Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 56 of 143
Found at i:18022952 original size:15 final size:14
Alignment explanation
Indices: 18022894--18022952 Score: 68
Period size: 15 Copynumber: 4.2 Consensus size: 14
18022884 GAATATGATA
*
18022894 TTTTTTTCATTTCT
1 TTTTTTTCTTTTCT
*
18022908 TTCTTTTT-GTTTC-
1 TT-TTTTTCTTTTCT
18022921 TTTTTTTCTTTTCT
1 TTTTTTTCTTTTCT
18022935 TTTTGTTTCTTTTCT
1 TTTT-TTTCTTTTCT
18022950 TTT
1 TTT
18022953 CTTCCAAACA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
12 5 0.13
13 6 0.15
14 10 0.26
15 18 0.46
ACGTcount: A:0.02, C:0.14, G:0.03, T:0.81
Consensus pattern (14 bp):
TTTTTTTCTTTTCT
Found at i:18022952 original size:27 final size:27
Alignment explanation
Indices: 18022894--18022947 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 27
18022884 GAATATGATA
18022894 TTTTTTTCATTTCTTTCTTTTTGTTTC
1 TTTTTTTCATTTCTTTCTTTTTGTTTC
18022921 TTTTTTTC---T-TTTCTTTTTGTTTC
1 TTTTTTTCATTTCTTTCTTTTTGTTTC
18022944 TTTT
1 TTTT
18022948 CTTTTCTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 18 0.67
24 1 0.04
27 8 0.30
ACGTcount: A:0.02, C:0.13, G:0.04, T:0.81
Consensus pattern (27 bp):
TTTTTTTCATTTCTTTCTTTTTGTTTC
Found at i:18024208 original size:48 final size:48
Alignment explanation
Indices: 18024146--18024265 Score: 186
Period size: 48 Copynumber: 2.5 Consensus size: 48
18024136 ATTTAACAAA
*
18024146 GCATTTAACAAACAAAACAGTTAATAATGCAAATTACTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAAATTACTAAACAAAGAT
* * *
18024194 GCATTTAACAAACAAAACACTTAATGATGCAGATTATTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAAATTACTAAACAAAGAT
* *
18024242 TCATTTAACAAAAAAAACACTTAA
1 GCATTTAACAAACAAAACACTTAA
18024266 AGAAGCATAA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.24
Consensus pattern (48 bp):
GCATTTAACAAACAAAACACTTAATAATGCAAATTACTAAACAAAGAT
Found at i:18026261 original size:129 final size:129
Alignment explanation
Indices: 18026031--18026290 Score: 520
Period size: 129 Copynumber: 2.0 Consensus size: 129
18026021 TATCGTATGT
18026031 AGAGCAATTCAATGAGGCTCCACCCAACTTCTCGCTAAAATATGCAATTGGTCGTCCTTCTTGCG
1 AGAGCAATTCAATGAGGCTCCACCCAACTTCTCGCTAAAATATGCAATTGGTCGTCCTTCTTGCG
18026096 TCAAAACTGCTCCAATACCTATTCCTGATGCATCACATTCTATTTCAAAAGTTTTAGTAAAATC
66 TCAAAACTGCTCCAATACCTATTCCTGATGCATCACATTCTATTTCAAAAGTTTTAGTAAAATC
18026160 AGAGCAATTCAATGAGGCTCCACCCAACTTCTCGCTAAAATATGCAATTGGTCGTCCTTCTTGCG
1 AGAGCAATTCAATGAGGCTCCACCCAACTTCTCGCTAAAATATGCAATTGGTCGTCCTTCTTGCG
18026225 TCAAAACTGCTCCAATACCTATTCCTGATGCATCACATTCTATTTCAAAAGTTTTAGTAAAATC
66 TCAAAACTGCTCCAATACCTATTCCTGATGCATCACATTCTATTTCAAAAGTTTTAGTAAAATC
18026289 AG
1 AG
18026291 GTAAGGCAAG
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 131 1.00
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.31
Consensus pattern (129 bp):
AGAGCAATTCAATGAGGCTCCACCCAACTTCTCGCTAAAATATGCAATTGGTCGTCCTTCTTGCG
TCAAAACTGCTCCAATACCTATTCCTGATGCATCACATTCTATTTCAAAAGTTTTAGTAAAATC
Found at i:18030741 original size:48 final size:48
Alignment explanation
Indices: 18030680--18030800 Score: 188
Period size: 48 Copynumber: 2.5 Consensus size: 48
18030670 ATTTAACAAA
* *
18030680 GCATTTAACAAACAAAATAGTTAATAATGCAGATTACTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGAT
* *
18030728 GCATTTAACAAACAAAACACTTAATGATGCAGATTATTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGAT
*
18030776 GCATTTAACAAAAAAAAACACTTAA
1 GCATTTAAC-AAACAAAACACTTAA
18030801 AGAAGCATAA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
48 53 0.79
49 14 0.21
ACGTcount: A:0.53, C:0.14, G:0.09, T:0.24
Consensus pattern (48 bp):
GCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGAT
Found at i:18040420 original size:21 final size:21
Alignment explanation
Indices: 18040396--18040443 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
18040386 ATGATTAGCT
18040396 GAAGGAACATGAAGAA-GAAGA
1 GAAGGAACATG-AGAATGAAGA
* *
18040417 GAAGAAAGATGAGAATGAAGA
1 GAAGGAACATGAGAATGAAGA
18040438 GAAGGA
1 GAAGGA
18040444 CCCTGCCGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.56, C:0.02, G:0.35, T:0.06
Consensus pattern (21 bp):
GAAGGAACATGAGAATGAAGA
Found at i:18047174 original size:181 final size:181
Alignment explanation
Indices: 18046870--18047238 Score: 535
Period size: 181 Copynumber: 2.0 Consensus size: 181
18046860 GTAAACAAGT
18046870 TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
* *
18046935 TTCGAACTTGTCAAACATGTACGAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGAT
66 TTCGAACTTGTCAAACATGTACGAGTTCTTTTACAACTTCGGTTCCTAAGAGTATTCAAGACAAT
* ** * *
18047000 CCATTCCTTCGACCAATATTT-CGAACATTCTGTGCT-TGAGAAATCATATCA
131 CCATTCCTTCGACCAAT-TTTCCAAACATTCCATGCTCAG-GAAATCACATCA
* * * * **
18047051 TTTGGTCTTTGAATTAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGATTAACT
1 TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
* * * * *
18047116 TTTGAACTTGTCAAACATTTACGAGTTCTTTTACAACTTTGGTTCCTGAGAGTATTCAAGATAAT
66 TTCGAACTTGTCAAACATGTACGAGTTCTTTTACAACTTCGGTTCCTAAGAGTATTCAAGACAAT
*
18047181 CCATTCCTTTGACCAATTTTCCAAACATTCCATGCTCAGGAAATCACATCA
131 CCATTCCTTCGACCAATTTTCCAAACATTCCATGCTCAGGAAATCACATCA
18047232 TTTGGTC
1 TTTGGTC
18047239 AGATTATTTG
Statistics
Matches: 167, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
180 3 0.02
181 163 0.98
182 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (181 bp):
TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
TTCGAACTTGTCAAACATGTACGAGTTCTTTTACAACTTCGGTTCCTAAGAGTATTCAAGACAAT
CCATTCCTTCGACCAATTTTCCAAACATTCCATGCTCAGGAAATCACATCA
Found at i:18047420 original size:396 final size:396
Alignment explanation
Indices: 18046679--18047453 Score: 1102
Period size: 396 Copynumber: 2.0 Consensus size: 396
18046669 CCGAGAATTG
* * * *
18046679 TTTATGTGAGAATTGTTTCTCTCTTTATTCTTGGACAAACTTTCAAATTTGTCAAACATTTATGA
1 TTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACAAACTTTCAAACTTGTCAAACATTTACGA
* *
18046744 GTTCTTTTATAACTTCGGTTACTGAGAGTATTCAAGACGATCCATTCATTCGACCAATTTTCCAA
66 GTTCTTTTACAACTTCGGTTACTGAGAGTATTCAAGACAATCCATTCATTCGACCAATTTTCCAA
* * * * * *
18046809 ACATTCCATGCCCAGGAAATCGCTTGATTTGTGCAAAGTGTTTGTCATTTTGTAAACAAGTTTTG
131 ACATTCCATGCCCAGGAAATCACATCATTTGTGCAAAGTATTTGTCATTTAGTAAACAACTTTTG
*
18046874 GTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTCG
196 GTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTCA
* *
18046939 AACTTGTCAAACATGTACGAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCCAT
261 AACTTGTCAAACATGTACGAGTTCTATTATAACTTCGGCTCCTAAGAGTATTCAAGACGATCCAT
* * *
18047004 TCCTTCGACCAATATTTCGAACATTCTGTGCTTGAGAAATCATATCATTTGGTCTTTGAATTAAA
326 TCCTTCAACCAATATTTCGAAAATTCTGTGCTTAAGAAATCATATCATTTGGTCTTTGAATTAAA
18047069 AACTTA
391 AACTTA
* * ** **
18047075 TTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGATTAACTTTTGAACTTGTCAAACATTTACGA
1 TTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACAAACTTTCAAACTTGTCAAACATTTACGA
* * * * *
18047140 GTTCTTTTACAACTTTGGTTCCTGAGAGTATTCAAGATAATCCATTCCTTTGACCAATTTTCCAA
66 GTTCTTTTACAACTTCGGTTACTGAGAGTATTCAAGACAATCCATTCATTCGACCAATTTTCCAA
* * *
18047205 ACATTCCATGCTCAGGAAATCACATCATTTG-GTCAGATTATTTGTCATTTAGTAAACAACTTTT
131 ACATTCCATGCCCAGGAAATCACATCATTTGTG-CAAAGTATTTGTCATTTAGTAAACAACTTTT
* * * **
18047269 GGTCTTTGAATTAAAAAGTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTTC
195 GGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTC
* * * * * *
18047334 AAATTTGTCAAACATTTATGAGTTCTATTATAACTTCGGCTCTTAAGAGTATTTAGGACGATCCA
260 AAACTTGTCAAACATGTACGAGTTCTATTATAACTTCGGCTCCTAAGAGTATTCAAGACGATCCA
* * * * *
18047399 TTCCTTTAACTATTTTTTCGAAAATTCTGTGCTTAAGAAATCGTATCATTTGGTC
325 TTCCTTCAACCAATATTTCGAAAATTCTGTGCTTAAGAAATCATATCATTTGGTC
18047454 AAACTATTTG
Statistics
Matches: 330, Mismatches: 48, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
395 1 0.00
396 329 1.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (396 bp):
TTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACAAACTTTCAAACTTGTCAAACATTTACGA
GTTCTTTTACAACTTCGGTTACTGAGAGTATTCAAGACAATCCATTCATTCGACCAATTTTCCAA
ACATTCCATGCCCAGGAAATCACATCATTTGTGCAAAGTATTTGTCATTTAGTAAACAACTTTTG
GTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTCA
AACTTGTCAAACATGTACGAGTTCTATTATAACTTCGGCTCCTAAGAGTATTCAAGACGATCCAT
TCCTTCAACCAATATTTCGAAAATTCTGTGCTTAAGAAATCATATCATTTGGTCTTTGAATTAAA
AACTTA
Found at i:18047449 original size:215 final size:216
Alignment explanation
Indices: 18047051--18048361 Score: 1321
Period size: 215 Copynumber: 6.1 Consensus size: 216
18047041 AATCATATCA
* **
18047051 TTTGGTCTTTGAATTAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGATTAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * * **
18047116 TTTGAACTTGTCAAACATTTACGAGTTCTTTTACAACTTTGGTTCC-TGAGAGTATTCAAGATAA
66 TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACGA
* * * *
18047180 TCCATTCCTTTGACCAATTTTCCAAACATTCCATGCTCAGGAAATCACATCATTTGGTCAGATTA
131 TCCATTCCTTTAACCAATTTTCCAAACATTCCATGCTTAGGAAATCGCATCATTTGGTCAAATTA
*
18047245 TTTGTCATTTAGTAAACAACT
196 TTTGTCATTTTGTAAACAACT
* *
18047266 TTTGGTCTTTGAATTAAAAAGTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
18047331 TTCAAATTTGTCAAACATTTATGAGTTCTATTATAACTTCGGCT-CTTAAGAGTATTTAGGACGA
66 TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACGA
* * * ** * * *
18047395 TCCATTCCTTTAACTATTTTTTCGAAA-ATTCTGTGCTTAAGAAATCGTATCATTTGGTCAAACT
131 TCCATTCCTTTAACCA-ATTTTCCAAACATTCCATGCTTAGGAAATCGCATCATTTGGTCAAATT
* *
18047459 ATTTGTCTTTTTGTATACAACT
195 ATTTGTCATTTTGTAAACAACT
* * * * * *
18047481 ATTGGTCTATGAACTAAAAACTTATTCATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
18047546 TCCAAACTTGTCAAAC-TTTAATGAGTTCTTTTATAACTTCGGTTCCTTGA-AGTATTCAAGATG
66 TTCAAACTTGTCAAACATTT-ATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACG
* ** * * * * * *
18047609 ATCTATTCCTTCGACCTATTTCCCGAACATTCCATCCTTAGGAAATCGTATCATTTGGTTAAATT
130 ATCCATTCCTTTAACCAATTTTCCAAACATTCCATGCTTAGGAAATCGCATCATTTGGTCAAATT
* *
18047674 GTTTGTTATTTTGTAAACAACCT
195 ATTTGTCATTTTGTAAACAA-CT
*
18047697 TTT-GTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAAC-
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * * *
18047759 TTCAAAACTTATCAAAGGTTAATGAGTTCTTTTATAACTTTGATTCCTTAAG-GTATTCATGACG
66 TTC-AAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACG
** * * * *
18047823 ATCCATTCCTTCGACCAATTTTCCAAACATTCCATGC-TCGAGAAATTGCATCATTTCGTGAAAT
130 ATCCATTCCTTTAACCAATTTTCCAAACATTCCATGCTTAG-GAAATCGCATCATTTGGTCAAAT
18047887 TATTTGTCATTTTGTAAACAACT
194 TATTTGTCATTTTGTAAACAACT
* * * *
18047910 TTTGGTCTTTGAATT-AAAACTTATTTATGTGAGAATTATTTCTCTTTTGGTTCTTGGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
18047974 TAT-GAACTAGTCAAACTTTTATGAGTACTTTTATAACTT-GGGTCCTTTA-AGTATTTAAAGAC
66 T-TCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTA-TTCAAGAC
* * * * * * * *
18048036 GACCCATTCCTTTGAGCAATTTTCCAAACATTTCAAGCTTGGGAAATTGCATCATTAGGTCTAAA
129 GATCCATTCCTTTAACCAATTTTCCAAACATTCCATGCTTAGGAAATCGCATCATTTGGTC-AAA
*
18048101 -TAGTTTGTCATTTTTTCAAA-AACT
193 TTA-TTTGTCATTTTGT-AAACAACT
* * *
18048125 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * ** * * *
18048190 TTTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCC-TCAGAGTATTCAAGATGG
66 TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACGA
* * * * * * * * * *
18048254 TACAATCCATCAGCCAATATTT-CGAGCATTCCATG-ATCGAGAAATCGCATCATTAGGTCTAAA
131 TCCATTCCTTTAACCAAT-TTTCCAAACATTCCATGCTTAG-GAAATCGCATCATTTGGTC-AAA
* * *
18048317 -TAGTTTATAATTTTGTAAACATCT
193 TTA-TTTGTCATTTTGTAAACAACT
* * *
18048341 TTTTGTTTTTTAATTAAAAAC
1 TTTGGTCTTTGAATTAAAAAC
18048362 CTAATGAACT
Statistics
Matches: 905, Mismatches: 164, Indels: 53
0.81 0.15 0.05
Matches are distributed among these distances:
213 49 0.05
214 250 0.28
215 417 0.46
216 179 0.20
217 10 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACGA
TCCATTCCTTTAACCAATTTTCCAAACATTCCATGCTTAGGAAATCGCATCATTTGGTCAAATTA
TTTGTCATTTTGTAAACAACT
Found at i:18048514 original size:182 final size:182
Alignment explanation
Indices: 18048185--18048537 Score: 453
Period size: 182 Copynumber: 1.9 Consensus size: 182
18048175 GTTCTTAGAC
*
18048185 GAACTTTTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
1 GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
* * *
18048250 ATGGTACAATCCATCAGCCAATATTTCGAGCATTCCATGATCGAGAAATCGCATCATTAGGTCTA
66 ATGATACAATCCATCAGCCAATATTTCGAACAGTCCATGATCGAGAAATCGCATCATTAGGTCTA
* * * * *
18048315 AATAGTTTATAATTTTGTAAACATCTTTTTGTTTTTTAATTAAAAACCTAAT
131 AAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATTAAAAACCTAAT
* * * *
18048367 GAACTTCTGAACTTGTCAAATATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAG
1 GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
* * * * * *
18048432 ATGATCCATTTCTTC-GACCGAT-TTATCGAACAGTCCAT-AGTCG-GAAATTCGCATCATTTGG
66 ATGATACAATCCATCAG-CCAATATT-TCGAACAGTCCATGA-TCGAGAAA-TCGCATCATTAGG
* *
18048493 TCTAAAAAGTTTCTCATTTTGTAAACAACATTTTGTCTTTGAATT
127 TCTAAAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATT
18048538 CGCAAGGACC
Statistics
Matches: 146, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
181 8 0.05
182 138 0.95
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (182 bp):
GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
ATGATACAATCCATCAGCCAATATTTCGAACAGTCCATGATCGAGAAATCGCATCATTAGGTCTA
AAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATTAAAAACCTAAT
Found at i:18050808 original size:215 final size:214
Alignment explanation
Indices: 18050406--18051176 Score: 869
Period size: 215 Copynumber: 3.6 Consensus size: 214
18050396 TTTCATATCA
*
18050406 TCTTGCTTCTTGGACGAACTTCCGAACTAGAT-AAACTTTTTATGAGTTCTTTTATAACTTC-GA
1 TCTTGGTTCTTGGACGAACTTCCGAACTAG-TCAAAC-TTTTATGAGTTCTTTTATAACTTCAG-
* * * *
18050469 TTCCTTAAAGTATTCAAGGCTAT--TTCCTTCGACCAATTTTCCGATCATTCCATACTCGAGAAA
63 TTCCTTAAAGTATTCAAGACGATCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAA
* *
18050532 TTGCATCA-TTGGTCAGATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
128 TTGTATCATTTGGTCAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
18050596 ATTTACATGAGAATTGTTTTTC
193 ATTTACATGAGAATTGTTTTTC
* * * **
18050618 TCTGGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTGTAACTTTGGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTTC
* * * * *
18050683 CTTAAAGTATTCAAAGACGATCAGTTCCTTTGAGCAATTTTTCGATCATTCCATGCTCGGGAAAT
66 CTTAAAGTATTC-AAGACGATCA-TTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAAT
* * * *
18050748 TGTATCATTTGGTCTAAATAGTTT-TTATTTTTTAAACAACTTTTGGCCTTTGAA-TAAAAACTT
129 TGTATCATTTGGTC-AAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
*
18050811 ATTTACGTGAGAATTGTTTCTT-
193 ATTTACATGAGAATTGTTT-TTC
* * * ** * * * * *
18050833 TCTTGGTTCTAGGATGAACTTTCGAACTTCTCAAACATTTACGTGTTCTTTTAGAACTTTAGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTTC
* * * * * * * **
18050898 CTGAGATTATTCAAGACGCTCCCTTCCTTCGACCAATATTCTGAACATTCTGTGCTC-AGGAAAT
66 CTTAAAGTATTCAAGACGAT-CATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGA-GAAAT
** * * *
18050962 CATATCATTTGGCCAAATTGTTTGCCACTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
129 TGTATCATTTGGTCAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
*
18051027 TTTACATGAGAATTATTTTTC
194 TTTACATGAGAATTGTTTTTC
* * * *
18051048 TCTTGGTTCTTGGACGAAGTTACGAACTAG-CAAAACTTTTATGAGTTCTTATATGACTTCAGTT
1 TCTTGGTTCTTGGACGAACTTCCGAACTAGTC-AAACTTTTATGAGTTCTTTTATAACTTCAGTT
* * * *
18051112 CCTTAAAGTGTTCAAAGACGATCCATTCCTTTGAGCAATTTTCCAAACATTCCATGCTCGAGAAA
65 CCTTAAAGTATTC-AAGACGAT-CATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAA
18051177 AAGAATATTT
Statistics
Matches: 461, Mismatches: 81, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
211 38 0.08
212 38 0.08
213 8 0.02
214 77 0.17
215 217 0.47
216 75 0.16
217 8 0.02
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (214 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTTC
CTTAAAGTATTCAAGACGATCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATTG
TATCATTTGGTCAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
TACATGAGAATTGTTTTTC
Found at i:18051611 original size:215 final size:217
Alignment explanation
Indices: 18051193--18052147 Score: 880
Period size: 214 Copynumber: 4.4 Consensus size: 217
18051183 ATTTATGTGG
* *
18051193 GAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTCTGAACTTGTCAAACATTTACGAGTTCTTTTA
1 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC-AACATTTACGAGTTCTTTTA
* * * * *
18051258 TAACTTCGGTTAC-TGAGAGTATTCATGACGATCCATTCCTTCGACCAA-TTTTCTTAACATTCC
65 TAACTTCGATTACTTAAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTTTC-GAACATTCC
* * * * * ** *
18051321 ATGCTTG-GGAAATTGCATCATTTGGTCAAATTGTTTGTCATTTTGT-AAACTAGTTTTTGTTTT
129 ATGCTCGAGAAAATCGCATCATTTGGTCAAATAGTTTGTCATTCTGTAAAAC-AACTTTTGTCTT
18051384 TGAATTAAAAACTTATTTACT-TGA
193 TGAATTAAAAACTTATTTACTATGA
*
18051408 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAACATTTACGAGTTCTTTTAT
1 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAACATTTACGAGTTCTTTTAT
* * * **
18051473 AAGTTCGATT-CGTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCTGT
66 AACTTCGATTACTTAAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTTTCGAACATTCCAT
* * * **
18051537 GCTCGAG-AATTCGCATCATTTGGTCTAAAAAGTTTGTCATTCTGTAAAAAAAAATTTGTCTTTG
131 GCTCGAGAAAATCGCATCATTTGGTC-AAATAGTTTGTCATTCTGTAAAACAACTTTTGTCTTTG
*
18051601 AATCAAAAACTTATTTAC-ATGA
195 AATTAAAAACTTATTTACTATGA
* * * * *
18051623 GGAATAG-TTCTCTCCTT-CTTCTTGGATGAACTTCCGAACTAGTCAA-ATTTTTTACGGGTTCT
1 -GAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCCGAACTTGTCAACA---TTTACGAGTTCT
* * * * * * *
18051685 TTTATAGCTTTGGTTCCTTAAAGTAAGTATTCAAGGCGATCCATTCGTTCAACCAATTTTTCAAA
61 TTTATAACTTCGATTACTT-AAG--AGTATTCAAGACGATCCATTCCTTCAACCAATTTTTCGAA
* * * * * * ** *
18051750 CATTTCATACTCG-GTAAATCACATCATTTGGTCAGATTGTTTCACATTTTGT-AAACAACTTTT
123 CATTCCATGCTCGAGAAAATCGCATCATTTGGTCAAATAGTTTGTCATTCTGTAAAACAACTTTT
*
18051813 GGTCTTTGAATTAAAAACTTATTT-TTATGA
188 -GTCTTTGAATTAAAAACTTATTTACTATGA
* * * * * * *
18051843 GAATTGTTTTTCTCTGGGTTCTTAGATGAACTTTCGAACTTGTCAA-ACTTTAATGAGCTCTTTT
1 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAACA-TTT-ACGAGTTCTTTT
* * *
18051907 ATAACTTCGATTACTTAA-AGTATTCAAAGACGATCCATTCCTTTAAGCAATTTTTCGATCATTC
64 ATAACTTCGATTACTTAAGAGTATTC-AAGACGATCCATTCCTTCAACCAATTTTTCGAACATTC
* * * * * *
18051971 CATGCTCGA-AAAATCGCATAATTTGGTCTAAATAGGTAGTTA-GCT-TTAAACAACTTTTGTTC
128 CATGCTCGAGAAAATCGCATCATTTGGTC-AAATAGTTTGTCATTCTGTAAAACAACTTTTG-TC
*
18052033 TTTGAA--AAAAACTTATTTA-TGTGA
191 TTTGAATTAAAAACTTATTTACTATGA
* * * * * *
18052057 GAATTATTTCTCTCTTGGTT-TTAGGACGAACCTACGAACTTGTTAACCGTTTACAAGTTCTTTT
1 GAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTCCGAACTTGTCAA-CATTTACGAGTTCTTTT
* *
18052121 AGAACTTCTG-TT-CCTAAGAGTATTCAA
64 ATAACTTC-GATTACTTAAGAGTATTCAA
18052148 AATGATACAT
Statistics
Matches: 604, Mismatches: 104, Indels: 66
0.78 0.13 0.09
Matches are distributed among these distances:
213 9 0.01
214 167 0.28
215 137 0.23
216 85 0.14
217 28 0.05
218 7 0.01
219 39 0.06
220 71 0.12
221 61 0.10
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (217 bp):
GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAACATTTACGAGTTCTTTTAT
AACTTCGATTACTTAAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTTTCGAACATTCCAT
GCTCGAGAAAATCGCATCATTTGGTCAAATAGTTTGTCATTCTGTAAAACAACTTTTGTCTTTGA
ATTAAAAACTTATTTACTATGA
Found at i:18052740 original size:217 final size:216
Alignment explanation
Indices: 18052154--18052750 Score: 744
Period size: 215 Copynumber: 2.8 Consensus size: 216
18052144 TCAAAATGAT
*
18052154 ACATTCCGTGCTTGGGAAATCGCATCATTTGGTC-AAATTGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAACTTTT
* * * *
18052218 TGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTGTCTCTTGATTCTTGGATGAACTT-T
66 GGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGATTCTTGGACGAAGTTCT
* * * * * **
18052282 CGAACTTGTCAACCATTTACGAGTTCTTTTACAACTTCTGTTCTTAAGAGCATTTAAGATGATCC
131 -GAACTAGTCAAACATTTACGAGTTCTTTTATAACTTATGTTCTTAAGAGCATTAAAGACAATCC
18052347 ATTCTTTTGACCAATTTTCCAA
195 ATTCTTTTGACCAATTTTCCAA
* * * * * *
18052369 ACATTCCAAGCTTGGGAAATAGCATCATTTGGT-TAGATTGTTTGCCATTTAGTAAACAGCTTTT
1 ACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAACTTTT
* * * *
18052433 GGTCTTTGAATTAAAAACTTATTTACATGAGACTTGTTTTTCTCTT-AGTTCCTGGACTAAGTTA
66 GGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGA-TTCTTGGACGAAGTT-
* * * * *
18052497 C-GAACTAGTTAAACTTTTATGAGTTCTTATATAACTTATGTTCCTTAA-AGTATTCAAAGACAA
129 CTGAACTAGTCAAACATTTACGAGTTCTTTTATAACTTATGTT-CTTAAGAGCATT-AAAGACAA
* *
18052560 TCCATTAC-TTTGAGCGATTTTCCAA
192 TCCATT-CTTTTGACCAATTTTCCAA
* * *
18052585 ACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAACTTTT
* *
18052650 GGTCTTTAAATTAAAAACTT-TTT-TATGTAGGAATTGTTTCTCTCTTGATTCTTGGACGAAGTT
66 GGTCTTTGAATTAAAAACTTATTTACATG-A-GAATTGTTTCTCTCTTGATTCTTGGACGAAGTT
*
18052713 CTAAACTAGTCAAACATTTACGAGTTCTTTTATAACTT
129 CTGAACTAGTCAAACATTTACGAGTTCTTTTATAACTT
18052751 TGATTACTGG
Statistics
Matches: 322, Mismatches: 48, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
214 1 0.00
215 151 0.47
216 65 0.20
217 104 0.32
218 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (216 bp):
ACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAACTTTT
GGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGATTCTTGGACGAAGTTCT
GAACTAGTCAAACATTTACGAGTTCTTTTATAACTTATGTTCTTAAGAGCATTAAAGACAATCCA
TTCTTTTGACCAATTTTCCAA
Found at i:18053526 original size:74 final size:74
Alignment explanation
Indices: 18053436--18053580 Score: 254
Period size: 74 Copynumber: 2.0 Consensus size: 74
18053426 CAAAATGAGA
* *
18053436 GTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAGAAACTCCTGAATGAA
1 GTGAACAACCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCCTGAATGAA
18053501 ACATTGAAT
66 ACATTGAAT
* *
18053510 GTGAACAGCCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCTTGAATGAA
1 GTGAACAACCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCCTGAATGAA
18053575 ACATTG
66 ACATTG
18053581 TATCCCTCCA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 67 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (74 bp):
GTGAACAACCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCCTGAATGAA
ACATTGAAT
Found at i:18057061 original size:17 final size:17
Alignment explanation
Indices: 18057041--18057073 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
18057031 AAAACACTTA
18057041 TTAAACTAAAA-TAAAAC
1 TTAAA-TAAAATTAAAAC
18057058 TTAAATAAAATTAAAA
1 TTAAATAAAATTAAAA
18057074 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAATAAAATTAAAAC
Found at i:18058465 original size:32 final size:32
Alignment explanation
Indices: 18058413--18058475 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
18058403 GCCATCCATA
* * *
18058413 CATGTACCTGAAATATATTAATCAGCTAATTG
1 CATGTACCTAAAACACATTAATCAGCTAATTG
**
18058445 CATGTACCTAAAACACATTAATTTGCTAATT
1 CATGTACCTAAAACACATTAATCAGCTAATT
18058476 AATTTCAGCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (32 bp):
CATGTACCTAAAACACATTAATCAGCTAATTG
Found at i:18059031 original size:182 final size:182
Alignment explanation
Indices: 18058702--18059054 Score: 435
Period size: 182 Copynumber: 1.9 Consensus size: 182
18058692 GTTCTTAGAC
*
18058702 GAACTTTTGAACTTGTCAAACATTTACGAGTTCTTTCAAAACTTCAATTCCTCAGAGTATTCAAG
1 GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCAAAACTTCAATTCCTCAGAGTATTCAAG
* * *
18058767 ATGTTACATTCCATCAGCCAATATTCCGAGCATTCCATGATCGAGAAATCGCATCATTAGGTCTA
66 ATGATACATTCCATCAGCCAATATTCCGAACAGTCCATGATCGAGAAATCGCATCATTAGGTCTA
* * * * *
18058832 AATAGTTTATAATTTTGTAAACATCTTTTTGTTTTTTAATTAAAAACCTAAT
131 AAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATTAAAAACCTAAT
* * * ** *
18058884 GAACTTCTGAACTTGTCAAATATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAG
1 GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCAAAACTTCAATTCCTCAGAGTATTCAAG
* * * * * *
18058949 ATGATCCATTTCTTC-GACCGAT-TTGTCGAACAGTCCAT-AGTCG-GAAATTCGCATCATTTGG
66 ATGATACATTCCATCAG-CCAATATT-CCGAACAGTCCATGA-TCGAGAAA-TCGCATCATTAGG
* *
18059010 TCTAAAAAGTTTCTCATTTTGTAAACAACATTTTGTCTTTGAATT
127 TCTAAAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATT
18059055 CACAAGGACC
Statistics
Matches: 144, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
181 8 0.06
182 136 0.94
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (182 bp):
GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCAAAACTTCAATTCCTCAGAGTATTCAAG
ATGATACATTCCATCAGCCAATATTCCGAACAGTCCATGATCGAGAAATCGCATCATTAGGTCTA
AAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATTAAAAACCTAAT
Found at i:18062253 original size:18 final size:17
Alignment explanation
Indices: 18062187--18062253 Score: 53
Period size: 18 Copynumber: 3.8 Consensus size: 17
18062177 TTTTTTTCCT
* * *
18062187 TTTTTTTAAACTTTGAA
1 TTTTTTTCAATTTTCAA
*
18062204 TTTTTTTCAATATTTCGA
1 TTTTTTTCAAT-TTTCAA
**
18062222 TTTTTTTCTTTTTTCAAA
1 TTTTTTTCAATTTTC-AA
*
18062240 TTTTTTTCACTTTT
1 TTTTTTTCAATTTT
18062254 TTCGAAACAT
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
17 13 0.33
18 26 0.67
ACGTcount: A:0.19, C:0.10, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTTTTTCAATTTTCAA
Found at i:18063508 original size:38 final size:38
Alignment explanation
Indices: 18063466--18063563 Score: 187
Period size: 38 Copynumber: 2.6 Consensus size: 38
18063456 TTAATTTGTC
*
18063466 TCAAACTTAGACACATTAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAACAACTATTAAATATGTA
18063504 TCAAACTAAGACACATTAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAACAACTATTAAATATGTA
18063542 TCAAACTAAGACACATTAAAAC
1 TCAAACTAAGACACATTAAAAC
18063564 CTCATTTAAT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.52, C:0.17, G:0.05, T:0.26
Consensus pattern (38 bp):
TCAAACTAAGACACATTAAAACAACTATTAAATATGTA
Found at i:18063510 original size:19 final size:19
Alignment explanation
Indices: 18063488--18063549 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
18063478 ACATTAAAAC
18063488 AACTATTAAATATGTATCA
1 AACTATTAAATATGTATCA
** * * **
18063507 AACTAAGACACAT-TAAAA
1 AACTATTAAATATGTATCA
18063525 CAACTATTAAATATGTATCA
1 -AACTATTAAATATGTATCA
18063545 AACTA
1 AACTA
18063550 AGACACATTA
Statistics
Matches: 29, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
18 3 0.10
19 23 0.79
20 3 0.10
ACGTcount: A:0.52, C:0.15, G:0.05, T:0.29
Consensus pattern (19 bp):
AACTATTAAATATGTATCA
Found at i:18065815 original size:18 final size:18
Alignment explanation
Indices: 18065792--18065828 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
18065782 TTTTAGGAGC
*
18065792 ATTCTGTCCCCATTTAGA
1 ATTCTGACCCCATTTAGA
*
18065810 ATTCTGACTCCATTTAGA
1 ATTCTGACCCCATTTAGA
18065828 A
1 A
18065829 GTAGAAGAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (18 bp):
ATTCTGACCCCATTTAGA
Found at i:18068428 original size:23 final size:24
Alignment explanation
Indices: 18068386--18068440 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
18068376 TGTATGGGTA
*
18068386 TCTTCTTGTTTTTCATTTTCATTT
1 TCTTCTTGTTTTTCAGTTTCATTT
*
18068410 TCTTCTTG-TTTTCAGTTTCTTTT
1 TCTTCTTGTTTTTCAGTTTCATTT
*
18068433 TCCTCTTG
1 TCTTCTTG
18068441 AGAACTCTCC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 20 0.71
24 8 0.29
ACGTcount: A:0.05, C:0.20, G:0.07, T:0.67
Consensus pattern (24 bp):
TCTTCTTGTTTTTCAGTTTCATTT
Found at i:18070991 original size:218 final size:214
Alignment explanation
Indices: 18070532--18071304 Score: 823
Period size: 218 Copynumber: 3.6 Consensus size: 214
18070522 TTTCATATCA
*
18070532 TCTTGCTTCTTGGACGAACTTCCGAACTAGAT-AAACTTTTTATGAGTTCTTTTATAACTTC-GA
1 TCTTGGTTCTTGGACGAACTTCCGAACTAG-TCAAAC-TTTTATGAGTTCTTTTATAACTTCAG-
* * * *
18070595 TTCCTTAAAGTATTCAAGGCTA-CATTCCTTCGACCAATTTTCCGATCATTCCATACTCGAGAAA
63 TTCCTTAAAGTATTCAAGACGATCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAA
* *
18070659 TTGCATCA-TTGG-TCAGATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
128 TTGTATCATTTGGCTCAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
18070722 TATTTACATGAGAATTGTTTTT
193 TATTTACATGAGAATTGTTTTT
* * * **
18070744 CTCTGGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTGTAACTTTGGTT
1 -TCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTT
* * * * *
18070809 CCTTAAAGTATTCAAAGACGATCAGTTCCTTTGAGCAATTTTTCGATCATTCCATGCTCGGGAAA
65 CCTTAAAGTATTC-AAGACGATCA-TTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAA
* * * * *
18070874 TTGTATCATTTGGTCTCTAAATAGTTTTTTATTTTTTAAACAACTTTTGGCCTTTGAA-TAAAAA
128 TTGTATCATTTGG-CTC-AAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
*
18070938 CTTATTTACGTGAGAATTGTTTCTT
191 CTTATTTACATGAGAATTGTTT-TT
* * * ** * * * * *
18070963 TCTTGGTTCTAGGATGAACTTTCGAACTTCTCAAACATTTACGTGTTCTTTTAGAACTTTAGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTTC
* * * * * * * **
18071028 CTGAGATTATTCAAGACGCTCCCTTCCTTCGACCAATATTCTGAACATTCTGTGCTC-AGGAAAT
66 CTTAAAGTATTCAAGACGAT-CATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGA-GAAAT
** * *
18071092 CATATCATTTGGC-CAAATTGTTTGCCACTTTGTAAACAACTTTT-GTCTTTGAATTAAAAACTT
129 TGTATCATTTGGCTCAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
*
18071155 ATTTACATGAGAATT-ATTTT
194 ATTTACATGAGAATTGTTTTT
* * * *
18071175 TCTTGGTTCTTGGACGAAGTTACGAACTAG-CAAAACTTTTATGAG-TCTTATATGACTTCAGTT
1 TCTTGGTTCTTGGACGAACTTCCGAACTAGTC-AAACTTTTATGAGTTCTTTTATAACTTCAGTT
* * * *
18071238 CCTTAAAGTGTTCAAAGACGATCATCATTCCTTTGAGCAATTTTCCAAACATTCCATGCTCGAGA
65 CCTTAAAGTATTC-AAGACG---ATCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGA
18071303 AA
126 AA
18071305 AAGAATATTT
Statistics
Matches: 459, Mismatches: 82, Indels: 37
0.79 0.14 0.06
Matches are distributed among these distances:
211 24 0.05
212 80 0.17
213 47 0.10
214 81 0.18
215 45 0.10
216 5 0.01
217 48 0.10
218 93 0.20
219 36 0.08
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (214 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTTC
CTTAAAGTATTCAAGACGATCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATTG
TATCATTTGGCTCAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
TTACATGAGAATTGTTTTT
Found at i:18071903 original size:218 final size:214
Alignment explanation
Indices: 18071321--18072124 Score: 605
Period size: 218 Copynumber: 3.7 Consensus size: 214
18071311 ATTTATGTGG
* * * ** *
18071321 GAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTCTGAACTTGTCAAACATTTACGAGTTCTTTTA
1 GAATAGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTAGTCAAACATTTACGAGTTC-TTTA
* * * * * *
18071386 TAACTTCGGTTACTGAGAGTATTCATGACGATCCATTCCTTCGACCAATTTCTT--AACATTCCA
65 TAAGTTCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCAACCAATTT-TTCAAACATTCCA
* * * ** * ** ** *** *
18071449 TGCTTGGGAAATTGCATCATTTGGTC-AAATTGTTTGTCATTTTGT-AAACTAGTTTTGTTTTTG
129 TACTCGAGAAATCACATCATTTGGTCTAAA-AGTTTGTCATTCAGTAAAAAAAAAATTGTCTTTG
* *
18071512 AATTAAAAACTTATTTACTTGA
193 AATCAAAAACTTATTTACATGA
* * *
18071534 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTACGAGTTCTTTAT
1 GAATAGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTAGTCAAACATTTACGAGTTCTTTAT
* * * * *
18071599 AAGTTCGATTCGTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCGTG
66 AAGTTCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTTTCAAACATTCCATA
* *
18071664 CTCGAGAATTCGCATCATTTGGTCTAAAAGTTTGTCATTCAGTAAAAAAAAAATTGTCTTTGAAT
131 CTCGAGAAATCACATCATTTGGTCTAAAAGTTTGTCATTCAGTAAAAAAAAAATTGTCTTTGAAT
18071729 CAAAAACTTATTTACATGA
196 CAAAAACTTATTTACATGA
* * ** *
18071748 GGAATAG-TTCTCTCCTT-CTTCTTGGATGAACTTCCGAACTAGTCAAATTTTTTACGGGTTCTT
1 -GAATAGTTTCTCT-CTTGCTTCTTGGACGAACTTCCAAACTAGTCAAA-CATTTACGAGTTCTT
* * **
18071811 TAT-AGCTTTGGTTCCTAAAGTAAGTATTCAAGGTGATCCATTCCTTCAACCAATTTTTCAAACA
63 TATAAG-TTCGATTCCT-AAG--AGTATTCAAGACGATCCATTCCTTCAACCAATTTTTCAAACA
* ** ** ** * ***
18071875 TTTCATACTCG-GTAAATCACATCATTTGGTC-AGATTGTTTCACATTTTGT-AAACAACTTTTG
124 TTCCATACTCGAG-AAATCACATCATTTGGTCTA-AAAGTTTGTCATTCAGTAAAAAAAAAATT-
* **
18071937 GTCTTTGAATTAAAAACTTATTTTTATGA
186 GTCTTTGAATCAAAAACTTATTTACATGA
* * * * * * * * *
18071966 GAATTGTTT-TCTCTGGGGTTCTTAGATGAACTGT-CGAACTTGTCAAAC-TTTAATGAGCTCTT
1 GAATAGTTTCTCTCT-TGCTTCTTGGACGAACT-TCCAAACTAGTCAAACATTT-ACGAGTTC-T
* * * * * *
18072028 TTATAACTTCGATTACTTAA-AGTATTCAAAGACGATCCATTCCTTTAAGCAATTTTTTCGATCA
62 TTATAAGTTCGATT-CCTAAGAGTATTC-AAGACGATCCATTCCTTCAACCAA-TTTTTCAAACA
* * *
18072092 TTCCATGCTCGA-AAATCGCAT-AATTGGTCTAAA
124 TTCCATACTCGAGAAATCACATCATTTGGTCTAAA
18072125 TAGGTAGTTA
Statistics
Matches: 483, Mismatches: 82, Indels: 50
0.79 0.13 0.08
Matches are distributed among these distances:
211 2 0.00
212 49 0.10
213 99 0.20
214 69 0.14
215 45 0.09
216 37 0.08
217 40 0.08
218 138 0.29
219 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (214 bp):
GAATAGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTAGTCAAACATTTACGAGTTCTTTAT
AAGTTCGATTCCTAAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTTTCAAACATTCCATA
CTCGAGAAATCACATCATTTGGTCTAAAAGTTTGTCATTCAGTAAAAAAAAAATTGTCTTTGAAT
CAAAAACTTATTTACATGA
Found at i:18072243 original size:432 final size:426
Alignment explanation
Indices: 18071310--18072874 Score: 1082
Period size: 432 Copynumber: 3.7 Consensus size: 426
18071300 AGAAAAAGAA
* * * * *
18071310 TATTTATGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAA-GTTCTGAACTTGTCAAACATTTA
1 TATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACCTAC-GAACTTGTAAAACATTTA
* * *
18071374 CGAGTTCTTTTATAACTTCGGTTACTGAGAGTATTCATGACGATCCATTCCTTCGACCAATTTCT
65 CGAGTTC-TTTATAACTTCGGTTACTAAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTCT
* * ** ** * *
18071439 TAACATTCCATGCTTGGGAAATTGCATCATTTGGTCAAATTGTTTGTCATTTTGTAAACTAGTTT
129 TAACATTCCATACTCGGGAAATCACATCATTTGGTCAAATTGTTTCACATTTTGTAAACAACTTT
* * *
18071504 TGTTTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
194 TGTCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTGGGTTCTTAGACGAACTTCC
* *
18071569 AAACTTGTCAAACATTTACGAGTTCTTTATAAGTTCGATTCGTAAGAGTATTCAAGACGATCCAT
259 AAACTTGTCAAACATTTACGAGCTCTTTATAACTTCGATTCGTAAGAGTATTCAAGACGATCCAT
* * * * * *
18071634 TCCTTCGACCAATTTTTCGAACATTCCGTGCTCGAGAATTCGCATCATTTGGTCTAAAAGTTTGT
324 TCCTTCAACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCAATTGGTCTAAAAGGTAGT
* *
18071699 CATTCAGTAAAAAAAAAATTGTCTTTGAATCAAAAACT
389 CATGCAGTAAAAAAAAAATTGTCTTTGAATAAAAAACT
** * * * * * * ***
18071737 TATTTACATGAGGAA-TAGTTCTCTCCTT-CTTCTTGGATGAACTTCCGAACTAGTCAAATTTTT
1 TATTTATGTGA-GAATTATTTCTCT-CTTGGTTCTTGGACGAACCTACGAACTTGT-AAAACATT
* * * * **
18071800 TACGGGTTCTTTATAGCTTTGGTTCCTAAAGTAAGTATTCAAGGTGATCCATTCCTTCAACCAAT
63 TACGAGTTCTTTATAACTTCGGTTACT-AAG--AGTATTCAAGACGATCCATTCCTTCAACCAAT
* * *
18071865 TT-TTCAAACATTTCATACTCGGTAAATCACATCATTTGGTCAGATTGTTTCACATTTTGTAAAC
125 TTCTT--AACATTCCATACTCGGGAAATCACATCATTTGGTCAAATTGTTTCACATTTTGTAAAC
*
18071929 AACTTTTGGTCTTTGAATTAAAAACTTATTT-TTATGAGAATTGTTT-TCTCTGGGGTTCTTAGA
188 AACTTTT-GTCTTTGAATTAAAAACTTATTTACT-TGAGAATTGTTTCTCTCT-GGGTTCTTAGA
* * * *
18071992 TGAACTGT-CGAACTTGTCAAAC-TTTAATGAGCTCTTTTATAACTTCGATTACTTAA-AGTATT
250 CGAACT-TCCAAACTTGTCAAACATTT-ACGAGCTC-TTTATAACTTCGATT-CGTAAGAGTATT
* * *
18072054 CAAAGACGATCCATTCCTTTAAGCAATTTTTTCGATCATTCCATGCTCGA-AAATCGCAT-AATT
311 C-AAGACGATCCATTCCTTCAACCAA-TTTTTCGAACATTCCATGCTCGAGAAATCGCATCAATT
* * * * ***
18072117 GGTCTAAATAGGTAGTTA-GC-TTTAAACAACTTTTGTTCTTTGAA-AAAAAACT
374 GGTCTAAA-AGGTAGTCATGCAGTAAAAAAAAAATTG-TCTTTGAATAAAAAACT
* * *
18072169 TATTTATGTGAGAATTATTTCTCTCTTGGTT-TTAGGACGAACCTACGAAACTTGTTAACCGTTT
1 TATTTATGTGAGAATTATTTCTCTCTTGGTTCTT-GGACGAACCTACG-AACTTGTAAAACATTT
* * * * *
18072233 ACAAGTTCTTTTAGAACTTCTGTTCCTAAGAGTATTCAA-A--AT-GA-----T--A-C-A-TTC
64 ACGAGTTC-TTTATAACTTCGGTTACTAAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTC
* * * **
18072284 ----C-GTGC-T--T-GGGAAATCGCATCATTTGGTCAAATTGTTTGTCATTTTGTAAACAACTT
128 TTAACATTCCATACTCGGGAAATCACATCATTTGGTCAAATTGTTTCACATTTTGTAAACAACTT
* * * * * *
18072340 TTGTCTTTGAATT-AAAACTTATTTACATGAGAATTGTTTGTCTCTTGATTCTTGGATGAACTT-
193 TTGTCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTGGGTTCTTAGACGAACTTC
* * * * * * * * *
18072403 CGAACTTGTCAACCATTTACGAGTTCTTTACAACTTCTGGTTCTTAAGAGCATTTAAGATGATCC
258 CAAACTTGTCAAACATTTACGAGCTCTTTATAACTTC-GATTCGTAAGAGTATTCAAGACGATCC
* ** * * * * * * * ** *
18072468 ATTCTTTTGACCAATTTTCCAAACATTCCAAGCTTGGGAAATAGCATCATTTGGT-TAGATTGTT
322 ATTCCTTCAACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCAATTGGTCTA-AAAGGT
* * ** * **** *
18072532 TGCCATTTAGT-AAACAGCTTTTGGTCTTTGAATTAAAAACT
386 AGTCATGCAGTAAAAAAAAAATT-GTCTTTGAATAAAAAACT
** * * * * * * ** * * * *
18072573 TATTTACATGAGACTTGTTTTTCTCTTAGTTCCTGGACTAAGTTACGAACTAGTTAAACTTTTAT
1 TATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACCTACGAACTTGTAAAACATTTAC
** * * * * * * *
18072638 GAGTTCTTATATAACTTATGTTCCTTAA-AGTATTCAAAGACAATCCATTACTTTGAGCGATTTT
66 GAGTTCTT-TATAACTTCGGTTAC-TAAGAGTATTC-AAGACGATCCATT-CCTTCAACCAATTT
** * * **
18072702 CCAAACATTCCATGCTCGGGAAATCGA-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
127 CTTAACATTCCATACTCGGGAAATC-ACATCATTTGGTC-AAATTGTTTCACATTTTGTAAACAA
* * * * * *
18072766 CTTTTGGTCTTTAAATT-AAAACTTTTTTACGT-AGGAATTGTTTCTCTCTTGATTCTTGGACGA
190 CTTTT-GTCTTTGAATTAAAAACTTATTTACTTGA-GAATTGTTTCTCTCTGGGTTCTTAGACGA
* * * * *
18072829 AGTTCTAAACTAGTCAAACA-TTACGAGTTCTTTTATAACTTTGATT
253 ACTTCCAAACTTGTCAAACATTTACGAGCTC-TTTATAACTTCGATT
18072875 ACTGGGAGTA
Statistics
Matches: 904, Mismatches: 162, Indels: 141
0.75 0.13 0.12
Matches are distributed among these distances:
401 17 0.02
402 51 0.06
403 92 0.10
404 89 0.10
405 18 0.02
406 46 0.05
407 3 0.00
408 1 0.00
409 1 0.00
410 2 0.00
411 1 0.00
414 1 0.00
416 2 0.00
417 1 0.00
418 1 0.00
419 4 0.00
421 1 0.00
423 1 0.00
424 2 0.00
425 1 0.00
426 1 0.00
427 51 0.06
428 41 0.05
429 32 0.04
430 105 0.12
431 91 0.10
432 126 0.14
433 62 0.07
434 39 0.04
435 21 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (426 bp):
TATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACCTACGAACTTGTAAAACATTTAC
GAGTTCTTTATAACTTCGGTTACTAAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTCTTA
ACATTCCATACTCGGGAAATCACATCATTTGGTCAAATTGTTTCACATTTTGTAAACAACTTTTG
TCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTGGGTTCTTAGACGAACTTCCAA
ACTTGTCAAACATTTACGAGCTCTTTATAACTTCGATTCGTAAGAGTATTCAAGACGATCCATTC
CTTCAACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCAATTGGTCTAAAAGGTAGTCA
TGCAGTAAAAAAAAAATTGTCTTTGAATAAAAAACT
Found at i:18072725 original size:216 final size:212
Alignment explanation
Indices: 18072278--18072869 Score: 703
Period size: 216 Copynumber: 2.8 Consensus size: 212
18072268 TCAAAATGAT
* *
18072278 ACATTCCGTGCTTGGGAAATCGCATCATTTGGTCAAATTGTTTGTCATTTTGTAAACAACTTTT-
1 ACATTCCATGCTTGGGAAATCGCATCATTTGGTTAAATTGTTTGTCATTTTGTAAACAACTTTTG
* *
18072342 GTCTTTGAATTAAAACTTATTTACATGAGAATTGTTTGTCTCTTGATTCTTGGA-TGAACTTCGA
66 GTCTTTGAATTAAAACTTATTTACATGAGAATTGTTTCTCTCTTGATTCTTGGACT-AAGTTCGA
* * * * * **
18072406 ACTTGTCAACCATTTACGAGTTCTTTACAACTTCTGGTTCTTAAGAGCATTTAAGATGATCCATT
130 ACTAGTCAAAC-TTTACGAGTTCTTTATAACTTATGGTTCTTAAGAGCATTAAAGACAATCCATT
18072471 CTTTTGACCAATTTTCCAA
194 CTTTTGACCAATTTTCCAA
* * * * * *
18072490 ACATTCCAAGCTTGGGAAATAGCATCATTTGGTTAGATTGTTTGCCATTTAGTAAACAGCTTTTG
1 ACATTCCATGCTTGGGAAATCGCATCATTTGGTTAAATTGTTTGTCATTTTGTAAACAACTTTTG
* * *
18072555 GTCTTTGAATTAAAAACTTATTTACATGAGACTTGTTTTTCTCTT-AGTTCCTGGACTAAGTTAC
66 GTCTTTGAATT-AAAACTTATTTACATGAGAATTGTTTCTCTCTTGA-TTCTTGGACTAAGTT-C
* * *
18072619 GAACTAGTTAAACTTTTATGAGTTCTTATATAACTTAT-GTTCCTTAA-AGTATTCAAAGACAAT
128 GAACTAGTCAAAC-TTTACGAGTTCTT-TATAACTTATGGTT-CTTAAGAGCATT-AAAGACAAT
* *
18072682 CCATTAC-TTTGAGCGATTTTCCAA
189 CCATT-CTTTTGACCAATTTTCCAA
* * *
18072706 ACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTTGGGAAATCGCATCATTTGGT-TAAATTGTTTGTCATTTTGTAAACAACTTTT
* * * *
18072771 GGTCTTTAAATTAAAACTTTTTTACGT-AGGAATTGTTTCTCTCTTGATTCTTGGACGAAGTTCT
65 GGTCTTTGAATTAAAACTTATTTACATGA-GAATTGTTTCTCTCTTGATTCTTGGACTAAGTTC-
* *
18072835 AAACTAGTCAAACATTACGAGTTCTTTTATAACTT
128 GAACTAGTCAAACTTTACGAGTTC-TTTATAACTT
18072870 TGATTACTGG
Statistics
Matches: 321, Mismatches: 45, Indels: 25
0.82 0.12 0.06
Matches are distributed among these distances:
212 56 0.17
213 12 0.04
214 42 0.13
215 51 0.16
216 121 0.38
217 39 0.12
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (212 bp):
ACATTCCATGCTTGGGAAATCGCATCATTTGGTTAAATTGTTTGTCATTTTGTAAACAACTTTTG
GTCTTTGAATTAAAACTTATTTACATGAGAATTGTTTCTCTCTTGATTCTTGGACTAAGTTCGAA
CTAGTCAAACTTTACGAGTTCTTTATAACTTATGGTTCTTAAGAGCATTAAAGACAATCCATTCT
TTTGACCAATTTTCCAA
Found at i:18073645 original size:74 final size:74
Alignment explanation
Indices: 18073555--18073699 Score: 254
Period size: 74 Copynumber: 2.0 Consensus size: 74
18073545 CAAAATGAGA
* *
18073555 GTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAGAAACTCCTGAATGAA
1 GTGAACAACCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCCTGAATGAA
18073620 ACATTGAAT
66 ACATTGAAT
* *
18073629 GTGAACAGCCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCTTGAATGAA
1 GTGAACAACCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCCTGAATGAA
18073694 ACATTG
66 ACATTG
18073700 TATCCCTCCA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 67 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (74 bp):
GTGAACAACCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCCTGAATGAA
ACATTGAAT
Found at i:18077178 original size:17 final size:17
Alignment explanation
Indices: 18077158--18077190 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
18077148 AAAACACTTA
18077158 TTAAACTAAAA-TAAAAC
1 TTAAA-TAAAATTAAAAC
18077175 TTAAATAAAATTAAAA
1 TTAAATAAAATTAAAA
18077191 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAATAAAATTAAAAC
Found at i:18078582 original size:32 final size:32
Alignment explanation
Indices: 18078530--18078592 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
18078520 GCCATCCATA
* * *
18078530 CATGTACCTGAAATATATTAATCAGCTAATTG
1 CATGTACCTAAAACACATTAATCAGCTAATTG
**
18078562 CATGTACCTAAAACACATTAATTTGCTAATT
1 CATGTACCTAAAACACATTAATCAGCTAATT
18078593 AATTTCAGCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (32 bp):
CATGTACCTAAAACACATTAATCAGCTAATTG
Found at i:18079148 original size:182 final size:182
Alignment explanation
Indices: 18078819--18079171 Score: 435
Period size: 182 Copynumber: 1.9 Consensus size: 182
18078809 GTTCTTAGAC
*
18078819 GAACTTTTGAACTTGTCAAACATTTACGAGTTCTTTCAAAACTTCAATTCCTCAGAGTATTCAAG
1 GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCAAAACTTCAATTCCTCAGAGTATTCAAG
* * *
18078884 ATGTTACATTCCATCAGCCAATATTCCGAGCATTCCATGATCGAGAAATCGCATCATTAGGTCTA
66 ATGATACATTCCATCAGCCAATATTCCGAACAGTCCATGATCGAGAAATCGCATCATTAGGTCTA
* * * * *
18078949 AATAGTTTATAATTTTGTAAACATCTTTTTGTTTTTTAATTAAAAACCTAAT
131 AAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATTAAAAACCTAAT
* * * ** *
18079001 GAACTTCTGAACTTGTCAAATATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAG
1 GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCAAAACTTCAATTCCTCAGAGTATTCAAG
* * * * * *
18079066 ATGATCCATTTCTTC-GACCGAT-TTGTCGAACAGTCCAT-AGTCG-GAAATTCGCATCATTTGG
66 ATGATACATTCCATCAG-CCAATATT-CCGAACAGTCCATGA-TCGAGAAA-TCGCATCATTAGG
* *
18079127 TCTAAAAAGTTTCTCATTTTGTAAACAACATTTTGTCTTTGAATT
127 TCTAAAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATT
18079172 CACAAGGACC
Statistics
Matches: 144, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
181 8 0.06
182 136 0.94
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (182 bp):
GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCAAAACTTCAATTCCTCAGAGTATTCAAG
ATGATACATTCCATCAGCCAATATTCCGAACAGTCCATGATCGAGAAATCGCATCATTAGGTCTA
AAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATTAAAAACCTAAT
Found at i:18082369 original size:18 final size:17
Alignment explanation
Indices: 18082303--18082369 Score: 53
Period size: 18 Copynumber: 3.8 Consensus size: 17
18082293 TTTTTTTCCT
* * *
18082303 TTTTTTTAAACTTTGAA
1 TTTTTTTCAATTTTCAA
*
18082320 TTTTTTTCAATATTTCGA
1 TTTTTTTCAAT-TTTCAA
**
18082338 TTTTTTTCTTTTTTCAAA
1 TTTTTTTCAATTTTC-AA
*
18082356 TTTTTTTCACTTTT
1 TTTTTTTCAATTTT
18082370 TTCGAAACAT
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
17 13 0.33
18 26 0.67
ACGTcount: A:0.19, C:0.10, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTTTTTCAATTTTCAA
Found at i:18083624 original size:38 final size:38
Alignment explanation
Indices: 18083582--18083679 Score: 187
Period size: 38 Copynumber: 2.6 Consensus size: 38
18083572 TTAATTTGTC
*
18083582 TCAAACTTAGACACATTAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAACAACTATTAAATATGTA
18083620 TCAAACTAAGACACATTAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAACAACTATTAAATATGTA
18083658 TCAAACTAAGACACATTAAAAC
1 TCAAACTAAGACACATTAAAAC
18083680 CTCATTTAAT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.52, C:0.17, G:0.05, T:0.26
Consensus pattern (38 bp):
TCAAACTAAGACACATTAAAACAACTATTAAATATGTA
Found at i:18083626 original size:19 final size:19
Alignment explanation
Indices: 18083604--18083665 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
18083594 ACATTAAAAC
18083604 AACTATTAAATATGTATCA
1 AACTATTAAATATGTATCA
** * * **
18083623 AACTAAGACACAT-TAAAA
1 AACTATTAAATATGTATCA
18083641 CAACTATTAAATATGTATCA
1 -AACTATTAAATATGTATCA
18083661 AACTA
1 AACTA
18083666 AGACACATTA
Statistics
Matches: 29, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
18 3 0.10
19 23 0.79
20 3 0.10
ACGTcount: A:0.52, C:0.15, G:0.05, T:0.29
Consensus pattern (19 bp):
AACTATTAAATATGTATCA
Found at i:18085932 original size:18 final size:18
Alignment explanation
Indices: 18085909--18085945 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
18085899 TTTTAGGAGC
*
18085909 ATTCTGTCCCCATTTAGA
1 ATTCTGACCCCATTTAGA
*
18085927 ATTCTGACTCCATTTAGA
1 ATTCTGACCCCATTTAGA
18085945 A
1 A
18085946 GTAGAAGAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (18 bp):
ATTCTGACCCCATTTAGA
Found at i:18088532 original size:24 final size:24
Alignment explanation
Indices: 18088500--18088555 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
18088490 TGTATGGGTA
*
18088500 TCTTCTTGTTTTTCATTTTCATTT
1 TCTTCTTGTTTTTCAGTTTCATTT
*
18088524 TCTTCTTGTTTTTCAGTTTCTTTT
1 TCTTCTTGTTTTTCAGTTTCATTT
*
18088548 TCCTCTTG
1 TCTTCTTG
18088556 AGAACTCTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.05, C:0.20, G:0.07, T:0.68
Consensus pattern (24 bp):
TCTTCTTGTTTTTCAGTTTCATTT
Found at i:18092228 original size:23 final size:25
Alignment explanation
Indices: 18092182--18092253 Score: 85
Period size: 23 Copynumber: 3.0 Consensus size: 25
18092172 ATCTGATATT
* * * *
18092182 TTTCATTTCATTTCATTTCGTTTCG
1 TTTCTTTTCTTTTCTTTTCTTTTCG
*
18092207 TTTCTTTT-TTTT-TTTTTTTTTCG
1 TTTCTTTTCTTTTCTTTTCTTTTCG
18092230 TTTCTTTTCTTTTCTTTTCTTTTC
1 TTTCTTTTCTTTTCTTTTCTTTTC
18092254 TTCCAAACAG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
23 16 0.41
24 7 0.18
25 16 0.41
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.75
Consensus pattern (25 bp):
TTTCTTTTCTTTTCTTTTCTTTTCG
Found at i:18092229 original size:28 final size:28
Alignment explanation
Indices: 18092197--18092252 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
18092187 TTTCATTTCA
* *
18092197 TTTCGTTTCGTTTCTTTTTTTTTTTTTT
1 TTTCGTTTCGTTTCTTTTCTTTTCTTTT
*
18092225 TTTCGTTTCTTTTCTTTTCTTTTCTTTT
1 TTTCGTTTCGTTTCTTTTCTTTTCTTTT
18092253 CTTCCAAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.80
Consensus pattern (28 bp):
TTTCGTTTCGTTTCTTTTCTTTTCTTTT
Found at i:18092233 original size:5 final size:5
Alignment explanation
Indices: 18092181--18092255 Score: 73
Period size: 5 Copynumber: 15.4 Consensus size: 5
18092171 AATCTGATAT
* * * * * *
18092181 TTTTC ATTTC ATTTC ATTTC GTTTC GTTTC TTTT- TTTT- TTTTT TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
*
18092229 GTTTC TTTTC TTTTC TTTTC TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TT
18092256 CCAAACAGTA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
4 8 0.13
5 55 0.87
ACGTcount: A:0.04, C:0.16, G:0.04, T:0.76
Consensus pattern (5 bp):
TTTTC
Found at i:18094675 original size:15 final size:15
Alignment explanation
Indices: 18094657--18094691 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
18094647 TTGTTTGTGT
18094657 TCGCAAC-ATGAGTGC
1 TCGCAACAAT-AGTGC
18094672 TCGCAACAATAGTGC
1 TCGCAACAATAGTGC
18094687 TCGCA
1 TCGCA
18094692 TCTTCCAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.89
16 2 0.11
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (15 bp):
TCGCAACAATAGTGC
Found at i:18100203 original size:20 final size:20
Alignment explanation
Indices: 18100178--18100224 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
18100168 AACTCACGAG
*
18100178 CCACTCGCAATGAAATCGCT
1 CCACTCGCAATGAAATCACT
18100198 CCACTCGCAATGAAATCACT
1 CCACTCGCAATGAAATCACT
18100218 CCACTCG
1 CCACTCG
18100225 TGTTTGCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.30, C:0.38, G:0.13, T:0.19
Consensus pattern (20 bp):
CCACTCGCAATGAAATCACT
Found at i:18101770 original size:15 final size:15
Alignment explanation
Indices: 18101694--18101773 Score: 76
Period size: 15 Copynumber: 5.3 Consensus size: 15
18101684 ACATTGGAGC
18101694 TGCGAACACT-ATTGT
1 TGCGAACACTGA-TGT
* *
18101709 TGAGAACACT-AGTAT
1 TGCGAACACTGA-TGT
* *
18101724 TGCGAGCACTCATGT
1 TGCGAACACTGATGT
18101739 TGCGAACACTGATGT
1 TGCGAACACTGATGT
18101754 TGCGAACACTTGA-GT
1 TGCGAACAC-TGATGT
18101769 TGCGA
1 TGCGA
18101774 GCATGGATGA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
15 51 0.93
16 4 0.07
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (15 bp):
TGCGAACACTGATGT
Found at i:18103578 original size:217 final size:215
Alignment explanation
Indices: 18102905--18108600 Score: 3964
Period size: 215 Copynumber: 26.6 Consensus size: 215
18102895 AGCTCACATC
*
18102905 AAAAAGCTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAA
1 AAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * *
18102969 A-TATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAA-GACGATCCATTCCTTCGA
65 ACT-TTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA
* * **** * * *
18103032 CCAATTTTT-TGAACACTCCATGCAAAAGAAATTGCATCATTTGGTCTAAAAATTTTATCATTTT
129 -CAATTTTTCT-ATCATTCCATGCTCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
18103096 GTAAACAACTTTTTGTCTTTGAATT
191 GTAAACAACTTTTGGTCTTTGAATT
* * * * *
18103121 AAAAACTTATTTACGTGAGAATTGATTCTCTCTTGCTTCTTGGATGAACTTCCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
** * *
18103186 CTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGG-CGATCCATTTCTTCGACA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGAC-
* * * * * *
18103250 AATTTTTCTAACATTCCATGCCCTGGAAAT-CACTTTATTTGGTC-AGATTGTTTGTCATTTTGT
130 AATTTTTCTATCATTCCATGCTCGGGAAATGCA--TCATTTGGTCTAAATAGTTTGTCATTTTGT
18103313 AAACAACTTTTGGTCTTTGAATT
193 AAACAACTTTTGGTCTTTGAATT
* * * * *
18103336 AAAAACTTATTTACATGAGAATTGTTTTTCT-TTAGGTTCTTGGATGAACTTTCAAAGTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGACGAACTTTCGAACTTGTCAA
* * *
18103400 ACTTTTATGAGTTCTTTTATAATTTTGATTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGAG
65 ACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA-
* * * *
18103465 CAATTTTTCTATCATTGCATGCTCGGGAAACTGCATCATTAGGTCTAAATAGGTTGTCATTTTTT
129 CAATTTTTCTATCATTCCATGCTCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
18103530 AAACAACTTTTGGTCTTTGAATT
193 AAACAACTTTTGGTCTTTGAATT
* * * *
18103553 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAAGTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
18103618 CTTTTATGAGTTCTTTTATAACTTCGGTTCTTTAAAGTATTTGAA-GACGATCCATTCCTTTTCA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGGACGATCCATTCC-TTTGA
* *
18103682 CAATTTTTTTATTATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
129 CAATTTTTCTATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
18103747 AAAGAACTTTTTGTCTTTGAATT
193 AAACAACTTTTGGTCTTTGAATT
* * * * *
18103770 AAAAACTTATTTACGTGAGCATTGTTTCTCTCTT-GCTCATAGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * * * *
18103834 CATTTACGAGTACTTTTATAAATTC-GATCCTTAAAGTTTTCAAGG-CAATCCATTTCTTCGACA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGAC-
* * * ** * * *
18103897 AATTTTT-TGAACATTCCATACCCGGGAAATCGTTTCATTTGTTC-AGATCGTTTGTCATTTTGT
130 AATTTTTCT-ATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGT
18103960 AAACAACTTTTGGTCTTTGAATT
193 AAACAACTTTTGGTCTTTGAATT
* * * * *
18103983 AAAAACTTATTTACATGAGAATTATTTTTCT-TTGGGTTCTTAGACGAAC-TGCTGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGACGAACTTTC-GAACTTGTCA
* * *
18104046 AACTTTTATGAGTTCTTTTATAACTTCGATTACTTAAAGTATTTAAGGACGATCCATTCCTTTGA
64 AACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA
* * * ** * *
18104111 GCAATTTTTCGATCATTGCATTCTCAAGAAATTGCATCATTTGGTCTAAATAGGTTGTTAGTTTT
129 -CAATTTTTCTATCATTCCATGCTCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCA-TTTT
* *
18104176 -TAAACAACTTTTGGTCTTTAAATA
191 GTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
18104200 AAAAACTTATTTACGTGAGAGTTGTTTCCCTCTTGGTTCCTGGACAAAGTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
18104265 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCATTCCTTTTCAC
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCC-TTTGAC
* * *
18104330 AA-TTCTCTGATCATTCCATGCTCGGTAAATCGCATCATTTGGTCT-AA-A-TTTCTC--TTTGA
130 AATTTTTCT-ATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG-
* **
18104389 AATAAA-AACTTAATT--ACGTGAGAATT
192 --TAAACAACTT--TTGGTC-TTTGAATT
**** * * * * *** ** *
18104415 ATTTCTCTTGTTCATG-GACGAA--CTTTCGAACTT-G-TC----A--AACATTTACGAGTTTTT
1 A-AAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTT-CGA-ACTTG
* * * * * ** *** *
18104469 TTATGAATTCGGTTCCTTA-AAG-T-ATTCA-AGACGATCCATTCCTTCGACCAA-T-TTTTTGA
61 TCA--AA--C--TT--TTATGAGTTCTTTTATA-AC-TTCGGTTCCTT--A--AAGTATTCAAGG
* * * * * * *** *** * *
18104528 AC-ATTCCA-T-GTTCGAGAA-ATTGC-ATCATT---TGGTCTAAAAAGTTTGTAATTT--TGTA
112 ACGA-TCCATTCCTTTGACAATTTTTCTATCATTCCATGCTCGGGAAA-TGCATCATTTGGTCTA
* * * ** *
18104583 AACAATTTTTGGTGTTTGAATTAAA-AACTTATT--TAC-GTGAGAGTT
175 AATAGTTTGTCAT-TTTG---TAAACAACTT-TTGGT-CTTTGA-A-TT
** * * * *** * *** * ** * * *
18104628 ----GTTTCTCT-CTTGATTCTTAGATGAACT-TTCGAACTT-GTCAAACATTTTCGAGTTCTT-
1 AAAAACTTATTTACGTGAGAATT-GTTTCTCTCTTGGTTCTTGGACGAAC--TTTCGA--ACTTG
* * * * ** * *** ** * * *
18104685 TTATAACTTCGGTTCATAAAGGTATTCAAGATGATCCATTCCTTCGACAATTTTTC--GAAC-AT
61 TCA-AACTT---TT-AT-GAGTTCTTTTATAACTTCGGTTCCTT--A-AAGTATTCAAGGACGA-
* * * * * *** *** * * *
18104747 TGCA-TGC-TTGAGAA----TCAAATCATT--TTG-TCTAAAAAGTTTGTTATTT--TTTAAACA
116 TCCATTCCTTTGACAATTTTTC-TATCATTCCATGCTCGGGAAA-TGCATCATTTGGTCTAAA-T
* * **
18104801 ACTTTTGGTC--TTTGAATTAAA-AACTTAT--T-TACG-A--
178 A-GTTT-GTCATTTTG---TAAACAACTTTTGGTCTTTGAATT
* * ** * * * * *
18104835 AAGAA-TTGTTT-C--G-CCATTG---GT-TCTTGGACTAACTT--TCGAACCTGTCAAACATT-
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG--T-TCTTGGACGAA-CTTTCGAAC-TTG
** * * * * * *
18104888 T---ACGATT-T--CTT-TTATA--ACTTTGATTCCTGAGAGTATTC-AGGACGATCCATTCCTT
61 TCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTT
** * * * **
18104943 TGACCAA-TTTTCTGAAAATTTCATGCTTGGGAAATCACATCATTTGGTC-AAATTA-TTAATCA
126 TGA-CAATTTTTCT-ATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAA-TAGTTTGTCA
* *
18105005 TTTTGTAAACAACTATTGGTCTATGAATT
187 TTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * *
18105034 CAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTTTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
18105099 CTTTAATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTCGACA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGAC-
* * * * *
18105163 AATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGGTTGTTA-TTT-TA
130 AATTTTTCTATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
18105226 AACAAC-TTTGGCTCTTGGAATA
194 AACAACTTTTGG-TCTTTGAATT
* * * * * * * * *
18105248 AAAAACTTTTTTATGTGTGAATTGTTTGTTTCTTGATTCTAGGATGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * *
18105313 CAATTTACGAGTTCTTTTAGAACTTCGGTTCCTGAGAGTATTCAA-GACGATACATTCCTTCGAC
66 C-TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA-
* * * * ** *
18105377 CAATATTTT-GAACATT-TAGTACTTAGGAAATCACATCATTTGGTC-AAATTA-TTTGTCATTT
129 CAAT-TTTTCTATCATTCCA-TGCTCGGGAAAT-GCATCATTTGGTCTAAA-TAGTTTGTCATTT
* * * *
18105438 TGCAATCAACTATTGGTCTTTGACTT
190 TGTAAACAACTTTTGGTCTTTGAATT
* ** ** *
18105464 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACAGGTCTAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * **
18105529 CTTTTATGATTTCTTTTATAACTTTGGTTCCTTTAAGTATTCTAA-GATGATTCATTATTTTGAG
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGGACGATCCATTCCTTTGA-
* * ** * *
18105593 CAATTTTT-TGAAT-ATTCCATGCTCGAGAAATCACATCGCTAGGTCTAAATAGTTTGTTATTTT
129 CAATTTTTCT--ATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTT
*
18105656 GTAAACAACTTTT--TTTTTGAATT
191 GTAAACAACTTTTGGTCTTTGAATT
*
18105679 AAAAACTTATTT-CGTGAGAATT-TTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * *
18105742 CATGTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAA-GACGATCCATTCCTTCGACC
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA-C
* * * * *
18105806 AATTTTTCAAGCATTCCGTGCTCGAGAAATCGCATCATTTGGTC-AAATTGTTTGTCATTTTGTA
130 AATTTTTCTATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
18105870 AACAACTATTGGTCTATGAATT
194 AACAACTTTTGGTCTTTGAATT
* * *
18105892 AAAAACTTATATATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTGAACTTATCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAA
* *
18105956 ACTTTAATGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAA-GACGATCCATTCCTTTGAC
65 ACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA-
* * ** *
18106020 CAATTTTCCGAAAATTCCATGCTCGGGAAATCGCATCATTTGGTC-AAATTGTTTGTCATTTTGT
129 CAATTTTTCTATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
18106084 AAACAACTGTTGGTCTATGAATT
193 AAACAACTTTTGGTCTTTGAATT
* *
18106107 AAAAACTTATTTATGTGAGGATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAA
* * * *
18106171 AC-ATTACTGAGTTCTTTTATATCTTCGGTTACTTAAAGTATTCAA-GACGATCCATT-CTGTCG
65 ACTTTTA-TGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCT-TTG
*** * * * * ** * *
18106233 ACAAATTTTAAAAACATTCCATGCTCTGGAAATCGAACCATTTGG-AGAAATTGTTTGTTATTTT
128 AC-AATTTTTCTATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTT
*
18106297 GTAAACAACTTTTGGTGTTTGAATT
191 GTAAACAACTTTTGGTCTTTGAATT
* * * *
18106322 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * **
18106387 CTTTTATGAG-TCCTTCATAACTTCGTTTCCTGAGAGTATTCAA-GACGATCCATTCCTTCAACC
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA-C
* * * * * *
18106450 AA-TTTTCTAAACATTCCGTGCTCGAGAAATCGTAACATTTGGTCTAAAAAGTTTGTCATTTTGT
130 AATTTTTCT-ATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
18106514 AAACAACTTTTTGTCTTTGTATT
193 AAACAACTTTTGGTCTTTGAATT
* * * * *
18106537 AAAAACTTATTTACGTGAGAATTGATTCTCTCTTGCTTCTTGGACGACCTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
18106602 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTTAAGTATTCAAAGTCGATCCATTCCTTTGAGA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA-C
* * * * * * * * *
18106667 AATTTTCCAAAT-ATTCCATACTCGAGAGATCGCATCCTTAGGTATAAACAGTTTGTCATTTTGT
130 AATTTTTC-TATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGT
** *
18106731 AAACAACATTTTTATTTTTGAATT
193 AAACAAC-TTTTGGTCTTTGAATT
* * * * * * *
18106755 AAAAACTTATTTACGTGAGATTTGTTTCTCTTTTAGTTCTTGGATGAGCTTTCAAATTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
18106820 CTTTTATGGGTTATTTTATAACTTCGTTTCCTTAAAGTATTCAAGGGATGATCCATTCCTTTGAG
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GGACGATCCATTCCTTTGA-
* * * * * * *
18106885 CAATTTTCCGATCATTGCATGCTAGGGAAATCGCATTATTTGGTCTAAATAGGTTGTCATTTTTT
129 CAATTTTTCTATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
18106950 AAACAAGTTTTGGCCTTTGAATA
193 AAACAACTTTTGGTCTTTGAATT
* * * *
18106973 AAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
18107038 CTTTTATGAGTTCTTTCATAACTTGGGTTCCTTAAAGTATTTAAAGATGATCCATTCCATTT-AG
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCC-TTTGA-
*** * * * *
18107102 CAATTTTAAGATCATTTCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTAGT
129 CAATTTTTCTATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGT
**
18107167 AAACAACTTTTTCTCTTTGAATT
193 AAACAACTTTTGGTCTTTGAATT
** * * * *
18107190 AAAATTTTAATTACGTGAGAATTGTTTCTCTC-TAGTT-TATGGACAAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAACTTTCGAACTTGTCAA
* * * * * **
18107253 ACATTTACT-AATTCTTTTATAACTTTGGTTCCTTAAAGAATTCAA-GACGATCCAATCCTTCAA
65 ACTTTTA-TGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA
* ** * * *
18107316 CCAA-TTTTCAGAAAATTCCATGCTCAGGAAATCGCATCATTTGATCTAAAAAGTTTGTCATTTT
129 -CAATTTTTC-TATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTT
*
18107380 GTAAACAACTTTTGGTGTTTGAATT
191 GTAAACAACTTTTGGTCTTTGAATT
* * * *
18107405 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACAAACTTACG-ACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * *
18107469 CTTTTATGAGTTTTTTTATAACTTCGATTCCTGAGAGTATTCAA-GATGATTCATTCCTTCGACC
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA-C
* * * * * * *
18107533 AA-TTTTCTGAACATTTCGTGCTCGAGAAATCGCATCTTTTGGTCTAAAAAGTTTATCATTTTGT
130 AATTTTTCT-ATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGT
** *
18107597 AAACAA-TTTTTTTCTTTGTATT
193 AAACAACTTTTGGTCTTTGAATT
* * ** * * *
18107619 AAAAACTTATTTACGTGAGAATTGATTCTCTCATGCCTCTTGGATGAACTTAC-ACACTAGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGA-ACTTGTCAA
* * * * * *
18107683 ACTTTTATGAGTTCTTTTACAACTTCGTTTCCTTTAAGAATTCAAAGAGGATCCATTCCTTTGAG
65 ACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA-
** * * * * *
18107748 CAATTTTATGAAT-ATTCCATACTCGAGAGATCGCATCATTAGGTATAAATAGTTTGTCATTTTG
129 CAATTTT-TCTATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTG
* *
18107812 TAAACAACTATTTTGTTTTTGAATT
192 TAAACAACT-TTTGGTCTTTGAATT
* * *
18107837 AAAAACTTATTTACGTGAGATTTG-TT-TCTCTTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
18107900 CTTTTAAGAGTTCTTTTATAAGTTCGTTTCCTGAAAGTATTCAAGGATGATCCATTCCTTTGAGC
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA-C
* * * * *
18107965 AAATTTCCGATCATTGCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
130 AATTTTTCTATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * *
18108030 AGCACCTTTTTAGTCTTTGTATT
194 AACAAC-TTTTGGTCTTTGAATT
* * * * *
18108053 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTACAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * ** *
18108118 ATTGTATGAGTTCTTTTATGACATT-GGTTCCTTTAAGTATTCAAAGATAATCTATTCCTTTGAG
66 CTTTTATGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA-
* ** * * *
18108182 CAA-TTTTCTGAAT-ATTCCATACTCAAGAGATCGCATCATTAGGTATAAATAGTTTGTCATTTT
129 CAATTTTTCT--ATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
18108245 GTAAACAACTTTTTTGTTTTTGAATT
191 GTAAACAAC-TTTTGGTCTTTGAATT
* *
18108271 AAAAAC----TTACGTGAGATTTGTTTCTCTCTTGGTTCTTGGACAAAC-TT-----TTG---AA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
18108323 CTTTTATGAGTACTTTTATATCTTCGTTTCCTTAAAGTATTCAAGGATGATCCATTCCTTTGAGC
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA-C
* * * * *
18108388 AATTTTTCGATCATTGCTTGCTCGGGAAATCGCATCATTTGGTCTAAATAGGTTGTCATTTTTTA
130 AATTTTTCTATCATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
18108453 AACAACTTTTGGTCTTTGAA-T
194 AACAACTTTTGGTCTTTGAATT
* * * * * *
18108474 AAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTACAAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
18108539 CTTTTTATGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCATTCCTTT
66 C-TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTT
18108601 TAGCAATTGA
Statistics
Matches: 4408, Mismatches: 830, Indels: 483
0.77 0.15 0.08
Matches are distributed among these distances:
185 5 0.00
186 7 0.00
187 3 0.00
188 11 0.00
189 2 0.00
190 3 0.00
191 1 0.00
192 10 0.00
193 7 0.00
194 6 0.00
195 14 0.00
196 9 0.00
197 2 0.00
199 5 0.00
200 5 0.00
202 2 0.00
203 14 0.00
204 24 0.01
205 114 0.03
206 21 0.00
207 44 0.01
208 22 0.00
209 21 0.00
210 14 0.00
211 39 0.01
212 70 0.02
213 198 0.04
214 447 0.10
215 1254 0.28
216 789 0.18
217 729 0.17
218 439 0.10
219 77 0.02
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGACA
ATTTTTCTATCATTCCATGCTCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAACTTTTGGTCTTTGAATT
Found at i:18104053 original size:430 final size:429
Alignment explanation
Indices: 18102905--18108599 Score: 5686
Period size: 430 Copynumber: 13.3 Consensus size: 429
18102895 AGCTCACATC
**
18102905 AAAAAGCTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAA
1 AAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAA
* * *
18102969 A-TATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGAC
65 ACT-TTTATGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-
* * **** * * * *
18103033 CAATTTTTTGAACACTCCATGCAAAAGAAATTGCATCATTTGGTCTAAAAATTTTATCATTTTGT
127 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
18103098 AAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGCTTCTTG
192 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * **
18103163 GATGAACTTCCGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
257 GACGAAC-TCTGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* * * * * * * * *
18103228 AAGGCGATCCATTTC-TTCGACAAATTTTTCTAACATTCCATGCCCTGGAAATCACTTTATTTGG
321 AAGACGATCCATTCCTTTC-ACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* *
18103292 TC-AGATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
385 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * *
18103336 AAAAACTTATTTACATGAGAATTGTTTTTCT-TTAGGTTCTTGGATGAACTTTCAAAGTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGATGAACTTTCGAACTTGTCAA
* * *
18103400 ACTTTTATGAGTTCTTTTATAATTTTGATTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGAG
65 ACTTTTATGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAA-GACGATCCATTCCTTCGA-
* * * *
18103465 CAATTTTTCT-ATCATTGCATGCTCGGGAAA-CTGCATCATTAGGTCTAAATAGGTTGTCATTTT
127 CAA-TTTTCTGAACATTCCATGCTCGGGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
18103528 TTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCC
190 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * *
18103593 TGGACGAAGT-TACGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCTTTAAAGTA
255 TGGACGAACTCT--GAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* ** **
18103657 TTTGAAGACGATCCATTCCTTTTCA-CAATTTTTTTATTATTCCATGCTCGGGAAATCGCATCAT
318 -TTCAAGACGATCCATTCC-TTTCACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
* *
18103721 TTGGTCTAAATAGTTTGTCATTTTGTAAAGAACTTTTTGTCTTTGAATT
381 TTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
18103770 AAAAACTTATTTACGTGAGCATTGTTTCTCTCTT-GCTCATAGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* * * * * * * * *
18103834 CATTTACGAGTACTTTTATAAATTCGATCCTTAAAGTTTTCAAGGCAATCCATTTCTTCGACAAA
66 CTTTTATGAGTTCTTTTATAACTTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAC-AA
* * * ** * * *
18103899 TTTTTTGAACATTCCATACCCGGGAAATCGTTTCATTTGTTC-AGATCGTTTGTCATTTTGTAAA
130 TTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
18103963 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTTTCT-TTGGGTTCTTAGA
195 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGA
* * *
18104027 CGAACTGCTGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGATTACTTAAAGTATTTAA
259 CGAACT-CTGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* * * * * ** *
18104092 GGACGATCCATTCCTTTGAGCAATTTTTCGATCATTGCATTCTCAAGAAATTGCATCATTTGGTC
323 -GACGATCCATTCCTTTCACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * * *
18104157 TAAATAGGTTGTTAGTTTT-TAAACAACTTTTGGTCTTTAAATA
387 TAAATAGTTTGTCA-TTTTGTAAACAACTTTTGGTCTTTGAATT
* * * ** * * *
18104200 AAAAACTTATTTACGTGAGAGTTGTTTCCCTCTTGGTTCCTGGACAAAGTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
*
18104265 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCATTCCTTTTC-A
66 CTTTTATGAGTTCTTTTATAACTTC-GTTCCTTAAAGTA-TTCAAGACGATCCATTCC--TTCGA
* * *
18104329 CAATTCTCTGATCATTCCATGCTCGGTAAATCGCATCATTTGGTCT--A-A-------A--TT-T
127 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
18104381 ------C------TCTTTGAAATAAAAACTTAATTACGTGAGAATT-ATT-TCTCTT-GTTCATG
192 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * *
18104431 GACGAACTTTCGAACTTGTCAAACATTTACGAGTTTTTTTATGAA-TTCGGTTCCTTAAAGTATT
257 GACGAACTCT-GAACTTGTCAAACTTTTATGAGTTCTTTTAT-AACTTCGGTTCCTTAAAGTATT
* * * *
18104495 CAAGACGATCCATTCC-TTCGACCAATTTTTTGAACATTCCATGTTCGAGAAATTGCATCATTTG
320 CAAGACGATCCATTCCTTTC-ACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTG
* * * *
18104559 GTCTAAAAAGTTTGTAATTTTGTAAACAATTTTTGGTGTTTGAATT
384 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
18104605 AAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGATTCTTAGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* * *
18104670 CATTTT-CGAGTTCTTTTATAACTTCGGTT-CATAAAGGTATTCAAGATGATCCATTCCTTCGAC
66 C-TTTTATGAGTTCTTTTATAACTTC-GTTCCTTAAA-GTATTCAAGACGATCCATTCCTTCGAC
* * * ** * * * *
18104733 AATTTT-TCGAACATTGCATGCTTGAG-AATCAAATCATTTTGTCTAAAAAGTTTGTTATTTTTT
128 AATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
** *
18104796 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGAAAGAATTGTTTCGC-CATTGGTTCTT
192 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTT
* * * * * * * * * *
18104860 GGACTAACTTTCGAACCTGTCAAACATTTACGATTTCTTTTATAACTTTGATTCCTGAGAGTATT
256 GGACGAACTCT-GAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * * *
18104925 CAGGACGATCCATTCCTTTGACCAA-TTTTCTGAAAATTTCATGCTTGGGAAATCACATCATTTG
320 CAAGACGATCCATTCCTTTCACCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTG
** * *
18104989 GTC-AAATTA-TTAATCATTTTGTAAACAACTATTGGTCTATGAATT
384 GTCTAAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * ** * *
18105034 CAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTTTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
*
18105099 CTTTAATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACAA
66 CTTTTATGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAC-A
** * *
18105164 ATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGGTTGTTA-TTT-TAA
129 ATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * * * * *
18105227 ACAAC-TTTGGCTCTTGGAATAAAAAACTTTTTTATGTGTGAATTGTTTGTTTCTTGATTCTAGG
194 ACAACTTTTGG-TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * * *
18105291 ATGAACTTCCGAACTTGTCAAACAATTTACGAGTTCTTTTAGAACTTCGGTTCCTGAGAGTATTC
258 ACGAAC-TCTGAACTTGTCAAAC-TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* * * ** *
18105356 AAGACGATACATTCC-TTCGACCAATATTTT-GAACATT-TAGTACTTAGGAAATCACATCATTT
321 AAGACGATCCATTCCTTTC-ACCAAT-TTTTCGAACATTCCA-TGCTCGGGAAATCGCATCATTT
* * * *
18105418 GGTC-AAATTA-TTTGTCATTTTGCAATCAACTATTGGTCTTTGACTT
383 GGTCTAAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
** ** *
18105464 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACAGGTCTAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* * * * * ** *
18105529 CTTTTATGATTTCTTTTATAACTTTGGTTCCTTTAAGTATTCTAAGATGATTCATTATTTTGAGC
66 CTTTTATGAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTCGA-C
* * * * ** * *
18105594 AATTTTTTGAATATTCCATGCTCGAGAAATCACATCGCTAGGTCTAAATAGTTTGTTATTTTGTA
128 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
18105659 AACAACTTTT--TTTTTGAATTAAAAACTTATTT-CGTGAGAATT-TTTCTCTCTTGGTTCTTGG
193 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * * * *
18105720 ACGAACTTTCAAACTTGTCAAACATGTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCA
258 ACGAACTCT-GAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
* *
18105785 AGACGATCCATTCC-TTCGACCAATTTTTC-AAGCATTCCGTGCTCGAGAAATCGCATCATTTGG
322 AGACGATCCATTCCTTTC-ACCAATTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGG
* * *
18105848 TC-AAATTGTTTGTCATTTTGTAAACAACTATTGGTCTATGAATT
385 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * *
18105892 AAAAACTTATATATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTGAACTTATCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAA
* * *
18105956 ACTTTAATGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTTGACC
65 ACTTTTATGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-C
* * *
18106021 AATTTTCCGAAAATTCCATGCTCGGGAAATCGCATCATTTGGTC-AAATTGTTTGTCATTTTGTA
128 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * *
18106085 AACAACTGTTGGTCTATGAATTAAAAACTTATTTATGTGAGGATTGTTTCTCTCTTGGTTCTTGG
193 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
18106150 ACGAACTTCTGAACTTGTCAAAC-ATTACTGAGTTCTTTTATATCTTCGGTTACTTAAAGTATTC
258 ACGAAC-TCTGAACTTGTCAAACTTTTA-TGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* * *** * * *
18106214 AAGACGATCCATT-CTGTCGACAAATTTTAAAAACATTCCATGCTCTGGAAATCGAACCATTTGG
321 AAGACGATCCATTCCTTTC-ACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
** * * *
18106278 -AGAAATTGTTTGTTATTTTGTAAACAACTTTTGGTGTTTGAATT
385 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
18106322 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* * * * *
18106387 CTTTTATGAG-TCCTTCATAACTTCGTTTCCTGAGAGTATTCAAGACGATCCATTCCTTCAACCA
66 CTTTTATGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-CA
* * * * * *
18106451 ATTTTCTAAACATTCCGTGCTCGAGAAATCGTAACATTTGGTCTAAAAAGTTTGTCATTTTGTAA
129 ATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * *
18106516 ACAACTTTTTGTCTTTGTATTAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGCTTCTTGGA
194 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * *
18106581 CGACCT-TACGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTTAAGTATTCA
259 CGAACTCT--GAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-
* * ** * * * * * * * *
18106645 AAGTCGATCCATTCCTTTGAGAAATTTTCCAAATATTCCATACTCGAGAGATCGCATCCTTAGGT
321 AAGACGATCCATTCCTTTCACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
* * ** *
18106710 ATAAACAGTTTGTCATTTTGTAAACAACATTTTTATTTTTGAATT
386 CTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATT
* * * * * *
18106755 AAAAACTTATTTACGTGAGATTTGTTTCTCTTTTAGTTCTTGGATGAGCTTTCAAATTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* * * *
18106820 CTTTTATGGGTTATTTTATAACTTCGTTTCCTTAAAGTATTCAAGGGATGATCCATTCCTTTGAG
66 CTTTTATGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAA--GACGATCCATTCCTTCGA-
* * * * * * *
18106885 CAATTTTCCGATCATTGCATGCTAGGGAAATCGCATTATTTGGTCTAAATAGGTTGTCATTTTTT
127 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
18106950 AAACAAGTTTTGGCCTTTGAATAAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTG
192 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * *
18107015 GACGAAGT-TACGAACTAGTCAAACTTTTATGAGTTCTTTCATAACTTGGGTTCCTTAAAGTATT
257 GACGAACTCT--GAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-T
* * * ** * * *
18107079 TAAAGATGATCCATTCCATTT-AGCAATTTTAAGATCATTTCATGCTCAGGAAATCGCATCATTT
319 TCAAGACGATCCATTCC-TTTCACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTT
* * **
18107143 GGTCTAAATAGTTTATCATTTAGTAAACAACTTTTTCTCTTTGAATT
383 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
** * * ** *
18107190 AAAATTTTAATTACGTGAGAATTGTTTCTCTC-TAGTT-TATGGACAAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGATGAACTTTCGAACTTGTCAA
* * * * * *
18107253 ACATTTACT-AATTCTTTTATAACTTTGGTTCCTTAAAGAATTCAAGACGATCCAATCCTTCAAC
65 ACTTTTA-TGAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-
* * * * *
18107317 CAATTTTCAGAAAATTCCATGCTCAGGAAATCGCATCATTTGATCTAAAAAGTTTGTCATTTTGT
127 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
18107382 AAACAACTTTTGGTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTG
192 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * *
18107447 GACAAACT-T-ACGACTAGTCAAACTTTTATGAGTTTTTTTATAACTTCGATTCCTGAGAGTATT
257 GACGAACTCTGA--ACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * * *
18107510 CAAGATGATTCATTCC-TTCGACCAA-TTTTCTGAACATTTCGTGCTCGAGAAATCGCATCTTTT
320 CAAGACGATCCATTCCTTTC-ACCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTT
* * ** *
18107573 GGTCTAAAAAGTTTATCATTTTGTAAACAA-TTTTTTTCTTTGTATT
383 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * ** * *
18107619 AAAAACTTATTTACGTGAGAATTGATTCTCTCATGCCTCTTGGATGAACTTAC-ACACTAGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGA-ACTTGTCAA
* * * * *
18107683 ACTTTTATGAGTTCTTTTACAACTTCGTTTCCTTTAAGAATTCAAAGAGGATCCATTCCTTTGAG
65 ACTTTTATGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTC-AAGACGATCCATTCCTTCGA-
* * * * * * *
18107748 CAATTTTATGAATATTCCATACTCGAGAGATCGCATCATTAGGTATAAATAGTTTGTCATTTTGT
127 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
18107813 AAACAACTATTTTGTTTTTGAATTAAAAACTTATTTACGTGAGATTTG-TT-TCTCTTGGTTCTT
192 AAACAACT-TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * * * *
18107876 GGATGAACTTTCAAACTTGTCAAACTTTTAAGAGTTCTTTTATAAGTTCGTTTCCTGAAAGTATT
256 GGACGAACTCT-GAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * * * *
18107941 CAAGGATGATCCATTCCTTTGAGCAAATTTCCGATCATTGCATGCTCGGGAAATCGCATCATTTG
320 CAA-GACGATCCATTCCTTTCACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTG
* * * * *
18108006 GTCTAAAAAGTTTGTCATTTTGTAAGCACCTTTTTAGTCTTTGTATT
384 GTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATT
* * * *
18108053 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTACAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* * * * * ** * *
18108118 ATTGTATGAGTTCTTTTATGACATTGGTTCCTTTAAGTATTCAAAGATAATCTATTCCTTTGAGC
66 CTTTTATGAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTCGA-C
* * ** * * *
18108183 AATTTTCTGAATATTCCATACTCAAGAGATCGCATCATTAGGTATAAATAGTTTGTCATTTTGTA
128 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
18108248 AACAACTTTTTTGTTTTTGAATTAAAAAC----TTACGTGAGATTTGTTTCTCTCTTGGTTCTTG
193 AACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * *
18108309 GACAAACT-T----TTG---AACTTTTATGAGTACTTTTATATCTTCGTTTCCTTAAAGTATTCA
257 GACGAACTCTGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
* * * * * *
18108366 AGGATGATCCATTCCTTTGAGCAATTTTTCGATCATTGCTTGCTCGGGAAATCGCATCATTTGGT
322 A-GACGATCCATTCCTTTCACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
* *
18108431 CTAAATAGGTTGTCATTTTTTAAACAACTTTTGGTCTTTGAA-T
386 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * *
18108474 AAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTACAAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* *
18108539 CTTTTTATGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCATTCCTT
66 C-TTTTATGAGTTCTTTTATAACTTC-GTTCCTTAAAGTA-TTCAAGACGATCCATTCCTT
18108600 TTAGCAATTG
Statistics
Matches: 4421, Mismatches: 691, Indels: 313
0.81 0.13 0.06
Matches are distributed among these distances:
402 19 0.00
403 20 0.00
404 28 0.01
405 168 0.04
406 64 0.01
407 5 0.00
408 4 0.00
409 30 0.01
412 1 0.00
414 2 0.00
415 2 0.00
421 68 0.02
422 58 0.01
423 127 0.03
424 1 0.00
426 30 0.01
427 92 0.02
428 246 0.06
429 398 0.09
430 1128 0.26
431 502 0.11
432 499 0.11
433 245 0.06
434 370 0.08
435 58 0.01
436 251 0.06
437 5 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (429 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
CTTTTATGAGTTCTTTTATAACTTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACAAT
TTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACTCTGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
GATCCATTCCTTTCACCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
Found at i:18104537 original size:188 final size:190
Alignment explanation
Indices: 18104190--18104565 Score: 487
Period size: 188 Copynumber: 2.0 Consensus size: 190
18104180 CAACTTTTGG
* * * * *
18104190 TCTTTAAATAAAAAACTTATTTACGTGAGAGTTGTTTCCCTCTTGGTTCCTGGACAAAGTTACGA
1 TCTTTAAATAAAAAACTTAATTACGTGAGAATTATTT-CCTCTTGGTTCATGGACAAACTTACGA
* *
18104255 ACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCAT
65 ACTAGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCAT
*
18104320 TCCTTTTCACAATTCTCTGATCATTCCATGCTCG-GTAAATCGCATCATTTGGTCTAAATTTC
130 TCC-TTTCACAATTCTCTGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATTTC
* *
18104382 TCTTTGAAAT-AAAAACTTAATTACGTGAGAATTATTT-CTCTT-GTTCATGGACGAACTTTCGA
1 TCTTT-AAATAAAAAACTTAATTACGTGAGAATTATTTCCTCTTGGTTCATGGACAAACTTACGA
* * *
18104444 ACTTGTCAAACATTTACGAGTTTTTTTATGAA-TTCGGTTCCTTAAAGTA-TTCAAGACGATCCA
65 ACTAGTCAAACATTTACGAGTTCTTTTAT-AACTTCGGTTCCTTAAAGTATTTAAAGACGATCCA
* * * *
18104507 TTCC-TTCGACCAATTTTTTGAACATTCCATGTTCGAGAAATTGCATCATTTGGTCTAAA
129 TTCCTTTC-A-CAATTCTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAA
18104566 AAGTTTGTAA
Statistics
Matches: 162, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
186 3 0.02
187 1 0.01
188 59 0.36
189 59 0.36
190 7 0.04
192 29 0.18
193 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (190 bp):
TCTTTAAATAAAAAACTTAATTACGTGAGAATTATTTCCTCTTGGTTCATGGACAAACTTACGAA
CTAGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCATT
CCTTTCACAATTCTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATTTC
Found at i:18105072 original size:215 final size:216
Alignment explanation
Indices: 18104382--18108600 Score: 4358
Period size: 215 Copynumber: 19.6 Consensus size: 216
18104372 TCTAAATTTC
* * * * *
18104382 TCTTTGAAATAAAAACTTAATTACGTGAGAATT-ATT-TCTCTT-GTTCATGGACGAACTTTCGA
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTCGA
* * *
18104444 ACTTGTCAAACATTTACGAGTTTTTTTATGAA-TTCGGTTCCTTAAAGTATTCAAGACGATCCAT
66 ACTTGTCAAACTTTTATGAGTTCTTTTAT-AACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * *
18104508 TCCTTCGACCAATTTTTTGAACATTCCATGTTCGAGAAATTGCATCATTTGGTCTAAAAAGTTTG
130 TCCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
18104573 TAATTTTGTAAACAATTTTTGG
195 TCATTTTGTAAACAACTTTTGG
* * * *
18104595 TGTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGATTCTTAGA-TGAACTTTCG
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACTTTCG
* * *
18104659 AACTTGTCAAACATTTT-CGAGTTCTTTTATAACTTCGGTT-CATAAAGGTATTCAAGATGATCC
65 AACTTGTCAAAC-TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAA-GTATTCAAGACGATCC
* * * * ** * *
18104722 ATTCCTTCGA-CAATTTT-TCGAACATTGCATGCTTGAG-AATCAAATCATTTTGTCTAAAAAGT
128 ATTCCTTTGACCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* *
18104784 TTGTTATTTTTTAAACAACTTTTGG
192 TTGTCATTTTGTAAACAACTTTTGG
** *
18104809 TCTTTGAATTAAAAACTTATTTACGAAAGAATTGTTTCGC-CATTGGTTCTTGGACTAACTTTCG
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACTAACTTTCG
* * * * * * * * *
18104873 AACCTGTCAAACATTTACGATTTCTTTTATAACTTTGATTCCTGAGAGTATTCAGGACGATCCAT
65 AACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * *
18104938 TCCTTTGACCAATTTTCTGAAAATTTCATGCTTGGGAAATCACATCATTTGGTC-AAATTA-TTA
130 TCCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTT
* *
18105001 ATCATTTTGTAAACAACTATTGG
194 GTCATTTTGTAAACAACTTTTGG
* * * * *
18105024 TCTATGAATTCAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGA
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTCGA
* *
18105089 ACTTTTCAAACTTTAATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
66 ACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * ** *
18105154 CCTTCGACAAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGGTTGT
131 CCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
*
18105219 TA-TTT-TAAACAAC-TTTGG
196 CATTTTGTAAACAACTTTTGG
* * * * * * * * * *
18105237 CTCTTGGAATAAAAAACTTTTTTATGTGTGAATTGTTTGTTTCTTGATTCTAGGA-TGAACTTCC
1 -TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACTTTC
* * * * * *
18105301 GAACTTGTCAAACAATTTACGAGTTCTTTTAGAACTTCGGTTCCTGAGAGTATTCAAGACGATAC
64 GAACTTGTCAAAC-TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * ** *
18105366 ATTCCTTCGACCAATATTT-TGAACATT-TAGTACTTAGGAAATCACATCATTTGGTC-AAATTA
128 ATTCCTTTGACCAAT-TTTCTGAACATTCCA-TGCTCGGGAAATCGCATCATTTGGTCTAAA-TA
* * *
18105428 -TTTGTCATTTTGCAATCAACTATTGG
190 GTTTGTCATTTTGTAAACAACTTTTGG
* **
18105454 TCTTTGACTTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACTTAAG
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACTTTCG
** * * * * * *
18105518 AACAGGTCTAACTTTTATGATTTCTTTTATAACTTTGGTTCCTTTAAGTATTCTAAGATGATTCA
65 AACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGACGATCCA
** * * * * * ** *
18105583 TTATTTTGAGCAATTTTTTGAATATTCCATGCTCGAGAAATCACATCGCTAGGTCTAAATAGTTT
129 TTCCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
*
18105648 GTTATTTTGTAAACAACTTTT--
194 GTCATTTTGTAAACAACTTTTGG
* * *
18105669 TTTTTGAATTAAAAACTTATTT-CGTGAGAATT-TTTCTCTCTTGGTTCTTGGACGAACTTTCAA
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTCGA
* * * * * *
18105732 ACTTGTCAAACATGTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATT
66 ACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * * *
18105797 CCTTCGACCAATTTT-TCAAGCATTCCGTGCTCGAGAAATCGCATCATTTGGTC-AAATTGTTTG
131 CCTTTGACCAATTTTCTGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
*
18105860 TCATTTTGTAAACAACTATTGG
195 TCATTTTGTAAACAACTTTTGG
* * * *
18105882 TCTATGAATTAAAAACTTATATATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTG
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTC-G
* * *
18105946 AACTTATCAAACTTTAATGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCAT
65 AACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * *
18106011 TCCTTTGACCAATTTTCCGAAAATTCCATGCTCGGGAAATCGCATCATTTGGTC-AAATTGTTTG
130 TCCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
*
18106075 TCATTTTGTAAACAACTGTTGG
195 TCATTTTGTAAACAACTTTTGG
* * * *
18106097 TCTATGAATTAAAAACTTATTTATGTGAGGATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTG
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTC-G
* * *
18106161 AACTTGTCAAAC-ATTACTGAGTTCTTTTATATCTTCGGTTACTTAAAGTATTCAAGACGATCCA
65 AACTTGTCAAACTTTTA-TGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * *** * * * ** *
18106225 TT-CTGTCGACAAATTTTAAAAACATTCCATGCTCTGGAAATCGAACCATTTGG-AGAAATTGTT
129 TTCCT-TTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
*
18106288 TGTTATTTTGTAAACAACTTTTGG
193 TGTCATTTTGTAAACAACTTTTGG
* * *
18106312 TGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA-TGAACTTACG
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACTTTCG
* * * * * *
18106376 AACTAGTCAAACTTTTATGAG-TCCTTCATAACTTCGTTTCCTGAGAGTATTCAAGACGATCCAT
65 AACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
** * * * * * *
18106440 TCCTTCAACCAATTTTCTAAACATTCCGTGCTCGAGAAATCGTAACATTTGGTCTAAAAAGTTTG
130 TCCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
*
18106505 TCATTTTGTAAACAACTTTTTG
195 TCATTTTGTAAACAACTTTTGG
* * * * * *
18106527 TCTTTGTATTAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGCTTCTTGGACGACCTTACGA
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTCGA
* * *
18106592 ACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTTAAGTATTCAAAGTCGATCCAT
66 ACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGACGATCCAT
** ** * * * * * * * *
18106657 TCCTTTGAGAAATTTTCCAAATATTCCATACTCGAGAGATCGCATCCTTAGGTATAAACAGTTTG
130 TCCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
**
18106722 TCATTTTGTAAACAACATTTTTA
195 TCATTTTGTAAACAAC-TTTTGG
* * * * * *
18106745 TTTTTGAATTAAAAACTTATTTACGTGAGATTTGTTTCTCTTTTAGTTCTTGGA-TGAGCTTTCA
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACTTTCG
* * * * *
18106809 AATTTGTCAAACTTTTATGGGTTATTTTATAACTTCGTTTCCTTAAAGTATTCAAGGGATGATCC
65 AACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA--GACGATCC
* * * * * * *
18106874 ATTCCTTTGAGCAATTTTCCGATCATTGCATGCTAGGGAAATCGCATTATTTGGTCTAAATAGGT
128 ATTCCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* *
18106939 TGTCATTTTTTAAACAAGTTTTGG
193 TGTCATTTTGTAAACAACTTTTGG
* * * * * *
18106963 CCTTTGAATAAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTACGA
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTCGA
* * * * *
18107028 ACTAGTCAAACTTTTATGAGTTCTTTCATAACTTGGGTTCCTTAAAGTATTTAAAGATGATCCAT
66 ACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCAT
* ** * * *
18107093 TCCATTT-AGCAATTTTAAGATCATTTCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
130 TCC-TTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * **
18107157 ATCATTTAGTAAACAACTTTTTC
194 GTCATTTTGTAAACAACTTTTGG
** * * * *
18107180 TCTTTGAATTAAAATTTTAATTACGTGAGAATTGTTTCTCTC-TAGTT-TATGGACAAACTTTCA
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACTAACTTTCG
* * * *
18107243 AACTTGTCAAACATTTACT-AATTCTTTTATAACTTTGGTTCCTTAAAGAATTCAAGACGATCCA
65 AACTTGTCAAACTTTTA-TGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* ** * * * * *
18107307 ATCCTTCAACCAATTTTCAGAAAATTCCATGCTCAGGAAATCGCATCATTTGATCTAAAAAGTTT
129 TTCCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
18107372 GTCATTTTGTAAACAACTTTTGG
194 GTCATTTTGTAAACAACTTTTGG
* * * *
18107395 TGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACAAACTTACG-
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTCGA
* * * * * * *
18107459 ACTAGTCAAACTTTTATGAGTTTTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATTCATT
66 ACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * * * * *
18107524 CCTTCGACCAATTTTCTGAACATTTCGTGCTCGAGAAATCGCATCTTTTGGTCTAAAAAGTTTAT
131 CCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
**
18107589 CATTTTGTAAACAA-TTTTTT
196 CATTTTGTAAACAACTTTTGG
* * * ** *
18107609 TCTTTGTATTAAAAACTTATTTACGTGAGAATTGATTCTCTCATGCCTCTTGGA-TGAACTTAC-
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACTTTCG
* * * * * *
18107672 ACACTAGTCAAACTTTTATGAGTTCTTTTACAACTTCGTTTCCTTTAAGAATTCAAAGAGGATCC
65 A-ACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGACGATCC
* * * * * * * *
18107737 ATTCCTTTGAGCAATTTTATGAATATTCCATACTCGAGAGATCGCATCATTAGGTATAAATAGTT
128 ATTCCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
*
18107802 TGTCATTTTGTAAACAACTATTTTG
193 TGTCATTTTGTAAACAACT-TTTGG
* * *
18107827 TTTTTGAATTAAAAACTTATTTACGTGAGATTTG-TT-TCTCTTGGTTCTTGGA-TGAACTTTCA
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACTTTCG
* * * * *
18107889 AACTTGTCAAACTTTTAAGAGTTCTTTTATAAGTTCGTTTCCTGAAAGTATTCAAGGATGATCCA
65 AACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCA
* * * * * *
18107954 TTCCTTTGAGCAAATTTCCGATCATTGCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTT
129 TTCCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
18108019 GTCATTTTGTAAGCACCTTTTTAG
194 GTCATTTTGTAAACAAC-TTTTGG
* * * * *
18108043 TCTTTGTATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAAGTTACA
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACTTTCG
* * * * ** *
18108107 AACTTGTCAAAATTGTATGAGTTCTTTTATGACATT-GGTTCCTTTAAGTATTCAAAGATAATCT
65 AACTTGTCAAACTTTTATGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTC-AAGACGATCC
* * * ** * * *
18108171 ATTCCTTTGAGCAATTTTCTGAATATTCCATACTCAAGAGATCGCATCATTAGGTATAAATAGTT
128 ATTCCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
*
18108236 TGTCATTTTGTAAACAACTTTTTTG
193 TGTCATTTTGTAAACAAC-TTTTGG
* * *
18108261 TTTTTGAATTAAAAAC----TTACGTGAGATTTGTTTCTCTCTTGGTTCTTGGACAAAC-TT---
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTCGA
* * * *
18108318 --TTG---AACTTTTATGAGTACTTTTATATCTTCGTTTCCTTAAAGTATTCAAGGATGATCCAT
66 ACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCAT
* * * * *
18108378 TCCTTTGAGCAATTTT-TCGATCATTGCTTGCTCGGGAAATCGCATCATTTGGTCTAAATAGGTT
130 TCCTTTGACCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
*
18108442 GTCATTTTTTAAACAACTTTTGG
194 GTCATTTTGTAAACAACTTTTGG
* * * *
18108465 TCTTTGAA-TAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAAGTTACA
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACTTTCG
* * *
18108528 AACTAGTCAAACTTTTTATGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCC
65 AACTTGTCAAAC-TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGACGATCC
18108593 ATTCCTTT
128 ATTCCTTT
18108601 TAGCAATTGA
Statistics
Matches: 3348, Mismatches: 560, Indels: 192
0.82 0.14 0.05
Matches are distributed among these distances:
203 7 0.00
204 17 0.01
205 109 0.03
207 34 0.01
208 4 0.00
211 30 0.01
212 49 0.01
213 127 0.04
214 431 0.13
215 1201 0.36
216 570 0.17
217 284 0.08
218 405 0.12
219 80 0.02
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (216 bp):
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTCGA
ACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
CCTTTGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
CATTTTGTAAACAACTTTTGG
Found at i:18109192 original size:80 final size:79
Alignment explanation
Indices: 18109060--18109223 Score: 258
Period size: 80 Copynumber: 2.1 Consensus size: 79
18109050 TACAAGCACT
* * * *
18109060 AATTTCATTTTAACTCTTTTAGGGAAGCTAATGAGTCGTGTCTCTTCATTAGGATCTGATGTAGT
1 AATTTCATTTTAACTCTTGTAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGC
*
18109125 TGAAAGGGCATGAC
66 TGAAAAGGCATGAC
*
18109139 AATTTCATTTTTAACTCTTGTAGGGAAGCCAGTGAGTCATGTCTCTTCATTAGGATCTGATGTAG
1 AATTTCA-TTTTAACTCTTGTAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAG
18109204 CTGAAAAGGCATGAC
65 CTGAAAAGGCATGAC
18109219 -ATTTC
1 AATTTC
18109224 TCCTTAATTA
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
79 12 0.15
80 66 0.85
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (79 bp):
AATTTCATTTTAACTCTTGTAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGC
TGAAAAGGCATGAC
Found at i:18109777 original size:48 final size:48
Alignment explanation
Indices: 18109656--18109778 Score: 210
Period size: 48 Copynumber: 2.6 Consensus size: 48
18109646 TTAATGCAAG
* *
18109656 GCATTTAACAAACAAAACATTTAATAATGCAGATTACTAAACAAAGAT
1 GCATTTAACAAACAAAACAATTAATGATGCAGATTACTAAACAAAGAT
*
18109704 GCATTTAACAAACAAAACAATTAATGATGCAGATTATTAAACAAAGAT
1 GCATTTAACAAACAAAACAATTAATGATGCAGATTACTAAACAAAGAT
*
18109752 GCATTTAACAAACAAAACACTTAATGA
1 GCATTTAACAAACAAAACAATTAATGA
18109779 AGCGTAATTA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.52, C:0.15, G:0.09, T:0.24
Consensus pattern (48 bp):
GCATTTAACAAACAAAACAATTAATGATGCAGATTACTAAACAAAGAT
Found at i:18109935 original size:22 final size:22
Alignment explanation
Indices: 18109908--18109949 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
18109898 TTAAAGATGC
* *
18109908 AAACATTTATTAAACTAAAATA
1 AAACATATATAAAACTAAAATA
*
18109930 AAACATATATAAAATTAAAA
1 AAACATATATAAAACTAAAA
18109950 AAGTCCTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (22 bp):
AAACATATATAAAACTAAAATA
Found at i:18110129 original size:15 final size:16
Alignment explanation
Indices: 18110071--18110129 Score: 63
Period size: 15 Copynumber: 3.9 Consensus size: 16
18110061 GCTTGGAAGA
18110071 TGCGAGCACTGG-TGT
1 TGCGAGCACTGGATGT
* *
18110086 TGCAAGCACT-CATGT
1 TGCGAGCACTGGATGT
*
18110101 TGCGAACACT-GATGT
1 TGCGAGCACTGGATGT
18110116 TGCGAGCA-TGGATG
1 TGCGAGCACTGGATG
18110130 AAAGGCGAGC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.97
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.25
Consensus pattern (16 bp):
TGCGAGCACTGGATGT
Found at i:18115675 original size:23 final size:24
Alignment explanation
Indices: 18115631--18115684 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 24
18115621 GAGAGTTCTC
*
18115631 AAGAGGAAAAAGAAAACAAAAA-A
1 AAGAAGAAAAAGAAAACAAAAATA
* ** *
18115654 AAGAAGAAAATGAAAATGAAAATC
1 AAGAAGAAAAAGAAAACAAAAATA
18115678 AAGAAGA
1 AAGAAGA
18115685 TACCCATACA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 18 0.72
24 7 0.28
ACGTcount: A:0.72, C:0.04, G:0.19, T:0.06
Consensus pattern (24 bp):
AAGAAGAAAAAGAAAACAAAAATA
Found at i:18124986 original size:15 final size:15
Alignment explanation
Indices: 18124968--18125002 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
18124958 TTGTTTGTGT
18124968 TCGCAAC-ATGAGTGC
1 TCGCAACAAT-AGTGC
18124983 TCGCAACAATAGTGC
1 TCGCAACAATAGTGC
18124998 TCGCA
1 TCGCA
18125003 TCTTCCAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.89
16 2 0.11
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (15 bp):
TCGCAACAATAGTGC
Found at i:18130519 original size:20 final size:20
Alignment explanation
Indices: 18130494--18130540 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
18130484 AACTCACGAG
*
18130494 CCACTCGCAATGAAATCGCT
1 CCACTCGCAATGAAATCACT
*
18130514 CCACTCACAATGAAATCACT
1 CCACTCGCAATGAAATCACT
18130534 CCACTCG
1 CCACTCG
18130541 TGTTTGCACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.38, G:0.11, T:0.19
Consensus pattern (20 bp):
CCACTCGCAATGAAATCACT
Found at i:18132011 original size:45 final size:45
Alignment explanation
Indices: 18131962--18132047 Score: 104
Period size: 45 Copynumber: 1.9 Consensus size: 45
18131952 AGCATGGACC
* *
18131962 TTGCAAGC-TTGGAAGATGCGAGCACTAGTGTT-ACGAACACTCATG
1 TTGCAAACATTGG-AGATGCGAACACTAGTGTTGA-GAACACTCATG
* *
18132007 TTGCAAACATTGGAGCTGCGAACACTATTGTTGAGAACACT
1 TTGCAAACATTGGAGATGCGAACACTAGTGTTGAGAACACT
18132048 AGTATTGCGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
45 30 0.86
46 5 0.14
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (45 bp):
TTGCAAACATTGGAGATGCGAACACTAGTGTTGAGAACACTCATG
Found at i:18132031 original size:30 final size:30
Alignment explanation
Indices: 18131995--18132090 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
18131985 ACTAGTGTTA
18131995 CGAACACTCATGTTGCAAACATTGGAGCTG
1 CGAACACTCATGTTGCAAACATTGGAGCTG
* * *
18132025 CGAACACT-ATTGTTG-AGAACACTAGTA-TTG
1 CGAACACTCA-TGTTGCA-AACA-TTGGAGCTG
* *
18132055 CGAGCACTCATGTTGCAAACACTGGAGCTG
1 CGAACACTCATGTTGCAAACATTGGAGCTG
18132085 CGAACA
1 CGAACA
18132091 TTGATATTGC
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
29 4 0.08
30 42 0.82
31 5 0.10
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (30 bp):
CGAACACTCATGTTGCAAACATTGGAGCTG
Found at i:18132105 original size:60 final size:60
Alignment explanation
Indices: 18131978--18132120 Score: 173
Period size: 60 Copynumber: 2.4 Consensus size: 60
18131968 GCTTGGAAGA
* * * * * *
18131978 TGCGAGCACTAGTGTTACGAACACTCATGTTGCAAACATTGGAGCTGCGAACACTATTGT
1 TGCGAACACTAGTATTGCGAGCACTCATGTTGCAAACACTGGAGCTGCGAACACTATTAT
* *
18132038 TGAGAACACTAGTATTGCGAGCACTCATGTTGCAAACACTGGAGCTGCGAACATTGA-TAT
1 TGCGAACACTAGTATTGCGAGCACTCATGTTGCAAACACTGGAGCTGCGAACACT-ATTAT
*
18132098 TGCGAACACTCG-AGTTGCGAGCA
1 TGCGAACACTAGTA-TTGCGAGCA
18132121 TGGATGAAGA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
59 1 0.01
60 69 0.97
61 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (60 bp):
TGCGAACACTAGTATTGCGAGCACTCATGTTGCAAACACTGGAGCTGCGAACACTATTAT
Found at i:18133684 original size:215 final size:216
Alignment explanation
Indices: 18133251--18138947 Score: 4428
Period size: 215 Copynumber: 26.6 Consensus size: 216
18133241 GCTCACATCA
** *
18133251 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * * * * *
18133315 -TATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACC
66 CT-TTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACA
* * **** * * *
18133379 AATTTTTTGAACACTCCATGCAAAAGAAATTGCATCATTTGGTCTAAAAATTTTGTCATTTTGTA
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
18133444 AACAACTTTTTGTCTTTGAATT
195 AACAACTTTTGGTCTTTGAATT
* * * *
18133466 AAAAACTTATTTACGTGAGAATTGATTCTCTCTTGCTTCTTGGATGAACTTCCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
** * * *
18133531 CTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCGACCCATTTCTTTGACAA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACAA
* * * * * * * *
18133596 ATTTTTCAAACATTCCATGCCCTGGAAATCACTTTATTTGGTC-AGATTGTTTGTCATTTTGTAA
131 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
18133660 ACAACTTTTGGTCTTTGAATT
196 ACAACTTTTGGTCTTTGAATT
* * * *
18133681 AAAAACTTATTTACATGAGAATTGTTT-TC-CTTTAGGTTCTTGGATGAACTTTCAAAGTTGTCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TT-GGTTCTTGGATGAACTTACGAACTTGTCA
* * *
18133744 AACTTTTATGAGTTCTTTTATAATTTTGATTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGA
64 AACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTTGA
* * * * *
18133809 GC-AATTTTTCTATCATTGCATGCTCGGGAAA-CTGCATCATTAGGTCTAAATAGGTTGTCATTT
128 -CAAATTTTTCGAACATTCCATGCTCGGGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTT
*
18133872 TTTAAACAACTTTTGGTCTTTGAATT
191 TGTAAACAACTTTTGGTCTTTGAATT
* * * *
18133898 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAAGTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * *
18133963 CTTTTATGAGTTCTTTTATAACTTCGGTTCTTTAAAGTATTTGAAGACGATCCATTCCTTT-TCA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTTGACA
* ** * *
18134027 CAATTTTTTGATTATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
130 -AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
18134092 AAAGAACTTTTTGTCTTTGAATT
194 AAACAACTTTTGGTCTTTGAATT
* * * * **
18134115 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTT-ATAGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * * * * * * * *
18134179 CATTTACGAGTTCTTTTATAAATTCGGATCCTTAAAGTTTTCAAGGCAATCCATTTCTTCGACAA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACAA
* * * * * * *
18134244 ATTTTTCGAACATTCCATACCCGGGAAATTGCTTCATTTGTTC-AGATCGTTTGTCATTTTGTAA
131 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
18134308 ACAACTTTTGGTCTTTGAATT
196 ACAACTTTTGGTCTTTGAATT
* * * * *
18134329 AAAAACTTATTTACATGAGAATTGTTTTTCT-TTGGGTTCTTAGACGAAC-TGCTGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGATGAACTTAC-GAACTTGTCA
* * *
18134392 AACTTTTATGAGTTCTTTTATAACTTCGATTACTTAAAGTATTTAAGGACGATCCATTCCTTTGA
64 AACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTTGA
* * * ** * *
18134457 GAAATTTTTCGATCATTGCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGGTTGTTAGTTTT
128 CAAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTT
* *
18134522 -TAAACAACTTTTGGTCTTTAAATA
192 GTAAACAACTTTTGGTCTTTGAATT
* * ** * *
18134546 AAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCCTGGACAAAGTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* *
18134611 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCATTCCTTT-TCA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTTGACA
* * * * *
18134675 CAA-TTCTCTGATCATTCCATGCTCGGTAGATCGCATCATTTGGTCT-AA-A-TTTCTC--TTTG
130 -AATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* **
18134734 AAATAAA-AACTTAATT--ACGTGAGAATT
193 ---TAAACAACTT--TTGGTC-TTTGAATT
**** * * * * * **
18134761 ATTTCTCTTGTTCATG-GACGAACTTTCGAACTTGTCAAACAT-TTACGAGTTTTTTTATGAA-T
1 A-AAAACTTATTTACGTGA-GAA--TT-G---TT-TC--TC-TCTT--G-GTTCTTGGATGAACT
* * * * * * * * ** * * * **
18134823 T-CG--GTTCCTTAAAGTATTAAAGACGATC---CATTCCTTC-G-ACC---AATTTTTTGA-AC
51 TACGAACTT-GTCAAACT-TTTATGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* * * * * * *** * * *
18134876 -ATTCCA-TGC-TCGAGAAA--TTGC-ATCATT---TGGTCTAAAAAGTTTG--TAATTT--TGT
113 GA-TCCATTCCTTTGACAAATTTTTCGAACATTCCATGCTCGGGAAA--TCGCATCATTTGGTCT
* * ** **
18134928 AAATAATTTTTGGTGTTTGAATTAAA-AACTTATT--TACGTGAGAATT
175 AAATAGTTTGTCAT-TTTG---TAAACAACTT-TTGGT-C-TTTGAATT
**** * * * * * **
18134974 -GTTTCTCTCTTGATTCTTAGATGAACTTTCGAACTTGTCAAACATTTTCGAGTTCTTTTAT-AA
1 AAAAACT-TATT--TACGT-GA-GAA--TT-G---TT-TC--TC-TCTT-G-GTTCTTGGATGAA
* * * * * * * ** * * *
18135037 CTT-CG--GTTCAT-AAAGGTATTCAAGATGATC---CATTCCTTC-G-ACC---AA-TTTTC-C
49 CTTACGAACTT-GTCAAA-CT-TTTATGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* * * * * *** * *
18135088 GAAC-ATTGCA-TGC-TTGAGAAA----TCAAATCATT---TGGTCTAAAAAGTTTG--TTATTT
110 G-ACGA-TCCATTCCTTTGACAAATTTTTCGAA-CATTCCATGCTCGGGAAA--TCGCATCATTT
* * * * **
18135141 --TTTAAACAACTTTTGGTC--TTTGAATTAAA-AACTTAT--T-TACG-A--
170 GGTCTAAA-TA-GTTT-GTCATTTTG---TAAACAACTTTTGGTCTTTGAATT
* * ** * * *
18135183 AAGAA-TTGTTT-C--G-CCATTG---GT-TCTTGGACTAACTT---TCGAACCTGT-CAAACAT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG--T-TCTTGGAT-GAA-CT-TACGAAC-T
* * * * *
18135235 T-T---AC---GAT---TTCTTTTATAACTTCGATTCCTGAGAGTATTCAGGACGATCCATTCCT
59 TGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * * *
18135290 TTGACCAA-TTTTCTGAAAATTTCATGCTTGGGAAATCACATCATTTGGTC-AAATTA-TTAGTC
124 TTGACAAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTC
* *
18135352 ATTTTGTAAACAACTATTGGTCTATGAATT
187 ATTTTGTAAACAACTTTTGGTCTTTGAATT
* * ** * *
18135382 CAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTTTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* *
18135447 CTTTAATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACAA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACAA
* * * *
18135512 ATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGGTTGTTA-TTT-TAA
131 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
18135575 ACAAC-TTTGGCTCTTGGAATA
196 ACAACTTTTGG-TCTTTGAATT
* * * * * * *
18135596 AAAAACTTTTTTATGTGAAAATTGTTTGTTTCTTGGTTCTAGGATGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * * * * * * *
18135661 CAATTTACGAGTTCTTTTAGAACTTCGGTTCCTGAGAGTATTCAAGACGATACATTCCTTCGACC
66 C-TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACA
* * ***
18135726 AATATTTT-GAACATT-TAGTACTTACGAAATCGCATCATTTGGTC-AAATTA-TTTGTCATTTT
130 AAT-TTTTCGAACATTCCA-TGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTT
* * * *
18135787 GCAATCAACTATTGGTCTTTGACTT
192 GTAAACAACTTTTGGTCTTTGAATT
* ** *
18135812 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACAGGTCTAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * * * *
18135877 CTTTTATGATTTCTTTTATAACTTTGGTTCCTTTAAGTATTCTAAGATGATCCATTCTTTTGAGC
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTTGA-C
* * * ** * *
18135942 -AATTTTTTGAATATTCCATGCTCGGGAAATCACATCGCTAGGTCTAAATAGTTTGTAATTTTGT
129 AAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
*
18136006 AAACAACTTTT--TTTTTGAATT
194 AAACAACTTTTGGTCTTTGAATT
* * *
18136027 AAAAACTTATTT-CGTGAGAATT-TTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * * * * * *
18136090 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACAA
* * *
18136155 ATTTTTC-AAGCATTCCGTGCTCGAGAAATCGCATCATTTGGTC-AAATTGTTTGTCATTTTGTA
131 ATTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
18136218 AACAACTATTGGTCTATGAATT
195 AACAACTTTTGGTCTTTGAATT
* * *
18136240 AAAAACTTATATATGTGAAAATTGTTTCTCTCTTGGTTCTTGGATGAACTT-CTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAC-GAACTTGTCAA
* * *
18136304 ACTTTAATGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTTGACC
65 ACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACA
* * * *
18136369 AATTTTTTGAAAATTCCATGCTCGGGAAATCGAATCATTTGGTC-AAATTGTTTGTCATTTTGTA
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
18136433 AACAACTATTGGTCTATGAATT
195 AACAACTTTTGGTCTTTGAATT
* *
18136455 AAAAACTTATTTATGTGAGAATTCTTTCTCTCTTGGTTCTTGGATGAACTT-CTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAC-GAACTTGTCAA
* * *
18136519 AC-ATTACTGAGTTCTTTTATATCTTCGGTTACTTAAAGTATTCAAGACGATCCATT-CTTTCGA
65 ACTTTTA-TGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GA
*** * * * ** *
18136582 CAAATTTTAAAAACATTCCATGCTCTGGAAATCGAACCATTTGG-AGAAATTGTTTGTCATTTTG
128 CAAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
*
18136646 TAAACAACTTTTGGTGTTTGAATT
193 TAAACAACTTTTGGTCTTTGAATT
* * *
18136670 AAAAACTTATTTACGTGAGAA-TATTTCTCTCTTAGTTCTTGGATGAACTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * ** * * ** *
18136734 CTTTTATGAG-TCCTTCATAACTTCATTTCCTGAGAGTATTCAAGACGATCCATTCCTTCAACCA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACAA
* * * * * *
18136798 ATTTTTTGAACATTCCGTGCTCGAGAAATCGTAACATTTGGTCTAAAAAGTTTGTCATTTTGTAA
131 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
18136863 ACAACTTTTTGTCTTTGTATT
196 ACAACTTTTGGTCTTTGAATT
* * * * *
18136884 AAAAACTTATTTACGTGAGAATTGATTCTCTCTTGCTTCTTGGACGACCTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * *
18136949 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTTAAGTATTCAAAGTCGATCCATTCCTTTGAGA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTTGACA
* * * * * * * * * *
18137014 AATTTTCCAAATATTCCATACTCGAGAGATCGCATCCTTAGGTATAAACAGTTTGTCATTTTGTA
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
** *
18137079 AACAACATTTTTATTTTTGAATT
195 AACAAC-TTTTGGTCTTTGAATT
* * * * * * *
18137102 AAAAACTTATTTACGTGAGATTTGTTTCTCTTTTAGTTCTTGGATGAGCTTTCAAATTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * * * *
18137167 CTTTTATGGGTTATTTTATAACTTCGTTTCCTTAAAGTATTCAAGGGATGATCCATTCCTTTGAG
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA--GACGATCCATTCCTTTGAC
* * * * * * *
18137232 TAATTTTCCGATCATTGCATGCTAGGGAAATCGCATCATTTGGTCTAAATAGGTTGTCATTTTTT
129 AAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
18137297 AAACAAGTTTTGGCCTTTGAATA
194 AAACAACTTTTGGTCTTTGAATT
* * * * *
18137320 AAAAACTTATTTACCTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * * * *
18137385 CTTTTATGAGTTCTTTCATAACTTGGGTTCCTTAAAGTATTTAAAGATGATCCATTCCTTTTAGC
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTTGA-C
** * * * * *
18137450 -AATTTTAAGATCATTTCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTAGT
129 AAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
**
18137514 AAACAACTTTTTCTCTTTGAATT
194 AAACAACTTTTGGTCTTTGAATT
* * * ** * *
18137537 AAAAATTTAATTACGTGAGAATTGTTTCTCTC-TAGTT-TATGGACAAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGATGAACTTACGAACTTGTCAA
* * * * **
18137600 ACATTTACT-AATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCAAC
65 ACTTTTA-TGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAC
* * * * *
18137664 CAA-TTTTCAGAAAATTCCATGCTCAGGAAATCGCATCATTTGATCTAAAAAGTTTGTCATTTTG
129 AAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
*
18137728 TAAACAACTTTTGGTGTTTGAATT
193 TAAACAACTTTTGGTCTTTGAATT
* * ** *
18137752 AAAAACTTATTTACGTGAGAATTGTTTCCCTCTTGATTCTTGGACAAACTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * * * * * * * *
18137817 CTTTTATGAGTTTTTTTATTACTTCGATTCCTGAGAGTATTCAAGATGATTCATTCCTTCGACCA
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACAA
* * * * *
18137882 A-TTTTCTGAACATTTCGTGCTCGAGAAATCGCATCTTTTGGTCTAAAAAGTTTGTCATTTTGTA
131 ATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
** *
18137946 AACAA-TTTTTTTCTTTGTATT
195 AACAACTTTTGGTCTTTGAATT
* * ** *
18137967 AAAAACTTATTTACGTGAGAATTGATTCTCTCATGCCTCTTGGATGAACTTAC-ACACTAGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGA-ACTTGTCAA
* * * * *
18138031 ACTTTTATGAGTTCTTTTACAACTTCGTTTCCTTTAAGAATTCAAAGAGGATCCATTCCTTTGAG
65 ACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTTGA-
* * * * * *
18138096 C-AATTTTAT-GAATATTCCATACTCGAGAGATCGCATCATTAGGTATAAATAGTTTGTCATTTT
128 CAAATTTT-TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
** *
18138159 GTAAACAACTATTTTATTTTTGAATT
192 GTAAACAACT-TTTGGTCTTTGAATT
* * * *
18138185 AAAAACTTATTTATGTGAGATTTG-TT-TCTCTTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * * * *
18138248 CTTTTAAGAGTTCTTTTATAAGTTCGTTTCCTGAAAGTATTCAAGGATGATCCATTCCTTTGAGC
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTTGA-C
* * * * *
18138313 AAA-TTTCCGATCATTGCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGGTTGTCATTTTGT
129 AAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
18138377 AAGCACCTTTTAGTCTTTGTATT
194 AAACAACTTTTGGTCTTTGAATT
* * *
18138400 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTACAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * * * * *
18138465 ATTTTATGAGTTCTTTTATGACATT-GGTTCCTTTAAGTATTCAAAGACAATCTATTCCTTCGAG
66 CTTTTATGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTTGA-
* * * ** * * *
18138529 C-AATTTTTTGAATATTCCATACTCAAGAGATCGCATCATTAGGTATAAATAGTTTGTCATTTTG
128 CAAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* *
18138593 TAAACAACTTTTTTGTTTTTGAATT
193 TAAACAAC-TTTTGGTCTTTGAATT
* *
18138618 AAAAAC----TTACGTGAGATTTGTTTCTCTCTTGGTTCTTGGACGAACTT------TTG--AAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* * * *
18138671 -TTTTATGAGTACTTTTATATCTTCGTTTCCTTAAAGTATTCAAGGATGATCCATTCCTTTGAGC
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTTGA-C
* * * * *
18138735 -AATTTTTCGATCATTTCTTGCTCGGGAAATCGCATCATTTGGTCTAAATAGGTTGTCATTTTTT
129 AAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
18138799 AAACAACTTTTGGTCTTTGAA-T
194 AAACAACTTTTGGTCTTTGAATT
* * * *
18138821 AAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTACAAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
* *
18138886 CTTTTTATGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCATTCCTTT
66 C-TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTT
18138948 TAGCAATTGA
Statistics
Matches: 4458, Mismatches: 799, Indels: 448
0.78 0.14 0.08
Matches are distributed among these distances:
178 2 0.00
181 6 0.00
182 1 0.00
183 2 0.00
184 2 0.00
185 1 0.00
186 7 0.00
187 15 0.00
188 6 0.00
189 7 0.00
191 2 0.00
192 9 0.00
193 11 0.00
194 2 0.00
195 16 0.00
196 7 0.00
197 3 0.00
198 2 0.00
199 3 0.00
200 6 0.00
202 1 0.00
203 8 0.00
204 20 0.00
205 114 0.03
206 12 0.00
207 42 0.01
208 14 0.00
209 15 0.00
210 4 0.00
211 40 0.01
212 66 0.01
213 195 0.04
214 339 0.08
215 1211 0.27
216 997 0.22
217 851 0.19
218 293 0.07
219 83 0.02
222 4 0.00
223 3 0.00
224 7 0.00
225 8 0.00
226 8 0.00
227 6 0.00
228 7 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTCAAA
CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACAA
ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAACTTTTGGTCTTTGAATT
Found at i:18134510 original size:648 final size:646
Alignment explanation
Indices: 18133251--18138947 Score: 6012
Period size: 648 Copynumber: 8.9 Consensus size: 646
18133241 GCTCACATCA
* * *
18133251 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTAGTCAAA
* * * *
18133315 -TATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCC-TTCGAC
66 CT-TTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTC-AC
* * *** * * *
18133378 CAATTTTTTGAACACTCCATGCAAAAGAAATTGCATCATTTGGTCTAAAAATTTTGTCATTTTGT
129 CAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
18133443 AAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGCTTCTTG
194 AAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * **
18133508 GATGAACTTCCGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
259 GACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* * * * * * * * * *
18133573 AAGGCGACCCATTTCTTTGACAAATTTTTCAAACATTCCATGCCCTGGAAATCACTTTATTTGGT
324 AAGACGATCCATTCCTTCGAC-AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
* * *
18133638 C-AGATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAA
388 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
18133702 TTGTTT-TC-CTTTAGGTTCTTGGATGAACTTTCAAAGTTGTCAAACTTTTATGAGTTCTTTTAT
453 TTGTTTCTCTC-TT-GGTTCTTGGATGAACTCT-GAACTTGTCAAACTTTTATGAGTTCTTTTAT
* * * * * *
18133765 AATTTTGATTCCTTAAAGTATTCAAGGACGATCCATTCCTTTGAGCAATTTTTCTATCATTGCAT
515 AACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTTGACCAATTTTTCGAACATTGCAT
* * *
18133830 GCTCGGGAAA-CTGCATCATTAGGTCTAAATAGGTTGTCATTTTTTAAACAACTTTTGGTCTTTG
579 GCTCGGGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
18133894 AATT
643 AATT
* *
18133898 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAAGTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTAGTCAAA
* *
18133963 CTTTTATGAGTTCTTTTATAACTTCGGTTCTTTAAAGTATTTGAAGACGATCCATTCCTTTTCA-
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCC-TTTCAC
* ** *
18134027 CAATTTTTTGATTATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
129 CAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
18134092 AAAGAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTT-ATA
194 AAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * *
18134156 GACGAACTTTTGAACTTGTCAAACATTTACGAGTTCTTTTATAAATTCGGATCCTTAAAGTTTTC
259 GACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* * * * * * * *
18134221 AAGGCAATCCATTTCTTCGACAAATTTTTCGAACATTCCATACCCGGGAAATTGCTTCATTTGTT
324 AAGACGATCCATTCCTTCGAC-AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGT
* * *
18134286 C-AGATCGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAA
388 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
18134350 TTGTTTTTCT-TTGGGTTCTTAGACGAACTGCTGAACTTGTCAAACTTTTATGAGTTCTTTTATA
453 TTGTTTCTCTCTT-GGTTCTTGGATGAACT-CTGAACTTGTCAAACTTTTATGAGTTCTTTTATA
* * * ** *
18134414 ACTTCGATTACTTAAAGTATTTAAGGACGATCCATTCCTTTGAGAAATTTTTCGATCATTGCATG
516 ACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTTGACCAATTTTTCGAACATTGCATG
** * * *
18134479 CTCAAGAAATCGCATCATTTGGTCTAAATAGGTTGTTAGTTTT-TAAACAACTTTTGGTCTTTAA
580 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTGTAAACAACTTTTGGTCTTTGA
*
18134543 ATA
644 ATT
* * * *
18134546 AAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCCTGGACAAAGTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTAGTCAAA
*
18134611 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCATTCCTTTTCA-
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCC-TTTCAC
* * *
18134675 CAATTCTCTGATCATTCCATGCTCG-GTAGATCGCATCATTTGGTCT--A-A-------A--TT-
129 CAATTTTCTGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
18134726 T------C------TCTTTGAAATAAAAACTTAATTACGTGAGAATT-ATT-TCTCTT-GTTCAT
193 TAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * *
18134776 GGACGAACTTTCGAACTTGTCAAACATTTACGAGTTTTTTTATGAA-TTCGGTTCCTTAAAGTAT
258 GGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTAT-AACTTCGGTTCCTTAAAGTAT
* * * *
18134840 TAAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCTCGAGAAATTGCATCATTTG
322 TCAAGACGATCCATTCCTTCGA-CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTG
* * * * *
18134905 GTCTAAAAAGTTTGTAATTTTGTAAATAATTTTTGGTGTTTGAATTAAAAACTTATTTACGTGAG
386 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * *
18134970 AATTGTTTCTCTCTTGATTCTTAGATGAACTTTCGAACTTGTCAAACATTTT-CGAGTTCTTTTA
451 AATTGTTTCTCTCTTGGTTCTTGGATGAACTCT-GAACTTGTCAAAC-TTTTATGAGTTCTTTTA
* * * *
18135034 TAACTTCGGTT-CATAAAGGTATTCAAGATGATCCATTCCTTCGACCAATTTTCCGAACATTGCA
514 TAACTTCGGTTCCTTAAA-GTATTCAAGACGATCCATTCCTTTGACCAATTTTTCGAACATTGCA
* * ** * * *
18135098 TGCTTGAGAAATCAAATCATTTGGTCTAAAAAGTTTGTTATTTTTTAAACAACTTTTGGTCTTTG
578 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
18135163 AATT
643 AATT
** * * *
18135167 AAAAACTTATTTACGAAAGAATTGTTTCGC-CATTGGTTCTTGGACTAACTTTCGAACCT-GTCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTACGAA-CTAGTCA
* * * * * * * *
18135230 AACATTTACGATTTCTTTTATAACTTCGATTCCTGAGAGTATTCAGGACGATCCATTCCTTTGAC
64 AACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTCAC
* * * * * *
18135295 CAATTTTCTGAAAATTTCATGCTTGGGAAATCACATCATTTGGTC-AAATTA-TTAGTCATTTTG
129 CAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTTG
* * * * *
18135358 TAAACAACTATTGGTCTATGAATTCAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTT
193 TAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
18135423 GGACAAACTTCCGAACTTTTCAAACTTTAATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
258 GGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* *
18135488 CAAGACGATCCATTCCTTCGACAAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGG
323 CAAGACGATCCATTCCTTCGAC-AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* * * * * * *
18135553 TCTAAATAGGTTGTTA-TTT-TAAACAAC-TTTGGCTCTTGGAATAAAAAACTTTTTTATGTGAA
387 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG-TCTTTGAATTAAAAACTTATTTACGTGAG
* * * * * *
18135615 AATTGTTTGTTTCTTGGTTCTAGGATGAACTTCCGAACTTGTCAAACAATTTACGAGTTCTTTTA
451 AATTGTTTCTCTCTTGGTTCTTGGATGAAC-TCTGAACTTGTCAAAC-TTTTATGAGTTCTTTTA
* * * * * *
18135680 GAACTTCGGTTCCTGAGAGTATTCAAGACGATACATTCCTTCGACCAATATTTT-GAACATT-TA
514 TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACCAAT-TTTTCGAACATTGCA
* *** * * *
18135743 GTACTTACGAAATCGCATCATTTGGTC-AAATTA-TTTGTCATTTTGCAATCAACTATTGGTCTT
578 -TGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
*
18135806 TGACTT
641 TGAATT
* * *
18135812 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAAC-AGGTCTA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTA-GTCAA
* * * * * * *
18135876 ACTTTTATGATTTCTTTTATAACTTTGGTTCCTTTAAGTATTCTAAGATGATCCATTCTTTTGAG
65 ACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTTCAC
* * * * ** * *
18135941 CAATTTTTTGAATATTCCATGCTCGGGAAATCACATCGCTAGGTCTAAATAGTTTGTAATTTTGT
129 CAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
18136006 AAACAACTTTTT-T-TTTGAATTAAAAACTTATTT-CGTGAGAATT-TTTCTCTCTTGGTTCTTG
194 AAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * *
18136067 GACGAACTTTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTC
259 GACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* *
18136132 AAGACGATCCATTCCTTCGACCAATTTTTC-AAGCATTCCGTGCTCGAGAAATCGCATCATTTGG
324 AAGACGATCCATTCCTTCGA-CAATTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGG
* * * * * *
18136196 TC-AAATTGTTTGTCATTTTGTAAACAACTATTGGTCTATGAATTAAAAACTTATATATGTGAAA
387 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
*
18136260 ATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAACTTTAATGAGTTCTTTTATA
452 ATTGTTTCTCTCTTGGTTCTTGGATGAAC-TCTGAACTTGTCAAACTTTTATGAGTTCTTTTATA
* * * *
18136325 ACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTTGACCAATTTTTTGAAAATTCCATGC
516 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACCAATTTTTCGAACATTGCATGC
* * * *
18136390 TCGGGAAATCGAATCATTTGGTC-AAATTGTTTGTCATTTTGTAAACAACTATTGGTCTATGAAT
581 TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
18136454 T
646 T
* * * *
18136455 AAAAACTTATTTATGTGAGAATTCTTTCTCTCTTGGTTCTTGGATGAACTT-CTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTAC-GAACTAGTCAA
* * *
18136519 AC-ATTACTGAGTTCTTTTATATCTTCGGTTACTTAAAGTATTCAAGACGATCCATT-CTTTCGA
65 ACTTTTA-TGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTC-A
* *** * * ** *
18136582 CAAATTTTAAAAACATTCCATGCTCTG-GAAATCGAACCATTTGG-AGAAATTGTTTGTCATTTT
128 CCAATTTTCTGAACATTCCATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * *
18136645 GTAAACAACTTTTGGTGTTTGAATTAAAAACTTATTTACGTGAGAA-TATTTCTCTCTTAGTTCT
192 GTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * * * * ** * *
18136709 TGGATGAACTTACGAACTAGTCAAACTTTTATGAG-TCCTTCATAACTTCATTTCCTGAGAGTAT
257 TGGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * * * *
18136773 TCAAGACGATCCATTCCTTCAACCAATTTTTTGAACATTCCGTGCTCGAGAAATCGTAACATTTG
322 TCAAGACGATCCATTCCTTCGA-CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTG
* * *
18136838 GTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGTATTAAAAACTTATTTACGTGAG
386 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * *
18136903 AATTGATTCTCTCTTGCTTCTTGGACGACCT-TACGAACTAGTCAAACTTTTATGAGTTCTTTTA
451 AATTGTTTCTCTCTTGGTTCTTGGATGAACTCT--GAACTTGTCAAACTTTTATGAGTTCTTTTA
* * ** * * * *
18136967 TAACTTCGGTTCCTTTAAGTATTCAAAGTCGATCCATTCCTTTGAGAAATTTTCCAAATATTCCA
514 TAACTTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTTGACCAATTTTTCGAACATTGCA
* * * * * * * ** *
18137032 TACTCGAGAGATCGCATCCTTAGGTATAAACAGTTTGTCATTTTGTAAACAACATTTTTATTTTT
578 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTT
18137097 GAATT
642 GAATT
* * * * * * * * *
18137102 AAAAACTTATTTACGTGAGATTTGTTTCTCTTTTAGTTCTTGGATGAGCTTTCAAATTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTAGTCAAA
* * * * * *
18137167 CTTTTATGGGTTATTTTATAACTTCGTTTCCTTAAAGTATTCAAGGGATGATCCATTCCTTTGAG
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA--GACGATCCATTCCTTTCAC
* * * * * * * *
18137232 TAATTTTCCGATCATTGCATGCTAGGGAAATCGCATCATTTGGTCTAAATAGGTTGTCATTTTTT
129 CAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * *
18137297 AAACAAGTTTTGGCCTTTGAATAAAAAACTTATTTACCTAAGAATTGTTTCTCTCTTGGTTCTTG
194 AAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * *
18137362 GACGAAGTTACGAACTAGTCAAACTTTTATGAGTTCTTTCATAACTTGGGTTCCTTAAAGTATTT
259 GACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TT
* * ** ** * * *
18137427 AAAGATGATCCATTCCTTTTAGCAATTTTAAGATCATTTCATGCTCAGGAAATCGCATCATTTGG
323 CAAGACGATCCATTCCTTCGA-CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* * ** * *
18137492 TCTAAATAGTTTATCATTTAGTAAACAACTTTTTCTCTTTGAATTAAAAATTTAATTACGTGAGA
387 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* ** * * * *
18137557 ATTGTTTCTCTC-TAGTT-TATGGACAAACTTTCAAACTTGTCAAACATTTACT-AATTCTTTTA
452 ATTGTTTCTCTCTTGGTTCT-TGGATGAACTCT-GAACTTGTCAAACTTTTA-TGAGTTCTTTTA
* * ** * *
18137619 TAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCAACCAA-TTTTCAGAAAATTCCA
514 TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACCAATTTTTC-GAACATTGCA
* * * *
18137683 TGCTCAGGAAATCGCATCATTTGATCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTGTTTG
578 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
18137748 AATT
643 AATT
* * *
18137752 AAAAACTTATTTACGTGAGAATTGTTTCCCTCTTGATTCTTGGACAAACTTACGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTAGTCAAA
* * * * * * *
18137817 CTTTTATGAGTTTTTTTATTACTTCGATTCCTGAGAGTATTCAAGATGATTCATTCC-TTCGACC
66 CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTC-ACC
* * * *
18137881 AATTTTCTGAACATTTCGTGCTCGAGAAATCGCATCTTTTGGTCTAAAAAGTTTGTCATTTTGTA
130 AATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * **
18137946 AACAA-TTTTTTTCTTTGTATTAAAAACTTATTTACGTGAGAATTGATTCTCTCATGCCTCTTGG
195 AACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * * *
18138010 ATGAACTTAC-ACACTAGTCAAACTTTTATGAGTTCTTTTACAACTTCGTTTCCTTTAAGAATTC
260 ACGAACTTTCGA-ACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* * * * * * *
18138074 AAAGAGGATCCATTCCTTTGAGCAATTTTAT-GAATATTCCATACTCGAGAGATCGCATCATTAG
324 -AAGACGATCCATTCCTTCGA-CAATTTT-TCGAACATTCCATGCTCGGGAAATCGCATCATTTG
* ** * *
18138138 GTATAAATAGTTTGTCATTTTGTAAACAACTATTTTATTTTTGAATTAAAAACTTATTTATGTGA
386 GTCTAAATAGTTTGTCATTTTGTAAACAACT-TTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * *
18138203 GATTTG-TT-TCTCTTGGTTCTTGGATGAACTTTCAAACTTGTCAAACTTTTAAGAGTTCTTTTA
450 GAATTGTTTCTCTCTTGGTTCTTGGATGAACTCT-GAACTTGTCAAACTTTTATGAGTTCTTTTA
* * * * * * * *
18138266 TAAGTTCGTTTCCTGAAAGTATTCAAGGATGATCCATTCCTTTGAGCAAATTTCCGATCATTGCA
514 TAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTTGACCAATTTTTCGAACATTGCA
* * * * *
18138331 TGCTCGGGAAATCGCATCATTTGGTCTAAAAAGGTTGTCATTTTGTAAGCACCTTTTAGTCTTTG
578 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
*
18138396 TATT
643 AATT
* * * * *
18138400 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTACAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTAGTCAAA
* * * * *
18138465 ATTTTATGAGTTCTTTTATGACATT-GGTTCCTTTAAGTATTCAAAGACAATCTATTCC-TTCGA
66 CTTTTATGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTTC-A
* * * * * * * *
18138528 GCAATTTTTTGAATATTCCATACTCAAGAGATCGCATCATTAGGTATAAATAGTTTGTCATTTTG
128 CCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* *
18138593 TAAACAACTTTTTTGTTTTTGAATTAAAAAC----TTACGTGAGATTTGTTTCTCTCTTGGTTCT
193 TAAACAAC-TTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * *
18138654 TGGACGAAC-TT-----TTG--AAA-TTTTATGAGTACTTTTATATCTTCGTTTCCTTAAAGTAT
257 TGGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * * *
18138710 TCAAGGATGATCCATTCCTTTGAGCAATTTTTCGATCATTTCTTGCTCGGGAAATCGCATCATTT
322 TCAA-GACGATCCATTCCTTCGA-CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTT
* * *
18138775 GGTCTAAATAGGTTGTCATTTTTTAAACAACTTTTGGTCTTTGAA-TAAAAACTTATTTACCTGA
385 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * *
18138839 GAATTGTTTCTCTCTTGGTTCTTGGATGAAGT-TACAAACTAGTCAAACTTTTTATGAGTTCTTT
450 GAATTGTTTCTCTCTTGGTTCTTGGATGAACTCT--GAACTTGTCAAAC-TTTTATGAGTTCTTT
* *
18138903 CATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCATTCCTTT
512 TATAACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTT
18138948 TAGCAATTGA
Statistics
Matches: 4284, Mismatches: 640, Indels: 260
0.83 0.12 0.05
Matches are distributed among these distances:
619 4 0.00
620 59 0.01
621 301 0.07
622 126 0.03
623 38 0.01
629 2 0.00
631 2 0.00
632 1 0.00
635 1 0.00
636 24 0.01
637 16 0.00
638 150 0.04
639 51 0.01
640 4 0.00
641 33 0.01
642 65 0.02
643 451 0.11
644 302 0.07
645 269 0.06
646 185 0.04
647 563 0.13
648 858 0.20
649 266 0.06
650 167 0.04
651 142 0.03
652 80 0.02
653 124 0.03
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (646 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTAGTCAAA
CTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTCACCA
ATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
CGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
GACGATCCATTCCTTCGACAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
TTTCTCTCTTGGTTCTTGGATGAACTCTGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTC
GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGACCAATTTTTCGAACATTGCATGCTCGGG
AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
Found at i:18134881 original size:188 final size:191
Alignment explanation
Indices: 18134536--18134911 Score: 498
Period size: 188 Copynumber: 2.0 Consensus size: 191
18134526 CAACTTTTGG
* * * * *
18134536 TCTTTAAATAAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCCTGGACAAAGTTACGA
1 TCTTTAAATAAAAAACTTAATTACGTGAGAATTGATTCTCTCTTGGTTCATGGACAAACTTACGA
* *
18134601 ACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCAT
66 ACTAGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCAT
* *
18134666 TCCTTTTCACAATTCTCTGATCATTCCATGCTCG-GTAGATCGCATCATTTGGTCTAAATTTC
131 TCC-TTTCACAATTCTCTGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATTTC
* *
18134728 TCTTTGAAAT-AAAAACTTAATTACGTGAGAATT-ATT-TCTCTT-GTTCATGGACGAACTTTCG
1 TCTTT-AAATAAAAAACTTAATTACGTGAGAATTGATTCTCTCTTGGTTCATGGACAAACTTACG
* *
18134789 AACTTGTCAAACATTTACGAGTTTTTTTATGAA-TTCGGTTCCTTAAAGTA-TTAAAGACGATCC
65 AACTAGTCAAACATTTACGAGTTCTTTTAT-AACTTCGGTTCCTTAAAGTATTTAAAGACGATCC
* * *
18134852 ATTCC-TTCGACCAATTTTTTGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAA
129 ATTCCTTTC-A-CAATTCTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAA
18134912 AAGTTTGTAA
Statistics
Matches: 163, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
186 3 0.02
187 1 0.01
188 60 0.37
189 59 0.36
190 8 0.05
191 2 0.01
192 26 0.16
193 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (191 bp):
TCTTTAAATAAAAAACTTAATTACGTGAGAATTGATTCTCTCTTGGTTCATGGACAAACTTACGA
ACTAGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAAGACGATCCAT
TCCTTTCACAATTCTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATTTC
Found at i:18139544 original size:80 final size:79
Alignment explanation
Indices: 18139419--18139575 Score: 242
Period size: 80 Copynumber: 2.0 Consensus size: 79
18139409 CTAATTTTCA
* * * * *
18139419 TTTTAACACTTGTAGGGAAGCTAATGAGTCGTGTCTCTTCATTAGGATCTGATGTAGTTGAAAGG
1 TTTTAACACTTGTAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
18139484 GCATGACAATTTCGT
66 GCATGAC-ATTTCGT
* *
18139499 TTTTAACTCTTGTAGGGAAGCCAGTGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
1 TTTTAACACTTGTAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
18139564 GCATGACATTTC
66 GCATGACATTTC
18139576 TCCTTAATTA
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 5 0.07
80 65 0.93
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (79 bp):
TTTTAACACTTGTAGGGAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
GCATGACATTTCGT
Found at i:18140129 original size:48 final size:48
Alignment explanation
Indices: 18140008--18140130 Score: 210
Period size: 48 Copynumber: 2.6 Consensus size: 48
18139998 TTAATGCAAG
* *
18140008 GCATTTAACAAACAAAACATTTAATAATGCAGATTACTAAACAAAGAT
1 GCATTTAACAAACAAAACAATTAATGATGCAGATTACTAAACAAAGAT
*
18140056 GCATTTAACAAACAAAACAATTAATGATGCAGATTATTAAACAAAGAT
1 GCATTTAACAAACAAAACAATTAATGATGCAGATTACTAAACAAAGAT
*
18140104 GCATTTAACAAACAAAACACTTAATGA
1 GCATTTAACAAACAAAACAATTAATGA
18140131 AGCGTAATTA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.52, C:0.15, G:0.09, T:0.24
Consensus pattern (48 bp):
GCATTTAACAAACAAAACAATTAATGATGCAGATTACTAAACAAAGAT
Found at i:18140287 original size:22 final size:22
Alignment explanation
Indices: 18140260--18140301 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
18140250 TTAAAGATGC
* *
18140260 AAACATTTATTAAACTAAAATA
1 AAACATATATAAAACTAAAATA
*
18140282 AAACATATATAAAATTAAAA
1 AAACATATATAAAACTAAAA
18140302 AAGTCCTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (22 bp):
AAACATATATAAAACTAAAATA
Found at i:18140974 original size:215 final size:215
Alignment explanation
Indices: 18140444--18141625 Score: 1501
Period size: 215 Copynumber: 5.5 Consensus size: 215
18140434 TTTTCCGATC
* **
18140444 ATTCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTA
1 ATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * * * * * * *
18140509 TCTTTGAATTAACAATTTAATTACGTGAGAATTGTTTCTTTC-TAGTTCATGGACGAAATTTCAA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
* * * * *
18140573 ACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGATCTATT
131 ACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTT-CTTAGAGTATTCAAGACGATCCATT
* * *
18140638 CCTTCGACCAATTTTCCGAACA
195 CCTTTGACCAATTTTTC-AAAA
* * *
18140660 A-TCCATGCTCTAGAAATCGAATCATTTGGTCTTAAA-AGTTTGTTATTTTGTAAACAACTTTTG
1 ATTCCATGCTCGAGAAATCGCATCATTTGGTC-TAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * *
18140723 GTCTTTGAATTAAAAACTTGTTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCA
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * * *
18140788 AACTTGTCAAACATTAATGAGTTCTTTTATAACTTTGGTTCTTGAGAGTATTCAGGATGATCCAT
130 AACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCTT-AGAGTATTCAAGACGATCCAT
*
18140853 TCCTTTAACCAATTTTTCAAAA
194 TCCTTTGACCAATTTTTCAAAA
* * * * *
18140875 ATTCCATGCTCGGGAAATCGCATCACTTGGTC-AAATTGTTTGTAATTTTGTAAACAACTATTGG
1 ATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* ** * *
18140939 TCTATGAATTAAAAACTTATTTTTGTGAGAATTGTTTTTCTCTTGGTTCTTGGATGAACTTCCAA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
*
18141004 ACTTGTCAAAC-TTCAATGAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCAT
131 ACTTGTCAAACATT-TATGAGTTCTTTTATAACTTCGGTT-CTTAGAGTATTCAAGACGATCCAT
* *
18141068 TCCTTCGA-CAAATTTTCAAAA
194 TCCTTTGACCAATTTTTCAAAA
* *
18141089 CATTCCATGCTCGAGAAATCGCATCATTTGGTC-AAATTGTTTGTCATTTTGTAAATAACTTTTG
1 -ATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* *
18141153 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACG
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * * *
18141218 AACTAGTTAAACTTTTATGAGTTCTTTTATAACTTCGGTTCTTTTA-AGTATTTTAAGACGATCC
130 AACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTC--TTAGAGTA-TTCAAGACGATCC
* *
18141282 ATTCCTTTGAGCAATTTTTCAAAT
192 ATTCCTTTGACCAATTTTTCAAAA
* * * *
18141306 ATTTCATGCTCGAGAAATCGCATCATTAGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTG
1 ATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * * * *
18141371 TTTTTGAATT-AAAA---A--TACATAAGAATTGTTTCTCTCTTGGATCTTGGACGAACTTCCGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
**
18141430 ACTTGTCAAACATTTATGAGTTCTTTTATAACTTCAATTCTTGAGAGTATTCAAGACGATCCATT
131 ACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCTT-AGAGTATTCAAGACGATCCATT
* *
18141495 CCTTTGACCAATTTTTCGAAC
195 CCTTTGACCAATTTTTCAAAA
** * * * *
18141516 ATTCTGTGCTTGAGAAATTGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTTG
1 ATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* *
18141581 TCTTTGAATTAAAAACTTATATACGTGAGAATTGATTCTCTCTTG
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
18141626 TGATGCGAGC
Statistics
Matches: 849, Mismatches: 95, Indels: 44
0.86 0.10 0.04
Matches are distributed among these distances:
209 2 0.00
210 100 0.12
211 83 0.10
213 1 0.00
214 19 0.02
215 393 0.46
216 202 0.24
217 49 0.06
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (215 bp):
ATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
ACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCTTAGAGTATTCAAGACGATCCATTC
CTTTGACCAATTTTTCAAAA
Found at i:18141301 original size:431 final size:426
Alignment explanation
Indices: 18140444--18141625 Score: 1538
Period size: 431 Copynumber: 2.8 Consensus size: 426
18140434 TTTTCCGATC
* * *
18140444 ATTCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTA
1 ATTCCATGCTCGAGAAATCGCATCA-TTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTG
* * * * *
18140509 TCTTTGAATTAACAATTTAATTACGTGAGAATTGTTTCTT-TC-TAGTTCATGGACGAAATTTCA
65 TCTTTGAATTAA-AAATT-ATT-CGTGAGAATTGTTT-TTCTCTTGGTTCTTGGACGAACTTCCA
* * * * *
18140572 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGATCTAT
126 AACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCAT
* * * *
18140637 TCCTTCGACCAATTTTCCGAACAATCCATGCTCTAGAAATCGAATCATTTGGTCTTAAAAGTTTG
191 TCCTTCGACAAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTC-TAAAAGTTTG
* * *
18140702 TTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTGTTTAGGTGAGAATTGTTTCTCTCT
254 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * *
18140767 TGGTTCTTGGACGAACTTTCAAACTTGTCAAACATTAATGAGTTCTTTTATAACTTTGGTTCTTG
319 TGGTTCTTGGACGAACTTACAAACTAGTCAAACATTAATGAGTTCTTTTATAACTTCGGTTCTTG
* *
18140832 AGAGTATTCAGGATGATCCATTCCTTTAACCAATTTTTCAAAA
384 AGAGTATTCAAGACGATCCATTCCTTTAACCAATTTTTCAAAA
* * * * *
18140875 ATTCCATGCTCGGGAAATCGCATCACTTGGTC-AAATTGTTTGTAATTTTGTAAACAACTATTGG
1 ATTCCATGCTCGAGAAATCGCATCA-TTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTG
* * *
18140939 TCTATGAATTAAAAACTTATTTTTGTGAGAATTGTTTTTCTCTTGGTTCTTGGATGAACTTCCAA
65 TCTTTGAATTAAAAA-TTA--TTCGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTCCAA
*
18141004 ACTTGTCAAAC-TTCAATGAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCAT
127 ACTTGTCAAACATT-TATGAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCAT
* *
18141068 TCCTTCGACAAATTTTCAAAACATTCCATGCTCGAGAAATCGCATCATTTGGTC-AAATTGTTTG
191 TCCTTCGACAAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAA-AGTTTG
*
18141132 TCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
254 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * *
18141197 TGGTTCTTGGACGAACTTACGAACTAGTTAAACTTTTATGAGTTCTTTTATAACTTCGGTTCTTT
319 TGGTTCTTGGACGAACTTACAAACTAGTCAAACATTAATGAGTTCTTTTATAACTTCGGTTC-TT
* * * * *
18141262 TA-AGTATTTTAAGACGATCCATTCCTTTGAGCAATTTTTCAAAT
383 GAGAGTA-TTCAAGACGATCCATTCCTTTAACCAATTTTTCAAAA
*
18141306 ATTTCATGCTCGAGAAATCGCATCATTAGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTG
1 ATTCCATGCTCGAGAAATCGCATCATT-GGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTG
* * * * * *
18141371 TTTTTGAATTAAAAA-TA--CATAAGAATTGTTTCTCTCTTGGATCTTGGACGAACTTCCGAACT
65 TCTTTGAATTAAAAATTATTCGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACT
**
18141433 TGTCAAACATTTATGAGTTCTTTTATAACTTCAATT-CTTGAGAGTATTCAAGACGATCCATTCC
130 TGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTT-AGAGTATTCAAGACGATCCATTCC
* * ** * *
18141497 TTTGACCAATTTTTCGAACATTCTGTGCTTGAGAAATTGCATCATTTGGTCTAAAAAGTTTGTCA
194 TTCGA-CAAATTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCT-AAAAGTTTGTCA
* * *
18141562 TTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATATACGTGAGAATTGATTCTCTCTTG
257 TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
18141626 TGATGCGAGC
Statistics
Matches: 658, Mismatches: 76, Indels: 38
0.85 0.10 0.05
Matches are distributed among these distances:
425 3 0.00
426 127 0.19
427 78 0.12
428 3 0.00
429 8 0.01
430 187 0.28
431 211 0.32
432 41 0.06
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (426 bp):
ATTCCATGCTCGAGAAATCGCATCATTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGT
CTTTGAATTAAAAATTATTCGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTT
GTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAGAGTATTCAAGACGATCCATTCCTT
CGACAAATTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAAGTTTGTCATTTT
GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
TGGACGAACTTACAAACTAGTCAAACATTAATGAGTTCTTTTATAACTTCGGTTCTTGAGAGTAT
TCAAGACGATCCATTCCTTTAACCAATTTTTCAAAA
Found at i:18141747 original size:15 final size:16
Alignment explanation
Indices: 18141674--18141747 Score: 68
Period size: 15 Copynumber: 4.9 Consensus size: 16
18141664 GCTTGGAAGA
18141674 TGCGAGCACTGG-TGT
1 TGCGAGCACTGGATGT
* *
18141689 TGCAAGCACT-CATGT
1 TGCGAGCACTGGATGT
* *
18141704 TGCGAACACTGGA-CT
1 TGCGAGCACTGGATGT
*
18141719 TGCGAACACT-GATGT
1 TGCGAGCACTGGATGT
18141734 TGCGAGCA-TGGATG
1 TGCGAGCACTGGATG
18141748 AAAGGCGAGC
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
14 3 0.06
15 43 0.91
16 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (16 bp):
TGCGAGCACTGGATGT
Found at i:18147302 original size:23 final size:24
Alignment explanation
Indices: 18147258--18147311 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 24
18147248 GAGAGTTCTC
*
18147258 AAGAGGAAAAAGAAAACAAAAA-A
1 AAGAAGAAAAAGAAAACAAAAATA
* ** *
18147281 AAGAAGAAAATGAAAATGAAAATC
1 AAGAAGAAAAAGAAAACAAAAATA
18147305 AAGAAGA
1 AAGAAGA
18147312 TACCCATACA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 18 0.72
24 7 0.28
ACGTcount: A:0.72, C:0.04, G:0.19, T:0.06
Consensus pattern (24 bp):
AAGAAGAAAAAGAAAACAAAAATA
Found at i:18150155 original size:15 final size:15
Alignment explanation
Indices: 18150086--18150164 Score: 54
Period size: 15 Copynumber: 5.3 Consensus size: 15
18150076 TCCATGCTCA
*
18150086 CAACACGAGT-TTCG
1 CAACATGAGTGTTCG
*
18150100 CAACATCAGTGTTCG
1 CAACATGAGTGTTCG
* ** *
18150115 TATTATGAGTGTTTG
1 CAACATGAGTGTTCG
* *
18150130 CAGC-TCCAGTGTTCG
1 CAACAT-GAGTGTTCG
*
18150145 CAACATGAGTGCTCG
1 CAACATGAGTGTTCG
18150160 CAACA
1 CAACA
18150165 CCAGTGCTCA
Statistics
Matches: 47, Mismatches: 15, Indels: 5
0.70 0.22 0.07
Matches are distributed among these distances:
14 9 0.19
15 37 0.79
16 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (15 bp):
CAACATGAGTGTTCG
Found at i:18150169 original size:30 final size:30
Alignment explanation
Indices: 18150097--18150170 Score: 76
Period size: 30 Copynumber: 2.5 Consensus size: 30
18150087 AACACGAGTT
* * ** *
18150097 TCGCAACATCAGTGTTCGTATTATGAGTGT
1 TCGCAACACCAGTGTTCGCAACATGAGTGC
* * *
18150127 TTGCAGCTCCAGTGTTCGCAACATGAGTGC
1 TCGCAACACCAGTGTTCGCAACATGAGTGC
18150157 TCGCAACACCAGTG
1 TCGCAACACCAGTG
18150171 CTCACATCTT
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.28
Consensus pattern (30 bp):
TCGCAACACCAGTGTTCGCAACATGAGTGC
Found at i:18150170 original size:15 final size:15
Alignment explanation
Indices: 18150135--18150173 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
18150125 GTTTGCAGCT
*
18150135 CCAGTGTTCGCAACA
1 CCAGTGCTCGCAACA
**
18150150 TGAGTGCTCGCAACA
1 CCAGTGCTCGCAACA
18150165 CCAGTGCTC
1 CCAGTGCTC
18150174 ACATCTTTCA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.21
Consensus pattern (15 bp):
CCAGTGCTCGCAACA
Found at i:18163038 original size:24 final size:24
Alignment explanation
Indices: 18162990--18163039 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
18162980 TTTATAAGTA
* *
18162990 TCTTCTTGTTTTTCATTTTCATTT
1 TCTTCTTATTTTTCATCTTCATTT
* *
18163014 TCTTCTTATTTTTTATCTTCTTTT
1 TCTTCTTATTTTTCATCTTCATTT
18163038 TC
1 TC
18163040 CTCTAGAGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.08, C:0.18, G:0.02, T:0.72
Consensus pattern (24 bp):
TCTTCTTATTTTTCATCTTCATTT
Found at i:18165009 original size:48 final size:48
Alignment explanation
Indices: 18164955--18165074 Score: 195
Period size: 48 Copynumber: 2.5 Consensus size: 48
18164945 TTATGCTTCT
*
18164955 TTAAGTGTTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCA
1 TTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCA
* *
18165003 TTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTA
1 TTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCA
* *
18165051 TTAACTATTTTGTTTGTTAAATGC
1 TTAAGTGTTTTGTTTGTTAAATGC
18165075 TTTGTTAAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.24, C:0.09, G:0.14, T:0.53
Consensus pattern (48 bp):
TTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCA
Found at i:18171521 original size:48 final size:48
Alignment explanation
Indices: 18171402--18171521 Score: 177
Period size: 48 Copynumber: 2.5 Consensus size: 48
18171392 TTATGCTTCT
* * *
18171402 TTAAGTGTTTTTTTTGTTAAATGAATCTTTGTTTAATAGTCTGCATCA
1 TTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCA
* * *
18171450 TTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATTTGCATTA
1 TTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCA
*
18171498 TTAACTGTTTTGTTTGTTAAATGC
1 TTAAGTGTTTTGTTTGTTAAATGC
18171522 TTTGTTAAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.23, C:0.07, G:0.16, T:0.53
Consensus pattern (48 bp):
TTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCA
Found at i:18171539 original size:45 final size:46
Alignment explanation
Indices: 18171402--18171542 Score: 142
Period size: 48 Copynumber: 3.0 Consensus size: 46
18171392 TTATGCTTCT
* * *
18171402 TTAAGTGTTTTTTTTGTTAAATGAATCTTTGTTTAAT-AGTCTGCATCA
1 TTAAGTGTTTTGTTTGTTAAATG-A-CTTTGTTTAATGACT-TGCATTA
* * *
18171450 TTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATTTGCATTA
1 TTAAGTGTTTTGTTTGTTAAATG-A-CTTTGTTTAATGACTTGCATTA
* * *
18171498 TTAACTGTTTTGTTTGTTAAATG-CTTTGTTAAATGCCTTGCATTA
1 TTAAGTGTTTTGTTTGTTAAATGACTTTGTTTAATGACTTGCATTA
18171543 ATGCATCAGC
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
45 17 0.21
48 62 0.77
49 2 0.02
ACGTcount: A:0.23, C:0.09, G:0.16, T:0.52
Consensus pattern (46 bp):
TTAAGTGTTTTGTTTGTTAAATGACTTTGTTTAATGACTTGCATTA
Found at i:18172720 original size:5 final size:5
Alignment explanation
Indices: 18172710--18172769 Score: 65
Period size: 5 Copynumber: 12.4 Consensus size: 5
18172700 TGCTGTTTGG
18172710 AAGAA AAGAA AAGAA ACA-AA AAGAA AAGAA AA-AA AAGAA ACA-AA AAG-A
1 AAGAA AAGAA AAGAA A-AGAA AAGAA AAGAA AAGAA AAGAA A-AGAA AAGAA
*
18172758 AAGAA ATGAA AA
1 AAGAA AAGAA AA
18172770 AAATATCATA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
4 10 0.21
5 35 0.74
6 2 0.04
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.02
Consensus pattern (5 bp):
AAGAA
Found at i:18172744 original size:14 final size:14
Alignment explanation
Indices: 18172713--18172772 Score: 77
Period size: 14 Copynumber: 4.2 Consensus size: 14
18172703 TGTTTGGAAG
18172713 AAAAGAAAAGAAACA
1 AAAAGAAAAGAAA-A
18172728 AAAAGAAAAGAAAA
1 AAAAGAAAAGAAAA
18172742 AAAAGAAACA-AAAA
1 AAAAGAAA-AGAAAA
* *
18172756 GAAAGAAATGAAAA
1 AAAAGAAAAGAAAA
18172770 AAA
1 AAA
18172773 TATCATATTC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
14 26 0.65
15 14 0.35
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.02
Consensus pattern (14 bp):
AAAAGAAAAGAAAA
Found at i:18172748 original size:24 final size:24
Alignment explanation
Indices: 18172710--18172769 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
18172700 TGCTGTTTGG
18172710 AAGAAAAGAAAAGAAACAAAAAGAA
1 AAGAAAAGAAAAGAAACAAAAAG-A
18172735 AAGAAAA-AAAAGAAACAAAAAGA
1 AAGAAAAGAAAAGAAACAAAAAGA
*
18172758 AAGAAATGAAAA
1 AAGAAAAGAAAA
18172770 AAATATCATA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
23 7 0.21
24 19 0.58
25 7 0.21
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.02
Consensus pattern (24 bp):
AAGAAAAGAAAAGAAACAAAAAGA
Found at i:18180477 original size:15 final size:15
Alignment explanation
Indices: 18180459--18180538 Score: 63
Period size: 15 Copynumber: 5.3 Consensus size: 15
18180449 CTTTCATCCA
18180459 TGCTCGCAACATCAG
1 TGCTCGCAACATCAG
*
18180474 TGCTCGCAACATGAG
1 TGCTCGCAACATCAG
* * *
18180489 TGTTTGCAGC-TCCAG
1 TGCTCGCAACAT-CAG
* ** *
18180504 TGTTCATAACATGAG
1 TGCTCGCAACATCAG
*
18180519 TGCTCGCAACACCAG
1 TGCTCGCAACATCAG
18180534 TGCTC
1 TGCTC
18180539 ACATCTTCCA
Statistics
Matches: 48, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
14 1 0.02
15 46 0.96
16 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.25
Consensus pattern (15 bp):
TGCTCGCAACATCAG
Found at i:18180534 original size:30 final size:30
Alignment explanation
Indices: 18180459--18180541 Score: 94
Period size: 30 Copynumber: 2.8 Consensus size: 30
18180449 CTTTCATCCA
* *
18180459 TGCTCGCAACATCAGTGCTCGCAACATGAG
1 TGCTCGCAACACCAGTGCTCACAACATGAG
* * * * * *
18180489 TGTTTGCAGCTCCAGTGTTCATAACATGAG
1 TGCTCGCAACACCAGTGCTCACAACATGAG
18180519 TGCTCGCAACACCAGTGCTCACA
1 TGCTCGCAACACCAGTGCTCACA
18180542 TCTTCCAAGC
Statistics
Matches: 39, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (30 bp):
TGCTCGCAACACCAGTGCTCACAACATGAG
Found at i:18181006 original size:216 final size:216
Alignment explanation
Indices: 18180632--18181893 Score: 1395
Period size: 216 Copynumber: 5.8 Consensus size: 216
18180622 AGAGTATTGG
* * * *
18180632 AGACGATCCATTCCTTCGACCAATATTCTGAACATTCCATACTCGAGAAATTGCATCATTTGGTC
1 AGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCTCGAGAAATTGAATCATTTGGTC
* * *
18180697 TAAAAAGTTTGTCATTTTGTAAACAACATTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
66 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* *
18180762 TGTTTCTCTCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAACATTTACAATTTCTTTTATAAC
131 TGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTACAAGTTCTTTTATAAC
* *
18180827 TTCAGTTCATGAAGGTATTCA
196 TTCGGTTCCTGAAGGTATTCA
* *
18180848 AGACGATCCATTCCTTCGACCAATTTTTTGAACATTGCATGCACGAGAAATTGAATCATTTGGTC
1 AGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCTCGAGAAATTGAATCATTTGGTC
* **
18180913 TAAATAGTTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGATATTTACGTGAGAAT
66 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
18180978 TATTTCTCTCTTAGTTCTTGGATGAACTTTTGAACTTGTCAAACATTTACGAGTTCTTTTATAAC
131 TGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTACAAGTTCTTTTATAAC
*
18181043 TTTGGTTCCTG-AGAGTATTCA
196 TTCGGTTCCTGAAG-GTATTCA
* * * * * * * *
18181064 GGATGAACCATTCCTTTGACAAATTTTTTGAAAATTCCATGCTCGAGAAATCGCATCATTTGGTC
1 AGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCTCGAGAAATTGAATCATTTGGTC
* * * *
18181129 -AAATTGTTTGTCATTTTGTAAACAACTATTGGTCTATGAATTAAAAACTTATTTATGT-AGGAA
66 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-GAA
** * *
18181192 TTGTTTCTCTCTTGGTTCTTGGACAAACTTTCTAAATTGTCAAA-ATTTA-ATGAGTTCTTTTAT
130 TTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTACA--AGTTCTTTTAT
* *
18181255 AACTTCGGTTCCTTAAAAAGTATTCA
193 AACTTCGGTTCC-T-GAAGGTATTCA
* * *** * *
18181281 AGACAATCCATTCCTTCGACGAATTTTCCAAACATTCCATGCTTTG-GAAA-TCACATCATTTGG
1 AGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGC-TCGAGAAATTGA-ATCATTTGG
* * * * * *
18181344 T-GAAATTGTTTGTCATTTTGAAAATAACTTTTGGCCTTTGAATTAAAAACTTATTTACATGAGA
64 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * * * * **
18181408 ATTGTTTCTCTCTTTGTTCTTGGACGAACTTACGAAATAGTCAAACTTTTATGAGTTCTTTTATA
129 ATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTACAAGTTCTTTTATA
* * **
18181473 ACTTCGATTCCTTTAA-CAATTCAA
194 ACTTCGGTTCC-TGAAGGTATTC-A
* * ** * ** * * * * * * *
18181497 AGACAATCCATTCCTTTGAGTAAATTTTCAAATATTCCATACTAG-GGAACTCACATCATTAGGT
1 AGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCTCGAGAAATTGA-ATCATTTGGT
*
18181561 CTAAATAGTTTGTCATTTTGTAAAAAACTTCTTTGGT-TTTGAATTAAAAACTTATTTACGTGAG
65 CTAAATAGTTTGTCATTTTGTAAACAAC-T-TTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * *
18181625 AATTGTTTCTCTCTTGGTTCATGGATCAAGTTTCGAACCTGTCAAAACATTTACAGGTTCTTTTA
128 AATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC-AAACATTTACAAGTTCTTTTA
18181690 TAACTTCGGTTCCTG-AGAGTATTCA
192 TAACTTCGGTTCCTGAAG-GTATTCA
* * * * *
18181715 GGATGATCCATTCCTTTGACCAATTTTAAT-AACATTCCATGCTCG-GAAAATTGCATCATTTGG
1 AGACGATCCATTCCTTCGACCAATTTT-TTGAACATTCCATGCTCGAG-AAATTGAATCATTTGG
* * * * *
18181778 TC-AAATTGTTTGTCATTTTGTAAACTACTTTTTGTATTTGAATTAAAAACTTATTTTCGTGAGA
64 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
*
18181842 ATTGTTTCTCTCTTGGTTATTGGATGAAC-TTCTGAACTTGTCAAACATTTAC
129 ATTGTTTCTCTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACATTTAC
18181894 GTTTGTTATA
Statistics
Matches: 881, Mismatches: 140, Indels: 51
0.82 0.13 0.05
Matches are distributed among these distances:
214 6 0.01
215 142 0.16
216 360 0.41
217 217 0.25
218 115 0.13
219 41 0.05
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (216 bp):
AGACGATCCATTCCTTCGACCAATTTTTTGAACATTCCATGCTCGAGAAATTGAATCATTTGGTC
TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
TGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTACAAGTTCTTTTATAAC
TTCGGTTCCTGAAGGTATTCA
Found at i:18181885 original size:651 final size:650
Alignment explanation
Indices: 18180632--18181892 Score: 1641
Period size: 651 Copynumber: 1.9 Consensus size: 650
18180622 AGAGTATTGG
* ** **
18180632 AGACGATCCATTCCTTCGACCAATATTCTGAACATTCCATACTCGAGAAATTGCATCATTTGGTC
1 AGACAATCCATTCCTTCGACCAATATTCCAAACATTCCATACTCGAGAAATCACATCATTTGGTC
* * * *
18180697 TAAAAAGTTTGTCATTTTGTAAACAACATTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
66 GAAAAAGTTTGTCATTTTGAAAACAACATTTAGCCTTTGAATTAAAAACTTATTTACATGAGAAT
* * * * * *
18180762 TGTTTCTCTCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAACATTTACAATTTCTTTTATAAC
131 TGTTTCTCTCTTGGTTCTTGGACGAACTTACGAAATAGTCAAACATTTACAAGTTCTTTTATAAC
** * * ** * *
18180827 TTCAGTTCATGAAGGTATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTGCATGCAC
196 TTCAGTTCATGAAGCAATTCAAGACAATCCATTCCTTCGACCAAATTTTCAAACATTCCATACAC
* * * * *
18180892 GAGAAATTGAATCATTTGGTCTAAATAGTTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTA
261 GAGAAACTCAATCATTAGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTA
* * * * *
18180957 AAAAGATATTTACGTGAGAATTATTTCTCTCTTAGTTCTTGGATGAACTTTTGAACTTGTCAAAC
326 AAAACATATTTACGTGAGAATTATTTCTCTCTTAGTTCATGGATCAACTTTCGAACCTGTCAAAC
*
18181022 ATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAGGATGAACCATTCCTTTGACAAA
391 ATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAGGATGAACCATTCCTTTGACAAA
*
18181087 TTTTTTGAAAATTCCATGCTCGAGAAATCGCATCATTTGGTCAAATTGTTTGTCATTTTGTAAAC
456 TTTTATGAAAATTCCATGCTCGAGAAATCGCATCATTTGGTCAAATTGTTTGTCATTTTGTAAAC
* *
18181152 AACTATTGGTCTATGAATTAAAAACTTATTTATGTAGGAATTGTTTCTCTCTTGGTTCTTGGACA
521 AACTATTGGTATATGAATTAAAAACTTATTTATGTAGGAATTGTTTCTCTCTTGGTTATTGGACA
18181217 AACTTTCTAAATTGTCAAA-ATTTAATGAGTTCTTTTATAACTTCGGTTCCTTAAAAAGTATTCA
586 AACTTTCTAAATTGTCAAACATTTAATGAGTTCTTTTATAACTTCGGTTCCTTAAAAAGTATTCA
* * * *
18181281 AGACAATCCATTCCTTCGACGAATTTTCCAAACATTCCATGCTTTG-GAAATCACATCATTTGGT
1 AGACAATCCATTCCTTCGACCAATATTCCAAACATTCCATAC-TCGAGAAATCACATCATTTGGT
** * * *
18181345 -GAAATTGTTTGTCATTTTGAAAATAACTTTTGGCCTTTGAATTAAAAACTTATTTACATGAGAA
65 CGAAAAAGTTTGTCATTTTGAAAACAACATTTAGCCTTTGAATTAAAAACTTATTTACATGAGAA
* * **
18181409 TTGTTTCTCTCTTTGTTCTTGGACGAACTTACGAAATAGTCAAACTTTTATGAGTTCTTTTATAA
130 TTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAAATAGTCAAACATTTACAAGTTCTTTTATAA
* * * ** *
18181474 CTTC-GATTCCTTTAA-CAATTCAAAGACAATCCATTCCTTTGAGTAAATTTTCAAATATTCCAT
195 CTTCAG-TT-CATGAAGCAATTC-AAGACAATCCATTCCTTCGACCAAATTTTCAAACATTCCAT
*
18181537 ACTA-G-GGAACTCACATCATTAGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTCTTTGGT-T
257 AC-ACGAGAAACTCA-ATCATTAGGTCTAAATAGTTTGTCATTTTGTAAAAAAC-T-TTTGGTCT
* * * *
18181599 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCATGGATCAAGTTTCGAACC
318 TTGAATTAAAAACATATTTACGTGAGAATTATTTCTCTCTTAGTTCATGGATCAACTTTCGAACC
*
18181664 TGTCAAAACATTTAC-AGGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAGGATGATCCATTC
383 TGTC-AAACATTTACGA-GTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAGGATGAACCATTC
* * *
18181728 CTTTGACCAATTTTAAT-AACATTCCATGCTCG-GAAAATTGCATCATTTGGTCAAATTGTTTGT
446 CTTTGACAAATTTT-ATGAAAATTCCATGCTCGAG-AAATCGCATCATTTGGTCAAATTGTTTGT
* * * *
18181791 CATTTTGTAAACTACTTTTTGTATTTGAATTAAAAACTTATTT-TCGT-GAGAATTGTTTCTCTC
509 CATTTTGTAAACAACTATTGGTATATGAATTAAAAACTTATTTAT-GTAG-GAATTGTTTCTCTC
** *
18181854 TTGGTTATTGGATGAAC-TTCTGAACTTGTCAAACATTTA
572 TTGGTTATTGGACAAACTTTCT-AAATTGTCAAACATTTA
18181893 CGTTTGTTAT
Statistics
Matches: 524, Mismatches: 72, Indels: 29
0.84 0.12 0.05
Matches are distributed among these distances:
647 1 0.00
648 125 0.24
649 125 0.24
650 73 0.14
651 194 0.37
652 6 0.01
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (650 bp):
AGACAATCCATTCCTTCGACCAATATTCCAAACATTCCATACTCGAGAAATCACATCATTTGGTC
GAAAAAGTTTGTCATTTTGAAAACAACATTTAGCCTTTGAATTAAAAACTTATTTACATGAGAAT
TGTTTCTCTCTTGGTTCTTGGACGAACTTACGAAATAGTCAAACATTTACAAGTTCTTTTATAAC
TTCAGTTCATGAAGCAATTCAAGACAATCCATTCCTTCGACCAAATTTTCAAACATTCCATACAC
GAGAAACTCAATCATTAGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTA
AAAACATATTTACGTGAGAATTATTTCTCTCTTAGTTCATGGATCAACTTTCGAACCTGTCAAAC
ATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAGGATGAACCATTCCTTTGACAAA
TTTTATGAAAATTCCATGCTCGAGAAATCGCATCATTTGGTCAAATTGTTTGTCATTTTGTAAAC
AACTATTGGTATATGAATTAAAAACTTATTTATGTAGGAATTGTTTCTCTCTTGGTTATTGGACA
AACTTTCTAAATTGTCAAACATTTAATGAGTTCTTTTATAACTTCGGTTCCTTAAAAAGTATTCA
Found at i:18182622 original size:217 final size:216
Alignment explanation
Indices: 18181907--18184135 Score: 2466
Period size: 217 Copynumber: 10.3 Consensus size: 216
18181897 TGTTATAAAA
* * ** *
18181907 GAATGTTCGAAAAATTGGTCGAAGGAATGGACCGCCCTGAATACTCTCAGGAACTGAAGTTATAA
1 GAATGTTCGGAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACTGAAGTTATAA
* * *
18181972 AAGAAC-CTGTAAAAGTTTTACAAGTTCGAAACTTCATCCAAGAACCAAGAGAGAAACAATTCTC
66 AAGAACTCT-TAAATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
* * * *
18182036 ACGTAAATAAGTTTTTAATTCAAAGACCAACAGTTTTTTTACAAAAAGACAAACTTTTTAGACCA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACCA
**
18182101 AATGATGCGATTTCTCGAGCACA
194 AATGATGCGATTTCTCGAGCATG
* * * ** * * *
18182124 AAATTTTCGGAATATTGGTCGAAGGAATGGATTGTCTTGAATATTGTTAGGAACTGAAGTTATAA
1 GAATGTTCGGAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACTGAAGTTATAA
* *
18182189 AAGAACTCGTAAATGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCTTAAATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCA
* *
18182254 CGTAAATAAGTTTTTAATTCAAAGACCAGAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* **
18182319 TGATGCAATTTCTCGATTATG
196 TGATGCGATTTCTCGAGCATG
* * * ** *
18182340 GAATGTT-TGAAATATTGGTCGAAGGAATGGATCATCTCGAATACTCTCAGGCACCAAATTTATA
1 GAATGTTCGGAAA-ATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACTGAAGTTATA
* * * *
18182404 AAGGAACTCTTAAATGTTTGACAAGATCGGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTC
65 AAAGAACTCTTAAATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
* * * *
18182469 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTTACAAAAAGGCAAACTTTTTAGACCA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACCA
* *
18182534 AATGATGCGATTTCTTGAGCACG
194 AATGATGCGATTTCTCGAGCATG
* * * * *
18182557 GAATGTTCGGAATATTGGTCGAAGGTATGGATCATCTTGAATACTGTCAAGAACTAAAGTTATAA
1 GAATGTTCGGAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACTGAAGTTATAA
* **
18182622 AAGAACTCGTAAATGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCTTAAATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCA
*
18182687 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* *
18182752 TGATGCGATTTCTCGAGTACG
196 TGATGCGATTTCTCGAGCATG
* * * * * * * *
18182773 GAATGTTCGGAATATTGGTAGAGGGAATGGATCGTCTCGAATACTCTCAGGCAC-CAGATTTATA
1 GAATGTTCGGAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACTGA-AGTTATA
* * * * * *
18182837 AAAGAACCCTTAAATGTTTGACAAGATT-GACAGTTCGTCCAAGAGCTAAGAGAGAATCAATTCT
65 AAAGAACTCTTAAATGTTTGACAAG-TTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * *
18182901 CACGTAAATAAGTTTTTAATTCAAAAACCAAAAGTAGTTTACAAAATGACAAACAATTT-GACCA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
18182965 AATGATGCGATTTCTCGAGCATG
194 AATGATGCGATTTCTCGAGCATG
* * * *
18182988 GAATGTTTGAAAAATTGGTCGAAGGAGTGGATCATCCTGAATACTCTCAGGAA-TCGAAGTTATA
1 GAATGTTCGGAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACT-GAAGTTATA
* *
18183052 AAAGAACT-TGTAAAGGTTTGACAAGTTCGAAACTTCATCCAAGAACCAAGAGAGAAACAATTCT
65 AAAGAACTCT-TAAATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
*
18183116 CACGTAAATAAGTTTTTAATT-AAAAACCAAAAAAGTT-TTCTACAAAATGACAAACTATTTAGA
129 CACGTAAATAAGTTTTTAATTCAAAGACC--AAAAGTTGTT-TACAAAATGACAAACTATTTAGA
* *
18183179 CCTAATGATGC-ATTTTTCCGAGCATG
191 CCAAATGATGCGATTTCT-CGAGCATG
* * ** * * * * *
18183205 GAATATTCAGAAAATTACTCAAAGGAATGCATCGTCTTTGAATACT-TAAGGGAA-TCGTAGTTA
1 GAATGTTCGGAAAATTGGTCGAAGGAATGGATCATC-TTGAATACTCTCA-GGAACT-GAAGTTA
* *
18183268 TAAAAGAACTCATAAAAGTTTGAC----T----AGTTCATCCAAGAACCAAGAGAGAAACAATTC
63 TAAAAGAACTCTTAAATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * ** * *
18183325 TCACGTAAATAAGTTTTTTAATTCAAAGGCCAAAACTTATTTTTAAAATGACAAACAATTT-CAC
128 TCACGTAAATAAG-TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
*
18183389 CAAATGATGTGATTTCTCGAGCATG
192 CAAATGATGCGATTTCTCGAGCATG
* * * * *
18183414 GAATGGTT-GGAAAATTCGTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATA
1 GAAT-GTTCGGAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACTGAAGTTATA
* * * *
18183478 AAAGAACTCATTAAAAAGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAGTTC
65 AAAGAACTC-TT-AAATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * * * *
18183543 TCACATAAATAAGTTTTTAATTCATAGACCAATAGTTGTTTACAAAATGATAAACAATTT-GATC
128 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* *
18183607 AAATGATGTGATTTCCCGAGCATG
193 AAATGATGCGATTTCTCGAGCATG
* * * * * *
18183631 CAATTTTTGAAAAATTGGT-GAAAGGAATGGAT-AGTCCTGAATACTCTAAGGAA-TCGAAGTTA
1 GAATGTTCGGAAAATTGGTCG-AAGGAATGGATCA-TCTTGAATACTCTCAGGAACT-GAAGTTA
* * * * *
18183693 TAAAAGAACTCGTAAATGTTTGACAAGTTCGAAATTTCGTCCAACAACTAAGAGAGAAACAATTC
63 TAAAAGAACTCTTAAATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * * * *
18183758 TAATGTAAATACGTTTTAAATTCAAATG-CCAAAAGTTGTTTAAAAAATGACAACCTATTTAGAC
128 TCACGTAAATAAGTTTTTAATTCAAA-GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* *
18183822 CAAATTATGCAATTTCTCGAGCATG
192 CAAATGATGCGATTTCTCGAGCATG
* * * * * * * * * *
18183847 CAATGATCGAAAAATTGCTCAAAGGAGTGGATCATCCTTAAATACTTTAAGGAA-TCAAAGTTAT
1 GAATGTTCGGAAAATTGGTCGAAGGAATGGATCAT-CTTGAATACTCTCAGGAACT-GAAGTTAT
* * * * * * * * *
18183911 AAAAGAACTCATAAAAGTTTGACATA-TTTGGAAGTTCGTCCAAGAACCCACAAAAAAACAATTC
64 AAAAGAACTCTTAAATGTTTGACA-AGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * * **
18183975 TCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATAACAAACAATCGA-ACC
128 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * *
18184039 AAATGATGCGATTTCCCCAGCACG
193 AAATGATGCGATTTCTCGAGCATG
* * * * * * *
18184063 AAATTTTCAGAAAATTGGTCAAAGGAATGGATCGTCCTGAATACTCTCAGGAACCGAAGTTATAA
1 GAATGTTCGGAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACTGAAGTTATAA
18184128 AAGAACTC
66 AAGAACTC
18184136 AAAATAATCA
Statistics
Matches: 1713, Mismatches: 252, Indels: 96
0.83 0.12 0.05
Matches are distributed among these distances:
208 30 0.02
209 49 0.03
210 85 0.05
211 11 0.01
212 5 0.00
214 12 0.01
215 277 0.16
216 529 0.31
217 627 0.37
218 88 0.05
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
GAATGTTCGGAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACTGAAGTTATAA
AAGAACTCTTAAATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
TGATGCGATTTCTCGAGCATG
Found at i:18182713 original size:433 final size:431
Alignment explanation
Indices: 18181907--18184135 Score: 2521
Period size: 433 Copynumber: 5.2 Consensus size: 431
18181897 TGTTATAAAA
* * * *
18181907 GAATGTTCGAAAAATTGGTCGAAGGAATGGACCG-CCCTGAATACTCTCAGGAACTGAAGTTATA
1 GAATGTTTG-AAAATTGGTCGAAGGAATGGATCGTCTCTGAATACTCTCAGGAACCGAAGTTATA
* * * *
18181971 AAAGAAC-CTGTAAAAGTTTTACAAGTTCGAAACTTCATCCAAGAACCAAGAGAGAAACAATTCT
65 AAAGAACTCT-TAAATGTTTGACAAGATCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* *
18182035 CACGTAAATAAGTTTTTAATTCAAAGACCAACAGTTTTTTTACAAAAAGACAAACTTTTTAGACC
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTTACAAAAAGACAAACTATTTAGACC
*** * * **
18182100 AAATGATGCGATTTCTCGAGCACAAAATTTTCGGAATATTGGTCGAAGGAATGGATTGTCTTGAA
194 AAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGGTCGAAGG-ATGGATCATCTTGAA
* * * * *
18182165 TATTGTTAGGAACTGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAAAAGTTCATCCAA
258 TACT-TTAAGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
*
18182230 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAGAAGTTGTTTACA
322 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * **
18182295 AAATGACAAACTTTTTAGACCAAATGATGCAATTTCTCGATTATG
387 AAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATG
* * * *
18182340 GAATGTTTGAAATATTGGTCGAAGGAATGGATCATCTC-GAATACTCTCAGGCACCAAATTTATA
1 GAATGTTTGAAA-ATTGGTCGAAGGAATGGATCGTCTCTGAATACTCTCAGGAACCGAAGTTATA
* * *
18182404 AAGGAACTCTTAAATGTTTGACAAGATCGGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTC
65 AAAGAACTCTTAAATGTTTGACAAGATCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
* *
18182469 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTTACAAAAAGGCAAACTTTTTAGACCA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTTACAAAAAGACAAACTATTTAGACCA
* * *
18182534 AATGATGCGATTTCTTGAGCACGGAATGTTCGGAATATTGGTCGAAGGTATGGATCATCTTGAAT
195 AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGGTCGAAGG-ATGGATCATCTTGAAT
* * * *
18182599 ACTGTCAAGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGAAAGTTTGTCCAAG
259 ACT-TTAAGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
18182664 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
323 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* * *
18182729 AATGACAAACTTTTTAGACCAAATGATGCGATTTCTCGAGTACG
388 AATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATG
* * * * * *
18182773 GAATGTTCGGAATATTGGTAGAGGGAATGGATCGTCTC-GAATACTCTCAGGCACC-AGATTTAT
1 GAATGTT-TGAAAATTGGTCGAAGGAATGGATCGTCTCTGAATACTCTCAGGAACCGA-AGTTAT
* * * * * * *
18182836 AAAAGAACCCTTAAATGTTTGACAAGATTGACAGTTCGTCCAAGAGCTAAGAGAGAATCAATTCT
64 AAAAGAACTCTTAAATGTTTGACAAGATCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* ** * *
18182901 CACGTAAATAAGTTTTTAATTCAAAAACCAAAAG-TAGTTTACAAAATGACAAACAATTT-GACC
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTTACAAAAAGACAAACTATTTAGACC
* * *
18182964 AAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGGTCGAAGGAGTGGATCATCCTGAA
194 AAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGGTCGAAGGA-TGGATCATCTTGAA
* * * * * *
18183029 TACTCTCAGGAA-TCGAAGTTATAAAAGAACTTGTAAAGGTTTGACAAGTTCGAAACTTCATCCA
258 TACT-TTAAGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA
*
18183093 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT-AAAAACCAAAAAAGTT-TTC
321 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC--AAAAGTTGTT-
* *
18183156 TACAAAATGACAAACTATTTAGACCTAATGATGC-ATTTTTCCGAGCATG
383 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATG
* * ** * * * * * *
18183205 GAATATTCAGAAAATTACTCAAAGGAATGCATCGTCTTTGAATACT-TAAGGGAATCGTAGTTAT
1 GAATGTT-TGAAAATTGGTCGAAGGAATGGATCGTCTCTGAATACTCTCA-GGAACCGAAGTTAT
* *
18183269 AAAAGAACTCATAAAAGTTTGAC----T----AGTTCATCCAAGAACCAAGAGAGAAACAATTCT
64 AAAAGAACTCTTAAATGTTTGACAAGATCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
18183326 CACGTAAATAAGTTTTTTAATTCAAAGGCCAAAACTTATTTTT--AAAATGACAAACAATTT-CA
129 CACGTAAATAAG-TTTTTAATTCAAAGACCAAAAGTT-TTTTTACAAAAAGACAAACTATTTAGA
* * *
18183388 CCAAATGATGTGATTTCTCGAGCATGGAATGGTT-GGAAAATTCGTCAAAGGAATGGATCATCTT
192 CCAAATGATGCGATTTCTCGAGCATGGAAT-GTTCGGAAAATTGGTCGAAGG-ATGGATCATCTT
* * *
18183452 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATTAAAAAGTTTGACAAGTTCAAAAGTTCG
255 GAATACTTTAA-GAACTGAAGTTATAAAAGAACTC-GT-AAAAGTTTGACAAGTTCGAAAGTTCG
* * * *
18183517 TCCAAGAACCAAGAGAGAAACAGTTCTCACATAAATAAGTTTTTAATTCATAGACCAATAGTTGT
317 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * * *
18183582 TTACAAAATGATAAACAATTT-GATCAAATGATGTGATTTCCCGAGCATG
382 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATG
* * * * *
18183631 CAATTTTTGAAAAATTGGT-GAAAGGAATGGATAGTC-CTGAATACTCTAAGGAATCGAAGTTAT
1 GAATGTTTG-AAAATTGGTCG-AAGGAATGGATCGTCTCTGAATACTCTCAGGAACCGAAGTTAT
* * * * * *
18183694 AAAAGAACTCGTAAATGTTTGACAAGTTCGAAATTTCGTCCAACAACTAAGAGAGAAACAATTCT
64 AAAAGAACTCTTAAATGTTTGACAAGATCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * * *
18183759 AATGTAAATACGTTTTAAATTCAAATG-CCAAAAG-TTGTTTA-AAAAATGACAACCTATTTAGA
129 CACGTAAATAAGTTTTTAATTCAAA-GACCAAAAGTTTTTTTACAAAAA-GACAAACTATTTAGA
* * * * * * *
18183821 CCAAATTATGCAATTTCTCGAGCATGCAATGATCGAAAAATTGCTCAAAGGAGTGGATCATCCTT
192 CCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGGTCGAAGGA-TGGATCAT-CTT
* * * * *
18183886 AAATACTTTAAGGAA-TCAAAGTTATAAAAGAACTCATAAAAGTTTGACATA-TTTGGAAGTTCG
255 GAATACTTTAA-GAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACA-AGTTCGAAAGTTCG
* * * * * *
18183949 TCCAAGAACCCACAAAAAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTAT
317 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * ** * * *
18184014 TTACAAAATAACAAACAATCGA-ACCAAATGATGCGATTTCCCCAGCACG
382 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATG
* *
18184063 AAAT-TTTCAGAAAATTGGTCAAAGGAATGGATCGTC-CTGAATACTCTCAGGAACCGAAGTTAT
1 GAATGTTT--GAAAATTGGTCGAAGGAATGGATCGTCTCTGAATACTCTCAGGAACCGAAGTTAT
18184126 AAAAGAACTC
64 AAAAGAACTC
18184136 AAAATAATCA
Statistics
Matches: 1551, Mismatches: 195, Indels: 101
0.84 0.11 0.05
Matches are distributed among these distances:
425 86 0.06
426 163 0.11
427 34 0.02
428 73 0.05
429 7 0.00
430 12 0.01
431 174 0.11
432 306 0.20
433 655 0.42
434 41 0.03
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (431 bp):
GAATGTTTGAAAATTGGTCGAAGGAATGGATCGTCTCTGAATACTCTCAGGAACCGAAGTTATAA
AAGAACTCTTAAATGTTTGACAAGATCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTTACAAAAAGACAAACTATTTAGACCAA
ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGGTCGAAGGATGGATCATCTTGAATAC
TTTAAGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAAC
CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATG
Found at i:18187634 original size:216 final size:217
Alignment explanation
Indices: 18186995--18188272 Score: 1326
Period size: 216 Copynumber: 6.0 Consensus size: 217
18186985 TTTCGTATCA
*
18186995 TTTTAATTCAAAGACC-AAAG-TAGTTTACAAAATGAAAAACAATTT-GACCAAATGATGCGATT
1 TTTTAATTCAAAGACCAAAAGTTA-TTTACAAAATGACAAACAATTTAGACCAAATGATGCGATT
* * * *
18187057 TCTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAGTGGATCGTCCTGAATACTCTT-AGGAA
65 TCTCGAGCATGGAATGTTAGGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAA
* * *
18187121 TCGAAGTTATAAAAGAAC-C-TGTAAATGTTTGACAAGTTCAAAACTTCATCCAAGAACCAAGAG
129 TCGAAGTTATAAAAGAACTCAT-TAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC-A-AG
18187184 AGAGAAACAATTCTCACATAAATAAGT
191 AGAGAAACAATTCTCACATAAATAAGT
* * *
18187211 TTTTAATTCAAA-ACCAAAAAAGTTTTTTACAAAATGACAAACTATTTAGACCTAATGATGC-AT
1 TTTTAATTCAAAGACC--AAAAGTTATTTACAAAATGACAAACAATTTAGACCAAATGATGCGA-
* * * ** * ** * *
18187274 TTTCTCGAGTATGGAATATTCGGAAAATTACTCAAAGGAATTCATCATCTTTGAATACTTAAAGG
63 TTTCTCGAGCATGGAATGTTAGGAAAATTGGTCGAAGGAATGGATCGTC-TTGAATACTTTAAGG
* *
18187339 AATCGTAGTTATAAAAGAACTCA-TAAAAGTTTGAC----T----AGTTCGTCCAAGAACCAAGA
127 AATCGAAGTTATAAAAGAACTCATTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
*
18187395 GAGAAACAATTCTCACGTAAATAAGTT
192 GAGAAACAATTCTCACATAAATAAG-T
* * ** * *
18187422 TTTTAATTCAAAGGCCAAAACTTATTTTTAAAATGACAAACAATTT-CACCAAATGATGCAATTT
1 TTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACAATTTAGACCAAATGATGCGATTT
* ** * *
18187486 CTCGAGCATGGAATGGTAGGAAAATTCATCGAAGCAATGGATCGTCTTGAATACTTTAAGGAACC
66 CTCGAGCATGGAATGTTAGGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC
* * * *
18187551 AAAGTTATAAAAGAACTCATTAAA-GTTTGGCAAGTTTGAAAGTTCGTCCAAGAACCAAGAGGGA
131 GAAGTTATAAAAGAACTCATTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
18187615 AACAATTCTCACATAAATAAGT
196 AACAATTCTCACATAAATAAGT
** * * * * *
18187637 TTTTAATTCATCGACTAACAGTTGTTTACAAAATGACAAACAATTT-GATCAAATGATGTGATTT
1 TTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACAATTTAGACCAAATGATGCGATTT
* * * * * * * * * *
18187701 CCCTAGCATGCAATTTTCGAAAAATTGGTCAAAGGAATGGATAGTCCTGAATACTCTCAA-GAAT
66 CTCGAGCATGGAATGTTAGGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAAT
* * * * *
18187765 CGAAGTTATAAAAGAACTC-GTAAATGTTTGACAAGTTCGAAATTTCATCCAACAACTAAGAGAG
130 CGAAGTTATAAAAGAACTCATTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
* * *
18187829 AAACAATTCTAACGTAAATATGT
195 AAACAATTCTCACATAAATAAGT
* * * * * ** * *
18187852 TTTAAATTAAAAGACCAAAAGTTGTTTACAAAATAATAAACTTTTTAGACCAAATGGTTCGATTT
1 TTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACAATTTAGACCAAATGATGCGATTT
* * * ** * *
18187917 CTTGAGCATGCAATGTTCA-GAAAATTGGTCGAAGGAATGGATCATCTTG-ATACCCTCATGAAT
66 CTCGAGCATGGAATGTT-AGGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
18187980 CGAAGTTATAAAAGAACTCGA--AAATGTTTTGACAAGTTC-AGAAGTTCGTCCAAGAACCCAA-
130 CGAAGTTATAAAAGAACTC-ATTAAATG-TTTGACAAGTTCGA-AAGTTCGTCCAAGAA-CCAAG
18188041 AGAGAAACAATTCTCACATAAATAAGT
191 AGAGAAACAATTCTCACATAAATAAGT
* **
18188068 TTTTAATTCAATGACCAAAAG-TAGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
1 TTTTAATTCAAAGACCAAAAGTTA-TTTACAAAATGACAAACAATTTAGACCAAATGATGCGATT
* *
18188132 TC-CTGAGCATGGAATGTTTA-GAAAATCGGTCGAAGGAATGGATCGTCTTGAACACTTTAAGGA
65 TCTC-GAGCATGGAATG-TTAGGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * * * *
18188195 ACCAAATTTATAAAAGAACT-AGTAAATGTTTGACAAGTTCGAAAGTTCGTCCATGAA-AAAGGG
128 ATCGAAGTTATAAAAGAACTCATTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAG
18188258 AGAAACAATTCTCAC
193 AGAAACAATTCTCAC
18188273 GTTTTTAAGG
Statistics
Matches: 877, Mismatches: 145, Indels: 81
0.80 0.13 0.07
Matches are distributed among these distances:
208 40 0.05
209 53 0.06
210 53 0.06
211 14 0.02
212 17 0.02
214 7 0.01
215 257 0.29
216 281 0.32
217 35 0.04
218 25 0.03
219 53 0.06
220 41 0.05
221 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (217 bp):
TTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACAATTTAGACCAAATGATGCGATTT
CTCGAGCATGGAATGTTAGGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC
GAAGTTATAAAAGAACTCATTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
AACAATTCTCACATAAATAAGT
Found at i:18187942 original size:431 final size:425
Alignment explanation
Indices: 18186995--18188274 Score: 1378
Period size: 431 Copynumber: 3.0 Consensus size: 425
18186985 TTTCGTATCA
*
18186995 TTTTAATTCAAAGACC-AAAGTAGTTTACAAAATGAAAAACAATTTGACCAAATGATGCGATTTC
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-AAAAACAATTTGACCAAATGATGCGATTTC
* *
18187059 TCGAGCATGGAATGTTC-GAAAAATTGGTCGAAGGAGTGGATCGTCCTGAATACTCTTAGGAATC
65 TCGAGCATGGAATGTTCAG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAGGAATC
* * *
18187123 GAAGTTATAAAAGAAC-C-TGTAAATGTTTGACAAGTTCAAAACTTCATCCAAGAACCAAGAGAG
128 GAAGTTATAAAAGAACTCAT-TAAATGTTTGACAAGTTTAAAAGTTCGTCCAAGAACCAAGAG-G
** *
18187186 AGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAACCAAAAAAGTTTTTTACAAAATGACAA
191 -GAAACAATTCTCACATAAATAAGTTTTTAATTCATGA-C-AAAAAGTTGTTTACAAAATGACAA
* * * * * * ** *
18187251 ACTATTTAGACCTAATGATGCATTTTCTCGAGTATGGAATATTCGGAAAATTACTCAAAGGAATT
253 ACTATTTAGACCAAATGATGGA-TTTCCCTAGCATGGAATTTTC-GAAAATTGGTCAAAGGAATG
* * * * *
18187316 CATCA-TCTTTGAATACTTAAAGGAATCGTAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTC
316 GAT-AGTC-TTGAATACTTAAAGGAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTC
*
18187380 G------TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
379 GAAATTCTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-T
* * * ** * * *
18187422 TTTTAATTCAAAGGCCAAAACTTATTTTTAAAATGACAAACAATTTCACCAAATGATGCAATTTC
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-AAAAACAATTTGACCAAATGATGCGATTTC
* ** * *
18187487 TCGAGCATGGAATGGT-AGGAAAATTCATCGAAGCAATGGATCGTCTTGAATACTTTAAGGAACC
65 TCGAGCATGGAATGTTCA-GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTT-AGGAATC
* * *
18187551 AAAGTTATAAAAGAACTCATTAAA-GTTTGGCAAGTTTGAAAGTTCGTCCAAGAACCAAGAGGGA
128 GAAGTTATAAAAGAACTCATTAAATGTTTGACAAGTTTAAAAGTTCGTCCAAGAACCAAGAGGGA
* * *
18187615 AACAATTCTCACATAAATAAGTTTTTAATTCATCGACTAACAGTTGTTTACAAAATGACAAACAA
193 AACAATTCTCACATAAATAAGTTTTTAATTCAT-GACAAAAAGTTGTTTACAAAATGACAAACTA
* *
18187680 TTT-GATCAAATGATGTGATTTCCCTAGCATGCAATTTTCGAAAAATTGGTCAAAGGAATGGATA
257 TTTAGACCAAATGATG-GATTTCCCTAGCATGGAATTTTCG-AAAATTGGTCAAAGGAATGGATA
* *
18187744 GTCCTGAATACTCTCAA-GAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGAAAT
320 GTCTTGAATACT-TAAAGGAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGAAA-
* * * *
18187808 TTCATCCAACAACTAAGAGAGAAACAATTCTAACGTAAATATGT
383 TTC-TCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
* * ** * *
18187852 TTTAAATTAAAAGACCAAAAGTTGTTTACAAAATAATAAACTTTTTAGACCAAATGGTTCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAA-AAACAATTT-GACCAAATGATGCGATTT
* * * * * *
18187917 CTTGAGCATGCAATGTTCAGAAAATTGGTCGAAGGAATGGATCATCTTG-ATACCCTCATGAATC
64 CTCGAGCATGGAATGTTCAGAAAATTGGTCGAAGGAATGGATCGTCTTGAATA-CTTTAGGAATC
* *
18187981 GAAGTTATAAAAGAACTCGA--AAATGTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCCAA-AG
128 GAAGTTATAAAAGAACTC-ATTAAATG-TTTGACAAGTTTAAAAGTTCGTCCAAGAA-CCAAGAG
* * *
18188043 AGAAACAATTCTCACATAAATAAGTTTTTAATTCAATGACCAAAAGTAGTTTACAAAATGACAAA
190 GGAAACAATTCTCACATAAATAAGTTTTTAATTC-ATGACAAAAAGTTGTTTACAAAATGACAAA
* * * *
18188108 CTTTTTAGACCAAATGATGCGATTT-CCTGAGCATGGAATGTTTAGAAAATCGGTCGAAGGAATG
254 CTATTTAGACCAAATGATG-GATTTCCCT-AGCATGGAAT-TTTCGAAAATTGGTCAAAGGAATG
* * * * * * *
18188172 GATCGTCTTGAACACTTTAAGGAACCAAATTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGA
316 GATAGTCTTGAATACTTAAAGGAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGA
* *
18188237 AAGTTCGTCCATGAA-AAAGGGAGAAACAATTCTCACGT
381 AA-TTC-TCCAAGAACAAAGAGAGAAACAATTCTCACGT
18188275 TTTTAAGGGA
Statistics
Matches: 714, Mismatches: 107, Indels: 60
0.81 0.12 0.07
Matches are distributed among these distances:
423 49 0.07
424 49 0.07
425 28 0.04
426 35 0.05
427 19 0.03
428 138 0.19
429 10 0.01
430 62 0.09
431 207 0.29
432 113 0.16
433 4 0.01
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (425 bp):
TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAACAATTTGACCAAATGATGCGATTTCT
CGAGCATGGAATGTTCAGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAGGAATCGAA
GTTATAAAAGAACTCATTAAATGTTTGACAAGTTTAAAAGTTCGTCCAAGAACCAAGAGGGAAAC
AATTCTCACATAAATAAGTTTTTAATTCATGACAAAAAGTTGTTTACAAAATGACAAACTATTTA
GACCAAATGATGGATTTCCCTAGCATGGAATTTTCGAAAATTGGTCAAAGGAATGGATAGTCTTG
AATACTTAAAGGAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGAAATTCTCCAA
GAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
Found at i:18190378 original size:216 final size:216
Alignment explanation
Indices: 18188284--18190950 Score: 2678
Period size: 216 Copynumber: 12.4 Consensus size: 216
18188274 TTTTTAAGGG
* * * * * *
18188284 AGACCAAATGATGCAATTTCACGTGCATGGAATGATCG-AAAATTGCTAAAACGAATGGATCGTC
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * * * *
18188348 TTTAAATACTTTAAGGAATCGGAA-CTATAAAAGAACTCATAAAAGTTTAACTAGTTCTCGTAAC
66 -TTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCATAAAAGTTTGACAAG-T-TCGGAAG
* *
18188412 TTCGTCCAAGAACCAAGAG-GAAAACAATTCTCACGTAAATAAGTTTTTTTATTCAAAGATCAAA
127 TTCGTCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAA
*
18188476 AGTTGTTTAAAAAATGAC-AACCTATTT
190 AGTTGTTTAAAAAATGACAAACAT-TTT
* * * * * * *
18188503 AGACCAAATGATGCAATTTCACGTGCATGGAATTAT-G--AAATTGCTAAAACGAATGGATCGTT
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGAAAAATTGGTCAAAGGAATGGATCG-T
* * * * * *
18188565 TTTAAATACTTTAAGGAA-CCAGAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTCGTAACTT
65 CTTGAATACTTTAAGGAATCGA-AGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTT
* ** * *
18188629 CGTCCAAGAACCAAGAGGGAAACAATTCTCATATAAATAAGTTTTTTATTCAAAGATCAAAAGTT
129 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
18188694 GTTTAAAAAATGAC-AACATATTT
194 GTTTAAAAAATGACAAACAT-TTT
** * * * * *
18188717 AGACCAAATGATGTAATTTCCCGAGCATGAAATGATCGGAAAATTGCTCAAAGGAATGGATCATC
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGAAAAATTGGTCAAAGGAATGGATCGT-
* * *
18188782 CTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCATAAAAGTTTGACATGTTCTGAAGTTC
65 CTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTC
* * * * * * *
18188847 GTCCAAGATCCCACAAAAAAATAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
130 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * *
18188912 TTTACAAAATGAAAAACAATTT
195 TTTAAAAAATGACAAACATTTT
*
18188934 -GA-CAAATTGATGCGATTTCTCGAGCATGGAATGATCGAAAAATTTGTCAAAGGAATGGATCGT
1 AGACCAAA-TGATGCGATTTCTCGAGCATGGAATGATCGAAAAATTGGTCAAAGGAATGGATCGT
* * * * * * * *
18188997 CCTGAATACTCTCAA-GAA-CTGAAGTTATAAAAG-ATTCTGTAAATGCTTGACAAGTTCGAAAC
65 CTTGAATACT-TTAAGGAATC-GAAGTTATAAAAGAACTC-ATAAAAGTTTGACAAGTTCGGAAG
* *
18189059 TTCGTCTAGGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-ACCAAAAA
127 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC--AAA
* *
18189123 AGTTTTTTAAGAAATGACAAAC-TATTT
190 AGTTGTTTAAAAAATGACAAACAT-TTT
* * **
18189150 AGACCTAATGATGCGATTTCCCGAGCATGGAAT-ATTC-AAAAATTTACTCAAAGGAATGGATCG
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGA-TCGAAAAA-TTGGTCAAAGGAATGGATCG
* ** *
18189213 TCTTTGAATACTTAAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACTGGTTCGTAAGT
64 TC-TTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGT
* * * * *
18189278 TCGTCCAAGAACCAGGAGAGAAACAATTCTCACATAACTAAGTTTTTAATTTAAAGGCCAAAAGT
128 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* ** * *
18189343 TATTT-TCAAACGACAAACTTTTT
193 TGTTTAAAAAATGACAAACATTTT
* * * * * * *
18189366 AGGCCAAATGATGAGATTT-TCCGAGCATGGAATGTTAGGAAAATTCGTCGAAGGAATGGATCGT
1 AGACCAAATGATGCGATTTCT-CGAGCATGGAATGATCGAAAAATTGGTCAAAGGAATGGATCGT
* * * * *
18189430 CTTGAACACTTTAAGGAATCAAATTTATAAAAGAACT-AGTAAATGTTTGACAAGTTCAGAAGTT
65 CTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCA-TAAAAGTTTGACAAGTTCGGAAGTT
* *
18189494 CATCCAAGAACCCAA-AGAGAAACAATTCTCACATAAATAAGTTTTTAATTC-AA-A-C------
129 CGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* *
18189549 TATTTACAAAATGACAAAC-TATTT
193 TGTTTAAAAAATGACAAACAT-TTT
* * * * * * * *
18189573 ACACCAAATGATACGATTTCACGTGCATGGAATTATC---AAATTGCTAAAACGAATGGATCGTT
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGAAAAATTGGTCAAAGGAATGGATCG-T
* * * * * *
18189635 TTTAAATACTTTAAGGAA-CCAGAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTCGTAACTT
65 CTTGAATACTTTAAGGAATCGA-AGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTT
* * * * *
18189699 CGTCCAATAACCAAGAGGGAAACAATTCTCACATAAATAAGTTTTTTATTCAAAGATCAAAAGTT
129 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
18189764 GTTTAAAAAATGAC-AACATATTT
194 GTTTAAAAAATGACAAACAT-TTT
** * * * * *
18189787 AGACCAAATGATGTAATTTCCCGAGCATGAAATGATCGGAAAATTGCTCAAAGGAATGGATCATC
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGAAAAATTGGTCAAAGGAATGGATCGT-
* *
18189852 CTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCATAAAAGTTTGACATGTTCGGAAGTTC
65 CTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTC
* * * * * * * *
18189917 GTCCAAGATCCCACAAAAAAATAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAATTG
130 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * *
18189982 TTTACAAAAA-AACAAACAATCT
195 TTTA-AAAAATGACAAACATTTT
* * * ** *
18190004 -GACCAAATGATGGGATTTCCCCAGCATGGAATTTTC-AGAAAATTGGTCAAAAGAATGGATCGT
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGA-AAAATTGGTCAAAGGAATGGATCGT
* * * * *
18190067 CCTGAATACTCTCAA-GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTT
65 CTTGAATACT-TTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTT
* *
18190131 CGTCCAAGAGCCAAGAGAGAAACAATTCTCACGTAAATAAGTTTCTAATTCAAAGACCAAAAGTT
129 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
18190196 GTTTAAAAAATGACAAACATTTT
194 GTTTAAAAAATGACAAACATTTT
* * * ** *
18190219 AGACCAAATGATGCGATTTCTTGAGCACGGAATGCTCGAAAAATTGGTTGAAGGAACGGATCGTC
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * * * * *
18190284 ATGAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGTAAATGTTTAACTAGTTCGGAAGTTCG
66 TTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCG
* * * *
18190349 TACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAACTCAAAGACAAAAAGTTAT
131 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* **
18190414 TTACAAAAA-G--ATAGTTTTT
196 TTA-AAAAATGACAAACATTTT
* * * * * * * * * *
18190433 AGACCAAATGTTACAATTTCTCGAGCACT-AAATGTTCGGAATATTAGTCGAAGGAATGGATCAT
1 AGACCAAATGATGCGATTTCTCGAGCA-TGGAATGATCGAAAAATTGGTCAAAGGAATGGATCGT
* * * * ** *
18190497 CTTGAATACTATCAGGAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAAAAGTTT
65 CTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTC
*
18190562 GTCCATGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
130 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* *
18190627 TTTACAAAATGACAAACTTTTT
195 TTTAAAAAATGACAAACATTTT
* * * * * *
18190649 AGACCAAATGATGCGATTTCTCGAGTACGGAATGTTCGGAATATTGGT-AGAGGGAATGGATCGT
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGAAAAATTGGTCA-AAGGAATGGATCGT
* * * * * * * * *
18190713 CTCGAATACTCTCAGGCACCGAATTTATAAAAGAACCCTTAAATA-TTTGACAAGATC-GACAGT
65 CTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAA-AGTTTGACAAGTTCGGA-AGT
* *
18190776 TCGTCCAAGAACTAAGAGAGAATCAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
128 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * *
18190841 AGTTTACAAAATGACAAACAATTT
193 TGTTTAAAAAATGACAAACATTTT
* * * * *
18190865 -GACCAAATGATGCGATTTCTCGAGCATAGAATGTTCGAAAAATTGGTCGAAGGAGTGGATCATC
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGAAAAATTGGTCAAAGGAATGGATCGTC
* * *
18190929 CTGAATACTCTCAGGAATCGAA
66 TTGAATACTTTAAGGAATCGAA
18190951 ATAAGTTCGT
Statistics
Matches: 2064, Mismatches: 312, Indels: 148
0.82 0.12 0.06
Matches are distributed among these distances:
204 24 0.01
205 92 0.04
206 9 0.00
207 41 0.02
208 1 0.00
212 1 0.00
213 7 0.00
214 318 0.15
215 432 0.21
216 567 0.27
217 418 0.20
218 113 0.05
219 41 0.02
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
AGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGAAAAATTGGTCAAAGGAATGGATCGTC
TTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCG
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
TTAAAAAATGACAAACATTTT
Found at i:18190595 original size:430 final size:431
Alignment explanation
Indices: 18188284--18190950 Score: 2682
Period size: 430 Copynumber: 6.2 Consensus size: 431
18188274 TTTTTAAGGG
* * * * * * * *
18188284 AGACCAAATGATGCAATTTCACGTGCATGGAATGATC-GAAAATTGCTAAAACGAATGGATCGTC
1 AGACCAAATGATGCGATTTCCCGAGCATGAAATGTTCGGAAAATTG-TCAAAGGAATGGATCATC
* * * * * * *
18188348 TTTAAATACTTTAAGGAATCGGAA-CTATAAAAGAACTCATAAAAGTTTAACTAGTTCTCGTAAC
65 -TTGAATACTCTAAGGAATC-GAAGTTATAAAAGAACTCATAAAAGTTTGACAAG-T-TCGAAAG
* *
18188412 TTCGTCCAAGAACCAAGAG-GAAAACAATTCTCACGTAAATAAGTTTTTTTATTCAAAGATCAAA
126 TTCGTCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAA
* * * * *
18188476 AGTTGTTTAAAAAATGAC-AACCTATTTAGACCAAATGATGCAATTTCACGTGCATGGAATTAT-
189 AGTTGTTTAAAAAATGACAAACAT-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGATC
* * * * * * *
18188539 -G-AAATTGCTAAAACGAATGGATCGTTTTTAAATACTTTAAGGAA-CCAGAGTTATAAAAGAAC
253 GGAAAATTGGTCAAAGGAATGGATCG-TCTTGAATACTCTAAGGAATCGA-AGTTATAAAAGAAC
* * * * * * **
18188601 TCATAAAAGTTTGACTAGTTCGTAACTTCGTCCAAGAACCAAGAGGGAAACAATTCTCATATAAA
316 TCGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * * *
18188666 TAAGTTTTTTATTCAAAGATC-AAAAGTTGTTTAAAAAATGAC-AACATATTT
381 TAAGTTTTTAATTCAAAGACCAAAAAGTTATTTACAAAA-GACAAAC-TATTT
** *
18188717 AGACCAAATGATGTAATTTCCCGAGCATGAAATGATCGGAAAATTGCTCAAAGGAATGGATCATC
1 AGACCAAATGATGCGATTTCCCGAGCATGAAATGTTCGGAAAATTG-TCAAAGGAATGGATCAT-
* * *
18188782 CTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCATAAAAGTTTGACATGTTCTG-AAGTT
64 CTTGAATACTCTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTC-GAAAGTT
* * * * * * *
18188846 CGTCCAAGATCCCACAAAAAAATAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
128 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * * *
18188911 GTTTACAAAATGAAAAACAATTT-GA-CAAATTGATGCGATTTCTCGAGCATGGAATGATCGAAA
193 GTTTAAAAAATGACAAACATTTTAGACCAAA-TGATGCGATTTCTCGAGCATGGAATGATCGGAA
* * *
18188974 AATTTGTCAAAGGAATGGATCGTCCTGAATACTCTCAA-GAA-CTGAAGTTATAAAAG-ATTCTG
257 AATTGGTCAAAGGAATGGATCGTCTTGAATACTCT-AAGGAATC-GAAGTTATAAAAGAACTC-G
* * * * *
18189036 TAAATGCTTGACAAGTTCGAAACTTCGTCTAGGAACCAAGAGAGAAACAATTCTCACGTAAATAA
319 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
*
18189101 GTTTTTAATTCAAA-ACCAAAAAAGTTTTTTA-AGAAATGACAAACTATTT
384 GTTTTTAATTCAAAGACC-AAAAAGTTATTTACA-AAA-GACAAACTATTT
* * * * * *
18189150 AGACCTAATGATGCGATTTCCCGAGCATGGAATATTC-AAAAATTTACTCAAAGGAATGGATCGT
1 AGACCAAATGATGCGATTTCCCGAGCATGAAATGTTCGGAAAA-TT-GTCAAAGGAATGGATCAT
** *
18189214 CTTTGAATACT-TAAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACTGGTTCGTAAGT
64 C-TTGAATACTCT-AAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGT
* * * * *
18189278 TCGTCCAAGAACCAGGAGAGAAACAATTCTCACATAACTAAGTTTTTAATTTAAAGGCCAAAAGT
127 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* ** * * * * * *
18189343 TATTT-TCAAACGACAAACTTTTTAGGCCAAATGATGAGATTT-TCCGAGCATGGAATGTTAGGA
192 TGTTTAAAAAATGACAAACATTTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATGATCGGA
* * * * * * *
18189406 AAATTCGTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAATCAAATTTATAAAAGAACTAGTA
256 AAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATAAAAGAACTCGTA
* * *
18189471 AATGTTTGACAAGTTCAGAAGTTCATCCAAGAACCCAA-AGAGAAACAATTCTCACATAAATAAG
321 AATGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAG
18189535 TTTTTAATTC-AA-A-C-------TATTTACAAAATGACAAACTATTT
385 TTTTTAATTCAAAGACCAAAAAGTTATTTACAAAA-GACAAACTATTT
* * * * * * * *
18189573 ACACCAAATGATACGATTTCACGTGCATGGAAT-TATC---AAATTGCTAAAACGAATGGATCGT
1 AGACCAAATGATGCGATTTCCCGAGCATGAAATGT-TCGGAAAATTG-TCAAAGGAATGGATC-A
* * * * * * *
18189634 TTTTAAATACTTTAAGGAA-CCAGAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTCGTAACT
63 TCTTGAATACTCTAAGGAATCGA-AGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGT
* * * * *
18189698 TCGTCCAATAACCAAGAGGGAAACAATTCTCACATAAATAAGTTTTTTATTCAAAGATCAAAAGT
127 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
** * *
18189763 TGTTTAAAAAATGAC-AACATATTTAGACCAAATGATGTAATTTCCCGAGCATGAAATGATCGGA
192 TGTTTAAAAAATGACAAACAT-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGGA
* * * * *
18189827 AAATTGCTCAAAGGAATGGATCATCCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCAT
256 AAATTGGTCAAAGGAATGGATCGT-CTTGAATACTCTAAGGAATCGAAGTTATAAAAGAACTCGT
* * * * * * * * *
18189892 AAAAGTTTGACATGTTCGGAAGTTCGTCCAAGATCCCACAAAAAAATAATTCTCATGTAAATAAG
320 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
18189957 TTTTTAATTCAAAGACCAAAAA-TTGTTTACAAAAAAACAAACAATCT
385 TTTTTAATTCAAAGACCAAAAAGTTATTTAC-AAAAGACAAACTATTT
* * * * * * *
18190004 -GACCAAATGATGGGATTTCCCCAGCATGGAATTTTCAGAAAATTGGTCAAAAGAATGGATCGTC
1 AGACCAAATGATGCGATTTCCCGAGCATGAAATGTTCGGAAAATT-GTCAAAGGAATGGATCATC
* * *
18190068 CTGAATACTCTCAA-GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC
65 TTGAATACTCT-AAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTC
* *
18190132 GTCCAAGAGCCAAGAGAGAAACAATTCTCACGTAAATAAGTTTCTAATTCAAAGACCAAAAGTTG
129 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * *
18190197 TTTAAAAAATGACAAACATTTTAGACCAAATGATGCGATTTCTTGAGCACGGAATGCTCGAAAAA
194 TTTAAAAAATGACAAACATTTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGGAAAA
** * * *
18190262 TTGGTTGAAGGAACGGATCGTCATGAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGTAAAT
259 TTGGTCAAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATAAAAGAACTCGTAAAT
* * *
18190327 GTTTAACTAGTTCGGAAGTTCGTACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
324 GTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
18190392 TAACTCAAAGA-CAAAAAGTTATTTACAAAA-AGATAGTTTTT
389 TAATTCAAAGACCAAAAAGTTATTTACAAAAGACAAACTATTT
* * * * * *
18190433 AGACCAAATGTTACAATTTCTCGAGCACT-AAATGTTCGGAATATTAGTCGAAGGAATGGATCAT
1 AGACCAAATGATGCGATTTCCCGAGCA-TGAAATGTTCGGAAAATT-GTCAAAGGAATGGATCAT
* * * * * *
18190497 CTTGAATACTATCAGGAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAAAAGTTT
64 CTTGAATACTCTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTC
*
18190562 GTCCATGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
129 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * * * *
18190627 TTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCTCGAGTACGGAATGTTCGGAATA
194 TTTAAAAAATGACAAACATTTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGGAAAA
* * * * * * * *
18190692 TTGGT-AGAGGGAATGGATCGTCTCGAATACTCTCAGGCACCGAATTTATAAAAGAACCCTTAAA
259 TTGGTCA-AAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATAAAAGAACTCGTAAA
* * * *
18190756 TATTTGACAAGATC-GACAGTTCGTCCAAGAACTAAGAGAGAATCAATTCTCACGTAAATAAGTT
323 TGTTTGACAAGTTCGGA-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
18190820 TTTAATTCAAAGACC-AAAAG-TAGTTTACAAAATGACAAACAATTT
387 TTTAATTCAAAGACCAAAAAGTTA-TTTACAAAA-GACAAACTATTT
* * * *
18190865 -GACCAAATGATGCGATTTCTCGAGCAT-AGAATGTTCGAAAAATTGGTCGAAGGAGTGGATCAT
1 AGACCAAATGATGCGATTTCCCGAGCATGA-AATGTTCGGAAAATT-GTCAAAGGAATGGATCAT
* *
18190928 CCTGAATACTCTCAGGAATCGAA
64 CTTGAATACTCTAAGGAATCGAA
18190951 ATAAGTTCGT
Statistics
Matches: 1873, Mismatches: 292, Indels: 140
0.81 0.13 0.06
Matches are distributed among these distances:
419 2 0.00
420 133 0.07
421 69 0.04
422 97 0.05
423 53 0.03
424 2 0.00
425 1 0.00
429 14 0.01
430 422 0.23
431 244 0.13
432 347 0.19
433 406 0.22
434 82 0.04
435 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (431 bp):
AGACCAAATGATGCGATTTCCCGAGCATGAAATGTTCGGAAAATTGTCAAAGGAATGGATCATCT
TGAATACTCTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGT
CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
TAAAAAATGACAAACATTTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGATCGGAAAATT
GGTCAAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATAAAAGAACTCGTAAATGT
TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
ATTCAAAGACCAAAAAGTTATTTACAAAAGACAAACTATTT
Found at i:18191352 original size:51 final size:49
Alignment explanation
Indices: 18191295--18191423 Score: 181
Period size: 48 Copynumber: 2.6 Consensus size: 49
18191285 TATTTATGCT
* *
18191295 TCATTAAGTGCTTTTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAAGTG--TTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACA
*
18191346 TCATTAAGTG-TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTACA
1 TCATTAAGTGTTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACA
* *
18191394 TTATTAATTG-TTTTGTTTGTTAAATGCATC
1 TCATTAAGTGTTTTTGTTTGTTAAATGCATC
18191424 AGCATCTTTA
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
48 63 0.86
51 10 0.14
ACGTcount: A:0.24, C:0.10, G:0.13, T:0.53
Consensus pattern (49 bp):
TCATTAAGTGTTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACA
Found at i:18191370 original size:48 final size:48
Alignment explanation
Indices: 18191308--18191423 Score: 187
Period size: 48 Copynumber: 2.4 Consensus size: 48
18191298 TTAAGTGCTT
* *
18191308 TTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCATTAAGTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACATCATTAAGTG
* * *
18191356 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTACATTATTAATTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACATCATTAAGTG
18191404 TTTTGTTTGTTAAATGCATC
1 TTTTGTTTGTTAAATGCATC
18191424 AGCATCTTTA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 63 1.00
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.53
Consensus pattern (48 bp):
TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACATCATTAAGTG
Found at i:18196158 original size:48 final size:48
Alignment explanation
Indices: 18196086--18196198 Score: 174
Period size: 48 Copynumber: 2.4 Consensus size: 48
18196076 TTAATGCAAG
* *
18196086 GCATTTAACAAACAAAATAGTTAATAATGCAGATTAC-TAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAGATT-CTTAAACAAAGAT
*
18196134 GCATTTAACAAACAAAACACTTAATGATGCAGATTCTTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAGATTCTTAAACAAAGAT
*
18196182 GCATTTAACAAAAAAAA
1 GCATTTAACAAACAAAA
18196199 AAAACACTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
47 1 0.02
48 59 0.98
ACGTcount: A:0.52, C:0.14, G:0.10, T:0.24
Consensus pattern (48 bp):
GCATTTAACAAACAAAACACTTAATAATGCAGATTCTTAAACAAAGAT
Found at i:18202747 original size:48 final size:48
Alignment explanation
Indices: 18202672--18202793 Score: 201
Period size: 48 Copynumber: 2.6 Consensus size: 48
18202662 TATTTATGCT
*
18202672 TCATTAAGTGTTTT-TTTGTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCATTGTTTAATAATCTGCA
*
18202719 TCATTAAGTGTTTTGTTTGTTAAATGCATCATTGTTTAGTAATCTGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCATTGTTTAATAATCTGCA
* *
18202767 TTATTAACTGTTTTGTTTGTTAAATGC
1 TCATTAAGTGTTTTGTTTGTTAAATGC
18202794 TTTGTTAAAT
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
47 14 0.20
48 56 0.80
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.51
Consensus pattern (48 bp):
TCATTAAGTGTTTTGTTTGTTAAATGCATCATTGTTTAATAATCTGCA
Found at i:18208995 original size:151 final size:151
Alignment explanation
Indices: 18208738--18209041 Score: 608
Period size: 151 Copynumber: 2.0 Consensus size: 151
18208728 GCCAAGCACT
18208738 AGCATTCCCATATCTTTTAATCAAGCTATCATGTTTCCTGAAGCTAAGATGTGGATCCAATTTAT
1 AGCATTCCCATATCTTTTAATCAAGCTATCATGTTTCCTGAAGCTAAGATGTGGATCCAATTTAT
18208803 TTGTACTCATGTGATCTCTGCTTTAAATATTTCTATTGTTAATGCTTTTCGAGTAGTATTGTTAT
66 TTGTACTCATGTGATCTCTGCTTTAAATATTTCTATTGTTAATGCTTTTCGAGTAGTATTGTTAT
18208868 TTGCAATTTTGTAGAAAAAGC
131 TTGCAATTTTGTAGAAAAAGC
18208889 AGCATTCCCATATCTTTTAATCAAGCTATCATGTTTCCTGAAGCTAAGATGTGGATCCAATTTAT
1 AGCATTCCCATATCTTTTAATCAAGCTATCATGTTTCCTGAAGCTAAGATGTGGATCCAATTTAT
18208954 TTGTACTCATGTGATCTCTGCTTTAAATATTTCTATTGTTAATGCTTTTCGAGTAGTATTGTTAT
66 TTGTACTCATGTGATCTCTGCTTTAAATATTTCTATTGTTAATGCTTTTCGAGTAGTATTGTTAT
18209019 TTGCAATTTTGTAGAAAAAGC
131 TTGCAATTTTGTAGAAAAAGC
18209040 AG
1 AG
18209042 GTTTGTATAG
Statistics
Matches: 153, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
151 153 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (151 bp):
AGCATTCCCATATCTTTTAATCAAGCTATCATGTTTCCTGAAGCTAAGATGTGGATCCAATTTAT
TTGTACTCATGTGATCTCTGCTTTAAATATTTCTATTGTTAATGCTTTTCGAGTAGTATTGTTAT
TTGCAATTTTGTAGAAAAAGC
Found at i:18222082 original size:39 final size:39
Alignment explanation
Indices: 18221964--18222062 Score: 189
Period size: 39 Copynumber: 2.5 Consensus size: 39
18221954 TTAAATAGGG
18221964 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
18222003 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
*
18222042 TTTTAATGTGTCTAAGTTTGA
1 TTTTAATGTGTCTTAGTTTGA
18222063 GACAAATTAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.25, C:0.05, G:0.16, T:0.54
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
Found at i:18222144 original size:32 final size:32
Alignment explanation
Indices: 18222108--18222202 Score: 163
Period size: 32 Copynumber: 3.0 Consensus size: 32
18222098 AGCCGAAATT
*
18222108 AATTAGCTGATTAATGTGTTTCATGTACATGC
1 AATTAGCTGATTAATGTGTTTCAGGTACATGC
18222140 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATGTGTTTCAGGTACATGC
* *
18222172 AATTAGCTGATTAATATATTTCAGGTACATG
1 AATTAGCTGATTAATGTGTTTCAGGTACATG
18222203 TATGGATGGC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.39
Consensus pattern (32 bp):
AATTAGCTGATTAATGTGTTTCAGGTACATGC
Found at i:18228334 original size:80 final size:79
Alignment explanation
Indices: 18228193--18228351 Score: 248
Period size: 80 Copynumber: 2.0 Consensus size: 79
18228183 ATATAAGCAC
* * *
18228193 TAATTTCATTTTAACTCTTGTAGGGAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTA-
1 TAATTTCATTTTAACTCTTGTAGGAAAGCCAATAAGTCATGTCTCTTCATTAGGATCTGATGTAG
18228257 CTTGAAAAGGCATGG
66 C-TGAAAAGGCATGG
* *
18228272 TAATTTCGTTTTTAACTCTTGTCGGAAAGCCAATAAGTCATGTCTCTTCATTAGGATCTGATGTA
1 TAATTTC-ATTTTAACTCTTGTAGGAAAGCCAATAAGTCATGTCTCTTCATTAGGATCTGATGTA
18228337 GCTGAAAAGGCATGG
65 GCTGAAAAGGCATGG
18228352 CATTTCTCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
79 7 0.10
80 65 0.89
81 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (79 bp):
TAATTTCATTTTAACTCTTGTAGGAAAGCCAATAAGTCATGTCTCTTCATTAGGATCTGATGTAG
CTGAAAAGGCATGG
Found at i:18239656 original size:31 final size:28
Alignment explanation
Indices: 18239621--18239687 Score: 71
Period size: 31 Copynumber: 2.3 Consensus size: 28
18239611 TTCCTTTTTA
* *
18239621 TCTTTTTTCTTTTCTCTCTTTCTTTTCACTT
1 TCTTTTTTCTTTTCTATC-AT-TTTTC-CTT
**
18239652 TCTTTGCTCTTTTCTATCATTTTTCCTT
1 TCTTTTTTCTTTTCTATCATTTTTCCTT
18239680 TCTTTTTT
1 TCTTTTTT
18239688 TCAATTTTCT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
28 9 0.30
29 5 0.17
30 1 0.03
31 15 0.50
ACGTcount: A:0.04, C:0.24, G:0.01, T:0.70
Consensus pattern (28 bp):
TCTTTTTTCTTTTCTATCATTTTTCCTT
Found at i:18243412 original size:17 final size:17
Alignment explanation
Indices: 18243390--18243423 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18243380 TTGAGAATTG
* *
18243390 CAGATCCCATTTCTTTT
1 CAGATCCAACTTCTTTT
18243407 CAGATCCAACTTCTTTT
1 CAGATCCAACTTCTTTT
18243424 GTAGCTGTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.29, G:0.06, T:0.44
Consensus pattern (17 bp):
CAGATCCAACTTCTTTT
Found at i:18247099 original size:13 final size:12
Alignment explanation
Indices: 18247077--18247106 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
18247067 GAAACAAATG
18247077 AAAATAAAAGTA
1 AAAATAAAAGTA
18247089 AAAAGTAAAAGTA
1 AAAA-TAAAAGTA
18247102 AAAAT
1 AAAAT
18247107 TGCAATGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (12 bp):
AAAATAAAAGTA
Found at i:18254906 original size:268 final size:267
Alignment explanation
Indices: 18254428--18254963 Score: 840
Period size: 268 Copynumber: 2.0 Consensus size: 267
18254418 ATGATAAATG
* * * * *
18254428 TTTGATAGCTGATTAATGGATGTACGATTGAATTATTTAACATTTAAATTTATTTTTCGATAACT
1 TTTGATAGCTGATAAATGGATGTAAGATTAAATTATTTAACATTTAAATTGATTTTTCAATAACT
*** * *
18254493 GTGAGAATTGTGATAATGAGAAGGTGCATGTCTAGGATTGGCTTTGGCTAGGAAAGACTTGGTTT
66 GTGAGAACAATCATAATGAGAAGGTGCATGTCTAGGATTGGCTCTGGCTAGGAAAGACTTGGTTT
* ** *
18254558 TTAAGCAGTCAAATTTGACTCACCTCTCTTTTTTGGGACCCTACCTGGTGCACGGTTCACATTTA
131 TTAAGCAATCAAATTTGACTCACCTCTCTTTCCTGGGACCCTACCTGGTGCACGGTTCACATTCA
* *
18254623 CATCTTCGATTTTTCCCTTAATATCATGTATGATGGTATGTGATTTAAACATTAATATGATTTTT
196 CATCTTCGATTTTTCCCTAAATATCATGTATGATGG--TGTGATTTAAACATTAATATGATTTTG
18254688 TATAACATA
259 TATAACATA
* *
18254697 TTTGATAGTTGATAAATGGATGTAATATTAAATTATTTAACA-TTAAATTGATTTTTCAATAACT
1 TTTGATAGCTGATAAATGGATGTAAGATTAAATTATTTAACATTTAAATTGATTTTTCAATAACT
* *
18254761 GTGAGAACAATCATAATGAGAAGGTGCGTGTCTAGGATTGGCTCTGGCTAGGAAAGGCTTGGTTT
66 GTGAGAACAATCATAATGAGAAGGTGCATGTCTAGGATTGGCTCTGGCTAGGAAAGACTTGGTTT
18254826 TTAAGCAATCAAATTTGACTCACCTCTCTTTCCTGGGACCCTACCTGGTGCACGGTTCACATTCA
131 TTAAGCAATCAAATTTGACTCACCTCTCTTTCCTGGGACCCTACCTGGTGCACGGTTCACATTCA
** *
18254891 CATCTTTTATTTTTCCCTAAATATCGTGTATGATGGTGTGATTTAAACATTAATATGATTTTGTA
196 CATCTTCGATTTTTCCCTAAATATCATGTATGATGGTGTGATTTAAACATTAATATGATTTTGTA
18254956 TAACATA
261 TAACATA
18254963 T
1 T
18254964 AATGAGCATG
Statistics
Matches: 244, Mismatches: 23, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
266 36 0.15
268 171 0.70
269 37 0.15
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (267 bp):
TTTGATAGCTGATAAATGGATGTAAGATTAAATTATTTAACATTTAAATTGATTTTTCAATAACT
GTGAGAACAATCATAATGAGAAGGTGCATGTCTAGGATTGGCTCTGGCTAGGAAAGACTTGGTTT
TTAAGCAATCAAATTTGACTCACCTCTCTTTCCTGGGACCCTACCTGGTGCACGGTTCACATTCA
CATCTTCGATTTTTCCCTAAATATCATGTATGATGGTGTGATTTAAACATTAATATGATTTTGTA
TAACATA
Found at i:18256773 original size:234 final size:234
Alignment explanation
Indices: 18256364--18256827 Score: 777
Period size: 234 Copynumber: 2.0 Consensus size: 234
18256354 TTATTATATA
* *
18256364 ATACGAAACGAATGCAGAAGAGGATCGTAAAGTTGTCAAGTCGCGGATCTACCCTAAAACTCTAG
1 ATACGAAACGAATGCAGAAGAGGATCGTAAAGCTGTCAAGTCACGGATCTACCCTAAAACTCTAG
*
18256429 ACAAATGTAATCAGAAACGAAAACAAAGAAAGACAGATTAGTTGACAAGAAGAATAATCAAACAA
66 ACAAATGTAATCAGAAACGAAAACAAAGAAAGACAGATTAATTGACAAGAAGAATAATCAAACAA
*
18256494 GATTAAAACAAAAGAAAGATGAATGGCTGGTAAAGGATCCAATAGAGAATGAAATTAGGGTTTCT
131 GATTAAAACAAAAGAAAGATAAATGGCTGGTAAAGGATCCAATAGAGAATGAAATTAGGGTTTCT
* * *
18256559 TGGATGAAAGAAACCGTCCTTGGACCTCAAGAAAATGTG
196 TGGATGAAAGAAACCATCCTTGAACCTCAAAAAAATGTG
* ** *
18256598 ATACGAAATGAATGTGGAAGAGGATCGTAAAGCTGTCAAGTCACGGATCTACCCTAAAGCTCTAG
1 ATACGAAACGAATGCAGAAGAGGATCGTAAAGCTGTCAAGTCACGGATCTACCCTAAAACTCTAG
*
18256663 ACAAATGTAATCTGAAACGAAAACAAAGAAAGACAGATTAATTGACAAGAAGAATAATCAAACGA
66 ACAAATGTAATCAGAAACGAAAACAAAGAAAGACAGATTAATTGACAAGAAGAATAATCAAAC-A
* * *
18256728 A-ATTAAAACGAAAGAAAGATAAATGGTTGGTAACGGATCCAATAGAGAATGAAATTAGGGTTTC
130 AGATTAAAACAAAAGAAAGATAAATGGCTGGTAAAGGATCCAATAGAGAATGAAATTAGGGTTTC
18256792 TTGGATGAAAGAAACCATCCTTGAACCTCAAAAAAA
195 TTGGATGAAAGAAACCATCCTTGAACCTCAAAAAAA
18256828 GGTCCCAAGC
Statistics
Matches: 214, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
234 212 0.99
235 2 0.01
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.20
Consensus pattern (234 bp):
ATACGAAACGAATGCAGAAGAGGATCGTAAAGCTGTCAAGTCACGGATCTACCCTAAAACTCTAG
ACAAATGTAATCAGAAACGAAAACAAAGAAAGACAGATTAATTGACAAGAAGAATAATCAAACAA
GATTAAAACAAAAGAAAGATAAATGGCTGGTAAAGGATCCAATAGAGAATGAAATTAGGGTTTCT
TGGATGAAAGAAACCATCCTTGAACCTCAAAAAAATGTG
Found at i:18261647 original size:23 final size:23
Alignment explanation
Indices: 18261604--18261852 Score: 320
Period size: 23 Copynumber: 10.8 Consensus size: 23
18261594 ATTATATCTA
*
18261604 TGCTTAAATATTAATAG-GATTTA
1 TGCTTAAATATTAAT-GTGATTTG
* * *
18261627 CGATTAAATAATAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
18261650 TGCTTAAGTATTAATGTGATTTA
1 TGCTTAAATATTAATGTGATTTG
*
18261673 TGCTTAAATATTAATATGATTTG
1 TGCTTAAATATTAATGTGATTTG
* * *
18261696 TGCTCAAATAGTAATATGATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
18261719 TGCTTAAATAATAATATGATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
18261742 TGCTCAAATATTAATGTGATTTA
1 TGCTTAAATATTAATGTGATTTG
* *
18261765 TGCTTAAATATTAATGTTATTTA
1 TGCTTAAATATTAATGTGATTTG
* *
18261788 TGCTTAAATATTAATTTGATTTT
1 TGCTTAAATATTAATGTGATTTG
18261811 TGCTTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
18261834 TGCTTAAATATTAATGTGA
1 TGCTTAAATATTAATGTGA
18261853 AATTGTGAAA
Statistics
Matches: 198, Mismatches: 27, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
22 1 0.01
23 197 0.99
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.46
Consensus pattern (23 bp):
TGCTTAAATATTAATGTGATTTG
Found at i:18263237 original size:23 final size:23
Alignment explanation
Indices: 18263211--18263461 Score: 304
Period size: 23 Copynumber: 10.9 Consensus size: 23
18263201 TTCTTATATC
*
18263211 TATGCTTAAATATTAATATGATT
1 TATGCTTAAATATTAATGTGATT
* * *
18263234 TATGATTAAATAATAATTTGATT
1 TATGCTTAAATATTAATGTGATT
*
18263257 TATGCTTAAGTATTAATGTGATT
1 TATGCTTAAATATTAATGTGATT
* * *
18263280 TATGCTTGAATATTAATATTATT
1 TATGCTTAAATATTAATGTGATT
* * **
18263303 TGTGCTTAAAAATTAATAAGATT
1 TATGCTTAAATATTAATGTGATT
* *
18263326 TGTGCTCAAATATTAATGTGATT
1 TATGCTTAAATATTAATGTGATT
* *
18263349 TATTCTTAAATATTAATGTTATT
1 TATGCTTAAATATTAATGTGATT
*
18263372 TATGCTTAAATATTAATGTAATT
1 TATGCTTAAATATTAATGTGATT
* *
18263395 TGTGTTTAAATATTAATGTGATT
1 TATGCTTAAATATTAATGTGATT
* *
18263418 TGTGCTTAAATATTAATATGATT
1 TATGCTTAAATATTAATGTGATT
*
18263441 TATGATTAAATATTAATGTGA
1 TATGCTTAAATATTAATGTGA
18263462 CTTGGTTTTT
Statistics
Matches: 194, Mismatches: 34, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 194 1.00
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.48
Consensus pattern (23 bp):
TATGCTTAAATATTAATGTGATT
Found at i:18265034 original size:23 final size:23
Alignment explanation
Indices: 18264999--18265217 Score: 252
Period size: 23 Copynumber: 9.7 Consensus size: 23
18264989 TATATCTATA
18264999 CTTAAATATTAATAG-GATTTATG
1 CTTAAATATTAAT-GTGATTTATG
* * *
18265022 ATTAAATAATAATGTGATTTGTG
1 CTTAAATATTAATGTGATTTATG
18265045 CTTAAATATTAATGTGATTTATG
1 CTTAAATATTAATGTGATTTATG
* *
18265068 CTTAACTATTAATATGA--T-T-
1 CTTAAATATTAATGTGATTTATG
* * *
18265087 CTTAAATATTGATATGATTTGTG
1 CTTAAATATTAATGTGATTTATG
* *
18265110 CTCAATTATTAATGTGATTTATG
1 CTTAAATATTAATGTGATTTATG
* *
18265133 CTTAAATATTAATGTGATTTTTT
1 CTTAAATATTAATGTGATTTATG
*
18265156 CTTAAATATTAAT-TGATTTGTG
1 CTTAAATATTAATGTGATTTATG
*
18265178 CTTAAATATTAATATGATTTATG
1 CTTAAATATTAATGTGATTTATG
*
18265201 GTTAAATATTAATGTGA
1 CTTAAATATTAATGTGA
18265218 AATTGTGAAA
Statistics
Matches: 166, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
19 15 0.09
20 1 0.01
21 2 0.01
22 22 0.13
23 126 0.76
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (23 bp):
CTTAAATATTAATGTGATTTATG
Found at i:18265107 original size:65 final size:65
Alignment explanation
Indices: 18264999--18265213 Score: 261
Period size: 65 Copynumber: 3.2 Consensus size: 65
18264989 TATATCTATA
* * *
18264999 CTTAAATATTAATAGGATTTATGATTAAATAATAATGTGATTTGTGCTTAAATATTAATGTGATT
1 CTTAAATATTAATATGA-TT-T-CTTAAATATTAAT-TGATTTGTGCTTAAATATTAATGTGATT
18265064 TATG
62 TATG
* * * *
18265068 CTTAACTATTAATATGA-TTCTTAAATATTGATATGATTTGTGCTCAATTATTAATGTGATTTAT
1 CTTAAATATTAATATGATTTCTTAAATATTAAT-TGATTTGTGCTTAAATATTAATGTGATTTAT
18265132 G
65 G
* *
18265133 CTTAAATATTAATGTGATTTTTTCTTAAATATTAATTGATTTGTGCTTAAATATTAATATGATTT
1 CTTAAATATTAATATGA---TTTCTTAAATATTAATTGATTTGTGCTTAAATATTAATGTGATTT
18265198 ATG
63 ATG
*
18265201 GTTAAATATTAAT
1 CTTAAATATTAAT
18265214 GTGAAATTGT
Statistics
Matches: 127, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
65 55 0.43
66 1 0.01
67 1 0.01
68 41 0.32
69 29 0.23
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.48
Consensus pattern (65 bp):
CTTAAATATTAATATGATTTCTTAAATATTAATTGATTTGTGCTTAAATATTAATGTGATTTATG
Found at i:18265148 original size:88 final size:90
Alignment explanation
Indices: 18264999--18265217 Score: 291
Period size: 88 Copynumber: 2.4 Consensus size: 90
18264989 TATATCTATA
* * *
18264999 CTTAAATATTAATAGGATTTATGATTAAATAATAATGTGATTTGTGCTTAAATATTAATGTGATT
1 CTTAAATATTAATATGATTTATGATTAAATATTAATGTGATTTATGCTTAAATATTAATGTGATT
*
18265064 TATGCTTAACTATTAATATGA-T-T-
66 TATGCTTAAATATTAAT-TGATTGTG
* * * * *
18265087 CTTAAATATTGATATGATTTGTGCTCAATTATTAATGTGATTTATGCTTAAATATTAATGTGATT
1 CTTAAATATTAATATGATTTATGATTAAATATTAATGTGATTTATGCTTAAATATTAATGTGATT
* *
18265152 TTTTCTTAAATATTAATTGATTTGTG
66 TATGCTTAAATATTAATTGA-TTGTG
*
18265178 CTTAAATATTAATATGATTTATGGTTAAATATTAATGTGA
1 CTTAAATATTAATATGATTTATGATTAAATATTAATGTGA
18265218 AATTGTGAAA
Statistics
Matches: 111, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
87 3 0.03
88 71 0.64
89 1 0.01
90 1 0.01
91 35 0.32
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (90 bp):
CTTAAATATTAATATGATTTATGATTAAATATTAATGTGATTTATGCTTAAATATTAATGTGATT
TATGCTTAAATATTAATTGATTGTG
Found at i:18268853 original size:24 final size:24
Alignment explanation
Indices: 18268823--18268870 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
18268813 GCACAGGTAA
18268823 AAACTAACCCTAGAGTTCTTGAGT
1 AAACTAACCCTAGAGTTCTTGAGT
18268847 AAACTAACCCTAGAGTTCTTGAGT
1 AAACTAACCCTAGAGTTCTTGAGT
18268871 TAGATGCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (24 bp):
AAACTAACCCTAGAGTTCTTGAGT
Found at i:18276651 original size:18 final size:18
Alignment explanation
Indices: 18276628--18276662 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
18276618 GAATATTTTT
18276628 TATTTTT-TATTTTTCTCA
1 TATTTTTCT-TTTTTCTCA
18276646 TATTTTTCTTTTTTCTC
1 TATTTTTCTTTTTTCTC
18276663 GTCTTTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.74
Consensus pattern (18 bp):
TATTTTTCTTTTTTCTCA
Found at i:18279956 original size:181 final size:181
Alignment explanation
Indices: 18279652--18279990 Score: 561
Period size: 181 Copynumber: 1.9 Consensus size: 181
18279642 GTAAACAAGT
18279652 TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
* *
18279717 TTTGAACTTGTCAAACATGTACGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGAT
66 TTTGAACTTGTCAAACATGTACGAGTTCTTTTACAACTTTGGTTCCTAAGAGTATTCAAGACAAT
*
18279782 CCATTCCTTCGACCAATATTCCGAACATTCTGTGCTTGAGAAATCATATCA
131 CCATTCCTTCGACCAATATTCCAAACATTCTGTGCTTGAGAAATCATATCA
* * * * **
18279833 TTTGGTCTTTGAATTAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGATTAACT
1 TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
* * *
18279898 TTTGAACTTGTCAAACATTTACGAGTTCTTTTACAACTTTGGTTCCTGAGAGTATTCAAGATAAT
66 TTTGAACTTGTCAAACATGTACGAGTTCTTTTACAACTTTGGTTCCTAAGAGTATTCAAGACAAT
*
18279963 CCATTCCTTCGACCAATTTTCCAAACAT
131 CCATTCCTTCGACCAATATTCCAAACAT
18279991 CACATGCTCG
Statistics
Matches: 145, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
181 145 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (181 bp):
TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
TTTGAACTTGTCAAACATGTACGAGTTCTTTTACAACTTTGGTTCCTAAGAGTATTCAAGACAAT
CCATTCCTTCGACCAATATTCCAAACATTCTGTGCTTGAGAAATCATATCA
Found at i:18280210 original size:396 final size:396
Alignment explanation
Indices: 18279461--18280235 Score: 1104
Period size: 396 Copynumber: 2.0 Consensus size: 396
18279451 CCGAGAATTG
* * * *
18279461 TTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACTTTCAAATTTGTCAAACATTTATGA
1 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCAAACTTGTCAAACATTTACGA
* *
18279526 GTTCTTTTATAACTTCGGTTACTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCAA
66 GTTCTTTTACAACTTCGGTTACTGAGAGTATTCAAGACAATCCATTCCTTCGACCAATTTTCCAA
* * * * *
18279591 ACATTCCATGCCCAGGAAATCGCTTGATTTGTGCAAAGTGTTTGTCATTTTGTAAACAAGTTTTG
131 ACATTCCATGCCCAGGAAATCACATCATTTGTGCAAAGTGTTTGTCATTTAGTAAACAACTTTTG
**
18279656 GTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTTG
196 GTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTCA
* *
18279721 AACTTGTCAAACATGTACGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGATCCAT
261 AACTTGTCAAACATGTACGAGTTCTATTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCCAT
* *
18279786 TCCTTCGACCAATATTCCGAACATTCTGTGCTTGAGAAATCATATCATTTGGTCTTTGAATTAAA
326 TCCTTCGACCAATATTCCGAAAATTCTGTGCTTAAGAAATCATATCATTTGGTCTTTGAATTAAA
18279851 AACTTA
391 AACTTA
* ** **
18279857 TTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGATTAACTTTTGAACTTGTCAAACATTTACGA
1 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCAAACTTGTCAAACATTTACGA
* * *
18279922 GTTCTTTTACAACTTTGGTTCCTGAGAGTATTCAAGATAATCCATTCCTTCGACCAATTTTCCAA
66 GTTCTTTTACAACTTCGGTTACTGAGAGTATTCAAGACAATCCATTCCTTCGACCAATTTTCCAA
* * * *
18279987 ACA-TCACATGCTCGGGAAATCACATCATTTG-GTCAGATTGTTTGTCATTTAGTAAACAACTTT
131 ACATTC-CATGCCCAGGAAATCACATCATTTGTG-CAAAGTGTTTGTCATTTAGTAAACAACTTT
* * * **
18280050 TGGTCTTTGAATTAAAAAGTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTT
194 TGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTT
* * * * * *
18280115 CAAATTTGTCAAACATTTATGAGTTCTATTATAACTTCGGTTCTTAAGAGTATTTAGGACGATCC
259 CAAACTTGTCAAACATGTACGAGTTCTATTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCC
* * * * * *
18280180 ATTCCTTTGACTATTTTTTCGAAAATTCTGTGCTTAAGAAATCGTATCATTTGGTC
324 ATTCCTTCGACCAATATTCCGAAAATTCTGTGCTTAAGAAATCATATCATTTGGTC
18280236 AAACTATTTG
Statistics
Matches: 331, Mismatches: 46, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
395 3 0.01
396 328 0.99
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (396 bp):
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCAAACTTGTCAAACATTTACGA
GTTCTTTTACAACTTCGGTTACTGAGAGTATTCAAGACAATCCATTCCTTCGACCAATTTTCCAA
ACATTCCATGCCCAGGAAATCACATCATTTGTGCAAAGTGTTTGTCATTTAGTAAACAACTTTTG
GTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTCA
AACTTGTCAAACATGTACGAGTTCTATTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCCAT
TCCTTCGACCAATATTCCGAAAATTCTGTGCTTAAGAAATCATATCATTTGGTCTTTGAATTAAA
AACTTA
Found at i:18280231 original size:215 final size:215
Alignment explanation
Indices: 18279833--18281143 Score: 1356
Period size: 215 Copynumber: 6.1 Consensus size: 215
18279823 AATCATATCA
* **
18279833 TTTGGTCTTTGAATTAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGATTAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * * * **
18279898 TTTGAACTTGTCAAACATTTACGAGTTCTTTTACAACTTTGGTTCCTGAGAGTATTCAAGATAAT
66 TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCTTAAGAGTATTCAAGACGAT
* * *
18279963 CCATTCCTTCGACCAATTTTCCAAACA-TCACATGCTCGGGAAATCACATCATTTGGTCAGATTG
131 CCATTCCTTCGACCAATTTTCCAAACATTC-CATGCTTGGGAAATCGCATCATTTGGTCAAATTG
*
18280027 TTTGTCATTTAGTAAACAACT
195 TTTGTCATTTTGTAAACAACT
* *
18280048 TTTGGTCTTTGAATTAAAAAGTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
18280113 TTCAAATTTGTCAAACATTTATGAGTTCTATTATAACTTCGGTTCTTAAGAGTATTTAGGACGAT
66 TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCTTAAGAGTATTCAAGACGAT
* * * * ** ** * * *
18280178 CCATTCCTTTGACTATTTTTTCGAAA-ATTCTGTGCTTAAGAAATCGTATCATTTGGTCAAACTA
131 CCATTCCTTCGACCA-ATTTTCCAAACATTCCATGCTTGGGAAATCGCATCATTTGGTCAAATTG
* *
18280242 TTTGTCTTTTTGTATACAACT
195 TTTGTCATTTTGTAAACAACT
* * * * * *
18280263 ATTGGTCTATGAACTAAAAACTTATTCATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
18280328 TCCAAACTTGTCAAAC-TTTAATGAGTTCTTTTATAACTTCGGTTCCTTGA-AGTATTCAAGATG
66 TTCAAACTTGTCAAACATTT-ATGAGTTCTTTTATAACTTCGGTT-CTTAAGAGTATTCAAGACG
* * * * * * * *
18280391 TTCTATTCCTTCGACCTATTTCCCGAACATTCCATCCTTAGGAAATCGCATCATTTGGTTAAATT
129 ATCCATTCCTTCGACCAATTTTCCAAACATTCCATGCTTGGGAAATCGCATCATTTGGTCAAATT
*
18280456 GTTTGTTATTTTGTAAACAACCT
194 GTTTGTCATTTTGTAAACAA-CT
* *
18280479 TTT-GTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTT-GTTCTTGGACGAAC-
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * * *
18280541 TTCAAAACTTATCAAAGGTTAATGAGTTCTTTTATAACTTTGATTCCTTAAG-GTATTCATGACG
66 TTC-AAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTT-CTTAAGAGTATTCAAGACG
* * * * *
18280605 ATCCATTCCTTCGACCAATTTTCCAAACATTCCATGCTCGAGAAATTGCATCATTTCGTGAAATT
129 ATCCATTCCTTCGACCAATTTTCCAAACATTCCATGCTTGGGAAATCGCATCATTTGGTCAAATT
*
18280670 ATTTGTCATTTTGTAAACAACT
194 GTTTGTCATTTTGTAAACAACT
* * * *
18280692 TTTGGTCTTTGAATT-AAAACTTATTTATGTGAGAATTATTTCTCTTTTGGTTCTTGGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
18280756 TAT-GAACTAT-TCAAACTTTTATGAGTACTTTTATAACTTGGGTCCTTTA-AGTATTCAAAGAC
66 T-TCAAACT-TGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCTTAAGAGTATTC-AAGAC
* * * * * * *
18280818 GACCCATTCCTTTGAGCAATTTTCCAAACATTTCAAGCTTGGGAAATTGCATCATTAGGTCTAAA
128 GATCCATTCCTTCGACCAATTTTCCAAACATTCCATGCTTGGGAAATCGCATCATTTGGTC-AAA
* *
18280883 TAGTTTGTCATTTTTTCAAA-AACT
192 TTGTTTGTCATTTTGT-AAACAACT
* * *
18280907 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * ** * * *
18280972 TTTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAGATGAT
66 TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCTTAAGAGTATTCAAGACGAT
* * * * * * * *
18281037 ACATTCCATC-AGCCAATATTT-CGAGCATTCCATGATCGAGAAATCGCATCATTAGGTCTAAAT
131 CCATTCCTTCGA-CCAAT-TTTCCAAACATTCCATGCTTGGGAAATCGCATCATTTGGTC-AAAT
* * * *
18281100 AGTTTATAATTTTGTAAACATCT
193 TGTTTGTCATTTTGTAAACAACT
* * *
18281123 TTTTGTTTTTTAATTAAAAAC
1 TTTGGTCTTTGAATTAAAAAC
18281144 CTAATGAACT
Statistics
Matches: 905, Mismatches: 166, Indels: 49
0.81 0.15 0.04
Matches are distributed among these distances:
213 48 0.05
214 250 0.28
215 413 0.46
216 184 0.20
217 10 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCTTAAGAGTATTCAAGACGAT
CCATTCCTTCGACCAATTTTCCAAACATTCCATGCTTGGGAAATCGCATCATTTGGTCAAATTGT
TTGTCATTTTGTAAACAACT
Found at i:18281296 original size:182 final size:182
Alignment explanation
Indices: 18280967--18281299 Score: 440
Period size: 182 Copynumber: 1.8 Consensus size: 182
18280957 GTTCTTAGAC
*
18280967 GAACTTTTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
1 GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
* * *
18281032 ATGATACATTCCATCAGCCAATATTTCGAGCATTCCATGATCGAGAAATCGCATCATTAGGTCTA
66 ATGATACATTCCATCAGCCAATATTTCAAACAGTCCATGATCGAGAAATCGCATCATTAGGTCTA
*
18281097 AATAGTTTATAATTTTGTAAACATCTTTTTGTTTTTTAATTAAAAACCTAAT
131 AAAAGTTTATAATTTTGTAAACATCTTTTTGTTTTTTAATTAAAAACCTAAT
* * * *
18281149 GAACTTCTGAACTTGTCAAATATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAG
1 GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
* * ** * * *
18281214 ATGATCCATTTC-TTTGACCGAT-TTGTCAAACAGTCCAT-AGTCG-GAAATTTGCATCATTTGG
66 ATGATACATTCCATCAG-CCAATATT-TCAAACAGTCCATGA-TCGAGAAA-TCGCATCATTAGG
* *
18281275 TCTAAAAAGTTTCTCATTTTGTAAA
127 TCTAAAAAGTTTATAATTTTGTAAA
18281300 AAACATTTTG
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
181 9 0.07
182 120 0.93
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (182 bp):
GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
ATGATACATTCCATCAGCCAATATTTCAAACAGTCCATGATCGAGAAATCGCATCATTAGGTCTA
AAAAGTTTATAATTTTGTAAACATCTTTTTGTTTTTTAATTAAAAACCTAAT
Found at i:18283664 original size:216 final size:215
Alignment explanation
Indices: 18283205--18283979 Score: 900
Period size: 215 Copynumber: 3.6 Consensus size: 215
18283195 TTTCATATCA
*
18283205 TCTTGCTTCTTGGACGAACTTCCGAACTAGAT-AAACTTTTTATGAGTTCTTTTATAACTTC-GA
1 TCTTGGTTCTTGGACGAACTTCCGAACTAG-TCAAAC-TTTTATGAGTTCTTTTATAACTTCAG-
* * * *
18283268 TTCCTTAAAGTATTCAAGGCTATCCATTCCTTCGACCAATTTTCCGATCATTCCATACTCGAGAA
63 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGAA
* *
18283333 ATTGCATCA-TTGGTCAGATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
128 ATTGTATCATTTGGTCAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
18283397 TATTTACATGAGAATTGTTTTTC
193 TATTTACATGAGAATTGTTTTTC
* * * **
18283420 TCTGGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTGTAACTTTGGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTTC
* * * * *
18283485 CTTAAAGTATTCAAAGACGAT-CAGTTCCTTTGAGCAATTTTTCGATCATTCCATGCTCGGGAAA
66 CTTAAAGTATTC-AAGACGATCCA-TTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAA
* * * * *
18283549 TTGTATCATTTGGTCTAAATAGTTTTTTATTTTTTAAACAACTTTTGGCCTTTGAA-TAAAAACT
129 TTGTATCATTTGGTC-AAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
*
18283613 TATTTACGTGAGAATTGTTTCTT-
193 TATTTACATGAGAATTGTTT-TTC
* * * ** * * * * *
18283636 TCTTGGTTCTAGGATGAACTTTCGAACTTCTCAAACATTTACGTGTTCTTTTAGAACTTTAGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTTC
* * * * * * * **
18283701 CTGAGATTATTCAAGACGCTCCCTTCCTTCGACCAATATTCTGAACATTCTGTGCTC-AGGAAAT
66 CTTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGA-GAAAT
** * * *
18283765 CATATCATTTGGCCAAATTGTTTGCCACTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
130 TGTATCATTTGGTCAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
*
18283830 TTTACATGAGAATTATTTTTC
195 TTTACATGAGAATTGTTTTTC
* * * *
18283851 TCTTGGTTCTTGGACGAAGTTACGAACTAG-CAAAACTTTTATGAGTTCTTATATGACTTCAGTT
1 TCTTGGTTCTTGGACGAACTTCCGAACTAGTC-AAACTTTTATGAGTTCTTTTATAACTTCAGTT
* * * *
18283915 CCTTAAAGTGTTCAAAGACGATCCATTCCTTTGAGCAATTTTCCAAACATTCCATGCTCGAGAAA
65 CCTTAAAGTATTC-AAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAA
18283980 AAGAATATTT
Statistics
Matches: 463, Mismatches: 83, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
214 76 0.16
215 213 0.46
216 137 0.30
217 37 0.08
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (215 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTTC
CTTAAAGTATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGAGAAATT
GTATCATTTGGTCAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
TTACATGAGAATTGTTTTTC
Found at i:18284802 original size:216 final size:214
Alignment explanation
Indices: 18283985--18284932 Score: 903
Period size: 216 Copynumber: 4.4 Consensus size: 214
18283975 AGAAAAAGAA
* * * *
18283985 TATTTATGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTCTGAACTTGTCAAACATTTAC
1 TATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
* * * * *
18284050 GAGTTCTTTTATAACTTCGGTTACTGAGAGTATTCATGACGATCCATTCCTTCGACCAA-TTTTC
66 GAGTTCTTTTATAACTTCGATTACTTAAAGTATTCAAGACGATCCATTCCTTCAACCAATTTTTC
* * * * **
18284114 TTAACATTCCATGCTTGGGAAATTGCATCATTTGGTCAAATTGTTTGTCATTTTGTAAACTAGTT
131 -GAACATTCCATGCTCGGAAAATCGCATCATTTGGTCAAATTGTTTGTCATTTTGTAAAC-AAAT
*
18284179 TTTGTTTTTGAATTAAAAACT
194 TTTGTCTTTGAATTAAAAACT
* *
18284200 TATTTACT-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCATACATTTA
1 TATTTA-TATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTA
* * *
18284264 CGAGTTCTTTTATAAGTTCGATT-CGTAAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTT
65 CGAGTTCTTTTATAACTTCGATTACTTAA-AGTATTCAAGACGATCCATTCCTTCAACCAATTTT
* * ** ** *
18284328 TCGAACATTCCGTGCTC-GAGAATTCGCATCATTTGGTCTAAAAAGTTTGTCATTCAGTAAAAAA
129 TCGAACATTCCATGCTCGGA-AAATCGCATCATTTGGTC-AAATTGTTTGTCATTTTGT-AAACA
** *
18284392 AAAATTGTCTTTGAATCAAAAACT
191 AATTTTGTCTTTGAATTAAAAACT
* * * * * **
18284416 TATTTACATGAGGAATAG-TTCTCTCCTT-CTTCTTGGATGAACTTCCGAACTAGTCAAATTTTT
1 TATTTATATGA-GAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA-CATT
* * * * * *
18284479 TACGGGTTCTTTTATAGCTTTGGTTCCTTAAAGTAAGTATTCAAGGCGATCCATTCCTTCAACCA
63 TACGAGTTCTTTTATAACTTCGATTACTT--A--AAGTATTCAAGACGATCCATTCCTTCAACCA
* * * * * * **
18284544 ATTTTTCAAACATTTCATACTCGGTAAATCACATCATTTGGTCAGATTGTTTCACATTTTGTAAA
124 ATTTTTCGAACATTCCATGCTCGGAAAATCGCATCATTTGGTCAAATTGTTTGTCATTTTGTAAA
*
18284609 CAACTTTTGGTCTTTGAATTAAAAACT
189 CAAATTTT-GTCTTTGAATTAAAAACT
* * * * *
18284636 TATTTTTATGAGAATTGTTTTTCTCTGGGTTCTTAGATGAACTGT-CGAACTTGTCAAAC-TTTA
1 TATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAACATTT-
* * * *
18284699 ATGAGCTCTTTTATAACTTCGATTACTTAAAGTATTCAAAGACGATCCATTCCTTTAAGCAATTT
64 ACGAGTTCTTTTATAACTTCGATTACTTAAAGTATTC-AAGACGATCCATTCCTTCAACCAATTT
* * * * * * **
18284764 TTCGATCATTCCATGCTCGGAAAATCGCATAATTTGGTCTAAATAGGTAGTTAGCTT-TAAACAA
128 TTCGAACATTCCATGCTCGGAAAATCGCATCATTTGGTC-AAATTGTTTGTCATTTTGTAAACAA
*
18284828 CTTTTGTTCTTTGAA--AAAAACT
192 ATTTTG-TCTTTGAATTAAAAACT
* * * * * * *
18284850 TATTTATGTGAGAATTATTTCTCTCTTGGTT-TTAGGACGAACCTACGAACTTGTTAACCGTTTA
1 TATTTATATGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTCCGAACTTGTCAAACATTTA
* *
18284914 CAAGTTCTTTTAGAACTTC
65 CGAGTTCTTTTATAACTTC
18284933 TGTTCCTAAG
Statistics
Matches: 593, Mismatches: 113, Indels: 55
0.78 0.15 0.07
Matches are distributed among these distances:
213 3 0.01
214 70 0.12
215 148 0.25
216 156 0.26
217 42 0.07
218 5 0.01
219 35 0.06
220 69 0.12
221 63 0.11
222 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (214 bp):
TATTTATATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTAC
GAGTTCTTTTATAACTTCGATTACTTAAAGTATTCAAGACGATCCATTCCTTCAACCAATTTTTC
GAACATTCCATGCTCGGAAAATCGCATCATTTGGTCAAATTGTTTGTCATTTTGTAAACAAATTT
TGTCTTTGAATTAAAAACT
Found at i:18285472 original size:216 final size:215
Alignment explanation
Indices: 18284958--18285553 Score: 740
Period size: 215 Copynumber: 2.8 Consensus size: 215
18284948 TCAAAATGAT
*
18284958 ACATTCCGTGCTTGGGAAATCGCATCATTTGGTC-AAATTGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAACTTTT
* * *
18285022 TGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTGTCTCTTGATTCTTGGA-TGAACTTT
66 GGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGATTCTTGGACT-AA-GTT
* * * * * **
18285086 CGAACTTGTCAACCATTTACGAGTTCTTTTACAACTTCTGTTCTTAAGAGCATTTAAGATGATCC
129 CGAACTAGTCAAACATTTACGAGTTCTTTTATAACTTATGTTCTTAAGAGCATTAAAGACAATCC
18285151 ATTCTTTTGACCAATTTTCCAA
194 ATTCTTTTGACCAATTTTCCAA
* * * * * *
18285173 ACATTCCAAGCTTGGGAAATAGCATCATTTGGT-TAGATTGTTTGCCATTTAGTAAACAGCTTTT
1 ACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAACTTTT
* * *
18285237 GGTCTTTGAATTAAAAACTTATTTACATGAGACTTGTTTTTCTCTT-AGTTCCTGGACTAAGTTA
66 GGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGA-TTCTTGGACTAAGTT-
* * * * *
18285301 CGAACTAGTTAAACTTTTATGAGTTCTTATATAACTTATGTTCCTTAA-AGTATTCAAAGACAAT
129 CGAACTAGTCAAACATTTACGAGTTCTTTTATAACTTATGTT-CTTAAGAGCATT-AAAGACAAT
* *
18285365 CCATTAC-TTTGAGCGATTTTCCAA
192 CCATT-CTTTTGACCAATTTTCCAA
* * *
18285389 ACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAACTTTT
* * * *
18285454 GGTCTTTAAATT-AAAACTTTTTTACGT-AGGAATTGTTTCTCTCTTGATTCTTGGACGAAGTTC
66 GGTCTTTGAATTAAAAACTTATTTACATGA-GAATTGTTTCTCTCTTGATTCTTGGACTAAGTTC
*
18285517 TAAACTAGTCAAACATTTACGAGTTCTTTTATAACTT
130 -GAACTAGTCAAACATTTACGAGTTCTTTTATAACTT
18285554 TGATTACTGG
Statistics
Matches: 323, Mismatches: 47, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
214 3 0.01
215 149 0.46
216 132 0.41
217 39 0.12
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (215 bp):
ACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAACTTTT
GGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGATTCTTGGACTAAGTTCG
AACTAGTCAAACATTTACGAGTTCTTTTATAACTTATGTTCTTAAGAGCATTAAAGACAATCCAT
TCTTTTGACCAATTTTCCAA
Found at i:18286328 original size:74 final size:74
Alignment explanation
Indices: 18286238--18286382 Score: 254
Period size: 74 Copynumber: 2.0 Consensus size: 74
18286228 CAAAATGAGA
* *
18286238 GTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAGAAACTCCTGAATGAA
1 GTGAACAACCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCCTGAATGAA
18286303 ACATTGAAT
66 ACATTGAAT
* *
18286312 GTGAACAGCCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCTTGAATGAA
1 GTGAACAACCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCCTGAATGAA
18286377 ACATTG
66 ACATTG
18286383 TATCCCTCCA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 67 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (74 bp):
GTGAACAACCATCATTCATCATTCATAAATAAATGTGTTGATTCATTTAAAAACTCCTGAATGAA
ACATTGAAT
Found at i:18289864 original size:17 final size:17
Alignment explanation
Indices: 18289844--18289876 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
18289834 AAAACACTTA
18289844 TTAAACTAAAA-TAAAAC
1 TTAAA-TAAAATTAAAAC
18289861 TTAAATAAAATTAAAA
1 TTAAATAAAATTAAAA
18289877 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAATAAAATTAAAAC
Found at i:18291265 original size:32 final size:32
Alignment explanation
Indices: 18291213--18291275 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
18291203 GCCATCCATA
* * *
18291213 CATGTACCTGAAATATATTAATCAGCTAATTG
1 CATGTACCTAAAACACATTAATCAGCTAATTG
**
18291245 CATGTACCTAAAACACATTAATTTGCTAATT
1 CATGTACCTAAAACACATTAATCAGCTAATT
18291276 AATTTCAGCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (32 bp):
CATGTACCTAAAACACATTAATCAGCTAATTG
Found at i:18298475 original size:181 final size:181
Alignment explanation
Indices: 18298171--18298539 Score: 535
Period size: 181 Copynumber: 2.0 Consensus size: 181
18298161 GTAAACAAGT
18298171 TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
* *
18298236 TTCGAACTTGTCAAACATGTACGAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGAT
66 TTCGAACTTGTCAAACATGTACGAGTTCTTTTACAACTTCGGTTCCTAAGAGTATTCAAGACAAT
* ** * *
18298301 CCATTCCTTCGACCAATATTT-CGAACATTCTGTGCT-TGAGAAATCATATCA
131 CCATTCCTTCGACCAAT-TTTCCAAACATTCCATGCTCAG-GAAATCACATCA
* * * * **
18298352 TTTGGTCTTTGAATTAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGATTAACT
1 TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
* * * * *
18298417 TTTGAACTTGTCAAACATTTACGAGTTCTTTTACAACTTTGGTTCCTGAGAGTATTCAAGATAAT
66 TTCGAACTTGTCAAACATGTACGAGTTCTTTTACAACTTCGGTTCCTAAGAGTATTCAAGACAAT
*
18298482 CCATTCCTTTGACCAATTTTCCAAACATTCCATGCTCAGGAAATCACATCA
131 CCATTCCTTCGACCAATTTTCCAAACATTCCATGCTCAGGAAATCACATCA
18298533 TTTGGTC
1 TTTGGTC
18298540 AGATTATTTG
Statistics
Matches: 167, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
180 3 0.02
181 163 0.98
182 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (181 bp):
TTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
TTCGAACTTGTCAAACATGTACGAGTTCTTTTACAACTTCGGTTCCTAAGAGTATTCAAGACAAT
CCATTCCTTCGACCAATTTTCCAAACATTCCATGCTCAGGAAATCACATCA
Found at i:18298721 original size:396 final size:396
Alignment explanation
Indices: 18297980--18298754 Score: 1102
Period size: 396 Copynumber: 2.0 Consensus size: 396
18297970 CCGAGAATTG
* * * *
18297980 TTTATGTGAGAATTGTTTCTCTCTTTATTCTTGGACAAACTTTCAAATTTGTCAAACATTTATGA
1 TTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACAAACTTTCAAACTTGTCAAACATTTACGA
* *
18298045 GTTCTTTTATAACTTCGGTTACTGAGAGTATTCAAGACGATCCATTCATTCGACCAATTTTCCAA
66 GTTCTTTTACAACTTCGGTTACTGAGAGTATTCAAGACAATCCATTCATTCGACCAATTTTCCAA
* * * * * *
18298110 ACATTCCATGCCCAGGAAATCGCTTGATTTGTGCAAAGTGTTTGTCATTTTGTAAACAAGTTTTG
131 ACATTCCATGCCCAGGAAATCACATCATTTGTGCAAAGTATTTGTCATTTAGTAAACAACTTTTG
*
18298175 GTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTCG
196 GTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTCA
* *
18298240 AACTTGTCAAACATGTACGAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACGATCCAT
261 AACTTGTCAAACATGTACGAGTTCTATTATAACTTCGGCTCCTAAGAGTATTCAAGACGATCCAT
* * *
18298305 TCCTTCGACCAATATTTCGAACATTCTGTGCTTGAGAAATCATATCATTTGGTCTTTGAATTAAA
326 TCCTTCAACCAATATTTCGAAAATTCTGTGCTTAAGAAATCATATCATTTGGTCTTTGAATTAAA
18298370 AACTTA
391 AACTTA
* * ** **
18298376 TTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGATTAACTTTTGAACTTGTCAAACATTTACGA
1 TTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACAAACTTTCAAACTTGTCAAACATTTACGA
* * * * *
18298441 GTTCTTTTACAACTTTGGTTCCTGAGAGTATTCAAGATAATCCATTCCTTTGACCAATTTTCCAA
66 GTTCTTTTACAACTTCGGTTACTGAGAGTATTCAAGACAATCCATTCATTCGACCAATTTTCCAA
* * *
18298506 ACATTCCATGCTCAGGAAATCACATCATTTG-GTCAGATTATTTGTCATTTAGTAAACAACTTTT
131 ACATTCCATGCCCAGGAAATCACATCATTTGTG-CAAAGTATTTGTCATTTAGTAAACAACTTTT
* * * **
18298570 GGTCTTTGAATTAAAAAGTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTTC
195 GGTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTC
* * * * * *
18298635 AAATTTGTCAAACATTTATGAGTTCTATTATAACTTCGGCTCTTAAGAGTATTTAGGACGATCCA
260 AAACTTGTCAAACATGTACGAGTTCTATTATAACTTCGGCTCCTAAGAGTATTCAAGACGATCCA
* * * * *
18298700 TTCCTTTAACTATTTTTTCGAAAATTCTGTGCTTAAGAAATCGTATCATTTGGTC
325 TTCCTTCAACCAATATTTCGAAAATTCTGTGCTTAAGAAATCATATCATTTGGTC
18298755 AAACTATTTG
Statistics
Matches: 330, Mismatches: 48, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
395 1 0.00
396 329 1.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (396 bp):
TTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACAAACTTTCAAACTTGTCAAACATTTACGA
GTTCTTTTACAACTTCGGTTACTGAGAGTATTCAAGACAATCCATTCATTCGACCAATTTTCCAA
ACATTCCATGCCCAGGAAATCACATCATTTGTGCAAAGTATTTGTCATTTAGTAAACAACTTTTG
GTCTTTGAATAAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTCA
AACTTGTCAAACATGTACGAGTTCTATTATAACTTCGGCTCCTAAGAGTATTCAAGACGATCCAT
TCCTTCAACCAATATTTCGAAAATTCTGTGCTTAAGAAATCATATCATTTGGTCTTTGAATTAAA
AACTTA
Found at i:18298750 original size:215 final size:216
Alignment explanation
Indices: 18298352--18299662 Score: 1321
Period size: 215 Copynumber: 6.1 Consensus size: 216
18298342 AATCATATCA
* **
18298352 TTTGGTCTTTGAATTAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGATTAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * * **
18298417 TTTGAACTTGTCAAACATTTACGAGTTCTTTTACAACTTTGGTTCC-TGAGAGTATTCAAGATAA
66 TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACGA
* * * *
18298481 TCCATTCCTTTGACCAATTTTCCAAACATTCCATGCTCAGGAAATCACATCATTTGGTCAGATTA
131 TCCATTCCTTTAACCAATTTTCCAAACATTCCATGCTTAGGAAATCGCATCATTTGGTCAAATTA
*
18298546 TTTGTCATTTAGTAAACAACT
196 TTTGTCATTTTGTAAACAACT
* *
18298567 TTTGGTCTTTGAATTAAAAAGTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
18298632 TTCAAATTTGTCAAACATTTATGAGTTCTATTATAACTTCGGCT-CTTAAGAGTATTTAGGACGA
66 TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACGA
* * * ** * * *
18298696 TCCATTCCTTTAACTATTTTTTCGAAA-ATTCTGTGCTTAAGAAATCGTATCATTTGGTCAAACT
131 TCCATTCCTTTAACCA-ATTTTCCAAACATTCCATGCTTAGGAAATCGCATCATTTGGTCAAATT
* *
18298760 ATTTGTCTTTTTGTATACAACT
195 ATTTGTCATTTTGTAAACAACT
* * * * * *
18298782 ATTGGTCTATGAACTAAAAACTTATTCATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
18298847 TCCAAACTTGTCAAAC-TTTAATGAGTTCTTTTATAACTTCGGTTCCTTGA-AGTATTCAAGATG
66 TTCAAACTTGTCAAACATTT-ATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACG
* ** * * * * * *
18298910 ATCTATTCCTTCGACCTATTTCCCGAACATTCCATCCTTAGGAAATCGTATCATTTGGTTAAATT
130 ATCCATTCCTTTAACCAATTTTCCAAACATTCCATGCTTAGGAAATCGCATCATTTGGTCAAATT
* *
18298975 GTTTGTTATTTTGTAAACAACCT
195 ATTTGTCATTTTGTAAACAA-CT
*
18298998 TTT-GTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAAC-
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * * *
18299060 TTCAAAACTTATCAAAGGTTAATGAGTTCTTTTATAACTTTGATTCCTTAAG-GTATTCATGACG
66 TTC-AAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACG
** * * * *
18299124 ATCCATTCCTTCGACCAATTTTCCAAACATTCCATGC-TCGAGAAATTGCATCATTTCGTGAAAT
130 ATCCATTCCTTTAACCAATTTTCCAAACATTCCATGCTTAG-GAAATCGCATCATTTGGTCAAAT
18299188 TATTTGTCATTTTGTAAACAACT
194 TATTTGTCATTTTGTAAACAACT
* * * *
18299211 TTTGGTCTTTGAATT-AAAACTTATTTATGTGAGAATTATTTCTCTTTTGGTTCTTGGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
18299275 TAT-GAACTAGTCAAACTTTTATGAGTACTTTTATAACTT-GGGTCCTTTA-AGTATTTAAAGAC
66 T-TCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTA-TTCAAGAC
* * * * * * * *
18299337 GACCCATTCCTTTGAGCAATTTTCCAAACATTTCAAGCTTGGGAAATTGCATCATTAGGTCTAAA
129 GATCCATTCCTTTAACCAATTTTCCAAACATTCCATGCTTAGGAAATCGCATCATTTGGTC-AAA
*
18299402 -TAGTTTGTCATTTTTTCAAA-AACT
193 TTA-TTTGTCATTTTGT-AAACAACT
* * *
18299426 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * ** * * *
18299491 TTTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCC-TCAGAGTATTCAAGATGG
66 TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACGA
* * * * * * * * * *
18299555 TACAATCCATCAGCCAATATTT-CGAGCATTCCATG-ATCGAGAAATCGCATCATTAGGTCTAAA
131 TCCATTCCTTTAACCAAT-TTTCCAAACATTCCATGCTTAG-GAAATCGCATCATTTGGTC-AAA
* * *
18299618 -TAGTTTATAATTTTGTAAACATCT
193 TTA-TTTGTCATTTTGTAAACAACT
* * *
18299642 TTTTGTTTTTTAATTAAAAAC
1 TTTGGTCTTTGAATTAAAAAC
18299663 CTAATGAACT
Statistics
Matches: 905, Mismatches: 164, Indels: 53
0.81 0.15 0.05
Matches are distributed among these distances:
213 49 0.05
214 250 0.28
215 417 0.46
216 179 0.20
217 10 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TTCAAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGAGTATTCAAGACGA
TCCATTCCTTTAACCAATTTTCCAAACATTCCATGCTTAGGAAATCGCATCATTTGGTCAAATTA
TTTGTCATTTTGTAAACAACT
Found at i:18299815 original size:182 final size:182
Alignment explanation
Indices: 18299486--18299838 Score: 453
Period size: 182 Copynumber: 1.9 Consensus size: 182
18299476 GTTCTTAGAC
*
18299486 GAACTTTTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
1 GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
* * *
18299551 ATGGTACAATCCATCAGCCAATATTTCGAGCATTCCATGATCGAGAAATCGCATCATTAGGTCTA
66 ATGATACAATCCATCAGCCAATATTTCGAACAGTCCATGATCGAGAAATCGCATCATTAGGTCTA
* * * * *
18299616 AATAGTTTATAATTTTGTAAACATCTTTTTGTTTTTTAATTAAAAACCTAAT
131 AAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATTAAAAACCTAAT
* * * *
18299668 GAACTTCTGAACTTGTCAAATATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAG
1 GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
* * * * * *
18299733 ATGATCCATTTCTTC-GACCGAT-TTATCGAACAGTCCAT-AGTCG-GAAATTCGCATCATTTGG
66 ATGATACAATCCATCAG-CCAATATT-TCGAACAGTCCATGA-TCGAGAAA-TCGCATCATTAGG
* *
18299794 TCTAAAAAGTTTCTCATTTTGTAAACAACATTTTGTCTTTGAATT
127 TCTAAAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATT
18299839 CGCAAGGACC
Statistics
Matches: 146, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
181 8 0.05
182 138 0.95
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (182 bp):
GAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTCATAACTTCAATTCCTCAGAGTATTCAAG
ATGATACAATCCATCAGCCAATATTTCGAACAGTCCATGATCGAGAAATCGCATCATTAGGTCTA
AAAAGTTTATAATTTTGTAAACAACATTTTGTCTTTGAATTAAAAACCTAAT
Found at i:18302157 original size:216 final size:215
Alignment explanation
Indices: 18301775--18302450 Score: 826
Period size: 215 Copynumber: 3.1 Consensus size: 215
18301765 TCCCTTCGAC
* * *
18301775 CAATTTTCCGAACATTCCATACTCGAGAAATTGCATCA-TTGGTCAGATTGTTTGTCATTTTGTA
1 CAATTTTCCGAACATTCCATGCTCGAGAAATTGTATCATTTGGTCAAATTGTTTGTCATTTTGTA
*
18301839 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTTTCTCTGGGTTCTTGG
66 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTTTCTCTTGGTTCTTGG
* * *
18301904 ACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTGTAACTTTGGTTCCTTAAAGTATTCA
131 ACGAACTTACGAACTTCTCAAACTTTTATGAGTTCTTTTGTAACTTTAGTTCCTTAAAGTATTCA
18301969 AAGACGATCAGTTCCTTTGAG
196 AAGACGATCA-TTCCTTTGAG
* * * * * *
18301990 CAATTTTTCGATCATTCCATGCTCGGGAAATTGTATCATTTGGTCTAAATAGTTTGTTATTTTTT
1 CAATTTTCCGAACATTCCATGCTCGAGAAATTGTATCATTTGGTC-AAATTGTTTGTCATTTTGT
* * *
18302055 AAACAACTTTTGGCCTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTT-TCTTGGTTCTA
65 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTT-TTCTCTTGGTTCTT
* * * * * * * *
18302118 GGATGAACTTTCGAACTTCTCAAACATTTACGTGTTCTTTTAG-AACTTTAGTTCCTGAGATTAT
129 GGACGAACTTACGAACTTCTCAAACTTTTATGAGTTCTTTT-GTAACTTTAGTTCCTTAAAGTAT
* * * *
18302182 TC-AAGACGCTCCCTTCCTTCGAC
193 TCAAAGACGAT-CATTCCTTTGAG
* ** * * * *
18302205 CAATATTCCGAACATTCTGTGCTC-AGGAAATCGTATCATTTGGCCAAATTGTTTGCCACTTTGT
1 CAATTTTCCGAACATTCCATGCTCGA-GAAATTGTATCATTTGGTCAAATTGTTTGTCATTTTGT
*
18302269 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTTTCTCTTGGTTCTTG
65 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTTTCTCTTGGTTCTTG
* * * * * * * *
18302334 GACGAAGTTACGAACTAGC-AAAACTTTTATGAGTTCTTATATGACTTCAGTTCCTTAAAGTGTT
130 GACGAACTTACGAACT-TCTCAAACTTTTATGAGTTCTTTTGTAACTTTAGTTCCTTAAAGTATT
18302398 CAAAGACGATCCATTCCTTTGAG
194 CAAAGACGAT-CATTCCTTTGAG
*
18302421 CAATTTTCCAAACATTCCATGCTCGAGAAA
1 CAATTTTCCGAACATTCCATGCTCGAGAAA
18302451 AAGAATATTT
Statistics
Matches: 381, Mismatches: 68, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
214 36 0.09
215 167 0.44
216 139 0.36
217 39 0.10
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (215 bp):
CAATTTTCCGAACATTCCATGCTCGAGAAATTGTATCATTTGGTCAAATTGTTTGTCATTTTGTA
AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTTTCTCTTGGTTCTTGG
ACGAACTTACGAACTTCTCAAACTTTTATGAGTTCTTTTGTAACTTTAGTTCCTTAAAGTATTCA
AAGACGATCATTCCTTTGAG
Done.