Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 60 of 143
Found at i:19301017 original size:21 final size:20
Alignment explanation
Indices: 19300976--19301028 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
19300966 AGAGTATTTA
19300976 GTATCGGTAGAGGTAAGACTT
1 GTATCGGTAGAGG-AAGACTT
19300997 GTATCGGTAGAGG-AGTCACTT
1 GTATCGGTAGAGGAAG--ACTT
*
19301018 GTTTCGGTAGA
1 GTATCGGTAGA
19301029 ACTGTCACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 2 0.07
21 27 0.93
ACGTcount: A:0.25, C:0.11, G:0.34, T:0.30
Consensus pattern (20 bp):
GTATCGGTAGAGGAAGACTT
Found at i:19301035 original size:21 final size:21
Alignment explanation
Indices: 19300993--19301041 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
19300983 TAGAGGTAAG
**
19300993 ACTTGTATCGGTAGAGGAGTC
1 ACTTGTATCGGTAGAACAGTC
* *
19301014 ACTTGTTTCGGTAGAACTGTC
1 ACTTGTATCGGTAGAACAGTC
19301035 ACTTGTA
1 ACTTGTA
19301042 CTTATACAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (21 bp):
ACTTGTATCGGTAGAACAGTC
Found at i:19302271 original size:2 final size:2
Alignment explanation
Indices: 19302264--19302295 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
19302254 TTTACCATTA
19302264 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19302296 GAAATTAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:19315717 original size:3 final size:3
Alignment explanation
Indices: 19315709--19315760 Score: 81
Period size: 3 Copynumber: 18.0 Consensus size: 3
19315699 TTTTAATTTC
*
19315709 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA A-A ATT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
19315755 ATA ATA
1 ATA ATA
19315761 TTTTATGAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 4 0.09
3 41 0.91
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:19317779 original size:13 final size:13
Alignment explanation
Indices: 19317761--19317800 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
19317751 TCGTGAAGGA
*
19317761 TATTAATCTAAAG
1 TATTAATCTAAAC
19317774 TATTAATCTAAAC
1 TATTAATCTAAAC
19317787 TAAATTAATCTAAA
1 T--ATTAATCTAAA
19317801 TTAAAGCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 13 0.54
15 11 0.46
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.38
Consensus pattern (13 bp):
TATTAATCTAAAC
Found at i:19317795 original size:15 final size:15
Alignment explanation
Indices: 19317762--19317805 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
19317752 CGTGAAGGAT
*
19317762 ATTAATCTAAAGT--
1 ATTAATCTAAACTAA
19317775 ATTAATCTAAACTAA
1 ATTAATCTAAACTAA
*
19317790 ATTAATCTAAATTAA
1 ATTAATCTAAACTAA
19317805 A
1 A
19317806 GCTAAAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 12 0.44
15 15 0.56
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.36
Consensus pattern (15 bp):
ATTAATCTAAACTAA
Found at i:19320982 original size:38 final size:38
Alignment explanation
Indices: 19320940--19321023 Score: 116
Period size: 38 Copynumber: 2.2 Consensus size: 38
19320930 TGAGTCTATT
* * * *
19320940 CAGAATTGCGCCCATAATTGTCACTGCATGATG-ATGTC
1 CAGAATTGCACCCAAAATTATCACTGCATGA-GCATGCC
19320978 CAGAATTGCACCCAAAATTATCACTGCATGAGCATGCC
1 CAGAATTGCACCCAAAATTATCACTGCATGAGCATGCC
19321016 CAGAATTG
1 CAGAATTG
19321024 TCGCTGCAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 1 0.02
38 40 0.98
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (38 bp):
CAGAATTGCACCCAAAATTATCACTGCATGAGCATGCC
Found at i:19321076 original size:26 final size:26
Alignment explanation
Indices: 19321047--19321108 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
19321037 TTGTTCAAAA
19321047 TTATCGCTGTGTGAATATGTCCAGAG
1 TTATCGCTGTGTGAATATGTCCAGAG
19321073 TTATCGCTGTGTGAATATGTCCAGAG
1 TTATCGCTGTGTGAATATGTCCAGAG
19321099 TTATCGCTGT
1 TTATCGCTGT
19321109 ATAAGCATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (26 bp):
TTATCGCTGTGTGAATATGTCCAGAG
Found at i:19321118 original size:26 final size:26
Alignment explanation
Indices: 19321047--19321121 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
19321037 TTGTTCAAAA
* *
19321047 TTATCGCTGTGTGAATATGTCCAGAG
1 TTATCGCTGTATGAACATGTCCAGAG
* *
19321073 TTATCGCTGTGTGAATATGTCCAGAG
1 TTATCGCTGTATGAACATGTCCAGAG
19321099 TTATCGCTGTAT-AAGCATGTCCA
1 TTATCGCTGTATGAA-CATGTCCA
19321122 AAATTGCGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 2 0.04
26 44 0.96
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (26 bp):
TTATCGCTGTATGAACATGTCCAGAG
Found at i:19324433 original size:38 final size:38
Alignment explanation
Indices: 19324350--19324433 Score: 98
Period size: 38 Copynumber: 2.2 Consensus size: 38
19324340 TGAGTCTATT
* * * *
19324350 CAAAATTGCACCCAGAATTGTCTCTGCATGACGATGTC
1 CAAAATTGCACCCAAAATTATCACTGCATGACGATGCC
*
19324388 CAAAATTGCGCCCAAAATTATCACTGCATGA-GCATGCC
1 CAAAATTGCACCCAAAATTATCACTGCATGACG-ATGCC
*
19324426 CATAATTG
1 CAAAATTG
19324434 TCGTTACCGG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
37 1 0.03
38 38 0.97
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (38 bp):
CAAAATTGCACCCAAAATTATCACTGCATGACGATGCC
Found at i:19324696 original size:2 final size:2
Alignment explanation
Indices: 19324679--19324719 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
19324669 AAGAGAAAAG
* *
19324679 CT CT CT C- CT -T CA CT CT CT CT CT CT CT CG CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
19324719 C
1 C
19324720 CTTTAGTCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
1 2 0.06
2 31 0.94
ACGTcount: A:0.02, C:0.51, G:0.02, T:0.44
Consensus pattern (2 bp):
CT
Found at i:19324718 original size:16 final size:16
Alignment explanation
Indices: 19324679--19324719 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
19324669 AAGAGAAAAG
19324679 CTCTCTC-CT-TCACT
1 CTCTCTCTCTCTCACT
*
19324693 CTCTCTCTCTCTCGCT
1 CTCTCTCTCTCTCACT
19324709 CTCTCTCTCTC
1 CTCTCTCTCTC
19324720 CTTTAGTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 7 0.29
15 2 0.08
16 15 0.62
ACGTcount: A:0.02, C:0.51, G:0.02, T:0.44
Consensus pattern (16 bp):
CTCTCTCTCTCTCACT
Found at i:19338520 original size:40 final size:40
Alignment explanation
Indices: 19338465--19338547 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
19338455 AATCTTCGAT
19338465 AGAATCCAGCATGTCCCAAAAAGCTCCTAACACCCTATAC
1 AGAATCCAGCATGTCCCAAAAAGCTCCTAACACCCTATAC
19338505 AGAATCCAGCATGTCCCAAAAAGCTCCTAACACCCTATAC
1 AGAATCCAGCATGTCCCAAAAAGCTCCTAACACCCTATAC
19338545 AGA
1 AGA
19338548 TGTCAGAGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.39, C:0.34, G:0.11, T:0.17
Consensus pattern (40 bp):
AGAATCCAGCATGTCCCAAAAAGCTCCTAACACCCTATAC
Found at i:19342303 original size:13 final size:13
Alignment explanation
Indices: 19342283--19342316 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
19342273 TTGTTTGATG
*
19342283 TTTATTTTTGT-T
1 TTTATTTTTGTAC
19342295 TTTATTTTTGTAC
1 TTTATTTTTGTAC
19342308 TTTATTTTT
1 TTTATTTTT
19342317 ATTATCTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.12, C:0.03, G:0.06, T:0.79
Consensus pattern (13 bp):
TTTATTTTTGTAC
Found at i:19352244 original size:122 final size:122
Alignment explanation
Indices: 19352027--19352271 Score: 463
Period size: 122 Copynumber: 2.0 Consensus size: 122
19352017 TAACAACTAT
*
19352027 TCTCACAATTTATCTTGCTTTTATTTGTTTATTGCACTGACATTAATAAACAAAAAGACAATCAT
1 TCTCACAATTTATCTTGCTTTTATTTGTTTATTGCACTGACATTAATAAACAAAAAGACAACCAT
*
19352092 CCTCATGGGATCGATATCCGACAAAGTCACATCTGTTTACTATACTTGCATCGACAG
66 CCTCATGGGATCAATATCCGACAAAGTCACATCTGTTTACTATACTTGCATCGACAG
19352149 TCTCACAATTTATCTTGCTTTTATTTGTTTATTGCACTGACATTAATAAACAAAAAGACAACCAT
1 TCTCACAATTTATCTTGCTTTTATTTGTTTATTGCACTGACATTAATAAACAAAAAGACAACCAT
*
19352214 CCTCATGGGATCAATATCCGACAGAGTCACATCTGTTTACTATACTTGCATCGACAG
66 CCTCATGGGATCAATATCCGACAAAGTCACATCTGTTTACTATACTTGCATCGACAG
19352271 T
1 T
19352272 GTATGTTTGC
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 120 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (122 bp):
TCTCACAATTTATCTTGCTTTTATTTGTTTATTGCACTGACATTAATAAACAAAAAGACAACCAT
CCTCATGGGATCAATATCCGACAAAGTCACATCTGTTTACTATACTTGCATCGACAG
Found at i:19365350 original size:17 final size:17
Alignment explanation
Indices: 19365311--19365386 Score: 89
Period size: 17 Copynumber: 4.5 Consensus size: 17
19365301 ATATATATAG
* * *
19365311 AAATGCAATGACAATAT
1 AAATGCAGTGATAATAA
* *
19365328 AGATGCAGTGATGATAA
1 AAATGCAGTGATAATAA
*
19365345 AAATGCAGTGACAATAA
1 AAATGCAGTGATAATAA
*
19365362 AAATGCAGGGATAATAA
1 AAATGCAGTGATAATAA
19365379 AAATGCAG
1 AAATGCAG
19365387 CTATATGATA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 49 1.00
ACGTcount: A:0.50, C:0.09, G:0.21, T:0.20
Consensus pattern (17 bp):
AAATGCAGTGATAATAA
Found at i:19365386 original size:34 final size:34
Alignment explanation
Indices: 19365311--19365386 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
19365301 ATATATATAG
* * * * *
19365311 AAATGCAATGACAATATAGATGCAGTGATGATAA
1 AAATGCAGTGACAATAAAAATGCAGGGATAATAA
19365345 AAATGCAGTGACAATAAAAATGCAGGGATAATAA
1 AAATGCAGTGACAATAAAAATGCAGGGATAATAA
19365379 AAATGCAG
1 AAATGCAG
19365387 CTATATGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.50, C:0.09, G:0.21, T:0.20
Consensus pattern (34 bp):
AAATGCAGTGACAATAAAAATGCAGGGATAATAA
Found at i:19368837 original size:37 final size:37
Alignment explanation
Indices: 19368796--19368967 Score: 141
Period size: 37 Copynumber: 4.6 Consensus size: 37
19368786 CGACGTGTAG
* * *
19368796 CTAGTAGACTTCGTGCCGATGAATTCAGACTATGTGT
1 CTAGTAGGCTTCGTGCCGATGAATTCAGACTTTGTGC
* * * *
19368833 CTAGTAGGCTTTGTGCC-AGTGTATTCAGGCTTTGTAC
1 CTAGTAGGCTTCGTGCCGA-TGAATTCAGACTTTGTGC
* * * * * * *
19368870 CTATTAGGCTTCATGCTGATGAATTTAGACTGTATGT
1 CTAGTAGGCTTCGTGCCGATGAATTCAGACTTTGTGC
* * *
19368907 CTAGTAGGTTTCGTGCC-AGTGTATTCAGGCTTTGTGC
1 CTAGTAGGCTTCGTGCCGA-TGAATTCAGACTTTGTGC
* *
19368944 CTAGTAGGCTTGGTGCCGGTGAAT
1 CTAGTAGGCTTCGTGCCGATGAAT
19368968 CAAGAAGGAA
Statistics
Matches: 99, Mismatches: 32, Indels: 8
0.71 0.23 0.06
Matches are distributed among these distances:
36 2 0.02
37 96 0.97
38 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.27, T:0.36
Consensus pattern (37 bp):
CTAGTAGGCTTCGTGCCGATGAATTCAGACTTTGTGC
Found at i:19368967 original size:74 final size:74
Alignment explanation
Indices: 19368791--19368967 Score: 239
Period size: 74 Copynumber: 2.4 Consensus size: 74
19368781 ATTGACGACG
* * *
19368791 TGTAGCTAGTAGACTTCGTGCCGATGAATTCAGACTATGTGTCTAGTAGGCTTTGTGCCAGTGTA
1 TGTACCTAGTAGGCTTCGTGCCGATGAATTCAGACTATATGTCTAGTAGGCTTTGTGCCAGTGTA
19368856 TTCAGGCTT
66 TTCAGGCTT
* * * * *
19368865 TGTACCTATTAGGCTTCATGCTGATGAATTTAGACTGTATGTCTAGTAGG-TTTCGTGCCAGTGT
1 TGTACCTAGTAGGCTTCGTGCCGATGAATTCAGACTATATGTCTAGTAGGCTTT-GTGCCAGTGT
19368929 ATTCAGGCTT
65 ATTCAGGCTT
* * *
19368939 TGTGCCTAGTAGGCTTGGTGCCGGTGAAT
1 TGTACCTAGTAGGCTTCGTGCCGATGAAT
19368968 CAAGAAGGAA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
73 3 0.03
74 85 0.97
ACGTcount: A:0.19, C:0.17, G:0.28, T:0.36
Consensus pattern (74 bp):
TGTACCTAGTAGGCTTCGTGCCGATGAATTCAGACTATATGTCTAGTAGGCTTTGTGCCAGTGTA
TTCAGGCTT
Found at i:19374539 original size:16 final size:16
Alignment explanation
Indices: 19374514--19374547 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
19374504 ATTCTGGCTC
*
19374514 GAGAAGTAAAAGAGTT
1 GAGAAATAAAAGAGTT
*
19374530 GAGAAATAAAAGGGTT
1 GAGAAATAAAAGAGTT
19374546 GA
1 GA
19374548 ATTGGTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.32, T:0.18
Consensus pattern (16 bp):
GAGAAATAAAAGAGTT
Found at i:19376614 original size:696 final size:696
Alignment explanation
Indices: 19375283--19377368 Score: 3897
Period size: 696 Copynumber: 3.0 Consensus size: 696
19375273 AAAAAATAAT
*
19375283 TAACGTGTTGATCAATAAAAAGAGTAACTAAATTGAGGAATTAGAAAGTTATTTTTATTATTGAT
1 TAACGTGTTGATCAATAAAAAGAGTAACTAAATTGAGGAATTAGAAAGTTATTTTTATTATTGAC
* * * *
19375348 GATTCTCTTTTAATTATTTTTCTTTCTTTAAGTCTTCAATTGAGATTGACGCACTGTGGGTAACT
66 GATTCTCTTTTAATTA-TTTT-TTTCTTTCAGTCGTCAATTGAGATCGATGCACTGTGGGTAACT
* * *
19375413 ACTAGAACCTTTAA-TACTCAATGCTCTTGATAATAGCCAAGGTGATAACGATGATGTTAAAGAT
129 ACTAGAGCCTTTAATTACTTAGTGCTCTTGATAATAGCCAAGGTGATAACGATGATGTTAAAGAT
* *
19375477 CTTCAGGCATATTTCGCTATGATTTATTTATTATACCATGTTTATTATAATTTGGGACTAATCAT
194 CTTCAGGTATATTTCACTATGATTTATTTATTATACCATGTTTATTATAATTTGGGACTAATCAT
19375542 GACAATATGAATAGATGGATTTTGATTTGAAATACACGCATGTTTGCGATGGTGATTAT-GAATA
259 GACAATATGAATAGATGGATTTTGATTTGAAATACACGCATGTTTGCGATGGTGATTATGGAATA
19375606 AATAATCTAGCGGGACATTTATAAGTTCATCCTATTAAATTTGTTGCATTGAATGCAAATATAAA
324 AATAATCTAGCGGGACATTTATAAGTTCATCCTATTAAATTTGTTGCATTGAATGCAAATATAAA
19375671 GAAAATGAAAGATATGATCATGGACCACTAAAAGTGGGAACATAGTGATGAATAAGAGAACAATG
389 GAAAATGAAAGATATGATCATGGACCACTAAAAGTGGGAACATAGTGATGAATAAGAGAACAATG
* * *
19375736 AGGGTTCTCAAGAAACTCTTCAAAGGGCAAAGATAACTTATGTTATCAATGTGATATAAAAGGCT
454 AGGGTTCTCAATAAACTCTTCAAAGGGCAAAGATAACTTATGTTATCAATGTGATATGAAAGGTT
19375801 ATTGGCCACATATGTGGTGTATGTCCAAATATTTTGTTTGGGTTAATATTCTTTGAGGAAGGATA
519 ATTGGCCACATATGTGGTGTATGTCCAAATATTTTGTTTGGGTTAATATTCTTTGAGGAAGGATA
19375866 TGAGAATGTAGTAATGAATTCTATCATTACAGATAGAAAATATTTATTTTATTTGGTACTGAAAC
584 TGAGAATGTAGTAATGAATTCTATCATTACAGATAGAAAATATTTATTTTATTTGGTACTGAAAC
19375931 AAACCAATATTATTCCAATATTTGGTGGTACAAAATTGGTCAAAAGAG
649 AAACCAATATTATTCCAATATTTGGTGGTACAAAATTGGTCAAAAGAG
19375979 TAACGTGTTGATCAATAAAAAGAGTAACTAAATTGAGGAATTAGAAAGTTATTTTTATTATTGAC
1 TAACGTGTTGATCAATAAAAAGAGTAACTAAATTGAGGAATTAGAAAGTTATTTTTATTATTGAC
*
19376044 GATTCTCTTTTAATTATTTTTTTCTTTCAGTCGTCAATTAAGATCGATGCACTGTGGGTAACTAC
66 GATTCTCTTTTAATTATTTTTTTCTTTCAGTCGTCAATTGAGATCGATGCACTGTGGGTAACTAC
19376109 TAGAGCCTTTAATTACTTAGTGCTCTTGATAATAGCCAAGGTGATAACGATGATGTTAAAGATCT
131 TAGAGCCTTTAATTACTTAGTGCTCTTGATAATAGCCAAGGTGATAACGATGATGTTAAAGATCT
19376174 TCAGGTATATTTCACTATGATTTATTTATTATACCATGTTTATTATAATTTGGGACTAATCATGA
196 TCAGGTATATTTCACTATGATTTATTTATTATACCATGTTTATTATAATTTGGGACTAATCATGA
*
19376239 CAAAATGAATAGATGGATTTTGATTTGAAATACACGCATGTTTGCGATGGTGATTATGGAATAAA
261 CAATATGAATAGATGGATTTTGATTTGAAATACACGCATGTTTGCGATGGTGATTATGGAATAAA
19376304 TAATCTAGCGGGACATTTATAAGTTCATCCTATTAAATTTGTTGCATTGAATGCAAATATAAAGA
326 TAATCTAGCGGGACATTTATAAGTTCATCCTATTAAATTTGTTGCATTGAATGCAAATATAAAGA
19376369 AAATGAAAGATATGATCATGGACCACTAAAAGTGGGAACATAGTGATGAATAAGAGAACAATGAG
391 AAATGAAAGATATGATCATGGACCACTAAAAGTGGGAACATAGTGATGAATAAGAGAACAATGAG
19376434 GGTTCTCAATAAACTCTTCAAAGGGCAAAGATAACTTATGTTATCAATGTGATATGAAAGGTTAT
456 GGTTCTCAATAAACTCTTCAAAGGGCAAAGATAACTTATGTTATCAATGTGATATGAAAGGTTAT
19376499 TGGCCACATATGTGGTGTATGTCCAAATATTTTGTTTGGGTTAATATTCTTTGAGGAAGGATATG
521 TGGCCACATATGTGGTGTATGTCCAAATATTTTGTTTGGGTTAATATTCTTTGAGGAAGGATATG
19376564 AGAATGTAGTAATGAATTCTATCATTACAGATAGAAAATATTTATTTTATTTGGTACTGAAACAA
586 AGAATGTAGTAATGAATTCTATCATTACAGATAGAAAATATTTATTTTATTTGGTACTGAAACAA
19376629 ACCAATATTATTCCAATATTTGGTGGTACAAAATTGGTCAAAAGAG
651 ACCAATATTATTCCAATATTTGGTGGTACAAAATTGGTCAAAAGAG
19376675 TAACGTGTTGATCAATAAAAAGAGTAACTAAATTGAGGAATTAGAAAGTTATTTTTATTATTGAC
1 TAACGTGTTGATCAATAAAAAGAGTAACTAAATTGAGGAATTAGAAAGTTATTTTTATTATTGAC
*
19376740 GATTCTCTTTTAATTATTTTTTTCTTTCAGTCGTCAAATGAGATCGATGCACTGTGGGTAACTAC
66 GATTCTCTTTTAATTATTTTTTTCTTTCAGTCGTCAATTGAGATCGATGCACTGTGGGTAACTAC
* *
19376805 TAGAGCCTTTACTTACTTAGTGCTCTTGATAATAGCCAAGGTGATAACGATGATGTTAAAGATTT
131 TAGAGCCTTTAATTACTTAGTGCTCTTGATAATAGCCAAGGTGATAACGATGATGTTAAAGATCT
*
19376870 TCAGGTATATTTCACTATGATTTATTTATTATACCATGTTTATTATAATTTGGGATTAATCATGA
196 TCAGGTATATTTCACTATGATTTATTTATTATACCATGTTTATTATAATTTGGGACTAATCATGA
* *
19376935 CTATATGAATAGATGGATTTTGATTTGAAATACACGCATGTTTGCAATGGTGATTATGGAATAAA
261 CAATATGAATAGATGGATTTTGATTTGAAATACACGCATGTTTGCGATGGTGATTATGGAATAAA
*
19377000 TAATCTAGTGGGACATTTATAAGTTCATCCTATTAAATTTGTTGCATTGAATGCAAATATAAAGA
326 TAATCTAGCGGGACATTTATAAGTTCATCCTATTAAATTTGTTGCATTGAATGCAAATATAAAGA
* *
19377065 AAATGAAAGATATGATCATGGACCACTAAAAGTGAGAACATAGTGATGAATAACAGAACAATGAG
391 AAATGAAAGATATGATCATGGACCACTAAAAGTGGGAACATAGTGATGAATAAGAGAACAATGAG
19377130 GGTTCTCAATAAACTCTTCAAAGGGCAAAGATAACTTATGTTATCAATGTGATATGAAAGGTTAT
456 GGTTCTCAATAAACTCTTCAAAGGGCAAAGATAACTTATGTTATCAATGTGATATGAAAGGTTAT
*
19377195 TGGCCACATATGTGGTGTATGTCCAAATATTTTGTTTGGGTTAATATTCTTTGAGGAAAGATATG
521 TGGCCACATATGTGGTGTATGTCCAAATATTTTGTTTGGGTTAATATTCTTTGAGGAAGGATATG
19377260 AGAATGTAGTAATGAATTCTATCATTACAGATAGAAAATATTTATTTTATTTGGTACTGAAACAA
586 AGAATGTAGTAATGAATTCTATCATTACAGATAGAAAATATTTATTTTATTTGGTACTGAAACAA
* *
19377325 ACCAATATTATTCCAATATTTGGTAGTGCAAAATTGGTCAAAAG
651 ACCAATATTATTCCAATATTTGGTGGTACAAAATTGGTCAAAAG
19377369 CGCCAAAAGC
Statistics
Matches: 1359, Mismatches: 29, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
694 51 0.04
695 173 0.13
696 1135 0.84
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (696 bp):
TAACGTGTTGATCAATAAAAAGAGTAACTAAATTGAGGAATTAGAAAGTTATTTTTATTATTGAC
GATTCTCTTTTAATTATTTTTTTCTTTCAGTCGTCAATTGAGATCGATGCACTGTGGGTAACTAC
TAGAGCCTTTAATTACTTAGTGCTCTTGATAATAGCCAAGGTGATAACGATGATGTTAAAGATCT
TCAGGTATATTTCACTATGATTTATTTATTATACCATGTTTATTATAATTTGGGACTAATCATGA
CAATATGAATAGATGGATTTTGATTTGAAATACACGCATGTTTGCGATGGTGATTATGGAATAAA
TAATCTAGCGGGACATTTATAAGTTCATCCTATTAAATTTGTTGCATTGAATGCAAATATAAAGA
AAATGAAAGATATGATCATGGACCACTAAAAGTGGGAACATAGTGATGAATAAGAGAACAATGAG
GGTTCTCAATAAACTCTTCAAAGGGCAAAGATAACTTATGTTATCAATGTGATATGAAAGGTTAT
TGGCCACATATGTGGTGTATGTCCAAATATTTTGTTTGGGTTAATATTCTTTGAGGAAGGATATG
AGAATGTAGTAATGAATTCTATCATTACAGATAGAAAATATTTATTTTATTTGGTACTGAAACAA
ACCAATATTATTCCAATATTTGGTGGTACAAAATTGGTCAAAAGAG
Found at i:19380970 original size:37 final size:37
Alignment explanation
Indices: 19380927--19381084 Score: 185
Period size: 37 Copynumber: 4.3 Consensus size: 37
19380917 CAAACTATGT
19380927 CTAGTAGGCTTTGTGCCAGTGTATTCAGGCTTTGTGC
1 CTAGTAGGCTTTGTGCCAGTGTATTCAGGCTTTGTGC
* ** * * * *
19380964 CAAGTAGG-TTTCGTGCTGGTGAATTCAGACTGTGTGT
1 CTAGTAGGCTTT-GTGCCAGTGTATTCAGGCTTTGTGC
*
19381001 CTAGTAGGCTTTGTGCCAGTGTAATCAGGCTTTGTGC
1 CTAGTAGGCTTTGTGCCAGTGTATTCAGGCTTTGTGC
* **
19381038 CTAGTAGGCTTCGTGCTGGTGTATTCAGGCTTTGTG-
1 CTAGTAGGCTTTGTGCCAGTGTATTCAGGCTTTGTGC
*
19381074 CTAGTAAGCTT
1 CTAGTAGGCTT
19381085 GGGGCCGATG
Statistics
Matches: 99, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
36 13 0.13
37 83 0.84
38 3 0.03
ACGTcount: A:0.16, C:0.17, G:0.30, T:0.37
Consensus pattern (37 bp):
CTAGTAGGCTTTGTGCCAGTGTATTCAGGCTTTGTGC
Found at i:19381020 original size:74 final size:73
Alignment explanation
Indices: 19380882--19381084 Score: 275
Period size: 74 Copynumber: 2.8 Consensus size: 73
19380872 TAAATGTTCG
* * * * *
19380882 GGCTATGTGCCTAGTAAGCTTCGTACTGGTGAATTCAAAC-TATGTCTAGTAGGCTTTGTGCCAG
1 GGCTTTGTGCCTAGTAGGCTTCGTGCTGGTGAATTCAGACTTGTGTCTAGTAGGCTTTGTGCCAG
*
19380946 TGTATTCA
66 TGTAATCA
* *
19380954 GGCTTTGTGCCAAGTAGGTTTCGTGCTGGTGAATTCAGACTGTGTGTCTAGTAGGCTTTGTGCCA
1 GGCTTTGTGCCTAGTAGGCTTCGTGCTGGTGAATTCAGACT-TGTGTCTAGTAGGCTTTGTGCCA
19381019 GTGTAATCA
65 GTGTAATCA
* * *
19381028 GGCTTTGTGCCTAGTAGGCTTCGTGCTGGTGTATTCAGGCTT-TGTGCTAGTAAGCTT
1 GGCTTTGTGCCTAGTAGGCTTCGTGCTGGTGAATTCAGACTTGTGT-CTAGTAGGCTT
19381085 GGGGCCGATG
Statistics
Matches: 115, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
72 37 0.32
73 11 0.10
74 67 0.58
ACGTcount: A:0.18, C:0.17, G:0.29, T:0.36
Consensus pattern (73 bp):
GGCTTTGTGCCTAGTAGGCTTCGTGCTGGTGAATTCAGACTTGTGTCTAGTAGGCTTTGTGCCAG
TGTAATCA
Found at i:19391489 original size:18 final size:18
Alignment explanation
Indices: 19391445--19391497 Score: 56
Period size: 17 Copynumber: 3.0 Consensus size: 18
19391435 CAAAAACTTC
*
19391445 AACTCAAACAAAAA-AAA
1 AACTTAAACAAAAACAAA
*
19391462 TACTTAAACAAAAACACAA
1 AACTTAAACAAAAACA-AA
*
19391481 AACTT-AACAAGAACAAA
1 AACTTAAACAAAAACAAA
19391498 TTTTTGGCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 14 0.47
18 10 0.33
19 6 0.20
ACGTcount: A:0.68, C:0.19, G:0.02, T:0.11
Consensus pattern (18 bp):
AACTTAAACAAAAACAAA
Found at i:19391665 original size:18 final size:18
Alignment explanation
Indices: 19391642--19391676 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
19391632 CCTGAAACAC
19391642 TAACAACACCCATTAAAA
1 TAACAACACCCATTAAAA
*
19391660 TAACAACGCCCATTAAA
1 TAACAACACCCATTAAA
19391677 CACCGATGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.29, G:0.03, T:0.17
Consensus pattern (18 bp):
TAACAACACCCATTAAAA
Found at i:19403559 original size:51 final size:51
Alignment explanation
Indices: 19403401--19403586 Score: 241
Period size: 51 Copynumber: 3.6 Consensus size: 51
19403391 GCTATAAACG
* *
19403401 AAAGAGTCTGATGACTAAGTGTCATCGTGATTAAATGAATCCTTTAC-AGATT
1 AAAG-GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGA-ATT
* * *
19403453 AATGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATC
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGAATT
* *
19403504 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCATGACGAATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGAATT
** *
19403555 AAAGGTTTGATGAC-AATATGTCATCGTGAGTA
1 AAAGGTCCGATGACTAA-GTGTCATCGTGAGTA
19403587 TTAAATGAAA
Statistics
Matches: 119, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
50 2 0.02
51 114 0.96
52 3 0.03
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGAATT
Found at i:19405242 original size:77 final size:76
Alignment explanation
Indices: 19405116--19405393 Score: 329
Period size: 75 Copynumber: 3.7 Consensus size: 76
19405106 TCAAAAAAAA
*
19405116 ATTCTATTGTATTTTACATCAA-AA-ACATACTTATTTACAATCTACGAAAAAATTAAAAAAATT
1 ATTCTATTGTATTTTACATCAATAATATATACTTATTTACAATCTACGAAAAAATT-AAAAAATT
*
19405179 TGTTTGTTTTGC
65 TGTTTGTATTGC
* *
19405191 ATTCTATTGTATTTTATATCAATAATATATACTTATTTACAATCTATGAAAAAATT-AAAAATTT
1 ATTCTATTGTATTTTACATCAATAATATATACTTATTTACAATCTACGAAAAAATTAAAAAATTT
19405255 GTTTGTATTGC
66 GTTTGTATTGC
* *
19405266 ATTCTATTGTATGTGTT-C-TCAATAAT-T-TACTTATTTACAATCAACGAAAAAAATGAAAAAA
1 ATTCTATTGTAT-T-TTACATCAATAATATATACTTATTTACAATCTACG-AAAAAATTAAAAAA
* *
19405327 TTTGTTTATATTGT
63 TTTGTTTGTATTGC
* * * * * *
19405341 ATTCAACTGTACTTTACAT-AAAAATTATATACTTATTTACAATTTACCAAAAA
1 ATTCTATTGTATTTTACATCAATAA-TATATACTTATTTACAATCTACGAAAAA
19405394 CTGAGAAGCA
Statistics
Matches: 175, Mismatches: 17, Indels: 21
0.82 0.08 0.10
Matches are distributed among these distances:
73 19 0.11
74 14 0.08
75 87 0.50
76 9 0.05
77 46 0.26
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.42
Consensus pattern (76 bp):
ATTCTATTGTATTTTACATCAATAATATATACTTATTTACAATCTACGAAAAAATTAAAAAATTT
GTTTGTATTGC
Found at i:19408065 original size:3 final size:3
Alignment explanation
Indices: 19408059--19408100 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
19408049 ATTATTTATT
19408059 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
19408101 TTATTATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:19408105 original size:3 final size:3
Alignment explanation
Indices: 19408099--19408150 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
19408089 ATAATAATAA
19408099 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
19408147 TAT T
1 TAT T
19408151 TTGGATTTTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:19408260 original size:23 final size:23
Alignment explanation
Indices: 19408208--19408264 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
19408198 GGTTGTAAAT
* *
19408208 ATAATTTA-TTTTGGGACTTTTG
1 ATAATTTATTTTTGGGACGTTTA
*
19408230 ATATTTTATTTTTGGGA-GTTTA
1 ATAATTTATTTTTGGGACGTTTA
19408252 ATTAATTTATTTT
1 A-TAATTTATTTT
19408265 ATTATTAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.25, C:0.02, G:0.14, T:0.60
Consensus pattern (23 bp):
ATAATTTATTTTTGGGACGTTTA
Found at i:19413057 original size:8 final size:8
Alignment explanation
Indices: 19413044--19413068 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
19413034 GGAAGCTGAG
19413044 GGCCGGTA
1 GGCCGGTA
19413052 GGCCGGTA
1 GGCCGGTA
19413060 GGCCGGTA
1 GGCCGGTA
19413068 G
1 G
19413069 AGCATCTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.52, T:0.12
Consensus pattern (8 bp):
GGCCGGTA
Found at i:19414080 original size:44 final size:45
Alignment explanation
Indices: 19413996--19414104 Score: 132
Period size: 44 Copynumber: 2.4 Consensus size: 45
19413986 AAACAATCAA
*
19413996 TAAATAACTAACTCATTTAATGCTTCTACGCACATATATTACAAGCACT
1 TAAATAACTAACTCAATTAATGCTTCT---CACA-ATATTACAAGCACT
19414045 TAAATAACTAACTCAATTAATGCCTTCT-AC-ATATTACAAGCACT
1 TAAATAACTAACTCAATTAATG-CTTCTCACAATATTACAAGCACT
* *
19414089 TAAATAATTAAATCAA
1 TAAATAACTAACTCAA
19414105 AATTTAAATC
Statistics
Matches: 56, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
44 28 0.50
46 2 0.04
49 21 0.38
50 5 0.09
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.32
Consensus pattern (45 bp):
TAAATAACTAACTCAATTAATGCTTCTCACAATATTACAAGCACT
Found at i:19415176 original size:585 final size:571
Alignment explanation
Indices: 19414007--19416818 Score: 2433
Period size: 585 Copynumber: 4.9 Consensus size: 571
19413997 AAATAACTAA
*
19414007 CTCATTTAATGCTTCTACGCACATATATTACAAGCACTTAAATAACTAACTCAATTAATGCCTTC
1 CTCATTTAATGCTTCTACACACATATATTACAAGCACTTAAATAACTAACTCAATTAATGCCTTC
* * * * *
19414072 TACATATTACAAGCACTTAAATAATTAAATCAAAATTTAAATCAATTAATTAACAAATAAATCAA
66 TACATATCACAAGCACTTAAATAACTAACTCAAATTTTAAATCAATTAATTAACAAATAAATCTA
* * * * * * **
19414137 AAAATTCCAAATAACGATCATCACTATAACAATAACCATATTCAATCTTTTATTT-AAAAAATTC
131 AAAATTCCAAATAAAGATCATCACCATAACAATAACTACATTCAATTTTTTTTTTAAAAAAAAAC
* ** * * * *
19414201 -TAGATTCAATTAAAAA-AAAATGCTAAACTGAAAAATCAAGAAAGATCGAAACTAACAGATCAA
196 TTAGATCCAATTAAAAAGAAAACACTAAATTGAAAAATCAAAAAAGACCGAAACTAAAAGATCAA
* * *
19414264 AGCAAAGACATTTGATTAATGCTTATTTGTAAAAGCAAGAATTATAATGAAATAAAAGAAGTGAA
261 AGCAAAGACATTTGATTAATGCTTATTTGTAAAAACAAGAATTATAATAAAATAGAAGAAGTGAA
* * ** * *
19414329 AACCCTAAAATTTTACCGGTAGAGAAGAGATCCGCGAGAAAGAGAGAGCATCGAGGGAGATCGAG
326 AACCCTAGAATTTTACCGGTAGAGAAGAGAGCCGCGAGCGAGAGAGAGCACCGAGGGAAATCGAG
* * *
19414394 TCAACAACCAAGAACTGAAAGCGGTAAAAAGTAGAGTGAATATTACGCATGACGCCTGTCTTTTA
391 TCAACAGCCAAGAACTGAAAGCAGCAAAAAGTAGAGTGAATATTACGCATGACGCCTGTCTTTTA
* * *
19414459 TAATTCCAACTTTTTGCTACATTTTTTCTTTTAATTTAGAAATAAAG-TATCTTTTCCTACCATT
456 TAATCCCAACTTTTTGCTACATTTTTTCTTTTAA-TTAG---TAAAGTTATATTTT--TA-C-TA
* * * * * * *
19414523 ATTCATAT-G-TCATCTGAT-TTGTAATTAGTAAAAGTTTTACGATTTTGCTTTAATTATATGG
513 ATT-ATATGGTTCATTTAATGTTTTAA-TA--AATA-TTTTACGATTTTACTTTAAATATATAG
* * * *
19414584 TTCATTTAATGTCTTCTACACACACATATATTACAAGCACTTAAATAACTAATTCAATTAACGTC
1 CTCATTTAATG-CTTCT--ACACACATATATTACAAGCACTTAAATAACTAACTCAATTAATGCC
* *
19414649 TTCTACATATCACAAGCACTTAAATAATTAACTCAGATTTTAAATCAATTAATTAACAAATAAAT
63 TTCTACATATCACAAGCACTTAAATAACTAACTCAAATTTTAAATCAATTAATTAACAAATAAAT
* *
19414714 TTAAAAATTTCAAATAAAGATCATCGACCATAACAATAACTACATTCAATTTTTTCTTTTAAAAA
128 CTAAAAATTCCAAATAAAGATCATC-ACCATAACAATAACTACATTCAATTTTTT-TTTTAAAAA
** *
19414779 AAAACTTAGATCCAATTAAAAAGAAAACACTAAATTGAAAAATCAAGGAAGACCGAAACTAAAAA
191 AAAACTTAGATCCAATTAAAAAGAAAACACTAAATTGAAAAATCAAAAAAGACCGAAACTAAAAG
* * *
19414844 ATCTAAGCAAAGACCTTTGATTAATGCTTATTTGTAAAAACAAGAATTATAATAAAATAGAAGAG
256 ATCAAAGCAAAGACATTTGATTAATGCTTATTTGTAAAAACAAGAATTATAATAAAATAGAAGAA
* * ** * *
19414909 GTGAAAACCCTAGAATTTTATCGGTAGAGAAGAGAGCTGCGAGCGAGAGAGAAAATCGAGAGAAA
321 GTGAAAACCCTAGAATTTTACCGGTAGAGAAGAGAGCCGCGAGCGAGAGAGAGCACCGAGGGAAA
* * * *
19414974 TTGAGTCAACAGCCAAGAACTGAAAGCAGCGAAAAGTAGAGTGAATATTAAGCATGATGCCTGTC
386 TCGAGTCAACAGCCAAGAACTGAAAGCAGCAAAAAGTAGAGTGAATATTACGCATGACGCCTGTC
* *
19415039 TTTTATAATCCCAACTTTTTGTTACGTTTTTTCTTTTGTAATTAGTTAAAGCTTTATATGATTTT
451 TTTTATAATCCCAACTTTTTGCTACATTTTTTC-TTT-TAATTAG-TAAAG--TTATAT--TTTT
* * ***
19415104 ACTAATTATATGGTTCATTTAATGCCTTTTACACACACATATATTAC-A-AACAC-TTAAATA-A
509 ACTAATTATATGGTTCATTTAATG--TTTTA-ATA-A-ATATTTTACGATTTTACTTTAAATATA
19415165 CTAG
569 -TAG
* * * * *
19415169 CTCATTTAATGC--CTTC-CAC--ATATTATAAGGACTTAAATAATTAACTC-A--AA----TTA
1 CTCATTTAATGCTTCTACACACATATATTACAAGCACTTAAATAACTAACTCAATTAATGCCTTC
*
19415222 T-C-TA-C-CAA--A---AAA-AACTAACTCAAATTTTAAATCAATTAATTAGCAAATAAATCTA
66 TACATATCACAAGCACTTAAATAACTAACTCAAATTTTAAATCAATTAATTAACAAATAAATCTA
19415277 AAAATTCCAAATAAAG---AT---CATAACAATAACTACATTCAATTTTTTGTTTTAAAAAAAAA
131 AAAATTCCAAATAAAGATCATCACCATAACAATAACTACATTCAATTTTTT-TTTTAAAAAAAAA
* * * *
19415336 -TCTAGTTCCAATTAAAAAGAAAACATTAAATTGAAAAATCAAAGAAGATCGAAACT---A-A-C
195 CT-TAGATCCAATTAAAAAGAAAACACTAAATTGAAAAATCAAAAAAGACCGAAACTAAAAGATC
* * *
19415395 ATATCAAAGACATTTGATTAATGCTTTTTTTTGTAAAAACAAGAATTATAATAAAATAGAAGAAG
259 AAAGCAAAGACATTTGATTAATGC--TTATTTGTAAAAACAAGAATTATAATAAAATAGAAGAAG
* * * *
19415460 TGAAAACCCTAGAATTTTACCAGTAGAGAAGAGAGTCGCGAGCGAGAGATAGCACCGAGGGAGAT
322 TGAAAACCCTAGAATTTTACCGGTAGAGAAGAGAGCCGCGAGCGAGAGAGAGCACCGAGGGAAAT
* * * * * * * * *
19415525 CGAGTTAACATCAAAAAATTGAAAGCAGCGAAAAGTAGAGTGAATATTACGCATGGCACCTATCT
387 CGAGTCAACAGCCAAGAACTGAAAGCAGCAAAAAGTAGAGTGAATATTACGCATGACGCCTGTCT
** * * * *
19415590 TTTATAATCCCAACTTTTTGCTATGTTTTATCTTTTAATTCCG-AAA-TAAAATATCTTTTCCTA
452 TTTATAATCCCAACTTTTTGCTACATTTTTTCTTTTAATT-AGTAAAGT--TATAT-TTTTACTA
* * * * * *
19415653 CCATTAT-TCGTATCTCATCTGATTGTAATTAGTTAAAT-TTTGATACGATTTTACTTTAATTAT
513 --ATTATAT-G-GT-TCAT-TTAATGT-TTTA-ATAAATATTT--TACGATTTTACTTTAAATAT
*
19415716 ATGG
568 ATAG
* * * *
19415720 TTCATTTAATGCCTTTTACACACATATATTACAAGCACTTAAATAACAAACTCATTTAATGCCTT
1 CTCATTTAATG-CTTCTACACACATATATTACAAGCACTTAAATAACTAACTCAATTAATGCCTT
* * *
19415785 CTACATATGACAAGCACTTAAATAACTAGCTCAAATTTTAAATCAATTAAATAACAAATAAATCT
65 CTACATATCACAAGCACTTAAATAACTAACTCAAATTTTAAATCAATTAATTAACAAATAAATCT
* * *
19415850 AAAAATTCCAAATAAAGATCATCGGCCATAACAATAACTAAATTC-A---TTTTTTTAAAAGAAA
130 AAAAATTCCAAATAAAGATCATC-ACCATAACAATAACTACATTCAATTTTTTTTTTAAAAAAAA
* * * * ** *
19415911 ACCTAGATCCAATTAAAAAGAAAACGCTAAAGTGAAAAATTAAAAAAGACTAAAACTAACAGATC
194 ACTTAGATCCAATTAAAAAGAAAACACTAAATTGAAAAATCAAAAAAGACCGAAACTAAAAGATC
* * *
19415976 AAAGCAAAGACCTTTGATTAATAG-TTATTTGTAAAAGCAAGAATTATAATGAAATAGAAGAAGT
259 AAAGCAAAGACATTTGATTAAT-GCTTATTTGTAAAAACAAGAATTATAATAAAATAGAAGAAGT
* *
19416040 G-AAATCCTAGAATTTTACCGGTAGAGAAAAGAGCCGCGAGCGAGAGAGAGCACCGA-GGAAGAT
323 GAAAACCCTAGAATTTTACCGGTAGAGAAGAGAGCCGCGAGCGAGAGAGAGCACCGAGGGAA-AT
* * * **
19416103 CGAGTCAACAGCCAAGAATTGAAAGCAACAAAAAGTAGAGTGAATATTACGCACGGTGCCTGTCT
387 CGAGTCAACAGCCAAGAACTGAAAGCAGCAAAAAGTAGAGTGAATATTACGCATGACGCCTGTCT
* * * * *
19416168 TTTATAAT-CCAACTTTTTGCTA-ATTTTTTCTTTTGATTCCGAAATAAA-ATATGTTTTTCCTA
452 TTTATAATCCCAACTTTTTGCTACATTTTTTCTTTTAATT----AGTAAAGTTATATTTTTACTA
* * * * * * *
19416230 CCATTAT-TCGTATCTCATCTTATTTGTAATTAGTTAATGTTTTATACGATTTTACTTTAATTAT
513 --ATTATAT-G-GT-TCAT-TTA-ATGT-TTTAATAAAT-ATTT-TACGATTTTACTTTAAATAT
*
19416294 ATGG
568 ATAG
*
19416298 TTCATTTAATGCCTTCTACACACACATATATTACAAGCACTTAAATAATTAACTCATTTAATGCC
1 CTCATTTAATG-CTTCT--ACACACATATATTACAAGCACTT--A-AA-TAA--C---TAA---C
* * *
19416363 TTCCACATATTACAAGCACTTAAATAAACTACATATTACAAGTACTTAAATAACTAACTCAAATT
51 -T---CA-ATTA-ATGC-C-T---T---CTACATATCACAAGCACTTAAATAACTAACTCAAATT
* * * *
19416428 TTAAATCAATTAGTTAACAAATATATCTAAAAATTCCAAATGAAGATCATCGACTATAACAATAA
102 TTAAATCAATTAATTAACAAATAAATCTAAAAATTCCAAATAAAGATCATC-ACCATAACAATAA
* * * * * * *
19416493 CTATATCCAATTTTGTGTTTAAAAAAAGAAAATCTAAATCCAATTAAAAAGAAAA-AGCTAAACT
166 CTACATTCAATTTT-TTTTTTAAAAAA-AAACT-TAGATCCAATTAAAAAGAAAACA-CTAAATT
* * * * * *
19416557 GAAAAATCAAGAAAGACTGAAACTAACAA-ATCAAAACAAAGACCTTTGATTAAT-TTTTTTTGT
227 GAAAAATCAAAAAAGACCGAAACTAA-AAGATCAAAGCAAAGACATTTGATTAATGCTTATTTGT
* * * * *
19416620 AAAAACAAGAATTATAATGAAATAGAAGGAGTGAAAA-CCTAAAATTTTACCGGTAAAGAAGAAA
291 AAAAACAAGAATTATAATAAAATAGAAGAAGTGAAAACCCTAGAATTTTACCGGTAGAGAAGAGA
* ** * ** ** * ** * * * *
19416684 GTCGTAAACGAGAGAGAGCACTAAAAGAGATAAAGTCAACAG-CAAAAACTAAAAGCAACGAAAA
356 GCCGCGAGCGAGAGAGAGCACCGAGGGAAATCGAGTCAACAGCCAAGAACTGAAAGCAGCAAAAA
* * * * * * * *
19416748 GTAGAGTGAATATTACGCACGACACTTATCTTTTATAATTCCAATTTTTTTCTACGTTTTTTCTT
421 GTAGAGTGAATATTACGCATGACGCCTGTCTTTTATAATCCCAACTTTTTGCTACATTTTTTCTT
19416813 TTAATT
486 TTAATT
19416819 CCTGAAATAA
Statistics
Matches: 1855, Mismatches: 251, Indels: 222
0.80 0.11 0.10
Matches are distributed among these distances:
544 1 0.00
545 7 0.00
546 7 0.00
547 11 0.01
548 32 0.02
549 14 0.01
550 182 0.10
551 18 0.01
552 3 0.00
553 90 0.05
554 2 0.00
555 3 0.00
557 26 0.01
560 56 0.03
561 3 0.00
564 4 0.00
565 1 0.00
566 5 0.00
567 1 0.00
568 5 0.00
569 1 0.00
570 4 0.00
573 3 0.00
574 58 0.03
576 71 0.04
577 89 0.05
578 173 0.09
579 45 0.02
580 153 0.08
581 63 0.03
582 7 0.00
583 9 0.00
584 29 0.02
585 260 0.14
586 17 0.01
587 10 0.01
588 6 0.00
589 12 0.01
590 1 0.00
592 1 0.00
593 1 0.00
596 2 0.00
597 3 0.00
598 3 0.00
599 1 0.00
600 1 0.00
603 1 0.00
606 99 0.05
607 1 0.00
610 1 0.00
611 61 0.03
612 105 0.06
613 92 0.05
614 1 0.00
ACGTcount: A:0.43, C:0.15, G:0.12, T:0.31
Consensus pattern (571 bp):
CTCATTTAATGCTTCTACACACATATATTACAAGCACTTAAATAACTAACTCAATTAATGCCTTC
TACATATCACAAGCACTTAAATAACTAACTCAAATTTTAAATCAATTAATTAACAAATAAATCTA
AAAATTCCAAATAAAGATCATCACCATAACAATAACTACATTCAATTTTTTTTTTAAAAAAAAAC
TTAGATCCAATTAAAAAGAAAACACTAAATTGAAAAATCAAAAAAGACCGAAACTAAAAGATCAA
AGCAAAGACATTTGATTAATGCTTATTTGTAAAAACAAGAATTATAATAAAATAGAAGAAGTGAA
AACCCTAGAATTTTACCGGTAGAGAAGAGAGCCGCGAGCGAGAGAGAGCACCGAGGGAAATCGAG
TCAACAGCCAAGAACTGAAAGCAGCAAAAAGTAGAGTGAATATTACGCATGACGCCTGTCTTTTA
TAATCCCAACTTTTTGCTACATTTTTTCTTTTAATTAGTAAAGTTATATTTTTACTAATTATATG
GTTCATTTAATGTTTTAATAAATATTTTACGATTTTACTTTAAATATATAG
Found at i:19421361 original size:51 final size:52
Alignment explanation
Indices: 19421241--19421378 Score: 174
Period size: 51 Copynumber: 2.6 Consensus size: 52
19421231 ATTTCATTTA
* *
19421241 ATACTCACGATGACA-TATAGTCACCGGACCTTTTATTCCATATAGGAATTCAT
1 ATACTCACGATGACACT-TAGTCATCGGACC-TTTAATCCATATAGGAATTCAT
* *
19421294 ATACTCACGATAACACTGAGTCATCGGACCTTTAATCCATCAT-GG-ATTCAT
1 ATACTCACGATGACACTTAGTCATCGGACCTTTAATCCAT-ATAGGAATTCAT
*
19421345 TTACTCACGATGACACTTAGTCATCGGATCCTTT
1 ATACTCACGATGACACTTAGTCATCGGA-CCTTT
19421379 CATTTATAGC
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
51 31 0.41
52 16 0.21
53 27 0.36
54 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.32
Consensus pattern (52 bp):
ATACTCACGATGACACTTAGTCATCGGACCTTTAATCCATATAGGAATTCAT
Found at i:19451085 original size:5 final size:5
Alignment explanation
Indices: 19451062--19451100 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
19451052 AGATTAAAAG
* **
19451062 AAATT AAATA AAAGC AAATA AAATA AAATA AAATA AAAT
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAAT
19451101 CGTATCTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:19451085 original size:15 final size:14
Alignment explanation
Indices: 19451056--19451100 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
19451046 AAGAATAGAT
*
19451056 TAAAAGAAATTAAA
1 TAAAAGAAATAAAA
19451070 TAAAAGCAAATAAAA
1 TAAAAG-AAATAAAA
*
19451085 TAAAATAAAATAAAA
1 TAAAA-GAAATAAAA
19451100 T
1 T
19451101 CGTATCTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 6 0.22
15 21 0.78
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.20
Consensus pattern (14 bp):
TAAAAGAAATAAAA
Found at i:19454236 original size:80 final size:80
Alignment explanation
Indices: 19454103--19454254 Score: 223
Period size: 80 Copynumber: 1.9 Consensus size: 80
19454093 GTGCAATCCA
* * * * *
19454103 TTGGTTAATCCAACTAGAGTTGGGCTCACTTATCGCGGTTTATCCGCCAGGCACTAGGTGCCATG
1 TTGGTTAATCCAACTAGAGCTAGGCTCACTTATCGCGGTCTAACCGCCAGGCACCAGGTGCCATG
19454168 AATTGACAGACTTTG
66 AATTGACAGACTTTG
* * * *
19454183 TTGGTTATTCCAACTAGAGCTAGGCTCACTTATCGCGGTCTAACTGCTAGGCACCGGGTGCCATG
1 TTGGTTAATCCAACTAGAGCTAGGCTCACTTATCGCGGTCTAACCGCCAGGCACCAGGTGCCATG
19454248 AATTGAC
66 AATTGAC
19454255 GAAAATTATT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 63 1.00
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (80 bp):
TTGGTTAATCCAACTAGAGCTAGGCTCACTTATCGCGGTCTAACCGCCAGGCACCAGGTGCCATG
AATTGACAGACTTTG
Found at i:19454243 original size:147 final size:146
Alignment explanation
Indices: 19453968--19454243 Score: 347
Period size: 147 Copynumber: 1.9 Consensus size: 146
19453958 AGTTTAACTG
* * * * *
19453968 ACTAGAGCTAGGCTCACTTTCACAGTTTATTCGCTAGGCACTGGGTGCCAGGATTTGACGGATTA
1 ACTAGAGCTAGGCTCACTTTCACAGTTTATCCGCCAGGCACTAGGTGCCAGGAATTGACAGA-TA
* * * * *
19454033 TTTGTTGGTTAATCTAACTAGAGTTAGGCTCACTTCTGCGGTTTAACCGCTAGGCACTAGGTGCA
65 TTTGTTGGTTAATCCAACTAGAGCTAGGCTCACTTATGCGGTCTAACCGCTAGGCACCAGGTGCA
19454098 ATCCATTGGTTAATCCA
130 ATCCATTGGTTAATCCA
* * * * * *
19454115 ACTAGAGTTGGGCTCACTTATCGCGGTTTATCCGCCAGGCACTAGGTGCCATGAATTGACAGA-C
1 ACTAGAGCTAGGCTCACTT-TCACAGTTTATCCGCCAGGCACTAGGTGCCAGGAATTGACAGATA
* * *
19454179 TTTGTTGGTTATTCCAACTAGAGCTAGGCTCACTTATCGCGGTCTAACTGCTAGGCACCGGGTGC
65 TTTGTTGGTTAATCCAACTAGAGCTAGGCTCACTTAT-GCGGTCTAACCGCTAGGCACCAGGTGC
19454244 CATGAATTGA
Statistics
Matches: 108, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
146 33 0.31
147 40 0.37
148 35 0.32
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (146 bp):
ACTAGAGCTAGGCTCACTTTCACAGTTTATCCGCCAGGCACTAGGTGCCAGGAATTGACAGATAT
TTGTTGGTTAATCCAACTAGAGCTAGGCTCACTTATGCGGTCTAACCGCTAGGCACCAGGTGCAA
TCCATTGGTTAATCCA
Found at i:19457038 original size:32 final size:32
Alignment explanation
Indices: 19456997--19457374 Score: 308
Period size: 32 Copynumber: 11.8 Consensus size: 32
19456987 CATGAAACAA
*
19456997 TGTTCACAGATTGATAACTCCTACGAGCTTAT
1 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
19457029 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
1 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
* * *
19457061 TGTTCACAAATTGATGGCTCATACGAGCTTAT
1 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
* * * *
19457093 TTTTCATAGATTGTTAGCTCCTATGAGCTTAT
1 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
* * *
19457125 TGTTCATAGATTTATAGCTCCTACGAACTTAT
1 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
* * * * *
19457157 TGTTCATAGATTGACAGCTTCTATGAGCTTAC
1 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
* * * ** *
19457189 TGTTCACAGGTTGATAGCTCTTATGAGCACAC
1 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
* * * * * * *
19457221 TATTCATAGATTAATAGCTCTTATGAGCATAC
1 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
* * * * * *
19457253 TGTTCATAGACTGATAGCTCTTATGAGCATAG
1 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
* * * * * * *
19457285 TATTCATAGATTAATAGCTCTTATGAGCATAC
1 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
* * *
19457317 TGTTCATAGATTGATAGCTCTTACGAG-TACAT
1 TGTTCACAGATTGATAGCTCCTACGAGCT-TAT
* * *
19457349 TGTTCATAGATTAATAGCTCATACGA
1 TGTTCACAGATTGATAGCTCCTACGA
19457375 ATATACTGGG
Statistics
Matches: 295, Mismatches: 50, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
32 295 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTTCACAGATTGATAGCTCCTACGAGCTTAT
Found at i:19457104 original size:64 final size:64
Alignment explanation
Indices: 19456997--19457368 Score: 386
Period size: 64 Copynumber: 5.8 Consensus size: 64
19456987 CATGAAACAA
* * * * * *
19456997 TGTTCACAGATTGATAACTCCTACGAGCTTATTGTTCACAGATTGATAGCTCCTACGAGCTTAT
1 TGTTCACAGATTGATAGCTCTTACGAGCTTATTGTTCATAGATTAATAGCTCCTATGAGCTTAC
* * * * ** *
19457061 TGTTCACAAATTGATGGCTCATACGAGCTTATTTTTCATAGATTGTTAGCTCCTATGAGCTTAT
1 TGTTCACAGATTGATAGCTCTTACGAGCTTATTGTTCATAGATTAATAGCTCCTATGAGCTTAC
* * * * * * *
19457125 TGTTCATAGATTTATAGCTCCTACGAACTTATTGTTCATAGATTGACAGCTTCTATGAGCTTAC
1 TGTTCACAGATTGATAGCTCTTACGAGCTTATTGTTCATAGATTAATAGCTCCTATGAGCTTAC
* * ** * * * *
19457189 TGTTCACAGGTTGATAGCTCTTATGAGCACACTATTCATAGATTAATAGCTCTTATGAGCATAC
1 TGTTCACAGATTGATAGCTCTTACGAGCTTATTGTTCATAGATTAATAGCTCCTATGAGCTTAC
* * * * * * * *
19457253 TGTTCATAGACTGATAGCTCTTATGAGCATAGTATTCATAGATTAATAGCTCTTATGAGCATAC
1 TGTTCACAGATTGATAGCTCTTACGAGCTTATTGTTCATAGATTAATAGCTCCTATGAGCTTAC
* *
19457317 TGTTCATAGATTGATAGCTCTTACGAG-TACATTGTTCATAGATTAATAGCTC
1 TGTTCACAGATTGATAGCTCTTACGAGCT-TATTGTTCATAGATTAATAGCTC
19457369 ATACGAATAT
Statistics
Matches: 262, Mismatches: 45, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
64 262 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (64 bp):
TGTTCACAGATTGATAGCTCTTACGAGCTTATTGTTCATAGATTAATAGCTCCTATGAGCTTAC
Found at i:19457170 original size:96 final size:96
Alignment explanation
Indices: 19456999--19457374 Score: 353
Period size: 96 Copynumber: 3.9 Consensus size: 96
19456989 TGAAACAATG
* * * * * *
19456999 TTCACAGATTGATAACTCCTACGAGCTTATTGTTCACAGATTGATAGCTCCTACGAGCTTATTGT
1 TTCACAGATTGATAGCTCCTATGAGCATACTGTTCATAGATTGATAGCTCCTACGAACTTATTGT
* * * * *
19457064 TCACAAATTGATGGCTCATACGAGCTTATTT
66 TCATAGATTGATAGCTCATACGAGCTTACTA
* * * * *
19457095 TTCATAGATTGTTAGCTCCTATGAGCTTATTGTTCATAGATTTATAGCTCCTACGAACTTATTGT
1 TTCACAGATTGATAGCTCCTATGAGCATACTGTTCATAGATTGATAGCTCCTACGAACTTATTGT
* * *
19457160 TCATAGATTGACAGCTTC-TATGAGCTTACTG
66 TCATAGATTGATAGC-TCATACGAGCTTACTA
* * * * * * * * * *
19457191 TTCACAGGTTGATAGCTCTTATGAGCACACTATTCATAGATTAATAGCTCTTATGAGCATACTGT
1 TTCACAGATTGATAGCTCCTATGAGCATACTGTTCATAGATTGATAGCTCCTACGAACTTATTGT
* * * * *
19457256 TCATAGACTGATAGCTCTTATGAGCATAGTA
66 TCATAGATTGATAGCTCATACGAGCTTACTA
* * * *
19457287 TTCATAGATTAATAGCTCTTATGAGCATACTGTTCATAGATTGATAGCTCTTACGAGTAC--ATT
1 TTCACAGATTGATAGCTCCTATGAGCATACTGTTCATAGATTGATAGCTCCTACGA--ACTTATT
*
19457350 GTTCATAGATTAATAGCTCATACGA
64 GTTCATAGATTGATAGCTCATACGA
19457375 ATATACTGGG
Statistics
Matches: 230, Mismatches: 46, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
95 2 0.01
96 225 0.98
97 2 0.01
98 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (96 bp):
TTCACAGATTGATAGCTCCTATGAGCATACTGTTCATAGATTGATAGCTCCTACGAACTTATTGT
TCATAGATTGATAGCTCATACGAGCTTACTA
Found at i:19458370 original size:21 final size:21
Alignment explanation
Indices: 19458346--19458388 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
19458336 CTACAAAAAG
19458346 AATTCATAC-TACTACCGATAC
1 AATT-ATACTTACTACCGATAC
* *
19458367 AATTATTCTTACTATCGATAC
1 AATTATACTTACTACCGATAC
19458388 A
1 A
19458389 TCAATACCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (21 bp):
AATTATACTTACTACCGATAC
Found at i:19460438 original size:16 final size:15
Alignment explanation
Indices: 19460412--19460441 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
19460402 GCCATTAACT
19460412 TTTAACCTTTTTCAA
1 TTTAACCTTTTTCAA
19460427 TTTAATCCTTTTTCA
1 TTTAA-CCTTTTTCA
19460442 TTAATTAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTAACCTTTTTCAA
Found at i:19462526 original size:10 final size:9
Alignment explanation
Indices: 19462480--19462527 Score: 51
Period size: 10 Copynumber: 5.0 Consensus size: 9
19462470 CAAGCAATCA
19462480 TTTTTTCTTC
1 TTTTTT-TTC
* *
19462490 TTTTTCTCC
1 TTTTTTTTC
19462499 TTTTTTTCTC
1 TTTTTTT-TC
19462509 TTTTTTTTC
1 TTTTTTTTC
19462518 TTTTCTTTTC
1 TTTT-TTTTC
19462528 GAACCTTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 14 0.44
10 18 0.56
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:19462526 original size:11 final size:11
Alignment explanation
Indices: 19462480--19462527 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
19462470 CAAGCAATCA
*
19462480 TTTTT-TCTTC
1 TTTTTCTCTTT
*
19462490 TTTTTCTCCTT
1 TTTTTCTCTTT
19462501 TTTTTCTCTTT
1 TTTTTCTCTTT
19462512 TTTTTCT-TTT
1 TTTTTCTCTTT
*
19462522 CTTTTC
1 TTTTTC
19462528 GAACCTTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
10 13 0.39
11 20 0.61
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTCTCTTT
Found at i:19463480 original size:6 final size:6
Alignment explanation
Indices: 19463469--19463525 Score: 60
Period size: 6 Copynumber: 9.2 Consensus size: 6
19463459 TCTAAAAAAG
* * * *
19463469 AAATAA AAATAA TATTAA TAAATAA AAATTTA AAATAA AAATAA AGATAA
1 AAATAA AAATAA AAATAA -AAATAA AAA-TAA AAATAA AAATAA AAATAA
19463519 AAATAA A
1 AAATAA A
19463526 TAGAAATATA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
6 32 0.78
7 9 0.22
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.25
Consensus pattern (6 bp):
AAATAA
Found at i:19463518 original size:12 final size:11
Alignment explanation
Indices: 19463488--19463538 Score: 50
Period size: 12 Copynumber: 4.4 Consensus size: 11
19463478 TAATATTAAT
19463488 AAATAAAAATTTA
1 AAATAAAAA--TA
19463501 AAATAAAAATA
1 AAATAAAAATA
19463512 AAGATAAAAAT-
1 AA-ATAAAAATA
*
19463523 AAATAGAAATA
1 AAATAAAAATA
19463534 TAAAT
1 -AAAT
19463539 GATCGAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
10 7 0.21
11 6 0.18
12 12 0.35
13 9 0.26
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.24
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:19479658 original size:32 final size:32
Alignment explanation
Indices: 19479617--19479924 Score: 359
Period size: 32 Copynumber: 9.6 Consensus size: 32
19479607 CATGAAACAA
* *
19479617 TGTTCACAGATTGATAGCTCTTACGAGCTTAT
1 TGTTCACAGATTGATAGCTCTTATGAGCTTAC
* * *
19479649 TGTTCACAGATTGATAGCTCCTACGAGCTTAT
1 TGTTCACAGATTGATAGCTCTTATGAGCTTAC
* *
19479681 TGTTCATAGATTGATAGCT-TCTATGAGCTTAT
1 TGTTCACAGATTGATAGCTCT-TATGAGCTTAC
* * * *
19479713 TGTTCATAGATTGACAGCTCCTACGAGCTTAC
1 TGTTCACAGATTGATAGCTCTTATGAGCTTAC
**
19479745 TGTTCACAGATTGATAGCTCTTATGAGCACAC
1 TGTTCACAGATTGATAGCTCTTATGAGCTTAC
* * *
19479777 TATTCACAGATTGATAGCTCTCATGAGCATAC
1 TGTTCACAGATTGATAGCTCTTATGAGCTTAC
* * *
19479809 TATTCACAGATTGATAGCTCTTATGAGCATAG
1 TGTTCACAGATTGATAGCTCTTATGAGCTTAC
* * *
19479841 TATTCACAGATTAATAGCTCTTATGAGCATAC
1 TGTTCACAGATTGATAGCTCTTATGAGCTTAC
*
19479873 TCTTCACAGATTGATAGCTCTTATGAG-TATAC
1 TGTTCACAGATTGATAGCTCTTATGAGCT-TAC
* *
19479905 TGTTCATAGATTAATAGCTC
1 TGTTCACAGATTGATAGCTC
19479925 ATACGAATAT
Statistics
Matches: 246, Mismatches: 27, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
32 246 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTTCACAGATTGATAGCTCTTATGAGCTTAC
Found at i:19479788 original size:96 final size:95
Alignment explanation
Indices: 19479617--19479972 Score: 378
Period size: 96 Copynumber: 3.7 Consensus size: 95
19479607 CATGAAACAA
* * * * *
19479617 TGTTCACAGATTGATAGCTCTTACGAGCTTATTGTTCACAGATTGATAGCTCCTACGAGCTTATT
1 TGTTCACAGATTGATAGCTCTTACGAGCTTACTGTTCACAGATTGATAGCTCTTATGAGCATACT
* * *
19479682 GTTCATAGATTGATAGCTTCTATGAGCTTAT
66 ATTCACAGATTGATAGC-TCTATGAGCTTAC
* * * *
19479713 TGTTCATAGATTGACAGCTCCTACGAGCTTACTGTTCACAGATTGATAGCTCTTATGAGCACACT
1 TGTTCACAGATTGATAGCTCTTACGAGCTTACTGTTCACAGATTGATAGCTCTTATGAGCATACT
*
19479778 ATTCACAGATTGATAGCTCTCATGAGCATAC
66 ATTCACAGATTGATAGCTCT-ATGAGCTTAC
* * * * * *
19479809 TATTCACAGATTGATAGCTCTTATGAGCATAGTATTCACAGATTAATAGCTCTTATGAGCATACT
1 TGTTCACAGATTGATAGCTCTTACGAGCTTACTGTTCACAGATTGATAGCTCTTATGAGCATACT
*
19479874 CTTCACAGATTGATAGCTCTTATGAG-TATAC
66 ATTCACAGATTGATAGCTC-TATGAGCT-TAC
* * * * * *
19479905 TGTTCATAGATTAATAGCTCATACGA-ATATACTGGGT-ACTA-ATTAATTAGCTCTTATGAGCA
1 TGTTCACAGATTGATAGCTCTTACGAGCT-TACT-GTTCAC-AGATTGA-TAGCTCTTATGAGCA
19479967 TACTAT
62 TACTAT
19479973 GAAAATTACA
Statistics
Matches: 217, Mismatches: 36, Indels: 13
0.82 0.14 0.05
Matches are distributed among these distances:
95 3 0.01
96 191 0.88
97 23 0.11
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (95 bp):
TGTTCACAGATTGATAGCTCTTACGAGCTTACTGTTCACAGATTGATAGCTCTTATGAGCATACT
ATTCACAGATTGATAGCTCTATGAGCTTAC
Found at i:19479936 original size:32 final size:32
Alignment explanation
Indices: 19479617--19479970 Score: 263
Period size: 32 Copynumber: 11.0 Consensus size: 32
19479607 CATGAAACAA
* * *
19479617 TGTTCACAGATTGATAGCTCTTACGAGCT-TAT
1 TGTTCACAGATTAATAGCTCTTATGAG-TATAC
* * * *
19479649 TGTTCACAGATTGATAGCTCCTACGAGCT-TAT
1 TGTTCACAGATTAATAGCTCTTATGAG-TATAC
* * *
19479681 TGTTCATAGATTGATAGCT-TCTATGAGCT-TAT
1 TGTTCACAGATTAATAGCTCT-TATGAG-TATAC
* * * * *
19479713 TGTTCATAGATTGACAGCTCCTACGAGCT-TAC
1 TGTTCACAGATTAATAGCTCTTATGAG-TATAC
* * *
19479745 TGTTCACAGATTGATAGCTCTTATGAGCACAC
1 TGTTCACAGATTAATAGCTCTTATGAGTATAC
* * * *
19479777 TATTCACAGATTGATAGCTCTCATGAGCATAC
1 TGTTCACAGATTAATAGCTCTTATGAGTATAC
* * * *
19479809 TATTCACAGATTGATAGCTCTTATGAGCATAG
1 TGTTCACAGATTAATAGCTCTTATGAGTATAC
* *
19479841 TATTCACAGATTAATAGCTCTTATGAGCATAC
1 TGTTCACAGATTAATAGCTCTTATGAGTATAC
* *
19479873 TCTTCACAGATTGATAGCTCTTATGAGTATAC
1 TGTTCACAGATTAATAGCTCTTATGAGTATAC
* * * *
19479905 TGTTCATAGATTAATAGCTCATACGAATATAC
1 TGTTCACAGATTAATAGCTCTTATGAGTATAC
* *
19479937 TGGGT-ACTA-ATTAATTAGCTCTTATGAGCATAC
1 T-GTTCAC-AGATTAA-TAGCTCTTATGAGTATAC
19479970 T
1 T
19479971 ATGAAAATTA
Statistics
Matches: 280, Mismatches: 36, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
32 262 0.94
33 18 0.06
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTTCACAGATTAATAGCTCTTATGAGTATAC
Found at i:19480823 original size:38 final size:38
Alignment explanation
Indices: 19480757--19480836 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 38
19480747 ATCGACTAAG
* **
19480757 ACATGGGTGTGCGGGATGCACGAGCGTGTAGAGGAGCC
1 ACATAGGTGTGCGGGACACACGAGCGTGTAGAGGAGCC
19480795 ACATAGGTGTGCGGGACACACG-GACGTGTAGAGGAGCC
1 ACATAGGTGTGCGGGACACACGAG-CGTGTAGAGGAGCC
19480833 ACAT
1 ACAT
19480837 GGGCATGTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 1 0.03
38 37 0.97
ACGTcount: A:0.25, C:0.20, G:0.40, T:0.15
Consensus pattern (38 bp):
ACATAGGTGTGCGGGACACACGAGCGTGTAGAGGAGCC
Found at i:19480835 original size:21 final size:21
Alignment explanation
Indices: 19480811--19480854 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
19480801 GTGTGCGGGA
*
19480811 CACACGGACGTGTAGAGGAGC
1 CACACGGACATGTAGAGGAGC
* * *
19480832 CACATGGGCATGTGGAGGAGC
1 CACACGGACATGTAGAGGAGC
19480853 CA
1 CA
19480855 TATAGCCATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.23, G:0.39, T:0.11
Consensus pattern (21 bp):
CACACGGACATGTAGAGGAGC
Found at i:19480864 original size:21 final size:21
Alignment explanation
Indices: 19480825--19480867 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
19480815 CGGACGTGTA
* *
19480825 GAGGAGCCACATGGGCATGTG
1 GAGGAGCCACATAGCCATGTG
*
19480846 GAGGAGCCATATAGCCATGTG
1 GAGGAGCCACATAGCCATGTG
19480867 G
1 G
19480868 CGCCTGTAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.19, G:0.40, T:0.16
Consensus pattern (21 bp):
GAGGAGCCACATAGCCATGTG
Found at i:19481303 original size:55 final size:55
Alignment explanation
Indices: 19481215--19481326 Score: 170
Period size: 55 Copynumber: 2.0 Consensus size: 55
19481205 AGTGCTATGT
** * *
19481215 AACAATCGATTCAAAAGAAGCAATATTTTAACATGACAATCGATTTAAACATATA
1 AACAATCGATTCAAAAGAAGCAATATTCCAACATGAAAATCAATTTAAACATATA
* *
19481270 AACAATCGATTCAAAAGAAGTAGTATTCCAACATGAAAATCAATTTAAACATATA
1 AACAATCGATTCAAAAGAAGCAATATTCCAACATGAAAATCAATTTAAACATATA
19481325 AA
1 AA
19481327 AAACCATAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.51, C:0.14, G:0.09, T:0.26
Consensus pattern (55 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACATGAAAATCAATTTAAACATATA
Found at i:19484938 original size:144 final size:144
Alignment explanation
Indices: 19484781--19485072 Score: 505
Period size: 144 Copynumber: 2.0 Consensus size: 144
19484771 TTTAATGAAA
*
19484781 CTTTGGGATGAAGTTGAATTTTTTGTGAATGTTGGTCTAGTTTGGAAACCCTAATTATTTGGAGT
1 CTTTGGGATGAAGTTGAATTTTTTGTGAAAGTTGGTCTAGTTTGGAAACCCTAATTATTTGGAGT
* * * *
19484846 CTCTTTGTGTAATTTACCCTTTTTGCTTGATTTAAAAACCTATTTTCTTTTT-TTTTGGACTTTT
66 CTATTTATGTAATTTACCCTTTTTGCTTGATTTAAAAACCCATTTTCTTTTTATTTT-GAATTTT
19484910 GAACTCTCATTTCCC
130 GAACTCTCATTTCCC
19484925 CTTTGGGATGAAGTTGAATTTTTTGTGAAAGTTGGTCTAGTTTGGAAACCCTAATTATTTGGAGT
1 CTTTGGGATGAAGTTGAATTTTTTGTGAAAGTTGGTCTAGTTTGGAAACCCTAATTATTTGGAGT
*
19484990 CTATTTATGTAATTTACCCTTTTTTCTTGATTTAAAAACCCATTTTCTTTTTATTTTGAATTTTG
66 CTATTTATGTAATTTACCCTTTTTGCTTGATTTAAAAACCCATTTTCTTTTTATTTTGAATTTTG
*
19485055 AACTCTCATTTTCC
131 AACTCTCATTTCCC
19485069 CTTT
1 CTTT
19485073 TCTTTTTCCC
Statistics
Matches: 140, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
144 136 0.97
145 4 0.03
ACGTcount: A:0.22, C:0.14, G:0.15, T:0.49
Consensus pattern (144 bp):
CTTTGGGATGAAGTTGAATTTTTTGTGAAAGTTGGTCTAGTTTGGAAACCCTAATTATTTGGAGT
CTATTTATGTAATTTACCCTTTTTGCTTGATTTAAAAACCCATTTTCTTTTTATTTTGAATTTTG
AACTCTCATTTCCC
Found at i:19491059 original size:11 final size:12
Alignment explanation
Indices: 19491038--19491066 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
19491028 GTACTTCTTG
19491038 AAAATATTAATA
1 AAAATATTAATA
19491050 AAAATA-TAATA
1 AAAATATTAATA
19491061 AAAATA
1 AAAATA
19491067 GAATTTAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
AAAATATTAATA
Found at i:19497608 original size:24 final size:27
Alignment explanation
Indices: 19497560--19497609 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
19497550 GAAAGAGACT
*
19497560 AAAAATTAGAGTAATTAATCTACCAAA
1 AAAAATTAGAGTAATTAATCAACCAAA
19497587 AAAAATT-GAGTAATT-A-CAACCAA
1 AAAAATTAGAGTAATTAATCAACCAA
19497610 TCACAATTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 6 0.27
25 1 0.05
26 8 0.36
27 7 0.32
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (27 bp):
AAAAATTAGAGTAATTAATCAACCAAA
Found at i:19498623 original size:30 final size:32
Alignment explanation
Indices: 19498589--19498659 Score: 103
Period size: 31 Copynumber: 2.3 Consensus size: 32
19498579 CATTTAACAC
* *
19498589 AACAGTCACTCAAC-TT-TGAAAATGTGACAA
1 AACAGTCACTCAACGTTATAAAAAAGTGACAA
19498619 AACAGTCAC-CAACGTTATAAAAAAGTGACAA
1 AACAGTCACTCAACGTTATAAAAAAGTGACAA
19498650 AACAGTCACT
1 AACAGTCACT
19498660 AATAAAGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 4 0.11
30 11 0.31
31 21 0.58
ACGTcount: A:0.46, C:0.21, G:0.13, T:0.20
Consensus pattern (32 bp):
AACAGTCACTCAACGTTATAAAAAAGTGACAA
Found at i:19499728 original size:31 final size:31
Alignment explanation
Indices: 19499682--19499843 Score: 249
Period size: 31 Copynumber: 5.3 Consensus size: 31
19499672 TCATGGCAGT
* *
19499682 TGACTATTTTTTCACTTTTCGATAACGTTAG
1 TGACTGTTTTGTCACTTTTCGATAACGTTAG
19499713 TGACTGTTTTGTCACTTTTCGATAACGTTAG
1 TGACTGTTTTGTCACTTTTCGATAACGTTAG
*
19499744 TGACTGTTTTGTCACTTTTCGATAATGTTAG
1 TGACTGTTTTGTCACTTTTCGATAACGTTAG
*
19499775 TGACTATTTTGTCACTTTTCGATAACGTTAG
1 TGACTGTTTTGTCACTTTTCGATAACGTTAG
19499806 TGACTGTTTTGTCACATTTTC-A-AA-GTTGAG
1 TGACTGTTTTGTCAC-TTTTCGATAACGTT-AG
19499836 TGACTGTT
1 TGACTGTT
19499844 GTGTTAAATG
Statistics
Matches: 123, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
29 3 0.02
30 12 0.10
31 103 0.84
32 5 0.04
ACGTcount: A:0.21, C:0.15, G:0.18, T:0.46
Consensus pattern (31 bp):
TGACTGTTTTGTCACTTTTCGATAACGTTAG
Found at i:19508998 original size:21 final size:22
Alignment explanation
Indices: 19508958--19509009 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
19508948 AACTTGAGTT
19508958 GTATCGGTAGTTGAATTACA-A
1 GTATCGGTAGTTGAATTACATA
*
19508979 GTATCGGTAGTTG-GTATACATA
1 GTATCGGTAGTTGAAT-TACATA
19509001 -TATCGGTAG
1 GTATCGGTAG
19509010 AAGTTGCAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 1 0.04
21 26 0.93
22 1 0.04
ACGTcount: A:0.29, C:0.10, G:0.27, T:0.35
Consensus pattern (22 bp):
GTATCGGTAGTTGAATTACATA
Found at i:19519634 original size:9 final size:9
Alignment explanation
Indices: 19519620--19519657 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
19519610 TTAATTTTCG
19519620 AATTCGAAT
1 AATTCGAAT
19519629 AATTCGAAT
1 AATTCGAAT
19519638 AATTCGAAT
1 AATTCGAAT
*
19519647 AAATCGAAT
1 AATTCGAAT
19519656 AA
1 AA
19519658 AACTATATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.29
Consensus pattern (9 bp):
AATTCGAAT
Found at i:19519884 original size:58 final size:58
Alignment explanation
Indices: 19519793--19519914 Score: 176
Period size: 58 Copynumber: 2.1 Consensus size: 58
19519783 AAACCCATCA
* *
19519793 ATAAACTAAATCCAAATATTTTTAAACCCAAATATAATTTCATTCTTCAAA-AACACTT
1 ATAAACTAAATCCAAATATTTTTAAACCAAAATATAATTTCATTCTT-AAATAACACTC
* *
19519851 ATAAACTAAA-CTCAAATATTTTTAAATCAAAATATAATTTTATTCTTAAATAACACTC
1 ATAAACTAAATC-CAAATATTTTTAAACCAAAATATAATTTCATTCTTAAATAACACTC
19519909 ATAAAC
1 ATAAAC
19519915 AACTCCTTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
57 4 0.07
58 54 0.93
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.35
Consensus pattern (58 bp):
ATAAACTAAATCCAAATATTTTTAAACCAAAATATAATTTCATTCTTAAATAACACTC
Found at i:19526357 original size:14 final size:15
Alignment explanation
Indices: 19526338--19526366 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
19526328 TGTACTTAAC
19526338 CTTAACA-TTTTTTT
1 CTTAACACTTTTTTT
19526352 CTTAACACTTTTTTT
1 CTTAACACTTTTTTT
19526367 TAGTTTAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (15 bp):
CTTAACACTTTTTTT
Found at i:19526740 original size:24 final size:24
Alignment explanation
Indices: 19526713--19526772 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
19526703 AATAAATAAG
19526713 TTAAACTAAAAGTAATTGAACATT
1 TTAAACTAAAAGTAATTGAACATT
19526737 TTAAACTAAAAGTAATTGAACATT
1 TTAAACTAAAAGTAATTGAACATT
*
19526761 TAAAATCTAAAA
1 TTAAA-CTAAAA
19526773 AAGAAATACG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 28 0.82
25 6 0.18
ACGTcount: A:0.53, C:0.08, G:0.07, T:0.32
Consensus pattern (24 bp):
TTAAACTAAAAGTAATTGAACATT
Found at i:19527036 original size:31 final size:31
Alignment explanation
Indices: 19526971--19527049 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
19526961 AATTAAGTAC
*
19526971 CAAATTAAGAAAAAATGTTAAATCTAGATGT
1 CAAATTAAGAAAAAATGTTAAATCTAGATAT
* * *
19527002 CAAATTAGGAGAAAATGTTAAGT-TCAGATAT
1 CAAATTAAGAAAAAATGTTAAATCT-AGATAT
*
19527033 CAAATTGAAAAAAAAAT
1 CAAATT-AAGAAAAAAT
19527050 TAAATACTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
30 1 0.03
31 31 0.79
32 7 0.18
ACGTcount: A:0.53, C:0.06, G:0.14, T:0.27
Consensus pattern (31 bp):
CAAATTAAGAAAAAATGTTAAATCTAGATAT
Found at i:19527284 original size:8 final size:8
Alignment explanation
Indices: 19527271--19527295 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
19527261 AAATATTTCG
19527271 AATATTTT
1 AATATTTT
19527279 AATATTTT
1 AATATTTT
19527287 AATATTTT
1 AATATTTT
19527295 A
1 A
19527296 TTTCACATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
AATATTTT
Found at i:19528467 original size:23 final size:22
Alignment explanation
Indices: 19528412--19528475 Score: 60
Period size: 23 Copynumber: 2.9 Consensus size: 22
19528402 TAATAATAAA
*
19528412 AATTATAATATT-TGAAATTAAT
1 AATT-TAATATTATTAAATTAAT
*
19528434 AATTTAATATTTTATAAATTAA-
1 AATTTAATATTAT-TAAATTAAT
*
19528456 AATATTATTATTATTAAATT
1 AAT-TTAATATTATTAAATT
19528476 TATTTTTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 7 0.19
22 14 0.39
23 15 0.42
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
AATTTAATATTATTAAATTAAT
Found at i:19529324 original size:26 final size:27
Alignment explanation
Indices: 19529288--19529340 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
19529278 TGAATCAGAC
*
19529288 AAAAAAAAAAGA-TTAAGTACCAAATT
1 AAAAAAAAAAGAGTAAAGTACCAAATT
*
19529314 AAAAAAAAAAGAGTAAAGTATCAAATT
1 AAAAAAAAAAGAGTAAAGTACCAAATT
19529341 GGACCCCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.66, C:0.06, G:0.09, T:0.19
Consensus pattern (27 bp):
AAAAAAAAAAGAGTAAAGTACCAAATT
Found at i:19529395 original size:32 final size:32
Alignment explanation
Indices: 19529359--19529421 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
19529349 AAAAAAATGT
*
19529359 TAAGTACT-AAATTAAGAAAAAAGTGTTAAGTC
1 TAAGT-CTCAAATTAAGAAAAAAGTGTCAAGTC
* * *
19529391 TAAGTGTCAAATTAGGAAAAAATTGTCAAGT
1 TAAGTCTCAAATTAAGAAAAAAGTGTCAAGT
19529422 TTAGATACGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
31 1 0.04
32 25 0.96
ACGTcount: A:0.48, C:0.06, G:0.17, T:0.29
Consensus pattern (32 bp):
TAAGTCTCAAATTAAGAAAAAAGTGTCAAGTC
Found at i:19530124 original size:17 final size:17
Alignment explanation
Indices: 19530104--19530142 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
19530094 TAAAAATCAA
19530104 AATATTTT-TAATAAGAT
1 AATATTTTGTAATAA-AT
19530121 AATATTTTGTAATAAAT
1 AATATTTTGTAATAAAT
19530138 AATAT
1 AATAT
19530143 ATTATAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (17 bp):
AATATTTTGTAATAAAT
Found at i:19531342 original size:18 final size:18
Alignment explanation
Indices: 19531319--19531357 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
19531309 GAATTTTTTT
*
19531319 AAATT-AATTTTTATATAA
1 AAATTAAATTATTA-ATAA
19531337 AAATTAAATTATTAATAA
1 AAATTAAATTATTAATAA
19531355 AAA
1 AAA
19531358 ATTATTTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATTAAATTATTAATAA
Found at i:19544513 original size:42 final size:42
Alignment explanation
Indices: 19544444--19544664 Score: 255
Period size: 42 Copynumber: 5.2 Consensus size: 42
19544434 CTGTTATCGA
* * *
19544444 GGTC-TTAGCGACGCTTTCCACACAAATGCCGCTATAGAACAT
1 GGTCTTTAGTGACGCTTTCC-CACAAACGCCGCTAAAGAACAT
* * * *
19544486 GGTCTTTAGTGGCGCTTTCCCATAAATGCCGCTATAGAACAT
1 GGTCTTTAGTGACGCTTTCCCACAAACGCCGCTAAAGAACAT
* * * *
19544528 GGTCTTTAGCGACACTTTACCATAAACGCCGCTAAAGAACAT
1 GGTCTTTAGTGACGCTTTCCCACAAACGCCGCTAAAGAACAT
* * * * *
19544570 GGTCTTTTTGCGACGTTTTTTCCACAAACGTCGCTAAAGAACAT
1 GGTC-TTTAGTGACG-CTTTCCCACAAACGCCGCTAAAGAACAT
19544614 GGTCTTTAGTGACGCTTTCCTCACAAACGCCGCTAAAGAACAT
1 GGTCTTTAGTGACGCTTTCC-CACAAACGCCGCTAAAGAACAT
19544657 GGTCTTTA
1 GGTCTTTA
19544665 ACGGCACTTC
Statistics
Matches: 155, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
42 69 0.45
43 58 0.37
44 28 0.18
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (42 bp):
GGTCTTTAGTGACGCTTTCCCACAAACGCCGCTAAAGAACAT
Found at i:19544685 original size:43 final size:43
Alignment explanation
Indices: 19544513--19544693 Score: 136
Period size: 43 Copynumber: 4.2 Consensus size: 43
19544503 TCCCATAAAT
* * * *
19544513 GCCGCTATAGAACATGGTCTTTAGCGACACTTTACC--ATAAAC
1 GCCGCTAAAGAACATGGTCTTTAACGACAC-TTCCCTAAAAAAC
** ** * *
19544555 GCCGCTAAAGAACATGGTCTTTTTGCGACGTTTTTTCC--ACAAAC
1 GCCGCTAAAGAACATGGTC-TTTAACGAC--ACTTCCCTAAAAAAC
* ** * * * *
19544599 GTCGCTAAAGAACATGGTCTTTAGTGACGCTTTCCTCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAACGACACTTCCCTAAAAAAC
*
19544642 GCCGCTAAAGAACATGGTCTTTAACGGCACTTCCCTAAAAAAC
1 GCCGCTAAAGAACATGGTCTTTAACGACACTTCCCTAAAAAAC
19544685 GCCGCTAAA
1 GCCGCTAAA
19544694 ATTAATAGAT
Statistics
Matches: 115, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
41 5 0.04
42 18 0.16
43 65 0.57
44 27 0.23
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
GCCGCTAAAGAACATGGTCTTTAACGACACTTCCCTAAAAAAC
Found at i:19544685 original size:86 final size:84
Alignment explanation
Indices: 19544444--19544693 Score: 240
Period size: 86 Copynumber: 2.9 Consensus size: 84
19544434 CTGTTATCGA
* * * *
19544444 GGTC-TTAGCGACGCTTTCCACACAAATGCCGCTATAGAACATGGTCTTTAGTGGCGCTTTCCC-
1 GGTCTTTAGCGACGCTTTCC-CACAAACGCCGCTAAAGAACATGGTCTTTA-TGGCACGTTCCCT
* * *
19544507 ATAAATGCCGCTATAGAACAT
64 AAAAACGCCGCTAAAGAACAT
* * * * *
19544528 GGTCTTTAGCGACACTTTACCATAAACGCCGCTAAAGAACATGGTCTTT-TTGCGACGTTTTTTC
1 GGTCTTTAGCGACGCTTTCCCACAAACGCCGCTAAAGAACATGGTCTTTATGGC-ACG---TTCC
* *
19544592 C-ACAAACGTCGCTAAAGAACAT
62 CTAAAAACGCCGCTAAAGAACAT
* *
19544614 GGTCTTTAGTGACGCTTTCCTCACAAACGCCGCTAAAGAACATGGTCTTTAACGGCAC-TTCCCT
1 GGTCTTTAGCGACGCTTTCC-CACAAACGCCGCTAAAGAACATGGTCTTT-ATGGCACGTTCCCT
19544678 AAAAAACGCCGCTAAA
64 -AAAAACGCCGCTAAA
19544694 ATTAATAGAT
Statistics
Matches: 134, Mismatches: 22, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
82 3 0.02
83 1 0.01
84 34 0.25
85 13 0.10
86 51 0.38
87 28 0.21
88 2 0.01
89 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (84 bp):
GGTCTTTAGCGACGCTTTCCCACAAACGCCGCTAAAGAACATGGTCTTTATGGCACGTTCCCTAA
AAACGCCGCTAAAGAACAT
Found at i:19545033 original size:21 final size:21
Alignment explanation
Indices: 19545009--19545049 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
19544999 GCTTCCTTCG
*
19545009 CTTCTCTCGCTGCTGCCTCCA
1 CTTCCCTCGCTGCTGCCTCCA
*
19545030 CTTCCCTCGTTGCTGCCTCC
1 CTTCCCTCGCTGCTGCCTCC
19545050 GCTTTAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.49, G:0.15, T:0.34
Consensus pattern (21 bp):
CTTCCCTCGCTGCTGCCTCCA
Found at i:19550881 original size:14 final size:14
Alignment explanation
Indices: 19550859--19550892 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
19550849 ATAATTAAAT
*
19550859 AATTTAATATTTTG
1 AATTAAATATTTTG
19550873 AATTAAATATTTTG
1 AATTAAATATTTTG
*
19550887 ATTTAA
1 AATTAA
19550893 GGTTTAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (14 bp):
AATTAAATATTTTG
Found at i:19550890 original size:122 final size:122
Alignment explanation
Indices: 19550751--19551844 Score: 1733
Period size: 122 Copynumber: 9.0 Consensus size: 122
19550741 TTTATTTAAT
*
19550751 AATTAAATAGTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
1 AATTAAATATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
*
19550816 TTATGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTG
66 TTCTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTG
* * *
19550873 AATTAAATATTTTGATTTAAGGTTTAATAAATAACTAATTAATTAATTAATTAATTTAATATTTG
1 AATTAAATATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
* *
19550938 TTCTATTTTTAATAATTGAATATTTATTT-AATATAATTAAATAATTTAATATTTTG
66 TTCTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTG
19550994 AATTAAATA-TTTGAGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTT
1 AATTAAATATTTTGA-TTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTT
* *
19551058 GTTCTGTTTTTAATAATTTAATATTTATTTAAATATAATTTAATTATTTAATATTTTG
65 GTTCTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTG
19551116 AATTAAATA-TTTGAGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTT
1 AATTAAATATTTTGA-TTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTT
*
19551180 GTTTTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTG
65 GTTCTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTG
* * *
19551238 AATTAAATATTTTGATTTAGGGTTTAACAAATAACTAATTAAATAATTAATTATTTCAATATTTC
1 AATTAAATATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
* *
19551303 TTATGTTTTTAATAATTTAATATTTATTTAAATATAATTATATAATTTAATATTTTG
66 TTCTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTG
* *
19551360 AATTAAATATTTTGATTTAAGGTTTAATAAATAACTAA-T---TAATTAATTAATTTAATATTTG
1 AATTAAATATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
* *
19551421 TTCTATTTTTAATAATTGAATATTTATTT-AATATAATTAAATAATTTAATATTTTG
66 TTCTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTG
19551477 AATTAAATA-TTTGAGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTT
1 AATTAAATATTTTGA-TTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTT
* * * *
19551541 GTTCTATTTTTAATAATTGAATATTTATTTAAATATAATTTAATTATTTAATATTTTG
65 GTTCTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTG
* * *
19551599 AATTAAATAATTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTCAATATTTA
1 AATTAAATATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
* * *
19551664 TTATGTTTTTAATAATTTAATATTTATTTAAATATAATTTAATTATTTAATATTTTG
66 TTCTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTG
* *
19551721 AATTAAATATTTCGATTTAAGGTTTAATAATAAATAACTAATTAAATAATTAATTATTTTAATAT
1 AATTAAATATTTTGATTT-AGGGTT--TAATAAATAACTAATTAAATAATTAATTATTTTAATA-
* * *
19551786 TTTTTTCTATTTTTAATAATTGAATATTTATTT-AATATAATTAAATAA-TTAATTATTTT
62 TTTGTTCTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAA-TATTTT
19551845 AACATTTGTT
Statistics
Matches: 907, Mismatches: 50, Indels: 27
0.92 0.05 0.03
Matches are distributed among these distances:
116 5 0.01
117 57 0.06
118 46 0.05
120 5 0.01
121 161 0.18
122 530 0.58
123 15 0.02
124 4 0.00
125 55 0.06
126 29 0.03
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.51
Consensus pattern (122 bp):
AATTAAATATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
TTCTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTG
Found at i:19551368 original size:14 final size:14
Alignment explanation
Indices: 19551346--19551379 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
19551336 ATAATTATAT
*
19551346 AATTTAATATTTTG
1 AATTAAATATTTTG
19551360 AATTAAATATTTTG
1 AATTAAATATTTTG
*
19551374 ATTTAA
1 AATTAA
19551380 GGTTTAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (14 bp):
AATTAAATATTTTG
Found at i:19551576 original size:361 final size:363
Alignment explanation
Indices: 19550751--19551844 Score: 1781
Period size: 361 Copynumber: 3.0 Consensus size: 363
19550741 TTTATTTAAT
19550751 AATTAAATAGTTTGA-TTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTT
1 AATTAAATA-TTTGAGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTT
19550815 GTTATGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGAATTAAA
65 GTTATGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGAATTAAA
* * * * *
19550880 TATTTTGATTTAAGGTTTAATAAATAACTAATTAATTAATTAATTAATTT-AATATTTGTTCTAT
130 TATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATT-ATTTCAATATTTATTATGT
* *
19550944 TTTTAATAATTGAATATTTATTT-AATATAATTAAATAATTTAATATTTTGAATTAAATA-TTTG
194 TTTTAATAATTTAATATTTATTTAAATATAATTATATAATTTAATATTTTGAATTAAATATTTTG
* *
19551007 AGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTGTTCTGTTTTTAAT
259 A-TTTAAGGTTTAATAAATAACTAATT--ATAATTAATTATTTTAATATTTGTTCTATTTTTAAT
* * *
19551072 AATTTAATATTTATTTAAATATAATTTAATTATTTAATATTTTG
321 AATTGAATATTTATTT-AATATAATTAAATAATTTAATATTTTG
19551116 AATTAAATATTTGAGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
1 AATTAAATATTTGAGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
*
19551181 TTTTGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGAATTAAAT
66 TTATGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGAATTAAAT
* *
19551246 ATTTTGATTTAGGGTTTAACAAATAACTAATTAAATAATTAATTATTTCAATATTTCTTATGTTT
131 ATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTCAATATTTATTATGTTT
19551311 TTAATAATTTAATATTTATTTAAATATAATTATATAATTTAATATTTTGAATTAAATATTTTGAT
196 TTAATAATTTAATATTTATTTAAATATAATTATATAATTTAATATTTTGAATTAAATATTTTGAT
*
19551376 TTAAGGTTTAATAAATAACTAA-T-TAATTAATTAATTTAATATTTGTTCTATTTTTAATAATTG
261 TTAAGGTTTAATAAATAACTAATTATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTG
19551439 AATATTTATTTAATATAATTAAATAATTTAATATTTTG
326 AATATTTATTTAATATAATTAAATAATTTAATATTTTG
19551477 AATTAAATATTTGAGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
1 AATTAAATATTTGAGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
* * * * *
19551542 TTCTATTTTTAATAATTGAATATTTATTTAAATATAATTTAATTATTTAATATTTTGAATTAAAT
66 TTATGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGAATTAAAT
*
19551607 AATTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTCAATATTTATTATGTTT
131 ATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTCAATATTTATTATGTTT
* *
19551672 TTAATAATTTAATATTTATTTAAATATAATT-TAATTATTTAATATTTTGAATTAAATATTTCGA
196 TTAATAATTTAATATTTATTTAAATATAATTAT-ATAATTTAATATTTTGAATTAAATATTTTGA
*
19551736 TTTAAGGTTTAATAATAAATAACTAATTAAATAATTAATTATTTTAATATTTTTTTCTATTTTTA
260 TTTAAGG-TT--TAATAAATAACTAATT--ATAATTAATTATTTTAATA-TTTGTTCTATTTTTA
19551801 ATAATTGAATATTTATTTAATATAATTAAATAA-TTAATTATTTT
319 ATAATTGAATATTTATTTAATATAATTAAATAATTTAA-TATTTT
19551845 AACATTTGTT
Statistics
Matches: 688, Mismatches: 27, Indels: 24
0.93 0.04 0.03
Matches are distributed among these distances:
360 1 0.00
361 279 0.41
362 50 0.07
364 23 0.03
365 199 0.29
366 57 0.08
367 5 0.01
368 21 0.03
369 53 0.08
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.51
Consensus pattern (363 bp):
AATTAAATATTTGAGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
TTATGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGAATTAAAT
ATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTCAATATTTATTATGTTT
TTAATAATTTAATATTTATTTAAATATAATTATATAATTTAATATTTTGAATTAAATATTTTGAT
TTAAGGTTTAATAAATAACTAATTATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTG
AATATTTATTTAATATAATTAAATAATTTAATATTTTG
Found at i:19551609 original size:30 final size:29
Alignment explanation
Indices: 19551512--19551729 Score: 96
Period size: 30 Copynumber: 7.3 Consensus size: 29
19551502 AATAAATAAC
19551512 TAATTAAATAA-TTAATTATTTTAATA-TT
1 TAATTAAATAATTTAATTA-TTTAATATTT
* ** * * *
19551540 T-GTTCTAT-TTTTAATAATTGAATA-TT
1 TAATTAAATAATTTAATTATTTAATATTT
*
19551566 TATTTAAATATAATTTAATTATTTAATATTT
1 TAATT-AA-ATAATTTAATTATTTAATATTT
* **
19551597 TGAATTAAATAATTTGATTTAGGGTTTAATAAATAAC
1 T-AATTAAATAATTT-AATTA---TTTAAT--AT-TT
19551634 TAATTAAATAA-TTAATTATTTCAATA-TT
1 TAATTAAATAATTTAATTATTT-AATATTT
** * *
19551662 T-ATTATGT-TTTTAATAATTTAATA-TT
1 TAATTAAATAATTTAATTATTTAATATTT
*
19551688 TATTTAAATATAATTTAATTATTTAATATTT
1 TAATT-AA-ATAATTTAATTATTTAATATTT
19551719 TGAATTAAATA
1 T-AATTAAATA
19551730 TTTCGATTTA
Statistics
Matches: 139, Mismatches: 29, Indels: 42
0.66 0.14 0.20
Matches are distributed among these distances:
26 16 0.12
27 28 0.20
28 3 0.02
29 3 0.02
30 38 0.27
31 17 0.12
32 9 0.06
34 10 0.07
35 2 0.01
36 12 0.09
37 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (29 bp):
TAATTAAATAATTTAATTATTTAATATTT
Found at i:19551662 original size:483 final size:484
Alignment explanation
Indices: 19550751--19551844 Score: 1917
Period size: 483 Copynumber: 2.2 Consensus size: 484
19550741 TTTATTTAAT
* *
19550751 AATTAAATAGTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTG
1 AATTAAATATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTC
19550816 TTATGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGAATTAAAT
66 TTATGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGAATTAAAT
19550881 ATTTTGATTTAAGGTTTAATAAATAACTAATTAATTAATTAATTAATTTAATATTTGTTCTATTT
131 ATTTTGATTTAAGGTTTAATAAATAAC--A-TAATTAATTAATTAATTTAATATTTGTTCTATTT
19550946 TTAATAATTGAATATTTATTTAATATAATTAAATAATTTAATATTTTGAATTAAATATTTGAGTT
193 TTAATAATTGAATATTTATTTAATATAATTAAATAATTTAATATTTTGAATTAAATATTTGAGTT
*
19551011 TAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTGTTCTGTTTTTAATAATT
258 TAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATT
*
19551076 TAATATTTATTTAAATATAATTTAATTATTTAATATTTTGAATTAAATATTTGAGTTTAGGGTTT
323 GAATATTTATTTAAATATAATTTAATTATTTAATATTTTGAATTAAATATTTGAGTTTAGGGTTT
* * *
19551141 AATAAATAACTAATTAAATAATTAATTATTTTAATATTTGTTTTGTTTTTAATAATTTAATATTT
388 AATAAATAACTAATTAAATAATTAATTATTTCAATATTTATTATGTTTTTAATAATTTAATATTT
19551206 ATTTAAATATAATTAAATAATTTAATATTTTG
453 ATTTAAATATAATTAAATAATTTAATATTTTG
* *
19551238 AATTAAATATTTTGATTTAGGGTTTAACAAATAACTAATTAAATAATTAATTATTTCAATATTTC
1 AATTAAATATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTC
*
19551303 TTATGTTTTTAATAATTTAATATTTATTTAAATATAATTATATAATTTAATATTTTGAATTAAAT
66 TTATGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGAATTAAAT
19551368 ATTTTGATTTAAGGTTTAATAAATAAC-TAATTAATTAATTAATTTAATATTTGTTCTATTTTTA
131 ATTTTGATTTAAGGTTTAATAAATAACATAATTAATTAATTAATTTAATATTTGTTCTATTTTTA
19551432 ATAATTGAATATTTATTTAATATAATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTTAG
196 ATAATTGAATATTTATTTAATATAATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTTAG
19551497 GGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAA
261 GGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAA
19551562 TATTTATTTAAATATAATTTAATTATTTAATATTTTGAATTAAATAATTTGA-TTTAGGGTTTAA
326 TATTTATTTAAATATAATTTAATTATTTAATATTTTGAATTAAAT-ATTTGAGTTTAGGGTTTAA
19551626 TAAATAACTAATTAAATAATTAATTATTTCAATATTTATTATGTTTTTAATAATTTAATATTTAT
390 TAAATAACTAATTAAATAATTAATTATTTCAATATTTATTATGTTTTTAATAATTTAATATTTAT
* *
19551691 TTAAATATAATTTAATTATTTAATATTTTG
455 TTAAATATAATTAAATAATTTAATATTTTG
* *
19551721 AATTAAATATTTCGATTTAAGGTTTAATAATAAATAACTAATTAAATAATTAATTATTTTAATAT
1 AATTAAATATTTTGATTT-AGGGTT--TAATAAATAACTAATTAAATAATTAATTATTTTAATA-
* * * *
19551786 TTTTTTCTATTTTTAATAATTGAATATTTATTT-AATATAATTAAATAA-TTAATTATTTT
62 TTTCTTATGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAA-TATTTT
19551845 AACATTTGTT
Statistics
Matches: 580, Mismatches: 21, Indels: 13
0.94 0.03 0.02
Matches are distributed among these distances:
483 329 0.57
484 11 0.02
485 4 0.01
486 55 0.09
487 181 0.31
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.51
Consensus pattern (484 bp):
AATTAAATATTTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTC
TTATGTTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGAATTAAAT
ATTTTGATTTAAGGTTTAATAAATAACATAATTAATTAATTAATTTAATATTTGTTCTATTTTTA
ATAATTGAATATTTATTTAATATAATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTTAG
GGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAA
TATTTATTTAAATATAATTTAATTATTTAATATTTTGAATTAAATATTTGAGTTTAGGGTTTAAT
AAATAACTAATTAAATAATTAATTATTTCAATATTTATTATGTTTTTAATAATTTAATATTTATT
TAAATATAATTAAATAATTTAATATTTTG
Found at i:19551693 original size:19 final size:19
Alignment explanation
Indices: 19551649--19551718 Score: 56
Period size: 19 Copynumber: 3.7 Consensus size: 19
19551639 AAATAATTAA
*
19551649 TTATTTCAATATTTATTATG
1 TTATTT-AATATTTAATATG
19551669 TT-TTTAATAATTTAATAT-
1 TTATTTAAT-ATTTAATATG
* * *
19551687 TTATTTAA-ATATAATTTAA
1 TTATTTAATATTTAATAT-G
19551706 TTATTTAATATTT
1 TTATTTAATATTT
19551719 TGAATTAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
17 7 0.17
18 5 0.12
19 24 0.59
20 5 0.12
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (19 bp):
TTATTTAATATTTAATATG
Found at i:19551867 original size:63 final size:65
Alignment explanation
Indices: 19551759--19551899 Score: 232
Period size: 64 Copynumber: 2.2 Consensus size: 65
19551749 AATAAATAAC
* * *
19551759 TAATTAAATAATTAATTATTTTAATATTTTTTTCTATTTTTAATAATTGAATATTTATTT-AATA
1 TAATTAAATAATTAATTATTTTAACATTTTGTTCTATTTTTAATAATTGAATATATATTTAAATA
*
19551823 TAATTAAATAATTAATTATTTTAACA-TTTGTTCTATTTTTAATAATTTAATATATATTTAAATA
1 TAATTAAATAATTAATTATTTTAACATTTTGTTCTATTTTTAATAATTGAATATATATTTAAATA
19551887 TAATTAAATAATT
1 TAATTAAATAATT
19551900 TTATATTTTA
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 30 0.42
64 42 0.58
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (65 bp):
TAATTAAATAATTAATTATTTTAACATTTTGTTCTATTTTTAATAATTGAATATATATTTAAATA
Found at i:19552192 original size:122 final size:121
Alignment explanation
Indices: 19551823--19552677 Score: 1248
Period size: 122 Copynumber: 7.2 Consensus size: 121
19551813 TTATTTAATA
* *
19551823 TAATTAAATAATTAATTATTTTAACATTTGTTCTATTTTTAATAATTTAATATATATTTAAATAT
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
* * *
19551888 AATTAAATAATTTTATATTTTAAATTAAATATTTTTATTTAAGG--T--T---TAA-
66 AATTAAATAATTTAATATTTTGAATTAAATA-TTTGATTTAAGGTTTAATAAATAAC
* *
19551937 TAATTAAATAATTAATTAATTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAA-AT
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
*
19552001 AATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTT-AGAGTTTAATAAATAAA
66 AATTAAATAATTTAATATTTTGAATTAAATATTTGA-TTTAAG-GTTTAATAAATAAC
* *
19552058 TAATTAATTAATTATTTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
* *
19552123 AATTAAATAATTTAATATTTTGAATGAAATGTTTTGATTTAAGGTTTAATAAATAAC
66 AATTAAATAATTTAATATTTTGAATTAAAT-ATTTGATTTAAGGTTTAATAAATAAC
* * * *
19552180 TAATTAAATAATTAATTATTTTAATATTTCTTATGTTTTTAATAATTTAATATTTGTTTAAATAT
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
* *
19552245 AATTATATAATTTAATATTTTGAATT-AA-A--T-ATTT-CGGTTTAATAAATAAC
66 AATTAAATAATTTAATATTTTGAATTAAATATTTGATTTAAGGTTTAATAAATAAC
* * *
19552295 TAATTAAATAATTAATTATTTTAATATTTGCTCTAGTTTTAATAATTGAATATTTATTT-AATAT
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
*
19552359 AATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTTAGGGTTTAATAAATAAC
66 AATTAAATAATTTAATATTTTGAATTAAATATTTGA-TTTAAGGTTTAATAAATAAC
*
19552416 TAATTAAATAATTAATTATTTTAATATTTGTTCTGTTTTTAATAATTTAATATTTATTTAAATAT
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
19552481 -A--AAATAATTTAATATTTTGAATTAAATATTTCGATTTAAGGTTTAATAAATAAC
66 AATTAAATAATTTAATATTTTGAATTAAATATTT-GATTTAAGGTTTAATAAATAAC
* *
19552535 TAATGTCAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTT-AATA
1 TAAT-TAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATA
* *
19552599 TAATTAAATAATTTAATATTTTGAATTAAATATTTAAGTTTAGGGTTTAATAAATAAC
65 TAATTAAATAATTTAATATTTTGAATTAAATATTTGA-TTTAAGGTTTAATAAATAAC
19552657 TAATTAAATAATTAATTATTT
1 TAATTAAATAATTAATTATTT
19552678 GCATTTTGAT
Statistics
Matches: 670, Mismatches: 44, Indels: 47
0.88 0.06 0.06
Matches are distributed among these distances:
112 6 0.01
113 35 0.05
114 88 0.13
115 70 0.10
116 5 0.01
117 2 0.00
118 1 0.00
119 59 0.09
120 61 0.09
121 148 0.22
122 188 0.28
123 7 0.01
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (121 bp):
TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
AATTAAATAATTTAATATTTTGAATTAAATATTTGATTTAAGGTTTAATAAATAAC
Found at i:19552260 original size:546 final size:537
Alignment explanation
Indices: 19551273--19552379 Score: 1781
Period size: 546 Copynumber: 2.0 Consensus size: 537
19551263 AACAAATAAC
* * * *
19551273 TAATTAAATAATTAATTATTTCAATATTTCTTATGTTTTTAATAATTTAATATTTATTTAAATAT
1 TAATTAAATAATTAATTATTTTAACATTTCTTATATTTTTAATAATTTAATATATATTTAAATAT
* * *
19551338 AATTATATAATTTAATATTTTGAATTAAATATTTTGATTTAAGGTTTAATAAATAACTAATTAAT
66 AATTAAATAATTTAATATTTTAAATTAAATATTTTGATTTAAGGTTTAATAAAT-A-TAAATAAT
*
19551403 TAATTAATTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAATATAATTAAATAATTT
129 TAATTAATTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAAATAATTAAATAATTT
* *
19551468 AATATTTTGAATTAAATATTTGAGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTT
194 AATATTTTGAATTAAATATTTGAGTTTAGAGTTTAATAAATAAATAATTAAATAATTAATTATTT
* *
19551533 TAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAATATAATTTAATTATTTAATATTTT
259 TAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAATATAATTAAATAATTTAATATTTT
* *
19551598 GAATTAAATAATTTGATTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTCAATATTT
324 GAATGAAATAATTTGATTTAAGGTTTAATAAATAACTAATTAAATAATTAATTATTTCAATATTT
*
19551663 ATTATGTTTTTAATAATTTAATATTTATTTAAATATAATTTAATTATTTAATATTTTGAATTAAA
389 ATTATGTTTTTAATAATTTAATATTTATTTAAATATAATTTAATAATTTAATATTTTGAATTAAA
**
19551728 TATTTCGATTTAAGGTTTAATAATAAATAACTAATTAAATAATTAATTATTTTAATATTTTTTTC
454 TATTTC-------GG-TT--TAATAAATAACTAATTAAATAATTAATTATTTTAATA-TTTGCTC
*
19551793 TATTTTTAATAATTGAATATTTATTTAATA
508 TAGTTTTAATAATTGAATATTTATTTAATA
* *
19551823 TAATTAAATAATTAATTATTTTAACATTTGTTCTATTTTTAATAATTTAATATATATTTAAATAT
1 TAATTAAATAATTAATTATTTTAACATTTCTTATATTTTTAATAATTTAATATATATTTAAATAT
* *
19551888 AATTAAATAATTTTATATTTTAAATTAAATATTTTTATTTAAGGTTTAAT-AAT-TAAATAATTA
66 AATTAAATAATTTAATATTTTAAATTAAATATTTTGATTTAAGGTTTAATAAATATAAATAATTA
19551951 ATTAATTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAAATAATTAAATAATTTAA
131 ATTAATTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAAATAATTAAATAATTTAA
* *
19552016 TATTTTGAATTAAATATTTGAGTTTAGAGTTTAATAAATAAATAATTAATTAATTATTTATTTTA
196 TATTTTGAATTAAATATTTGAGTTTAGAGTTTAATAAATAAATAATTAAATAATTAATTATTTTA
*
19552081 ATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGA
261 ATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAATATAATTAAATAATTTAATATTTTGA
** * *
19552146 ATGAAATGTTTTGATTTAAGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTCT
326 ATGAAATAATTTGATTTAAGGTTTAATAAATAACTAATTAAATAATTAATTATTTCAATATTTAT
*
19552211 TATGTTTTTAATAATTTAATATTTGTTTAAATATAA-TTATATAATTTAATATTTTGAATTAAAT
391 TATGTTTTTAATAATTTAATATTTATTTAAATATAATTTA-ATAATTTAATATTTTGAATTAAAT
19552275 ATTTCGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTGCTCTAGTTTTAATAA
455 ATTTCGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTGCTCTAGTTTTAATAA
19552340 TTGAATATTTATTTAATA
520 TTGAATATTTATTTAATA
19552358 TAATTAAATAATTTAA-TATTTT
1 TAATTAAATAA-TTAATTATTTT
19552380 GAATTAAATA
Statistics
Matches: 525, Mismatches: 30, Indels: 19
0.91 0.05 0.03
Matches are distributed among these distances:
535 51 0.10
536 41 0.08
538 2 0.00
539 2 0.00
545 3 0.01
546 318 0.61
549 3 0.01
550 105 0.20
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (537 bp):
TAATTAAATAATTAATTATTTTAACATTTCTTATATTTTTAATAATTTAATATATATTTAAATAT
AATTAAATAATTTAATATTTTAAATTAAATATTTTGATTTAAGGTTTAATAAATATAAATAATTA
ATTAATTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAAATAATTAAATAATTTAA
TATTTTGAATTAAATATTTGAGTTTAGAGTTTAATAAATAAATAATTAAATAATTAATTATTTTA
ATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAATATAATTAAATAATTTAATATTTTGA
ATGAAATAATTTGATTTAAGGTTTAATAAATAACTAATTAAATAATTAATTATTTCAATATTTAT
TATGTTTTTAATAATTTAATATTTATTTAAATATAATTTAATAATTTAATATTTTGAATTAAATA
TTTCGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAATATTTGCTCTAGTTTTAATAAT
TGAATATTTATTTAATA
Found at i:19552377 original size:358 final size:355
Alignment explanation
Indices: 19551823--19552677 Score: 1318
Period size: 358 Copynumber: 2.4 Consensus size: 355
19551813 TTATTTAATA
* *
19551823 TAATTAAATAATTAATTATTTTAACATTTGTTCTATTTTTAATAATTTAATATATATTTAAATAT
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
* * *** ****
19551888 AATTAAATAATTTTATATTTTAAATTAAATATTTTTATTTAAGGTTTAA-TAATTAAATAATTAA
66 AATTAAATAATTTAATATTTTGAATTAAATATTTCGGTTTAATAAATAACTAATTAAATAATTAA
* * *
19551952 TTAATTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAAATAATTAAATAATTTAAT
131 TTATTTTAATATTTGCTCTAGTTTTAATAATTGAATATTTATTTAAAATAATTAAATAATTTAAT
* *
19552017 ATTTTGAATTAAATATTTGAGTTTAGAGTTTAATAAATAAATAATTAATTAATTATTTATTTTAA
196 ATTTTGAATTAAATATTTGAGTTTAGAGTTTAATAAATAAATAATTAAATAATTAATTATTTTAA
19552082 TATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATATAATTAAATAATTTAATATTTTGAA
261 TATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT-A--AAATAATTTAATATTTTGAA
* *
19552147 TGAAATGTTTTGATTTAAGGTTTAATAAATAAC
323 TGAAATATTTCGATTTAAGGTTTAATAAATAAC
* * * *
19552180 TAATTAAATAATTAATTATTTTAATATTTCTTATGTTTTTAATAATTTAATATTTGTTTAAATAT
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
*
19552245 AATTATATAATTTAATATTTTGAATTAAATATTTCGGTTTAATAAATAACTAATTAAATAATTAA
66 AATTAAATAATTTAATATTTTGAATTAAATATTTCGGTTTAATAAATAACTAATTAAATAATTAA
*
19552310 TTATTTTAATATTTGCTCTAGTTTTAATAATTGAATATTTATTTAATATAATTAAATAATTTAAT
131 TTATTTTAATATTTGCTCTAGTTTTAATAATTGAATATTTATTTAAAATAATTAAATAATTTAAT
* *
19552375 ATTTTGAATTAAATATTTGAGTTTAGGGTTTAATAAATAACTAATTAAATAATTAATTATTTTAA
196 ATTTTGAATTAAATATTTGAGTTTAGAGTTTAATAAATAAATAATTAAATAATTAATTATTTTAA
* *
19552440 TATTTGTTCTGTTTTTAATAATTTAATATTTATTTAAATATAAAATAATTTAATATTTTGAATTA
261 TATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATATAAAATAATTTAATATTTTGAATGA
19552505 AATATTTCGATTTAAGGTTTAATAAATAAC
326 AATATTTCGATTTAAGGTTTAATAAATAAC
* *
19552535 TAATGTCAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTT-AATA
1 TAAT-TAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATA
*
19552599 TAATTAAATAATTTAATATTTTGAATTAAATATTTAAGTTTAGGGTTTAATAAATAACTAATTAA
65 TAATTAAATAATTTAATATTTTGAATT-AA-A--T-A-TTT-CGGTTTAATAAATAACTAATTAA
19552664 ATAATTAATTATTT
123 ATAATTAATTATTT
19552678 GCATTTTGAT
Statistics
Matches: 453, Mismatches: 36, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
355 84 0.19
356 51 0.11
357 100 0.22
358 177 0.39
359 1 0.00
360 1 0.00
361 3 0.01
362 36 0.08
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (355 bp):
TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
AATTAAATAATTTAATATTTTGAATTAAATATTTCGGTTTAATAAATAACTAATTAAATAATTAA
TTATTTTAATATTTGCTCTAGTTTTAATAATTGAATATTTATTTAAAATAATTAAATAATTTAAT
ATTTTGAATTAAATATTTGAGTTTAGAGTTTAATAAATAAATAATTAAATAATTAATTATTTTAA
TATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATATAAAATAATTTAATATTTTGAATGA
AATATTTCGATTTAAGGTTTAATAAATAAC
Found at i:19552478 original size:66 final size:63
Alignment explanation
Indices: 19552416--19552620 Score: 166
Period size: 61 Copynumber: 3.3 Consensus size: 63
19552406 AATAAATAAC
19552416 TAATTAAATAA-TTAATTATTTTAATATTTGTTCTGTTTTTAATAATTTAATATTTATTTAA-A
1 TAATTAAATAATTTAA-TATTTTAATATTTGTTCTGTTTTTAATAATTTAATATTTATTTAATA
* * * ** *
19552478 T-ATAAAATAATTTAATATTTTGAATTAAATAT-TTC-G-ATTTAA-GGTTTAATA---A-ATAA
1 TAATTAAATAATTTAATATTTT-AA-T--ATTTGTTCTGTTTTTAATAATTTAATATTTATTTAA
*
19552534 -C
62 TA
* * *
19552535 TAATGTCAATAA-TTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAATA
1 TAAT-TAAATAATTTAA-TATTTTAATATTTGTTCTGTTTTTAATAATTTAATATTTATTTAATA
19552599 TAATTAAATAATTTAATATTTT
1 TAATTAAATAATTTAATATTTT
19552621 GAATTAAATA
Statistics
Matches: 107, Mismatches: 18, Indels: 35
0.67 0.11 0.22
Matches are distributed among these distances:
55 3 0.03
56 3 0.03
57 5 0.05
58 14 0.13
59 17 0.16
61 21 0.20
62 13 0.12
63 17 0.16
64 11 0.10
65 3 0.03
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.52
Consensus pattern (63 bp):
TAATTAAATAATTTAATATTTTAATATTTGTTCTGTTTTTAATAATTTAATATTTATTTAATA
Found at i:19552624 original size:241 final size:238
Alignment explanation
Indices: 19551823--19552677 Score: 1231
Period size: 241 Copynumber: 3.6 Consensus size: 238
19551813 TTATTTAATA
* * *
19551823 TAATTAAATAATTAATTATTTTAACATTTGTTCTATTTTTAATAATTTAATATATATTTAAATAT
1 TAATT-AATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAATAT
* * *
19551888 AATTAAATAATTTTATATTTTAAATTAAATATTTTTATTTAAGG--T--T---TAA-TAATTAAA
65 AATTAAATAATTTAATATTTTGAATTAAATA-TTTGATTTAAGGTTTAATAAATAACTAATTAAA
* * * *
19551945 TAATTAATTAATTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAAATAATTAAATA
129 TAATTAATTATTTTAATATTTGTTCTGTTTTTAATAATTTAATATTTATTT-AAAT-ATAAAATA
*
19552010 ATTTAATATTTTGAATTAAATATTT-GAGTTTAGAGTTTAATAAATAAA
192 ATTTAATATTTTGAATTAAATATTTCGA-TTTAG-GTTTAATAAATAAC
* *
19552058 TAATTAATTAATTATTTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
1 TAATTAA-TAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAATAT
* *
19552123 AATTAAATAATTTAATATTTTGAATGAAATGTTTTGATTTAAGGTTTAATAAATAACTAATTAAA
65 AATTAAATAATTTAATATTTTGAATTAAAT-ATTTGATTTAAGGTTTAATAAATAACTAATTAAA
* * *
19552188 TAATTAATTATTTTAATATTTCTTATGTTTTTAATAATTTAATATTTGTTTAAATATAATTATAT
129 TAATTAATTATTTTAATATTTGTTCTGTTTTTAATAATTTAATATTTATTTAAATATAA--A-AT
19552253 AATTTAATATTTTGAATTAAATATTTC------GGTTTAATAAATAAC
191 AATTTAATATTTTGAATTAAATATTTCGATTTAGGTTTAATAAATAAC
* *
19552295 TAATTAAATAATTAATTATTTTAATATTTGCTCTAGTTTTAATAATTGAATATTTATTT-AATAT
1 TAATT-AATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAATAT
*
19552359 AATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTTAGGGTTTAATAAATAACTAATTAAA
65 AATTAAATAATTTAATATTTTGAATTAAATATTTGA-TTTAAGGTTTAATAAATAACTAATTAAA
19552424 TAATTAATTATTTTAATATTTGTTCTGTTTTTAATAATTTAATATTTATTTAAATATAAAATAAT
129 TAATTAATTATTTTAATATTTGTTCTGTTTTTAATAATTTAATATTTATTTAAATATAAAATAAT
19552489 TTAATATTTTGAATTAAATATTTCGATTTAAGGTTTAATAAATAAC
194 TTAATATTTTGAATTAAATATTTCGATTT-AGGTTTAATAAATAAC
19552535 TAATGTCAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTT-AATA
1 TAAT-T-AATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAATA
* *
19552599 TAATTAAATAATTTAATATTTTGAATTAAATATTTAAGTTTAGGGTTTAATAAATAACTAATTAA
64 TAATTAAATAATTTAATATTTTGAATTAAATATTTGA-TTTAAGGTTTAATAAATAACTAATTAA
19552664 ATAATTAATTATTT
128 ATAATTAATTATTT
19552678 GCATTTTGAT
Statistics
Matches: 566, Mismatches: 30, Indels: 42
0.89 0.05 0.07
Matches are distributed among these distances:
233 29 0.05
234 3 0.01
235 102 0.18
236 117 0.21
237 66 0.12
238 3 0.01
239 1 0.00
240 19 0.03
241 137 0.24
242 7 0.01
243 54 0.10
244 28 0.05
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (238 bp):
TAATTAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAAATATA
ATTAAATAATTTAATATTTTGAATTAAATATTTGATTTAAGGTTTAATAAATAACTAATTAAATA
ATTAATTATTTTAATATTTGTTCTGTTTTTAATAATTTAATATTTATTTAAATATAAAATAATTT
AATATTTTGAATTAAATATTTCGATTTAGGTTTAATAAATAAC
Found at i:19554825 original size:18 final size:18
Alignment explanation
Indices: 19554802--19554838 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
19554792 GGAGAATGAA
*
19554802 ATTAGGGATTTAGAAATG
1 ATTAGGAATTTAGAAATG
*
19554820 ATTAGGAATTTTGAAATG
1 ATTAGGAATTTAGAAATG
19554838 A
1 A
19554839 AAGAGAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
ATTAGGAATTTAGAAATG
Found at i:19556654 original size:22 final size:22
Alignment explanation
Indices: 19556626--19556669 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
19556616 CATTTCTAGG
19556626 TAATAA-TAAAAATATCTTATAC
1 TAATAATTAAAAATA-CTTATAC
*
19556648 TAATAATTAACAATACTTATAC
1 TAATAATTAAAAATACTTATAC
19556670 CAATCGAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.36
Consensus pattern (22 bp):
TAATAATTAAAAATACTTATAC
Found at i:19556899 original size:41 final size:41
Alignment explanation
Indices: 19556842--19557141 Score: 255
Period size: 41 Copynumber: 7.1 Consensus size: 41
19556832 TGTAAATAAA
* * *
19556842 TTAGCAGCGTTTTTCCAAAAATGCCGCTAATGCTCTGACCT
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAATGCTCTGACCT
*
19556883 TTAGCGGCGCTTTTCCAAAAACGCCACTAATGCTCTGACCT
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAATGCTCTGACCT
* *
19556924 TTAGCGGTGC-TTTCACATAAACGCCGCTAATGCTCTGACCT
1 TTAGCGGCGCTTTTC-CAAAAACGCCGCTAATGCTCTGACCT
* * * *
19556965 TTAGCGGCGATTAGCGGCGCCTTCACATAAAA-ACCGCTAATGATTTGACCT
1 TTAGCGGCGCTT---------TTC-CA-AAAACGCCGCTAATGCTCTGACCT
* *** * *
19557016 TTAGCGACGCTTCGACAAAAACGTCGCTAATGCTCTAACCT
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAATGCTCTGACCT
* ***
19557057 TTAACGGCGCTTCGACAAAAACGCCGCTAATGCTCTGACCT
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAATGCTCTGACCT
* * *
19557098 TTAGTGGCGC-TTTCTAAAAAACGCCGCTAATGCTCTGATCT
1 TTAGCGGCGCTTTTC-CAAAAACGCCGCTAATGCTCTGACCT
19557139 TTA
1 TTA
19557142 ACGACATTTT
Statistics
Matches: 211, Mismatches: 34, Indels: 28
0.77 0.12 0.10
Matches are distributed among these distances:
40 9 0.04
41 166 0.79
42 1 0.00
51 32 0.15
52 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (41 bp):
TTAGCGGCGCTTTTCCAAAAACGCCGCTAATGCTCTGACCT
Found at i:19557002 original size:51 final size:51
Alignment explanation
Indices: 19556924--19557021 Score: 142
Period size: 51 Copynumber: 1.9 Consensus size: 51
19556914 GCTCTGACCT
* * ** *
19556924 TTAGCGGTGCTTTCACATAAACGCCGCTAATGCTCTGACCTTTAGCGGCGA
1 TTAGCGGCGCCTTCACATAAAAACCGCTAATGATCTGACCTTTAGCGGCGA
*
19556975 TTAGCGGCGCCTTCACATAAAAACCGCTAATGATTTGACCTTTAGCG
1 TTAGCGGCGCCTTCACATAAAAACCGCTAATGATCTGACCTTTAGCG
19557022 ACGCTTCGAC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (51 bp):
TTAGCGGCGCCTTCACATAAAAACCGCTAATGATCTGACCTTTAGCGGCGA
Found at i:19557079 original size:133 final size:133
Alignment explanation
Indices: 19556865--19557106 Score: 351
Period size: 133 Copynumber: 1.8 Consensus size: 133
19556855 TCCAAAAATG
* * *** * *
19556865 CCGCTAATGCTCTGACCTTTAGCGGCGCTTTTCCAAAAACGCCACTAATGCTCTGACCTTTAGCG
1 CCGCTAATGATCTGACCTTTAGCGACGCTTCGACAAAAACGCCACTAATGCTCTAACCTTTAACG
* *
19556930 GTGCTTTCACATAAACGCCGCTAATGCTCTGACCTTTAGCGGCGATTAGCGGCGCCTTCACATAA
66 GCGCTTTCACAAAAACGCCGCTAATGCTCTGACCTTTAGCGGCGATTAGCGGCGCCTTCACATAA
19556995 AAA
131 AAA
* * *
19556998 CCGCTAATGATTTGACCTTTAGCGACGCTTCGACAAAAACGTCGCTAATGCTCTAACCTTTAACG
1 CCGCTAATGATCTGACCTTTAGCGACGCTTCGACAAAAACGCCACTAATGCTCTAACCTTTAACG
*
19557063 GCGC-TTCGACAAAAACGCCGCTAATGCTCTGACCTTTAGTGGCG
66 GCGCTTTC-ACAAAAACGCCGCTAATGCTCTGACCTTTAGCGGCG
19557107 CTTTCTAAAA
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
132 3 0.03
133 92 0.97
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (133 bp):
CCGCTAATGATCTGACCTTTAGCGACGCTTCGACAAAAACGCCACTAATGCTCTAACCTTTAACG
GCGCTTTCACAAAAACGCCGCTAATGCTCTGACCTTTAGCGGCGATTAGCGGCGCCTTCACATAA
AAA
Found at i:19557792 original size:19 final size:19
Alignment explanation
Indices: 19557768--19557805 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
19557758 ACACCACACG
*
19557768 ATCATGTGGTAGGCCGTGT
1 ATCATGTGATAGGCCGTGT
19557787 ATCATGTGATAGGCCGTGT
1 ATCATGTGATAGGCCGTGT
19557806 GGGCCACACG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (19 bp):
ATCATGTGATAGGCCGTGT
Found at i:19558204 original size:2 final size:2
Alignment explanation
Indices: 19558197--19558222 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
19558187 TCTGGTGGCT
19558197 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
19558223 TATATTCGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:19558969 original size:2 final size:2
Alignment explanation
Indices: 19558956--19559013 Score: 89
Period size: 2 Copynumber: 29.0 Consensus size: 2
19558946 GTACATACAA
* *
19558956 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
19558998 AT AT AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
19559014 CTGTTATATT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:19562652 original size:384 final size:384
Alignment explanation
Indices: 19561943--19562711 Score: 1448
Period size: 384 Copynumber: 2.0 Consensus size: 384
19561933 TACCCGAGGA
*
19561943 TCCAAGTTAATAAGGCTTATTCACGGGCCCCTAATATCCCTACTTTTCTCAAACGGTTGATGAAC
1 TCCAAGTTAATAAGGCTTATTCACGGGCCCCTAATATCCCTACTTTTCTCAAACGATTGATGAAC
19562008 ATTACGGGGATGAGTGAGGATTGGATTTCGGCACGGATTAAGGTGAAAGGCGACCATAAGTGCAT
66 ATTACGGGGATGAGTGAGGATTGGATTTCGGCACGGATTAAGGTGAAAGGCGACCATAAGTGCAT
19562073 CACTTGGAAGAGCTTGCGAGATTTGATCCTAGCACATCCGGATGAAAGAAAGAAAGTTGGCATTT
131 CACTTGGAAGAGCTTGCGAGATTTGATCCTAGCACATCCGGATGAAAGAAAGAAAGTTGGCATTT
* * *
19562138 TTGCCCTGAGTTTGTACGGCTTGATGGTCTTTCCTAAAGCATTAGGGCATATAGAAGATGCAGTT
196 TTGCCCTGAGTTTGTACAGCTTGATGATCTTTCCTAAAGCATTAGGGCATATAGAAGACGCAGTT
* *
19562203 ACCGACCTATTCGATCGTCTCGACAAAAGAGTTACTCCCGTTCTGACGATTCTGGCCGAGACTTT
261 ACCGACCTATTCGATCGTCTCGACAAAAGAGTTACTCCCGTTCTGACAATTCTGGCAGAGACTTT
* *
19562268 CATATCCTTGAACGCTTGTCGAAGAGAAGGAGAGGGAAGATTCATTGGTTACGCACAGT
326 CATATCCTTGAACACCTGTCGAAGAGAAGGAGAGGGAAGATTCATTGGTTACGCACAGT
19562327 TCCAAGTTAATAAGGCTTATTCACGGGCCCCTAATATCCCTACTTTTCTCAAACGATTGATGAAC
1 TCCAAGTTAATAAGGCTTATTCACGGGCCCCTAATATCCCTACTTTTCTCAAACGATTGATGAAC
*
19562392 ATTACGGGGATGAGTGAGGATTGGGTTTCGGCACGGATTAAGGTGAAAGGCGACCATAAGTGCAT
66 ATTACGGGGATGAGTGAGGATTGGATTTCGGCACGGATTAAGGTGAAAGGCGACCATAAGTGCAT
19562457 CACTTGGAAGAGCTTGCGAGATTTGATCCTAGCACATCCGGATGAAAGAAAGAAAGTTGGCATTT
131 CACTTGGAAGAGCTTGCGAGATTTGATCCTAGCACATCCGGATGAAAGAAAGAAAGTTGGCATTT
*
19562522 TTGCCCTGAGTTTGTACAGCTTGATGATCTTTCCTAAAGCATTAGGGCATATAGAAGACGTAGTT
196 TTGCCCTGAGTTTGTACAGCTTGATGATCTTTCCTAAAGCATTAGGGCATATAGAAGACGCAGTT
19562587 ACCGACCTATTCGATCGTCTCGACAAAAGAGTTACTCCCGTTCTGACAATTCTGGCAGAGACTTT
261 ACCGACCTATTCGATCGTCTCGACAAAAGAGTTACTCCCGTTCTGACAATTCTGGCAGAGACTTT
19562652 CATATCCTTGAACACCTGTCGAAGAGAAGGAGAGGGAAGATTCATTGGTTACGCACAGT
326 CATATCCTTGAACACCTGTCGAAGAGAAGGAGAGGGAAGATTCATTGGTTACGCACAGT
19562711 T
1 T
19562712 ATTATTGGTA
Statistics
Matches: 375, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
384 375 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (384 bp):
TCCAAGTTAATAAGGCTTATTCACGGGCCCCTAATATCCCTACTTTTCTCAAACGATTGATGAAC
ATTACGGGGATGAGTGAGGATTGGATTTCGGCACGGATTAAGGTGAAAGGCGACCATAAGTGCAT
CACTTGGAAGAGCTTGCGAGATTTGATCCTAGCACATCCGGATGAAAGAAAGAAAGTTGGCATTT
TTGCCCTGAGTTTGTACAGCTTGATGATCTTTCCTAAAGCATTAGGGCATATAGAAGACGCAGTT
ACCGACCTATTCGATCGTCTCGACAAAAGAGTTACTCCCGTTCTGACAATTCTGGCAGAGACTTT
CATATCCTTGAACACCTGTCGAAGAGAAGGAGAGGGAAGATTCATTGGTTACGCACAGT
Found at i:19568323 original size:21 final size:21
Alignment explanation
Indices: 19568297--19568338 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
19568287 TTATTAAAGA
19568297 TAAAAGAGGAGGTCAAAAAAC
1 TAAAAGAGGAGGTCAAAAAAC
*
19568318 TAAAAGAGGAGGTTAAAAAAC
1 TAAAAGAGGAGGTCAAAAAAC
19568339 AGTTTGACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.57, C:0.07, G:0.24, T:0.12
Consensus pattern (21 bp):
TAAAAGAGGAGGTCAAAAAAC
Found at i:19572456 original size:45 final size:45
Alignment explanation
Indices: 19572362--19572546 Score: 177
Period size: 45 Copynumber: 4.2 Consensus size: 45
19572352 CCGATCTTGA
* *
19572362 GGCAGATTG-AGCC--ATTCCAAACTTTTACCCCTAAGTCAAGAG
1 GGCAGATTGAAGCCATATTCCAATCATTTACCCCTAAGTCAAGAG
* * *
19572404 CGACAGATTGAAGCCATCA-TCCAATCATTTATCCC-GAGTC-AGAAG
1 -GGCAGATTGAAGCCAT-ATTCCAATCATTTACCCCTAAGTCAAG-AG
*
19572449 AGGCAGATTGAAGCCATATTCCAATCTTTTACCCCTAAGTCAAGAG
1 -GGCAGATTGAAGCCATATTCCAATCATTTACCCCTAAGTCAAGAG
* * ** *
19572495 GGCAGATTGAGGCCACATTCTGATCTTTTACCCCT-AGTCAAGAGG
1 GGCAGATTGAAGCCATATTCCAATCATTTACCCCTAAGTCAAGA-G
19572540 GGCAGAT
1 GGCAGAT
19572547 CAAACCCCAT
Statistics
Matches: 119, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
43 8 0.07
44 15 0.13
45 74 0.62
46 19 0.16
47 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (45 bp):
GGCAGATTGAAGCCATATTCCAATCATTTACCCCTAAGTCAAGAG
Found at i:19573026 original size:15 final size:16
Alignment explanation
Indices: 19573006--19573035 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
19572996 AGTTGACCAA
19573006 ATCAAT-GAAACAGAG
1 ATCAATAGAAACAGAG
19573021 ATCAATAGAAACAGA
1 ATCAATAGAAACAGA
19573036 TACAGTGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (16 bp):
ATCAATAGAAACAGAG
Found at i:19573745 original size:6 final size:6
Alignment explanation
Indices: 19573734--19573779 Score: 92
Period size: 6 Copynumber: 7.7 Consensus size: 6
19573724 ACATACGAAT
19573734 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATAT
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATAT
19573780 CTGTTATATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (6 bp):
ATATAC
Found at i:19573872 original size:17 final size:16
Alignment explanation
Indices: 19573832--19573873 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
19573822 TATAATATAC
19573832 ATATATATTTTTTCAT
1 ATATATATTTTTTCAT
* *
19573848 AT-TCTATTTTTTTAT
1 ATATATATTTTTTCAT
19573863 ATATAATATTT
1 ATAT-ATATTT
19573874 CGAAGTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 13 0.62
16 3 0.14
17 5 0.24
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (16 bp):
ATATATATTTTTTCAT
Found at i:19581516 original size:49 final size:49
Alignment explanation
Indices: 19581419--19581631 Score: 223
Period size: 49 Copynumber: 4.3 Consensus size: 49
19581409 TCAAGGAGAT
* * ** **
19581419 TGGATTCGCCATTGCGGCTTAAACCTTTTTCTTTGTATCTTCGTGGTAC
1 TGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATATCTTCGTGGTAC
* * *
19581468 TGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCAT-GCTTCTGAGGTAC
1 TGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATATCTTC-GTGGTAC
* * * * * *
19581517 -GAGGTTCGTCATTACGACTTAAACCTTTCCCTTCATATCTTCGTGGTAC
1 TG-GATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATATCTTCGTGGTAC
* * *
19581566 TGGATTTGCCGTTGTGGTTTAAATCTTTCCCTTCATTATCTTCGTGGTAC
1 TGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCA-TATCTTCGTGGTAC
19581616 TGGATTCGCCGTTGCG
1 TGGATTCGCCGTTGCG
19581632 TCTTTCCCTT
Statistics
Matches: 130, Mismatches: 29, Indels: 9
0.77 0.17 0.05
Matches are distributed among these distances:
48 5 0.04
49 92 0.71
50 33 0.25
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.40
Consensus pattern (49 bp):
TGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATATCTTCGTGGTAC
Found at i:19586274 original size:23 final size:23
Alignment explanation
Indices: 19586248--19586296 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
19586238 ATCGTGCTCT
*
19586248 TCTCATTTCTCGTTTCCTCTCA-A
1 TCTCATTCCTCGTTTCCT-TCATA
* *
19586271 TCTCCTTCCTCTTTTCCTTCATA
1 TCTCATTCCTCGTTTCCTTCATA
19586294 TCT
1 TCT
19586297 GGCTTGTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 3 0.14
23 19 0.86
ACGTcount: A:0.10, C:0.37, G:0.02, T:0.51
Consensus pattern (23 bp):
TCTCATTCCTCGTTTCCTTCATA
Found at i:19596314 original size:24 final size:23
Alignment explanation
Indices: 19596273--19596323 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
19596263 ACATAGAAAT
19596273 AATT-AATTATTTAAATATT-TA
1 AATTAAATTATTTAAATATTATA
*
19596294 ATATTAAATTATTTTATATATTATA
1 A-ATTAAATTA-TTTAAATATTATA
19596319 AATTA
1 AATTA
19596324 TGTGACATCC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.04
22 3 0.12
23 5 0.20
24 13 0.52
25 3 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
AATTAAATTATTTAAATATTATA
Found at i:19599698 original size:26 final size:26
Alignment explanation
Indices: 19599669--19599751 Score: 112
Period size: 26 Copynumber: 3.2 Consensus size: 26
19599659 GTGAGCAGCA
*
19599669 TCGTAAAAGCTAAACTTTGTCTGGGC
1 TCGTAAAAGCTAAACTTTGTCTGGAC
* *
19599695 TCGTAAAAGCTAAACTCTGTCAGGAC
1 TCGTAAAAGCTAAACTTTGTCTGGAC
* * *
19599721 TTGTAAGAGCTAAACTTTATCTGGAC
1 TCGTAAAAGCTAAACTTTGTCTGGAC
19599747 TCGTA
1 TCGTA
19599752 TGAGCTAATT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (26 bp):
TCGTAAAAGCTAAACTTTGTCTGGAC
Found at i:19608531 original size:23 final size:23
Alignment explanation
Indices: 19608505--19608551 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
19608495 AAAAAGCGAA
*
19608505 AAAGAAACGGCGTGCTAACAAGC
1 AAAGAAACAGCGTGCTAACAAGC
* * *
19608528 AAAGGAATAGCGTGCTAAGAAGC
1 AAAGAAACAGCGTGCTAACAAGC
19608551 A
1 A
19608552 GAGGATTGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.45, C:0.17, G:0.28, T:0.11
Consensus pattern (23 bp):
AAAGAAACAGCGTGCTAACAAGC
Found at i:19610784 original size:40 final size:40
Alignment explanation
Indices: 19610740--19610836 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
19610730 TAATATTTTC
* * **
19610740 AAAATATTTTCAGTTGAGGAAAATCCTCTAATTGTTTTAG
1 AAAATATTTTCAGTTGAGGAAAATCCTCTAACTATTGCAG
* * * *
19610780 AAAATATTTTCAATTAAGGAAAATTCTCTCACTATTGCAG
1 AAAATATTTTCAGTTGAGGAAAATCCTCTAACTATTGCAG
19610820 AAAATATTTTCAGTTGA
1 AAAATATTTTCAGTTGA
19610837 AAAAAATCTT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.38
Consensus pattern (40 bp):
AAAATATTTTCAGTTGAGGAAAATCCTCTAACTATTGCAG
Found at i:19616334 original size:24 final size:22
Alignment explanation
Indices: 19616301--19616344 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
19616291 TTGTTGAATC
19616301 TTTAAAGTTTTCTATTTGTTATTT
1 TTTAAAGTTTT-TATTT-TTATTT
*
19616325 TTTAATGTTTTTATTTTTAT
1 TTTAAAGTTTTTATTTTTAT
19616345 ATATATTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 5 0.26
24 10 0.53
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.70
Consensus pattern (22 bp):
TTTAAAGTTTTTATTTTTATTT
Found at i:19621584 original size:10 final size:11
Alignment explanation
Indices: 19621564--19621605 Score: 54
Period size: 10 Copynumber: 4.1 Consensus size: 11
19621554 GAATTTATAA
19621564 TTAATTATTAT
1 TTAATTATTAT
19621575 TTAATT-TTAT
1 TTAATTATTAT
19621585 TTAA-TA-TAT
1 TTAATTATTAT
*
19621594 TTTATTATTAT
1 TTAATTATTAT
19621605 T
1 T
19621606 CATCCATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
9 7 0.26
10 10 0.37
11 10 0.37
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTAATTATTAT
Found at i:19622264 original size:18 final size:18
Alignment explanation
Indices: 19622239--19622283 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
19622229 TTCTTAAAAA
19622239 TAAATTTTAT-AGCTTTT
1 TAAATTTTATGAGCTTTT
*
19622256 ATTAATTTTATGAGCTTTT
1 -TAAATTTTATGAGCTTTT
19622275 TAAATTTTA
1 TAAATTTTA
19622284 AAAAATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (18 bp):
TAAATTTTATGAGCTTTT
Found at i:19623224 original size:32 final size:32
Alignment explanation
Indices: 19623187--19623254 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
19623177 AAATTTATTT
*
19623187 TTTTCATAAAATAACAAATATTACTATCAATA
1 TTTTCATAAAATAAAAAATATTACTATCAATA
*
19623219 TTTTCATAAAGTAAAAAATATTACTATCAATA
1 TTTTCATAAAATAAAAAATATTACTATCAATA
19623251 TTTT
1 TTTT
19623255 ATTTTTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.47, C:0.10, G:0.01, T:0.41
Consensus pattern (32 bp):
TTTTCATAAAATAAAAAATATTACTATCAATA
Found at i:19624031 original size:19 final size:20
Alignment explanation
Indices: 19623995--19624032 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
19623985 AAAAACCCTC
* *
19623995 AAAACTTTTTATTTTCTCCA
1 AAAACTTTTTACTCTCTCCA
19624015 AAAAC-TTTTACTCTCTCC
1 AAAACTTTTTACTCTCTCC
19624033 TATTTTCCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAACTTTTTACTCTCTCCA
Found at i:19626496 original size:46 final size:45
Alignment explanation
Indices: 19626343--19626498 Score: 170
Period size: 46 Copynumber: 3.4 Consensus size: 45
19626333 TGGTCACTCG
* * *
19626343 TTAGGGTTGAACCTATATGAATAACATAATAGTTCCTAGTCACCCA
1 TTAGGGTTGAACCTACACGAATAACATAATAATT-CTAGTCACCCA
** * *
19626389 TTAGATTTGAACCTAGACGAATAACATAATAGTGTCTAGTCACCCA
1 TTAGGGTTGAACCTACACGAATAACATAATAAT-TCTAGTCACCCA
* * * *
19626435 TTAGGGTTAAACCTACACGAATAGA-ATAATAATGTCTGGTCACACG
1 TTAGGGTTGAACCTACACGAATA-ACATAATAAT-TCTAGTCACCCA
19626481 TTAGGGTTGAACCTACAC
1 TTAGGGTTGAACCTACAC
19626499 AACAATTAGC
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
46 93 0.98
47 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.28
Consensus pattern (45 bp):
TTAGGGTTGAACCTACACGAATAACATAATAATTCTAGTCACCCA
Found at i:19628573 original size:58 final size:58
Alignment explanation
Indices: 19628511--19628646 Score: 209
Period size: 58 Copynumber: 2.3 Consensus size: 58
19628501 TTGGATACCT
* ** *
19628511 GGGGGCAAAATGGTAATTTTGGTAAAATCGGGGTTAAAAATAGAATTTTGGAAGGTTC
1 GGGGGTAAAATGGTAATTTTGGTAAAATCAAGGTTAAAAATAGAATTTTAGAAGGTTC
* * *
19628569 GGGGGTAAAATGGTAATTTTGGTGAAATTAAGGTTAAAAATGGAATTTTAGAAGGTTC
1 GGGGGTAAAATGGTAATTTTGGTAAAATCAAGGTTAAAAATAGAATTTTAGAAGGTTC
19628627 GGGGGTAAAATGGTAATTTT
1 GGGGGTAAAATGGTAATTTT
19628647 TGGAAGTTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 71 1.00
ACGTcount: A:0.35, C:0.03, G:0.31, T:0.32
Consensus pattern (58 bp):
GGGGGTAAAATGGTAATTTTGGTAAAATCAAGGTTAAAAATAGAATTTTAGAAGGTTC
Found at i:19628574 original size:30 final size:29
Alignment explanation
Indices: 19628538--19628862 Score: 129
Period size: 29 Copynumber: 11.1 Consensus size: 29
19628528 TTTGGTAAAA
* *
19628538 TCGGGGTTAAAAATAGAATTTTGGAAGGT
1 TCGGGGGTAAAAATGGAATTTTGGAAGGT
*
19628567 TCGGGGGT-AAAATGGTAATTTTGGTGAA-AT
1 TCGGGGGTAAAAATGG-AATTTT-G-GAAGGT
** * *
19628597 T-AAGGTTAAAAATGGAATTTTAGAAGGT
1 TCGGGGGTAAAAATGGAATTTTGGAAGGT
19628625 TCGGGGGT-AAAATGGTAATTTTTGGAA-GT
1 TCGGGGGTAAAAATGG-AA-TTTTGGAAGGT
** * **
19628654 TTTGGGGT-AAAATGGTAATTTTTGG-TGAA
1 TCGGGGGTAAAAATGG-AA-TTTTGGAAGGT
* * * *
19628683 ACTGGGGTTAAAATGGAATTTTAGAAGGT
1 TCGGGGGTAAAAATGGAATTTTGGAAGGT
* * **
19628712 TCGAGGGT-AAGATGGTAATTTTTGGTGAA-AC
1 TCGGGGGTAAAAATGG-AA-TTTT-G-GAAGGT
* *
19628743 T-GGGGTTAAAAATGGAATTTTAGAAGGT
1 TCGGGGGTAAAAATGGAATTTTGGAAGGT
* * * *
19628771 TTGAGGGT-AAAGTGGTAATTTTCGGTGAA--A
1 TCGGGGGTAAAAATGG-AATTTT--G-GAAGGT
* * *
19628801 TCGGAGTTAAAAATGGAATTTTAGAAGGT
1 TCGGGGGTAAAAATGGAATTTTGGAAGGT
*
19628830 TCGGGGGT-AAAATGGTAATTTTTGGAAGTT
1 TCGGGGGTAAAAATGG-AA-TTTTGGAAGGT
19628860 TCG
1 TCG
19628863 AGATTAGAAT
Statistics
Matches: 217, Mismatches: 52, Indels: 53
0.67 0.16 0.16
Matches are distributed among these distances:
27 9 0.04
28 40 0.18
29 90 0.41
30 56 0.26
31 16 0.07
32 6 0.03
ACGTcount: A:0.32, C:0.03, G:0.31, T:0.34
Consensus pattern (29 bp):
TCGGGGGTAAAAATGGAATTTTGGAAGGT
Found at i:19628636 original size:87 final size:88
Alignment explanation
Indices: 19628538--19628736 Score: 255
Period size: 87 Copynumber: 2.3 Consensus size: 88
19628528 TTTGGTAAAA
* *
19628538 TCGGGGTTAAAAATAG-AA-TTTTGGAAGGTTCGGGGGTAAAATGGTAA-TTTTGGTGAAATTAA
1 TCGGGGGTAAAAATAGTAATTTTTGGAA-GTTCGGGGGTAAAATGGTAATTTTTGGTGAAACTAA
19628600 GGTTAAAAATGGAATTTTAGAAGGT
65 GGTT-AAAATGGAATTTTAGAAGGT
* ** **
19628625 TCGGGGGT-AAAATGGTAATTTTTGGAAGTTTTGGGGTAAAATGGTAATTTTTGGTGAAACTGGG
1 TCGGGGGTAAAAATAGTAATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAACTAAG
19628689 GTTAAAATGGAATTTTAGAAGGT
66 GTTAAAATGGAATTTTAGAAGGT
* * *
19628712 TCGAGGGT-AAGATGGTAATTTTTGG
1 TCGGGGGTAAAAATAGTAATTTTTGG
19628737 TGAAACTGGG
Statistics
Matches: 100, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
86 6 0.06
87 70 0.70
88 24 0.24
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.34
Consensus pattern (88 bp):
TCGGGGGTAAAAATAGTAATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAACTAAG
GTTAAAATGGAATTTTAGAAGGT
Found at i:19628690 original size:58 final size:59
Alignment explanation
Indices: 19628633--19628854 Score: 315
Period size: 59 Copynumber: 3.8 Consensus size: 59
19628623 GTTCGGGGGT
* *
19628633 AAAATGGTAATTTTTGGAAGTTTTG-GGGTAAAATGGTAATTTTTGGTGAAACTGGGGTT-
1 AAAATGG-AA-TTTTAGAAGGTTTGAGGGTAAAATGGTAATTTTTGGTGAAACTGGGGTTA
* *
19628692 AAAATGGAATTTTAGAAGGTTCGAGGGTAAGATGGTAATTTTTGGTGAAACTGGGGTTA
1 AAAATGGAATTTTAGAAGGTTTGAGGGTAAAATGGTAATTTTTGGTGAAACTGGGGTTA
* * *
19628751 AAAATGGAATTTTAGAAGGTTTGAGGGTAAAGTGGTAATTTTCGGTGAAA-TCGGAGTTA
1 AAAATGGAATTTTAGAAGGTTTGAGGGTAAAATGGTAATTTTTGGTGAAACT-GGGGTTA
* *
19628810 AAAATGGAATTTTAGAAGGTTCGGGGGTAAAATGGTAATTTTTGG
1 AAAATGGAATTTTAGAAGGTTTGAGGGTAAAATGGTAATTTTTGG
19628855 AAGTTTCGAG
Statistics
Matches: 147, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
57 11 0.07
58 36 0.24
59 100 0.68
ACGTcount: A:0.32, C:0.03, G:0.31, T:0.34
Consensus pattern (59 bp):
AAAATGGAATTTTAGAAGGTTTGAGGGTAAAATGGTAATTTTTGGTGAAACTGGGGTTA
Found at i:19628747 original size:87 final size:87
Alignment explanation
Indices: 19628570--19628763 Score: 252
Period size: 87 Copynumber: 2.2 Consensus size: 87
19628560 GGAAGGTTCG
* *
19628570 GGGGTAAAATGGTAA-TTTTGGTGAAATTAAGGTTAAAAATGGAATTTTAGAAGGTTCGGGGGTA
1 GGGGTAAAATGGTAATTTTTGGTGAAACTAAGGTTAAAAATGGAATTTTAGAAGGTTCGAGGGTA
**
19628634 AAATGGTAATTTTTGGAAGTTTT
66 AAATGGTAATTTTTGGAAG-ACT
**
19628657 GGGGTAAAATGGTAATTTTTGGTGAAACTGGGGTT-AAAATGGAATTTTAGAAGGTTCGAGGGTA
1 GGGGTAAAATGGTAATTTTTGGTGAAACTAAGGTTAAAAATGGAATTTTAGAAGGTTCGAGGGTA
*
19628721 AGATGGTAATTTTTGGTGAA-ACT
66 AAATGGTAATTTTT-G-GAAGACT
19628744 GGGGTTAAAAATGG-AATTTT
1 GGGG-T-AAAATGGTAATTTT
19628764 AGAAGGTTTG
Statistics
Matches: 95, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
87 61 0.64
88 24 0.25
89 10 0.11
ACGTcount: A:0.32, C:0.02, G:0.31, T:0.35
Consensus pattern (87 bp):
GGGGTAAAATGGTAATTTTTGGTGAAACTAAGGTTAAAAATGGAATTTTAGAAGGTTCGAGGGTA
AAATGGTAATTTTTGGAAGACT
Found at i:19628787 original size:59 final size:59
Alignment explanation
Indices: 19628658--19628854 Score: 317
Period size: 59 Copynumber: 3.4 Consensus size: 59
19628648 GGAAGTTTTG
19628658 GGGTAAAATGGTAATTTTTGGTGAAACTGGGGTT-AAAATGGAATTTTAGAAGGTTCGA
1 GGGTAAAATGGTAATTTTTGGTGAAACTGGGGTTAAAAATGGAATTTTAGAAGGTTCGA
* *
19628716 GGGTAAGATGGTAATTTTTGGTGAAACTGGGGTTAAAAATGGAATTTTAGAAGGTTTGA
1 GGGTAAAATGGTAATTTTTGGTGAAACTGGGGTTAAAAATGGAATTTTAGAAGGTTCGA
* * * *
19628775 GGGTAAAGTGGTAATTTTCGGTGAAA-TCGGAGTTAAAAATGGAATTTTAGAAGGTTCGG
1 GGGTAAAATGGTAATTTTTGGTGAAACT-GGGGTTAAAAATGGAATTTTAGAAGGTTCGA
19628834 GGGTAAAATGGTAATTTTTGG
1 GGGTAAAATGGTAATTTTTGG
19628855 AAGTTTCGAG
Statistics
Matches: 127, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
58 34 0.27
59 93 0.73
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTGGTGAAACTGGGGTTAAAAATGGAATTTTAGAAGGTTCGA
Done.