATCGCATCATTT-GA
** *
15523552 -CTAAAAAGTTTGGCATTTTGTAAACAACTTTTGGACCT-TGAATTAAAAACTTATTTACGTGAG
256 TCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGG-TCTATGAATTAAAAACTTATTTACGTGAG
* * *
15523615 AGCTGTTTCTCTCTTGCTTCTTGGACGAAATTCC-AAACATGTCAAACATTTACAAGTTCTTTTA
320 AGTTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCA-GTCAAACATTTACAAGTTCTTTTA
*
15523679 TAACATCGGTTCC-TATGAGTTTTCAAGACGATCCATTCCTTCGAC
384 TAACATCGGTTCCTTA-GAGTATTCAAGACGATCCATTCCTTCGAC
* * * * * * * * *
15523724 CAATTTTTTGAA-AATCCACGATCGCGAAATCGCATTAGTTGGTCTAAAGAGTTTATCAATGTGG
1 CAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGG
* * * ** *
15523788 AAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAGGAATTGTTTCTCTCTTACTCTTCG
65 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT-GAAATTGTTTCTCTCTTGTTCTTGG
** * * * * * *
15523853 ATTAAC-TTCTAAACTTTTCAAATTTTTATGAGTTGTTCTATAACTTCGGTTCCTGAGAGTATTC
129 ACGAACTTTC-AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTC
* * * *
15523917 AAGACGATCCATTCCTTCAACCAATTTTTCAACCATTCCATGCTCAGGAAATCGCATCACTTGAT
193 AAGACGATCCATTCCTTCGACCAATTTTTGAA-CATTCCATGCTCGGGAAATCGCATCATTTGAT
* * *
15523982 CTAAAAA-TTTTTCATTTTGTAAACAATTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAA
257 CTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAG
* * ** * * * *
15524046 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCTAACTAGTGAAACATTTACAAGTTCTTTTATAA
322 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCAGTCAAACATTTACAAGTTCTTTTATAA
* * * *
15524109 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGAT
387 CATCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGAC
** *
15524151 CAATTTTTCGAACATTCCATTCTC-TGAAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTG
1 CAATTTTTCGAACATTCCATGATCGGGAAA-TCGCATCATTTGGTCTAAAA-GTTTGTCATTTTG
* * *
15524215 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTTTCTCTTAGTTCTT
64 GAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-AATTGTTTCTCTCTT-GTTCTT
* * * * * *
15524280 TGACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTTTATAACTTCGATTCCTT-AAAGTAT
127 GGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTAT
* * ** * *
15524344 TCCAGACGATCCCTTCCTTCGAGAAATTTTTCGAACATTCCATGCTTCGGG-TATCGCATTATTT
191 TCAAGACGATCCATTCCTTCGACCAATTTTT-GAACATTCCATGC-TCGGGAAATCGCATCATTT
* * * * * *
15524408 GGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTGTGAATTAAAAACTTATTTACGGGG
254 GATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGA
* * * * *
15524473 GAGTTGTTTCTCTCTTTCTTCTTGGATGAAATTTCGAACTC-GTGAAACATGTACGAGTTCTTTT
319 GAGTTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAAC-CAGTCAAACATTTACAAGTTCTTTT
* * * *
15524537 ATAACATCGGTTCCCGT-GAGTATTCAAGATGATCCATTCCATCAAC
383 ATAACATCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGAC
* *
15524583 CAATTTTTC-ATACATTCCATGATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTG
1 CAATTTTTCGA-ACATTCCATGATCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTG
* * * *
15524647 GAAACAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTGCAAAATGTTTATATCTTGTTCTTG
64 GAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AAATTGTTTCTCTCTTGTTCTTG
* * * * * *
15524712 GACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAACTTCGGTTCGTAAGAGTATTC
128 GACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTC
*
15524777 AAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGA
193 AAGACGATCCATTCCTTCGACCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTT-GA
** *
15524842 -CTAAAAA-TTTTGTCATTTTGTAAACAACTTTTGGAATTTGAATTAAAAACTTATTTACGTGAG
256 TCTAAAAAGTTTT-TCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAG
** * *
15524905 AGTTGTTTCTCTCTTGCTTCTTGGACAAAATTCC-AAACATGTCAAACATTTACAAGTTCTTTTG
320 AGTTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCA-GTCAAACATTTACAAGTTCTTTTA
* * *
15524969 TAACATCGATT-CTTGTGAGTTTTCAAGACGATCCA-TCCTTCGAC
384 TAACATCGGTTCCTT-AGAGTATTCAAGACGATCCATTCCTTCGAC
* * * * *
15525013 CAATTTTTCGAA-AATCCATGATCGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGG
1 CAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGG
* * * * *
15525077 AAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAGGAATTGTTTCTCTCTT-TGTCCTA
65 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT-GAAATTGTTTCTCTCTTGT-TCTTG
** * * * * *
15525141 GATTAAC-TTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTGCGAGTATT
128 GACGAACTTTC-AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATT
* * * *
15525205 CAAGATGATCCATTCCTTCGACCAATTTTTCGATCATTCTATGCTCGGGAAATCGCACCATTTGA
192 CAAGACGATCCATTCCTTCGACCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTTGA
* * *
15525270 TCTGAAAAA--ATTTCATTCTGTAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAG
256 TCT-AAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAG
* * * ** * * * *
15525333 AATTG-CT-TCTCTTGGTTCTTAAATGAACTTTCGAACCAGTGAAACATTTACAAGTTCTTTAAT
320 AGTTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCAGTCAAACATTTACAAGTTCTTTTAT
* ** * * *
15525396 AACTTCTATTCCTTAGAGTATGCAAGACGATCCATTCCATCGAT
385 AACATCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGAC
* ** * * * *
15525440 CAATTTTCCGAACATTCCATTCTCCGGAAGTCGCATCATTTGGTCTAAAAGGTTTTTCATTTTGT
1 CAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGG
* * * *
15525505 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAAATCTTTTTCTCTTGGTTCTTT
65 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AAATTGTTTCTCTCTT-GTTCTTG
* * * * * *
15525570 GACAAAATTT-AGAACTTGCCAAACTTTTACGAGATCTTTTATAACTTCGATTCCTT-AAAGTAT
128 GACGAACTTTCA-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTAT
* ** * * * *
15525633 TCAAGACGATCCCTTCCTTCGAGAAATTTTTTGAATATTCCATGCTTCGGG-TATCACATTATTT
191 TCAAGACGATCCATTCCTTCGACCAA-TTTTTGAACATTCCATGC-TCGGGAAATCGCATCATTT
* *
15525697 GGTCTAAAAAGTTTATCATTT
254 GATCTAAAAAGTTTTTCATTT
15525718 ACGAGGGAAT
Statistics
Matches: 3076, Mismatches: 526, Indels: 210
0.81 0.14 0.06
Matches are distributed among these distances:
425 24 0.01
426 207 0.07
427 333 0.11
428 674 0.22
429 724 0.24
430 562 0.18
431 362 0.12
432 177 0.06
433 13 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (428 bp):
CAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGGA
AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAATTGTTTCTCTCTTGTTCTTGGAC
GAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAG
ACGATCCATTCCTTCGACCAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGATCTAA
AAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGT
TTCTCTCTTGCTTCTTGGATGAAATTCCGAACCAGTCAAACATTTACAAGTTCTTTTATAACATC
GGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGAC
Found at i:15526120 original size:215 final size:214
Alignment explanation
Indices: 15525728--15528254 Score: 2431
Period size: 215 Copynumber: 11.8 Consensus size: 214
15525718 ACGAGGGAAT
* * * * *
15525728 TGTTTCTCTCTTTTTTCTTGGATGAAATTTCGAACTCGTTAAACATGTACGAGTTCTTTTATAAC
1 TGTTTCTCTC-TTGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * *** * * * * *
15525793 ATGGGTTCCCGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTCAAACATTCCATGATC
65 TTCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * *
15525858 GGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAATT
130 GGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15525922 AAAAACTTATTTACGTGCAAAA
194 AAAAACTTATTTACGTG-AAAA
* * * * * *
15525944 TGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAACT
1 TGTTTCTCTCTTGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
* * *
15526009 TCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTCG
66 TCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCG
* * *
15526074 GGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTAA
131 GGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
**
15526139 AAACTTATTTACGTGAGAGT
196 AAACTTATTTACGTGA-AAA
* * * * * *
15526159 TGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAAC
1 TGTTTCTCTCTTG-TTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* ** * * * *
15526224 ATCGATTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTTGAA-AATCCATGATC
65 TTCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * * * * *
15526287 GCGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * *
15526352 AAAACTTTTTTACGTAGGAAT
195 AAAACTTATTTACGT-GAAAA
* * ** * * **
15526373 TGTTTCTCTCTT-TGTCCTAGA-TTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TGTTTCTCTCTTGT-TCTTGGACGAAATTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAA
* ** * * *
15526436 CTTCGGTTCCTGCGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGATCATTCTATGCT
64 CTTCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * *
15526501 CGGGAAATCGCACCATTTGATCTGAAAAA-ATT-TCATTCTGTAAACAACTTTTGGTCTATAAAT
129 CGGGAAATCGCATCATTTGGTCT-AAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15526564 TAAAAACTTATTTACGTGAGAAT
193 TAAAAACTTATTTACGTGA-AAA
* * ** * * * ** * *
15526587 TGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAACT
1 TGTTTCTCTCTTGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
* * * * * * *
15526651 TCTATTCCTTAGAGTATGCAAGACGATCCATTCCATCGA-CAATTTTCCGAACATTCCATTCTCT
66 TCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCG
* *
15526715 GGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
131 GGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
15526780 AAACTTATTTACGTGAAAAA
196 AAACTTATTTACGTG-AAAA
* * * * * *
15526800 TCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAACTTTTACGAGATCTTTTATAAC
1 TGTTTCTCTCTT-GTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * ** * *
15526865 TTCGATTCCTTAA-AGTATTCAAGACGATCCCTTTCTTCGAGAAATTTTTTGAATATTCCATGCT
65 TTCGATTCC-TAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* * * * * *
15526929 TCGGG-TATCACATTATTTGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTGTGAAT
128 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * **
15526993 TAAAAACTTACTTACGGGGGAGT
193 TAAAAACTTATTTAC-GTGAAAA
* * * * * *
15527016 TGTTTCTCTCTTTCTTCTTGGATGAAATTCCGAACTCGTGAAACATGTACGAGTTCTTTTATAAC
1 TGTTTCTCTC-TTGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * *** * * * *
15527081 ATCGGTTCCCGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATGAT
65 TTCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGCT
* * * *
15527145 CGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAAT
129 CGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
15527209 TAAAAACTTATTTACGTGCAAAA
193 TAAAAACTTATTTACGTG-AAAA
* * * * * *
15527232 TGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAACT
1 TGTTTCTCTCTTGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
* * * *
15527297 TCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTTGAACATTCCATGCTCG
66 TCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCG
* * *
15527362 GGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTAA
131 GGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* **
15527427 AAACTTATTTACATGAGAGT
196 AAACTTATTTACGTGA-AAA
* * * * * *
15527447 TGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAAC
1 TGTTTCTCTCTTG-TTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* ** * * *
15527512 ATCGATTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGATC
65 TTCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * * * * * *
15527575 -GGAAATCACATTAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
** * * *
15527639 AAATTTTTTTTACGTAGGAAT
195 AAAACTTATTTACGT-GAAAA
* * ** * * **
15527660 TGTTTCTCTCTT-TGTCCTAGA-TTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TGTTTCTCTCTTGT-TCTTGGACGAAATTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAA
* ** * * *
15527723 CTTCGGTTCCTGCGAGTATTCAAGATGATCCATTCCATT-GACCAATTTTTCGATCATTCTATGC
64 CTTCGATTCCTAAGAGTATTCAAGACGATCCATTCC-TTCGACCAATTTTTCGAACATTCCATGC
* * * * * *
15527787 TCGGGAAATCGCACCATTTGATCTGAAAAA-ATT-T-ATTCTGTAAACAACTTTTGGTCTATAAA
128 TCGGGAAATCGCATCATTTGGTCT-AAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15527849 TTAAAAACTTATTTACGTGAGAAT
192 TTAAAAACTTATTTACGTGA-AAA
* * ** * * * ** * * *
15527873 TGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTAATAACT
1 TGTTTCTCTCTTGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
* * * * * * *
15527937 TCTATTCCTTAGAGTATGCAAGACGATCCATTCCATCGATCAATTTTTCGAACATTCCATTCTCC
66 TCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCG
* *
15528002 GGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
131 GGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
15528067 AAACTTATTTACGTGAAAAA
196 AAACTTATTTACGTG-AAAA
* * * * * *
15528087 TCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAACTTTTACGAGATCTTTTATAAC
1 TGTTTCTCTCTT-GTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* ** * *
15528152 TTCGATTCCTTAA-AGTATTCAAGACGATCCCTTCCTTCGAGAAATTTTTTGAATATTCCATGCT
65 TTCGATTCC-TAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* * * * *
15528216 TCAGG-TATCACATTATTTGGTCTAAAAAGTTTATCATTT
128 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
15528255 ACGAGGGAAT
Statistics
Matches: 1852, Mismatches: 408, Indels: 102
0.78 0.17 0.04
Matches are distributed among these distances:
211 14 0.01
212 208 0.11
213 326 0.18
214 247 0.13
215 525 0.28
216 516 0.28
217 16 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (214 bp):
TGTTTCTCTCTTGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
TCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCG
GGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
AAACTTATTTACGTGAAAA
Found at i:15526884 original size:428 final size:427
Alignment explanation
Indices: 15525727--15528215 Score: 2740
Period size: 428 Copynumber: 5.8 Consensus size: 427
15525717 TACGAGGGAA
** * * * *
15525727 TTGTTTCTCTCTTTTTTCTTGGATGAAATTTCGAACTC-GTTAAACATGTACGAGTTCTTTTATA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAAC-CAGTGAAACATTTACAAGTTCTTTTATA
* * * * * *
15525791 ACATGGGTTCCCGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTCAAACATTCCATGA
65 ACATCGATT-CCTTGAGTATTCAAGACGATCCATTCCATCGACCAATTTTTCGAACATTCCATGA
* * *
15525856 TCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAAT
129 TC-GGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAAT
* * * * *
15525921 TAAAAACTTATTTACGTGCAAAATGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAA
192 TAAAAACTTATTTACGTGAAAAAT-TTTTTCTCTTGTTCTTAGACGAAATTTCGAACTTGTCAAA
* * * * *
15525986 CCTTTATGAGTTCTTTCATAACTTCGGTT-CGTAAGAGTATTCAAGACGATCCATTCCTTAGACC
256 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGACC
*
15526050 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGA-CTAAAAATTTTGTCATTTTGT
320 AATTTTTCGATCATTCCATGCTCGGGAAATCGCATCATTT-GATCTAAAAATTTTGTCATTTTGT
* *
15526114 AAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAG
384 AAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAG
** * * *
15526158 TTGTTTCTCTCTTGCTTCTTGGACAAAATTCC-AAACATGTCAAACATTTACAAGTTCTTTTGTA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCA-GTGAAACATTTACAAGTTCTTTTATA
* * * *
15526222 ACATCGATTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTTGAA-AATCCATGA
65 ACATCGATTCCT-TGAGTATTCAAGACGATCCATTCCATCGACCAATTTTTCGAACATTCCATGA
* * * * *
15526285 TCGCGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAAT
129 TCG-GAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAAT
* ** * ** * *
15526350 TAAAAACTTTTTTACGT-AGGAATTGTTTCTCTCTT-TGTCCTAGA-TTAACTTCTGAACTTTTC
192 TAAAAACTTATTTACGTGAAAAATT-TTT-TCTCTTGT-TCTTAGACGAAATTTC-GAACTTGTC
* *** *
15526412 AAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTGCGAGTATTCAAGATGATCCATTCCTTCGA
253 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * *
15526477 CCAATTTTTCGATCATTCTATGCTCGGGAAATCGCACCATTTGATCTGAAAAA-ATT-TCATTCT
318 CCAATTTTTCGATCATTCCATGCTCGGGAAATCGCATCATTTGATCT-AAAAATTTTGTCATTTT
* *
15526540 GTAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAA
382 GTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAG
* * ** *
15526586 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAA
* * * * **
15526649 CTTCTATTCCTTAGAGTATGCAAGACGATCCATTCCATCGA-CAATTTTCCGAACATTCCATTCT
66 CATCGATTCCTT-GAGTATTCAAGACGATCCATTCCATCGACCAATTTTTCGAACATTCCATGAT
* *
15526713 CTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
130 C-GGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATT
* *
15526778 AAAAACTTATTTACGTGAAAAATCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAA
193 AAAAACTTATTTACGTGAAAAAT-TTTTTCTCTT-GTTCTTAGACGAAATTTCGAACTTGTCAAA
* * * * **
15526843 CTTTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCCTTTCTTCGAGAA
256 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACCA
* * * * * * * *
15526908 ATTTTTTGAAT-ATTCCATGCTTCGGG-TATCACATTATTTGGTCTAAAAAGTTTATCATTTTGC
321 ATTTTTCG-ATCATTCCATGC-TCGGGAAATCGCATCATTTGATCTAAAAATTTTGTCATTTTGT
* * * *
15526971 AAACAACTTTTGGTCTGTGAATTAAAAACTTACTTACGGGGGAG
384 AAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAG
* * *
15527015 TTGTTTCTCTCTTTCTTCTTGGATGAAATTCCGAACTC-GTGAAACATGTACGAGTTCTTTTATA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAAC-CAGTGAAACATTTACAAGTTCTTTTATA
* * * *
15527079 ACATCGGTTCCCGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATG
65 ACATCGATT-CCTTGAGTATTCAAGACGATCCATTCCATCGACCAATTTTTCGA-ACATTCCATG
* * *
15527143 ATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAA
128 ATC-GGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAA
* * * * *
15527208 TTAAAAACTTATTTACGTGCAAAATGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAA
191 TTAAAAACTTATTTACGTGAAAAAT-TTTTTCTCTTGTTCTTAGACGAAATTTCGAACTTGTCAA
* * * * *
15527273 ACCTTTATGAGTTCTTTCATAACTTCGGTT-CGTAAGAGTATTCAAGACGATCCATTCCTTAGAC
255 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAC
* *
15527337 CAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGA-CTAAAAATTTTGTCATTTTG
319 CAATTTTTCGATCATTCCATGCTCGGGAAATCGCATCATTT-GATCTAAAAATTTTGTCATTTTG
* * *
15527401 TAAACAACTTTTGGACTTTGAATTAAAAACTTATTTACATGAGAG
383 TAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAG
** * * *
15527446 TTGTTTCTCTCTTGCTTCTTGGACAAAATTCC-AAACATGTCAAACATTTACAAGTTCTTTTGTA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCA-GTGAAACATTTACAAGTTCTTTTATA
* * *
15527510 ACATCGATTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGA
65 ACATCGATTCCT-TGAGTATTCAAGACGATCCATTCCATCGACCAATTTTTCGAACATTCCATGA
* * * * * * *
15527573 TCGGAAATCACATTAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATT
129 TCGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATT
** * ** * ** * *
15527638 AAAATTTTTTTTACGT-AGGAATTGTTTCTCTCTT-TGTCCTAGA-TTAACTTCTGAACTTTTCA
193 AAAAACTTATTTACGTGAAAAATT-TTT-TCTCTTGT-TCTTAGACGAAATTTC-GAACTTGTCA
* *** *
15527700 AATTTTTACGAGTTCTTTTATAACTTCGGTTCCTGCGAGTATTCAAGATGATCCATTCCATT-GA
254 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGA
* * * *
15527764 CCAATTTTTCGATCATTCTATGCTCGGGAAATCGCACCATTTGATCTGAAAAA-ATT-T-ATTCT
318 CCAATTTTTCGATCATTCCATGCTCGGGAAATCGCATCATTTGATCT-AAAAATTTTGTCATTTT
* *
15527826 GTAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAA
382 GTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAG
* * ** * *
15527872 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTAATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAA
* * * * **
15527935 CTTCTATTCCTTAGAGTATGCAAGACGATCCATTCCATCGATCAATTTTTCGAACATTCCATTCT
66 CATCGATTCCTT-GAGTATTCAAGACGATCCATTCCATCGACCAATTTTTCGAACATTCCATGAT
* *
15528000 CCGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
130 -CGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATT
* *
15528065 AAAAACTTATTTACGTGAAAAATCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAA
193 AAAAACTTATTTACGTGAAAAAT-TTTTTCTCTT-GTTCTTAGACGAAATTTCGAACTTGTCAAA
* * * **
15528130 CTTTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAGAA
256 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACCA
*
15528195 ATTTTTTGAAT-ATTCCATGCT
321 ATTTTTCG-ATCATTCCATGCT
15528216 TCAGGTATCA
Statistics
Matches: 1701, Mismatches: 293, Indels: 131
0.80 0.14 0.06
Matches are distributed among these distances:
423 1 0.00
424 69 0.04
425 25 0.01
426 138 0.08
427 191 0.11
428 437 0.26
429 279 0.16
430 59 0.03
431 391 0.23
432 106 0.06
433 5 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (427 bp):
TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAA
CATCGATTCCTTGAGTATTCAAGACGATCCATTCCATCGACCAATTTTTCGAACATTCCATGATC
GGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAA
AACTTATTTACGTGAAAAATTTTTTCTCTTGTTCTTAGACGAAATTTCGAACTTGTCAAACTTTT
ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTT
TCGATCATTCCATGCTCGGGAAATCGCATCATTTGATCTAAAAATTTTGTCATTTTGTAAACAAC
TTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAG
Found at i:15526984 original size:216 final size:215
Alignment explanation
Indices: 15525728--15528254 Score: 2378
Period size: 216 Copynumber: 11.8 Consensus size: 215
15525718 ACGAGGGAAT
* ** * * * *
15525728 TGTTTCTCTCTTTTTTCTTGGATGAAATTTCGAACTCGTTAAACATGTACGAGTTCTTTTATAAC
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * * * * * *
15525793 ATGGGTTCCCGT-GAGTATTCAAGATGATCCATTCCATCAACCAATTTTTCAAACATTCCATGAT
66 TTCGATT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * *
15525857 CGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAAT
130 CGGG-AATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15525921 TAAAAACTTATTTACGTGCAAAA
193 TAAAAACTTATTTACGTGAAAAA
* * * * * *
15525944 TGTTTATATCTT-GTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAAC
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * *
15526008 TTCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGATTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15526073 GGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
131 GGG-AATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* **
15526138 AAAACTTATTTACGTGAGAGT
195 AAAACTTATTTACGTGAAAAA
* * * * * * * *
15526159 TGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAAC
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * *
15526224 ATCGATTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTTGAA-AATCCATGAT
66 TTCGATTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * * *
15526286 CGCGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATT
130 CG-GGAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
15526351 AAAAACTTTTTTACGT-AGGAAT
194 AAAAACTTATTTACGTGA-AAAA
* * * * ** * * **
15526373 TGTTTCTCTCTTTG-TCCTAGA-TTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAA
* ** * * *
15526436 CTTCGGTTCCTGCGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGATCATTCTATGCT
65 CTTCGATTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * *
15526501 CGGGAAATCGCACCATTTGATCTGAAAAA-ATT-TCATTCTGTAAACAACTTTTGGTCTATAAAT
130 CGGG-AATCGCATCATTTGGTCT-AAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15526564 TAAAAACTTATTTACGTG-AGAA
193 TAAAAACTTATTTACGTGAAAAA
** ** * * * ** * *
15526586 T-TGCTTCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAAC
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * *
15526650 TTCTATTCCTTAGAGTATGCAAGACGATCCATTCCATCGA-CAATTTTCCGAACATTCCATTCTC
66 TTCGATTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15526714 TGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
131 GGGAA-TCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15526779 AAAACTTATTTACGTGAAAAA
195 AAAACTTATTTACGTGAAAAA
* * * * *
15526800 TCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAACTTTTACGAGATCTTTTATAAC
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * ** * *
15526865 TTCGATTCCTTAAAGTATTCAAGACGATCCCTTTCTTCGAGAAATTTTTTGAATATTCCATGCTT
66 TTCGATTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-T
* * * * * *
15526930 CGGGTATCACATTATTTGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTGTGAATTA
130 CGGGAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * ** **
15526995 AAAACTTACTTACGGGGGAGT
195 AAAACTTATTTACGTGAAAAA
* ** * * * * *
15527016 TGTTTCTCTCTTTCTTCTTGGATGAAATTCCGAACTCGTGAAACATGTACGAGTTCTTTTATAAC
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * * * *
15527081 ATCGGTTCCCGT-GAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATGA
66 TTCGATT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGC
* * * *
15527144 TCGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAA
129 TCGGG-AATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15527208 TTAAAAACTTATTTACGTGCAAAA
192 TTAAAAACTTATTTACGTGAAAAA
* * * * * *
15527232 TGTTTATATCTT-GTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAAC
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * *
15527296 TTCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTTGAACATTCCATGCTC
66 TTCGATTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15527361 GGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
131 GGG-AATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * **
15527426 AAAACTTATTTACATGAGAGT
195 AAAACTTATTTACGTGAAAAA
* * * * * * * *
15527447 TGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAAC
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * *
15527512 ATCGATTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
66 TTCGATTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * * * * *
15527574 CGGAAATCACATTAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATTA
130 CGGGAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
** * * *
15527639 AAATTTTTTTTACGT-AGGAAT
195 AAAACTTATTTACGTGA-AAAA
* * * * ** * * **
15527660 TGTTTCTCTCTTTG-TCCTAGA-TTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAA
* ** * * *
15527723 CTTCGGTTCCTGCGAGTATTCAAGATGATCCATTCCATT-GACCAATTTTTCGATCATTCTATGC
65 CTTCGATTCCTTAGAGTATTCAAGACGATCCATTCC-TTCGACCAATTTTTCGAACATTCCATGC
* * * * * *
15527787 TCGGGAAATCGCACCATTTGATCTGAAAAA-ATT-T-ATTCTGTAAACAACTTTTGGTCTATAAA
129 TCGGG-AATCGCATCATTTGGTCT-AAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15527849 TTAAAAACTTATTTACGTG-AGAA
192 TTAAAAACTTATTTACGTGAAAAA
** ** * * * ** * * *
15527872 T-TGCTTCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTAATAAC
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * *
15527936 TTCTATTCCTTAGAGTATGCAAGACGATCCATTCCATCGATCAATTTTTCGAACATTCCATTCTC
66 TTCGATTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15528001 CGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
131 GGGAA-TCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15528066 AAAACTTATTTACGTGAAAAA
195 AAAACTTATTTACGTGAAAAA
* * * * *
15528087 TCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAACTTTTACGAGATCTTTTATAAC
1 TGTTTTTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * ** * *
15528152 TTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAGAAATTTTTTGAATATTCCATGCTT
66 TTCGATTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-T
* * * * *
15528217 CAGGTATCACATTATTTGGTCTAAAAAGTTTATCATTT
130 CGGGAATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
15528255 ACGAGGGAAT
Statistics
Matches: 1845, Mismatches: 416, Indels: 100
0.78 0.18 0.04
Matches are distributed among these distances:
211 25 0.01
212 211 0.11
213 304 0.16
214 232 0.13
215 524 0.28
216 534 0.29
217 15 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (215 bp):
TGTTTTTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
TTCGATTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
GGGAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
AAACTTATTTACGTGAAAAA
Found at i:15528655 original size:215 final size:214
Alignment explanation
Indices: 15528265--15529500 Score: 1237
Period size: 215 Copynumber: 5.8 Consensus size: 214
15528255 ACGAGGGAAT
* * * * *
15528265 TGTTTCTCTCTT-TTCTTGGATGAAATTTCGAACTCGTTAAACATGTACGAGTTCTTTTATAACA
1 TGTTTCTCTCTTGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
* * * * * *
15528329 TGGGTTCCCGT-GAGTATTCAAGATGATCCATTCCATCAACCAATTTTTCAAACATTCCATGATC
66 TCGGTT-CCGTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * *
15528393 GGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAATT
130 GGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15528457 AAAAACTTATTTACGTGCAAAA
194 AAAAACTTATTTACGTG-AAAA
* * * * * *
15528479 TGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAACT
1 TGTTTCTCTCTTGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
*
15528544 TCGGTT-CGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TCGGTTCCGT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15528608 GGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
**
15528673 AAAACTTATTTACGTGAGAGT
195 AAAACTTATTTACGTGA-AAA
* * * * * * *
15528694 TGTTTCTGTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAAC
1 TGTTTCTCTCTTG-TTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * *
15528759 ATCGATTCCCGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-A-TCCATGAT
65 TTCGGTT-CCGTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * * *
15528820 CGCGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
15528885 AAAAACTTTTTTACGTAGGAAT
194 AAAAACTTATTTACGT-GAAAA
* * ** * * **
15528907 TGTTTCTCTCTT-TGTCCTAGA-TTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TGTTTCTCTCTTGT-TCTTGGACGAAATTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15528970 CTTCGGTTCC-TGCGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGATCATTCTATGC
64 CTTCGGTTCCGT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * * * *
15529034 TCGGGAAATCGCACCATTTGATCTGAAAAA-ATT-TCATTCTGTAAACAACTTTTGGTCTAT-AA
128 TCGGGAAATCGCATCATTTGGTCT-AAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
15529096 TTAAAAACTTATTTATGTGAGAAT
192 TTAAAAACTTATTTACGTGA-AAA
* * ** * * * ** * * *
15529120 TGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAACT
1 TGTTTCTCTCTTGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
** * * * * * *
15529184 TTTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCTCT
66 TCGGTTCCGTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCG
* *
15529249 GGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
131 GGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
15529314 AAACTTATTTACGTGAAAAA
196 AAACTTATTTACGTG-AAAA
* * * * * * *
15529334 TCTTTTTTTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAACTTTTACGAGATCTTTTATAAC
1 TGTTTCTCTCTT-GTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * ** *
15529399 TTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAGAAATTTTT-GAATATTCCATGCTT
65 TTCGGTTCCGTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-T
* * * *
15529463 CGGG-TATCACATTATTTGGTCTAAAAAGTTTATCATTT
129 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
15529501 ACGAGGGAAT
Statistics
Matches: 828, Mismatches: 166, Indels: 55
0.79 0.16 0.05
Matches are distributed among these distances:
210 1 0.00
211 11 0.01
212 160 0.19
213 171 0.21
214 65 0.08
215 266 0.32
216 151 0.18
218 3 0.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (214 bp):
TGTTTCTCTCTTGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
TCGGTTCCGTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCG
GGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
AAACTTATTTACGTGAAAA
Found at i:15529384 original size:428 final size:427
Alignment explanation
Indices: 15528316--15529466 Score: 1326
Period size: 428 Copynumber: 2.7 Consensus size: 427
15528306 CATGTACGAG
* * * * *
15528316 TTCTTTTATAACATGGGTTCCCGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTCAAA
1 TTCTTTTATAACATCGATTCCCGTGAGTATTCAAGACGATCCATTCCATCGACCAATTTTTCGAA
* *
15528381 CATTCCATGATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAACTTTTG
66 CATTCCATGATC-GGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGGAAACAACTTTTG
* * * * *
15528446 GTCCTTGAATTAAAAACTTATTTACGTGCAAAATGTTTATATCTTGTTCTTGGACGAACTTTCGA
129 GTCTTTGAATTAAAAACTTATTTACGTGAAAAAT-TTTTTATCTTGTTCTTAGACGAAATTTCGA
* * * *
15528511 ACTTGTCAAACCTTTATGAGTTCTTTCATAACTTCGGTTCGTAAGAGTATTCAAGACGATCCATT
193 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCCATT
* * *
15528576 CCTTAGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAATTTTGT
258 CCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCACCATTTGGACTAAAAATATTGT
* * * *
15528641 CATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTGTCTT
323 CATTCTGTAAACAACTTTTGGACTATGAATTAAAAACTTATTTACGTGAGAATTGCTTC-GTCTT
** *
15528706 GCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAG
387 GCTTCTTAAACAAAATTCCAAACATGTCAAACATTTACAAC
* * *
15528747 TTCTTTTGTAACATCGATTCCCGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA
1 TTCTTTTATAACATCGATTCCCGTGAGTATTCAAGACGATCCATTCCATCGACCAATTTTTCGAA
* * * * *
15528811 -A-TCCATGATCGCGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTG
66 CATTCCATGATCG-GAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGGAAACAACTTTTG
* ** * * ** *
15528874 GTCTTTGAATTAAAAACTTTTTTACGT-AGGAATTGTTTCTCTCTT-TGTCCTAGA-TTAACTTC
129 GTCTTTGAATTAAAAACTTATTTACGTGAAAAATT-TTT-TATCTTGT-TCTTAGACGAAATTTC
* * ** *
15528936 TGAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTGCGAGTATTCAAGATGATCC
191 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCC
* *
15529001 ATTCCTTCGACCAATTTTTCGATCATTCTATGCTCGGGAAATCGCACCATTT-GATCTGAAAAA-
255 ATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCACCATTTGGA-CT-AAAAAT
* *
15529064 ATT-TCATTCTGTAAACAACTTTTGGTCTAT-AATTAAAAACTTATTTATGTGAGAATTGCTTC-
318 ATTGTCATTCTGTAAACAACTTTTGGACTATGAATTAAAAACTTATTTACGTGAGAATTGCTTCG
* ** * * *
15529126 TCTTGGTTCTTAAATGAACTTCCGAACCA-GTGAAACATTTACAAC
383 TCTTGCTTCTTAAACAAAATTCC-AAACATGTCAAACATTTACAAC
* * * * *
15529171 TTCTTTTATAACTTTTG-TT-CCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCG
1 TTCTTTTATAAC-ATCGATTCCCGT-GAGTATTCAAGACGATCCATTCCATCGACCAATTTTTCG
** * *
15529234 AACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTT
64 AACATTCCATGATC-GGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGGAAACAACTTT
* *
15529299 TGGTCTTTGAATTAAAAACTTATTTACGTGAAAAATCTTTTTTTCTTGGTTCTTTGACGAAATTT
127 TGGTCTTTGAATTAAAAACTTATTTACGTGAAAAAT-TTTTTATCTT-GTTCTTAGACGAAATTT
* * *
15529364 CGAACTTGCCAAACTTTTACGAGATCTTTTATAACTTCGATTCCTTAA-AGTATTCAAGACGATC
190 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TAAGAGTATTCAAGACGATC
* ** *
15529428 CCTTCCTTCGAGAAATTTTT-GAATATTCCATGCTTCGGG
254 CATTCCTTCGACCAATTTTTCGAACATTCCATGC-TCGGG
15529467 TATCACATTA
Statistics
Matches: 600, Mismatches: 97, Indels: 49
0.80 0.13 0.07
Matches are distributed among these distances:
423 3 0.00
424 62 0.10
425 24 0.04
426 32 0.05
427 131 0.22
428 278 0.46
429 14 0.02
430 18 0.03
431 38 0.06
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (427 bp):
TTCTTTTATAACATCGATTCCCGTGAGTATTCAAGACGATCCATTCCATCGACCAATTTTTCGAA
CATTCCATGATCGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGGAAACAACTTTTGGT
CTTTGAATTAAAAACTTATTTACGTGAAAAATTTTTTATCTTGTTCTTAGACGAAATTTCGAACT
TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCT
TCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCACCATTTGGACTAAAAATATTGTCAT
TCTGTAAACAACTTTTGGACTATGAATTAAAAACTTATTTACGTGAGAATTGCTTCGTCTTGCTT
CTTAAACAAAATTCCAAACATGTCAAACATTTACAAC
Found at i:15530783 original size:427 final size:428
Alignment explanation
Indices: 15529682--15531963 Score: 2530
Period size: 427 Copynumber: 5.3 Consensus size: 428
15529672 ATTTTGGAAC
* * * * *
15529682 AAATTTTGAACTTGTCAAACCTTTATGAGTTCTTTCATAACTTCGGTT-CGTAAGAGTATTCAAG
1 AAATTTCGAACTTGTCAAATCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAG
* *
15529746 ACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTA
65 ACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
* * * *
15529811 AAAATTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAGTTGT
130 AAAAGTTATCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGT
* * * *
15529876 TTCTGTCTTGCTTCTTGGACGAAATTCCAAACAT-GTCAAACATTTACAAGTTCTTTTGTAACAT
195 TTCTCTCTTGCTTCTTGGATGAAATTCCGAAC-TCGTCAAACATTTACAAGTTCTTTTATAACAT
* * * *
15529940 CGATTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTT-TGAA-AATCCATGATCGG
259 CGATTCCT-TGAGTATTCAAGACGATCCATTCCATCGACCAATTTTCCGAACATTCCATGATCGG
* * * * *
15530002 GAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATTAAA
323 GAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGGAAA-CACTTTTGGTCTTTGAATTAAA
* * * * *
15530067 AACTTTTTTACGT-AGGAATTGTTTCTCTCTTTGCTCCTAGA-T
386 AACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTAGACG
* * * * ***
15530109 TAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTGCGAGTATTCAAG
1 AAATTTC-GAACTTGTCAAATCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
* * ** * * *
15530174 ATGATCCATTCCTTCGACCAATTTTTCGACCATTTTATGCTCGGGAAATCGTACCATTTGATCTA
65 ACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
* * *
15530239 AAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTG
130 AAAAG-TTATCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTG
* * ** * * * *
15530304 -CT-TCTCTTG-GTCTTAAATGAACTTTCGAAC-CAGTGAAACATTTACAAGTTCTTTTATAACT
194 TTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTC-GTCAAACATTTACAAGTTCTTTTATAACA
* * ** *
15530365 TCTATTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCTCT
258 TCGATTCCTT-GAGTATTCAAGACGATCCATTCCATCGACCAATTTTCCGAACATTCCATGATCG
* *
15530430 GGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACACTTTTGGTCTTTGAATTAAA
322 GGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGGAAACACTTTTGGTCTTTGAATTAAA
* * *
15530495 AACTTATTTACGTGAGAATTCTTTTTCTCTTGGTTCTTTGACG
386 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACG
* * * *
15530538 AAATTTCAAACTTGCCAAA-CTTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
1 AAATTTCGAACTTGTCAAATCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * *
15530602 CGATCCCTTCCTTCGA-AAAATTTTCGAACATTCCATGCTTC-GG-TATCGCATCATTTGGTCTA
66 CGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCTA
* * * *
15530664 AAAAGTTATCATTTTGCAAACAACTTTTGGTCTGTGAATTAAAAACTTATTTACGGGGGAGTTGT
130 AAAAGTTATCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGT
* * *
15530729 TTCTCTCTTTCTTCTTGGATGAAATTCCGAACTCGTCAAACATGTACGAGTTCTTTTATAACATC
195 TTCTCTCTTGCTTCTTGGATGAAATTCCGAACTCGTCAAACATTTACAAGTTCTTTTATAACATC
* * * * *
15530794 GGTTCCCGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATGATCGG
260 GATT-CCTTGAGTATTCAAGACGATCCATTCCATCGACCAATTTTCCGA-ACATTCCATGATCGG
* * *
15530858 GAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAATTAAA
323 GAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGGAAAC-ACTTTTGGTCTTTGAATTAAA
* * * *
15530923 AACTTATTTACGTGCA-AAATGTTTATATCTT-GTTCTTGGACG
386 AACTTATTTACGTG-AGAATTGTTTCTCTCTTGGTTCTTAGACG
* * * * *
15530965 AACTTTCGAACTTGTC-AACCTTTATGAGTTCTTTCATAACTTCGGTT-CGTAAGAGTATTCAAG
1 AAATTTCGAACTTGTCAAATCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAG
* *
15531028 ACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTA
65 ACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
* * * *
15531093 AAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAGTTG
130 AAAA-GTTATCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTG
** * *
15531158 TTTCTCTCTTGCTTCTTGGACAAAATTCCAAACAT-GTCAAACATTTACAAGTTCTTTTGTAACA
194 TTTCTCTCTTGCTTCTTGGATGAAATTCCGAAC-TCGTCAAACATTTACAAGTTCTTTTATAACA
* * * *
15531222 TCGATTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGATCG
258 TCGATTCCT-TGAGTATTCAAGACGATCCATTCCATCGACCAATTTTCCGAACATTCCATGATCG
* * * *
15531285 GGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTT-GAAATAACTTTTGGTCTTTGAATTA
322 GGAAATCGCATCATTTGGTCTAAA-AGTTTGTC-ATTTTGGAAA-CACTTTTGGTCTTTGAATTA
* * * *
15531349 AAAACTTTTTTACGT-AGGAATTGTTTCTCTCTTTG-TCCTAGA-T
384 AAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTAGACG
* * * * * *
15531392 TAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAG
1 AAATTTC-GAACTTGTCAAATCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
* * * * *
15531457 ATGATCCATTCCTTCGACCAATTTTTTCGATCATT-TATGCTCGGGAAATCGCACCATTTGATCT
65 ACGATCCATTCCTTCGACCAA-TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT
* * *
15531521 GAAAAAATT-TCA-TTTGTAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATT
129 -AAAAAGTTATCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTT
* * ** * *
15531584 G-CT-TCTCTTGGTTCTTAAATGAACTTCCGAAC-CAGTGAAACATTTACAAGTTCTTTTATAAC
193 GTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTC-GTCAAACATTTACAAGTTCTTTTATAAC
* * * * **
15531646 TTCTATTCCTTAGAGTATGCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCTC
257 ATCGATTCCTT-GAGTATTCAAGACGATCCATTCCATCGACCAATTTTCCGAACATTCCATGATC
* * *
15531711 TGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
321 GGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGGAAAC-ACTTTTGGTCTTTGAATTA
* * * * *
15531776 AAAACTTATTTACGTGAAAAATCTTTTTCTCTTGGTTCTTTGACG
384 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACG
* * * *
15531821 AAATTTCGAACTTGCCAAA-CTTTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATTCTAG
1 AAATTTCGAACTTGTCAAATC-TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
* * * * * * *
15531885 ACGATCCCTTCCTTCGA-GAATTTTTTGAATATTCCATGCTTCGGG-TATCACATTATTTGGTCT
65 ACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCT
15531948 AAAAAGTTTATCATTT
129 AAAAAG-TTATCATTT
15531964 ACGGGGGAGT
Statistics
Matches: 1542, Mismatches: 254, Indels: 116
0.81 0.13 0.06
Matches are distributed among these distances:
424 53 0.03
425 95 0.06
426 138 0.09
427 439 0.28
428 425 0.28
429 240 0.16
430 151 0.10
431 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (428 bp):
AAATTTCGAACTTGTCAAATCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
CGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
AAAGTTATCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTT
TCTCTCTTGCTTCTTGGATGAAATTCCGAACTCGTCAAACATTTACAAGTTCTTTTATAACATCG
ATTCCTTGAGTATTCAAGACGATCCATTCCATCGACCAATTTTCCGAACATTCCATGATCGGGAA
ATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGGAAACACTTTTGGTCTTTGAATTAAAAACTT
ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACG
Found at i:15531572 original size:641 final size:640
Alignment explanation
Indices: 15529709--15531960 Score: 2924
Period size: 641 Copynumber: 3.5 Consensus size: 640
15529699 AACCTTTATG
* * * *
15529709 AGTTCTTTCATAACTTCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCG
1 AGTTCTTTCATAACTTCGATTCCTAAGAGTATTCAAGACGATCCATTCCATAGACCAATTTTCCG
15529774 AACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAA-TTTGTCATTTTGTAAACAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTT
* * *
15529838 TGGACTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTGTCTTGCTTCTTGGACGAAATTC
131 TGGACTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTGCTTCTTGGACGAAATTC
* * * * *
15529903 CAAACATGTCAAACATTTACAAGTTCTTTTGTAACATCGATTCCTGT-GAGTTTTCAAGACGAT-
196 CAAACATGCCAAACATTTACAAGATCTTTTATAACATCGATTCCT-TAAAGTATTCAAGACGATC
*
15529966 CCATCCTTCGACCAATTTTT-GAA-AATCCATG-ATCGGGAAATCGCATCAGTTGGTCTAAATAG
260 CCATCCTTCGA-CAATTTTTCGAACAATCCATGCATCGGG-AATCGCATCAGTTGGTCTAAAAAG
*
15530028 TTTATCAATGTGGAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAGGAATTGTTTCT
323 TTTATCAATGTTGAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAGGAATTGTTTCT
15530093 CTCTTTGCTCCTAGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTT
388 CTCTTTG-TCCTAGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTT
* *
15530158 CCTGCGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGACCATTTTATGCTCGGGAAAT
452 CCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGATCA-TTTATGCTCGGGAAAT
*
15530223 CGTACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATTAAAAACTT
516 CGCACCATTTGATCTAAAAA--TTTTCATTTTGTAAACAACTTTTGGTCTATAAATTAAAAACTT
*
15530288 ATTTACGTGAGAATTGCTTCTCTTGGTCTTAAATGAACTTTCGAACCAGTGAAACATTTACA
579 ATTTACGTGAGAATTGCTTCTCTTGTTCTTAAATGAACTTTCGAACCAGTGAAACATTTACA
* * * * *
15530350 AGTTCTTTTATAACTTCTATTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCG
1 AGTTCTTTCATAACTTCGATTCCTAAGAGTATTCAAGACGATCCATTCCATAGACCAATTTTCCG
* * * * *
15530415 AACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAAC-ACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTT
* * * * *
15530479 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTTTCTCTTGGTTCTTTGACGAAATTT
131 TGGACTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTGCTTCTTGGACGAAATTC
* * *
15530544 CAAACTTGCCAAAC-TTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCC
196 CAAACATGCCAAACATTTACAAGATCTTTTATAACATCGATTCCTTAAAGTATTCAAGACGATCC
* * * * * * *
15530608 CTTCCTTCGAAAAATTTTCGAACATTCCATGCTTC-GGTATCGCATCATTTGGTCTAAAAAG-TT
261 CATCCTTCGACAATTTTTCGAACAATCCATGCATCGGGAATCGCATCAGTTGGTCTAAAAAGTTT
* * * * ** *
15530671 ATC-ATTTTGCAAACAACTTTTGGTCTGTGAATTAAAAACTTATTTACGGGGGAGTTGTTTCTCT
326 ATCAATGTTG-AAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAGGAATTGTTTCTCT
* * * * * * ** ** * *
15530735 CTTTCTTCTTGGATGAAATTCCGAACTCGTCAAACATGTACGAGTTCTTTTATAACATCGGTTCC
390 CTTT-GTCCTAGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * *
15530800 CGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATGATCGGGAAATC
454 TGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGAT-CATT-TATGCTCGGGAAATC
* * * * * * *
15530864 GCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCT-TGAATTAAAAACTT
517 GCACCATTTGAT-CTAAAAATTT-TCATTTTGTAAACAACTTTTGGT-CTATAAATTAAAAACTT
* * * ** * ** * * **
15530928 ATTTACGTGCA-AAATGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGT-CAACCTTTATG
579 ATTTACGTG-AGAATTG-CT-TCTCTTGTTCTTAAATGAACTTTCGAACCAGTGAAACATTTACA
* * * *
15530991 AGTTCTTTCATAACTTCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCG
1 AGTTCTTTCATAACTTCGATTCCTAAGAGTATTCAAGACGATCCATTCCATAGACCAATTTTCCG
*
15531056 AACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTT
* * *
15531121 TGGACTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGCTTCTTGGACAAAATTC
131 TGGACTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTGCTTCTTGGACGAAATTC
* * * * *
15531186 CAAACATGTCAAACATTTACAAGTTCTTTTGTAACATCGATTCCTGT-GAGTTTTCAAGACGAT-
196 CAAACATGCCAAACATTTACAAGATCTTTTATAACATCGATTCCT-TAAAGTATTCAAGACGATC
*
15531249 CCATCCTTCGACCAATTTTTCGAA-AATCCATG-ATCGGGAAATCGCATCAGTTGGTCTAAATAG
260 CCATCCTTCGA-CAATTTTTCGAACAATCCATGCATCGGG-AATCGCATCAGTTGGTCTAAAAAG
15531312 TTTATCAATGTTGAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAGGAATTGTTTCT
323 TTTATCAATGTTGAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAGGAATTGTTTCT
15531377 CTCTTTGTCCTAGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTC
388 CTCTTTGTCCTAGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTC
15531442 CTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTTCGATCATTTATGCTCGGGAAATC
453 CTGAGAGTATTCAAGATGATCCATTCCTTCGACCAA-TTTTTCGATCATTTATGCTCGGGAAATC
*
15531507 GCACCATTTGATCTGAAAAAATTTCA-TTTGTAAACAACTTTTGGTCTATAAATTAAAAACTTAT
517 GCACCATTTGATCT-AAAAATTTTCATTTTGTAAACAACTTTTGGTCTATAAATTAAAAACTTAT
*
15531571 TTACGTGAGAATTGCTTCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACA
581 TTACGTGAGAATTGCTTCTCTT-GTTCTTAAATGAACTTTCGAACCAGTGAAACATTTACA
* * * * * *
15531632 AGTTCTTTTATAACTTCTATTCCTTAGAGTATGCAAGACGATCCATTCCATCGATCAATTTTCCG
1 AGTTCTTTCATAACTTCGATTCCTAAGAGTATTCAAGACGATCCATTCCATAGACCAATTTTCCG
* * * * *
15531697 AACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTT
* * * * * * *
15531762 TGGTCTTTGAATTAAAAACTTATTTACGTGAAAAATCTTTTTCTCTTGGTTCTTTGACGAAATTT
131 TGGACTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTGCTTCTTGGACGAAATTC
* * * * * *
15531827 CGAACTTGCCAAACTTTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATTCTAGACGATCC
196 CAAACATGCCAAACATTTACAAGATCTTTTATAACATCGATTCCTTAAAGTATTCAAGACGATCC
* * * * * * * * * *
15531892 CTTCCTTCGAGAATTTTTTGAATATTCCATGCTTCGGGTATCACATTATTTGGTCTAAAAAGTTT
261 CATCCTTCGACAATTTTTCGAACAATCCATGCATCGGGAATCGCATCAGTTGGTCTAAAAAGTTT
15531957 ATCA
326 ATCA
15531961 TTTACGGGGG
Statistics
Matches: 1358, Mismatches: 218, Indels: 69
0.83 0.13 0.04
Matches are distributed among these distances:
639 16 0.01
640 284 0.21
641 607 0.45
642 192 0.14
643 184 0.14
644 68 0.05
645 7 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (640 bp):
AGTTCTTTCATAACTTCGATTCCTAAGAGTATTCAAGACGATCCATTCCATAGACCAATTTTCCG
AACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTT
TGGACTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTGCTTCTTGGACGAAATTC
CAAACATGCCAAACATTTACAAGATCTTTTATAACATCGATTCCTTAAAGTATTCAAGACGATCC
CATCCTTCGACAATTTTTCGAACAATCCATGCATCGGGAATCGCATCAGTTGGTCTAAAAAGTTT
ATCAATGTTGAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAGGAATTGTTTCTCTC
TTTGTCCTAGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTG
AGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGATCATTTATGCTCGGGAAATCGCAC
CATTTGATCTAAAAATTTTCATTTTGTAAACAACTTTTGGTCTATAAATTAAAAACTTATTTACG
TGAGAATTGCTTCTCTTGTTCTTAAATGAACTTTCGAACCAGTGAAACATTTACA
Found at i:15532515 original size:215 final size:215
Alignment explanation
Indices: 15531973--15535958 Score: 4262
Period size: 215 Copynumber: 18.8 Consensus size: 215
15531963 TACGGGGGAG
* * * *
15531973 TTGTTTCTCCCTT-CTTCTTGGATGAAATTTCGAACTCGTCAAACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * *
15532037 CATCGGTTCCCGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATGA
66 CTTCGGTT-CCTTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGC
* * *
15532101 TCGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTG-AAACAACTTTTGGTCCTTGAA
129 TCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15532164 TTAAAAACTTATTTACGTGCA-AA
193 TTAAAAACTTATTTACGTG-AGAA
* * * * * * * *
15532187 -TGTTTATATCTT--TTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* ** *
15532249 CTTCGGTTTCGAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 CTTCGGTTCCTTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15532314 GGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
131 GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15532379 AAAACTTATTTACGTGAGAG
196 AAAACTTATTTACGTGAGAA
** * * * *
15532399 TTGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15532464 CATCGATTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
66 CTTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * *
15532527 CGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATT
130 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15532592 AAAAACTT-TTTACGTGA-AA
195 AAAAACTTATTTACGTGAGAA
* * ** * ** * *
15532611 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACA-TTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
** * * * *
15532673 CTTTAGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCT
66 CTTCGGTTCCTT-GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15532738 CTGGAAGTCGCATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTTTGAATT
130 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* *
15532803 AAAAAATTATTTACGTGATAA
195 AAAAACTTATTTACGTGAGAA
* * * * * * * * *
15532824 TTCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGTCAAACTTTTAAGAGATCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * **
15532889 CTTCTCGTT-CTTAAAGTATTCAAGACAAT-CATTCCTTCGAGAAATTTTTCGAACATTCCATGC
66 CTTC-GGTTCCTT-GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * *
15532952 TTTGGG-AATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTGTGAA
129 -TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
15533016 TTAAAAACTTATTTACGTGGGAG
193 TTAAAAACTTATTTACGTGAGAA
* * *
15533039 TTGTTTCTCTCTTTCTTCTTGGATGAAATTCCGAACTCGTCAAACATGTACGAGTT-TTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* *
15533103 C-TCGGTTCCTGTGAGTATTCAAGATGATCCATTCCTTC-ACCAA-TTTTC-ATACATTCCAAGC
66 CTTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGC
* * * * *
15533164 TCGGGAAATCACATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAA
129 TCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
15533228 TTAAAACCTTATTTACGTG-CAA
193 TTAAAAACTTATTTACGTGAGAA
* * ** *
15533250 TTGTTTATCTCTT-CTTCTTGGATGAACTTTTGAACTTGTCAAAC-TTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15533313 CTTCGGTTCCTAAGAGTATTCAAGAAGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15533378 CGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
130 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* *
15533443 AAAAACTTATTTACGGGAGAG
195 AAAAACTTATTTACGTGAGAA
* * * *
15533464 TTGTTGT-T-TCTTG-TTCTTGGACGAAATTCCAAACATGTCAAACA-TTACAAGTTCTTTTATA
1 TTGTT-TCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
*
15533525 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGACCAA-TTTTCTGAACATTCCATG
65 ACTTCGGTTCCTT-GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTC-GAACATTCCATG
*
15533589 CTCGGGAAATCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
128 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
15533654 TTAAAAA-ATATTTACGTGATAA
193 TTAAAAACTTATTTACGTGAGAA
* * * * *
15533676 TCT-TTT-TCTCTTGGTTCTT-GACGAAATTTCGAACTTGTCAAACTTTTA-GAGATCTTTTATA
1 T-TGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15533737 ACTTC-GTTCCTTAAATATTCAAGACGAT-CACTTCCTTCGA-GAAATTTTCGAACATTCCATGC
65 ACTTCGGTTCCTTGAGTATTCAAGACGATCCA-TTCCTTCGACCAATTTTTCGAACATTCCATGC
* * * *
15533799 TTGGG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGAAAACAA-TTTTGGTCTGTGAAT
129 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15533862 TAAAAACTTATTTACGTG-GAG
194 TAAAAACTTATTTACGTGAGAA
* *
15533883 TTGTTTCTCT-TT-CTTCTTGGATGAAATTCCGAACTCGTCAAACA-TTACGAGTTTTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15533945 CATCGGTTCCTGTGAGTATTCAAGATGATCCATTCCTTCGACCAA-TTTTC-ATACATTCCAAGC
66 CTTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGC
* * * * *
15534008 TCGGGAAATCACATCATATGGTCCT-AATAGTTTGTCATTTTG-GAACAACTTTTGGTCCTTGAA
129 TCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15534071 TTAAAAACTTATTTACGTGCA-AC
193 TTAAAAACTTATTTACGTG-AGAA
** * ** * * *
15534094 TTGTTT-AATCTT-CTTCTTGGATGAACTT-TTAACTTGTCAAACCTTTATGAGTTCTTTCATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15534156 CTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAA-TTTTCGAACA-T-CAT-AT
66 CTTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
*
15534217 TGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
130 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15534282 AAAAACTTATTTACGTGAG-A
195 AAAAACTTATTTACGTGAGAA
* * * * *
15534302 -GGTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACCATGTCAAACATTTACAAGTTCTTTT-TA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAA-CTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15534365 TACTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAA-TTTTCTGAACATTCCAT
65 -ACTTCGGTTCCTT-GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTC-GAACATTCCAT
* * * *
15534429 TCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
127 GCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
*
15534494 ATTAAAAACTTATTTACGTGAAAA
192 ATTAAAAACTTATTTACGTGAGAA
* * * * * * * * * * *
15534518 ATCTTTTTCTC-TGGTTCTTTGACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * **
15534582 CTTCGATTCCTTAAAGTATTCAAGATGATCCCTTCCTTCGAGAAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTT-GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
** * * * *
15534647 TC-GGTTATCGCAT--TATGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTGTGAAT
129 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * *
15534709 TAAAAACTTATTTACGGGGGAG
194 TAAAAACTTATTTACGTGAGAA
* * * *
15534731 TTGTTTCTCTCTTTCTTCTTGGATGAAATTTCGAACTCGTC-AACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * *
15534795 CATCGGTTCCCGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATGA
66 CTTCGGTT-CCTTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGC
* * * *
15534859 TCGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAA
129 TCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15534923 TTAAAAACTTATTTACGTGCA-AA
193 TTAAAAACTTATTTACGTG-AGAA
* * * * * ** * * *
15534946 ATG-TTATATCTTG-TTCTTGGACGAACTTTTGAACTTGTCAAACCTTTATGAGTTCTTTCATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15535009 CTTCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15535074 CGGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
130 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15535139 AAAAACTTATTTACGTGAGAG
195 AAAAACTTATTTACGTGAGAA
* * * * *
15535160 TTGTTTCTCTCTTGCTTCTTGGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15535225 CATCGG-TCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTC-AA-AATCCATGAT
66 CTTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * *
15535286 CGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTG-AAATAACTTTTGGTCTTTGAATT
130 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15535350 AAAAACTTTTTTACGT-AGGAA
195 AAAAACTTATTTACGTGA-GAA
* * * * * * *
15535371 TTGTTTCTCTCTT--TGTCCTAGATTAACTTCTGAACTTTTCAAA-TTTTACGAGTTCTTTTATA
1 TTGTTTCTCTCTTGCT-TCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15535433 ACTTCGGTTCCTGCGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGATCCA-T--ATG
65 ACTTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * * *
15535495 CTCGGGAAATCGC--CATTTGATCTGAAAAA-ATT-TCATTCTGTAAACAACTTTTGGTCTATAA
128 CTCGGGAAATCGCATCATTTGGTCT-AAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
15535556 ATTAAAAACTTATTTACGTGAGAA
192 ATTAAAAACTTATTTACGTGAGAA
* * ** * ** * *
15535580 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGT-GAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15535642 CTTC--TATCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTC
66 CTTCGGT-TCCTT-GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * *
15535705 TCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAAACAACTTTTGGTCTTTGAA
129 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAA
*
15535770 TTAAAAACTTATTTACGTGAAAA
193 TTAAAAACTTATTTACGTGAGAA
* * * * * * *
15535793 TCT-TTT-TCTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAACTTTTACGAGATCTTTTATA
1 T-TGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * ** *
15535856 ACTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAGAAATTTTT-GAATATTCCATGC
65 ACTTCGGTTCCTT-GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * * *
15535920 TTCGGG-TATCACATTATTTGGTCT-AAAAGTTTATCATTT
129 -TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
15535959 ACGGGGGAGT
Statistics
Matches: 3160, Mismatches: 490, Indels: 244
0.81 0.13 0.06
Matches are distributed among these distances:
206 12 0.00
207 118 0.04
208 147 0.05
209 260 0.08
210 244 0.08
211 463 0.15
212 316 0.10
213 533 0.17
214 338 0.11
215 543 0.17
216 175 0.06
217 11 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (215 bp):
TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
CTTCGGTTCCTTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
AAAACTTATTTACGTGAGAA
Found at i:15532751 original size:425 final size:426
Alignment explanation
Indices: 15531973--15535958 Score: 4350
Period size: 425 Copynumber: 9.4 Consensus size: 426
15531963 TACGGGGGAG
* * * * *
15531973 TTGTTTCTCCCTT-CTTCTTGGATGAAATTTCGAACTCGTCAAACATGTACGAGTTCTTTTATAA
1 TTGTTT-TCTCTTGCTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * *
15532037 CATCGGTTCCCGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATGA
65 CTTCGGTT-CCTTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGC
* * *
15532101 TCGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTG-AAACAACTTTTGGTCCTTGAA
128 TCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * * * **
15532164 TTAAAAACTTATTTACGTGCAA-ATGTTTATATCTT--TTCTTGGACGAACTTTCGAACTTGTCA
192 TTAAAAACTTATTTACGTG-AAGTTG-TTCTCTCTTGCTTCTTGGATGAAATTCCGAACCAGTCA
* ** * * * * *
15532226 AACCTTTATGAGTTCTTTCATAACTTCGGTTTC-GAGAGTATTCAAGACGATCCATTCCTTAGAC
255 AA-CATTACAAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGAC
* * *
15532290 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGT
319 CAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGT
* *
15532355 AAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAG
384 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-AA
* * * * * * *
15532399 TTGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTT-TCTCTTGCTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * *
15532464 CATCGATTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
65 CTTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * *
15532527 CGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * ** * *
15532592 AAAAACTT-TTTACGTGAAATTGCT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACA
194 AAAAACTTATTTACGTGAAGTTGTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCAGTCAAACA
** *
15532655 TTACAAGTTCTTTTATAACTTTAGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATT
259 TTACAAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGACCAATT
* * * *
15532720 TTCCGAACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACA
324 TTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACA
*
15532785 ACTTTTGGTCTTTGAATTAAAAAATTATTTACGTGATAA
389 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-AA
* * * * *
15532824 TTCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGTCAAACTTTTAAGAGATCTTTTATAA
1 TT-GTTTTCTCTTGCTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * **
15532889 CTTCTCGTT-CTTAAAGTATTCAAGACAAT-CATTCCTTCGAGAAATTTTTCGAACATTCCATGC
65 CTTC-GGTTCCTT-GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * *
15532952 TTTGGG-AATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTGTGAA
128 -TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
15533016 TTAAAAACTTATTTACGTGGGAGTTGTTTCTCTCTTTCTTCTTGGATGAAATTCCGAACTC-GTC
192 TTAAAAACTTATTTACGT-GAAGTTG-TTCTCTCTTGCTTCTTGGATGAAATTCCGAAC-CAGTC
* * *
15533080 AAACATGTACGAGTT-TTTTATAAC-TCGGTTCCTGT-GAGTATTCAAGATGATCCATTCCTTC-
254 AAACAT-TACAAGTTCTTTTATAACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCATCG
* * * *
15533141 ACCAATTTT-C-ATACATTCCAAGCTCGGGAAATCACATCATATGGTCCT-AATAGTTTGTCATT
317 ACCAATTTTCCGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATT
* * * *
15533203 TTGGAAACAACTTTTGGTCCTTGAATTAAAACCTTATTTACGTGCAA
380 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAA
* * * *
15533250 TTGTTTATCTCTT-CTTCTTGGATGAACTTTTGAACTTGTCAAAC-TTTATGAGTTCTTTTATAA
1 TTGTTT-TCTCTTGCTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * *
15533313 CTTCGGTTCCTAAGAGTATTCAAGAAGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCT
65 CTTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15533378 CGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * *
15533443 AAAAACTTATTTACGGGAGAGTTGTTGTTTCTTG-TTCTTGGACGAAATTCC-AAACATGTCAAA
194 AAAAACTTATTTACGTGA-AGTTGTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCA-GTCAAA
15533506 CATTACAAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGACCAA
257 CATTACAAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGACCAA
* *
15533571 TTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAA
322 TTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAA
*
15533636 CAACTTTTGGTCTTTGAATTAAAAA-ATATTTACGTGATAA
387 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-AA
* *
15533676 TCT-TTTTCTCTTGGTTCTT-GACGAAATTTCGAACTTGTCAAACTTTTA-GAGATCTTTTATAA
1 T-TGTTTTCTCTTGCTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * *
15533738 CTTC-GTTCCTTAAATATTCAAGACGAT-CACTTCCTTCGA-GAAATTTTCGAACATTCCATGCT
65 CTTCGGTTCCTTGAGTATTCAAGACGATCCA-TTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * *
15533800 TGGG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGAAAACAA-TTTTGGTCTGTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* *
15533863 AAAAACTTATTTACGTGGAGTTGTT-TCTCTTTCTTCTTGGATGAAATTCCGAACTC-GTCAAAC
194 AAAAACTTATTTACGTGAAGTTGTTCTCTCTTGCTTCTTGGATGAAATTCCGAAC-CAGTCAAAC
* * * * *
15533926 ATTACGAGTTTTTTTATAACATCGGTTCCTGT-GAGTATTCAAGATGATCCATTCCTTCGACCAA
258 ATTACAAGTTCTTTTATAACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCATCGACCAA
* * * * *
15533990 TTTT-C-ATACATTCCAAGCTCGGGAAATCACATCATATGGTCCT-AATAGTTTGTCATTTTG-G
322 TTTTCCGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTA
* *
15534051 AACAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTGCAAC
385 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AAA
** * * * * * *
15534094 TTGTTTAATCTT-CTTCTTGGATGAACTTT-TAACTTGTCAAACCTTTATGAGTTCTTTCATAAC
1 TTGTTTTCTCTTGCTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * *
15534157 TTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAA-TTTTCGAACA-T-CAT-ATT
66 TTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
15534218 GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * *
15534283 AAAACTTATTTACGTGAGAGGT-TTCTCTCTTGGTTCTTGGATGAAATTCCAAACCATGTCAAAC
195 AAAACTTATTTACGTGA-AGTTGTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCA-GTCAAAC
* *
15534347 ATTTACAAGTTCTTTT-TATACTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCA
258 A-TTACAAGTTCTTTTATA-ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGACCA
* * * * *
15534411 ATTTTCTGAACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAA
321 ATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
15534476 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAAA
386 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG--AAA
* * * * *
15534519 TCT-TTTTCTC-TGGTTCTTTGACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTTTATAA
1 T-TGTTTTCTCTTGCTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * **
15534582 CTTCGATTCCTTAAAGTATTCAAGATGATCCCTTCCTTCGAGAAATTTTTCGAACATTCCATGCT
65 CTTCGGTTCCTT-GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
** * * * *
15534647 TC-GGTTATCGCAT--TATGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTGTGAAT
128 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
15534709 TAAAAACTTATTTACGGGGGAGTTGTTTCTCTCTTTCTTCTTGGATGAAATTTCGAACTC-GTC-
193 TAAAAACTTATTTAC-GTGAAGTTG-TTCTCTCTTGCTTCTTGGATGAAATTCCGAAC-CAGTCA
* * * * *
15534772 AACATGTACGAGTTCTTTTATAACATCGGTTCCCGT-GAGTATTCAAGATGATCCATTCCATCAA
255 AACAT-TACAAGTTCTTTTATAACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCATCGA
* * * *
15534836 CCAATTTTTC-ATACATTCCATGATCGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTT
318 CCAATTTTCCGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTT
* *
15534899 TGGAAACAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTGCAAA
381 TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AAA
* * * * * * * *
15534946 ATGTTATATCTTG-TTCTTGGACGAACTTTTGAACTTGTCAAACCTTTATGAGTTCTTTCATAAC
1 TTGTTTTCTCTTGCTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * *
15535010 TTCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15535075 GGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* *
15535140 AAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGCTTCTTGGACGAAATTCC-AAACATGTCAAA
195 AAAACTTATTTACGTGA-AGTTG-TTCTCTCTTGCTTCTTGGATGAAATTCCGAACCA-GTCAAA
* * * *
15535204 CATTTACAAGTTCTTTTGTAACATCGG-TCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACC
257 CA-TTACAAGTTCTTTTATAACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCATCGACC
* * * * * * * *
15535266 AATTTTTC-AA-AATCCATGATCGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTG-A
320 AATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* * *
15535328 AATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAGGAA
385 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT-GAAA
* * ** * *
15535371 TTGTTTCTCTCTT--TGTCCTAGA-TTAACTTCTGAACTTTTCAAA-TTTTACGAGTTCTTTTAT
1 TTGTTT-TCTCTTGCT-TCTTGGACGAAATTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * *
15535432 AACTTCGGTTCCTGCGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGATCCA-T--AT
63 AACTTCGGTTCCT-TGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCAT
* * * * *
15535494 GCTCGGGAAATCGC--CATTTGATCTGAAAAA-ATT-TCATTCTGTAAACAACTTTTGGTCTATA
126 GCTCGGGAAATCGCATCATTTGGTCT-AAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
* * * ** *
15535555 AATTAAAAACTTATTTACGTGAGAATTGCT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGT-
190 AATTAAAAACTTATTTACGTGA-AGTTGTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCAGTC
*
15535618 GAACATTTACAAGTTCTTTTATAACTTC--TATCCTTAGAGTATTCAAGACGATCCATTCCATCG
254 AAACA-TTACAAGTTCTTTTATAACTTCGGT-TCCTTAGAGTATTCAAGACGATCCATTCCATCG
* * * * *
15535681 ATCAATTTTCCGAACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTT
317 ACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTT
15535746 GTAAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAA
382 GT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AAA
* * * *
15535793 TCT-TTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAACTTTTACGAGATCTTTTATAA
1 T-TGTTTTCTCTTGCTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * ** *
15535857 CTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAGAAATTTTT-GAATATTCCATGCT
65 CTTCGGTTCCTT-GAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* * * *
15535921 TCGGG-TATCACATTATTTGGTCT-AAAAGTTTATCATTT
128 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
15535959 ACGGGGGAGT
Statistics
Matches: 3001, Mismatches: 425, Indels: 268
0.81 0.12 0.07
Matches are distributed among these distances:
416 1 0.00
417 101 0.03
418 174 0.06
419 143 0.05
420 185 0.06
421 75 0.02
422 158 0.05
423 190 0.06
424 170 0.06
425 628 0.21
426 375 0.12
427 287 0.10
428 242 0.08
429 157 0.05
430 104 0.03
431 11 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (426 bp):
TTGTTTTCTCTTGCTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
TTCGGTTCCTTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCG
GGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
AAACTTATTTACGTGAAGTTGTTCTCTCTTGCTTCTTGGATGAAATTCCGAACCAGTCAAACATT
ACAAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGACCAATTTT
CCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAC
TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAA
Found at i:15533416 original size:213 final size:214
Alignment explanation
Indices: 15531973--15535958 Score: 4273
Period size: 213 Copynumber: 18.8 Consensus size: 214
15531963 TACGGGGGAG
* * * *
15531973 TTGTTTCTCCCTTCTTCTTGGATGAAATTTCGAACTCGTCAAACATGTACGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * * * *
15532038 ATCGGTTCCCGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATGAT
66 TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGCT
* * *
15532102 CGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTG-AAACAACTTTTGGTCCTTGAAT
130 CGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15532165 TAAAAACTTATTTACGTGCAA
194 TAAAAACTTATTTACGTGGAA
* * * * * * * *
15532186 ATGTTTATATCTT-TTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* *
15532250 TTCGGTTTC-GAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15532314 GGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
131 GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15532379 AAAACTTATTTACGTGAGAG
196 AAAACTTATTTACGTG-GAA
** * * * * *
15532399 TTGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * *
15532464 CATCGATTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
65 CTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * *
15532527 CGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATT
130 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15532592 AAAAACTT-TTTACGTGAAA
195 AAAAACTTATTTACGTGGAA
* * ** * * ** * *
15532611 TTGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACA-TTACAAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
** * * * * *
15532674 TTTAGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCTC
66 TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15532739 TGGAAGTCGCATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
131 GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* *
15532804 AAAAATTATTTACGTGATAA
196 AAAACTTATTTACGTG-GAA
* * * * * * *
15532824 TTCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGTCAAACTTTTAAGAGATCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * **
15532889 CTTCTCGTT-CTTAAAGTATTCAAGACAAT-CATTCCTTCGAGAAATTTTTCGAACATTCCATGC
65 CTTC-GGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * *
15532952 TTTGGG-AATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTGTGAA
129 -TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15533016 TTAAAAACTTATTTACGTGGGAG
193 TTAAAAACTTATTTACGT-GGAA
* * * *
15533039 TTGTTTCTCTCTTTCTTCTTGGATGAAATTCCGAACTCGTCAAACATGTACGAGTT-TTTTATAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15533103 C-TCGGTTCCTGTGAGTATTCAAGATGATCCATTCCTTC-ACCAA-TTTTC-ATACATTCCAAGC
65 CTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGC
* * * * *
15533164 TCGGGAAATCACATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAA
129 TCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
15533228 TTAAAACCTTATTTACGTGCAA
193 TTAAAAACTTATTTACGTGGAA
* * * * *
15533250 TTGTTTATCTCTTCTTCTTGGATGAACTTTTGAACTTGTCAAAC-TTTATGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * *
15533314 TTCGGTTCCTAAGAGTATTCAAGAAGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15533379 GGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
131 GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15533444 AAAACTTATTTACG-GGAGA
196 AAAACTTATTTACGTGGA-A
* * * * *
15533463 GTTGTTGT-T-TCTTGTTCTTGGACGAAATTCCAAACATGTCAAACA-TTACAAGTTCTTTTATA
1 -TTGTT-TCTCTCTTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* *
15533525 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGACCAA-TTTTCTGAACATTCCATG
64 ACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTC-GAACATTCCATG
*
15533589 CTCGGGAAATCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
128 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
15533654 TTAAAAA-ATATTTACGTGATAA
193 TTAAAAACTTATTTACGTG-GAA
* * *
15533676 TCT-TTT-TCTCTTGGTTCTT-GACGAAATTTCGAACTTGTCAAACTTTTA-GAGATCTTTTATA
1 T-TGTTTCTCTCTT-GTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15533737 ACTTC-GTTCCTTA-AATATTCAAGACGAT-CACTTCCTTCGA-GAAATTTTCGAACATTCCATG
64 ACTTCGGTTCCTGAGAGTATTCAAGACGATCCA-TTCCTTCGACCAATTTTTCGAACATTCCATG
* * * *
15533798 CTTGGG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGAAAACAA-TTTTGGTCTGTGAA
128 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15533861 TTAAAAACTTATTTACGTGGAG
193 TTAAAAACTTATTTACGTGGAA
* * * *
15533883 TTGTTTCTCT-TTCTTCTTGGATGAAATTCCGAACTCGTCAAACA-TTACGAGTTTTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * *
15533946 ATCGGTTCCTGTGAGTATTCAAGATGATCCATTCCTTCGACCAA-TTTTC-ATACATTCCAAGCT
66 TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGCT
* * * * *
15534009 CGGGAAATCACATCATATGGTCCT-AATAGTTTGTCATTTTG-GAACAACTTTTGGTCCTTGAAT
130 CGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15534072 TAAAAACTTATTTACGTGCAA
194 TAAAAACTTATTTACGTGGAA
** * * * * * *
15534093 CTTGTTT-AATCTTCTTCTTGGATGAACTTT-TAACTTGTCAAACCTTTATGAGTTCTTTCATAA
1 -TTGTTTCTCTCTTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15534156 CTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAA-TTTTCGAACA-T-CAT-AT
65 CTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
*
15534217 TGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
130 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15534282 AAAAACTTATTTACGT-GAGA
195 AAAAACTTATTTACGTGGA-A
* * * * *
15534302 -GGTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACCATGTCAAACATTTACAAGTTCTTTT-TA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTTCGAA-CTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15534365 TACTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAA-TTTTCTGAACATTCCAT
64 -ACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTC-GAACATTCCAT
* * * *
15534429 TCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
127 GCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
*
15534494 ATTAAAAACTTATTTACGTGAAAA
192 ATTAAAAACTTATTTACGTG-GAA
* * * * * * * * * *
15534518 ATCTTTTTCTCTGGTTCTTTGACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * * **
15534583 TTCGATTCCTTAAAGTATTCAAGATGATCCCTTCCTTCGAGAAATTTTTCGAACATTCCATGCTT
66 TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-T
** * * * *
15534648 C-GGTTATCGCAT--TATGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTGTGAATT
130 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* *
15534710 AAAAACTTATTTACGGGGGAG
195 AAAAACTTATTTAC-GTGGAA
* * *
15534731 TTGTTTCTCTCTTTCTTCTTGGATGAAATTTCGAACTCGTC-AACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * * *
15534795 CATCGGTTCCCGTGAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATGA
65 CTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGC
* * * *
15534859 TCGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAA
129 TCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15534923 TTAAAAACTTATTTACGTGCAAA
193 TTAAAAACTTATTTACGTG-GAA
* * * * * * * * *
15534946 ATG-TTATATCTTGTTCTTGGACGAACTTTTGAACTTGTCAAACCTTTATGAGTTCTTTCATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * *
15535010 TTCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15535075 GGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
131 GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15535140 AAAACTTATTTACGTGAGAG
196 AAAACTTATTTACGTG-GAA
* * * * * *
15535160 TTGTTTCTCTCTTGCTTCTTGGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15535225 CATCGG-TCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTC-AA-AATCCATGAT
65 CTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * *
15535286 CGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTG-AAATAACTTTTGGTCTTTGAATT
130 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15535350 AAAAACTTTTTTACGTAGGAA
195 AAAAACTTATTTACGT-GGAA
* * * * * *
15535371 TTGTTTCTCTCTT-TGTCCTAGAT-TAACTTCTGAACTTTTCAAA-TTTTACGAGTTCTTTTATA
1 TTGTTTCTCTCTTGT-TCTTGGATGAAATTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15535433 ACTTCGGTTCCTGCGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGATCCA-T--ATG
64 ACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * * *
15535495 CTCGGGAAATCGC--CATTTGATCTGAAAAA-ATT-TCATTCTGTAAACAACTTTTGGTCTATAA
128 CTCGGGAAATCGCATCATTTGGTCT-AAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
15535556 ATTAAAAACTTATTTACGTGAGAA
192 ATTAAAAACTTATTTACGTG-GAA
* * ** * * ** * *
15535580 TTGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGT-GAACATTTACAAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * *
15535643 TTC--TATCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCT
66 TTCGGT-TCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15535706 CTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAAACAACTTTTGGTCTTTGAAT
130 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAAT
*
15535771 TAAAAACTTATTTACGTGAAA
194 TAAAAACTTATTTACGTGGAA
* * * * * * * *
15535792 ATCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * ** *
15535857 CTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAGAAATTTTT-GAATATTCCATGCT
65 CTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* * * *
15535921 TCGGG-TATCACATTATTTGGTCT-AAAAGTTTATCATTT
129 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
15535959 ACGGGGGAGT
Statistics
Matches: 3145, Mismatches: 509, Indels: 237
0.81 0.13 0.06
Matches are distributed among these distances:
206 12 0.00
207 112 0.04
208 141 0.04
209 272 0.09
210 233 0.07
211 462 0.15
212 327 0.10
213 539 0.17
214 328 0.10
215 529 0.17
216 177 0.06
217 13 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (214 bp):
TTGTTTCTCTCTTGTTCTTGGATGAAATTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
GGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
AAAACTTATTTACGTGGAA
Found at i:15536451 original size:213 final size:213
Alignment explanation
Indices: 15535968--15553594 Score: 19230
Period size: 213 Copynumber: 82.7 Consensus size: 213
15535958 TACGGGGGAG
* * * * *
15535968 TTGTTTCTCT-TTTTTCTTGGATGAAATTTCGAACTCGTTAAACATGTACGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * *
15536032 ATCGGTTCCGT-GAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATGAT
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGCT
* * * *
15536095 CGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAATT
129 CGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15536160 AAAAACTTATTTACGTGCA-AA
193 AAAAACTTATTTACGTG-AGAA
* * * * * * * * *
15536181 ATGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* ** *
15536246 TTCTGTTTGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15536311 GGGAAATCGCATCATTTGGACTAAAAATTTGTCA-TTTGTAAACAACTTTTGGACTTTGAATTAA
130 GGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
*
15536375 AAACTTATTTACGTGAGAG
195 AAACTTATTTACGTGAGAA
** * * * *
15536394 TTGTTTCTCTCTTGTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * * *
15536459 ATCGATTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGATC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * *
15536522 GGGAAATCGCATCAGTTGGTCTAAATAGTTTATCA-TGTGGAAATAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15536586 AAAACTT-TTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * ** * ** * *
15536605 TTGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
** * * * *
15536669 TTTAGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCTC
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15536734 TGGAAGTCGCATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTC-TTGAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15536798 AAAACTTATTTACGTGATAA
194 AAAACTTATTTACGTGAGAA
* * * * * * *
15536818 TTCTTTTTCTCTTGGTTCTT-GACGAAATTTCGAACTTGTCAAACTTTTAAGAGATCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * **
15536882 CTTC-GATCCTTA-A-AATTCAAGACAAT-CATTCCTTCGAGAAATTTTTCGAACATTCCATGCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15536943 --GG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTGTGAATT
129 CGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* *
15537005 AAAAACTTATTTACGTGGGAG
193 AAAAACTTATTTACGTGAGAA
* * * *
15537026 TTGTTTCTCTCTTTCTTCTTGGATGAAATTCCGAACTCGTCAAACATGTACGAGTTTTTTTATAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15537091 CATCGGTTCCTGTGAGTATTCAAGATGATCCATTCCTTCAACCAATTTTTC-ATACATTCCAAGC
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGC
* * * * *
15537155 TCGGGAAAT--CATCATATGGTCCTAATAGTTTGTCA-TTTGGAAGCAAC-TTTGGTCCTTGAAT
128 TCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15537216 TAAAAACTTATTTACGTGCA-AC
192 TAAAAACTTATTTACGTG-AGAA
* * * * * * *
15537238 TTGTTTATATCTTCTTCTTGGATGAACTT-TGAACTTGTCAAAC-CTTATGAGTTCTTTTCATAA
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTT-ATAA
* *
15537301 CTTCGGTTCCTAAGAGTATTCAAGAAGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15537366 TGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
129 CGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15537431 -AAAACTTATTTACGTGAG-A
193 AAAAACTTATTTACGTGAGAA
* * * * *
15537450 GTGTTTCTCTCTTGCTTCTTGGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15537515 CTTCTGTTCCTTAGAGTATTCAAGACG-TCCATTCCATCGATCAATTTTCCGAACATTCCATTCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
*
15537579 CTGGAAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
129 CGGGAAA-TCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15537644 TAAAAACTTATTTACGTGAAAA
192 TAAAAACTTATTTACGTGAGAA
* * * * * * *
15537666 TCT-TTT-TCTCTTGGTTCTTTGACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTTTATA
1 T-TGTTTCTCTCTT-GTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * * * *
15537729 ACTTCGATTCCTTAAAGTATTCAAGATGATCCCTTCCTTCGA-GAAATTTTCGAACATTCCATGC
64 ACTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * * *
15537793 TTCGGG-TATCGCAT-A-TTGGTCTAAAAAG-TTATCATTTTGCAAACAACTTTTGGTCTGTGAA
128 -TCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * *
15537854 TTAAAAACTTATTTACGGGGGAG
191 TTAAAAACTTATTTACGTGAGAA
* * * *
15537877 TTGTTTCTCTCTTTCTTCTTGGATGAAATTTCGAACTCGTCAAACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15537942 CATCGGTTCCCGT-GAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATG
65 CTTCGGTT-CC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * * *
15538005 ATCGGGAAATCGATCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTG
127 CTCGGGAAATCG--CATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
15538070 AATTAAAAACTTATTTACGTGCA-AA
189 AATTAAAAACTTATTTACGTG-AGAA
* * * * * ** * * *
15538095 ATGTTTATATCTTG--CTTGGACGAACTTTTGAACTTGTCAAACCTTTATGAGTTCTTTCATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* *
15538158 TTCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15538223 GGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15538288 AAAACTTATTTACGTGAGAG
194 AAAACTTATTTACGTGAGAA
* * * *
15538308 TTCTTTCTCTCTTGCTTCTTGGACGAAATTCC-AAATATGTCAAACATTTACAAGTTCTTCTTAT
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACT-TGTCAAACATTTACGAGTTCTT-TTAT
* *
15538372 AACATCGGTTCCTGTGAGT-TTCAAGACGATCCA--CCTTCGACCAATTTTTCGAA-A-TCCATG
63 AACTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * *
15538432 ATCGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTT-GTCTTTGAA
127 CTCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15538496 TTAAAAACTTTTTTACGT-AGGAA
191 TTAAAAACTTATTTACGTGA-GAA
* * * * * * **
15538519 TTGTTTCTCTCTTG-TCCTAGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * *
15538583 TTCGG-TCCTGAGAGTATTCAACACGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * *
15538647 GGGAAATCGCACCATTTGATCTAAAAAGGTT-TCATTTTGTAAAAACAACTTTTGGTCTATAAAT
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAAT
15538711 TAAAAACTTATTTACGTGAGAA
192 TAAAAACTTATTTACGTGAGAA
* * ** * ** * *
15538733 TTGCTTCTCT-TGGTTCTTCAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * * * *
15538797 TTCTGTTCCTTAGAGTTTTCAAGGCGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCTC
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15538862 TGGAAGTCGCATCATTTGGTCTAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
130 GGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
*
15538927 AAACTTATTTACGTGAAAA
195 AAACTTATTTACGTGAGAA
* * * * * * * *
15538946 TTCTTTTTCTCTGGTTCTTTGACGAAATTTCGAACTTGTCCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGT-CAAACATTTACGAGTTCTTTTATAA
* * * * ** * *
15539011 CTTCGATTCCTTAAAGTATTCAAGATGATCCCTTCCTTCGAGAAATTTCTCGAACATTCCATGGT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCAT-GC
** * * * * *
15539076 TC-GGTTATCGCATTAGTTGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTATGAAT
128 TCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * *
15539140 TAAAAACTTATTTACGGGGGAG
192 TAAAAACTTATTTACGTGAGAA
* * * * * *
15539162 TTGTTTCTCTCTTTCTTCTTGGACGAAATTCCGAACTCGTCAAACATGTGCGAGGTCTTTTATAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * * *
15539227 CATCAGTTCCCGT-GAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-TACATTCCATGA
65 CTTCGGTT-CC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * * * * *
15539290 TCGGTAGATCGCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAAT
128 TCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
15539355 TAAAAACTTATTTACGTGCA-AA
192 TAAAAACTTATTTACGTG-AGAA
* * * * * * * * *
15539377 ATGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* *
15539442 TTCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* **
15539507 GGGAAATCGCATCATTTGGACT-AAAGTTTGTCATTTTGTAAACAACTTTTGGAGTTTGAATTAA
130 GGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
*
15539571 AAACTTATTTACGTGAGAG
195 AAACTTATTTACGTGAGAA
** * * * *
15539590 TTGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * *
15539655 CATCGATTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * *
15539718 C-GGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15539782 AAAAACTT-TTTACGT-AGGAA
193 AAAAACTTATTTACGTGA-GAA
* * * * * *
15539802 TTGTTTCTCTCTTTGTCCTAT--ATTAACTTCTGAACTTTTCAAA-TTTTACGAGTTCTTTTATA
1 TTGTTTCTCTC-TTGTTCT-TGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15539864 ACTTCGGTTCCTGAGAGTATTCAACACGATCCATTCCTTCAACCAATTTTCCGACCATTCCATGC
64 ACTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * * * * *
15539929 TCGGGAAATCACACCATTTGATCTAGAAAGTTT-TCATTCTGTAAACAACTTTTGGTCTATAAAT
128 TCGGGAAATCGCATCATTTGGTCTA-AAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
15539993 TAAAAACTTATTTACGTGAGAA
192 TAAAAACTTATTTACGTGAGAA
* ** * ** * *
15540015 TTGTTTCTCT-TGGTTCTTACATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * *
15540079 TTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCTC
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15540144 TGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15540209 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * * * * * * * *
15540229 TTCTTTTTCTCTTGGTTCTTTGACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * *
15540294 CTTCGATTCCTTAAAGTATTCCAGACGATCCCTTCCTTCGA-GAAATTTTCGAACATTCCATGCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* * * *
15540358 TCGGG-TATCGCAT-A-TTGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTGTGAAT
128 TCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * *
15540420 TAAAAACTTATTTACGGGGGAG
192 TAAAAACTTATTTACGTGAGAA
* * * *
15540442 TTGTTTCTCTCTTTCTTCTTGGATGAAATT-TGAACTCGTCAAACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15540506 CATCGGTTCCCGT-GAGTATTCAAGATGATCCATTCCTTCAACCAATTTTTC-ATACATTCCATG
65 CTTCGGTT-CC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * * *
15540569 ATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAA
127 CTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15540634 TTAAAAACTTATTTACGTGCA-AA
191 TTAAAAACTTATTTACGTG-AGAA
* * * * * * *
15540657 ATGTTTATATCTTGTTCTTGGA-CAAACTTTCGAACTTGTCAAAC-TTTATGAGTTCTTTCATAA
1 TTGTTTCTCTCTTGTTCTTGGATGAAA-TTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15540720 CTTCGGTTCGTAAGAGTATTCAAGATGATCCATTCCTTAGACCAATTTTTCGAACATTTCATGCT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15540785 -GGGAAATCGCATCATTTGGACTAAAAGTTTTTCATTTTGTAAACAACTTTTGGACTTTGAATTA
129 CGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15540849 AAAACTTATTTACGTGAGAG
194 AAAACTTATTTACGTGAGAA
* * * *
15540869 TTGTTTCTCTCTTGCTTCTTGGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15540934 CATCGGTTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * *
15540997 CGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15541062 AAAAACTTTTTTACGT-AGGAA
193 AAAAACTTATTTACGTGA-GAA
* * * ** * * **
15541083 TTGTTTCTCTCTTGCTCCTGGATTAGCTT-TGAACTTTTCAAATTTTTACGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * *
15541147 ATCGGTTCCCGT-GAGTATTCAAGATGATCCATT-CTATCAACCAATTTTTC-ATACATTCTATG
66 TTCGGTT-CC-TAGAGTATTCAAGACGATCCATTCCT-TCGACCAATTTTTCGA-ACATTCCATG
* * * * * *
15541209 GTCAGGAAATCGCATCATATGGTCCAAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAA
127 CTCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15541274 TTAAAAACTTATTTACGTGCA-AC
191 TTAAAAACTTATTTACGTG-AGAA
* * * * *
15541297 TTGTTTATATCTTGTTCTTGGATGAACTTTCGAACTTG------A--T--GAGTTCTTTCATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * *
15541352 TTCGGTTCCTAAGAGTATTC-AGACGATCCATTCTTTAGACCAATTTTTCGAACATTCCATTCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15541416 GGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15541481 AAAACTTATTTACGTGAGAG
194 AAAACTTATTTACGTGAGAA
* * * * *
15541501 TTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * *
15541566 CATCGGTTCCTGTGAGTTTTCAAGATGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * *
15541629 CGGGAAATCGCATCAGTTGGTCTAAATAGTTTATTAATGTGGAAATAACTTTTGGTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15541694 AAAAACTTTTTTACGT-AGGAA
193 AAAAACTTATTTACGTGA-GAA
* * * * * ** *
15541715 TTGTTTCTCTCTTGCTCTTGGATTAACTT-TGAACTTTTCAAATTTTTATGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * *
15541779 TTCGGTTCCTAAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * *
15541844 GGGAAATCGCACCATTTGATCTAAAAAATTT-TCATTTTGTAAACAACTTTTGGTCTATAAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15541908 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* ** * * ** * *
15541928 TT-TCTTCTCT-TGGTTCTTAAATGAACTTCTGAACCAGTGAAACATTTACAAGTTCTTTTATAA
1 TTGT-TTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15541991 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTTCGAACATTCCATTCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15542056 CTGGAAGTCGCATCATTTGGTCTAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
129 CGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15542121 AAAACTTATTTACGTGAAAA
194 AAAACTTATTTACGTGAGAA
* * * * * * * *
15542141 TTCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * **
15542206 CTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCAAGAAATTTTTCGAACATTCCATGCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* * * * *
15542271 TCGGG-TATCGCATTATTTGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTGTGAAT
128 TCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * *
15542335 TAAAAACTTATTTACGGGGGAG
192 TAAAAACTTATTTACGTGAGAA
* * *
15542357 TTGTTTCTCTCTTTCTTCTTGGATGAAATTCCGAACTCGTCAAACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15542422 CATCGGTTCCCGT-GAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATG
65 CTTCGGTT-CC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * * *
15542485 ATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAA
127 CTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15542550 TTAAAAACTTATTTACGTGCA-AA
191 TTAAAAACTTATTTACGTG-AGAA
* * * * * * * *
15542573 ATGTTTATATCTTGTTCTTGGATGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* *
15542638 TTCGGTTCGTAAGAGTATTCAAGACG----A-TCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15542698 GGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15542763 AAAACTTATTTACGTGAGAG
194 AAAACTTATTTACGTGAGAA
* * * *
15542783 TTGTTTCTCTCTTGCTTCTTGGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15542848 CATCGGTTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * *
15542911 CGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15542976 AAAAACTTTTTTACGT-AGGAA
193 AAAAACTTATTTACGTGA-GAA
* * * * * **
15542997 TTGTTTCTCTCTTGCTCTTGGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* *
15543062 TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * *
15543127 GGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15543192 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * ** * ** * * *
15543212 TTGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * *
15543276 TTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTTCGAACATTCCATTCTC
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15543341 TGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15543406 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * * * ** * *
15543426 TTCTTTTTCTCTTCGTTCTTTGACGAAATTTTGAACTTGTCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * ** *
15543491 CTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAAAAATTTTTCGAACGTTCCATGCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* *
15543556 TCGGG-TATCGCATCATTTGGTCTAAAAG---G----TTTGT---CAACTTTTGGTCTGTGAATT
128 TCGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* *
15543610 AAAAACTTATTTACGTGGGAG
193 AAAAACTTATTTACGTGAGAA
* * * *
15543631 TTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* ** * *
15543696 CATCGGTTCCCGT-GAGTATTCAAGTTGATCCATTCCTTCAACCAAATTTTC-ACACATTCCATG
65 CTTCGGTT-CC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * * * * *
15543759 ATCGGGAAATCGCATCATATGGTCCTAATAGTTGGTCATTTCGGAAACAACTTTTGGTCCTTGAA
127 CTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15543824 TTAAAAACTTATTTACGTGCA-AA
191 TTAAAAACTTATTTACGTG-AGAA
* * * * * * *
15543847 TTGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
*
15543912 TTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15543977 GGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15544042 AAAACTTATTTACGTGAGAG
194 AAAACTTATTTACGTGAGAA
* * * * * *
15544062 TTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15544127 CATCGGTTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * * *
15544190 CGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15544255 AAAAACTTTTTTACGT-AGGAA
193 AAAAACTTATTTACGTGA-GAA
* * * * * **
15544276 TTGTTTCTCTCTTGCTCTTGGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * *
15544341 TTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * *
15544406 GGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15544471 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * ** * ** * * *
15544491 TTGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * *
15544555 TTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCTC
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15544620 TGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15544685 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * * * ** * *
15544705 TTCTTTTTCTCTTCGTTCTTTGACGAAATTTTGAACTTGTCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15544770 CTTCGATTCCTTTA-AGTATTCAAGACGATCCCTTCCTTCGA-AAATTTTTCGAACGTTCCATGC
65 CTTCGGTTCC--TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * *
15544833 TTCGGG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTGTGAA
128 -TCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
15544897 TTAAAAACTTATTTACGTGGGAG
191 TTAAAAACTTATTTACGTGAGAA
* * * *
15544920 TTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* ** * *
15544985 CATCGGTTCCGT-GAGTATTCAAGTTGATCCATTCCTTCAACCAATTTTTC--ACATTCCATGAT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * *
15545047 CGGGAAATCGCATCATATGGTCCTAATAGTTGGTCATTTCAG-AAACAACTTTTGGTCCTTGAAT
129 CGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTT-TGTAAACAACTTTTGGTCTTTGAAT
15545111 TAAAAACTTATTTACGTGCA-AA
192 TAAAAACTTATTTACGTG-AGAA
* * * * * * *
15545133 TTGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
*
15545198 TTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTC-AACATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15545262 GGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15545327 AAAACTTATTTACGTGAGAG
194 AAAACTTATTTACGTGAGAA
* * * *
15545347 TTGTTTCTCTCTTG--C-T---T---CTT-CGAACATGTCAAACATTTACAAGTTCTTTTGTAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * *
15545402 ATCGGTTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGATC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * * * * *
15545465 GGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15545530 AAAACTTTTTTACGT-AGGAA
194 AAAACTTATTTACGTGA-GAA
* * * ** * **
15545550 TTGTTTCTCTCTTGCTCTTGGATTAACTTTTGAACTTTTCAAATTTTTACGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* *
15545615 TTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGACCATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * *
15545680 GGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15545745 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * ** * ** * * *
15545765 TTG-CT-TCTCTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * *
15545828 TTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAA-TTTTCGAACATTCCATTCTC
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15545892 TGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15545957 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * * * * * *
15545977 TTCTTTTTCTCTTCGTTCTTTGACGAAATTTCGAACTTGTCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15546042 CTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGA-AAATTTTTCGAACGTTCCATGCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* * *
15546106 TCGGG-TATCGCATCATTTGGTCTAAAA-------AGTTTGT---CAACTTTTGGTCTGTGAATT
128 TCGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* *
15546160 AAAAACTTATTTACGTGGGAG
193 AAAAACTTATTTACGTGAGAA
* * * *
15546181 TTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTC-TTT-TAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * ** * *
15546244 CATCAGTTCCCGT-GAGTATTCAAGTTGATCCATTCCTTC-AACAAATTTTC-ACACATTCCATG
65 CTTCGGTT-CC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * * * *
15546306 ATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTCAGGAAACAACTTTTGGTCCTTGA
127 CTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTT-TGTAAACAACTTTTGGTCTTTGA
15546371 ATTAAAAACTTATTTACGTGCA-AA
190 ATTAAAAACTTATTTACGTG-AGAA
* * * * * * *
15546395 TTGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
*
15546460 TTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15546525 GGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15546590 AAAACTTATTTACGTGAGAG
194 AAAACTTATTTACGTGAGAA
* * * * * *
15546610 TTG-TTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15546674 CATCGG-TCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * *
15546736 CGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15546801 AAAAACTTTTTTACGT-AGGAA
193 AAAAACTTATTTACGTGA-GAA
* * * * * **
15546822 TTGTTTCTCTCTTGCTCTTGGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * *
15546887 TTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * *
15546952 GGGAAATCGCACCATTTGATCTAAAAAGTTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATT
130 GGGAAATCGCATCATTTGGTCT-AAAAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15547017 AAAAACTTATTTACGTGAGAA
193 AAAAACTTATTTACGTGAGAA
* * ** * ** * * *
15547038 TTGCTTCTCT-TGGTT-TTAAATGAACTT-CGAACCAGTGAAACATTTACAACTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * *
15547100 TTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTTCGAACATTCCATTCTC
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15547165 TGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15547230 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * * * * * *
15547250 TTCTTTTTCTCTTCGTTCTTTGACG-AATTTCGAACTTGTCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15547314 CTTCGATTCCTTTA-AGTATTCAAGACGATCCCTTCCTTCGA--AATTTTTCGAACGTTCCATGC
65 CTTCGGTTCC--TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * *
15547376 TTCGGG-TATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTGTGAAT
128 -TCGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* *
15547440 TAAAAACTTATTTACGTGGGAG
192 TAAAAACTTATTTACGTGAGAA
* *
15547462 TTG-TT-TCTC-T-TTCTTGGATGAAA--CCTGAACTCGTCAAACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCC-GAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15547521 CATCGGTTCCCGT-GAGTATTCAAGATGATCCATTCCTTCAACCAATTTTTC-ACACATTCCATG
65 CTTCGGTT-CC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * *
15547584 ATCGGGAAATCGCATCATTT-GTCCTAATAGTTGGTCATTTTG-AAACAACTTTTGGTCCTTGAA
127 CTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15547647 TTAAAAACTTATTTACGTGCA-AA
191 TTAAAAACTTATTTACGTG-AGAA
* * * * * * *
15547670 -TGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
*
15547734 TTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAA-TTTTCGAACATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15547798 GGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15547863 AAAACTTATTTACGTGAGAG
194 AAAACTTATTTACGTGAGAA
* * * * * *
15547883 TTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * *
15547948 CATCGGTTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTC-AAAAATCCATGAT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * *
15548011 CGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15548076 AAAAACTTTTTTACGT-AGGAA
193 AAAAACTTATTTACGTGA-GAA
* * * * * ** *
15548097 TTGTTTCTCTCTTGCTCTTGGATTAACTTTCTGAACTTTTCAAATTTTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGTTCTTGGATGAA-ATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
*
15548162 CTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGACCATTCCATGCT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15548227 CGGGAAATCGCATCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATGAATT
129 CGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15548292 AAAAACTTATTTACGTGAGAA
193 AAAAACTTATTTACGTGAGAA
* * ** * ** * * *
15548313 TTGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * *
15548377 TTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACA-TCCATTCTC
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15548441 --TAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15548504 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* **
15548524 TTGTTTCTCT-TGGTTCTTTGGATGAAATTCCGAACCAGTCAAACATTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGTTC-TTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* *
15548588 CTTC-GTTCCTTTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATTCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
15548652 CGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
129 CGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15548717 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * *
15548737 TT-TTTTTCTCTTGGTTCTTTGATGAAATTTCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15548800 CTTCGTTTCCTAAAGTATTCAAGACGATCCCTTCCTTC-A-AAAATTTTCGAACATTCCATGCTT
65 CTTCGGTTCCTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-T
* *
15548863 C-GGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCCTTGAATT
129 CGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15548927 AAAAAACTTATTTACGTG-GAG
193 -AAAAACTTATTTACGTGAGAA
* * *
15548948 TTGTTTCTCTCTT-TCTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTT-TAA
1 TTGTTTCTCTCTTGT-TCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTAT-A
* * *
15549011 ACATCGTTTCCGT-GAGTATTCAAGACGATCCATTCCTTC-ACCAAATTTTC-ACACATTCCATG
64 ACTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * * *
15549073 ATCGGGAAATCGCATCATATGGTCCTAATAGTTGGTCATTTTGGAAACAACTTTTGGTCTTTGAA
127 CTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15549138 TTAAAAACTTATTTACGTGCA-AA
191 TTAAAAACTTATTTACGTG-AGAA
* * * * * * *
15549161 TTTTTTATCTCTTGTTCTTGGACGAACTTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGTTCTTGGATGAA-ATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
15549226 CTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15549291 CGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGGAAACAACTTTTGGACTTTGAATT
129 CGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15549356 AAAAACTTATTTACGTGAGAG
193 AAAAACTTATTTACGTGAGAA
* * *
15549377 TTGTTTCTCTCTTGCTTCTT-GACGAAATTCCAAACTTGTCAAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15549441 CATCGGTTCCTGTGAGT-TTCAAGACGATCCATTCCTTCGACCAATTTTTCCGAACA-TCCATGA
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTT-CGAACATTCCATGC
* * * *
15549504 TCGGGAAATCGCATCAGTT-GTCTAAATAGTTTATCATTGTGGAAACAACTTTTGGTCTTTGAAT
128 TCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15549568 TAAAAACTTTTTTACGT-AGGAA
192 TAAAAACTTATTTACGTGA-GAA
* * * * * *
15549590 TTGTTTCTCTCTTGCTCTTGGATTAACTTCTGAACTTTTCAAA-TTTTACGAG-TCTTTTTATAA
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTC-TTTTATAA
* *
15549653 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACC-ATTTTTCGACCATTCCATTCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * *
15549717 CGGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATT
129 CGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15549782 AAAAACTTATTTACGTGAGAA
193 AAAAACTTATTTACGTGAGAA
* * ** * ** * *
15549803 TTGCTTCTCT-TGGTTCTTTAAATGAACTTCCGAACCAGTGAAACATTTAC-A-ATCTTTTATAA
1 TTGTTTCTCTCTTGTTC-TTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15549865 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCGAACAATCCATTCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * *
15549930 CTGGAAGTCGCATCATTTGGTCTAAAGGTTTGTCATTTTGCAAACAACTTTTGGTC-TTGAATTA
129 CGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* *
15549994 AAAACTTATTTACGTGGGAG
194 AAAACTTATTTACGTGAGAA
* * * *
15550014 TTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * ** * *
15550079 CATCGATTCCCGT-GAGTATTCAAGTTGATCCATTCCTTCAACCAAATTTTC-ACACATTCCATG
65 CTTCGGTT-CC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * * * *
15550142 ATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTCGGAAACAACTTTTGGTCCTTGAA
127 CTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15550207 TTAAAAACTTATTTACGTGCA-AA
191 TTAAAAACTTATTTACGTG-AGAA
* * * * * *
15550230 TTG-TTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC-TTTATGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
*
15550293 TTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15550358 GGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15550423 AAAACTTATTTACGTGAGAG
194 AAAACTTATTTACGTGAGAA
* * * * * *
15550443 TTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15550508 CATCGGTTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * * *
15550571 CGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15550636 AAAAACTTTTTTACGT-AGGAA
193 AAAAACTTATTTACGTGA-GAA
* * * * * *
15550657 TTGTTTCTCTCTTGCTCTTGGATTAACTTCTGAACTTTTCAAA-TTTTACGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* *
15550721 TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * *
15550786 GGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15550851 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * ** * ** * * *
15550871 TTGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * *
15550935 TTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTTCGAACATTCCATTCTC
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15551000 TGGAAGTCGCATCATTTGGTCTAAAAGGTTT-TCATTTTGTAAACAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15551064 AAAACTTATTTACGT--GAA
194 AAAACTTATTTACGTGAGAA
* * * * * *
15551082 TTCTTT-TCTCTTGGTTCTTTGACGAAATTTCGAACTTGTCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * ** *
15551146 CTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCAAAAAATTTTTCGAACGTTCCATGCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* *
15551211 TCGGG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTC-TTGAAT
128 TCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* *
15551274 TAAAAACTTATTTACGTGGGAG
192 TAAAAACTTATTTACGTGAGAA
* * * * *
15551296 TTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTTTTAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * ** * *
15551361 CATCAGTTCCCGT-GAGTATTCAAGTTGATCCATTCCTTCAACCAAATTTTC-ACACATTCCATG
65 CTTCGGTT-CC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * * * * *
15551424 ATCGGGAAATCGCATCATATGGTCCTAATAGTTGGTCATTTCGGAAACAACTTTTGGTCCTTGAA
127 CTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15551489 TTAAAAACTTATTTACGTGCA-AA
191 TTAAAAACTTATTTACGTG-AGAA
* * * * * * *
15551512 TTGTTTATATCTTGTTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
*
15551577 CTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAA-TTTTCGAACATTCCATGCT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15551641 CGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
129 CGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15551706 AAAAACTTATTTACGTGAGAG
193 AAAAACTTATTTACGTGAGAA
* * * * * *
15551727 TTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15551792 CATCGGTTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * * *
15551855 CGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15551920 AAAAACTTTTTTACGT-AGGAA
193 AAAAACTTATTTACGTGA-GAA
* * * * * **
15551941 TTGTTTCTCTCTTGCTCTTGGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
*
15552006 TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGACCATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * *
15552071 GGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTAT-AAATA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15552135 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * ** * ** * * *
15552155 TTGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * * *
15552219 TTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTTCGAACAATCCATTCTC
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * *
15552284 TGGAAGTCGCATCATTTGGTC-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTGTTGTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTT-TGAATTA
*
15552348 AAAACTTATTTACGTG-GAG
194 AAAACTTATTTACGTGAGAA
* * * *
15552367 TTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTC-TTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * ** * *
15552432 CATCGATTCCCGT-GAGTATTCAAGTTGATCCATTCCTTCAACCAAATTTTC-ACACATTCCATG
65 CTTCGGTT-CC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATG
* * * * *
15552495 ATC-GGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTCG-AAACAACTTTTGGTCCTTGAA
127 CTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15552558 TTAAAAACTTATTTACGTGCA-AA
191 TTAAAAACTTATTTACGTG-AGAA
* * * * * * *
15552581 TTGTTTATATCTTGTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
*
15552646 TTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15552711 GGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15552776 AAAACTTATTTACGTGAGAG
194 AAAACTTATTTACGTGAGAA
* * * * * *
15552796 TTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAA
1 TTGTTTCTCTCTTG-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15552861 CATCGGTTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATGAT
65 CTTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * * * * *
15552924 CGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15552989 AAAAACTTTTTTACGT-AGGAA
193 AAAAACTTATTTACGTGA-GAA
* * * * * **
15553010 TTGTTTCTCTCTTGCTCTTGGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
*
15553075 TTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGACCATTCCATGCTC
66 TTCGGTTCCT-AGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* * * * *
15553140 GGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATTA
130 GGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
15553205 AAAACTTATTTACGTGAGAA
194 AAAACTTATTTACGTGAGAA
* * ** * ** * *
15553225 TTGCTTCTCT-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAAC
1 TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
* * * *
15553289 TTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAA-TTTTCGAACATTCCATTCTC
66 TTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC
* *
15553353 TGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
*
15553418 AAAACTTATTTACGTGAAAA
194 AAAACTTATTTACGTGAGAA
* * * * * * *
15553438 TTCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGTCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTT-GTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * **
15553503 CTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAGAAATTTTTCGAACATTCCATGCT
65 CTTCGGTTCC-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* *
15553568 TCGGG-TATCGCATTATTTGGTCTAAAA
128 TCGGGAAATCGCATCATTTGGTCTAAAA
15553595 AAAAGTTATC
Statistics
Matches: 14557, Mismatches: 2360, Indels: 991
0.81 0.13 0.06
Matches are distributed among these distances:
201 7 0.00
202 64 0.00
203 120 0.01
204 264 0.02
205 206 0.01
206 13 0.00
207 134 0.01
208 122 0.01
209 136 0.01
210 414 0.03
211 682 0.05
212 1792 0.12
213 3118 0.21
214 3113 0.21
215 2771 0.19
216 1458 0.10
217 85 0.01
218 58 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (213 bp):
TTGTTTCTCTCTTGTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
TTCGGTTCCTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCG
GGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
AACTTATTTACGTGAGAA
Found at i:15537538 original size:214 final size:215
Alignment explanation
Indices: 15535968--15553595 Score: 19270
Period size: 214 Copynumber: 82.7 Consensus size: 215
15535958 TACGGGGGAG
* * * * *
15535968 TTGTTTCTCT-TT-TTTCTTGGATGAAATTTCGAACTCGTTAAACATGTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * *
15536031 CATCGGTTCCGT-GAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCATGA
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCATGC
* * * *
15536094 TCGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAA
130 TCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15536158 TTAAAAACTTATTTACGTGCAAA
194 TTAAAAACTTATTTACGTG-AGA
* * * * * * * * *
15536181 ATGTTTATATCTTG-TTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* ** * *
15536245 CTTCTGTTTGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15536310 CGGGAAATCGCATCATTTGGACTAAAAA-TTTGTCA-TTTGTAAACAACTTTTGGACTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15536373 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
** * * * *
15536393 GTTGTTTCTCTCTTG-TTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15536457 ACATCGATTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * *
15536519 ATCGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCA-TGTGGAAATAACTTTTGGTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15536583 TTAAAAACTT-TTTACGTGAGAA
194 TTAAAAACTTATTTACGTGAG-A
* * ** * ** * *
15536605 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
** * * * *
15536668 CTTTAGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15536733 CTGGAAGTCGCATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTC-TTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15536797 AAAAACTTATTTACGTGATAA
196 AAAAACTTATTTACGTGA-GA
* * * * * * * *
15536818 TTCTTTTTCTCTTGGTTCTT-GACGAAATTTCGAACTTGTCAAACTTTTAAGAGATCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * **
15536882 CTTC-GATCCTTA-A-AATTCAAGACAAT-CATTCCTTCGAGAAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15536943 --GG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTGTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15537005 AAAAACTTATTTACGTGGGA
196 AAAAACTTATTTACGTGAGA
* * * *
15537025 GTTGTTTCTCTCTTTCTTCTTGGATGAAATTCCGAACTCGTCAAACATGTACGAGTTTTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15537090 ACATCGGTTCCTGT-GAGTATTCAAGATGATCCATTCCTTCAACCAATTTTTC-ATACATTCCAA
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCAT
* * * * *
15537153 GCTCGGGAAAT--CATCATATGGTCCT-AATAGTTTGTCA-TTTGGAAGCAAC-TTTGGTCCTTG
128 GCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
15537213 AATTAAAAACTTATTTACGTGCA-A
192 AATTAAAAACTTATTTACGTG-AGA
* * * * * *
15537237 CTTGTTTATATCTT-CTTCTTGGATGAACTT-TGAACTTGTCAAAC-CTTATGAGTTCTTTTCAT
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTT-AT
* * *
15537299 AACTTCGGTTCCTAAGAGTATTCAAGAAGATCCATTCCTTAGACCAATTTTTCGAACATTCCATG
64 AACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * *
15537364 CTTGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15537429 TT-AAAACTTATTTACGTGAGA
194 TTAAAAACTTATTTACGTGAGA
* * * * *
15537450 GTGTTTCTCTCTTGCTTCTTGGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15537515 CTTCTGTTCCTTAGAGTATTCAAGACG-TCCATTCCATCGATCAATTTTCCGAACATTCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15537579 CTGGAAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
131 CGGGAAA-TCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15537644 TAAAAACTTATTTACGTGAAA
195 TAAAAACTTATTTACGTGAGA
* * * * * * * * * * *
15537665 ATCTTTTTCTCTTGGTTCTTTGACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * *
15537730 CTTCGATTCCTTAAAGTATTCAAGATGATCCCTTCCTTCGA-GAAATTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* * * *
15537794 TCGGG-TATCGCAT-A-TTGGTCTAAAAAG-TTATCATTTTGCAAACAACTTTTGGTCTGTGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* *
15537855 TAAAAACTTATTTACGGGGGA
195 TAAAAACTTATTTACGTGAGA
* * * *
15537876 GTTGTTTCTCTCTTTCTTCTTGGATGAAATTTCGAACTCGTCAAACATGTACGAGTTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * * *
15537941 ACATCGGTTCCCGT-GAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCAT
65 ACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCAT
* * * * *
15538004 GATCGGGAAATCGATCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCT
128 GCTCGGGAAATCG--CATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
*
15538068 TGAATTAAAAACTTATTTACGTGCAAA
190 TGAATTAAAAACTTATTTACGTG-AGA
* * * * * ** * * *
15538095 ATGTTTATATCTTG---CTTGGACGAACTTTTGAACTTGTCAAACCTTTATGAGTTCTTTCATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15538157 CTTCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15538222 CGGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15538287 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
* * * *
15538307 GTTCTTTCTCTCTTGCTTCTTGGACGAAATTCC-AAATATGTCAAACATTTACAAGTTCTTCTTA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACT-TGTCAAACATTTACGAGTTCTT-TTA
*
15538371 TAACATCGGTTCCTGT-GAGT-TTCAAGACGATCCA--CCTTCGACCAATTTTTCGAA-A-TCCA
63 TAACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCA
* * * * * * * *
15538430 TGATCGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTT-GTCTTTG
127 TGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
*
15538494 AATTAAAAACTTTTTTACGT-AGGAA
192 AATTAAAAACTTATTTACGTGA-G-A
* * * * * * **
15538519 TTGTTTCTCTCTTG--TCCTAGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15538582 CTTCGG-TCCTGAGAGTATTCAACACGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * *
15538646 CGGGAAATCGCACCATTTGATCTAAAAAGGTT-TCATTTTGTAAAAACAACTTTTGGTCTATAAA
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAA
15538710 TTAAAAACTTATTTACGTGAGAA
194 TTAAAAACTTATTTACGTGAG-A
* * ** * ** * *
15538733 TTG-CT-TCTCTTGGTTCTTCAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * * *
15538796 CTTCTGTTCCTTAGAGTTTTCAAGGCGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15538861 CTGGAAGTCGCATCATTTGGTCT-AAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15538925 AAAAACTTATTTACGTGAAAA
196 AAAAACTTATTTACGTG-AGA
* * * * * * * *
15538946 TTCTTTTTCTC-TGGTTCTTTGACGAAATTTCGAACTTGTCCAAACTTTTACGAGATCTTTTATA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGT-CAAACATTTACGAGTTCTTTTATA
* * * * ** *
15539010 ACTTCGATTCCTTAAAGTATTCAAGATGATCCCTTCCTTCGAGAAATTTCTCGAACATTCCATGG
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCAT-G
* ** * * * * *
15539075 TTC-GGTTATCGCATTAGTTGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTATGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
15539139 TTAAAAACTTATTTACGGGGGA
194 TTAAAAACTTATTTACGTGAGA
* * * * * *
15539161 GTTGTTTCTCTCTTTCTTCTTGGACGAAATTCCGAACTCGTCAAACATGTGCGAGGTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * * * * *
15539226 ACATCAGTTCCCGT-GAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-TACATTCCATG
65 ACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * *
15539289 ATCGGTAGATCGCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGA
129 CTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
*
15539353 ATTAAAAACTTATTTACGTGCAAA
193 ATTAAAAACTTATTTACGTG-AGA
* * * * * * * * *
15539377 ATGTTTATATCTTG-TTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15539441 CTTCGGTTCGTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* **
15539506 CGGGAAATCGCATCATTTGGACT--AAAGTTTGTCATTTTGTAAACAACTTTTGGAGTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15539569 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
** * * * *
15539589 GTTGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15539654 ACATCGATTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * * *
15539716 ATC-GGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15539780 TTAAAAACTT-TTTACGT-AGGAA
194 TTAAAAACTTATTTACGTGA-G-A
* * * * * *
15539802 TTGTTTCTCTCTTTG-TCCTAT--ATTAACTTCTGAACTTTTCAAA-TTTTACGAGTTCTTTTAT
1 TTGTTTCTCTC-TTGCTTCT-TGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTAT
* * * * *
15539863 AACTTCGGTTCCTGAGAGTATTCAACACGATCCATTCCTTCAACCAATTTTCCGACCATTCCATG
64 AACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * *
15539928 CTCGGGAAATCACACCATTTGATCTAGAAAGTTT-TCATTCTGTAAACAACTTTTGGTCTATAAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
15539992 TTAAAAACTTATTTACGTGAGAA
194 TTAAAAACTTATTTACGTGAG-A
* ** * ** * *
15540015 TTG-TT-TCTCTTGGTTCTTACATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15540078 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15540143 CTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15540208 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* * * * * * * * * *
15540229 TTCTTTTTCTCTTGGTTCTTTGACGAAATTTCAAACTTGCCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * * *
15540294 CTTCGATTCCTTAAAGTATTCCAGACGATCCCTTCCTTCGA-GAAATTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* * * *
15540358 TCGGG-TATCGCAT-A-TTGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTGTGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* *
15540420 TAAAAACTTATTTACGGGGGA
195 TAAAAACTTATTTACGTGAGA
* * * *
15540441 GTTGTTTCTCTCTTTCTTCTTGGATGAAATT-TGAACTCGTCAAACATGTACGAGTTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15540505 ACATCGGTTCCCGT-GAGTATTCAAGATGATCCATTCCTTCAACCAATTTTTC-ATACATTCCAT
65 ACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCAT
* * * * *
15540568 GATCGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTG
128 GCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
*
15540632 AATTAAAAACTTATTTACGTGCAAA
192 AATTAAAAACTTATTTACGTG-AGA
* * * * * * *
15540657 ATGTTTATATCTTG-TTCTTGGA-CAAACTTTCGAACTTGTCAAAC-TTTATGAGTTCTTTCATA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAA-TTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * * *
15540719 ACTTCGGTTCGTAAGAGTATTCAAGATGATCCATTCCTTAGACCAATTTTTCGAACATTTCATGC
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * *
15540784 T-GGGAAATCGCATCATTTGGACT-AAAAGTTTTTCATTTTGTAAACAACTTTTGGACTTTGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
15540847 TAAAAACTTATTTACGTGAGA
195 TAAAAACTTATTTACGTGAGA
* * * *
15540868 GTTGTTTCTCTCTTGCTTCTTGGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15540933 ACATCGGTTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * * *
15540995 ATCGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15541060 TTAAAAACTTTTTTACGT-AGGAA
194 TTAAAAACTTATTTACGTGA-G-A
* * ** * * **
15541083 TTGTTTCTCTCTTGC-TCCTGGATTAGCTT-TGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15541146 CATCGGTTCCCGT-GAGTATTCAAGATGATCCATT-CTATCAACCAATTTTTC-ATACATTCTAT
66 CTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCT-TCGACCAATTTTTCGA-ACATTCCAT
* * * * * * *
15541208 GGTCAGGAAATCGCATCATATGGTCCAAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGA
128 GCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
15541273 ATTAAAAACTTATTTACGTGCA-A
193 ATTAAAAACTTATTTACGTG-AGA
* * * * *
15541296 CTTGTTTATATCTTG-TTCTTGGATGAACTTTCGAACTTG------A--T--GAGTTCTTTCATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15541350 ACTTCGGTTCCTAAGAGTATTC-AGACGATCCATTCTTTAGACCAATTTTTCGAACATTCCATTC
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* *
15541414 TCGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
15541479 TAAAAACTTATTTACGTGAGA
195 TAAAAACTTATTTACGTGAGA
* * * * *
15541500 GTTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15541565 ACATCGGTTCCTGT-GAGTTTTCAAGATGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * * * *
15541627 ATCGGGAAATCGCATCAGTTGGTCTAAATAGTTTATTAATGTGGAAATAACTTTTGGTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15541692 TTAAAAACTTTTTTACGT-AGGAA
194 TTAAAAACTTATTTACGTGA-G-A
* * * * ** *
15541715 TTGTTTCTCTCTTGC-TCTTGGATTAACTT-TGAACTTTTCAAATTTTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15541778 CTTCGGTTCCTAAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * *
15541843 CGGGAAATCGCACCATTTGATCTAAAAAATTT-TCATTTTGTAAACAACTTTTGGTCTATAAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15541907 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
* * ** * * ** * *
15541927 --ATTTCTTCTCTTGGTTCTTAAATGAACTTCTGAACCAGTGAAACATTTACAAGTTCTTTTATA
1 TTGTTTC-TCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15541990 ACTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTTCGAACATTCCATTC
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * *
15542055 TCTGGAAGTCGCATCATTTGGTCT-AAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15542119 TAAAAACTTATTTACGTGAAAA
195 TAAAAACTTATTTACGTG-AGA
* * * * * * * * *
15542141 TTCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGCCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * **
15542206 CTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCAAGAAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* * * * *
15542271 TCGGG-TATCGCATTATTTGGTCTAAAAAGTTTATCATTTTGCAAACAACTTTTGGTCTGTGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* *
15542335 TAAAAACTTATTTACGGGGGA
195 TAAAAACTTATTTACGTGAGA
* * *
15542356 GTTGTTTCTCTCTTTCTTCTTGGATGAAATTCCGAACTCGTCAAACATGTACGAGTTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * * *
15542421 ACATCGGTTCCCGT-GAGTATTCAAGATGATCCATTCCATCAACCAATTTTTC-ATACATTCCAT
65 ACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCAT
* * * * *
15542484 GATCGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTG
128 GCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
*
15542548 AATTAAAAACTTATTTACGTGCAAA
192 AATTAAAAACTTATTTACGTG-AGA
* * * * * * * *
15542573 ATGTTTATATCTTG-TTCTTGGATGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTCATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15542637 CTTCGGTTCGTAAGAGTATTCAAGACG----A-TCCTTAGACCAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15542697 CGGGAAATCGCATCATTTGGACTAAAAATTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15542762 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
* * * *
15542782 GTTGTTTCTCTCTTGCTTCTTGGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15542847 ACATCGGTTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * * * *
15542909 ATCGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15542974 TTAAAAACTTTTTTACGT-AGGAA
194 TTAAAAACTTATTTACGTGA-G-A
* * * * **
15542997 TTGTTTCTCTCTTGC-TCTTGGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15543061 CTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * *
15543126 CGGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15543191 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* * ** * ** * * *
15543212 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15543275 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTTCGAACATTCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15543340 CTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15543405 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* * * * ** * *
15543426 TTCTTTTTCTCTT-CGTTCTTTGACGAAATTTTGAACTTGTCAAACTTTTACGAGATCTTTTATA
1 TTGTTTCTCTCTTGC-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * ** *
15543490 ACTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAAAAATTTTTCGAACGTTCCATGC
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* *
15543555 TTCGGG-TATCGCATCATTTGGTCT-AAAAG---G----TTTGT---CAACTTTTGGTCTGTGAA
130 -TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15543608 TTAAAAACTTATTTACGTGGGA
194 TTAAAAACTTATTTACGTGAGA
* * * *
15543630 GTTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * ** * *
15543695 ACATCGGTTCCCGT-GAGTATTCAAGTTGATCCATTCCTTCAACCAAATTTTC-ACACATTCCAT
65 ACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCAT
* * * * * * *
15543758 GATCGGGAAATCGCATCATATGGTCCT-AATAGTTGGTCATTTCGGAAACAACTTTTGGTCCTTG
128 GCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
*
15543822 AATTAAAAACTTATTTACGTGCAAA
192 AATTAAAAACTTATTTACGTG-AGA
* * * * * * *
15543847 TTGTTTATATCTTG-TTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* *
15543911 CTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15543976 CGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15544041 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
* * * * * *
15544061 GTTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15544126 ACATCGGTTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * * * * *
15544188 ATCGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15544253 TTAAAAACTTTTTTACGT-AGGAA
194 TTAAAAACTTATTTACGTGA-G-A
* * * * **
15544276 TTGTTTCTCTCTTGC-TCTTGGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15544340 CTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * *
15544405 CGGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15544470 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* * ** * ** * * *
15544491 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15544554 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACATTCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15544619 CTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15544684 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* * * * ** * *
15544705 TTCTTTTTCTCTT-CGTTCTTTGACGAAATTTTGAACTTGTCAAACTTTTACGAGATCTTTTATA
1 TTGTTTCTCTCTTGC-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15544769 ACTTCGATTCCTTTA-AGTATTCAAGACGATCCCTTCCTTCGA-AAATTTTTCGAACGTTCCATG
65 ACTTCGGTTCC-TTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * *
15544832 CTTCGGG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTGTGA
129 C-TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
*
15544896 ATTAAAAACTTATTTACGTGGGA
193 ATTAAAAACTTATTTACGTGAGA
* * * *
15544919 GTTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * ** * *
15544984 ACATCGGTTCCGT-GAGTATTCAAGTTGATCCATTCCTTCAACCAATTTTTC--ACATTCCATGA
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * * * *
15545046 TCGGGAAATCGCATCATATGGTCCT-AATAGTTGGTCATTTCAG-AAACAACTTTTGGTCCTTGA
130 TCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTT-TGTAAACAACTTTTGGTCTTTGA
*
15545109 ATTAAAAACTTATTTACGTGCAAA
193 ATTAAAAACTTATTTACGTG-AGA
* * * * * * *
15545133 TTGTTTATATCTTG-TTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* *
15545197 CTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTC-AACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15545261 CGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15545326 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
* * *
15545346 GTTGTTTCTCTCTTGCTTC----------TT-CGAACATGTCAAACATTTACAAGTTCTTTTGTA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15545400 ACATCGGTTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * * * * *
15545462 ATCGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15545527 TTAAAAACTTTTTTACGT-AGGAA
194 TTAAAAACTTATTTACGTGA-G-A
* * ** * **
15545550 TTGTTTCTCTCTTGC-TCTTGGATTAACTTTTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15545614 CTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGACCATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * *
15545679 CGGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15545744 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* * ** * ** * * *
15545765 TTG-CT-TCTC-TGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15545827 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAA-TTTTCGAACATTCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15545891 CTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15545956 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* * * * * * *
15545977 TTCTTTTTCTCTT-CGTTCTTTGACGAAATTTCGAACTTGTCAAACTTTTACGAGATCTTTTATA
1 TTGTTTCTCTCTTGC-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * * *
15546041 ACTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGA-AAATTTTTCGAACGTTCCATGC
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* *
15546105 TTCGGG-TATCGCATCATTTGGTCTAAAAA----G----TTTGT---CAACTTTTGGTCTGTGAA
130 -TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15546158 TTAAAAACTTATTTACGTGGGA
194 TTAAAAACTTATTTACGTGAGA
* * * *
15546180 GTTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTC-TTT-TA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * ** * *
15546243 ACATCAGTTCCCGT-GAGTATTCAAGTTGATCCATTCCTTC-AACAAATTTTC-ACACATTCCAT
65 ACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCAT
* * * * * *
15546305 GATCGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTCAGGAAACAACTTTTGGTCCTT
128 GCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTT-TGTAAACAACTTTTGGTCTTT
*
15546369 GAATTAAAAACTTATTTACGTGCAAA
191 GAATTAAAAACTTATTTACGTG-AGA
* * * * * * *
15546395 TTGTTTATATCTTG-TTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* *
15546459 CTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15546524 CGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15546589 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
* * * * * *
15546609 GTTG-TTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15546673 ACATCGG-TCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * * * *
15546734 ATCGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15546799 TTAAAAACTTTTTTACGT-AGGAA
194 TTAAAAACTTATTTACGTGA-G-A
* * * * **
15546822 TTGTTTCTCTCTTGC-TCTTGGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15546886 CTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * *
15546951 CGGGAAATCGCACCATTTGATCTAAAAAGTTTTTTCATTTTGTAAACAACTTTTGGTCTATAAAT
131 CGGGAAATCGCATCATTTGGTCTAAAAAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
15547016 TAAAAACTTATTTACGTGAGAA
195 TAAAAACTTATTTACGTGAG-A
* * ** * ** * * *
15547038 TTG-CT-TCTCTTGGTT-TTAAATGAACTT-CGAACCAGTGAAACATTTACAACTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15547099 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTTCGAACATTCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15547164 CTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15547229 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* * * * * * *
15547250 TTCTTTTTCTCTT-CGTTCTTTGACG-AATTTCGAACTTGTCAAACTTTTACGAGATCTTTTATA
1 TTGTTTCTCTCTTGC-TTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15547313 ACTTCGATTCCTTTA-AGTATTCAAGACGATCCCTTCCTTCGA--AATTTTTCGAACGTTCCATG
65 ACTTCGGTTCC-TTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * *
15547375 CTTCGGG-TATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTGTGA
129 C-TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
*
15547438 ATTAAAAACTTATTTACGTGGGA
193 ATTAAAAACTTATTTACGTGAGA
* *
15547461 GTTG-TT-TCTC-T--TTCTTGGATGAAA--CCTGAACTCGTCAAACATGTACGAGTTCTTTTAT
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCC-GAACTTGTCAAACATTTACGAGTTCTTTTAT
* * * *
15547519 AACATCGGTTCCCGT-GAGTATTCAAGATGATCCATTCCTTCAACCAATTTTTC-ACACATTCCA
64 AACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCA
* * * *
15547582 TGATCGGGAAATCGCATCATTT-GTCCT-AATAGTTGGTCATTTTG-AAACAACTTTTGGTCCTT
127 TGCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
15547644 GAATTAAAAACTTATTTACGTGCA-A
191 GAATTAAAAACTTATTTACGTG-AGA
* * * * * * * *
15547669 ATGTTTATATCTTG-TTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* *
15547733 CTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAA-TTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15547797 CGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15547862 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
* * * * * *
15547882 GTTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15547947 ACATCGGTTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTC-AAAAATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * * *
15548009 ATCGGGAAATCGCATCAGTTGGTCTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15548074 TTAAAAACTTTTTTACGT-AGGAA
194 TTAAAAACTTATTTACGTGA-G-A
* * * * ** *
15548097 TTGTTTCTCTCTTGC-TCTTGGATTAACTTTCTGAACTTTTCAAATTTTTATGAGTTCTTTTATA
1 TTGTTTCTCTCTTGCTTCTTGGATGAA-ATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* *
15548161 ACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGACCATTCCATGC
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * *
15548226 TCGGGAAATCGCATCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
15548291 TAAAAACTTATTTACGTGAGAA
195 TAAAAACTTATTTACGTGAG-A
* * ** * ** * * *
15548313 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15548376 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCGAACA-TCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15548440 C--TAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15548503 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* **
15548524 TTG-TT-TCTCTTGGTTCTTTGGATGAAATTCCGAACCAGTCAAACATTTACGAGTTCTTTTATA
1 TTGTTTCTCTCTTGCTTC-TTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* *
15548587 ACTTC-GTTCCTTTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATTC
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
15548651 TCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
15548715 TAAAAACTTATTTACGTGAGAA
195 TAAAAACTTATTTACGTGAG-A
* * * *
15548737 TT-TTTTTCTCTTGGTTCTTTGATGAAATTTCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15548800 CTTCGTTTCC-TAAAGTATTCAAGACGATCCCTTCCTTC-A-AAAATTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* *
15548862 TC-GGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCCTTGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
15548926 TAAAAAACTTATTTACGTG-GA
195 T-AAAAACTTATTTACGTGAGA
* * * *
15548947 GTTGTTTCTCTCTTTC-TCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTT-TA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTAT-
* * * *
15549010 AACATCGTTTCCGT-GAGTATTCAAGACGATCCATTCCTTC-ACCAAATTTTC-ACACATTCCAT
64 AACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCAT
* * * * *
15549072 GATCGGGAAATCGCATCATATGGTCCT-AATAGTTGGTCATTTTGGAAACAACTTTTGGTCTTTG
128 GCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
*
15549136 AATTAAAAACTTATTTACGTGCAAA
192 AATTAAAAACTTATTTACGTG-AGA
* * * * * * *
15549161 TTTTTTATCTCTTG-TTCTTGGACGAACTTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATA
1 TTGTTTCTCTCTTGCTTCTTGGATGAA-ATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
*
15549225 ACTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * *
15549290 TCGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGGAAACAACTTTTGGACTTTGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
15549355 TAAAAACTTATTTACGTGAGA
195 TAAAAACTTATTTACGTGAGA
* * *
15549376 GTTGTTTCTCTCTTGCTTCTT-GACGAAATTCCAAACTTGTCAAACATTTACAAGTTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
*
15549440 ACATCGGTTCCTGT-GAGT-TTCAAGACGATCCATTCCTTCGACCAATTTTTCCGAACA-TCCAT
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTT-CGAACATTCCAT
* * * * * *
15549502 GATCGGGAAATCGCATCAGTT-GTCTAAATAGTTTATCATTGTGGAAACAACTTTTGGTCTTTGA
128 GCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
*
15549566 ATTAAAAACTTTTTTACGT-AGGAA
193 ATTAAAAACTTATTTACGTGA-G-A
* * * * *
15549590 TTGTTTCTCTCTTGC-TCTTGGATTAACTTCTGAACTTTTCAAA-TTTTACGAG-TCTTTTTATA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTC-TTTTATA
* *
15549652 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACC-ATTTTTCGACCATTCCATTC
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * * * *
15549716 TCGGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
15549781 TAAAAACTTATTTACGTGAGAA
195 TAAAAACTTATTTACGTGAG-A
* * ** * ** * *
15549803 TTG-CT-TCTCTTGGTTCTTTAAATGAACTTCCGAACCAGTGAAACATTTAC-A-ATCTTTTATA
1 TTGTTTCTCTCTTGCTTC-TTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * *
15549864 ACTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCGAACAATCCATTC
65 ACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
* * * *
15549929 TCTGGAAGTCGCATCATTTGGTCT-AAAGGTTTGTCATTTTGCAAACAACTTTTGGTC-TTGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15549992 TAAAAACTTATTTACGTGGGA
195 TAAAAACTTATTTACGTGAGA
* * * *
15550013 GTTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * ** * *
15550078 ACATCGATTCCCGT-GAGTATTCAAGTTGATCCATTCCTTCAACCAAATTTTC-ACACATTCCAT
65 ACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCAT
* * * * * *
15550141 GATCGGGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTCGGAAACAACTTTTGGTCCTTG
128 GCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
*
15550205 AATTAAAAACTTATTTACGTGCAAA
192 AATTAAAAACTTATTTACGTG-AGA
* * * * * *
15550230 TTG-TTATATCTTG-TTCTTGGACGAACTTTCGAACTTGTCAAAC-TTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* *
15550292 CTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15550357 CGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15550422 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
* * * * * *
15550442 GTTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15550507 ACATCGGTTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * * * * *
15550569 ATCGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15550634 TTAAAAACTTTTTTACGT-AGGAA
194 TTAAAAACTTATTTACGTGA-G-A
* * * * *
15550657 TTGTTTCTCTCTTGC-TCTTGGATTAACTTCTGAACTTTTCAAA-TTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * *
15550720 CTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGACCATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * *
15550785 CGGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15550850 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* * ** * ** * * *
15550871 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15550934 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTTCGAACATTCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15550999 CTGGAAGTCGCATCATTTGGTCTAAAAGGTTT-TCATTTTGTAAACAACTTTTGGTCTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15551063 AAAAACTTATTTACGTGA-A
196 AAAAACTTATTTACGTGAGA
* * * * * * *
15551082 TTCTTT-TCTCTTGGTTCTTTGACGAAATTTCGAACTTGTCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * ** *
15551146 CTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCAAAAAATTTTTCGAACGTTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* *
15551211 TCGGG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTC-TTGAAT
130 TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
15551274 TAAAAACTTATTTACGTGGGA
195 TAAAAACTTATTTACGTGAGA
* * * * *
15551295 GTTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTTTTA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * ** * *
15551360 ACATCAGTTCCCGT-GAGTATTCAAGTTGATCCATTCCTTCAACCAAATTTTC-ACACATTCCAT
65 ACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCAT
* * * * * * *
15551423 GATCGGGAAATCGCATCATATGGTCCT-AATAGTTGGTCATTTCGGAAACAACTTTTGGTCCTTG
128 GCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
*
15551487 AATTAAAAACTTATTTACGTGCAAA
192 AATTAAAAACTTATTTACGTG-AGA
* * * * * * * *
15551512 TTGTTTATATCTTGTTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* *
15551577 CTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAA-TTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15551641 CGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15551706 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
* * * * * *
15551726 GTTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15551791 ACATCGGTTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * * * * *
15551853 ATCGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15551918 TTAAAAACTTTTTTACGT-AGGAA
194 TTAAAAACTTATTTACGTGA-G-A
* * * * **
15551941 TTGTTTCTCTCTTGC-TCTTGGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* *
15552005 CTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGACCATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * *
15552070 CGGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTAT-AAAT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15552134 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* * ** * ** * * *
15552155 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * * *
15552218 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTTCGAACAATCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15552283 CTGGAAGTCGCATCATTTGGTC--AAAAGTTTGTCATTTTGTAAACAACTTTTGGTGTTGTGAAT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTT-TGAAT
15552346 TAAAAACTTATTTACGTG-GA
195 TAAAAACTTATTTACGTGAGA
* * * *
15552366 GTTGTTTCTCTCTTTCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACGAGTTCTTTTATA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * * ** * *
15552431 ACATCGATTCCCGT-GAGTATTCAAGTTGATCCATTCCTTCAACCAAATTTTC-ACACATTCCAT
65 ACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA-ACATTCCAT
* * * * *
15552494 GATC-GGAAATCGCATCATATGGTCCT-AATAGTTTGTCATTTCG-AAACAACTTTTGGTCCTTG
128 GCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
*
15552556 AATTAAAAACTTATTTACGTGCAAA
192 AATTAAAAACTTATTTACGTG-AGA
* * * * * * *
15552581 TTGTTTATATCTTG-TTCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* *
15552645 CTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* *
15552710 CGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15552775 AAAAACTTATTTACGTGAGA
196 AAAAACTTATTTACGTGAGA
* * * * * *
15552795 GTTGTTTCTCTCTTGCTTCTTCGACGAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTA
1 -TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
* * *
15552860 ACATCGGTTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTTCGAA-AATCCATG
65 ACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATG
* * * * * * * * * *
15552922 ATCGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAA
129 CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
15552987 TTAAAAACTTTTTTACGT-AGGAA
194 TTAAAAACTTATTTACGTGA-G-A
* * * * **
15553010 TTGTTTCTCTCTTGC-TCTTGGATTAACTTCTGAACTTTTCAAATTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* *
15553074 CTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGACCATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * * * *
15553139 CGGGAAATCGCACCATTTGATCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
15553204 AAAAACTTATTTACGTGAGAA
196 AAAAACTTATTTACGTGAG-A
* * ** * ** * *
15553225 TTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * *
15553288 CTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAA-TTTTCGAACATTCCATTCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
* * *
15553352 CTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
131 CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
15553417 AAAAACTTATTTACGTGAAAA
196 AAAAACTTATTTACGTG-AGA
* * * * * * * *
15553438 TTCTTTTTCTCTTGGTTCTTTGACGAAATTTCGAACTTGTCAAACTTTTACGAGATCTTTTATAA
1 TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
* * * **
15553503 CTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAGAAATTTTTCGAACATTCCATGCT
66 CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC-
* *
15553568 TCGGG-TATCGCATTATTTGGTCTAAAAA
130 TCGGGAAATCGCATCATTTGGTCTAAAAA
15553596 AAAGTTATCA
Statistics
Matches: 14545, Mismatches: 2371, Indels: 995
0.81 0.13 0.06
Matches are distributed among these distances:
201 7 0.00
202 66 0.00
203 120 0.01
204 270 0.02
205 201 0.01
206 12 0.00
207 133 0.01
208 123 0.01
209 141 0.01
210 411 0.03
211 667 0.05
212 1822 0.13
213 3048 0.21
214 3133 0.22
215 2813 0.19
216 1437 0.10
217 81 0.01
218 59 0.00
219 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (215 bp):
TTGTTTCTCTCTTGCTTCTTGGATGAAATTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAA
CTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCT
CGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
AAAAACTTATTTACGTGAGA
Found at i:15553949 original size:393 final size:395
Alignment explanation
Indices: 15553264--15553987 Score: 1025
Period size: 393 Copynumber: 1.8 Consensus size: 395
15553254 CGAACCAGTG
* * * *
15553264 AAACATTTACAAGTTCTTTTATAACTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGA
1 AAACATGTACAAGTTCTTTTATAACATCTGTTCCGTAGAGTATTCAAGACGATCCATTCCATCAA
* ** * * * *
15553329 TCAATTTTCGAACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGT
66 CCAATTTTCGAACATTCCATGATCGGGAAATCGCATCATATGGTCTAAAAGGTTTGTCATTTTGG
* * * *
15553394 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTCTTTTTCTCTTGGTTCTTT
131 AAACAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAAAATTCTTTATATCTTGGTTCTTG
*
15553459 GACGAAATTTCGAACTTGTCAAACTTTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATTC
196 GACGAAATTTCGAACTTGTCAAACCTTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATTC
* * * * *
15553524 AAGACGATCCCTTCCTTCGAGAAATTTTTCGAACATTCCATGCTTCGGG-TATCGCATTATTTGG
261 AAGACGATCCATTCCTTAGACAAATTTTTCGAACATTCCATGC-TCGGGAAATCGCATCATTTGG
*
15553588 TCTAAAAAAAAGTTATCATTTACGTGGGAGTTGTTTCTCTCTTTTCTTCTTGGATGAAATTCGAA
325 ACTAAAAAAAAGTTATCATTTACGTGGGAGTTGTTTCTCTCTTTTCTTCTTGGATGAAATTCGAA
15553653 CTCGTC
390 CTCGTC
* * *
15553659 AAACATGTACGAGTTCTTTTATAACATC-GATTCCCGT-GAGTATTCAAGATGATCCATTCCTTC
1 AAACATGTACAAGTTCTTTTATAACATCTG-TT-CCGTAGAGTATTCAAGACGATCCATTCCATC
*
15553722 AACCAATTTTTC-ACACATTCCATGATCGGGAAATCGCATCATATGGTCCTAATA-GTTTGTCA-
64 AACCAA-TTTTCGA-ACATTCCATGATCGGGAAATCGCATCATATGGT-CTAAAAGGTTTGTCAT
* *
15553784 TTTGGAAACAACTTTTGGTCCTTGAATT-AAAACTTATTTACGTGCAAATTGTTTATATCTT-GT
126 TTTGGAAACAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAAAATTCTTTATATCTTGGT
* * * *
15553847 TCTTGGACGAACTTTCGAACTTGTCAAACCTTTATGAGTTCTTTTATAACTTCGGTTCC-TAAGA
191 TCTTGGACGAAATTTCGAACTTGTCAAACCTTTACGAGATCTTTTATAACTTCGATTCCTTAA-A
*
15553911 GTATTCAAGACGATCCATTCCTTAGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
255 GTATTCAAGACGATCCATTCCTTAGACAAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
15553976 TTTGGACTAAAA
320 TTTGGACTAAAA
15553988 GTTTGTCATT
Statistics
Matches: 289, Mismatches: 33, Indels: 16
0.86 0.10 0.05
Matches are distributed among these distances:
392 8 0.03
393 120 0.42
394 30 0.10
395 82 0.28
396 44 0.15
397 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (395 bp):
AAACATGTACAAGTTCTTTTATAACATCTGTTCCGTAGAGTATTCAAGACGATCCATTCCATCAA
CCAATTTTCGAACATTCCATGATCGGGAAATCGCATCATATGGTCTAAAAGGTTTGTCATTTTGG
AAACAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAAAATTCTTTATATCTTGGTTCTTG
GACGAAATTTCGAACTTGTCAAACCTTTACGAGATCTTTTATAACTTCGATTCCTTAAAGTATTC
AAGACGATCCATTCCTTAGACAAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGA
CTAAAAAAAAGTTATCATTTACGTGGGAGTTGTTTCTCTCTTTTCTTCTTGGATGAAATTCGAAC
TCGTC
Found at i:15554835 original size:215 final size:215
Alignment explanation
Indices: 15553605--15556074 Score: 2838
Period size: 215 Copynumber: 11.5 Consensus size: 215
15553595 AAAAGTTATC
* * ** * * *
15553605 ATTTACGTGGGAGTTGTTTCTCTCTTTTCTTCTTGGATGAAA-TTCGAACTCGTCAAACATGTAC
1 ATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTAC
* * * * *
15553669 GAGTTCTTTTATAACATCGATTCCCGT-GAGTATTCAAGATGATCCATTCCTTCAACCAATTTTT
65 GAGTTCTTTTATAACTTCGGTT-CCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTT
* * * *
15553733 C-ACACATTCCATGATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCA-TTTGGAAACAAC
129 CGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAAC
*
15553796 TTTTGGTCCTTGAATT-AAAACTT
192 TTTTGGTCTTTGAATTAAAAACTT
* * * * *
15553819 ATTTACGTGCA-AATTGTTTATATCTT-GTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTAT
1 ATTTACGTG-AGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTAC
* *
15553882 GAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTC
65 GAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTC
*
15553947 GAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAGTTTGTCATTTTGTAAACAACTTT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTT
*
15554012 TGGACTTTGAATTAAAAACTT
195 TGGTCTTTGAATTAAAAACTT
* * * * * * *
15554033 ATTTACGTGAGAGTTGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACG
* * *
15554098 AGTTCTTTTGTAACATCGGTTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAA-TTTTC
66 AGTTCTTTTATAACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTC
* * * * * * * * *
15554160 GAA-AATCCATGATCGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTT
15554224 TTGGTCTTTGAATTAAAAACTT
194 TTGGTCTTTGAATTAAAAACTT
* * ** * * **
15554246 TTTTACGT-AGGAATTGTTTCTCTCTT-GCTCTTGGA-TTAACTTCTGAACTTTTCAAATTTTTA
1 ATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTC-GAACTTGTCAAACATTTA
*
15554308 CGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCCTTCGACCAATTTT
64 CGAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATT-CCTTCGACCAATTTT
* * * *
15554373 TCGACCATTCCATGCTCGGGAAATCGCACCATTTGATCTAAAA-ATT-TCATTTTGTAAACAACT
128 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACT
* *
15554436 TTTGGTCTATAAATTAAAAACTT
193 TTTGGTCTTTGAATTAAAAACTT
* ** * * * ** * *
15554459 ATTTACGTGAGAATTG-CT-TCTCTTGGTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACG
* * * * *
15554522 ACTTCTTTTATAACTTCTGTTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCG
66 AGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
* * *
15554587 AACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTT
131 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAACTTT
15554652 TGGTCTTTGAATTAAAAACTT
195 TGGTCTTTGAATTAAAAACTT
* * * *
15554673 ATTTACGTGAGAATTCTTTTTCTCTTGGTTCTTTGACGAAATTTC-AACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACG
* * * * **
15554737 AGATCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAGAAATTTTTCG
66 AGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
* * *
15554802 AACGTTCCATGCTTCGGG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTT
131 AACATTCCATGC-TCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTT
*
15554866 TTGGTCTGTGAATTAAAAACTT
194 TTGGTCTTTGAATTAAAAACTT
* * ** * * *
15554888 ATTTACGTGGGAGTTGTTTCTCTCTTTCTTCTTGGATGAAA-TTCTGAACTCGTCAAACATGTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTC-GAACTTGTCAAACATTTAC
* * * *
15554952 GAGTTCTTTTATAACATCGGTTCCCGT-GAGTATTCAAGATTGATCCATTCCTTCAACCAATTTT
65 GAGTTCTTTTATAACTTCGGTT-CCTTAGAGTATTCAAGA-CGATCCATTCCTTCGACCAATTTT
* * * *
15555016 TC-ACACATTCCATGATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAA
128 TCGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTAAAAGTTTGTCATTTTGTAAACAA
*
15555080 CTTTTGGTCCTTGAATTAAAAACTT
191 CTTTTGGTCTTTGAATTAAAAACTT
* * * * * *
15555105 ATTTACGTGCA-AAATGTTTATATCTT-GTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTAT
1 ATTTACGTG-AGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTAC
* *
15555168 GAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGACCAATTTTTC
65 GAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTC
*
15555233 GAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACTT
*
15555298 TTGGACTTTGAATTAAAAACTT
194 TTGGTCTTTGAATTAAAAACTT
* * * * * * *
15555320 ATTTACGTGAGAGTTGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACG
* * *
15555385 AGTTCTTTTGTAACATCGGTTCCTGT-GAGTTTTCAAGACGATCCA-TCCTTCGACCAA-TTTTC
66 AGTTCTTTTATAACTTCGGTTCCT-TAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTC
* * * * * * * * *
15555447 GAA-AATCCATGATCGGGAAATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAACTT
*
15555511 TTGCTCTTTGAATTAAAAACTT
194 TTGGTCTTTGAATTAAAAACTT
* * * ** * * **
15555533 TTTTACGT-AGGAATTGTTTCTCTCTTTGCTCTTGGA-TTAACTTCTGAACTTTTCAAATTTTTA
1 ATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTC-GAACTTGTCAAACATTTA
*
15555596 CGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTT
64 CGAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTT
* * *
15555661 CGACCATTCCATGCTCGGGAAATCGCACCATTTGATCTAAAAAGTTT-TCATTTTGTAAACAACT
129 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAAAGTTTGTCATTTTGTAAACAACT
* *
15555725 TTTGGTCTATAAATTAAAAACTT
193 TTTGGTCTTTGAATTAAAAACTT
* ** * * * ** * *
15555748 ATTTACGTGAGAATTG-CT-TCTCTT-GTTCTTAAATGAACTTCCGAACCAGTGAAACATTTACA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACG
* * *
15555810 AGTTCTTTTATAACTTC--TTCCTTAGAGTATTCAAGACGATCCATTCCATCGATCAATTTTCCG
66 AGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
* * *
15555873 AACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAACTTT
131 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAACTTT
15555938 TGGTCTTTGAATTAAAAACTT
195 TGGTCTTTGAATTAAAAACTT
* * * * * *
15555959 ATTTACGTGAGAAATCTTTTTCTCTTGGTTCTTTGACAAAAATTCGAACTTGTCAAACATTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACG
* * *
15556024 AGATCTTTTATAACTTCGATTCCTTA-AGTATTCAAGACGATCCCTTCCTTC
66 AGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTC
15556075 TTTTTCGAGA
Statistics
Matches: 1888, Mismatches: 309, Indels: 117
0.82 0.13 0.05
Matches are distributed among these distances:
209 4 0.00
210 76 0.04
211 111 0.06
212 228 0.12
213 419 0.22
214 196 0.10
215 456 0.24
216 278 0.15
217 118 0.06
218 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (215 bp):
ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACATTTACG
AGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAACTTTT
GGTCTTTGAATTAAAAACTT
Found at i:15555985 original size:639 final size:643
Alignment explanation
Indices: 15553606--15556066 Score: 3275
Period size: 639 Copynumber: 3.8 Consensus size: 643
15553596 AAAGTTATCA
* * *
15553606 TTTACGTGGGAGTTGTTTCTCTCTTTTCTTCTTGGATGAAATTC-GAACTCGTCAAACATGTACG
1 TTTACGTAGGAATTGTTTCTCTCTTTGCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACG
* * *
15553670 AGTTCTTTTATAACATCGATTCCCGTGAGTATTCAAGATGATCCATTCCTTCAACCAATTTTTCA
66 AGTTCTTTTATAACATCGGTTCCCGAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTTTCA
* * *
15553735 CACATTCCATGATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCA-TTTGGAAACAACTTT
131 CACATTCCATGATCGGGAAATCGCACCATATGATCCTAAAAGTTTGTCATTTTGGAAACAACTTT
* * ** *
15553799 TGGTCCTTGAATT-AAAACTTATTTACGTGCAAATTGTTTATATCTTGTTCTTGGACGAACTTTC
196 TGGTCCTTAAATTAAAAACTTATTTACGTGCAAATTGTCTATATCTTGTTCTTAAACGAACTTCC
** * **
15553863 GAACTTGTCAAACCTTTATGAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCCA
261 GAACCAGTCAAACATTTACAAGTTCTTTTATAACTTC-GTTCCTAAGAGTATTCAAGACGATCCA
* *
15553928 TTCCTTAGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAA-GTTT
325 TTCCATAGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAGGTTT
* *
15553992 GTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTC
390 GTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTC
* * *
15554057 TTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAACATCGGTTCCT
455 TTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGATCTTTTATAACATCGATTCCT
* *
15554122 GTGAGTTTTCAAGACGATCCATCCTTCGACCAATTTTCGAAAATCCATGATCGGGAAATCGCATC
520 -TAAGTATTCAAGACGATCCATCCTTCGACCAATTTTCGAAAATCCATGATCGGGAAATCGCATC
15554187 AGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATTAAAAACTTT
584 AGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATTAAAAACTTT
* * ** ** *
15554247 TTTACGTAGGAATTGTTTCTCTC-TTGC-TCTTGGATTAACTTCTGAACTTTTCAAATTTTTACG
1 TTTACGTAGGAATTGTTTCTCTCTTTGCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACG
* * *
15554310 AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCCTTCGACCAATTTTTC
66 AGTTCTTTTATAACATCGGTTCCCGAGAGTATTCAAGACGATCCATT-CCTTCAACCAATTTTTC
* * * *
15554375 GAC-CATTCCATGCTCGGGAAATCGCACCATTTGAT-CTAAAA-ATT-TCATTTTGTAAACAACT
130 -ACACATTCCATGATCGGGAAATCGCACCATATGATCCTAAAAGTTTGTCATTTTGGAAACAACT
* *
15554436 TTTGGT-CTATAAATTAAAAACTTATTTACGTG-AGAATTG-CT-TCTCTTGGTTCTTAAATGAA
194 TTTGGTCCT-TAAATTAAAAACTTATTTACGTGCA-AATTGTCTATATCTT-GTTCTTAAACGAA
* * *
15554497 CTTCCGAACCAGTGAAACATTTACAACTTCTTTTATAACTTCTGTTCCTTAGAGTATTCAAGACG
256 CTTCCGAACCAGTCAAACATTTACAAGTTCTTTTATAACTTC-GTTCCTAAGAGTATTCAAGACG
* * * * * *
15554562 ATCCATTCCATCGATCAATTTTCCGAACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAA
320 ATCCATTCCATAGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAA
*
15554627 GGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTCTTT
385 GGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTCTTT
* * * * * * * * *
15554692 TTCTCTTGGTTCTTTGACGAAATTTC-AACTTGTCAAACTTTTACGAGATCTTTTATAACTTCGA
450 CTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGATCTTTTATAACATCGA
* ** ** *
15554756 TTCCTTAAAGTATTCAAGACGATCCCTTCCTTCGAGAAATTTTTCGAACGTTCCATGCTTCGGG-
515 TTCCTT-AAGTATTCAAGACGAT-CCATCCTTCGACCAA-TTTTCGAA-AATCCATG-ATCGGGA
* * * * * * * * * *
15554820 TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTGTGAATTAAAAA
575 AATCGCATCAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATTAAAAA
*
15554885 CTTA
640 CTTT
* *
15554889 TTTACGTGGGAGTTGTTTCTCTCTTT-CTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACG
1 TTTACGTAGGAATTGTTTCTCTCTTTGCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACG
* *
15554953 AGTTCTTTTATAACATCGGTTCCCGTGAGTATTCAAGATTGATCCATTCCTTCAACCAATTTTTC
66 AGTTCTTTTATAACATCGGTTCCCGAGAGTATTCAAGA-CGATCCATTCCTTCAACCAATTTTTC
* * *
15555018 ACACATTCCATGATCGGGAAATCGCATCATATGGTCCTAATAGTTTGTCATTTTGGAAACAACTT
130 ACACATTCCATGATCGGGAAATCGCACCATATGATCCTAAAAGTTTGTCATTTTGGAAACAACTT
* * * ** *
15555083 TTGGTCCTTGAATTAAAAACTTATTTACGTGCAAAATGTTTATATCTTGTTCTTGGACGAACTTT
195 TTGGTCCTTAAATTAAAAACTTATTTACGTGCAAATTGTCTATATCTTGTTCTTAAACGAACTTC
** * **
15555148 CGAACTTGTCAAACCTTTATGAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCC
260 CGAACCAGTCAAACATTTACAAGTTCTTTTATAACTTC-GTTCCTAAGAGTATTCAAGACGATCC
* * *
15555213 ATTCCTTAGACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAAGTT
324 ATTCCATAGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAGGTT
* *
15555278 TGTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCT
389 TGTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCT
* * *
15555343 CTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGTTCTTTTGTAACATCGGTTCC
454 CTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGATCTTTTATAACATCGATTCC
* *
15555408 TGTGAGTTTTCAAGACGATCCATCCTTCGACCAATTTTCGAAAATCCATGATCGGGAAATCGCAT
519 T-TAAGTATTCAAGACGATCCATCCTTCGACCAATTTTCGAAAATCCATGATCGGGAAATCGCAT
*
15555473 CAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGCTCTTTGAATTAAAAACTTT
583 CAGTTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATTAAAAACTTT
* * ** ** *
15555534 TTTACGTAGGAATTGTTTCTCTCTTTGC-TCTTGGATTAACTTCTGAACTTTTCAAATTTTTACG
1 TTTACGTAGGAATTGTTTCTCTCTTTGCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACG
* * *
15555598 AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG
66 AGTTCTTTTATAACATCGGTTCCCGAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTTTC-
* * *
15555663 AC-CATTCCATGCTCGGGAAATCGCACCATTTGAT-CTAAAAAGTTT-TCATTTTGTAAACAACT
130 ACACATTCCATGATCGGGAAATCGCACCATATGATCCT-AAAAGTTTGTCATTTTGGAAACAACT
* *
15555725 TTTGGT-CTATAAATTAAAAACTTATTTACGTG-AGAATTG-CT-TCTCTTGTTCTTAAATGAAC
194 TTTGGTCCT-TAAATTAAAAACTTATTTACGTGCA-AATTGTCTATATCTTGTTCTTAAACGAAC
* *
15555786 TTCCGAACCAGTGAAACATTTACAAGTTCTTTTATAACTTC-TTCCTTAGAGTATTCAAGACGAT
257 TTCCGAACCAGTCAAACATTTACAAGTTCTTTTATAACTTCGTTCCTAAGAGTATTCAAGACGAT
* * * * * *
15555850 CCATTCCATCGATCAATTTTCCGAACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAGG
322 CCATTCCATAGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAGG
* * *
15555915 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAATCTTTTT
387 TTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTCT
* * * * * *
15555980 CTCTTGGTTCTTTGACAAAAATT-CGAACTTGTCAAACATTTACGAGATCTTTTATAACTTCGAT
452 CTCTTGCTTCTTGGAC-AAAATTCCAAACATGTCAAACATTTACAAGATCTTTTATAACATCGAT
15556044 TCCTTAAGTATTCAAGACGATCC
516 TCCTTAAGTATTCAAGACGATCC
15556067 CTTCCTTCTT
Statistics
Matches: 1563, Mismatches: 223, Indels: 71
0.84 0.12 0.04
Matches are distributed among these distances:
638 28 0.02
639 402 0.26
640 186 0.12
641 123 0.08
642 94 0.06
643 165 0.11
644 77 0.05
645 155 0.10
646 57 0.04
647 220 0.14
648 55 0.04
649 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (643 bp):
TTTACGTAGGAATTGTTTCTCTCTTTGCTTCTTGGATGAAATTCTGAACTCGTCAAACATGTACG
AGTTCTTTTATAACATCGGTTCCCGAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTTTCA
CACATTCCATGATCGGGAAATCGCACCATATGATCCTAAAAGTTTGTCATTTTGGAAACAACTTT
TGGTCCTTAAATTAAAAACTTATTTACGTGCAAATTGTCTATATCTTGTTCTTAAACGAACTTCC
GAACCAGTCAAACATTTACAAGTTCTTTTATAACTTCGTTCCTAAGAGTATTCAAGACGATCCAT
TCCATAGACCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAGGTTTG
TCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCT
TGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTACAAGATCTTTTATAACATCGATTCCTT
AAGTATTCAAGACGATCCATCCTTCGACCAATTTTCGAAAATCCATGATCGGGAAATCGCATCAG
TTGGTGTAAATAGTTTATCAATGTGGAAATAACTTTTGGTCTTTGAATTAAAAACTTT
Found at i:15556693 original size:215 final size:213
Alignment explanation
Indices: 15556136--15556799 Score: 831
Period size: 215 Copynumber: 3.1 Consensus size: 213
15556126 TCTAAAAAGT
* ** *
15556136 TTATTTACG-GAGGAGTTGTTTCTCTCTTTTTTCTTGGA-TGAATTTCGAACTCGTCAAACATGT
1 TTATTTACGTGA-GAATTGTTTCTCTC--TTTTCTTGGACAAAATTTCGAACT-GTCAAACATTT
* * *
15556199 ACGAGTTCTTTTATAACATCGGTTCCCGTGAGTATTCAAGATGATCCATTCCTTCAACCAATTTT
62 ACGAGTTCTTTTATAACATCGGTTCCTGTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTT
* *
15556264 TC-AACATTCCATGATCGGGAAATCGCATCATATGGTCT-AATAGTTTGTCATTTTGGAAACAAC
127 TCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGGAAACAAC
*
15556327 TTTTGGTCCTTGAATTAAAAAC
192 TTTTGGTCTTTGAATTAAAAAC
* * * * * *
15556349 TTATTTACGTGCA-AATTGTTTATATCTTTTCTTGGACGAACTTTCGAACTTGTCAAACCTTTAT
1 TTATTTACGTG-AGAATTGTTTCTCTCTTTTCTTGGACAAAATTTCGAAC-TGTCAAACATTTAC
* ** * *
15556413 GAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTAGA-CAAATTTTC
64 GAGTTCTTTTATAACATCGGTTCCTGTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTC
* * *
15556477 GAACATTCCATGCTCGGGAAATCGCATCATTTGGACTAAAAAGTTTGTCATTTTGTAAACAACTT
129 GAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGGAAACAACTT
*
15556542 TTGGACTTTGAATTAAAAAC
194 TTGGTCTTTGAATTAAAAAC
* * *
15556562 TTATTTACGTGAGAGTTGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACATGTCAAACATTTA
1 TTATTTACGTGAGAATTGTTTCTCTCTT--TTCTTGGACAAAATTTCGAAC-TGTCAAACATTTA
* * *
15556627 CAAGTTCTTTTGTAACATCGGTTCCTGTGAGTTTTCAAGACGATCCA-TCCTTCGACCAATTTTT
63 CGAGTTCTTTTATAACATCGGTTCCTGTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTT
* * * * * *
15556691 CGAA-AATCCATGATCGGGAAATCGCATCAGTTGGTCTAAAATAGTTTATCAATGTGGAAATAAC
128 CGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGGAAACAAC
15556755 TTTTGGTCTTTGAATTAAAAAC
192 TTTTGGTCTTTGAATTAAAAAC
* *
15556777 TTTTTTACGTGAGAATTGCTTCT
1 TTATTTACGTGAGAATTGTTTCT
15556800 NNNNNNNNNN
Statistics
Matches: 385, Mismatches: 55, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
211 18 0.05
212 101 0.26
213 86 0.22
214 41 0.11
215 139 0.36
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (213 bp):
TTATTTACGTGAGAATTGTTTCTCTCTTTTCTTGGACAAAATTTCGAACTGTCAAACATTTACGA
GTTCTTTTATAACATCGGTTCCTGTGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGA
ACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGGAAACAACTTTT
GGTCTTTGAATTAAAAAC
Found at i:15557639 original size:24 final size:25
Alignment explanation
Indices: 15557589--15557645 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
15557579 ATAAAATATT
*
15557589 TATTATTATTAGTTATTATTATCAC
1 TATTATTATTAGTTATTATGATCAC
*
15557614 TA-TATTATT-GTTATTAATGATTAC
1 TATTATTATTAGTTATT-ATGATCAC
15557638 TATTATTA
1 TATTATTA
15557646 ACCATCCTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 6 0.21
24 15 0.54
25 7 0.25
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (25 bp):
TATTATTATTAGTTATTATGATCAC
Found at i:15558338 original size:17 final size:18
Alignment explanation
Indices: 15558318--15558388 Score: 67
Period size: 17 Copynumber: 4.0 Consensus size: 18
15558308 TCTATTTGGT
*
15558318 TTTTTTATT-AATTTAAA
1 TTTTTAATTAAATTTAAA
15558335 -TTTTAATTAAATTTAAA
1 TTTTTAATTAAATTTAAA
* **
15558352 -TTTAAAGCAAATTTAAA
1 TTTTTAATTAAATTTAAA
15558369 TTTTTACATTTAAATTTAAA
1 TTTTTA-A-TTAAATTTAAA
15558389 ATAAATTTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
16 7 0.16
17 22 0.51
18 4 0.09
19 1 0.02
20 9 0.21
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (18 bp):
TTTTTAATTAAATTTAAA
Found at i:15558398 original size:17 final size:17
Alignment explanation
Indices: 15558327--15558401 Score: 84
Period size: 17 Copynumber: 4.6 Consensus size: 17
15558317 TTTTTTTATT
*
15558327 AATTTAAATTTTAATTA
1 AATTTAAATTTAAATTA
**
15558344 AATTTAAATTTAAAGCA
1 AATTTAAATTTAAATTA
15558361 AATTTAAATTT---TTA
1 AATTTAAATTTAAATTA
* *
15558375 CATTTAAATTTAAAATA
1 AATTTAAATTTAAATTA
15558392 AATTTAAATT
1 AATTTAAATT
15558402 AAACCATGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
14 11 0.23
17 36 0.77
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (17 bp):
AATTTAAATTTAAATTA
Found at i:15558404 original size:5 final size:6
Alignment explanation
Indices: 15558327--15558401 Score: 66
Period size: 6 Copynumber: 12.7 Consensus size: 6
15558317 TTTTTTTATT
* **
15558327 AATTTA AATTTT AA-TTA AATTTA AATTTA AA-GCA AATTTA AATTTTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AA--TTTA
* *
15558375 CATTTA AATTTA AA-ATA AATTTA AATT
1 AATTTA AATTTA AATTTA AATTTA AATT
15558402 AAACCATGAA
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
5 11 0.20
6 38 0.70
8 5 0.09
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (6 bp):
AATTTA
Found at i:15558866 original size:68 final size:68
Alignment explanation
Indices: 15558735--15559177 Score: 755
Period size: 68 Copynumber: 6.5 Consensus size: 68
15558725 AAGACTTTGC
* * * *
15558735 TATCCAACTTTACTTCAATTTCAAGAGGATGACGTTGCTC-TACTTCAATTTCAGAGGTAAAGAC
1 TATCC-ACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGAC
15558799 GTGT
65 GTGT
15558803 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
15558868 TGT
66 TGT
*
15558871 TATCCA-TCTACTTCAATTTCAAGGGGATGATGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
15558935 TGT
66 TGT
15558938 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
15559003 TGT
66 TGT
*
15559006 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACA
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
15559071 TGT
66 TGT
* * * * *
15559074 TATCCACTCTACTTCAATTTCAAGGGGATGACATTACTCTTACTTCAATTTCAAAGATAAAGACT
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
*
15559139 TGA
66 TGT
15559142 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTG
15559178 GTGACCTGCA
Statistics
Matches: 358, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
67 98 0.27
68 260 0.73
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (68 bp):
TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
TGT
Found at i:15571096 original size:29 final size:29
Alignment explanation
Indices: 15571056--15571322 Score: 126
Period size: 30 Copynumber: 9.1 Consensus size: 29
15571046 TACCGGGGGC
*
15571056 AAAATGGTAATTTTGGTGTAATCGGGGTT
1 AAAATGGTAATTTTGGTGAAATCGGGGTT
** *
15571085 AAAAATGG-AATTTT--AAAAGATTCGGGGGT
1 -AAAATGGTAATTTTGGTGAA-A-TCGGGGTT
* * **
15571114 AAAATGGAAATCTTCGGTGAAATTAGGGTT
1 AAAATGGTAAT-TTTGGTGAAATCGGGGTT
* * *
15571144 AAAAATGG-AATTTT--AGAAGCTTCGGGGGT
1 -AAAATGGTAATTTTGGTGAA--ATCGGGGTT
15571173 AAAATGGTAATTTTTGGTGAAATCGGGGTT
1 AAAATGGTAA-TTTTGGTGAAATCGGGGTT
* * *
15571203 AAAATGG-AATTTT--AGAAGCTTCGGGGGT
1 AAAATGGTAATTTTGGTGAA--ATCGGGGTT
* **
15571231 AAAATGGTAATTTTCAGTGAAATTAGGGTT
1 AAAATGGTAATTTT-GGTGAAATCGGGGTT
* * * *
15571261 AAAACGG-AATTTT--AGAAGCTTCGGGGGT
1 AAAATGGTAATTTTGGTGAA--ATCGGGGTT
*
15571289 AAAATGGTAAATTTCGGTGAAATCGGGGTT
1 AAAATGGT-AATTTTGGTGAAATCGGGGTT
15571319 AAAA
1 AAAA
15571323 ACGGAAATTT
Statistics
Matches: 174, Mismatches: 38, Indels: 50
0.66 0.15 0.19
Matches are distributed among these distances:
26 6 0.03
27 4 0.02
28 44 0.25
29 39 0.22
30 62 0.36
31 8 0.05
32 11 0.06
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.31
Consensus pattern (29 bp):
AAAATGGTAATTTTGGTGAAATCGGGGTT
Found at i:15571118 original size:58 final size:58
Alignment explanation
Indices: 15571049--15571422 Score: 484
Period size: 59 Copynumber: 6.4 Consensus size: 58
15571039 TTATGGATAC
* * * * *
15571049 CGGGGGCAAAATGGTAATTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATT
1 CGGGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
* * ** *
15571107 CGGGGGTAAAATGGAAATCTTCGGTGAAATTAGGGTTAAAAATGGAATTTTAGAAGCTT
1 CGGGGGTAAAATGGTAAT-TTTGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
*
15571166 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATGGAATTTTAGAAGCTT
1 CGGGGGTAAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
* **
15571224 CGGGGGTAAAATGGTAATTTTCAGTGAAATTAGGGTT-AAAACGGAATTTTAGAAGCTT
1 CGGGGGTAAAATGGTAATTTT-GGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
* *
15571282 CGGGGGTAAAATGGTAAATTTCGGTGAAATCGGGGTTAAAAACGGAAATTTAGAAGCTT
1 CGGGGGTAAAATGGT-AATTTTGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
* * * *
15571341 CGGGGGTAAAATGGTAAATTTCGGTGAAATAGGGGTGAAAAACGGAATTTTAGAAGTTT
1 CGGGGGTAAAATGGT-AATTTTGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
*
15571400 CGGGGGTCAAAAT-ATAATTTTGG
1 CGGGGGT-AAAATGGTAATTTTGG
15571423 AAAAGTTTTG
Statistics
Matches: 283, Mismatches: 27, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
57 4 0.01
58 120 0.42
59 153 0.54
60 6 0.02
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.29
Consensus pattern (58 bp):
CGGGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
Found at i:15571226 original size:117 final size:117
Alignment explanation
Indices: 15571049--15571420 Score: 538
Period size: 117 Copynumber: 3.2 Consensus size: 117
15571039 TTATGGATAC
* * * *
15571049 CGGGGGCAAAATGGTAA-TTTTGGTGTAATCGGGGTTAAAAATGGAATTTTAAAAGATTCGGGGG
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTTCGGGGG
*
15571113 TAAAATGGAAATCTTCGGTGAAATTAGGGTTAAAAATGGAATTTTAGAAGCTT
66 TAAAATGGAAAT-TTCGGTGAAATTAGGGTTAAAAACGGAATTTTAGAAGCTT
15571166 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATGGAATTTTAGAAGCTTCGGGGG
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTTCGGGGG
* *
15571230 TAAAATGGTAATTTTCAGTGAAATTAGGGTT-AAAACGGAATTTTAGAAGCTT
66 TAAAATGG-AAATTTCGGTGAAATTAGGGTTAAAAACGGAATTTTAGAAGCTT
* * * *
15571282 CGGGGGTAAAATGGTAAATTTCGGTGAAATCGGGGTTAAAAACGGAAATTTAGAAGCTTCGGGGG
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTTCGGGGG
* *
15571347 TAAAATGGTAAATTTCGGTGAAA-TAGGGGTGAAAAACGGAATTTTAGAAGTTT
66 TAAAATGG-AAATTTCGGTGAAATTA-GGGTTAAAAACGGAATTTTAGAAGCTT
*
15571400 CGGGGGTCAAAAT-ATAATTTT
1 CGGGGGT-AAAATGGTAATTTT
15571421 GGAAAAGTTT
Statistics
Matches: 232, Mismatches: 17, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
116 57 0.25
117 116 0.50
118 54 0.23
119 5 0.02
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.30
Consensus pattern (117 bp):
CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTTCGGGGG
TAAAATGGAAATTTCGGTGAAATTAGGGTTAAAAACGGAATTTTAGAAGCTT
Found at i:15571343 original size:29 final size:28
Alignment explanation
Indices: 15571145--15571361 Score: 96
Period size: 29 Copynumber: 7.5 Consensus size: 28
15571135 ATTAGGGTTA
* *
15571145 AAAATGGAATTTTAGAAGCTTCGGGGGT
1 AAAACGGAAATTTAGAAGCTTCGGGGGT
* * * ** ** *
15571173 AAAATGGTAATTTTTGGTGAAATCGGGGTT
1 AAAACGG-AAATTTAGAAG-CTTCGGGGGT
* *
15571203 AAAATGGAATTTTAGAAGCTTCGGGGGT
1 AAAACGGAAATTTAGAAGCTTCGGGGGT
* * * * *
15571231 AAAATGGTAATTTTCAGTGAA-ATT-AGGGTT
1 AAAACGG-AAATTT-A--GAAGCTTCGGGGGT
*
15571261 AAAACGGAATTTTAGAAGCTTCGGGGGT
1 AAAACGGAAATTTAGAAGCTTCGGGGGT
* * ** ** *
15571289 AAAATGGTAAATTTCGGTGAAATCGGGGTT
1 AAAACGG-AAATTTAGAAG-CTTCGGGGGT
15571319 AAAAACGGAAATTTAGAAGCTTCGGGGGT
1 -AAAACGGAAATTTAGAAGCTTCGGGGGT
*
15571348 AAAATGGTAAATTT
1 AAAACGG-AAATTT
15571362 CGGTGAAATA
Statistics
Matches: 142, Mismatches: 35, Indels: 23
0.71 0.17 0.12
Matches are distributed among these distances:
26 3 0.02
27 2 0.01
28 38 0.27
29 48 0.34
30 40 0.28
31 8 0.06
32 3 0.02
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (28 bp):
AAAACGGAAATTTAGAAGCTTCGGGGGT
Found at i:15571375 original size:29 final size:30
Alignment explanation
Indices: 15571284--15571382 Score: 71
Period size: 29 Copynumber: 3.3 Consensus size: 30
15571274 AGAAGCTTCG
*
15571284 GGGGT-AAAATGGTAAATTTCGGTGAAATC
1 GGGGTAAAAATGGTAAATTTCGGTGAAATA
* * ** ** *
15571313 GGGGTTAAAAACGG-AAATTTAGAAG-CTTCG
1 GGGG-TAAAAATGGTAAATTTCGGTGAAAT-A
15571343 GGGGT-AAAATGGTAAATTTCGGTGAAATA
1 GGGGTAAAAATGGTAAATTTCGGTGAAATA
15571372 GGGGTGAAAAA
1 GGGGT-AAAAA
15571383 CGGAATTTTA
Statistics
Matches: 49, Mismatches: 14, Indels: 12
0.65 0.19 0.16
Matches are distributed among these distances:
28 6 0.12
29 19 0.39
30 14 0.29
31 10 0.20
ACGTcount: A:0.37, C:0.06, G:0.32, T:0.24
Consensus pattern (30 bp):
GGGGTAAAAATGGTAAATTTCGGTGAAATA
Done.