Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 67 of 143
Found at i:21876043 original size:8 final size:8
Alignment explanation
Indices: 21876030--21876075 Score: 58
Period size: 9 Copynumber: 5.6 Consensus size: 8
21876020 ATTTATTTAT
*
21876030 ATAAATAG
1 ATAAATAA
21876038 ATAAATAA
1 ATAAATAA
21876046 ATAAA-AA
1 ATAAATAA
21876053 ATAAATAAA
1 ATAAAT-AA
21876062 ATAAATAAA
1 ATAAAT-AA
21876071 ATAAA
1 ATAAA
21876076 AATAGAATTG
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
7 7 0.20
8 12 0.34
9 16 0.46
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (8 bp):
ATAAATAA
Found at i:21876045 original size:4 final size:4
Alignment explanation
Indices: 21876030--21876075 Score: 58
Period size: 4 Copynumber: 11.2 Consensus size: 4
21876020 ATTTATTTAT
*
21876030 ATAA ATAG ATAA ATAA ATAA A-AA ATAA ATAAA ATAA ATAAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT-AA ATAA AT-AA ATAA A
21876076 AATAGAATTG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
3 3 0.08
4 26 0.70
5 8 0.22
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (4 bp):
ATAA
Found at i:21876079 original size:24 final size:23
Alignment explanation
Indices: 21876030--21876077 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 23
21876020 ATTTATTTAT
*
21876030 ATAAATAGATAAATAAATAAAAA
1 ATAAATAAATAAATAAATAAAAA
21876053 ATAAATAAAATAAATAAAATAAAAA
1 ATAAAT-AAATAAAT-AAATAAAAA
21876078 TAGAATTGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.27
24 7 0.32
25 9 0.41
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (23 bp):
ATAAATAAATAAATAAATAAAAA
Found at i:21878695 original size:13 final size:14
Alignment explanation
Indices: 21878666--21878699 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
21878656 AATCCACACT
21878666 TTTTTCTCATTCAA
1 TTTTTCTCATTCAA
*
21878680 TTTTTCTC-TTCCA
1 TTTTTCTCATTCAA
21878693 TTTTTCT
1 TTTTTCT
21878700 TTGTCGCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTTTCTCATTCAA
Found at i:21879578 original size:13 final size:13
Alignment explanation
Indices: 21879560--21879584 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21879550 TTTAATTTTT
21879560 CTTAGTTAAATTA
1 CTTAGTTAAATTA
21879573 CTTAGTTAAATT
1 CTTAGTTAAATT
21879585 TTAGTTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (13 bp):
CTTAGTTAAATTA
Found at i:21893724 original size:792 final size:792
Alignment explanation
Indices: 21889939--21900791 Score: 15599
Period size: 793 Copynumber: 13.7 Consensus size: 792
21889929 GGTTGCATGA
* * *
21889939 GAAAGTGTAAGGATTTTAAAAAGAAAGGTCGATTGCCAATCAAAGTTTACAAAAAATTGAGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
* * * * *
21890004 ATATCCGAAGATATAATGTGCTTTTCAATTCTCACGATCGAAATTAAGTTGTTGTTTTAGCCTTC
66 ATATCCGAAGATATAAGGTGCTTTTCAATTCTCACGATCGGAATTGAGTCGTTGCTTTAGCCTTC
*
21890069 GGCTAATTTTGGCACCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAAA
131 GGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAAA
* * * *
21890134 AGAAATAATTAAATGGCATCGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCCGA
196 AGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTGA
* * * * *
21890199 TTTAGAAGGCTTTTTGTTCTTCATTTAGGCTAAATTGGATAAAAATGAGGGGTTTTGATCGAAAG
261 TGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGGTTTTGATCGAAAG
*
21890264 AGTTTAATTAAAGTAAAATAAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTTA
326 AGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTTA
*
21890329 AGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTAACTCATTTCCAACCGATCATC-A
391 AGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATCGA
* * * *
21890393 ATTAAGAGTTTACTCTGAATAAATGCCGGTTATAGTCTACAAGACCCAACCCTTGTAACTTGTTT
456 A-TAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTT
* * * ** * *
21890458 TTCTATTCAGTAAAATGAAAATCCAAAATCAATTTTTGAATTTCAATTTTCTGGCTAGAGTAACC
520 TTCTCTCCGGT-AACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAACC
* * *
21890523 ACGACTATCGCCGTTAAAATAAAACAGTTTAAAATCTGGAAAAACCCGACTCGAACTATGTTGTC
584 ACGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGTC
* * * * *
21890588 TCAAT--G-TTCG-AT-C--TC-AATTTCCCTTACCGGACCACCGTTAAGTGTGTTCACAGGATG
649 TCAATGAGAATCGAATCCGATCTAAATTCCCTTAGCGGACCGCCGCTAAGTGTGTTCACAGGATG
* ** * * *
21890645 TCGAAAGTGCTACAAGCTTATCCTTTCTCCCGACTATAAATCGAAACAACCTTAAAACCAACGGG
714 TCGAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACGGG
*
21890710 CCATTTTTGAACTT
779 CCCTTTTTGAACTT
* * * *
21890724 GAAAGCGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCATGTTTGTAGAAAATTGAGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
*
21890789 ATATCCGAAGATATAAGGTGCTTTTCAATTCCTCACGATCGGAATTGAGCCGTTGCTTTAGCCTT
66 ATATCCGAAGATATAAGGTGCTTTTCAATT-CTCACGATCGGAATTGAGTCGTTGCTTTAGCCTT
*
21890854 CGGTTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAA
130 CGGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAA
* * * *
21890919 AAGAAATAATTAAATAGCGTAGTAAAGAGAAAAAGGGTCGATCCACAAGGAATTAGGAAATTCTA
195 AAGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTG
* * * * *
21890984 ATGTAAAAGACTTCTAGTTCTTGATTTAGGCGAAACGGGATAAAAATGGGGGGTTTTGATCGAAA
260 ATGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGGTTTTGATCGAAA
*
21891049 GAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAATGTAAATTT
325 GAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTT
* * * * *
21891114 AAGAAGAGACTCAGTTTAAGTATCAGCCTTAGGCTTCGATTTGACTCATTTTCAACTGATCATCG
390 AAGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATCG
* *
21891179 AATAAGATTTTACTCCGGATAAATGTCGGTTACAGTCTACAAGACCTAACCCTTGTAACTTGTTT
455 AATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTT
* * * * *
21891244 TTCTCTCAGGTAACCGAAAATCCAAAATCAATTTTTGAATTTCAGTCTTCTGGTTAGATTAACAA
520 TTCTCTCCGGTAACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAACCA
* * *
21891309 CGACTATTGCCGTTAGAATAAAACAGTTTAAAATCTAGAAAATCCCGACTCGGACTATCTTGTCT
585 CGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGTCT
*
21891374 CAATGAGAATCGAATCCGATCTAAATTTCCCTTAGCGGACCGCCGTTAAGTGTGTTCACAGGATG
650 CAATGAGAATCGAATCCGATCTAAA-TTCCCTTAGCGGACCGCCGCTAAGTGTGTTCACAGGATG
* * *
21891439 TCGAATGTGCTACAAGCCGATCCTTCTTCCCAACTCTAAATCGAAACAACCTTCGAACCAACGGG
714 TCGAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACGGG
*
21891504 CCCTTTTGGAACTT
779 CCCTTTTTGAACTT
* * *
21891518 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTACAGAAAATTGGGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
* * *
21891583 ACATCCGAAGATATAATGTGCTTTTCAATTCTCACGATCGTAATTGAGTCGTTGCTTTAGCCTTC
66 ATATCCGAAGATATAAGGTGCTTTTCAATTCTCACGATCGGAATTGAGTCGTTGCTTTAGCCTTC
*
21891648 GGCTAATTTTGGCGTCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAAA
131 GGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAAA
* * * * * *
21891713 AAAAATAATTAAATGGCATCGTAAAGAGAAGAAAGGTCTATCCACAGGGACTTAGGAAATT-TCG
196 AGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCT-G
* * * * * * *
21891777 ATGTAAAAGGCTTTTAGTTCTTCATTTAGGCTAAATTGGATAAAAATGAAGGGCTTTGATTGAAA
260 ATGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGGTTTTGATCGAAA
*
21891842 GAGTTTAATTAAAGTAAAATGAAGAAATAGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTT
325 GAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTT
* * * *
21891907 AAGAAGAAACTTAGTTTAAGTATCAGCCTCAGGCTTCGATTTAACTCATTTCAAACCGATCATCG
390 AAGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATCG
* * * *
21891972 ATTAAGAGTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCTAACCCTTGTAACTTGTTC
455 AATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTT
* * * * * *
21892037 TTCTATTCGGTAAACCAAAAATCTAAAATCAATTTTTGAATTTCAGTTTTCTGGTTAGAGTAACC
520 TTCTCTCCGGT-AACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAACC
* *
21892102 ACGACTATCGCCGTTAGAATAAAGCAGTTTAAAATCTGGAAAAACCCGACTCGGACTATGTTGTC
584 ACGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGTC
* * * *
21892167 TCAATGAGAATCGAATCCGATCTCAATTTCCCTTAGCGGACCGCCGCTAAGTGCGTTCACAAGAA
649 TCAATGAGAATCGAATCCGATCT-AAATTCCCTTAGCGGACCGCCGCTAAGTGTGTTCACAGGAT
* * *
21892232 ATTGAATGTGCTACAAGCCGATCCTTCCT-CCAACTATAAATCAAAACAACCTTCAAACCAACGG
713 GTCGAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACGG
*
21892296 GTCCTTTTTGAACTT
778 GCCCTTTTTGAACTT
* * * * *
21892311 GAAAGTGTAAAGATTTTAAAAGGAAAGACCGATTACCAATCCAAGTTTGCAGAAAATTGAGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
* *
21892376 ATATCCAAAGATATAAGGTGCTTTTCAATTCCTCACGATTGGAATTGAGTCGTTGCTTTAGCCTT
66 ATATCCGAAGATATAAGGTGCTTTTCAATT-CTCACGATCGGAATTGAGTCGTTGCTTTAGCCTT
* * * * *
21892441 CGGTTAATTTTGGCGTCAGTTTGACAAGCATCGTATACTGTCTAAATAATTATCCTTAATGTCAA
130 CGGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAA
* *
21892506 AAGAAATAATTAAATAGCTTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTA
195 AAGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTG
* **
21892571 ATGTAAAAGGCTTTTAGTTCTTGATTTAGGCGAAATTAGATAAAAATGGAGGGG-TTTGATCGAA
260 ATGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAAT-GAGGGGTTTTGATCGAA
*
21892635 AGAGTTTAATTTAAA-TAAAATAAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAAT
324 AGAGTTTAA-TTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAAT
* * *
21892699 TTAAAAAGAAACTCAGTTTAAGTATCAGTCTCAGGCTTCGCTTTGACTCATTTCCAACCAATCAT
388 TTAAGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCAT
* * * *
21892764 CGAATAAGATTTTACTCCGAATAAATGTCGATTACAGTCTACAAGACCCAACCCTTGTAACTTAT
453 CGAATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGT
* * *
21892829 TTTTCTCTCCGGTAACCGAAAATCCAAAATCAAATTTTGTATTTCAGTTTTCTGACTAGACTAAC
518 TTTTCTCTCCGGTAACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAAC
* * * * *
21892894 CACGACTATCACCGTTAGAATAAAATAGTTTAAAATCTGTAAAATCTCGACTCGGACAATGTTGT
583 CACGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGT
* * *
21892959 CTCAATGAGAATCGAATTCGATCTAAATTCCTCTTAGCGGACTGCCGCTAAGTGTGTTCAAAGGA
648 CTCAATGAGAATCGAATCCGATCTAAATTCC-CTTAGCGGACCGCCGCTAAGTGTGTTCACAGGA
* * *
21893024 TATCGAATGTGGTACAAGCCGATCTTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACG
712 TGTCGAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACG
21893089 GGCCCTTTTTGAACTT
777 GGCCCTTTTTGAACTT
*
21893105 GAAAGTGTAAGGATTTTAAAAAGAATGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
* * *
21893170 ATATCCGAAGATATAAGGTGCTTTTCAATTCTAACGATAGGAATTGAGTCATTGCTTTAGCCTTC
66 ATATCCGAAGATATAAGGTGCTTTTCAATTCTCACGATCGGAATTGAGTCGTTGCTTTAGCCTTC
* * * *
21893235 GGCTAATTTTGGTGCCAATTTGACAAGCATCGTATGCTGTCTAAATAATTATCCTTAATGTCAAA
131 GGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAAA
* * *
21893300 AGAAAGAATTAAATAGCGTAGTAAAGAGAAGAAAGGTCGATCCACATGGACTTAGGAAATTCTGA
196 AGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTGA
* * * * *
21893365 TGTAGAAGGCTTCTAGTTCTTGATTTAGGCG-AATGGGATAAAAATGTGAGGTTTTGATCAAAAA
261 TGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGGTTTTGATCGAAAG
* *
21893429 AGTTTAATTAAAGTAAAATAAAAAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTTA
326 AGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTTA
* * * *
21893494 AGAAGAGACTCAGTTTAAGTATCAGCCTTAGGCTTCGATTTGACTCATTTCCAACCGATAATCGA
391 AGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATCGA
* * * *
21893559 ATAAGACTTTACTCCAGATAAATGTCGGTTACAGTCTACAAGACCCAACCATTGTAACTTGTTTT
456 ATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTTT
* * * * * *
21893624 TCTCTTCGGTAACCGAAAATGCAAAATCAATATTTGAATTTCACTGTTCTGACTAGACTAACCAC
521 TCTCTCCGGTAACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAACCAC
* * * * *
21893689 GACTATCGCCGTTAGAATAAAAGAGTTGAAAATCTGAAAAATTCCGACTCGGACTATATTGTCTC
586 GACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGTCTC
* ** * *
21893754 ATTGAGAATCGAATCCGATCTAAATTTCCCTTAATGGACCGCTGTTAAGTGTGTTCACAGGATGT
651 AATGAGAATCGAATCCGATCTAAA-TTCCCTTAGCGGACCGCCGCTAAGTGTGTTCACAGGATGT
** * * *
21893819 CGAATGTGCTACAAGCCGATCCTTCCTATCAACTATAAATCGAAATAACCTTCAAATCAACGGTC
715 CGAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACGGGC
21893884 CCTTTTTGAACTT
780 CCTTTTTGAACTT
* * *
21893897 GAAAGTGTAAGGATTTTAGAAAGAAAGACCGATTGCCAATCCCAGTTTGCAAAAAATTGAGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
* * *
21893962 ATATCCAAAGATATAAGCTGCTTTTCAATTCTCACGATCGGAATTGAGTCGTTGATTTAGCCTTC
66 ATATCCGAAGATATAAGGTGCTTTTCAATTCTCACGATCGGAATTGAGTCGTTGCTTTAGCCTTC
* * * * *
21894027 GGCTAATTTTGGTGCCAATTTGACAAGCGTTGTATACTATCAAAATAATTATCTTTAATCTCAAA
131 GGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAAA
* * *
21894092 AGAAATAATTAAATAGCATAGT-AA-A-AAGAAGGGTCGATCCACATGGACTTAAGAAATTCTGA
196 AGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTGA
* *
21894154 TGTAGAAGGCTTTTAGCTCTTGATTTAGGCGAAATAGGATAAAAATGAGGGGTTTTGATCGAAAG
261 TGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGGTTTTGATCGAAAG
* * * *
21894219 AATTTAGTTAAAGTAAAATGAAGAAATGAGAATTTAAATCTAAGAATTTAAGGAAAGTAAATTTA
326 AGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTTA
* * * * * * * *
21894284 AGAAGAGACCCAGTTTAAGTATTAGCTTTAGGCTTCGATTTGACTCATTTCCACCCGATAATCGA
391 AGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATCGA
* * * ** *
21894349 ATAAGACTTTACTCTGAATAAATGCTAGTTACAGTCTACAAGACCTAACCCTTGTAACTT-TTTT
456 ATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTTT
* * * * * * *
21894413 TCTCTCCGGTAATCGAAATTGCAAAATTAATTTTTGAAGTTCAATGTTCTGGCTAGACTAACCAC
521 TCTCTCCGGTAACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAACCAC
* * * *
21894478 GATTATCGCCGTTAGAATAAAATAGTTTAAAATCTGAAAAATCCCGACTCGGACTATATTGTCTC
586 GACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGTCTC
* * *** *
21894543 AATGAGAATCGAATCCGATCTAAATTTTCCTTAGCAGATAACCGTTAAGTGTGTTCACAGGATGT
651 AATGAGAATCGAATCCGATCTAAA-TTCCCTTAGCGGACCGCCGCTAAGTGTGTTCACAGGATGT
* * ** *
21894608 CGAATGTGTTACAAAG-CGGTCCTTCCTATCAACTATAAATCGAAACAACCTTCAAACCAACAGG
715 CGAATGTGCTAC-AAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACGGG
21894672 CCCTTTTTGAACTT
779 CCCTTTTTGAACTT
* * * *
21894686 GAAAGTGTAAGGATTTTAGAAAGAAAGACCGATTGCCAATTCC-TGTTTGCAAAAAACTGAGAAA
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAA-TCCAAGTTTGCAAAAAATTGAGAAA
* * *
21894750 TATATCTGAAGATATAAGCTACTTTTCAATTCTCACGATCGGAATTGAGTCGTTGCTTTAGCCTT
65 TATATCCGAAGATATAAGGTGCTTTTCAATTCTCACGATCGGAATTGAGTCGTTGCTTTAGCCTT
* * * * * *
21894815 CGGATAATTTTGGCGCCAATTTGACAAGCGTCGTGTACTATCAAAATAATTATCTTTAATCTCGA
130 CGGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAA
* * **
21894880 AAGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTTGATCCACATGGACTTAAAAAATTCTG
195 AAGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTG
* *
21894945 ATGTAGAAGGCTTTTAGTTCTTGATTTAGGTGAAATCGGATAAAAATG-GGAGGTTTTGATCGAA
260 ATGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGG-GGTTTTGATCGAA
* *
21895009 ATAGTTTAATTAAAGTAAAATGAAGTAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATT
324 AGAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATT
* * *
21895074 TAAGAAGAAACTCAGTTTAAGAATCAAG-CTCAGGCTTCGCTTTAACTCATTTCCAGCCGATCAT
389 TAAGAAGAAACTCAGTTTAAGTATC-AGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCAT
* * *
21895138 CGAATAAG-TGTTTACTCCCGATAAATGCCGGTTACAATCTACAAGACCTAACCCTTGTAACTTG
453 CGAATAAGAT-TTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTG
* * * * * * *
21895202 TTCTTCTATCCGATAAACCAAAAATCTAAAATCAATTTTTGAAGTTCAATTTTCTGGCTAGACTA
517 TTTTTCTCTCCGGT-AACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTA
* * * * *
21895267 ACCACGACTATCACTGTTAGAATAAAACAGTTTAAAATCTAGAAAAACCCGACTCAGACTATGTT
581 ACCACGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTT
* * *
21895332 GTCTCAATGAGAATCGAATTCGATCTCAATTTCCCTTAGCGGACCGCCGCTAAGTGTGTTCATAG
646 GTCTCAATGAGAATCGAATCCGATCT-AAATTCCCTTAGCGGACCGCCGCTAAGTGTGTTCACAG
* * * *
21895397 GAAGTCGAATGTGCTACAAGCCGATCCTTCTTCTCGACTATAAATCGAAACAACCTTCAAACCAA
710 GATGTCGAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAA
* *
21895462 CGGGCTCTTTTTGAATTT
775 CGGGCCCTTTTTGAACTT
* * * * * * *
21895480 GAAAGTGTAACGATTTTAAAAAGAGAGCCCTATTGCCAATCCAAATTTTCAGAAAATTGAGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
21895545 ATATCCGAAGATATAAGGTGCTTTTCAATTCTTCACGATCGGAATTGAGTCGTTGCTTTAGCCTT
66 ATATCCGAAGATATAAGGTGCTTTTCAATTC-TCACGATCGGAATTGAGTCGTTGCTTTAGCCTT
* * * *
21895610 CGGTTAATTTTGGTGCCAATTTGACAAGTGTCGTATACTGTCTAAATAATTATCCTTAATGTCAA
130 CGGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAA
* * * *
21895675 AAGAAATAATTAAATAGCTTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTTGAAAATTCTA
195 AAGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTG
* *
21895740 ATGTAAAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATAAGGGGTTTTGATCGAAA
260 ATGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGGTTTTGATCGAAA
*
21895805 GAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTCAATCTAAGAATTTAACGAAAGTAAATTT
325 GAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTT
* *
21895870 AAGAAGAAACTCAGTTTAAGTATCAGCCTCAAGCTTCGCTTTGACTCATTTTCAACCGATCATCG
390 AAGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATCG
* * * *
21895935 AATAATATTTTACTTCGGATAACTGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTATTT
455 AATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTT
* * * *
21896000 TTCTCTTCAGTAACTGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTAGCTAGACTAACCA
520 TTCTCTCCGGTAACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAACCA
* * * * * * *
21896065 CGACCATCACCATTAGAATAAAATAGTTTAAAATCTGAAAAATCTCGACTCGGACAATGTTGTCT
585 CGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGTCT
* * ** * * * *
21896130 CTATGAGAATCGAATCCAATCTAAATTCCTCTTAGCGGACCATCACTAAGTATATTCACAGGAAG
650 CAATGAGAATCGAATCCGATCTAAATTCC-CTTAGCGGACCGCCGCTAAGTGTGTTCACAGGATG
* * * *
21896195 TCGAATGTGCTACAAACCGATCCTTCCTCCCGACTATGAATCAAAACAACCTTCAAACCAACGGG
714 TCGAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACGGG
21896260 CCCTTTTTGAACTT
779 CCCTTTTTGAACTT
* * *
21896274 GAAAGTATAACGATTTTAAAAGGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
*
21896339 ATATCCGAAGATATAAGATGCTTTTCAATTCCTCACGATCGGAATTGAGTCGTTGCTTTAGCCTT
66 ATATCCGAAGATATAAGGTGCTTTTCAATT-CTCACGATCGGAATTGAGTCGTTGCTTTAGCCTT
** * * *
21896404 CGATTAATTTTGGCGCCAATTTGACAAGCATCGTACACTGTCTAAATAATTATCCTTTATCTCAA
130 CGGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAA
* * * *
21896469 AAGAAATAATTAAAAAGTGTAGTAAAGAGAAGAAGGGTCGATCCATAGGGACTTAGGAAATTTTG
195 AAGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTG
* * * * * *
21896534 GTGTAGAAGGCTTCTAGTTTTTGATTTAGGCAAAATGGGATGAAAATGGGGGGTTTTGATCGAAA
260 ATGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGGTTTTGATCGAAA
* * *
21896599 GAGTTTAATTAAAGTAAAATGAAGAAATGAGAATTTAAATCTAAGAACTGAACGAAAGTAAATTT
325 GAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTT
* * * ** * *
21896664 AAGAAGATACTCAATTTAAGTATCAGCCTTAGGCTTCAATTTGACTCATTTTCAGCCGATCATCG
390 AAGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATCG
* * * *
21896729 AATAGGATTTTACTCCGG-TTAATGTCAGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTT
455 AATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTT
* * **
21896793 TTCTCTCTGGTAACCGAAAATGCAAAATCAATTTTTGAATTTCAGCATTCTGGCTAGACTAACCA
520 TTCTCTCCGGTAACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAACCA
21896858 CGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGTCT
585 CGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGTCT
* * * * * **
21896923 TAATGAGAATCAAATCTGATCCAAATTCCTCTTAGTGGATTGCCGCTAAGTGTGTTCACAGGATG
650 CAATGAGAATCGAATCCGATCTAAATTCC-CTTAGCGGACCGCCGCTAAGTGTGTTCACAGGATG
* *
21896988 TCGAATGTGCTACAAGCCGATCTTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACAGG
714 TCGAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACGGG
21897053 CCCTTTTTGAACTT
779 CCCTTTTTGAACTT
* * *
21897067 GAAAGTGTAAGGATTTTGAAAAGAAAGGTCGATTAG-CAATCCAAGTTTGCAAAAAATGGAGAAA
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATT-GCCAATCCAAGTTTGCAAAAAATTGAGAAA
* * *
21897131 TATATCCGAAGATATAAGATGCTTTTCAATTCCTCACGATCGGAATTGAGTCCTTACTTTAGCCT
65 TATATCCGAAGATATAAGGTGCTTTTCAATT-CTCACGATCGGAATTGAGTCGTTGCTTTAGCCT
* *
21897196 TCGGCTAATTTTGGCGCTAATTTGACAAGCGTCGTATATTGTCTAAATAATTATCCTTAATCTCA
129 TCGGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCA
* * * *
21897261 AAAGAAATAATTAAATAGCATAGTAAAGAGAAGAAGGGTCGATCTACATGGACTTAGAAAATTCT
194 AAAGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCT
* * * * * * *
21897326 AATGTAGAAGACTCTTAGTTCTTGATTTAGGTGAAATGAGAAAAAAATGAGAGGTTTTGATCGAA
259 GATGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGGTTTTGATCGAA
21897391 AGAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATT
324 AGAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATT
* * *
21897456 TAACAAGAAACTCAGTTTAAGTATTAGCATCAGGCTTCGCTTTGACTCATTTCCAACCGATCATC
389 TAAGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATC
** * *
21897521 GAATAAGATTTTACTAAGGATAAATGCCAGTTACAGTCTACAAGACCCAACCCTTGTAACTTTTT
454 GAATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTT
* * *
21897586 TTTCTCTCCGGTAAACCGAAAATGCAAAATTAATTTTTGAATTTCAGTTTTTTGGCTAGACTAAC
519 TTTCTCTCCGGT-AACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAAC
* * * * * *
21897651 CACAACTATCGCCGTTAGAATAAAATAGTTTAAAATCTGGAAAAACCAGACTAGAACTATGTTGT
583 CACGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGT
* * ** * *
21897716 CTCAATGAGAATCGAATCTGATCTCAATTTCCCTTAGCGGACTACCGTTAAGCGTGTTCACAGGA
648 CTCAATGAGAATCGAATCCGATCT-AAATTCCCTTAGCGGACCGCCGCTAAGTGTGTTCACAGGA
* * *
21897781 TATCGAATGTGCTACAAGCCGATCTTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACA
712 TGTCGAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACG
21897846 GGCCCTTTTTGAACTT
777 GGCCCTTTTTGAACTT
* * * *
21897862 GAAAGCGTAAGGATTTTAAAAAGAAAGGTCGATTGCCAATCCATGTTTGCAGAAAATTGAGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
* *
21897927 ATATCCGAAGATATAAGGTGCTTTTCAATTCTCACAATC-GAAGTTGAGTCGTTGCTTTATCCTT
66 ATATCCGAAGATATAAGGTGCTTTTCAATTCTCACGATCGGAA-TTGAGTCGTTGCTTTAGCCTT
* * * * *
21897991 CGGCTAATTTTGGCGCCAATTTGATAAGCGTCGTACACTGTCAAAATAATTATCCTTAATTTTAA
130 CGGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAA
* * *
21898056 AAGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAAGGACTTAGAAAATTTTG
195 AAGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTG
* * * * *
21898121 AAGTAGAAGGCTTTTATTTCTTGATTTTGGCGAAATGGGATAAAAATTGA-GGATTTTGATTGAA
260 ATGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAA-TGAGGGGTTTTGATCGAA
* *
21898185 AGAGTTTAATTAAAGTAAAATGGA-AAATGGGAATTTAAATATAAGAATTTAACGAAAGTAAATT
324 AGAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATT
* * * * * *
21898249 TAAGAAGAGACTCAGTTTAAGTATCAGTCTCAGGCTTCACATTGACTCATTTCTAACCAATCATC
389 TAAGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATC
* * *
21898314 GAATAAGATTTTACTTCGGATAAATACCGGTTACAGTCTACAAGATCCAACCCTTGTAACTTGTT
454 GAATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTT
* * * * * *
21898379 TTTCTCTCCGGTAAGCCAAAAATGCAATATTATTTTTTAAATTTCAGTTTTCTGGCTAGACTAAC
519 TTTCTCTCCGGTAA-CCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAAC
* * * * *
21898444 CACGACTATTGTCGTTAGAATAAAACAGTTTAAAATCTGAAAAAACCAGACTCGGACTATGTTGT
583 CACGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGT
* * *
21898509 CTCAATGAGAATCGAATTCGATCTAAATTTCCCTTAACGAACCGTCC-CTAAGTGTGTTCACAGG
648 CTCAATGAGAATCGAATCCGATCTAAA-TTCCCTTAGCGGACCG-CCGCTAAGTGTGTTCACAGG
* * *
21898573 ATGTCGAATGTGCTACAAGCCAATCCTTCCTCCCAATTATAAATCGAAACAATCTTCAAACCAAC
711 ATGTCGAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAAC
21898638 GGGCCCTTTTTGAACTT
776 GGGCCCTTTTTGAACTT
* * * *
21898655 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCTAATTTTACAGAAAATTGAGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
* *
21898720 ATATCCGAAGATATAAGGTGCTTTTCAATTCTCACGATCGGAATTGAGTCGTTGCTTTAACCTTT
66 ATATCCGAAGATATAAGGTGCTTTTCAATTCTCACGATCGGAATTGAGTCGTTGCTTTAGCCTTC
* *
21898785 GGTTAATTTTGGCGTCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAAA
131 GGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAAA
* * * *
21898850 AGAAATAATTAAATGGCATAGTAAAGTGAAGAAGGGTCGATCCACAGGGACTTAAGAAATTCTGA
196 AGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTGA
* * *
21898915 TGTAGAAGGCTTTTAGTTCTTGATTTAGGTGAAATGGAATAAAAATGAGGGGTTTTGATCAAAAG
261 TGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGGTTTTGATCGAAAG
* * * *
21898980 AGTTTAATCAAACTAAAATGAAGAAATGAGAATTTAAATCTAAGAATTTAATGAAAGTAAATTTA
326 AGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTTA
* * *
21899045 ATAAGAAACTCAGTTTAAG--T-AG-CTCAGGCTTCGCTTTAACTCACTTCCAACCGATCATCGA
391 AGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATCGA
* * * ** *
21899106 ATAAGAGTTTACTTCGGATAAATGCTGGTTACAGTCTACAAGGTCCAACCCTTGTAACTTGTTCT
456 ATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTTT
* * * * *
21899171 TCTATTCAGTAAATCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGAGTAACCA
521 TCTCTCCGGT-AACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAACCA
* * *
21899236 CGACTATCGCCGTTAGAATAAAACAATTTAAAATCTGGAAAAACCC-ACTCGAACTATGTTGTCT
585 CGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGTCT
* * * * * * * * * *
21899300 TAATGAGAATCGAATCCAATCTCAATTTTCCTTAGCGAATCGTCGCTAATTGTATTCACAGGAAG
650 CAATGAGAATCGAATCCGATCT-AAATTCCCTTAGCGGACCGCCGCTAAGTGTGTTCACAGGATG
* ** *
21899365 TTGAATGTGCTACAAGCTAATCCTTCCTCCCCACTATAAATCGAAACAACCTTCAAACCAACGGG
714 TCGAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACGGG
21899430 CCCTTTTTGAACTT
779 CCCTTTTTGAACTT
* * *
21899444 GAAAGTGTAAGGATTTTAAAAGGAAAGGCCGATTGTCAATCCAAGTTTGCAAAATATTGAGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
*
21899509 ATATCCGAAGATATAAGGTGCTTTTCAATTCCTCACGATCGGAATTGAGTCGTCGCTTTAGCCTT
66 ATATCCGAAGATATAAGGTGCTTTTCAATT-CTCACGATCGGAATTGAGTCGTTGCTTTAGCCTT
* * * * * * *
21899574 -GGCTAATTTTGGCACAAATTTGACGAGCATTGTATTCTGTCTAAATAATTATCCTTAATGTCAA
130 CGGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAA
* * ** * *
21899638 AAGAAATAATTAAATAACGTAGTAAAGAGAAGGAGGGTCGATCCTTAGAGACTTAGGAAATTCTA
195 AAGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTG
* * * *
21899703 ACGTAAAAGGCTTTTAGTTCTTGATTTAGGTGAAATGGGATAAAAACG-GGGGCTTTTGATCGAA
260 ATGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGG-TTTTGATCGAA
*
21899767 AGAGTTTAATTAAAGTAAAATGAAGAAATGGGATTTTAAATCTAAGAATTTAACGAAAGTAAATT
324 AGAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATT
*
21899832 TAAGAAGAAACTCAGTTTAAGTATCAGCCTCAAGCTTCGCTTTGACTCATTTCCAACCGATCATC
389 TAAGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATC
* * * * * *
21899897 GAATAAGATTTTACTACGGATAAATGCCAGTTATAGTCTATAGGACCCAACCCTTGTAACTTATT
454 GAATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTT
*
21899962 TTTCTCTCCGGTAACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGTTAGACTAACC
519 TTTCTCTCCGGTAACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAACC
* * * * *
21900027 CCGACTATCACTGTTAGAATAAAACAGTTTAAAATTTGG-AAATCCCGACTCGGACTATGTTATC
584 ACGACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGTC
21900091 TCAATGAGAATCGAATCCGATCTAAATTCCTCTTAGCGGACCGCCGCTAAGTGTGTTCACAGGAT
649 TCAATGAGAATCGAATCCGATCTAAATTCC-CTTAGCGGACCGCCGCTAAGTGTGTTCACAGGAT
* * *
21900156 GTCGAATGTGTTACAAGCCGAT-CTTTCTGCCTAACTATAAATCGAAACAACCTTCAAACCAACG
713 GTCGAATGTGCTACAAGCCGATCCTTCCT-CCCAACTATAAATCGAAACAACCTTCAAACCAACG
21900220 GGCCCTTTTTGAACTT
777 GGCCCTTTTTGAACTT
21900236 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
1 GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
* *
21900301 ATATCCGAAGATATAAGGTGCTTTTCAATTCCTCACGATCGGAATTGAGTCCTTACTTTAGCCTT
66 ATATCCGAAGATATAAGGTGCTTTTCAATT-CTCACGATCGGAATTGAGTCGTTGCTTTAGCCTT
* * ** *
21900366 CGGCTAATTTTGGCGCCAATTTGACAAGCGTTGTATATTGTCTAAATAATTATATTTAATGTCAA
130 CGGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAA
* * *
21900431 AAGAAATAATTAAATAGCTTAGTAAAGAGAAGAAGGGTCGATCCACAAGGACTTAGGAAATTTTG
195 AAGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTG
* *
21900496 ATGTAGAAGGCTTCTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGGGGGGTTTTGATCGAAA
260 ATGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGGTTTTGATCGAAA
*
21900561 GAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTATGAATTTAACGAAAGTAAATTT
325 GAGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTT
* *
21900626 AAGAAGAAACTCAGTTTAAGTATCAGCATCAAGCTTCGCTTTGACTCATTTCCAACCGATCATCG
390 AAGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATCG
* * *
21900691 AATAAGATTTTACTCCGAATTAATGTCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTT
455 AATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTT
*
21900756 TTCTCTCCGATAAACCGAAAATCCAAAATCAATTTT
520 TTCTCTCCGGT-AACCGAAAATCCAAAATCAATTTT
21900792 GGATTAATTC
Statistics
Matches: 9020, Mismatches: 977, Indels: 133
0.89 0.10 0.01
Matches are distributed among these distances:
785 197 0.02
786 389 0.04
787 3 0.00
788 8 0.00
789 985 0.11
790 429 0.05
791 35 0.00
792 1247 0.14
793 2774 0.31
794 2215 0.25
795 729 0.08
796 9 0.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (792 bp):
GAAAGTGTAAGGATTTTAAAAAGAAAGGCCGATTGCCAATCCAAGTTTGCAAAAAATTGAGAAAT
ATATCCGAAGATATAAGGTGCTTTTCAATTCTCACGATCGGAATTGAGTCGTTGCTTTAGCCTTC
GGCTAATTTTGGCGCCAATTTGACAAGCGTCGTATACTGTCTAAATAATTATCCTTAATCTCAAA
AGAAATAATTAAATAGCGTAGTAAAGAGAAGAAGGGTCGATCCACAGGGACTTAGGAAATTCTGA
TGTAGAAGGCTTTTAGTTCTTGATTTAGGCGAAATGGGATAAAAATGAGGGGTTTTGATCGAAAG
AGTTTAATTAAAGTAAAATGAAGAAATGGGAATTTAAATCTAAGAATTTAACGAAAGTAAATTTA
AGAAGAAACTCAGTTTAAGTATCAGCCTCAGGCTTCGCTTTGACTCATTTCCAACCGATCATCGA
ATAAGATTTTACTCCGGATAAATGCCGGTTACAGTCTACAAGACCCAACCCTTGTAACTTGTTTT
TCTCTCCGGTAACCGAAAATCCAAAATCAATTTTTGAATTTCAGTTTTCTGGCTAGACTAACCAC
GACTATCGCCGTTAGAATAAAACAGTTTAAAATCTGGAAAATCCCGACTCGGACTATGTTGTCTC
AATGAGAATCGAATCCGATCTAAATTCCCTTAGCGGACCGCCGCTAAGTGTGTTCACAGGATGTC
GAATGTGCTACAAGCCGATCCTTCCTCCCAACTATAAATCGAAACAACCTTCAAACCAACGGGCC
CTTTTTGAACTT
Found at i:21901612 original size:10 final size:10
Alignment explanation
Indices: 21901597--21901626 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
21901587 GTCAATAAAA
21901597 AACACATTTT
1 AACACATTTT
21901607 AACACATTTT
1 AACACATTTT
21901617 -ACACATTTT
1 AACACATTTT
21901626 A
1 A
21901627 TTCACTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (10 bp):
AACACATTTT
Found at i:21902548 original size:4 final size:4
Alignment explanation
Indices: 21902539--21902586 Score: 51
Period size: 4 Copynumber: 12.0 Consensus size: 4
21902529 ATAAATCGAG
* * * * *
21902539 TAAA TAAA TAAC TAAA TAAA TGAA TAAA TGAA GAAA TAAA CAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
21902587 ATAATATACA
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (4 bp):
TAAA
Found at i:21903853 original size:11 final size:11
Alignment explanation
Indices: 21903839--21903875 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
21903829 TTTGTTTAAT
21903839 TTTATTATTTA
1 TTTATTATTTA
21903850 TTTATTATTTA
1 TTTATTATTTA
*
21903861 TTT-GTATTTA
1 TTTATTATTTA
21903871 TTTAT
1 TTTAT
21903876 ATAAATAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:21903891 original size:4 final size:4
Alignment explanation
Indices: 21903876--21903916 Score: 57
Period size: 4 Copynumber: 10.2 Consensus size: 4
21903866 ATTTATTTAT
*
21903876 ATAA ATAG ATAA ATAA ATAA A-AA ATAAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA AT-AA ATAA ATAA ATAA A
21903917 ATTAAAATAG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 3 0.09
4 26 0.79
5 4 0.12
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (4 bp):
ATAA
Found at i:21907421 original size:13 final size:13
Alignment explanation
Indices: 21907403--21907427 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21907393 TTTAATTTTT
21907403 CTTAGTTAAATTA
1 CTTAGTTAAATTA
21907416 CTTAGTTAAATT
1 CTTAGTTAAATT
21907428 TTAGTTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (13 bp):
CTTAGTTAAATTA
Found at i:21920968 original size:29 final size:29
Alignment explanation
Indices: 21920925--21921251 Score: 230
Period size: 29 Copynumber: 11.1 Consensus size: 29
21920915 ACCCGAGGGC
21920925 AAAATGGTAATTTTTGGTGAAATCGGGGTCT
1 AAAATGGTAA-TTTTGGTGAAATCGGGGT-T
* * *
21920956 AAAATGG-AATTTTAG-AAAATTTGAGAGG-T
1 AAAATGGTAATTTTGGTGAAA-TCG-G-GGTT
*
21920985 AAAATGGTAATTTTGGTGAAATTGGGGTT
1 AAAATGGTAATTTTGGTGAAATCGGGGTT
* **
21921014 AAAAATGG-AATTTTGGAGAGTTCGGGG-T
1 -AAAATGGTAATTTTGGTGAAATCGGGGTT
** *
21921042 AAAATGGTAATTTTGGTGAAATCAAGATT
1 AAAATGGTAATTTTGGTGAAATCGGGGTT
* **
21921071 AAAAATGG-AATTTTGGAGAGTTCGAGGG-T
1 -AAAATGGTAATTTTGGTGAAATCG-GGGTT
*
21921100 AAAATGGTAATTTTTGGTGAAATCAGGGTT
1 AAAATGGTAA-TTTTGGTGAAATCGGGGTT
*
21921130 AAAAATGG-AATTTT-G-GAAAGTTCGGGGGT
1 -AAAATGGTAATTTTGGTGAAA--TCGGGGTT
**
21921159 AAAATGGTAATTTTTGGTGAAATTAGGGTT
1 AAAATGGTAA-TTTTGGTGAAATCGGGGTT
* * *
21921189 AAAAATAG-AATTTT-G-GAAAGTTTGGGGGT
1 -AAAATGGTAATTTTGGTGAAA--TCGGGGTT
21921218 AAAATGGTAATTTTTGGTGAAATCGGGGTT
1 AAAATGGTAA-TTTTGGTGAAATCGGGGTT
21921248 AAAA
1 AAAA
21921252 ATAGAATTTT
Statistics
Matches: 232, Mismatches: 36, Indels: 57
0.71 0.11 0.18
Matches are distributed among these distances:
27 15 0.06
28 41 0.18
29 75 0.32
30 66 0.28
31 27 0.12
32 8 0.03
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.33
Consensus pattern (29 bp):
AAAATGGTAATTTTGGTGAAATCGGGGTT
Found at i:21920999 original size:59 final size:59
Alignment explanation
Indices: 21920925--21921319 Score: 516
Period size: 59 Copynumber: 6.7 Consensus size: 59
21920915 ACCCGAGGGC
* * * *
21920925 AAAATGGTAATTTTTGGTGAAATCGGGGTCT-AAAATGGAATTTTAGAAAATTTGAGAGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGT-TAAAAATGGAATTTTGGAAAGTTCG-GGGGT
* *
21920985 AAAATGGTAA-TTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAGAGTTC-GGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
** * * *
21921042 AAAATGGTAA-TTTTGGTGAAATCAAGATTAAAAATGGAATTTTGGAGAGTTCGAGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
*
21921100 AAAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
** * *
21921159 AAAATGGTAATTTTTGGTGAAATTAGGGTTAAAAATAGAATTTTGGAAAGTTTGGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
* *
21921218 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTGGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
* * *
21921277 AAAATGGTTA-TTTT-G-GAAGTTTCGGGGTCAAAAATGGAATTTT
1 AAAATGGTAATTTTTGGTGAA--ATCGGGGTTAAAAATGGAATTTT
21921320 TTGAAATTTT
Statistics
Matches: 306, Mismatches: 24, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
56 3 0.01
57 53 0.17
58 39 0.13
59 201 0.66
60 10 0.03
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.34
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
Found at i:21921274 original size:29 final size:29
Alignment explanation
Indices: 21920956--21921319 Score: 183
Period size: 29 Copynumber: 12.4 Consensus size: 29
21920946 ATCGGGGTCT
* *
21920956 AAAATGGAATTTTAGAAAATTTGAGAGG-T-
1 AAAATGGAATTTTGGAAAGTTTG-G-GGTTA
21920985 AAAATGGTAATTTTGGTGAAA--TTGGGGTTA
1 AAAATGG-AATTTT-G-GAAAGTTTGGGGTTA
* *
21921015 AAAATGGAATTTTGGAGAGTTCGGGG-T-
1 AAAATGGAATTTTGGAAAGTTTGGGGTTA
*** *
21921042 AAAATGGTAATTTTGGTGAAA--TCAAGATTA
1 AAAATGG-AATTTT-G-GAAAGTTTGGGGTTA
* *
21921072 AAAATGGAATTTTGGAGAGTTCGAGGG-T-
1 AAAATGGAATTTTGGAAAGTTTG-GGGTTA
**
21921100 AAAATGGTAATTTTTGGTGAAA--TCAGGGTTA
1 AAAATGG-AA-TTTT-G-GAAAGTTTGGGGTTA
* *
21921131 AAAATGGAATTTTGGAAAGTTCGGGGGT-
1 AAAATGGAATTTTGGAAAGTTTGGGGTTA
*
21921159 AAAATGGTAATTTTTGGTGAAA--TTAGGGTTA
1 AAAATGG-AA-TTTT-G-GAAAGTTTGGGGTTA
* *
21921190 AAAATAGAATTTTGGAAAGTTTGGGGGT-
1 AAAATGGAATTTTGGAAAGTTTGGGGTTA
*
21921218 AAAATGGTAATTTTTGGTGAAA--TCGGGGTTA
1 AAAATGG-AA-TTTT-G-GAAAGTTTGGGGTTA
* *
21921249 AAAATAGAATTTTGGAAAGTTTGGGGGT-
1 AAAATGGAATTTTGGAAAGTTTGGGGTTA
* *
21921277 AAAATGGTTATTTTGG-AAGTTTCGGGGTCA
1 AAAATGG-AATTTTGGAAAGTTT-GGGGTTA
21921307 AAAATGGAATTTT
1 AAAATGGAATTTT
21921320 TTGAAATTTT
Statistics
Matches: 263, Mismatches: 32, Indels: 80
0.70 0.09 0.21
Matches are distributed among these distances:
27 25 0.10
28 49 0.19
29 86 0.33
30 66 0.25
31 22 0.08
32 15 0.06
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.34
Consensus pattern (29 bp):
AAAATGGAATTTTGGAAAGTTTGGGGTTA
Found at i:21922995 original size:6 final size:6
Alignment explanation
Indices: 21922986--21923062 Score: 52
Period size: 6 Copynumber: 12.8 Consensus size: 6
21922976 TTGAATTTGA
* * *
21922986 TTAAAT TTAAAT CTAAA- ATAAAT TTAAAT AAGTAAAT TTAAAT TTAAA-
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT --TTAAAT TTAAAT TTAAAT
** *
21923034 ACAAAT TTAAAA TT-AAT TTAAACT TTAAA
1 TTAAAT TTAAAT TTAAAT TTAAA-T TTAAA
21923063 AGCCCAAGCC
Statistics
Matches: 54, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
5 11 0.20
6 32 0.59
7 6 0.11
8 5 0.09
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (6 bp):
TTAAAT
Found at i:21923007 original size:17 final size:16
Alignment explanation
Indices: 21922987--21923049 Score: 67
Period size: 17 Copynumber: 3.9 Consensus size: 16
21922977 TGAATTTGAT
21922987 TAAATTTAAATCTAAAA
1 TAAATTTAAAT-TAAAA
*
21923004 TAAATTTAAA-T-AAG
1 TAAATTTAAATTAAAA
21923018 TAAATTTAAATTTAAAA
1 TAAATTTAAA-TTAAAA
*
21923035 CAAATTTAAAATTAA
1 TAAATTT-AAATTAA
21923050 TTTAAACTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 12 0.31
15 1 0.03
16 1 0.03
17 22 0.56
18 3 0.08
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.37
Consensus pattern (16 bp):
TAAATTTAAATTAAAA
Found at i:21923013 original size:11 final size:11
Alignment explanation
Indices: 21922993--21923055 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
21922983 TGATTAAATT
*
21922993 TAAATCTAAAA
1 TAAATTTAAAA
21923004 TAAATTT-AAA
1 TAAATTTAAAA
* *
21923014 T-AA-GTAAATT
1 TAAATTTAAA-A
21923024 TAAATTTAAAA
1 TAAATTTAAAA
*
21923035 CAAATTTAAAA
1 TAAATTTAAAA
*
21923046 TTAATTTAAA
1 TAAATTTAAA
21923056 CTTTAAAAGC
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
8 1 0.03
9 4 0.10
10 5 0.12
11 26 0.65
12 4 0.10
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.37
Consensus pattern (11 bp):
TAAATTTAAAA
Found at i:21924548 original size:50 final size:51
Alignment explanation
Indices: 21924406--21924541 Score: 168
Period size: 53 Copynumber: 2.6 Consensus size: 51
21924396 TACTTCTGTA
* *
21924406 GCTTCAATTTGCCCCTCTATAGCTTTAGGTGTATGAGATTTTCCATTGCGGCG
1 GCTTCAATTTGCACCTCTACAGCTTTAGGTGTATGAGATTTTCCATT--GGCG
* * * *
21924459 GCTTCAATCTGCACCTCTACAACTTTACGTGCATGAGATTTGT-CATT-GCG
1 GCTTCAATTTGCACCTCTACAGCTTTAGGTGTATGAGATTT-TCCATTGGCG
*
21924509 GCTTCAATTTGCACCTCTACAGCCTTAGGTGTA
1 GCTTCAATTTGCACCTCTACAGCTTTAGGTGTA
21924542 AAAGATTGAA
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
50 31 0.44
53 39 0.55
54 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (51 bp):
GCTTCAATTTGCACCTCTACAGCTTTAGGTGTATGAGATTTTCCATTGGCG
Found at i:21936071 original size:30 final size:29
Alignment explanation
Indices: 21936037--21936221 Score: 135
Period size: 30 Copynumber: 6.2 Consensus size: 29
21936027 TTAAAACCGA
21936037 GTCAAATTCAAATTTTTGAAAACTTTAGGG
1 GTCAAATTCAAATTTTTGAAAA-TTTAGGG
* *
21936067 GTCAAA-TCAAAATTTTTGGAATATTTAAGG
1 GTCAAATTC-AAATTTTT-GAAAATTTAGGG
** *
21936097 GTCAAATTGGAATTTTTGGAAAA-TT-GAG
1 GTCAAATTCAAATTTTT-GAAAATTTAGGG
* * *
21936125 GTCAAATTCGAATTTCTAGAAAGTTTAGGG
1 GTCAAATTCAAATTT-TTGAAAATTTAGGG
* * * *
21936155 GTCAAATTTAATTTTTTTGGAAAGTTTAAGG
1 GTCAAATTCAA-ATTTTT-GAAAATTTAGGG
* *
21936186 GTCAAAATT-GAATTTTTGAAAAATTTGGGG
1 GTC-AAATTCAAATTTTTG-AAAATTTAGGG
21936216 GTCAAA
1 GTCAAA
21936222 AAACAATTTT
Statistics
Matches: 124, Mismatches: 21, Indels: 21
0.75 0.13 0.13
Matches are distributed among these distances:
28 19 0.15
29 11 0.09
30 66 0.53
31 23 0.19
32 5 0.04
ACGTcount: A:0.36, C:0.06, G:0.21, T:0.37
Consensus pattern (29 bp):
GTCAAATTCAAATTTTTGAAAATTTAGGG
Found at i:21936181 original size:31 final size:32
Alignment explanation
Indices: 21936079--21936202 Score: 97
Period size: 28 Copynumber: 4.1 Consensus size: 32
21936069 CAAATCAAAA
21936079 TTTTTGGAATA-TTTAAGGGTC-AAATTGGAA--
1 TTTTTGGAA-AGTTTAAGGGTCAAAATT-GAATT
* *
21936109 TTTTTGGAAA-ATTGA-GGTC-AAATTCGAA--
1 TTTTTGGAAAGTTTAAGGGTCAAAATT-GAATT
* * * *
21936137 TTTCTAGAAAGTTTAGGGGTC-AAATTTAATT
1 TTTTTGGAAAGTTTAAGGGTCAAAATTGAATT
21936168 TTTTTGGAAAGTTTAAGGGTCAAAATTGAATT
1 TTTTTGGAAAGTTTAAGGGTCAAAATTGAATT
21936200 TTT
1 TTT
21936203 GAAAAATTTG
Statistics
Matches: 76, Mismatches: 13, Indels: 8
0.78 0.13 0.08
Matches are distributed among these distances:
28 20 0.26
29 8 0.11
30 18 0.24
31 18 0.24
32 12 0.16
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (32 bp):
TTTTTGGAAAGTTTAAGGGTCAAAATTGAATT
Found at i:21936207 original size:88 final size:88
Alignment explanation
Indices: 21936037--21936210 Score: 228
Period size: 89 Copynumber: 2.0 Consensus size: 88
21936027 TTAAAACCGA
*
21936037 GTCAAATTCAAATTTTTGAAAACTTTAGGGGTCAAATCAAAATTTTTGGAATATTTAAGGGTCAA
1 GTCAAATTCAAATTTTAGAAAACTTTAGGGGTCAAATCAAAATTTTTGGAATATTTAAGGGTCAA
21936102 ATTGGAATTTTTGGAAAATTGAG
66 ATTGGAATTTTTGGAAAATTGAG
* * * **
21936125 GTCAAATTCGAATTTCTAG-AAAGTTTAGGGGTCAAATTTAATTTTTTTGGAA-AGTTTAAGGGT
1 GTCAAATTCAAATTT-TAGAAAACTTTAGGGGTCAAA-TCAAAATTTTTGGAATA-TTTAAGGGT
*
21936188 CAAAATT-GAATTTTTGAAAAATT
63 C-AAATTGGAATTTTTGGAAAATT
21936211 TGGGGGTCAA
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
88 31 0.41
89 39 0.52
90 5 0.07
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (88 bp):
GTCAAATTCAAATTTTAGAAAACTTTAGGGGTCAAATCAAAATTTTTGGAATATTTAAGGGTCAA
ATTGGAATTTTTGGAAAATTGAG
Found at i:21937464 original size:8 final size:9
Alignment explanation
Indices: 21937450--21937481 Score: 50
Period size: 8 Copynumber: 3.8 Consensus size: 9
21937440 GATAATAAAG
21937450 TTTATTTTA
1 TTTATTTTA
21937459 -TTATTTTA
1 TTTATTTTA
21937467 TTTA-TTTA
1 TTTATTTTA
21937475 TTTATTT
1 TTTATTT
21937482 ACATTTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTATTTTA
Found at i:21940037 original size:22 final size:21
Alignment explanation
Indices: 21940012--21940052 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
21940002 TACACTCTTT
21940012 AAAAAAGTAAATTATTTTACAG
1 AAAAAA-TAAATTATTTTACAG
*
21940034 AAAAAATAACTTATTTTAC
1 AAAAAATAAATTATTTTAC
21940053 GTTGAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.54, C:0.07, G:0.05, T:0.34
Consensus pattern (21 bp):
AAAAAATAAATTATTTTACAG
Found at i:21940282 original size:26 final size:27
Alignment explanation
Indices: 21940244--21940297 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
21940234 AAAAGAAAAA
* *
21940244 TTTTCATAGA-TTTGAATATTTAATTT
1 TTTTCATACATTTTGAATATCTAATTT
* *
21940270 TTTTTATACATTTTGAGTATCTAATTT
1 TTTTCATACATTTTGAATATCTAATTT
21940297 T
1 T
21940298 GAATAAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.28, C:0.06, G:0.07, T:0.59
Consensus pattern (27 bp):
TTTTCATACATTTTGAATATCTAATTT
Found at i:21940786 original size:16 final size:17
Alignment explanation
Indices: 21940765--21940797 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
21940755 ATGAAAAAGA
*
21940765 TTTATTTTTAA-ATTTT
1 TTTATTTATAATATTTT
21940781 TTTATTTATAATATTTT
1 TTTATTTATAATATTTT
21940798 GCAAAAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTATTTATAATATTTT
Found at i:21951976 original size:11 final size:10
Alignment explanation
Indices: 21951948--21952045 Score: 70
Period size: 11 Copynumber: 9.0 Consensus size: 10
21951938 GTCATTGATT
21951948 GACCGTTGAC
1 GACCGTTGAC
* *
21951958 CAGTCGTTGATC
1 GA-CCGTTGA-C
21951970 GACCGTTGACC
1 GACCGTTGA-C
21951981 GACCGTTGATC
1 GACCGTTGA-C
* *
21951992 TATCGTTGAC
1 GACCGTTGAC
21952002 TGACCGTTGACC
1 -GACCGTTGA-C
**
21952014 GATTGTTGAC
1 GACCGTTGAC
21952024 TGACCGTTGACC
1 -GACCGTTGA-C
21952036 GACCGTTGAC
1 GACCGTTGAC
21952046 TATTGACCAT
Statistics
Matches: 68, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
10 4 0.06
11 60 0.88
12 4 0.06
ACGTcount: A:0.18, C:0.28, G:0.27, T:0.28
Consensus pattern (10 bp):
GACCGTTGAC
Found at i:21951985 original size:33 final size:33
Alignment explanation
Indices: 21951897--21952015 Score: 95
Period size: 33 Copynumber: 3.6 Consensus size: 33
21951887 AAGTCAAACT
*
21951897 GTTGATCGACCGTTGACC-AGCCGTTGA-CAGACC
1 GTTGATCGACCGTTGACCGA-CCGTTGACCAG-TC
* * * **
21951930 ATTGATC-AGTCATTGATTGACCGTTGACCAGTC
1 GTTGATCGA-CCGTTGACCGACCGTTGACCAGTC
*
21951963 GTTGATCGACCGTTGACCGACCGTTGATCTA-TC
1 GTTGATCGACCGTTGACCGACCGTTGA-CCAGTC
21951996 GTTGA-CTGACCGTTGACCGA
1 GTTGATC-GACCGTTGACCGA
21952016 TTGTTGACTG
Statistics
Matches: 68, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
32 2 0.03
33 59 0.87
34 7 0.10
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (33 bp):
GTTGATCGACCGTTGACCGACCGTTGACCAGTC
Found at i:21951990 original size:22 final size:22
Alignment explanation
Indices: 21951897--21952045 Score: 108
Period size: 22 Copynumber: 6.8 Consensus size: 22
21951887 AAGTCAAACT
21951897 GTTGATCGACCGTTGACCAGCC
1 GTTGATCGACCGTTGACCAGCC
* * *
21951919 GTTGA-CAGACCATTGATCAGTC
1 GTTGATC-GACCGTTGACCAGCC
* * *
21951941 ATTGATTGACCGTTGACCAGTC
1 GTTGATCGACCGTTGACCAGCC
21951963 GTTGATCGACCGTTGACC-GACC
1 GTTGATCGACCGTTGACCAG-CC
* * *
21951985 GTTGATCTATCGTTGA-CTGACC
1 GTTGATCGACCGTTGACCAG-CC
* ** *
21952007 GTTGACCGATTGTTGA-CTGACC
1 GTTGATCGACCGTTGACCAG-CC
*
21952029 GTTGACCGACCGTTGAC
1 GTTGATCGACCGTTGAC
21952046 TATTGACCAT
Statistics
Matches: 105, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
21 3 0.03
22 102 0.97
ACGTcount: A:0.20, C:0.26, G:0.26, T:0.28
Consensus pattern (22 bp):
GTTGATCGACCGTTGACCAGCC
Found at i:21952022 original size:33 final size:33
Alignment explanation
Indices: 21951948--21952045 Score: 103
Period size: 33 Copynumber: 3.0 Consensus size: 33
21951938 GTCATTGATT
*
21951948 GACCGTTGAC-CAGTCGTTGA-TCGACCGTTGACC
1 GACCGTTGACTGA-TCGTTGACT-GACCGTTGACC
21951981 GACCGTTGATCT-ATCGTTGACTGACCGTTGACC
1 GACCGTTGA-CTGATCGTTGACTGACCGTTGACC
** * *
21952014 GATTGTTGACTGACCGTTGACCGACCGTTGAC
1 GACCGTTGACTGATCGTTGACTGACCGTTGAC
21952046 TATTGACCAT
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
32 2 0.04
33 52 0.91
34 3 0.05
ACGTcount: A:0.18, C:0.28, G:0.27, T:0.28
Consensus pattern (33 bp):
GACCGTTGACTGATCGTTGACTGACCGTTGACC
Found at i:21952036 original size:7 final size:7
Alignment explanation
Indices: 21952024--21952080 Score: 57
Period size: 7 Copynumber: 8.6 Consensus size: 7
21952014 GATTGTTGAC
21952024 TGACCGT
1 TGACCGT
21952031 TGACC--
1 TGACCGT
21952036 -GACCGT
1 TGACCGT
**
21952042 TGACTAT
1 TGACCGT
*
21952049 TGACCAT
1 TGACCGT
21952056 TGACCGT
1 TGACCGT
21952063 TGACCGT
1 TGACCGT
*
21952070 TGACTGT
1 TGACCGT
21952077 TGAC
1 TGAC
21952081 TTTAATTGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
4 4 0.10
7 38 0.90
ACGTcount: A:0.19, C:0.26, G:0.25, T:0.30
Consensus pattern (7 bp):
TGACCGT
Found at i:21952058 original size:14 final size:14
Alignment explanation
Indices: 21952036--21952080 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
21952026 ACCGTTGACC
*
21952036 GACCGTTGACTATT
1 GACCGTTGACTGTT
* *
21952050 GACCATTGACCGTT
1 GACCGTTGACTGTT
21952064 GACCGTTGACTGTT
1 GACCGTTGACTGTT
21952078 GAC
1 GAC
21952081 TTTAATTGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (14 bp):
GACCGTTGACTGTT
Found at i:21952072 original size:21 final size:18
Alignment explanation
Indices: 21951970--21952073 Score: 63
Period size: 18 Copynumber: 5.6 Consensus size: 18
21951960 GTCGTTGATC
21951970 GACCGTTGACCGACCGTT
1 GACCGTTGACCGACCGTT
*
21951988 GATCTATCGTTGACTGACCGTT
1 GA-C---CGTTGACCGACCGTT
**
21952010 GACCGATTG-TTGA-C--T
1 GACCG-TTGACCGACCGTT
21952025 GACCGTTGACCGACCGTT
1 GACCGTTGACCGACCGTT
**
21952043 GACTATTGACCATTGACCGTT
1 GACCGTTGACC---GACCGTT
21952064 GACCGTTGAC
1 GACCGTTGAC
21952074 TGTTGACTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 21
0.69 0.08 0.22
Matches are distributed among these distances:
14 3 0.05
15 8 0.12
16 1 0.02
17 1 0.02
18 17 0.26
19 4 0.06
21 16 0.24
22 16 0.24
ACGTcount: A:0.19, C:0.27, G:0.25, T:0.29
Consensus pattern (18 bp):
GACCGTTGACCGACCGTT
Found at i:21955419 original size:21 final size:21
Alignment explanation
Indices: 21955390--21955435 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
21955380 TTTAAATTTA
*
21955390 CTGCGACAACTTGACATTCTC
1 CTGCAACAACTTGACATTCTC
21955411 CTGCAACAACTTGACATTCTC
1 CTGCAACAACTTGACATTCTC
21955432 CTGC
1 CTGC
21955436 GCTGGTGCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.35, G:0.13, T:0.28
Consensus pattern (21 bp):
CTGCAACAACTTGACATTCTC
Found at i:21958975 original size:25 final size:25
Alignment explanation
Indices: 21958939--21958993 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
21958929 TTATTCCTGC
21958939 AGAAAACTAAAGA-AAACAAGTTAAA-
1 AGAAAACTAAAGACAAA-AAG-TAAAT
21958964 AGAAAA-TAAAAGACAAAAAGTAAAT
1 AGAAAACT-AAAGACAAAAAGTAAAT
21958989 AGAAA
1 AGAAA
21958994 GATTGCAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
24 5 0.19
25 19 0.70
26 3 0.11
ACGTcount: A:0.71, C:0.05, G:0.13, T:0.11
Consensus pattern (25 bp):
AGAAAACTAAAGACAAAAAGTAAAT
Found at i:21963355 original size:18 final size:18
Alignment explanation
Indices: 21963314--21963357 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
21963304 AACATGTGGT
* *
21963314 TGCATATGATTATATGAC
1 TGCATCTGAGTATATGAC
*
21963332 TGCATCTGAGTATGTGAC
1 TGCATCTGAGTATATGAC
21963350 TGCATCTG
1 TGCATCTG
21963358 GTCAGGCTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (18 bp):
TGCATCTGAGTATATGAC
Found at i:21970858 original size:28 final size:29
Alignment explanation
Indices: 21970800--21970858 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 29
21970790 AGGATTGGAT
*
21970800 CAAATCAAAATTTCATATATAAAATTGCA
1 CAAATCAAAATTTCATATATAAAATTACA
* *
21970829 CAAATCAAAATTT-ATGTATACAATTACA
1 CAAATCAAAATTTCATATATAAAATTACA
21970857 CA
1 CA
21970859 TTAAACCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.51, C:0.15, G:0.03, T:0.31
Consensus pattern (29 bp):
CAAATCAAAATTTCATATATAAAATTACA
Found at i:21971097 original size:135 final size:134
Alignment explanation
Indices: 21970897--21971309 Score: 493
Period size: 135 Copynumber: 3.0 Consensus size: 134
21970887 GATTTATCTC
*
21970897 TATATTTAAAGAATTTATGAAACAAAGTAAAAAAAAATGGTATGAACATATGTCAACATACTTTA
1 TATATTTAAAGAATTTATGAAACAAA-TAAAAAAAAA-GGTATGAACATATGTCAACTTACTTTA
* * *
21970962 ATGCCAAATGTAAAAAACTATAATGTGAATATGGCATAAAATTTCCTTTTTTATATAAAACTTGT
64 ATGCCAAATGTAAAAAATTATAATATGAATATGGCATAAAATTTCCTTTTTTAGATAAAACTTGT
21971027 CATATT
129 CATATT
*
21971033 TATATTTAAAGAATTTATGAAACAAATAAGCAAAAAAGGTATGAACATATGTCAACTTACTTTAA
1 TATATTTAAAGAATTTATGAAACAAATAA-AAAAAAAGGTATGAACATATGTCAACTTACTTTAA
* * *
21971098 TGCCAAATGTAAAAAAAATTATAATATGAATATGGCATAATATTTCCTTTTCTAGATAAAACTTA
65 TGCCAAATGT--AAAAAATTATAATATGAATATGGCATAAAATTTCCTTTTTTAGATAAAACTTG
21971163 TCATATT
128 TCATATT
* *
21971170 T-TA---AAA-AATTTATGAAGCAAATAAATTAAAAAAAAGGTAT-AGACATGTGTCAACTTACT
1 TATATTTAAAGAATTTATGAAACAAAT--A--AAAAAAAAGGTATGA-ACATATGTCAACTTACT
* * * *
21971229 TTAATACCAAATGTAAAAAATTTATAATCTG-A-ATGAC-TAAAATTTCTTTTTTTAAGATAAAA
61 TTAATGCCAAATGTAAAAAA-TTATAATATGAATATGGCATAAAATTTCCTTTTTT-AGATAAAA
* *
21971291 TTTTGTAATATAT
124 -CTTGTCATAT-T
21971304 TATATT
1 TATATT
21971310 ATTTATACTT
Statistics
Matches: 242, Mismatches: 20, Indels: 29
0.83 0.07 0.10
Matches are distributed among these distances:
131 13 0.05
132 27 0.11
133 17 0.07
134 13 0.05
135 82 0.34
136 35 0.14
137 55 0.23
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (134 bp):
TATATTTAAAGAATTTATGAAACAAATAAAAAAAAAGGTATGAACATATGTCAACTTACTTTAAT
GCCAAATGTAAAAAATTATAATATGAATATGGCATAAAATTTCCTTTTTTAGATAAAACTTGTCA
TATT
Found at i:21972267 original size:39 final size:39
Alignment explanation
Indices: 21972224--21972335 Score: 143
Period size: 39 Copynumber: 2.9 Consensus size: 39
21972214 TAATAAGGCA
* * * *
21972224 TTTACAGTGTCACCGTCAGTTCAGTGTTGTATTGTAGTG
1 TTTACAGTGTCACTGTCAATTCAGTATTGTATTATAGTG
* ** *
21972263 TTTACAGTGTCACTGCCAATTCAGTACAGTATTATGGTG
1 TTTACAGTGTCACTGTCAATTCAGTATTGTATTATAGTG
*
21972302 TTTACAGTGTCACTATCAATTCAGTATTGTATTA
1 TTTACAGTGTCACTGTCAATTCAGTATTGTATTA
21972336 CAATCGCAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (39 bp):
TTTACAGTGTCACTGTCAATTCAGTATTGTATTATAGTG
Found at i:21972332 original size:78 final size:77
Alignment explanation
Indices: 21972102--21972334 Score: 243
Period size: 78 Copynumber: 3.0 Consensus size: 77
21972092 CATAGCTACA
* * * *
21972102 CAGTGTTTACAGTGTCATTTCCAGCTCAGTACGATATTACGGTGTTTATAGTGTCACTGTCAATT
1 CAGTGTTTACAGTGTCATTGCCAACTCAGTACG-TATTAAGGTGTTTACAGTGTCACTGTCAATT
* *
21972167 CAATATTGGATTG
65 CAGTATTGTATTG
* * * * ** * *
21972180 CAGTGTTTATAGTGTCATTGCC-AGTCCGATACCGTAATAAGGCATTTACAGTGTCACCGTCAGT
1 CAGTGTTTACAGTGTCATTGCCAACTCAG-TA-CGTATTAAGGTGTTTACAGTGTCACTGTCAAT
*
21972244 TCAGTGTTGTATTG
64 TCAGTATTGTATTG
* * * * *
21972258 TAGTGTTTACAGTGTCACTGCCAATTCAGTACAGTATTATGGTGTTTACAGTGTCACTATCAATT
1 CAGTGTTTACAGTGTCATTGCCAACTCAGTAC-GTATTAAGGTGTTTACAGTGTCACTGTCAATT
21972323 CAGTATTGTATT
65 CAGTATTGTATT
21972335 ACAATCGCAA
Statistics
Matches: 123, Mismatches: 28, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
77 4 0.03
78 113 0.92
79 6 0.05
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (77 bp):
CAGTGTTTACAGTGTCATTGCCAACTCAGTACGTATTAAGGTGTTTACAGTGTCACTGTCAATTC
AGTATTGTATTG
Found at i:21979249 original size:21 final size:22
Alignment explanation
Indices: 21979209--21979252 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
21979199 ATTATAAGAA
21979209 AGATTAATTAAGGCTAAGTAAG
1 AGATTAATTAAGGCTAAGTAAG
*
21979231 AGATTAATTAA-GTTAAGTAAG
1 AGATTAATTAAGGCTAAGTAAG
21979252 A
1 A
21979253 AAGCCTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.48, C:0.02, G:0.20, T:0.30
Consensus pattern (22 bp):
AGATTAATTAAGGCTAAGTAAG
Found at i:21981556 original size:31 final size:31
Alignment explanation
Indices: 21981521--21981596 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
21981511 AATTAAAATT
*
21981521 ATTTAATAATTTTAT-TATTTCAAAAAAATAA
1 ATTTAATAATTTTATAT-TTTAAAAAAAATAA
21981552 ATTTAATAATTTTATATTTTAAAAAAAATAA
1 ATTTAATAATTTTATATTTTAAAAAAAATAA
*
21981583 TTTTAATAATTTTA
1 ATTTAATAATTTTA
21981597 AAATCATTTG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
31 41 0.98
32 1 0.02
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (31 bp):
ATTTAATAATTTTATATTTTAAAAAAAATAA
Found at i:21981574 original size:22 final size:24
Alignment explanation
Indices: 21981556--21981599 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
21981546 AAATAAATTT
21981556 AATAATTTT-AT-ATTTTAAAAAA
1 AATAATTTTAATAATTTTAAAAAA
21981578 AATAATTTTAATAATTTTAAAA
1 AATAATTTTAATAATTTTAAAA
21981600 TCATTTGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 9 0.45
23 2 0.10
24 9 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
AATAATTTTAATAATTTTAAAAAA
Found at i:21985453 original size:15 final size:14
Alignment explanation
Indices: 21985417--21985464 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
21985407 CTTTTAAAAA
21985417 TTATAAATATTTTAT
1 TTAT-AATATTTTAT
* *
21985432 TAAATAATTTTTTTAT
1 T-TATAA-TATTTTAT
21985448 TTATAATATTTTAT
1 TTATAATATTTTAT
21985462 TTA
1 TTA
21985465 AGGTGTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
14 10 0.37
15 7 0.26
16 10 0.37
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TTATAATATTTTAT
Found at i:21997004 original size:12 final size:12
Alignment explanation
Indices: 21996987--21997025 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
21996977 GTCCTCCATA
21996987 ATGCCCACGACC
1 ATGCCCACGACC
*
21996999 ATGCCCATGACC
1 ATGCCCACGACC
* *
21997011 ATGTCCACGATC
1 ATGCCCACGACC
21997023 ATG
1 ATG
21997026 ACCTCTATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.38, G:0.18, T:0.18
Consensus pattern (12 bp):
ATGCCCACGACC
Found at i:22022897 original size:159 final size:158
Alignment explanation
Indices: 22022608--22022921 Score: 452
Period size: 159 Copynumber: 2.0 Consensus size: 158
22022598 TCGGAGTTCC
* * *
22022608 AAAATTGAAGGACGTTCTAAGATATTTTGAAGAGGGTATCCGATTTGCATGAATTACGAAAATCA
1 AAAATTGAAGGACGTTCTAAGATATTTTGAAGAGGATATCCGATTTACATGAACTACGAAAATCA
* * * *
22022673 CACCTAGCACGTTAGGGCGCGATTTTTCGAGGTTTTCACACGAAAGGACATTGCCTTGTTCTGTT
66 CACCTAACACGTTAGAGCGCGACTTTTCGAGGTTTTCACACGAAAGGACATTGCCTCGTTCTG-T
22022738 TTTAAAATCATTTATATATATAGATACAT
130 TTTAAAATCATTTATATATATAGATACAT
* * * *
22022767 AAAATTGAAGGATGTTTTGAA-ATCTTTTGAAGAGGATATCCGATTTACGTGAACTACGAAAATC
1 AAAATTGAAGGACGTTCT-AAGATATTTTGAAGAGGATATCCGATTTACATGAACTACGAAAATC
* * *
22022831 ACA-CTCAACCCGTTAGAGCGCGACTTTTCGAGGTTTTCACATGAAAGGACATTGCCTCGTTTTG
65 ACACCT-AACACGTTAGAGCGCGACTTTTCGAGGTTTTCACACGAAAGGACATTGCCTCGTTCTG
*
22022895 TTTTAAAATCATTTGTATATATAGATA
129 TTTTAAAATCATTTATATATATAGATA
22022922 TATATTTTGA
Statistics
Matches: 138, Mismatches: 15, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
158 28 0.20
159 108 0.78
160 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33
Consensus pattern (158 bp):
AAAATTGAAGGACGTTCTAAGATATTTTGAAGAGGATATCCGATTTACATGAACTACGAAAATCA
CACCTAACACGTTAGAGCGCGACTTTTCGAGGTTTTCACACGAAAGGACATTGCCTCGTTCTGTT
TTAAAATCATTTATATATATAGATACAT
Found at i:22023761 original size:59 final size:58
Alignment explanation
Indices: 22023504--22023790 Score: 267
Period size: 59 Copynumber: 4.9 Consensus size: 58
22023494 ATCAGGGGGT
* * * *
22023504 AAAATGGTAA-TTTTGGAAGTGTCGAGGTCAAAAATGTAATTTTTGGAAG-TTCGAGGGTA
1 AAAAT-GTAATTTTTGGAAGT-TCGGGGGCAAAAATGTAATTTTTGAAAGTTTCG-GGGCA
** * * *
22023563 AAAATGTAATTTTTGGAAGTTTTAGGGTCAAAAATGGAATTTTTGAAAGTTTAGGGGCA
1 AAAATGTAATTTTTGGAAG-TTCGGGGGCAAAAATGTAATTTTTGAAAGTTTCGGGGCA
* * * * * * *
22023622 AAAATGTAA-TTTTGGAAGTTCGAGGGAAAAAATATGATTTCTGAATAGTTTCAGAGTCA
1 AAAATGTAATTTTTGGAAGTTCGGGGGCAAAAATGTAATTTTTGAA-AGTTTC-GGGGCA
** * *
22023681 AAAATGTAATTTTTGGAAGTTCGGGGGCAAATTTGTAATTTTTGAAAGTTTTGGGGTTA
1 AAAATGTAATTTTTGGAAGTTCGGGGGCAAAAATGTAATTTTTGAAAGTTTCGGGG-CA
* * *
22023740 AAAATGTAATTTTTGGTAGTTCGGGGG-AAAAATATGATTTTTGAATAGTTT
1 AAAATGTAATTTTTGGAAGTTCGGGGGCAAAAATGTAATTTTTGAA-AGTTT
22023791 AGGGACTTTC
Statistics
Matches: 185, Mismatches: 35, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
57 18 0.10
58 34 0.18
59 100 0.54
60 33 0.18
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.36
Consensus pattern (58 bp):
AAAATGTAATTTTTGGAAGTTCGGGGGCAAAAATGTAATTTTTGAAAGTTTCGGGGCA
Found at i:22023771 original size:29 final size:29
Alignment explanation
Indices: 22023504--22023782 Score: 222
Period size: 29 Copynumber: 9.5 Consensus size: 29
22023494 ATCAGGGGGT
* *
22023504 AAAATGGTAA-TTTTGGAAGTGTCGAGGTCA
1 AAAAT-GTAATTTTTGGAAGT-TCGGGGGCA
* *
22023534 AAAATGTAATTTTTGGAAGTTCGAGGGTA
1 AAAATGTAATTTTTGGAAGTTCGGGGGCA
** *
22023563 AAAATGTAATTTTTGGAAGTTTTAGGGTCA
1 AAAATGTAATTTTTGGAAG-TTCGGGGGCA
* * **
22023593 AAAATGGAATTTTTGAAAGTTTAGGGGCA
1 AAAATGTAATTTTTGGAAGTTCGGGGGCA
* *
22023622 AAAATGTAA-TTTTGGAAGTTCGAGGGAA
1 AAAATGTAATTTTTGGAAGTTCGGGGGCA
* * * * * * *
22023650 AAAATATGATTTCTGAATAGTTTCAGAGTCA
1 AAAATGTAATTTTTGGA-AG-TTCGGGGGCA
22023681 AAAATGTAATTTTTGGAAGTTCGGGGGCA
1 AAAATGTAATTTTTGGAAGTTCGGGGGCA
** * * **
22023710 AATTTGTAATTTTTGAAAGTTTTGGGGTTA
1 AAAATGTAATTTTTGGAAG-TTCGGGGGCA
*
22023740 AAAATGTAATTTTTGGTAGTTCGGGGG-A
1 AAAATGTAATTTTTGGAAGTTCGGGGGCA
* *
22023768 AAAATATGATTTTTG
1 AAAATGTAATTTTTG
22023783 AATAGTTTAG
Statistics
Matches: 197, Mismatches: 46, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
28 35 0.18
29 81 0.41
30 63 0.32
31 18 0.09
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAGTTCGGGGGCA
Found at i:22024884 original size:16 final size:16
Alignment explanation
Indices: 22024807--22024891 Score: 59
Period size: 16 Copynumber: 5.3 Consensus size: 16
22024797 TTTATTAAAA
22024807 ATTAATAAT-ATTATT
1 ATTAATAATAATTATT
* *
22024822 ATTAAAAAATATTTATT
1 ATT-AATAATAATTATT
* * *
22024839 GTCATTAA-AATTTATT
1 ATTAATAATAA-TTATT
22024855 ATTAATAATAATTATT
1 ATTAATAATAATTATT
* *
22024871 ATTGAAT-ATTATTACT
1 ATT-AATAATAATTATT
22024887 ATTAA
1 ATTAA
22024892 CATTCACTAA
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
15 6 0.11
16 36 0.68
17 11 0.21
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (16 bp):
ATTAATAATAATTATT
Found at i:22025631 original size:13 final size:14
Alignment explanation
Indices: 22025602--22025636 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
22025592 TTTAGTCCAA
*
22025602 TTGGGCTTGTAAAC
1 TTGGACTTGTAAAC
22025616 TTGGACTTGT-AAC
1 TTGGACTTGTAAAC
22025629 TTGGACTT
1 TTGGACTT
22025637 TATGGACACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.20, C:0.14, G:0.26, T:0.40
Consensus pattern (14 bp):
TTGGACTTGTAAAC
Found at i:22025673 original size:6 final size:6
Alignment explanation
Indices: 22025664--22025726 Score: 62
Period size: 6 Copynumber: 10.8 Consensus size: 6
22025654 TTAAGATTAT
*
22025664 TTTAAA TTTAAA -GTAAA TTTAAA TTTAAGA --TAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA
*
22025710 ATT-AA TTTAAA CTTTAA
1 TTTAAA TTTAAA -TTTAA
22025727 TTAAAAATCA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
4 1 0.02
5 11 0.23
6 29 0.62
7 6 0.13
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (6 bp):
TTTAAA
Found at i:22025684 original size:17 final size:17
Alignment explanation
Indices: 22025664--22025726 Score: 83
Period size: 17 Copynumber: 3.6 Consensus size: 17
22025654 TTAAGATTAT
22025664 TTTAAATTTAAAGTAAA
1 TTTAAATTTAAAGTAAA
22025681 TTTAAATTT-AAGATAAA
1 TTTAAATTTAAAG-TAAA
* *
22025698 TTTAAATTTAAAATTAA
1 TTTAAATTTAAAGTAAA
22025715 TTTAAACTTTAA
1 TTTAAA-TTTAA
22025727 TTAAAAATCA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
16 3 0.07
17 31 0.76
18 7 0.17
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (17 bp):
TTTAAATTTAAAGTAAA
Found at i:22025716 original size:11 final size:11
Alignment explanation
Indices: 22025668--22025728 Score: 59
Period size: 11 Copynumber: 5.4 Consensus size: 11
22025658 GATTATTTTA
* *
22025668 AATTTAAAGTA
1 AATTTAAATTT
22025679 AATTTAAATTT
1 AATTTAAATTT
**
22025690 AAGATAAATTT
1 AATTTAAATTT
*
22025701 AAATTTAAAATT
1 -AATTTAAATTT
22025713 AATTTAAACTTT
1 AATTTAAA-TTT
22025725 AATT
1 AATT
22025729 AAAAATCAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
11 26 0.65
12 14 0.35
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (11 bp):
AATTTAAATTT
Found at i:22025720 original size:23 final size:23
Alignment explanation
Indices: 22025668--22025734 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 23
22025658 GATTATTTTA
* *
22025668 AATTTAAA-GTAAATTTAAATTT
1 AATTTAAATTTAAATTTAAAATT
**
22025690 AAGATAAATTTAAATTTAAAATT
1 AATTTAAATTTAAATTTAAAATT
*
22025713 AATTTAAACTTT-AATTAAAAAT
1 AATTTAAA-TTTAAATTTAAAAT
22025735 CAAAAAATCC
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
22 6 0.17
23 27 0.75
24 3 0.08
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (23 bp):
AATTTAAATTTAAATTTAAAATT
Found at i:22028636 original size:17 final size:18
Alignment explanation
Indices: 22028609--22028642 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
22028599 GCTTCAGGGA
22028609 ATATGCCAAAATCTTCAC
1 ATATGCCAAAATCTTCAC
22028627 ATAT-CCAAAATCTTCA
1 ATATGCCAAAATCTTCA
22028643 TAATTGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.41, C:0.26, G:0.03, T:0.29
Consensus pattern (18 bp):
ATATGCCAAAATCTTCAC
Found at i:22032551 original size:18 final size:18
Alignment explanation
Indices: 22032510--22032552 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
22032500 TCTAACATAT
* * *
22032510 AAAATTTAAATCTATAAT
1 AAAATGTAAATATATAAA
*
22032528 ATAATGTAAATATATAAA
1 AAAATGTAAATATATAAA
22032546 AAAATGT
1 AAAATGT
22032553 TAAGTTTCCT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (18 bp):
AAAATGTAAATATATAAA
Found at i:22033762 original size:35 final size:36
Alignment explanation
Indices: 22033687--22033762 Score: 100
Period size: 35 Copynumber: 2.1 Consensus size: 36
22033677 ATATAATCAA
**
22033687 TCACATGACATGAAAAACATACCCACATATTTTCTG
1 TCACATGACATGAAAAACATACCCACATATTCACTG
* * *
22033723 TCACATGGCATG-AAGACATACCCACATATTCACTT
1 TCACATGACATGAAAAACATACCCACATATTCACTG
22033758 TCACA
1 TCACA
22033763 AGAGTCATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
35 24 0.69
36 11 0.31
ACGTcount: A:0.37, C:0.28, G:0.09, T:0.26
Consensus pattern (36 bp):
TCACATGACATGAAAAACATACCCACATATTCACTG
Found at i:22033831 original size:20 final size:20
Alignment explanation
Indices: 22033789--22033831 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
22033779 TCTAGCATAT
* * *
22033789 TTCACAACATCTCATGTTTA
1 TTCACAACATCACATCTTAA
*
22033809 TTCACAATATCACATCTTAA
1 TTCACAACATCACATCTTAA
22033829 TTC
1 TTC
22033832 TCTTTTCACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.26, G:0.02, T:0.40
Consensus pattern (20 bp):
TTCACAACATCACATCTTAA
Found at i:22033936 original size:31 final size:30
Alignment explanation
Indices: 22033898--22033974 Score: 127
Period size: 30 Copynumber: 2.5 Consensus size: 30
22033888 CTTACACTCG
22033898 AAATTTAATAATTTTATTATTTCAAAAAAAT
1 AAATTTAATAATTTTA-TATTTCAAAAAAAT
* *
22033929 AATTTTAATAATTTTATATTTTAAAAAAAT
1 AAATTTAATAATTTTATATTTCAAAAAAAT
22033959 AAATTTAATAATTTTA
1 AAATTTAATAATTTTA
22033975 AAATCATTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
30 28 0.65
31 15 0.35
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (30 bp):
AAATTTAATAATTTTATATTTCAAAAAAAT
Found at i:22037486 original size:2 final size:2
Alignment explanation
Indices: 22037479--22037512 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
22037469 AATTTCCCTT
22037479 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22037513 ATAGTTGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22038508 original size:17 final size:18
Alignment explanation
Indices: 22038476--22038513 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
22038466 TTTTTAACGA
*
22038476 AATAAAATAAATAAATTT
1 AATAAAATAAATAAATAT
*
22038494 AATAAATTAAA-AAATAT
1 AATAAAATAAATAAATAT
22038511 AAT
1 AAT
22038514 TTTTATAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAAATAAATAAATAT
Found at i:22048558 original size:17 final size:17
Alignment explanation
Indices: 22048536--22048574 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
22048526 AGGTGAAGAA
* *
22048536 CTTGTTCGTTGAGAGTT
1 CTTGTTCGTAGAGAATT
22048553 CTTGTTCGTAGAGAATT
1 CTTGTTCGTAGAGAATT
22048570 CTTGT
1 CTTGT
22048575 CAAGGTGGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.15, C:0.13, G:0.26, T:0.46
Consensus pattern (17 bp):
CTTGTTCGTAGAGAATT
Found at i:22050504 original size:209 final size:211
Alignment explanation
Indices: 22050141--22050585 Score: 635
Period size: 209 Copynumber: 2.1 Consensus size: 211
22050131 ATTTCTAACA
** *
22050141 ATATTCACTAGAAAGAATCAATATGAGCCACCAAATATAGTAACTCTTTTTAGGTACACTAGATG
1 ATATTCACTAGAAAGAATCAATACAAGCCACCAAATATAGTAACTATTTTTAGGTACACTAGATG
* * *
22050206 ACTTTTAAAAGACTATGGATTCATCACCAATATTTAATTATCTATTTTACAAGGATGATAAGTTC
66 AATTTTAAAAGAATATGGAGTCATCACCAATATTTAATTATCTATTTTACAAGGATGATAAGTTC
* * * * *
22050271 TAGTTTTTCTAAATGAAGATTGTTCGTATTATCACCAAAATCACTTAGATT-CGATGAATTTAAT
131 CAATTCTTCTAAATAAAAATTGTTCGTATTATCACCAAAATCACTTAGATTACGATGAATTTAAT
*
22050335 CAGAAGATAATATTTG
196 CAGAAGATAAGATTTG
* * * **
22050351 ATATTCACTGGAAAGAATCAATACAAGGCACCAAATGTAGTAAC-ATTTTTAGGTAGGCTAGATG
1 ATATTCACTAGAAAGAATCAATACAAGCCACCAAATATAGTAACTATTTTTAGGTACACTAGATG
* * *
22050415 AATTTTAAAAGAATATGGAGTCGTTACCAAT-TTCTAATTATCTATTTTACAAGGATGATAATTT
66 AATTTTAAAAGAATATGGAGTCATCACCAATATT-TAATTATCTATTTTACAAGGATGATAAGTT
* *
22050479 CCAATTCTTCTAAATAAAAATTGTTCGTATTATCACCAAATTCACTTAGATTAGATGATGAATTT
130 CCAATTCTTCTAAATAAAAATTGTTCGTATTATCACCAAAATCACTTAGATT--ACGATGAATTT
*
22050544 AATCAGAAGATGAGATTTG
193 AATCAGAAGATAAGATTTG
22050563 ATATTCACTAGAAAGAATCAATA
1 ATATTCACTAGAAAGAATCAATA
22050586 TGATGCACTA
Statistics
Matches: 207, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
208 2 0.01
209 118 0.57
210 39 0.19
212 48 0.23
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35
Consensus pattern (211 bp):
ATATTCACTAGAAAGAATCAATACAAGCCACCAAATATAGTAACTATTTTTAGGTACACTAGATG
AATTTTAAAAGAATATGGAGTCATCACCAATATTTAATTATCTATTTTACAAGGATGATAAGTTC
CAATTCTTCTAAATAAAAATTGTTCGTATTATCACCAAAATCACTTAGATTACGATGAATTTAAT
CAGAAGATAAGATTTG
Found at i:22068804 original size:21 final size:20
Alignment explanation
Indices: 22068765--22068805 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22068755 GTAAAAACGC
* *
22068765 ATAAAAATCACATCCAAACA
1 ATAAAAATAACATCAAAACA
22068785 ATAAAAATAACATCTAAAACA
1 ATAAAAATAACATC-AAAACA
22068806 GCAACAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.63, C:0.20, G:0.00, T:0.17
Consensus pattern (20 bp):
ATAAAAATAACATCAAAACA
Found at i:22068815 original size:12 final size:12
Alignment explanation
Indices: 22068800--22068972 Score: 66
Period size: 12 Copynumber: 15.2 Consensus size: 12
22068790 AATAACATCT
22068800 AAAACAGCAACA
1 AAAACAGCAACA
* * *
22068812 AAAATAACGA-A
1 AAAACAGCAACA
* **
22068823 AAAACAACATTA
1 AAAACAGCAACA
22068835 AAAACA--A-CA
1 AAAACAGCAACA
* *
22068844 AAAATAGCCACA
1 AAAACAGCAACA
22068856 AAAACAGCAACA
1 AAAACAGCAACA
* * *
22068868 AAAATAACCACA
1 AAAACAGCAACA
22068880 AAAACAGCAAC-
1 AAAACAGCAACA
* * *
22068891 AAAATAGTAACC
1 AAAACAGCAACA
*
22068903 AAAACAG-TA-A
1 AAAACAGCAACA
*
22068913 AAAA-AGC-ACT
1 AAAACAGCAACA
*
22068923 AAAACAGTAACA
1 AAAACAGCAACA
22068935 AAAA-A-CAACA
1 AAAACAGCAACA
22068945 CAAAA-AG-AACA
1 -AAAACAGCAACA
*
22068956 AAATATAGCAACCA
1 AAA-ACAGCAA-CA
22068970 AAA
1 AAA
22068973 TAGTAAAAAA
Statistics
Matches: 120, Mismatches: 26, Indels: 28
0.69 0.15 0.16
Matches are distributed among these distances:
9 9 0.08
10 16 0.13
11 31 0.26
12 57 0.47
13 2 0.02
14 5 0.04
ACGTcount: A:0.67, C:0.20, G:0.06, T:0.07
Consensus pattern (12 bp):
AAAACAGCAACA
Found at i:22068871 original size:33 final size:32
Alignment explanation
Indices: 22068807--22068871 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 32
22068797 TCTAAAACAG
* **
22068807 CAACAAAAATAACGAAAAAACAACATTAAAAA
1 CAACAAAAATAACCAAAAAACAACAACAAAAA
* *
22068839 CAACAAAAATAGCCACAAAAACAGCAACAAAAA
1 CAACAAAAATAACCA-AAAAACAACAACAAAAA
22068872 TAACCACAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.69, C:0.20, G:0.05, T:0.06
Consensus pattern (32 bp):
CAACAAAAATAACCAAAAAACAACAACAAAAA
Found at i:22068909 original size:23 final size:24
Alignment explanation
Indices: 22068839--22068903 Score: 103
Period size: 24 Copynumber: 2.6 Consensus size: 24
22068829 ACATTAAAAA
*
22068839 CAACAAAAATAGCCACAAAAACAG
1 CAACAAAAATAACCACAAAAACAG
22068863 CAACAAAAATAACCACAAAAACAG
1 CAACAAAAATAACCACAAAAACAG
22068887 CAACAAAATAGTAACCA
1 CAACAAAA-A-TAACCA
22068904 AAACAGTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
24 31 0.82
25 1 0.03
26 6 0.16
ACGTcount: A:0.63, C:0.25, G:0.06, T:0.06
Consensus pattern (24 bp):
CAACAAAAATAACCACAAAAACAG
Found at i:22086049 original size:19 final size:17
Alignment explanation
Indices: 22086027--22086071 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
22086017 TCGTTCTTTT
*
22086027 AAAATAAAAGTCGCAAAAA
1 AAAATAAAACT-GC-AAAA
22086046 AAAAGTAAAACTGCAAAA
1 AAAA-TAAAACTGCAAAA
22086064 AAAATAAA
1 AAAATAAA
22086072 TTATACCATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 4 0.17
18 8 0.33
19 6 0.25
20 6 0.25
ACGTcount: A:0.71, C:0.09, G:0.09, T:0.11
Consensus pattern (17 bp):
AAAATAAAACTGCAAAA
Found at i:22094061 original size:19 final size:19
Alignment explanation
Indices: 22094039--22094098 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 19
22094029 TTAAATAATG
22094039 TATTATTAACAAA-TATTTA
1 TATT-TTAACAAATTATTTA
*
22094058 TATTTTTAAGAAATTATTTA
1 TA-TTTTAACAAATTATTTA
*
22094078 AATTTTAACATAATGTATTTA
1 TATTTTAACA-AAT-TATTTA
22094099 CAAATCTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 16 0.47
20 12 0.35
21 6 0.18
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50
Consensus pattern (19 bp):
TATTTTAACAAATTATTTA
Found at i:22094547 original size:28 final size:30
Alignment explanation
Indices: 22094488--22094548 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 30
22094478 AGGCTAAATA
* **
22094488 AGGTCTATAGGCCGATTTTTATAATTGTTT
1 AGGTCTATAGGCCGATTTTTAAAATTAATT
22094518 AGGTCT-TAGGCCG-TTTTTAAAATTAATT
1 AGGTCTATAGGCCGATTTTTAAAATTAATT
22094546 AGG
1 AGG
22094549 GAAATAGGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 15 0.54
29 7 0.25
30 6 0.21
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (30 bp):
AGGTCTATAGGCCGATTTTTAAAATTAATT
Found at i:22098303 original size:21 final size:21
Alignment explanation
Indices: 22098274--22098325 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
22098264 GGAGTTTTTA
22098274 GTATCGGTAGAAG-CATGACAT
1 GTATCGGTAGAAGTCAT-ACAT
* *
22098295 GTTTCGGTAGAAGTCATACTT
1 GTATCGGTAGAAGTCATACAT
22098316 GTATCGGTAG
1 GTATCGGTAG
22098326 TATTGTCTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 24 0.89
22 3 0.11
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (21 bp):
GTATCGGTAGAAGTCATACAT
Found at i:22099118 original size:30 final size:30
Alignment explanation
Indices: 22099082--22099146 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
22099072 GCAGTTATAA
22099082 CTCAACCGAGCCAAGATAACCCATTGCTTC
1 CTCAACCGAGCCAAGATAACCCATTGCTTC
22099112 CTCAACCGAGCCAAGATAACCCATTGCTTC
1 CTCAACCGAGCCAAGATAACCCATTGCTTC
22099142 CTCAA
1 CTCAA
22099147 GATATGTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.31, C:0.37, G:0.12, T:0.20
Consensus pattern (30 bp):
CTCAACCGAGCCAAGATAACCCATTGCTTC
Found at i:22100667 original size:24 final size:22
Alignment explanation
Indices: 22100619--22100667 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 22
22100609 AGATATTATA
*
22100619 GTTAGGGTTTTATTTTATTAGG
1 GTTAGGGTTTTATTTTATTAAG
22100641 GTTAGGGTTTATTATTTCT-TTAAG
1 GTTAGGG-TT-TTATTT-TATTAAG
22100665 GTT
1 GTT
22100668 TAAGATTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 7 0.30
23 2 0.09
24 13 0.57
25 1 0.04
ACGTcount: A:0.18, C:0.02, G:0.24, T:0.55
Consensus pattern (22 bp):
GTTAGGGTTTTATTTTATTAAG
Found at i:22104630 original size:9 final size:9
Alignment explanation
Indices: 22104616--22104655 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
22104606 CAAGTATAAA
22104616 AATTAACCG
1 AATTAACCG
**
22104625 AATTAATAG
1 AATTAACCG
22104634 AATTAACCG
1 AATTAACCG
*
22104643 AATTAATCG
1 AATTAACCG
22104652 AATT
1 AATT
22104656 GAAACAAGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (9 bp):
AATTAACCG
Found at i:22104637 original size:18 final size:18
Alignment explanation
Indices: 22104616--22104655 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
22104606 CAAGTATAAA
22104616 AATTAACCGAATTAATAG
1 AATTAACCGAATTAATAG
*
22104634 AATTAACCGAATTAATCG
1 AATTAACCGAATTAATAG
22104652 AATT
1 AATT
22104656 GAAACAAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (18 bp):
AATTAACCGAATTAATAG
Found at i:22105318 original size:22 final size:21
Alignment explanation
Indices: 22105290--22105333 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
22105280 GGTTGAGTAC
*
22105290 TTGGGTTTATATATATATTGGA
1 TTGGGTTTATAT-TAGATTGGA
22105312 TTGGGTTTATATTAGATTGGA
1 TTGGGTTTATATTAGATTGGA
22105333 T
1 T
22105334 CTGAGTAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (21 bp):
TTGGGTTTATATTAGATTGGA
Found at i:22108736 original size:16 final size:16
Alignment explanation
Indices: 22108692--22108737 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
22108682 AAATTTTGTC
22108692 TAAGTACAGTTCAT-A
1 TAAGTACAGTTCATAA
* *
22108707 TTAG-AAAGGTTCATAA
1 TAAGTACA-GTTCATAA
22108723 TAAGTACAGTTCATA
1 TAAGTACAGTTCATA
22108738 CAAACAGAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
14 2 0.08
15 9 0.38
16 11 0.46
17 2 0.08
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (16 bp):
TAAGTACAGTTCATAA
Found at i:22110637 original size:43 final size:43
Alignment explanation
Indices: 22110589--22110736 Score: 183
Period size: 43 Copynumber: 3.4 Consensus size: 43
22110579 TTTATTAAAA
* *
22110589 AAACGCCGTTATAA-AATATAGTCTTTAACGGCGCTTTTCCCAC
1 AAACGCCGCTA-AAGAACATAGTCTTTAACGGCGCTTTTCCCAC
* * *
22110632 AAACGCCGCTAAAGAACATAGTCTTTACCGGTGCTTTTCCCAT
1 AAACGCCGCTAAAGAACATAGTCTTTAACGGCGCTTTTCCCAC
* *
22110675 AAACGCCACTAAAGAACAT-GATCTTTAACGGCGCTTTCCCCAC
1 AAACGCCGCTAAAGAACATAG-TCTTTAACGGCGCTTTTCCCAC
* *
22110718 AAACGCCGTTAAAAAACAT
1 AAACGCCGCTAAAGAACAT
22110737 GGTCGGTCTT
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 3 0.03
43 87 0.97
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATAGTCTTTAACGGCGCTTTTCCCAC
Found at i:22110791 original size:90 final size:86
Alignment explanation
Indices: 22110610--22110791 Score: 213
Period size: 90 Copynumber: 2.1 Consensus size: 86
22110600 TAAAATATAG
* * * * *
22110610 TCTTTAACGGCGCTTTTCCCACAAACGCCGCTAAAGAACATAGTCTTTACCGGTGCTTTTCCCAT
1 TCTTTAACGGCGCTTTCCCCACAAACGCCGCTAAAAAACATAGTCTTTACCAGTGCTTTTCACAC
22110675 AAACGCCACTAAAGAACATGA
66 AAACGCCACTAAAGAACATGA
* * *
22110696 TCTTTAACGGCGCTTTCCCCACAAACGCCGTTAAAAAACATGGTCGGTCTTTAGCAGTGCTTTTC
1 TCTTTAACGGCGCTTTCCCCACAAACGCCGCTAAAAAACA---T-AGTCTTTACCAGTGCTTTTC
* * *
22110761 ATACAAAC-CCTGCTAAAGAATATGA
62 ACACAAACGCC-ACTAAAGAACATGA
22110786 TCTTTA
1 TCTTTA
22110792 GCAGTGCTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
86 37 0.46
89 3 0.04
90 40 0.50
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (86 bp):
TCTTTAACGGCGCTTTCCCCACAAACGCCGCTAAAAAACATAGTCTTTACCAGTGCTTTTCACAC
AAACGCCACTAAAGAACATGA
Found at i:22113415 original size:12 final size:12
Alignment explanation
Indices: 22113398--22113422 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22113388 TCTATAAAAG
22113398 AAGATTAAGAAA
1 AAGATTAAGAAA
22113410 AAGATTAAGAAA
1 AAGATTAAGAAA
22113422 A
1 A
22113423 CCATCTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (12 bp):
AAGATTAAGAAA
Found at i:22115519 original size:41 final size:40
Alignment explanation
Indices: 22115465--22115637 Score: 168
Period size: 41 Copynumber: 4.2 Consensus size: 40
22115455 TTGCTTAATT
*
22115465 TTTAGCGGCGCTTTCACATAAGCGTCGCTATTGCTCTGACC
1 TTTAGCGGCGCTTTC-CATAAGCGCCGCTATTGCTCTGACC
* * * * *
22115506 TTTAGCGGTGCTTTTTCAAAAGCGCCGTTATTACTCTGACC
1 TTTAGCGGCGC-TTTCCATAAGCGCCGCTATTGCTCTGACC
*** * * * *
22115547 TTTAGCGGTAATTTCCTATAAACGTCGTTATTGCTTTGACC
1 TTTAGCGGCGCTTTCC-ATAAGCGCCGCTATTGCTCTGACC
*
22115588 TTTAGCGGCGCTTTCCCATAAGCGCCGCTATTGCT-TTACC
1 TTTAGCGGCGCTTT-CCATAAGCGCCGCTATTGCTCTGACC
*
22115628 TTTTGCGGCG
1 TTTAGCGGCG
22115638 TTTATATAAA
Statistics
Matches: 107, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
40 17 0.16
41 85 0.79
42 5 0.05
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (40 bp):
TTTAGCGGCGCTTTCCATAAGCGCCGCTATTGCTCTGACC
Found at i:22121524 original size:19 final size:19
Alignment explanation
Indices: 22121493--22121535 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
22121483 GGGTAAATAG
22121493 TTAA-TTAAATTAT-TTAAT
1 TTAATTTAAATTATATT-AT
*
22121511 TTAATTTAATTTATATTAT
1 TTAATTTAAATTATATTAT
22121530 TTAATT
1 TTAATT
22121536 ATATTGTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 16 0.73
20 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTAATTTAAATTATATTAT
Found at i:22121531 original size:14 final size:13
Alignment explanation
Indices: 22121493--22121540 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
22121483 GGGTAAATAG
*
22121493 TTAATTAAATTAT
1 TTAATTATATTAT
22121506 TTAATT-TA--AT
1 TTAATTATATTAT
22121516 TTAATTTATATTAT
1 TTAA-TTATATTAT
22121530 TTAATTATATT
1 TTAATTATATT
22121541 GTACATTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
10 6 0.20
11 2 0.07
12 3 0.10
13 13 0.43
14 6 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTAATTATATTAT
Found at i:22135068 original size:26 final size:26
Alignment explanation
Indices: 22135039--22135088 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
22135029 TAGCTACTAT
**
22135039 CCCAACCCACAGCTTGTGTGAGCAGG
1 CCCAACCCACAGCTCATGTGAGCAGG
* *
22135065 CCCATCTCACAGCTCATGTGAGCA
1 CCCAACCCACAGCTCATGTGAGCA
22135089 TAAATTTAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.24, C:0.36, G:0.22, T:0.18
Consensus pattern (26 bp):
CCCAACCCACAGCTCATGTGAGCAGG
Found at i:22136759 original size:127 final size:127
Alignment explanation
Indices: 22136533--22136789 Score: 442
Period size: 127 Copynumber: 2.0 Consensus size: 127
22136523 AATTCATCTA
22136533 TACAATACCTTGTCGACGCATCCAACATTGCTACTTAGCAAAATCAGTGATCCATTCCAAACCTT
1 TACAATACCTTGTCGACGCATCCAACATTGCTACTTAGCAAAATCAGTGATCCATTCCAAACCTT
* * *
22136598 TACACTTGATCACACTTTATTTTTCTGCATTTAAATACTTAACACTTCAACACACTTTGATT
66 TACACTTGATCACACTTTACTTTTCTACATTTAAATACTCAACACTTCAACACACTTTGATT
* * * *
22136660 TACAATACCTTGTCGACGCATCTAGCGTTGCTACTTAGCGAAATCAGTGATCCATTCCAAACCTT
1 TACAATACCTTGTCGACGCATCCAACATTGCTACTTAGCAAAATCAGTGATCCATTCCAAACCTT
*
22136725 TACACTTGATCACACTTTACTTTTCTACATTTAAATACTCAACACTTCAATACACTTTGATT
66 TACACTTGATCACACTTTACTTTTCTACATTTAAATACTCAACACTTCAACACACTTTGATT
22136787 TAC
1 TAC
22136790 TTTCAGTTGC
Statistics
Matches: 122, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
127 122 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.35
Consensus pattern (127 bp):
TACAATACCTTGTCGACGCATCCAACATTGCTACTTAGCAAAATCAGTGATCCATTCCAAACCTT
TACACTTGATCACACTTTACTTTTCTACATTTAAATACTCAACACTTCAACACACTTTGATT
Found at i:22142137 original size:19 final size:20
Alignment explanation
Indices: 22142114--22142175 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 20
22142104 AATATATAAA
22142114 AATAAAAATAAATAAAATTT
1 AATAAAAATAAATAAAATTT
* * *
22142134 -ATAAAAATTATTAAATTTT
1 AATAAAAATAAATAAAATTT
22142153 AATAAAAATATAA-AAATATTT
1 AATAAAAATA-AATAAA-ATTT
22142174 AA
1 AA
22142176 AATTTATTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
19 16 0.48
20 11 0.33
21 6 0.18
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AATAAAAATAAATAAAATTT
Found at i:22142165 original size:8 final size:8
Alignment explanation
Indices: 22142154--22142219 Score: 53
Period size: 8 Copynumber: 7.8 Consensus size: 8
22142144 TTAAATTTTA
22142154 ATAAAAAT
1 ATAAAAAT
22142162 ATAAAAAT
1 ATAAAAAT
*
22142170 ATTTAAAATTT
1 A--TAAAA-AT
22142181 ATTAAAAAT
1 A-TAAAAAT
* *
22142190 AGAAAAAC
1 ATAAAAAT
22142198 ATAAAAA-
1 ATAAAAAT
22142205 ATATAAAAT
1 ATA-AAAAT
22142214 ATAAAA
1 ATAAAA
22142220 TTTTATAAAG
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
7 3 0.06
8 27 0.56
9 5 0.10
10 11 0.23
11 2 0.04
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (8 bp):
ATAAAAAT
Found at i:22142175 original size:28 final size:28
Alignment explanation
Indices: 22142124--22142196 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
22142114 AATAAAAATA
* *
22142124 AATAAAATTTATAAAAATTATTAAATTTT
1 AATAAAA-ATATAAAAATTATTAAAATTT
22142153 AATAAAAATATAAAAA-TATTTAAAATTT
1 AATAAAAATATAAAAATTA-TTAAAATTT
* *
22142181 ATTAAAAATAGAAAAA
1 AATAAAAATATAAAAA
22142197 CATAAAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
27 2 0.05
28 30 0.77
29 7 0.18
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (28 bp):
AATAAAAATATAAAAATTATTAAAATTT
Found at i:22142205 original size:28 final size:28
Alignment explanation
Indices: 22142150--22142206 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
22142140 ATTATTAAAT
* * **
22142150 TTTAATAAAAATATAAAAATATTTAAAA
1 TTTAATAAAAATAGAAAAACATAAAAAA
*
22142178 TTTATTAAAAATAGAAAAACATAAAAAA
1 TTTAATAAAAATAGAAAAACATAAAAAA
22142206 T
1 T
22142207 ATAAAATATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (28 bp):
TTTAATAAAAATAGAAAAACATAAAAAA
Found at i:22142277 original size:19 final size:18
Alignment explanation
Indices: 22142234--22142286 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
22142224 ATAAAGTCTT
22142234 AAAAAATATAAAAATGTA
1 AAAAAATATAAAAATGTA
* *
22142252 AAGAAATATAAAATTCGTA
1 AAAAAATATAAAAAT-GTA
22142271 AAAAAATAATAAAAAT
1 AAAAAAT-ATAAAAAT
22142287 TATCATACCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 13 0.45
19 9 0.31
20 7 0.24
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.23
Consensus pattern (18 bp):
AAAAAATATAAAAATGTA
Found at i:22142547 original size:20 final size:21
Alignment explanation
Indices: 22142509--22142558 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
22142499 ATTTTTTTCT
*
22142509 AATTTTTAATAAAGCTTAA-A
1 AATTTTTAATAAAACTTAACA
* * *
22142529 TATTTTTATTAAAATTTAACA
1 AATTTTTAATAAAACTTAACA
22142550 AATTTTTAA
1 AATTTTTAA
22142559 AGAAAAGCAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (21 bp):
AATTTTTAATAAAACTTAACA
Found at i:22150192 original size:46 final size:47
Alignment explanation
Indices: 22150136--22150233 Score: 110
Period size: 46 Copynumber: 2.1 Consensus size: 47
22150126 GTTAAAATTT
* * * ***
22150136 CCAGATCAGATATATA-TGGTCAAGCCACTAT-ATTGCAGCCAAGCTG
1 CCAGAACAGATATA-AGTGGTCAAACCACCATAATTGCAAAAAAGCTG
*
22150182 CCAGAACAGATGTAAGTGGTCAAACCACCATAATTGCAAAAAAGCTG
1 CCAGAACAGATATAAGTGGTCAAACCACCATAATTGCAAAAAAGCTG
22150229 CCAGA
1 CCAGA
22150234 TAAAATCGTG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
45 1 0.02
46 25 0.58
47 17 0.40
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (47 bp):
CCAGAACAGATATAAGTGGTCAAACCACCATAATTGCAAAAAAGCTG
Found at i:22153148 original size:14 final size:14
Alignment explanation
Indices: 22153129--22153167 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
22153119 GTTTTTCACT
22153129 GAAAATGGCTTCCA
1 GAAAATGGCTTCCA
** *
22153143 GAAAATGATTTCTA
1 GAAAATGGCTTCCA
22153157 GAAAATGGCTT
1 GAAAATGGCTT
22153168 ACTTTTTTGG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (14 bp):
GAAAATGGCTTCCA
Found at i:22156314 original size:10 final size:10
Alignment explanation
Indices: 22156301--22156326 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
22156291 TTTGATTAGA
22156301 TAAAATTATT
1 TAAAATTATT
22156311 TAAAATTATT
1 TAAAATTATT
22156321 TAAAAT
1 TAAAAT
22156327 AATATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TAAAATTATT
Found at i:22156939 original size:15 final size:15
Alignment explanation
Indices: 22156920--22156954 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
22156910 AAATTGTGTG
22156920 ATTAATTTAAAATTA
1 ATTAATTTAAAATTA
* *
22156935 TTTAATTTGAAATTA
1 ATTAATTTAAAATTA
22156950 ATTAA
1 ATTAA
22156955 AGTATGGTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (15 bp):
ATTAATTTAAAATTA
Found at i:22157706 original size:26 final size:27
Alignment explanation
Indices: 22157674--22157728 Score: 103
Period size: 26 Copynumber: 2.1 Consensus size: 27
22157664 GTAAAAGTGA
22157674 AGCTAATTTTGATATATTT-CTCAAGT
1 AGCTAATTTTGATATATTTGCTCAAGT
22157700 AGCTAATTTTGATATATTTGCTCAAGT
1 AGCTAATTTTGATATATTTGCTCAAGT
22157727 AG
1 AG
22157729 ACAAGATGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.44
Consensus pattern (27 bp):
AGCTAATTTTGATATATTTGCTCAAGT
Found at i:22157814 original size:25 final size:25
Alignment explanation
Indices: 22157786--22157859 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
22157776 TTCGACGCGC
22157786 AATTGAAAGTGGCACTTCGGTGCAA
1 AATTGAAAGTGGCACTTCGGTGCAA
* *
22157811 AATTGAAAGTGACATTTCGGTGC--
1 AATTGAAAGTGGCACTTCGGTGCAA
* **
22157834 AATTGACAGTGGCACTTTAGTGCAA
1 AATTGAAAGTGGCACTTCGGTGCAA
22157859 A
1 A
22157860 TTAGTTGTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
23 18 0.45
25 22 0.55
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (25 bp):
AATTGAAAGTGGCACTTCGGTGCAA
Found at i:22157856 original size:23 final size:23
Alignment explanation
Indices: 22157784--22157858 Score: 80
Period size: 23 Copynumber: 3.2 Consensus size: 23
22157774 CTTTCGACGC
*
22157784 GCAATTGAAAGTGGCACTTCGGT
1 GCAATTGAAAGTGGCACTTTGGT
*
22157807 GCAAAATTGAAAGTGACA-TTTCGGT
1 GC--AATTGAAAGTGGCACTTT-GGT
* *
22157832 GCAATTGACAGTGGCACTTTAGT
1 GCAATTGAAAGTGGCACTTTGGT
22157855 GCAA
1 GCAA
22157859 ATTAGTTGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
23 20 0.47
24 5 0.12
25 18 0.42
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (23 bp):
GCAATTGAAAGTGGCACTTTGGT
Found at i:22158173 original size:22 final size:22
Alignment explanation
Indices: 22158148--22158192 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
22158138 TTAGCTAAAT
22158148 TTTAATTAATTAATTAAT-TAAG
1 TTTAATTAA-TAATTAATATAAG
*
22158170 TTTAATTAATAGTTAATATAAG
1 TTTAATTAATAATTAATATAAG
22158192 T
1 T
22158193 ATATAACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (22 bp):
TTTAATTAATAATTAATATAAG
Found at i:22161987 original size:29 final size:30
Alignment explanation
Indices: 22161917--22161992 Score: 109
Period size: 30 Copynumber: 2.6 Consensus size: 30
22161907 AAAATAACAA
* *
22161917 TGACACACGACCATGTGGAGAGGCTGTGTG
1 TGACACACGACCGTGTGGAGAGGCTCTGTG
* *
22161947 TGACACATGACCGTGTGTAGAGGC-CTGTG
1 TGACACACGACCGTGTGGAGAGGCTCTGTG
22161976 TGACACACGACCGTGTG
1 TGACACACGACCGTGTG
22161993 ACAGCTCGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 20 0.49
30 21 0.51
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.21
Consensus pattern (30 bp):
TGACACACGACCGTGTGGAGAGGCTCTGTG
Found at i:22167703 original size:18 final size:17
Alignment explanation
Indices: 22167675--22167708 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
22167665 GATTTAGATT
22167675 CAATTAAGTAATTAACG
1 CAATTAAGTAATTAACG
22167692 CAATTAAAGTAATTAAC
1 CAATT-AAGTAATTAAC
22167709 CTAACACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (17 bp):
CAATTAAGTAATTAACG
Found at i:22182519 original size:40 final size:40
Alignment explanation
Indices: 22182471--22182691 Score: 194
Period size: 40 Copynumber: 5.5 Consensus size: 40
22182461 GTAGTCTAGT
* * *
22182471 AGTGTTTACAGTGTCA-CGACTAGTTTAGTAATAATATTAC
1 AGTGTTTACAGTGTCATTG-CCAGTTTAGTAATAATATCAC
* * * * * *
22182511 AGTATTTACATTGTCATTGTCAGTTCAGTAGTGATATCAC
1 AGTGTTTACAGTGTCATTGCCAGTTTAGTAATAATATCAC
* * * * *
22182551 AGTGTTTACAGTGTCATTGCTAGTTTAGTGAGATTATCGC
1 AGTGTTTACAGTGTCATTGCCAGTTTAGTAATAATATCAC
* * **
22182591 AGTGTTTACAGTGCCATTGCCAG-TCAGTAATAATATTGC
1 AGTGTTTACAGTGTCATTGCCAGTTTAGTAATAATATCAC
* * * * **
22182630 AGTGTTTACAGTGTCACTACCAGTTTAGTAGTAAAATCGT
1 AGTGTTTACAGTGTCATTGCCAGTTTAGTAATAATATCAC
*
22182670 AGTGTTTACAATGTCATTGCCA
1 AGTGTTTACAGTGTCATTGCCA
22182692 ATTCCTAAAT
Statistics
Matches: 141, Mismatches: 38, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
39 31 0.22
40 109 0.77
41 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (40 bp):
AGTGTTTACAGTGTCATTGCCAGTTTAGTAATAATATCAC
Found at i:22182655 original size:79 final size:79
Alignment explanation
Indices: 22182471--22182691 Score: 237
Period size: 79 Copynumber: 2.8 Consensus size: 79
22182461 GTAGTCTAGT
* * ** * * *
22182471 AGTGTTTACAGTGTCACGACTAGTTTAGTAATAATATTACAGTATTTACATTGTCATTGTCAGTT
1 AGTGTTTACAGTGTCACTACTAGTTTAGT-AGAATATCGCAGTGTTTACAATGTCATTGCCAGTT
* *
22182536 CAGTAGTGATATCAC
65 CAGTAATAATATCAC
* * * * *
22182551 AGTGTTTACAGTGTCATTGCTAGTTTAGTGAGATTATCGCAGTGTTTACAGTGCCATTGCCAG-T
1 AGTGTTTACAGTGTCACTACTAGTTTAGT-AGAATATCGCAGTGTTTACAATGTCATTGCCAGTT
**
22182615 CAGTAATAATATTGC
65 CAGTAATAATATCAC
* * *
22182630 AGTGTTTACAGTGTCACTACCAGTTTAGTAGTAAAATCGTAGTGTTTACAATGTCATTGCCA
1 AGTGTTTACAGTGTCACTACTAGTTTAGTAG-AATATCGCAGTGTTTACAATGTCATTGCCA
22182692 ATTCCTAAAT
Statistics
Matches: 116, Mismatches: 24, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
78 2 0.02
79 63 0.54
80 51 0.44
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (79 bp):
AGTGTTTACAGTGTCACTACTAGTTTAGTAGAATATCGCAGTGTTTACAATGTCATTGCCAGTTC
AGTAATAATATCAC
Found at i:22183198 original size:40 final size:40
Alignment explanation
Indices: 22183135--22183313 Score: 200
Period size: 40 Copynumber: 4.5 Consensus size: 40
22183125 AGTCTACCAA
* * *
22183135 TGTTTACAGTGTCAC-GACTAGTTTAGTAATTATATTGCAG
1 TGTTTACAGTGTCACTG-CCAGTTTAGTAATAATATTGTAG
* * ** *
22183175 TGTTTATAGCGTCACTGCCAGTTTAGTAGGAAGATTGTAG
1 TGTTTACAGTGTCACTGCCAGTTTAGTAATAATATTGTAG
* * *
22183215 TGTTTACAGTGTCACTGCTAG-TTAGTAATAATATTGAAT
1 TGTTTACAGTGTCACTGCCAGTTTAGTAATAATATTGTAG
* * * *
22183254 TGTTTACAGTGTCACTACCAGTTCAGTAGTAATATCGTAG
1 TGTTTACAGTGTCACTGCCAGTTTAGTAATAATATTGTAG
22183294 TGTTTACAGTGTCACTGCCA
1 TGTTTACAGTGTCACTGCCA
22183314 ATTCAGTCAC
Statistics
Matches: 113, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 32 0.28
40 80 0.71
41 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (40 bp):
TGTTTACAGTGTCACTGCCAGTTTAGTAATAATATTGTAG
Found at i:22183268 original size:79 final size:80
Alignment explanation
Indices: 22183135--22183311 Score: 241
Period size: 79 Copynumber: 2.2 Consensus size: 80
22183125 AGTCTACCAA
* * * * *
22183135 TGTTTACAGTGTCAC-GACTAGTTTAGTAATTATATTGCAGTGTTTATAGCGTCACTGCCAGTTT
1 TGTTTACAGTGTCACTG-CTAGTTTAGTAATAATATTGAAGTGTTTACAGCGTCACTACCAGTTC
*
22183199 AGTAGGAAGATTGTAG
65 AGTAGGAAGATCGTAG
* *
22183215 TGTTTACAGTGTCACTGCTAG-TTAGTAATAATATTGAATTGTTTACAGTGTCACTACCAGTTCA
1 TGTTTACAGTGTCACTGCTAGTTTAGTAATAATATTGAAGTGTTTACAGCGTCACTACCAGTTCA
* *
22183279 GTAGTAATATCGTAG
66 GTAGGAAGATCGTAG
22183294 TGTTTACAGTGTCACTGC
1 TGTTTACAGTGTCACTGC
22183312 CAATTCAGTC
Statistics
Matches: 86, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
79 66 0.77
80 19 0.22
81 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (80 bp):
TGTTTACAGTGTCACTGCTAGTTTAGTAATAATATTGAAGTGTTTACAGCGTCACTACCAGTTCA
GTAGGAAGATCGTAG
Found at i:22183304 original size:662 final size:661
Alignment explanation
Indices: 22182035--22183309 Score: 1890
Period size: 662 Copynumber: 1.9 Consensus size: 661
22182025 TCCGATACAA
* *
22182035 CTAAATATAACACCTTAAACCCGACCCACATGAAATGACCAAGTCAAGAATATCACAAAGTTATC
1 CTAAATATAACACCTTAAACCCGACCCAAATGAAATGACCAAGTCAAGAATATCACAAAGTCATC
* * * * * *
22182100 ACAGGGAAAACCATATGATAACACATTGGAAGCAAGTACATAATTAAGTTATATAGACAATAGGT
66 ACAAGGAAAAACATACGATAACACATTGGAAGCAAGCACACAATTAAGTTATATAGACAATAGGC
* *
22182165 TCAACCCCACAGCACAAGTATTAACATGAATTCGATAGTTCCACACTTAAGTTTCATCGTAACAT
131 TCAACCCCACAGCACAAGTATCAACATGAATTAGATAGTTCCACACTTAAGTTTCATCGTAACAT
* * * * *
22182230 AACTATAACTAGTTATAAGTCTTATAAGTCCTAAGAGTCCTACAAATGACCGAACTCCTAGTCCA
196 AACTATAACTAGCTATAAGTCCTATAAGTCCTAAAAGTCCTAAAAATGACCGAACACCTAGTCCA
*
22182295 TCGGCCTTCAAGTCTGGTAGACCCTGAAACATCATTAAATAAGTCAGTATCAAACATAATGATAT
261 TCGGCCTTCAAGTCTGGTAGACCCTAAAACATCATTAAATAAGTCAGTATCAAACATAATGATAT
*
22182360 TTTTGTAAATCTCATCAACGTAATTTATAGAAACATTTATCCGGTTTTATAATCAGATTCACAAA
326 TTTTGTAAATCTCATCAACGTAATTTATAGAAACATTTATCCAGTTTTATAATCAGATTCACAAA
** *
22182425 TCTCAACCAGTTAGACAGTTGCATTACAGCTCATTGGTAGTCTAGTAGTGTTTACAGTGTCACGA
391 TCTCAACCAGTTAGACAGTTGCATTACAGCTCATTGGTAGTCTACCAATGTTTACAGTGTCACGA
** * * *
22182490 CTAGTTTAGTAATAATATTACAGTATTTACATTGTCATTGTCAGTTCAGTAGTGATATCACAGTG
456 CTAGTTTAGTAATAATATTACAGTATTTACAGCGTCACTGCCAGTTCAGTAGTGAGATCACAGTG
* * * * * *
22182555 TTTACAGTGTCATTGCTAGTTTAGTGAGATTATCGCAGTGTTTACAGTGCCATTGCCAGTCAGTA
521 TTTACAGTGTCACTGCTAGTTTAGTAAGAATATCGAAGTGTTTACAGTGCCACTACCAGTCAGTA
*
22182620 ATAATATTGCAGTGTTTACAGTGTCACTACCAGTTTAGTAGTAAAATCGTAGTGTTTACAATGTC
586 ATAATATCGCAGTGTTTACAGTGTCACTACCAGTTTAGTAGTAAAATCGTAGTGTTTACAATGTC
22182685 ATTGCCAATTC
651 ATTGCCAATTC
* * *
22182696 CTAAATGTAACACCTTAAACCCGGCCTAAATGAAATGACCAAGTCAAGAATATCACAAAGTCATC
1 CTAAATATAACACCTTAAACCCGACCCAAATGAAATGACCAAGTCAAGAATATCACAAAGTCATC
* *
22182761 ACGAATGAAAAACATACGATAACACATTGGAGGCAAGCACACAATTAAGTTATATAGACAATAGG
66 AC-AAGGAAAAACATACGATAACACATTGGAAGCAAGCACACAATTAAGTTATATAGACAATAGG
* * * * *
22182826 CTCAA-CCCAGATCAGAAGTATCAACATGAATTAGGTAGTTCCACACTTAAGTTTCATCGTAGCA
130 CTCAACCCCACAGCACAAGTATCAACATGAATTAGATAGTTCCACACTTAAGTTTCATCGTAACA
* * * *
22182890 TAACTATAACTAGCTATAAGTCCTATAAGTCTTAAAAGTCCTAAAAATGACTGAGCACCTCGTCC
195 TAACTATAACTAGCTATAAGTCCTATAAGTCCTAAAAGTCCTAAAAATGACCGAACACCTAGTCC
* * *
22182955 GTCGGCCTTCAAGTCTGGGTAGACCCTAAAACATCATTAAATAAGTCAGTGTGAAACATAATGAT
260 ATCGGCCTTCAAGTCT-GGTAGACCCTAAAACATCATTAAATAAGTCAGTATCAAACATAATGAT
*
22183020 ATTTTTGTAAATCTCATCAATGTAATTTATAGAAACATTTATCCAGTTTTATAATCAGATTCACA
324 ATTTTTGTAAATCTCATCAACGTAATTTATAGAAACATTTATCCAGTTTTATAATCAGATTCACA
* * *
22183085 GATCTCAACCAGTTAGATAGTTGTATTACAGCTCATTGGTAGTCTACCAATGTTTACAGTGTCAC
389 AATCTCAACCAGTTAGACAGTTGCATTACAGCTCATTGGTAGTCTACCAATGTTTACAGTGTCAC
* * * * * ***
22183150 GACTAGTTTAGTAATTATATTGCAGTGTTTATAGCGTCACTGCCAGTTTAGTAG-GAAGATTGTA
454 GACTAGTTTAGTAATAATATTACAGTATTTACAGCGTCACTGCCAGTTCAGTAGTG-AGATCACA
* * * *
22183214 GTGTTTACAGTGTCACTGCTAG-TTAGTAATAATATTGAATTGTTTACAGTGTCACTACCAGTTC
518 GTGTTTACAGTGTCACTGCTAGTTTAGTAAGAATATCGAAGTGTTTACAGTGCCACTACCAG-TC
* *
22183278 AGTAGTAATATCGTAGTGTTTACAGTGTCACT
582 AGTAATAATATCGCAGTGTTTACAGTGTCACT
22183310 GCCAATTCAG
Statistics
Matches: 543, Mismatches: 67, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
661 216 0.40
662 327 0.60
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (661 bp):
CTAAATATAACACCTTAAACCCGACCCAAATGAAATGACCAAGTCAAGAATATCACAAAGTCATC
ACAAGGAAAAACATACGATAACACATTGGAAGCAAGCACACAATTAAGTTATATAGACAATAGGC
TCAACCCCACAGCACAAGTATCAACATGAATTAGATAGTTCCACACTTAAGTTTCATCGTAACAT
AACTATAACTAGCTATAAGTCCTATAAGTCCTAAAAGTCCTAAAAATGACCGAACACCTAGTCCA
TCGGCCTTCAAGTCTGGTAGACCCTAAAACATCATTAAATAAGTCAGTATCAAACATAATGATAT
TTTTGTAAATCTCATCAACGTAATTTATAGAAACATTTATCCAGTTTTATAATCAGATTCACAAA
TCTCAACCAGTTAGACAGTTGCATTACAGCTCATTGGTAGTCTACCAATGTTTACAGTGTCACGA
CTAGTTTAGTAATAATATTACAGTATTTACAGCGTCACTGCCAGTTCAGTAGTGAGATCACAGTG
TTTACAGTGTCACTGCTAGTTTAGTAAGAATATCGAAGTGTTTACAGTGCCACTACCAGTCAGTA
ATAATATCGCAGTGTTTACAGTGTCACTACCAGTTTAGTAGTAAAATCGTAGTGTTTACAATGTC
ATTGCCAATTC
Found at i:22185049 original size:20 final size:20
Alignment explanation
Indices: 22185024--22185066 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
22185014 TCTTAAAAAT
*
22185024 AGTGGAATTAAGTCATGAAC
1 AGTGGAATCAAGTCATGAAC
* *
22185044 AGTGGAGTCATGTCATGAAC
1 AGTGGAATCAAGTCATGAAC
22185064 AGT
1 AGT
22185067 AAAAATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.26
Consensus pattern (20 bp):
AGTGGAATCAAGTCATGAAC
Found at i:22191029 original size:29 final size:27
Alignment explanation
Indices: 22190997--22191078 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 27
22190987 GCTATAAGTC
*
22190997 TCTATACTCTTTATAAGTTTAAAATTTAG
1 TCTATA-T-TTTATAATTTTAAAATTTAG
* *
22191026 TCTATATATTTTTATTTTTAGAAATTTAG
1 TCTATAT-TTTATAATTTTA-AAATTTAG
22191055 TCTTATATTTTAT-ATTTTAAAATT
1 TC-TATATTTTATAATTTTAAAATT
22191079 CAAGTCCAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
27 5 0.11
28 15 0.33
29 20 0.44
30 5 0.11
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.56
Consensus pattern (27 bp):
TCTATATTTTATAATTTTAAAATTTAG
Found at i:22191062 original size:28 final size:29
Alignment explanation
Indices: 22191014--22191078 Score: 100
Period size: 28 Copynumber: 2.3 Consensus size: 29
22191004 TCTTTATAAG
22191014 TTTAAAATTTAGTCTATATATTTT-TATT
1 TTTAAAATTTAGTCTATATATTTTATATT
22191042 TTTAGAAATTTAGTCT-TATATTTTATA-T
1 TTTA-AAATTTAGTCTATATATTTTATATT
22191070 TTTAAAATT
1 TTTAAAATT
22191079 CAAGTCCAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
27 5 0.14
28 17 0.49
29 13 0.37
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (29 bp):
TTTAAAATTTAGTCTATATATTTTATATT
Found at i:22191564 original size:17 final size:17
Alignment explanation
Indices: 22191542--22191590 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
22191532 TTTTTTTAAA
22191542 AATATTTAATTTATTTT
1 AATATTTAATTTATTTT
*
22191559 AATATTTAA-TAATTTT
1 AATATTTAATTTATTTT
* *
22191575 ATACATTTTATTTATT
1 A-ATATTTAATTTATT
22191591 GAAATTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 7 0.27
17 15 0.58
18 4 0.15
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (17 bp):
AATATTTAATTTATTTT
Found at i:22192351 original size:68 final size:66
Alignment explanation
Indices: 22192276--22192432 Score: 217
Period size: 66 Copynumber: 2.3 Consensus size: 66
22192266 TTAGGGTGTG
* *
22192276 TTTAATTTATTTTCCAAAATTATAATTCT-AATTTTTTTAATTTAATTAAATAGTTGGATGACCA
1 TTTAATTTATTTTCCAAAATTATAATTCTAAATATTTTTAATTTAATCAAATAGTT-G--GACCA
22192340 TTTT
63 TTTT
* * * *
22192344 TTTAATTTATTTTCTAAAATTATAATTCTAAATATTTTTAGTTTAATCAAATGGTTGGACGATTT
1 TTTAATTTATTTTCCAAAATTATAATTCTAAATATTTTTAATTTAATCAAATAGTTGGACCATTT
22192409 T
66 T
*
22192410 TTTAATTTATTTTTCAAAATTAT
1 TTTAATTTATTTTCCAAAATTAT
22192433 GACTCCATAT
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
66 29 0.36
68 29 0.36
69 22 0.28
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (66 bp):
TTTAATTTATTTTCCAAAATTATAATTCTAAATATTTTTAATTTAATCAAATAGTTGGACCATTT
T
Found at i:22202954 original size:30 final size:30
Alignment explanation
Indices: 22202920--22203106 Score: 141
Period size: 30 Copynumber: 6.3 Consensus size: 30
22202910 AAAACTCGAA
*
22202920 TTTGACCCCCAAACTTCTTAAAAATTTGAT
1 TTTGACCCCCAAACTTCTTAAAAATTTCAT
* * *
22202950 TTTGACCCTCGAACTATC-CAAAAA-TTCAAT
1 TTTGACCCCCAAACT-TCTTAAAAATTTC-AT
* * *
22202980 TTTGACCCTCAAA-TTTTCTAAAAATTGCAT
1 TTTGACCCCCAAACTTCT-TAAAAATTTCAT
*
22203010 TTTGACCCCTAAACTT-TCTAAAAATTTCAT
1 TTTGACCCCCAAACTTCT-TAAAAATTTCAT
* * * * *
22203040 TTGGACCCCCAAGCTTTTTGAAAATTACAT
1 TTTGACCCCCAAACTTCTTAAAAATTTCAT
** * * *
22203070 TTCAACCCCTAAAC-TCTTTAAAATTTCAA
1 TTTGACCCCCAAACTTCTTAAAAATTTCAT
22203099 TTTGACCC
1 TTTGACCC
22203107 TTTTTCCTTA
Statistics
Matches: 124, Mismatches: 26, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
28 1 0.01
29 20 0.16
30 96 0.77
31 7 0.06
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (30 bp):
TTTGACCCCCAAACTTCTTAAAAATTTCAT
Found at i:22203002 original size:60 final size:60
Alignment explanation
Indices: 22202904--22203017 Score: 153
Period size: 60 Copynumber: 1.9 Consensus size: 60
22202894 GTCCCTATTT
22202904 TATCCAAAAACTCGAATTTGACCCCCAAACTTCTTAAAAATTTG-ATTTTGACCCTCGAAC
1 TATCCAAAAACTCGAATTTGACCCCCAAACTTCTTAAAAA-TTGCATTTTGACCCTCGAAC
* * *
22202964 TATCCAAAAATTC-AATTTTGACCCTCAAA-TTTTCTAAAAATTGCATTTTGACCC
1 TATCCAAAAACTCGAA-TTTGACCCCCAAACTTCT-TAAAAATTGCATTTTGACCC
22203018 CTAAACTTTC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
59 8 0.17
60 40 0.83
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.33
Consensus pattern (60 bp):
TATCCAAAAACTCGAATTTGACCCCCAAACTTCTTAAAAATTGCATTTTGACCCTCGAAC
Found at i:22203033 original size:60 final size:60
Alignment explanation
Indices: 22202920--22203106 Score: 163
Period size: 60 Copynumber: 3.1 Consensus size: 60
22202910 AAAACTCGAA
* * * *
22202920 TTTGACCCCCAAA-CTTCTTAAAAATTTG-ATTTTGA-CCCTCGAACTATCCAAAAATTCAAT
1 TTTGACCCCCAAATTTTC-TAAAAA-TTGCATTTTGACCCCT-AAACTTTCTAAAAATTCAAT
*
22202980 TTTGACCCTCAAATTTTCTAAAAATTGCATTTTGACCCCTAAACTTTCTAAAAATTTC-AT
1 TTTGACCCCCAAATTTTCTAAAAATTGCATTTTGACCCCTAAACTTTCTAAAAA-TTCAAT
* * * * ** *
22203040 TTGGACCCCCAAGCTTTT-TGAAAATTACATTTCAACCCCTAAACTCTT-TAAAATTTCAA-
1 TTTGACCCCCAA-ATTTTCTAAAAATTGCATTTTGACCCCTAAACT-TTCTAAAAATTCAAT
22203099 TTTGACCC
1 TTTGACCC
22203107 TTTTTCCTTA
Statistics
Matches: 106, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
59 13 0.12
60 77 0.73
61 16 0.15
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (60 bp):
TTTGACCCCCAAATTTTCTAAAAATTGCATTTTGACCCCTAAACTTTCTAAAAATTCAAT
Found at i:22203140 original size:86 final size:86
Alignment explanation
Indices: 22203037--22203223 Score: 277
Period size: 86 Copynumber: 2.2 Consensus size: 86
22203027 CTAAAAATTT
* **
22203037 CATTTGGACCCCCAAGCTTTTTGAAAATTACATTTCAACCCCTAAACTCTTTAAAATTTCAATTT
1 CATTTTGA-CCCCAAGCTTTTTGAAAATTACATTTCAACCCCTAAACTCTCCAAAATTTCAATTT
22203102 GACC-CTTTTTCCTTATTTTTA
65 GACCTCTTTTTCCTTATTTTTA
* * *
22203123 CATTTTGATCCCCAAGCTTTTTGAAAATTGCATTTTAACCCTTAAACTCTCCAAAATTTCAATTT
1 CATTTTGA-CCCCAAGCTTTTTGAAAATTACATTTCAACCCCTAAACTCTCCAAAATTTCAATTT
*
22203188 GACCTTTTTTTCCTTATTTTTA
65 GACCTCTTTTTCCTTATTTTTA
*
22203210 CATTTTTACCCCAA
1 CATTTTGACCCCAA
22203224 AAAATTTATT
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
86 68 0.75
87 23 0.25
ACGTcount: A:0.27, C:0.24, G:0.05, T:0.43
Consensus pattern (86 bp):
CATTTTGACCCCAAGCTTTTTGAAAATTACATTTCAACCCCTAAACTCTCCAAAATTTCAATTTG
ACCTCTTTTTCCTTATTTTTA
Found at i:22203730 original size:103 final size:104
Alignment explanation
Indices: 22203617--22203822 Score: 254
Period size: 104 Copynumber: 2.0 Consensus size: 104
22203607 AAATATTTTC
* * * * *
22203617 AAAATTGAGGCAATGTT-TCTTT-GTTTAGGGAACTCGAAAAATTGTGCTCAAATGTACTAGGTA
1 AAAATCGAGGCAATGTTCT-TTTAGTTTAGGAAACTCGAAAAATTATGCCCAAACGTACTAGGTA
*
22203680 CAATTTTTCTTTGAACCTAAATAATTGAATATCCTATTCA
65 CAATTTTTATTTGAACCTAAATAATTGAATATCCTATTCA
* * ** * ** *
22203720 AAAATCGAGGCAATGTTCTTTTATTTTAGGAAAGTCGAGGAATTATGCCCTAACGTGTTAGGTAT
1 AAAATCGAGGCAATGTTCTTTTAGTTTAGGAAACTCGAAAAATTATGCCCAAACGTACTAGGTAC
*
22203785 GATTTTTATTTGAACCTAAATAATTGAATATCCTATTC
66 AATTTTTATTTGAACCTAAATAATTGAATATCCTATTC
22203823 GGAACCAATT
Statistics
Matches: 86, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
103 19 0.22
104 67 0.78
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (104 bp):
AAAATCGAGGCAATGTTCTTTTAGTTTAGGAAACTCGAAAAATTATGCCCAAACGTACTAGGTAC
AATTTTTATTTGAACCTAAATAATTGAATATCCTATTCA
Found at i:22203896 original size:109 final size:104
Alignment explanation
Indices: 22203682--22203924 Score: 261
Period size: 109 Copynumber: 2.3 Consensus size: 104
22203672 ACTAGGTACA
* * *
22203682 ATTTTTCTTTGAACCTAAATAATTGAATATCCTATTCAAAAATCGAGGCAATGTTCTTTTATTTT
1 ATTTTTCTTTGAACCTAAATAATTGAATATCCTATTCAAAAATCAAGGCAATATTCTGTTATTTT
* * ** *
22203747 AGGAAAGTCGAGGAATTATGCCCTAACGTGTTAGGTATG
66 AGGAAACTCAAAAAATTATACCCTAACGTGTTAGGTATG
* * * *
22203786 ATTTTTATTTGAACCTAAATAATTGAATATCCTATTCGGAACCAATTAATGCTCAATATTCTGTT
1 ATTTTTCTTTGAACCTAAATAATTGAATATCCTATTC--AA-AAATCAA-G-GCAATATTCTGTT
** * *
22203851 ATTTTAGGGGACTCAAAAAATTGTACCCTAACGTGTTGGGTATG
61 ATTTTAGGAAACTCAAAAAATTATACCCTAACGTGTTAGGTATG
* * * *
22203895 ATTTTGCCTTGAACCTAAGTAATCGAATAT
1 ATTTTTCTTTGAACCTAAATAATTGAATAT
22203925 TTCGTTTTAA
Statistics
Matches: 113, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
104 36 0.32
106 2 0.02
107 4 0.04
108 1 0.01
109 70 0.62
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.37
Consensus pattern (104 bp):
ATTTTTCTTTGAACCTAAATAATTGAATATCCTATTCAAAAATCAAGGCAATATTCTGTTATTTT
AGGAAACTCAAAAAATTATACCCTAACGTGTTAGGTATG
Found at i:22208524 original size:10 final size:10
Alignment explanation
Indices: 22208511--22208551 Score: 55
Period size: 10 Copynumber: 3.9 Consensus size: 10
22208501 TAAAAAAGGA
22208511 AAAAAGAAAG
1 AAAAAGAAAG
22208521 AAAAAGAAAG
1 AAAAAGAAAG
*
22208531 AAAAATAAAACG
1 AAAAA-GAAA-G
22208543 AAAAAGAAA
1 AAAAAGAAA
22208552 AAGGAGAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
10 15 0.56
11 6 0.22
12 6 0.22
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.02
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:22208535 original size:22 final size:22
Alignment explanation
Indices: 22208509--22208551 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
22208499 AATAAAAAAG
*
22208509 GAAAAA-AGAAAGAAAAAGAAA
1 GAAAAATAAAAAGAAAAAGAAA
*
22208530 GAAAAATAAAACGAAAAAGAAA
1 GAAAAATAAAAAGAAAAAGAAA
22208552 AAGGAGAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.02
Consensus pattern (22 bp):
GAAAAATAAAAAGAAAAAGAAA
Found at i:22209018 original size:105 final size:107
Alignment explanation
Indices: 22208870--22209070 Score: 253
Period size: 105 Copynumber: 1.9 Consensus size: 107
22208860 GTCATTTTTA
** * * * * * *
22208870 ATCTTTTCATTCATGTGAGCTTTACCTCCGATAAAATTCAATTTTATTCGCCTTGCGACCATG-T
1 ATCTTTTCATTCATGCAAGCTTTACCTCCAATAAAATTCAATTTCATCCACCTTACAACCATGAT
22208934 TCAAGCATTTTTGCA-TCAAAATAACGGTTAATGAACCAATG
66 TCAAGCATTTTTGCATTCAAAATAACGGTTAATGAACCAATG
* * * * *
22208975 ATCTTTTCATTCATGCAAGTTTTGCCTTCAATTAAATTCAATTTCATCCACCTTACAACCTTGAT
1 ATCTTTTCATTCATGCAAGCTTTACCTCCAATAAAATTCAATTTCATCCACCTTACAACCATGAT
**
22209040 TCAAGCATTTTTGCATTTGAAATAACGGTTA
66 TCAAGCATTTTTGCATTCAAAATAACGGTTA
22209071 GTGGTTTAAC
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
105 50 0.63
106 16 0.20
107 13 0.16
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.38
Consensus pattern (107 bp):
ATCTTTTCATTCATGCAAGCTTTACCTCCAATAAAATTCAATTTCATCCACCTTACAACCATGAT
TCAAGCATTTTTGCATTCAAAATAACGGTTAATGAACCAATG
Found at i:22209550 original size:50 final size:50
Alignment explanation
Indices: 22209495--22209942 Score: 354
Period size: 50 Copynumber: 9.0 Consensus size: 50
22209485 AAGGAAACAT
* * *
22209495 GAAGATATGAAGGGAAAGGTTGAGGTCGCAACAACGAACCCAGTACCTTA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCAGTACCTTA
* * * * * * *
22209545 AAAGATGTGATGGGAAAGGTTAAGGCTGCAATGACGAACTCAGCACCTTA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCAGTACCTTA
** * * **
22209595 GAAGACATGAAGGGAAAGGTTGAGGTCGCAACAACGAACCTGGTACC--A
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCAGTACCTTA
* * * *
22209643 CGAAGATGTGATGGGAAAGGTTGAGGCCGCAATGGCGAACCCGGTACCTTA
1 -GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCAGTACCTTA
* * * ** *
22209694 GAATATGTGATGGGAAAGATTGAGGCCGCAACGATAAACCCAGTACGTTA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCAGTACCTTA
* * * * * *
22209744 AAAGATGTGACGGG-AAGGATTGAGGCCGTAACGACAAATCC-GATACCAT-
1 GAAGATGTGAAGGGAAAGG-TTGAGGCCGCAACGACGAACCCAG-TACCTTA
** * * *
22209793 GAAGACATAAAGGGAAAGATTGAGGCCGCAACGACAAACCCAGTACCTTA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCAGTACCTTA
* * * ** * *
22209843 AAAGATGTGATA-GG-AAGGATTGAGGCCTCAACGACAAATTCGGTACCAT-
1 GAAGATGTGA-AGGGAAAGG-TTGAGGCCGCAACGACGAACCCAGTACCTTA
* * * * *
22209892 GAAGATGTGATGGGAAAGGTGGAGGCCGCAAAGGCGAACCCAATACCTTA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCAGTACCTTA
22209942 G
1 G
22209943 GAACATGACG
Statistics
Matches: 306, Mismatches: 79, Indels: 26
0.74 0.19 0.06
Matches are distributed among these distances:
48 1 0.00
49 111 0.36
50 192 0.63
51 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (50 bp):
GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCAGTACCTTA
Done.