Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 7 of 143
Found at i:2273179 original size:27 final size:28
Alignment explanation
Indices: 2273133--2273185 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
2273123 AATTTTGGTC
2273133 AAATCAAAATTTCATGTATAAAATTATA
1 AAATCAAAATTTCATGTATAAAATTATA
* *
2273161 AAATTAAAA-TTCATGTATAAGATTA
1 AAATCAAAATTTCATGTATAAAATTA
2273186 CACATTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.36
Consensus pattern (28 bp):
AAATCAAAATTTCATGTATAAAATTATA
Found at i:2274404 original size:28 final size:28
Alignment explanation
Indices: 2274373--2274450 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
2274363 GTTTTAGGCC
2274373 TATTTATATTATTTTTTATTTTTAAAAA
1 TATTTATATTATTTTTTATTTTTAAAAA
* * *
2274401 TATTTATATTATATTATA-TTTT-ATAA
1 TATTTATATTATTTTTTATTTTTAAAAA
*
2274427 T-TTTATA-TGTTTTTTATTTATTAA
1 TATTTATATTATTTTTTATTT-TTAA
2274451 TTTTTTATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
24 6 0.15
25 8 0.20
26 6 0.15
27 5 0.12
28 16 0.39
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.65
Consensus pattern (28 bp):
TATTTATATTATTTTTTATTTTTAAAAA
Found at i:2278002 original size:28 final size:26
Alignment explanation
Indices: 2277941--2278002 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
2277931 TTAGACCAAC
*
2277941 TGGTATCTAATATTCAATATTCAATT
1 TGGTATCTAATATTCAATATACAATT
* *
2277967 TGGTATCTAATATTTATTTATCACAATT
1 TGGTATCTAATATTCA-ATAT-ACAATT
2277995 TGGTATCT
1 TGGTATCT
2278003 GATTTTGTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 15 0.48
27 3 0.10
28 13 0.42
ACGTcount: A:0.31, C:0.11, G:0.10, T:0.48
Consensus pattern (26 bp):
TGGTATCTAATATTCAATATACAATT
Found at i:2291448 original size:156 final size:154
Alignment explanation
Indices: 2291109--2291550 Score: 647
Period size: 156 Copynumber: 2.8 Consensus size: 154
2291099 CCCCTCAATT
2291109 AAGACCGCATAGCGCAGTGGATTAGCGCGTCTGACTTCGGATCAGAAGGTCGTGGGTTCGACTCC
1 AAGACCGCATAGCGCAGTGGATTAGCGCGTCTGACTTCGGATCAGAAGGTCGTGGGTTCGACTCC
* * *
2291174 CACTGTGGTCGTTTTTGTTAACTTTTTGTTTATTCTTTTTTACTGCCGCTATGATGCTAAAATTT
66 CTCTGTGGTCG-TTTTATTAA-TTTTTGTTTATTCTTTTTTACTGCCTCTATGATGCTAAAATTT
**
2291239 GAACTACCTTTTACCGTACATTTCCCC
129 GAACTACCTTTTACCG-ACACATCCCC
*
2291266 AAGACCGCATAGCGCAGTGGATTAGCGCGTCTGACTTCGGATCAGAAGGTCGTTGGTTCGACTCC
1 AAGACCGCATAGCGCAGTGGATTAGCGCGTCTGACTTCGGATCAGAAGGTCGTGGGTTCGACTCC
* * *
2291331 CTCTGTGGTTGTCTTTATTAATTTTTGTTAATTCTTTTTTACTGCCTCTATGTTGCTAAAATTTG
66 CTCTGTGGTCGT-TTTATTAATTTTTGTTTATTCTTTTTTACTGCCTCTATGATGCTAAAATTTG
* *
2291396 AAGTACTTTTTACC-ACACCATCCCGC
130 AACTACCTTTTACCGACA-CATCCC-C
*
2291422 AAGACCGCATAGCGTAGTGGATTAGCGCGTCTGACTTCGGATCAGAAGGTCGTGGGTTCGACTCC
1 AAGACCGCATAGCGCAGTGGATTAGCGCGTCTGACTTCGGATCAGAAGGTCGTGGGTTCGACTCC
* * * **
2291487 CAT-TGTGGTCGTTATATTGATTTTTGTTTATTCTGTTTTGTTG-CTCTATGATGCTAAAATTTG
66 C-TCTGTGGTCGTTTTATTAATTTTTGTTTATTCTTTTTTACTGCCTCTATGATGCTAAAATTTG
2291550 A
130 A
2291551 GCTGCTTTAT
Statistics
Matches: 260, Mismatches: 21, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
154 23 0.09
155 29 0.11
156 127 0.49
157 81 0.31
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (154 bp):
AAGACCGCATAGCGCAGTGGATTAGCGCGTCTGACTTCGGATCAGAAGGTCGTGGGTTCGACTCC
CTCTGTGGTCGTTTTATTAATTTTTGTTTATTCTTTTTTACTGCCTCTATGATGCTAAAATTTGA
ACTACCTTTTACCGACACATCCCC
Found at i:2295284 original size:25 final size:23
Alignment explanation
Indices: 2295239--2295285 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
2295229 TGAAATTTCT
2295239 TGAAAATTTAAAAAAAATATATA
1 TGAAAATTTAAAAAAAATATATA
* *
2295262 TGAAATTTTATAAATAAAT-TATA
1 TGAAAATTTA-AAAAAAATATATA
2295285 T
1 T
2295286 TTAAAAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
TGAAAATTTAAAAAAAATATATA
Found at i:2296277 original size:12 final size:13
Alignment explanation
Indices: 2296250--2296278 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2296240 AATTACTTAT
2296250 TTTTTTAATTTAA
1 TTTTTTAATTTAA
2296263 TTTTTTAATTT-A
1 TTTTTTAATTTAA
2296275 TTTT
1 TTTT
2296279 AAATTTTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTTAATTTAA
Found at i:2300361 original size:39 final size:39
Alignment explanation
Indices: 2300306--2300383 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
2300296 GATTGACGCT
*
2300306 TAAAGTTATCCCCATCATCAAACTATCTAGGTCTTTTAG
1 TAAAGTTATCCCCATCATCAAACTATCTAGGTCTATTAG
*
2300345 TAAAGTTATCCTCATCATCAAACTATCTAGGTCTATTAG
1 TAAAGTTATCCCCATCATCAAACTATCTAGGTCTATTAG
2300384 CTTACTTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.10, T:0.36
Consensus pattern (39 bp):
TAAAGTTATCCCCATCATCAAACTATCTAGGTCTATTAG
Found at i:2302300 original size:7 final size:7
Alignment explanation
Indices: 2302288--2302312 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2302278 ACATGCTGGC
2302288 CTTGCAA
1 CTTGCAA
2302295 CTTGCAA
1 CTTGCAA
2302302 CTTGCAA
1 CTTGCAA
2302309 CTTG
1 CTTG
2302313 TTGTAGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (7 bp):
CTTGCAA
Found at i:2303038 original size:50 final size:50
Alignment explanation
Indices: 2302977--2303077 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
2302967 TTTAAATTTA
2302977 TTTATATTTATAAACGACCAGTCCAAACTTGTTTTAAATTTGTGCATAAT
1 TTTATATTTATAAACGACCAGTCCAAACTTGTTTTAAATTTGTGCATAAT
** *
2303027 TTTATATTTATAAATTATCAGTCCAAACTTGTTTTAAATTTGTGCATAAT
1 TTTATATTTATAAACGACCAGTCCAAACTTGTTTTAAATTTGTGCATAAT
2303077 T
1 T
2303078 ACATAATATA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.46
Consensus pattern (50 bp):
TTTATATTTATAAACGACCAGTCCAAACTTGTTTTAAATTTGTGCATAAT
Found at i:2313947 original size:20 final size:21
Alignment explanation
Indices: 2313922--2313974 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
2313912 AAAATATAAT
*
2313922 TTTTGAAATTTTT-ATAAA-TA
1 TTTTGAACTTTTTGA-AAATTA
2313942 TTTTG-ACTTTTTGAAAATTA
1 TTTTGAACTTTTTGAAAATTA
2313962 TTTTGAACTTTTT
1 TTTTGAACTTTTT
2313975 TTTTTTTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 9 0.31
20 13 0.45
21 7 0.24
ACGTcount: A:0.30, C:0.04, G:0.08, T:0.58
Consensus pattern (21 bp):
TTTTGAACTTTTTGAAAATTA
Found at i:2325719 original size:25 final size:26
Alignment explanation
Indices: 2325669--2325720 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
2325659 AGAAGCCTCT
* *
2325669 ACAGTCTTCTAATCAAGTCTATCTCA
1 ACAGTCATCTAATCAAGTCTAGCTCA
*
2325695 ACAGTCATC-AATCAAGTCTCGCTCA
1 ACAGTCATCTAATCAAGTCTAGCTCA
2325720 A
1 A
2325721 GAAGACAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.29
Consensus pattern (26 bp):
ACAGTCATCTAATCAAGTCTAGCTCA
Found at i:2333738 original size:164 final size:163
Alignment explanation
Indices: 2333453--2333764 Score: 500
Period size: 164 Copynumber: 1.9 Consensus size: 163
2333443 ACATGACCGT
** *
2333453 CAGGAACAGTGAGAGCAGCAGCAATGGAAAGTTCATATCAAAGAAAAATGAATTCCATATACAGT
1 CAGGAACAGTGAGAGCAGCAGCAACAGAAAGTTCATATCAAAGAAAAATGAAATCCATATACAGT
* *
2333518 AAGTATAATCATAATTAAAAATGAAATCCATATATGCTTTTTCAAATGATCAAACCTCAATAAAA
66 AAGTATAATCATAATTAAAAATGAAATCCATATACGCTTTTTCAAATGACCAAACCTCAATAAAA
*
2333583 GGGAAAAAGATTTAATCTTAAACTGGAAGTGCAA
131 GGGAAAAA-AATTAATCTTAAACTGGAAGTGCAA
* **
2333617 CAGGAACAGTGAGAGCAGCAGCAACAGAAAGTTCATATCAGAA-AAAACTGAAATCCATATATGG
1 CAGGAACAGTGAGAGCAGCAGCAACAGAAAGTTCATATCA-AAGAAAAATGAAATCCATATACAG
**
2333681 TAAGTATAATCATAATTAAAAATGAAATCCATATACGCTTTTTTGAATGACCAAACCTCAATAAA
65 TAAGTATAATCATAATTAAAAATGAAATCCATATACGCTTTTTCAAATGACCAAACCTCAATAAA
2333746 AGGGAAAAAAATTAATCTT
130 AGGGAAAAAAATTAATCTT
2333765 GAATTAAAAT
Statistics
Matches: 136, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
163 9 0.07
164 125 0.92
165 2 0.01
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.24
Consensus pattern (163 bp):
CAGGAACAGTGAGAGCAGCAGCAACAGAAAGTTCATATCAAAGAAAAATGAAATCCATATACAGT
AAGTATAATCATAATTAAAAATGAAATCCATATACGCTTTTTCAAATGACCAAACCTCAATAAAA
GGGAAAAAAATTAATCTTAAACTGGAAGTGCAA
Found at i:2343598 original size:15 final size:15
Alignment explanation
Indices: 2343580--2343617 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
2343570 TCAAAATCGA
2343580 TATTTTTATAACATT
1 TATTTTTATAACATT
*
2343595 TATTTTTATAATATT
1 TATTTTTATAACATT
*
2343610 TTTTTTTA
1 TATTTTTA
2343618 ATTTTCACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTTTTATAACATT
Found at i:2343717 original size:3 final size:3
Alignment explanation
Indices: 2343709--2343734 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
2343699 TACAAAGTAA
2343709 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
2343735 CAATAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:2343971 original size:16 final size:16
Alignment explanation
Indices: 2343950--2343988 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2343940 CCTAAACTCG
**
2343950 AAATGATTAAAATTCA
1 AAATGATTAAAACGCA
*
2343966 AAATGATTCAAACGCA
1 AAATGATTAAAACGCA
2343982 AAATGAT
1 AAATGAT
2343989 CTGAACAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.54, C:0.10, G:0.10, T:0.26
Consensus pattern (16 bp):
AAATGATTAAAACGCA
Found at i:2351692 original size:3 final size:3
Alignment explanation
Indices: 2351684--2351716 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
2351674 CCATCATGGA
*
2351684 GAT GAT GAT GGT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
2351717 TGGTTCAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:2351699 original size:12 final size:12
Alignment explanation
Indices: 2351679--2351716 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
2351669 AGAACCCATC
*
2351679 ATGGAGATGATG
1 ATGGTGATGATG
2351691 ATGGTGATGATG
1 ATGGTGATGATG
*
2351703 ATGATGATGATG
1 ATGGTGATGATG
2351715 AT
1 AT
2351717 TGGTTCAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.32, C:0.00, G:0.37, T:0.32
Consensus pattern (12 bp):
ATGGTGATGATG
Found at i:2353063 original size:24 final size:24
Alignment explanation
Indices: 2353031--2353081 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
2353021 TATAGGTTCA
2353031 CTTGAACTTG-TCATCTCTAAGAGT
1 CTTGAACTTGCT-ATCTCTAAGAGT
*
2353055 CTTGAACTTGCTATCTCTTAGAGT
1 CTTGAACTTGCTATCTCTAAGAGT
2353079 CTT
1 CTT
2353082 CAACAATTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (24 bp):
CTTGAACTTGCTATCTCTAAGAGT
Found at i:2366211 original size:20 final size:21
Alignment explanation
Indices: 2366186--2366227 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
2366176 AGAGTGAAAT
2366186 ATGACAATAAGCAA-CAAAAC
1 ATGACAATAAGCAACCAAAAC
2366206 ATGACAATAAGCAACCAAAAC
1 ATGACAATAAGCAACCAAAAC
2366227 A
1 A
2366228 AATTACTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.60, C:0.21, G:0.10, T:0.10
Consensus pattern (21 bp):
ATGACAATAAGCAACCAAAAC
Found at i:2366739 original size:26 final size:26
Alignment explanation
Indices: 2366699--2366838 Score: 117
Period size: 26 Copynumber: 5.5 Consensus size: 26
2366689 TCGACTTACT
* *
2366699 TATGCGTTCATGCTCGTTAGCTTGTA
1 TATGCGTTTACGCTCGTTAGCTTGTA
* * *
2366725 TATGCGTTTACGCTCGTCAACTTGCA
1 TATGCGTTTACGCTCGTTAGCTTGTA
* * * * *
2366751 CA--CGTTTATGCTTGTTAGCTTATT
1 TATGCGTTTACGCTCGTTAGCTTGTA
* *
2366775 TATGCGTTTACGCTCGCTAGCTTGCA
1 TATGCGTTTACGCTCGTTAGCTTGTA
* * *
2366801 CA--CGTTTACGCTCGTCAGCTTGTT
1 TATGCGTTTACGCTCGTTAGCTTGTA
2366825 TATGCGTTTACGCT
1 TATGCGTTTACGCT
2366839 TGCCAGCTTG
Statistics
Matches: 84, Mismatches: 26, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
24 35 0.42
26 49 0.58
ACGTcount: A:0.16, C:0.24, G:0.21, T:0.40
Consensus pattern (26 bp):
TATGCGTTTACGCTCGTTAGCTTGTA
Found at i:2366845 original size:26 final size:26
Alignment explanation
Indices: 2366767--2366848 Score: 87
Period size: 26 Copynumber: 3.2 Consensus size: 26
2366757 TATGCTTGTT
* *
2366767 AGCTTATTTATGCGTTTACGCTCGCT
1 AGCTTGTTTATGCGTTTACGCTCGCC
* ** *
2366793 AGCTTG--CACACGTTTACGCTCGTC
1 AGCTTGTTTATGCGTTTACGCTCGCC
*
2366817 AGCTTGTTTATGCGTTTACGCTTGCC
1 AGCTTGTTTATGCGTTTACGCTCGCC
2366843 AGCTTG
1 AGCTTG
2366849 CACTATATAT
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
24 19 0.44
26 24 0.56
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.38
Consensus pattern (26 bp):
AGCTTGTTTATGCGTTTACGCTCGCC
Found at i:2366847 original size:50 final size:50
Alignment explanation
Indices: 2366710--2366851 Score: 203
Period size: 50 Copynumber: 2.8 Consensus size: 50
2366700 ATGCGTTCAT
* * * *
2366710 GCTCGTTAGCTTGTATATGCGTTTACGCTCGTCAACTTGCACACGTTTAT
1 GCTCGTTAGCTTGTTTATGCGTTTACGCTCGCCAGCTTGCACACGTTTAC
* * *
2366760 GCTTGTTAGCTTATTTATGCGTTTACGCTCGCTAGCTTGCACACGTTTAC
1 GCTCGTTAGCTTGTTTATGCGTTTACGCTCGCCAGCTTGCACACGTTTAC
* *
2366810 GCTCGTCAGCTTGTTTATGCGTTTACGCTTGCCAGCTTGCAC
1 GCTCGTTAGCTTGTTTATGCGTTTACGCTCGCCAGCTTGCAC
2366852 TATATATATG
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 80 1.00
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.38
Consensus pattern (50 bp):
GCTCGTTAGCTTGTTTATGCGTTTACGCTCGCCAGCTTGCACACGTTTAC
Found at i:2372084 original size:21 final size:21
Alignment explanation
Indices: 2372008--2372880 Score: 631
Period size: 21 Copynumber: 40.5 Consensus size: 21
2371998 CTAAGTCAAT
* *
2372008 ACCACCACCAGTACACTCCCC
1 ACCACCACCAGTCCACTCACC
* *
2372029 ACC-CCTACAAGTGCACTCACC
1 ACCACC-ACCAGTCCACTCACC
* * *
2372050 ACCTCAATCCA-TCCATTCACC
1 ACCACCA-CCAGTCCACTCACC
* *
2372071 ACCACCACCAATCCACTCTCC
1 ACCACCACCAGTCCACTCACC
* *
2372092 ACCCCCACCAGTGCACTCACC
1 ACCACCACCAGTCCACTCACC
*
2372113 ACCACCACCCGTCCACTCACC
1 ACCACCACCAGTCCACTCACC
* *
2372134 ACCACCACCTGTCCACTCCCC
1 ACCACCACCAGTCCACTCACC
* *
2372155 ACCTCCACCAGTGCACTCACC
1 ACCACCACCAGTCCACTCACC
* *
2372176 ACCCCCACCAGTACACTCACC
1 ACCACCACCAGTCCACTCACC
* *
2372197 ACCACCACCCGTCTACTCACC
1 ACCACCACCAGTCCACTCACC
* *
2372218 ACTACCACCA--CCAC-CACA
1 ACCACCACCAGTCCACTCACC
* *
2372236 AGTCCACTC-CTCACCTCCACCAGTGTACTC
1 A--CCAC-CAC-CA-GTCCA-C--T-CAC-C
2372266 ACCACCACCA--CCATCAATCCACTC
1 ACCACCACCAGTCCA-C--T-CAC-C
* *
2372290 CCCACCTCTACCAGTGCACTCACC
1 ACCA-C-C-ACCAGTCCACTCACC
* * *
2372314 ACCACCTCCCGTCTACTCACC
1 ACCACCACCAGTCCACTCACC
* *
2372335 ACCACCACCATCGATCCATTCTCC
1 ACCACCACCA--G-TCCACTCACC
* * *
2372359 ACCCCCACCCGTCTACTCACC
1 ACCACCACCAGTCCACTCACC
*
2372380 ACCACCACCAGTCCACTCTCC
1 ACCACCACCAGTCCACTCACC
* * *
2372401 ACCCCCACCCGTCTACTCACC
1 ACCACCACCAGTCCACTCACC
* **
2372422 ACCACCACC-GATTCACTTTCC
1 ACCACCACCAG-TCCACTCACC
* *
2372443 ACCCCCACCCGTCCACTCACC
1 ACCACCACCAGTCCACTCACC
*
2372464 ACCACCACCAGTCCACTCTCC
1 ACCACCACCAGTCCACTCACC
**
2372485 ACCACCACCAGTGAACTCACC
1 ACCACCACCAGTCCACTCACC
* * *
2372506 ACCCCCACCCGTCTACTCACC
1 ACCACCACCAGTCCACTCACC
* *
2372527 ACCACCACCGGTTCACTTC-CC
1 ACCACCACCAGTCCAC-TCACC
* *
2372548 ACCCCCACCCGTCCACTCACC
1 ACCACCACCAGTCCACTCACC
*
2372569 ACCACCACCCA-TCTACTCACC
1 ACCACCA-CCAGTCCACTCACC
* *
2372590 ACCACCACCAATCCAGTCACC
1 ACCACCACCAGTCCACTCACC
*
2372611 ACCACCACCGGTCCACTCACC
1 ACCACCACCAGTCCACTCACC
*
2372632 ACCACCACCACCCGCCCACTCACC
1 ACCACCACCA---GTCCACTCACC
*
2372656 ACCACCACCAGTGCACTCACC
1 ACCACCACCAGTCCACTCACC
* *
2372677 ACCCCCACTC-GTCTACTCACC
1 ACCACCAC-CAGTCCACTCACC
*
2372698 ACCACCACCCA-TCTACTCACC
1 ACCACCA-CCAGTCCACTCACC
* *
2372719 ACCACCACCAATCCAGTCACC
1 ACCACCACCAGTCCACTCACC
*
2372740 ACCACCACCGGTCCACTCACC
1 ACCACCACCAGTCCACTCACC
*
2372761 ACCACCACCACCCGCCCACTCACC
1 ACCACCACCA---GTCCACTCACC
*
2372785 ACCACCACCAGTGCACTCACC
1 ACCACCACCAGTCCACTCACC
* *
2372806 ACC-CCACCCGTCTACTCACC
1 ACCACCACCAGTCCACTCACC
* *
2372826 ACCACCACCATCAATCCACTCTCC
1 ACCACCA-C--CAGTCCACTCACC
* * * *
2372850 ACCCCCACCAGTACAATCTCC
1 ACCACCACCAGTCCACTCACC
*
2372871 ACCTCCACCA
1 ACCACCACCA
2372881 ATTCCATCTC
Statistics
Matches: 677, Mismatches: 129, Indels: 92
0.75 0.14 0.10
Matches are distributed among these distances:
18 4 0.01
19 3 0.00
20 35 0.05
21 504 0.74
22 13 0.02
23 3 0.00
24 90 0.13
25 5 0.01
26 2 0.00
27 7 0.01
28 6 0.01
29 4 0.01
30 1 0.00
ACGTcount: A:0.25, C:0.56, G:0.05, T:0.13
Consensus pattern (21 bp):
ACCACCACCAGTCCACTCACC
Found at i:2372256 original size:51 final size:51
Alignment explanation
Indices: 2372172--2372278 Score: 135
Period size: 51 Copynumber: 2.1 Consensus size: 51
2372162 CCAGTGCACT
* * * *
2372172 CACCACCCCCACCAGTACACTCACCACCACCACCCGTCTACTCACCACTAC
1 CACCACCACCACAAGTACACTCACCACCACCACCAGTCTACTCACCACCAC
* * *
2372223 CACCACCACCACAAGTCCACTC-CTCACCTCCACCAGTGTACTCACCACCAC
1 CACCACCACCACAAGTACACTCAC-CACCACCACCAGTCTACTCACCACCAC
2372274 CACCA
1 CACCA
2372279 TCAATCCACT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 1 0.02
51 47 0.98
ACGTcount: A:0.28, C:0.55, G:0.05, T:0.12
Consensus pattern (51 bp):
CACCACCACCACAAGTACACTCACCACCACCACCAGTCTACTCACCACCAC
Found at i:2372256 original size:72 final size:70
Alignment explanation
Indices: 2372146--2372535 Score: 209
Period size: 66 Copynumber: 5.9 Consensus size: 70
2372136 CACCACCTGT
* * *
2372146 CCACTCCCCACCTCCACCAGTGCACTCACCACCCCCACCAGTACACTCACCACCACCACCCGTCT
1 CCACTCCCCACCACCACAAGTCCACTCACCACCCCCACCAGTACACTCACCACCACCACCCGTCT
2372211 ACTCA
66 ACTCA
* ** *
2372216 CCACTACCACCACCACCACAAGTCCACTC-CTCACCTCCACCAGTGTACTCACCACCACCA-CCA
1 CCACT-CC-CCACCACCACAAGTCCACTCAC-CACCCCCACCAGTACACTCACCACCACCACCCG
*
2372279 TC-AAT--
63 TCTACTCA
* * * * * * * *
2372284 CCACTCCCCACCTCTACCAGTGCACTCACCACCACCTCCCGT-CTACTCACCACCACCA-CCATC
1 CCACTCCCCACCACCACAAGTCCACTCACCACCCCCACCAGTAC-ACTCACCACCACCACCCGTC
*
2372347 GA-T--
65 TACTCA
* * * ** * * * * *
2372350 CCATTCTCCACCCCCACCCGTCTACTCACCACCACCACCAGTCCACTCTCCACCCCCACCCGTCT
1 CCACTCCCCACCACCACAAGTCCACTCACCACCCCCACCAGTACACTCACCACCACCACCCGTCT
2372415 ACTCA
66 ACTCA
* * ** * *
2372420 CCA----CCACCA-C-CGA-TTCACTTTCCACCCCCACCCGTCCACTCACCACCACCA--C--C-
1 CCACTCCCCACCACCACAAGTCCACTCACCACCCCCACCAGTACACTCACCACCACCACCCGTCT
*
2372473 AGT--
66 ACTCA
* * ** *
2372476 CCACTCTCCACCACCACCAGTGAACTCACCACCCCCACCCGT-CTACTCACCACCACCACC
1 CCACTCCCCACCACCACAAGTCCACTCACCACCCCCACCAGTAC-ACTCACCACCACCACC
2372536 GGTTCACTTC
Statistics
Matches: 253, Mismatches: 46, Indels: 47
0.73 0.13 0.14
Matches are distributed among these distances:
56 3 0.01
58 2 0.01
59 1 0.00
60 6 0.02
61 2 0.01
62 3 0.01
63 62 0.25
64 1 0.00
65 1 0.00
66 96 0.38
67 10 0.04
68 6 0.02
70 10 0.04
71 7 0.03
72 43 0.17
ACGTcount: A:0.24, C:0.56, G:0.05, T:0.15
Consensus pattern (70 bp):
CCACTCCCCACCACCACAAGTCCACTCACCACCCCCACCAGTACACTCACCACCACCACCCGTCT
ACTCA
Found at i:2372889 original size:21 final size:21
Alignment explanation
Indices: 2372827--2372897 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
2372817 CTACTCACCA
* *
2372827 CCACCACCATCAA-TCCACTCT
1 CCACCTCCACCAATTCCA-TCT
* * * *
2372848 CCACCCCCACCAGTACAATCT
1 CCACCTCCACCAATTCCATCT
2372869 CCACCTCCACCAATTCCATCT
1 CCACCTCCACCAATTCCATCT
*
2372890 CCTCCTCC
1 CCACCTCC
2372898 TGTTGTGTCT
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
21 37 0.95
22 2 0.05
ACGTcount: A:0.24, C:0.55, G:0.01, T:0.20
Consensus pattern (21 bp):
CCACCTCCACCAATTCCATCT
Found at i:2373945 original size:23 final size:24
Alignment explanation
Indices: 2373898--2373953 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
2373888 CAATAAATTT
2373898 CCCAAA-AATTATCATTTATCCAAA
1 CCCAAACAATTATCATTTAT-CAAA
2373922 CCCAAACAA-TATCATTATAT-AAA
1 CCCAAACAATTATCATT-TATCAAA
2373945 CCCAAACAA
1 CCCAAACAA
2373954 AAAATTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 12 0.40
24 13 0.43
25 5 0.17
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (24 bp):
CCCAAACAATTATCATTTATCAAA
Found at i:2379316 original size:21 final size:21
Alignment explanation
Indices: 2379279--2379328 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
2379269 CTAAGTCAAT
* *
2379279 ACCACCACCAGTCCACTCCCC
1 ACCACCACAAGTCCACTCACC
* *
2379300 ACCCCCACAAGTGCACTCACC
1 ACCACCACAAGTCCACTCACC
2379321 ACCACCAC
1 ACCACCAC
2379329 CACTACCAGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.58, G:0.06, T:0.08
Consensus pattern (21 bp):
ACCACCACAAGTCCACTCACC
Found at i:2379351 original size:48 final size:48
Alignment explanation
Indices: 2379279--2379373 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
2379269 CTAAGTCAAT
2379279 ACCACCACCAGTCCACTCCCCACCCCCA-CAAGTGCACTCACCACCACC
1 ACCACCACCAGTCCACTCCCCACCCCCATC-AGTGCACTCACCACCACC
* * * *
2379327 ACCACTACCAGTTCACTCCTCACCCCCATCAGTGCATTCACCACCAC
1 ACCACCACCAGTCCACTCCCCACCCCCATCAGTGCACTCACCACCAC
2379374 AACTCATCCA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
48 41 0.98
49 1 0.02
ACGTcount: A:0.26, C:0.54, G:0.06, T:0.14
Consensus pattern (48 bp):
ACCACCACCAGTCCACTCCCCACCCCCATCAGTGCACTCACCACCACC
Found at i:2379411 original size:21 final size:21
Alignment explanation
Indices: 2379387--2379530 Score: 83
Period size: 21 Copynumber: 6.4 Consensus size: 21
2379377 TCATCCATTT
2379387 ACCACCACCTGTACACTCACC
1 ACCACCACCTGTACACTCACC
*
2379408 ACCACCACCCGTTTACTCACCATCACC
1 ACCACCA-CC-TGTA--CA-C-TCACC
** * *
2379435 ACCACCACAAGTCCACTCCCC
1 ACCACCACCTGTACACTCACC
* *
2379456 ACCCCCACCAGTACACTCACC
1 ACCACCACCTGTACACTCACC
* *
2379477 ACCCCCATCCGTCTACTCAC-CACC
1 ACCACCA-CC-TGTA--CACTCACC
* **
2379501 ACCACCACCCGTTTACTCACC
1 ACCACCACCTGTACACTCACC
2379522 ACCACCACC
1 ACCACCACC
2379531 ACCACCACAA
Statistics
Matches: 95, Mismatches: 17, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
20 2 0.02
21 48 0.51
22 6 0.06
23 9 0.09
24 10 0.11
25 6 0.06
26 2 0.02
27 12 0.13
ACGTcount: A:0.26, C:0.56, G:0.04, T:0.14
Consensus pattern (21 bp):
ACCACCACCTGTACACTCACC
Found at i:2379452 original size:108 final size:108
Alignment explanation
Indices: 2379278--2379479 Score: 260
Period size: 108 Copynumber: 1.9 Consensus size: 108
2379268 CCTAAGTCAA
* * * * * *
2379278 TACCACCACCAGTCCACTCCCCACCCCCACAAGTGCACTCACCACCACCACCACTACCAGTTCAC
1 TACCACCACCAGTACACTCACCACCACCACAAGTGCACTCACCACCACCACCACCACAAGTCCAC
* * * *
2379343 TCCTCACCCCCATCAGTGCATTCACCACCACAACTCATCCATT
66 TCCCCACCCCCACCAGTACACTCACCACCACAACTCATCCATT
* ** ** *
2379386 TACCACCACCTGTACACTCACCACCACCACCCGTTTACTCACCATCACCACCACCACAAGTCCAC
1 TACCACCACCAGTACACTCACCACCACCACAAGTGCACTCACCACCACCACCACCACAAGTCCAC
2379451 TCCCCACCCCCACCAGTACACTCACCACC
66 TCCCCACCCCCACCAGTACACTCACCACC
2379480 CCCATCCGTC
Statistics
Matches: 78, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
108 78 1.00
ACGTcount: A:0.27, C:0.52, G:0.05, T:0.15
Consensus pattern (108 bp):
TACCACCACCAGTACACTCACCACCACCACAAGTGCACTCACCACCACCACCACCACAAGTCCAC
TCCCCACCCCCACCAGTACACTCACCACCACAACTCATCCATT
Found at i:2379524 original size:3 final size:3
Alignment explanation
Indices: 2379518--2379692 Score: 80
Period size: 3 Copynumber: 52.3 Consensus size: 3
2379508 CCCGTTTACT
* * * *
2379518 CAC CAC CAC CAC CAC CAC CAC AAGTC CAC TCCC CAC CCC CAC CAATG
1 CAC CAC CAC CAC CAC CAC CAC CA--C CAC -CAC CAC CAC CAC C-A-C
* *
2379565 CAC TCAC CAC CCC CACC CATC TAC TCAC CAC CAC CAC CAC CAC CAC CAC
1 CAC -CAC CAC CAC CA-C CA-C CAC -CAC CAC CAC CAC CAC CAC CAC CAC
* * * * *
2379614 CAC CAC CAC AAGTC CAC TCCC CAC CCC CAC CAATG CAC TCAC CAC CCC
1 CAC CAC CAC CA--C CAC -CAC CAC CAC CAC C-A-C CAC -CAC CAC CAC
*
2379662 CACC CATC TAC TCAC CAC CAC CAC CAC CAC C
1 CA-C CA-C CAC -CAC CAC CAC CAC CAC CAC C
2379693 GGTCCACTCC
Statistics
Matches: 130, Mismatches: 26, Indels: 32
0.69 0.14 0.17
Matches are distributed among these distances:
3 96 0.74
4 28 0.22
5 6 0.05
ACGTcount: A:0.29, C:0.61, G:0.02, T:0.08
Consensus pattern (3 bp):
CAC
Found at i:2379527 original size:69 final size:68
Alignment explanation
Indices: 2379387--2380043 Score: 206
Period size: 69 Copynumber: 9.8 Consensus size: 68
2379377 TCATCCATTT
* * *
2379387 ACCACCACCTGTACACTCACCACCACCACCCGTTTACTCACCATCACCACCACCACAAGTCCACT
1 ACCACCACCAGTACACTCACCACCACCACCCGTCTACTCACCACCACCACCACCAC-AGTCCACT
2379452 CCCC
65 CCCC
* * *
2379456 ACCCCCACCAGTACACTCACCACCCCCATCCGTCTACTCACCACCACCACCACC-C-GTTTACTC
1 ACCACCACCAGTACACTCACCACCACCACCCGTCTACTCACCACCACCACCACCACAG--T-C-C
*
2379519 ACCACCACC
62 A-CTCC-CC
* * * ** *
2379528 ACCACCACCACAAGTCCACTCCCCACCCCCACCAATGC-ACTCACCA-C-CC-CCACC-CA-TCT
1 ACCACCA-C-C-AGTACACTCACCACCACCACCCGT-CTACTCACCACCACCACCACCACAGTCC
*
2379587 ACTCACC
62 ACTCCCC
** ** * * *
2379594 ACCACCACCACCACCAC-CACCACCACCACAAGTCCACT--CC-CCACCCCCACCA-A-TGCACT
1 ACCACCACCAGTA-CACTCACCACCACCACCCGTCTACTCACCACCACCACCACCACAGTCCACT
*
2379653 CACC
65 CCCC
* * *
2379657 ACCCCCACCCA-T-CTACTCACCACCACCACCAC--C-AC-CGGTCCACTC-CTCACCCCCACCA
1 ACCACCA-CCAGTAC-ACTCACCACCACCACC-CGTCTACTC--ACCAC-CAC-CACCACCA-CA
* *
2379715 GTGCATTCCCC
58 GTCCACTCCCC
* ** * *
2379726 ACCCCCACCCCT-CTACTCACCACCACCACCACAAGTCCACTTC-CCA-C-CC-CCA-C-CAGTG
1 ACCACCACCAGTAC-ACTCACCACCACCACC-C--GTCTAC-TCACCACCACCACCACCACAGTC
*
2379784 CACTCCTC
61 CACTCCCC
* * * * * *
2379792 ACCTCCACCCGTCTACTCTCCACCACCACCACCAC--CTA-TGA--ACTCACCACCCCCACCTGT
1 ACCACCACCAG--TACACT-CACCACCACCACC-CGTCTACTCACCAC-CACCACCACCA-CAGT
*
2379852 CCACTCACC
60 CCACTCCCC
* * * *
2379861 ACCACCACC-GATCCACTCACCACCCCCACCCGTCTACTCACCACCACCACCATCACCAGTTCAC
1 ACCACCACCAG-TACACTCACCACCACCACCCGTCTACTCACCACCACCACCACCA-CAGTCCAC
*
2379925 TTCCC
64 TCCCC
* * * * * * * *
2379930 ACCCCCACCAGTGCACTCCCCACCCCCACCCGTC--C-AATCACCACCTCCAGC-C-GTCCACTC
1 ACCACCACCAGTACACTCACCACCACCACCCGTCTACTCACCACCACCACCACCACAGTCCACTC
*
2379990 ACC
66 CCC
* * * *
2379993 ACCACCAGCC-GTCCACTCACCACCCCCTCCCGTCCACTCACCACCACCACC
1 ACCACCA-CCAGTACACTCACCACCACCACCCGTCTACTCACCACCACCACC
2380044 GTCGGTCTAC
Statistics
Matches: 451, Mismatches: 76, Indels: 125
0.69 0.12 0.19
Matches are distributed among these distances:
61 6 0.01
62 7 0.02
63 84 0.19
64 13 0.03
65 9 0.02
66 73 0.16
67 11 0.02
68 13 0.03
69 169 0.37
70 7 0.02
71 5 0.01
72 14 0.03
73 7 0.02
74 4 0.01
75 27 0.06
76 2 0.00
ACGTcount: A:0.25, C:0.58, G:0.05, T:0.12
Consensus pattern (68 bp):
ACCACCACCAGTACACTCACCACCACCACCCGTCTACTCACCACCACCACCACCACAGTCCACTC
CCC
Found at i:2379543 original size:96 final size:96
Alignment explanation
Indices: 2379404--2379689 Score: 422
Period size: 84 Copynumber: 3.1 Consensus size: 96
2379394 CCTGTACACT
*
2379404 CACCACCACCACCCGTTTACT---CACCATCACCACCACCACAAGTCCACTCCCCACCCCCACCA
1 CACCACCACCACCCGTTTACTCACCACCACCACCACCACCACAAGTCCACTCCCCACCCCCACCA
* * * *
2379466 GTACACTCACCACCCCCATCCGTCTACTCAC
66 ATGCACTCACCACCCCCACCCATCTACTCAC
2379497 CACCACCACCACCCGTTTACTCACCACCACCACCACCACCACAAGTCCACTCCCCACCCCCACCA
1 CACCACCACCACCCGTTTACTCACCACCACCACCACCACCACAAGTCCACTCCCCACCCCCACCA
2379562 ATGCACTCACCACCCCCACCCATCTACT---
66 ATGCACTCACCACCCCCACCCATCTACTCAC
2379590 ---CACCACCA-CC----AC-CACCACCACCACCACCACCACAAGTCCACTCCCCACCCCCACCA
1 CACCACCACCACCCGTTTACTCACCACCACCACCACCACCACAAGTCCACTCCCCACCCCCACCA
2379646 ATGCACTCACCACCCCCACCCATCTACTCAC
66 ATGCACTCACCACCCCCACCCATCTACTCAC
2379677 CACCACCACCACC
1 CACCACCACCACC
2379690 ACCGGTCCAC
Statistics
Matches: 178, Mismatches: 5, Indels: 22
0.87 0.02 0.11
Matches are distributed among these distances:
84 72 0.40
85 2 0.01
89 2 0.01
90 16 0.09
91 1 0.01
93 21 0.12
96 64 0.36
ACGTcount: A:0.27, C:0.59, G:0.03, T:0.11
Consensus pattern (96 bp):
CACCACCACCACCCGTTTACTCACCACCACCACCACCACCACAAGTCCACTCCCCACCCCCACCA
ATGCACTCACCACCCCCACCCATCTACTCAC
Found at i:2379559 original size:21 final size:21
Alignment explanation
Indices: 2379529--2380193 Score: 262
Period size: 21 Copynumber: 30.7 Consensus size: 21
2379519 ACCACCACCA
* *
2379529 CCACCACCACAAGTCCACTCC
1 CCACCCCCACCAGTCCACTCC
* * *
2379550 CCACCCCCACCAATGCACTCA
1 CCACCCCCACCAGTCCACTCC
* *
2379571 CCACCCCCACCCA-TCTACTCA
1 CCACCCCCA-CCAGTCCACTCC
* *
2379592 CCACCACCACCA--CCACCACC
1 CCACCCCCACCAGTCCA-CTCC
* *
2379612 ACCACCACCACAAGTCCACTCC
1 -CCACCCCCACCAGTCCACTCC
* * *
2379634 CCACCCCCACCAATGCACTCA
1 CCACCCCCACCAGTCCACTCC
*
2379655 CCACCCCCACCCA-TCTACTCACC
1 CCACCCCCA-CCAGTCCACT--CC
*
2379678 ACCACCACCACCACCGGTCCACTCC
1 -CCA-C-CC-CCACCAGTCCACTCC
* * *
2379703 TCACCCCCACCAGTGCATTCC
1 CCACCCCCACCAGTCCACTCC
** *
2379724 CCACCCCCACCCCTCTACTCACC
1 CCACCCCCACCAGTCCACT--CC
* * *
2379747 ACCACCACCACAAGTCCACTTC
1 -CCACCCCCACCAGTCCACTCC
*
2379769 CCACCCCCACCAGTGCACTCC
1 CCACCCCCACCAGTCCACTCC
* * * *
2379790 TCACCTCCACCCGTCTACTCTCC
1 CCACCCCCACCAGTC--CACTCC
** *
2379813 ACCACCACCACCACCTA-TGAACTCA
1 -CCA-C-CC-CCACC-AGTCCACTCC
* *
2379838 CCACCCCCACCTGTCCACTCA
1 CCACCCCCACCAGTCCACTCC
* *
2379859 CCACCACCACC-GATCCACTCA
1 CCACCCCCACCAG-TCCACTCC
* *
2379880 CCACCCCCACCCGTCTACTCACC
1 CCACCCCCACCAGTCCACT--CC
* *
2379903 ACCACCACCATCACCAGTTCACTTC
1 -CCACC-CC--CACCAGTCCACTCC
*
2379928 CCACCCCCACCAGTGCACTCC
1 CCACCCCCACCAGTCCACTCC
* * *
2379949 CCACCCCCACCCGTCCAATCA
1 CCACCCCCACCAGTCCACTCC
* *
2379970 CCACCTCCAGCC-GTCCACTCA
1 CCACCCCCA-CCAGTCCACTCC
* *
2379991 CCACCACCAGCC-GTCCACTCA
1 CCACCCCCA-CCAGTCCACTCC
* * *
2380012 CCACCCCCTCCCGTCCACTCA
1 CCACCCCCACCAGTCCACTCC
* *
2380033 CCACCACCACC-GTCGGTCTACTCA
1 CCACCCCCACCAGTC---C-ACTCC
* *
2380057 CCACCCCCTCCCGTCCACTCC
1 CCACCCCCACCAGTCCACTCC
* *
2380078 CCACCACCACCACCAGTGCACTCA
1 CCA-C-CC-CCACCAGTCCACTCC
* *
2380102 CCACCCCCACC-G--AACTAC
1 CCACCCCCACCAGTCCACTCC
* * *
2380120 TCACCACCACCA--CCAC-CA
1 CCACCCCCACCAGTCCACTCC
* *
2380138 CCACCACCACTAGTCCACTCC
1 CCACCCCCACCAGTCCACTCC
* * * * *
2380159 TCACCCCCACTAGTACAATCT
1 CCACCCCCACCAGTCCACTCC
*
2380180 CCACCTCCACCAGT
1 CCACCCCCACCAGT
2380194 TCTATCTCCT
Statistics
Matches: 492, Mismatches: 105, Indels: 94
0.71 0.15 0.14
Matches are distributed among these distances:
18 22 0.04
19 4 0.01
20 16 0.03
21 306 0.62
22 21 0.04
23 20 0.04
24 62 0.13
25 13 0.03
26 5 0.01
27 23 0.05
ACGTcount: A:0.24, C:0.58, G:0.05, T:0.12
Consensus pattern (21 bp):
CCACCCCCACCAGTCCACTCC
Found at i:2379701 original size:27 final size:27
Alignment explanation
Indices: 2379653--2379714 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
2379643 CCAATGCACT
* *
2379653 CACCACCCCCACCCATCTACTCAC-CAC
1 CACCACCACCACCCATCCACTC-CTCAC
**
2379680 CACCACCACCACCGGTCCACTCCTCAC
1 CACCACCACCACCCATCCACTCCTCAC
*
2379707 CCCCACCA
1 CACCACCA
2379715 GTGCATTCCC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.24, C:0.63, G:0.03, T:0.10
Consensus pattern (27 bp):
CACCACCACCACCCATCCACTCCTCAC
Found at i:2379909 original size:90 final size:88
Alignment explanation
Indices: 2379550--2380145 Score: 373
Period size: 90 Copynumber: 6.8 Consensus size: 88
2379540 AGTCCACTCC
* * * * *
2379550 CCACCCCCACCAATGCACTCACCACCCCCACCCATCTACTCACCACCACCACC-ACCAC-CACCA
1 CCACCACCACCAGTGCACTCACCACCCCCA-CCGTCCACTCACCACCACCACCGTCCACTCACCA
*
2379613 CCACCACCACAAGTCCACT--CC-CCA
65 CCCCCACC-C--GTCCACTCACCACCA
* * *
2379637 -C-CC-CCACCAATGCACTCACCACCCCCACCCATCTACTCACCACCACCACCACCACCGGTCCA
1 CCACCACCACCAGTGCACTCACCACCCCCA-CC--GT-C-CA-C-TCACCACCACCACC-GTCCA
* * * * *
2379699 CTC-CTCACCCCCACCAGTGCATTCCCCACCC
58 CTCAC-CACCCCCACCCGTCCACTCACCACCA
* * * * * * *
2379730 CCACC-CCTCTACT-CAC-CACCACCACCACAAGTCCACTTC-CCACCCCCACCAGTGCACTC-C
1 CCACCACCACCAGTGCACTCACCACCCCCAC-CGTCCAC-TCACCACCACCACC-GTCCACTCAC
* * *
2379790 TCACCTCCACCCGTCTACTCTCCACCA
63 -CACCCCCACCCGTCCACTCACCACCA
*
2379817 CCACCACCACCTA-TGAACTCACCACCCCCACCTGTCCACTCACCACCACCACCGATCCACTCAC
1 CCACCACCACC-AGTGCACTCACCACCCCCACC-GTCCACTCACCACCACCACCG-TCCACTCAC
*
2379881 CACCCCCACCCGTCTACTCACCACCA
63 CACCCCCACCCGTCCACTCACCACCA
* * * * * *
2379907 CCACCATCACCAGTTCACTTC-CCACCCCCACCAGTGCACTCCCCACCCCCACCCGTCCAATCAC
1 CCACCACCACCAGTGCAC-TCACCACCCCCACC-GTCCACTCACCACCACCA-CCGTCCACTCAC
* *
2379971 CACCTCCAGCCGTCCACT---CACCA
63 CACCCCCACCCGTCCACTCACCACCA
* * *
2379994 CCACCA--GCC-GTCCACTCACCACCCCCTCCCGTCCACTCACCACCACCACCGTCGGTCTACTC
1 CCACCACCACCAGTGCACTCACCACCCCC-ACCGTCCACTCACCACCACCACCGTC---C-ACTC
*
2380056 ACCACCCCCTCCCGTCCACT--CC-CCA
61 ACCACCCCCACCCGTCCACTCACCACCA
* * *
2380081 CCACCACCACCAGTGCACTCACCACCCCCACCGAACTACTCACCACCACCACC-ACCAC-CACCA
1 CCACCACCACCAGTGCACTCACCACCCCCACCG-TCCACTCACCACCACCACCGTCCACTCACCA
2380144 CC
65 CC
2380146 ACTAGTCCAC
Statistics
Matches: 408, Mismatches: 63, Indels: 79
0.74 0.11 0.14
Matches are distributed among these distances:
83 7 0.02
84 62 0.15
85 8 0.02
86 4 0.01
87 84 0.21
88 8 0.02
89 16 0.04
90 171 0.42
91 7 0.02
92 8 0.02
93 22 0.05
94 4 0.01
95 7 0.02
ACGTcount: A:0.24, C:0.59, G:0.05, T:0.12
Consensus pattern (88 bp):
CCACCACCACCAGTGCACTCACCACCCCCACCGTCCACTCACCACCACCACCGTCCACTCACCAC
CCCCACCCGTCCACTCACCACCA
Found at i:2380086 original size:3 final size:3
Alignment explanation
Indices: 2380078--2380147 Score: 59
Period size: 3 Copynumber: 21.3 Consensus size: 3
2380068 CGTCCACTCC
* * *
2380078 CCA CCA CCA CCA CCA GTGCA CTCA CCA CCC CCA CCGAA CTA CTCA CCA
1 CCA CCA CCA CCA CCA --CCA C-CA CCA CCA CCA CC--A CCA C-CA CCA
2380126 CCA CCA CCA CCA CCA CCA CCA C
1 CCA CCA CCA CCA CCA CCA CCA C
2380148 TAGTCCACTC
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
3 46 0.84
4 5 0.09
5 4 0.07
ACGTcount: A:0.30, C:0.60, G:0.04, T:0.06
Consensus pattern (3 bp):
CCA
Found at i:2380184 original size:57 final size:57
Alignment explanation
Indices: 2380078--2380191 Score: 133
Period size: 57 Copynumber: 2.0 Consensus size: 57
2380068 CGTCCACTCC
* * *
2380078 CCACCACCACCACCAGTGCACTCACCACCCCCACCGAACTACTCACCACCACCACCA
1 CCACCACCACCACCAGTCCACTCACCACCCCCACAGAACTAATCACCACCACCACCA
* * * *
2380135 CCACCACCACCACTAGTCCACTC-CTCACCCCCACTAGTAC-AATCTCCACCTCCACCA
1 CCACCACCACCACCAGTCCACTCAC-CACCCCCAC-AGAACTAATCACCACCACCACCA
2380192 GTTCTATCTC
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
56 1 0.02
57 44 0.92
58 3 0.06
ACGTcount: A:0.28, C:0.56, G:0.04, T:0.11
Consensus pattern (57 bp):
CCACCACCACCACCAGTCCACTCACCACCCCCACAGAACTAATCACCACCACCACCA
Found at i:2383122 original size:21 final size:21
Alignment explanation
Indices: 2383098--2383171 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
2383088 ATCCACGCCT
* *
2383098 CACCCCCACCGGTCCACTCAC
1 CACCACCACCAGTCCACTCAC
* *
2383119 CACCACCACTAGTCCACTCCC
1 CACCACCACCAGTCCACTCAC
* * * *
2383140 CACCTCCACCAGTACAATCTC
1 CACCACCACCAGTCCACTCAC
*
2383161 CACCTCCACCA
1 CACCACCACCA
2383172 ATTCCATCTC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.24, C:0.57, G:0.05, T:0.14
Consensus pattern (21 bp):
CACCACCACCAGTCCACTCAC
Found at i:2383180 original size:21 final size:21
Alignment explanation
Indices: 2383139--2383188 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
2383129 AGTCCACTCC
*
2383139 CCACCTCCACCAGTACAATCT
1 CCACCTCCACCAATACAATCT
* *
2383160 CCACCTCCACCAATTCCATCT
1 CCACCTCCACCAATACAATCT
*
2383181 CCTCCTCC
1 CCACCTCC
2383189 TATTGTGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.22, C:0.54, G:0.02, T:0.22
Consensus pattern (21 bp):
CCACCTCCACCAATACAATCT
Found at i:2386402 original size:42 final size:42
Alignment explanation
Indices: 2386351--2387086 Score: 717
Period size: 42 Copynumber: 16.9 Consensus size: 42
2386341 TCACCACCAC
* * *
2386351 CACCACCACCACCCGTCCACTCTCCACCCCCACCCGT-CTTCT
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGC-CCT
* * * *
2386393 CACCACCACCACCACCTATTCACTCCCCACCCCCACCAGTACACTCAC
1 CACCACCACCA-C-CC-GTCCACTCCCCACCCCCACCAGTGC-C-C-T
2386441 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
*
2386483 CACCACCACCACCCGTCCACTCCCCACCCCCACCAATGCCCT
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
* * *
2386525 CACCACCACCACCCGTCCACTCTCCACCCCCACCAATGCCTTCAC
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCC--C-T
2386570 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
* *
2386612 CACCACCACCACCCGTCCATTCCTCACCCCCACCAGTGCCCT
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
* * *
2386654 CACCACCACCACCCGTCCATTCCCCACCCCCGCCATTGCCCT
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
**
2386696 CACCACCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTGCCCT
1 ------CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
2386744 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
*
2386786 CACCACCACCACCCGTCCATTCCCCACCCCCACCAGTGCCCT
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
* * *
2386828 CACCACCACCACCCGTCCATTCCCCACCTCCACCAGTGCACT
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
* * * *
2386870 CACCACCCCCACCCATCTACTCACCACCACCACTACC-GAT-CCACT
1 CACCACCACCACCCGTCCACTCCCCACC-CC-C-ACCAG-TGCC-CT
* * * ** * *
2386915 CTCCACCCCCACCCATATACTCACCACCACCACCAGT-CCTCT
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCC-CT
* * * ** * * *
2386957 CTCCACCCCCACCAGTGAACTCACCTCCCCCACCCGT-CCACT
1 CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCC-CT
* * ** *
2386999 CACCACCACCACCTCCGGTTCACTCCTCACCCCCACCCCTACCCCT
1 CACCACCACCA-C-CC-GTCCACTCCCCACCCCCACCAGT-GCCCT
* *
2387045 CAACTCACCACCACCACCAATCCATTCCCCACCCCCACCAGT
1 C-AC-CACCACCA-C-CC-GTCCACTCCCCACCCCCACCAGT
2387087 ACAATCGCCA
Statistics
Matches: 598, Mismatches: 68, Indels: 50
0.84 0.09 0.07
Matches are distributed among these distances:
42 365 0.61
43 7 0.01
44 9 0.02
45 128 0.21
46 6 0.01
47 6 0.01
48 77 0.13
ACGTcount: A:0.21, C:0.61, G:0.05, T:0.13
Consensus pattern (42 bp):
CACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGCCCT
Found at i:2386467 original size:18 final size:18
Alignment explanation
Indices: 2386446--2386510 Score: 51
Period size: 21 Copynumber: 3.3 Consensus size: 18
2386436 CTCACCACCA
2386446 CCACCACCCGTCCACTCC
1 CCACCACCCGTCCACTCC
*
2386464 CCACCCCCACCAGTGCC-CTCACC
1 CCA---CCACCCGT-CCACT--CC
2386487 ACCACCACCCGTCCACTCC
1 -CCACCACCCGTCCACTCC
2386506 CCACC
1 CCACC
2386511 CCCACCAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
18 8 0.22
19 2 0.05
20 2 0.05
21 18 0.49
22 2 0.05
23 2 0.05
24 3 0.08
ACGTcount: A:0.18, C:0.66, G:0.06, T:0.09
Consensus pattern (18 bp):
CCACCACCCGTCCACTCC
Found at i:2386572 original size:174 final size:170
Alignment explanation
Indices: 2386351--2386902 Score: 777
Period size: 174 Copynumber: 3.2 Consensus size: 170
2386341 TCACCACCAC
* * * *
2386351 CACCACCACCACCCGTCCACTCTCCACCCCCACCCGT-CTTCTCACCACCACCACCACCTATTCA
1 CACCACCACCACCCGTCCACTCTCCACCCCCACCAGTGCCT-TCACCACCACCACCACC-GTCCA
* * *
2386415 CTCCCCACCCCCACCAGTACACTCACCACCACCACCACCCGTCCACTCCCCACCCCCACCAGTGC
64 CTCCCCACCCCCACCAGTGC-C-C-TCACCACCACCACCCGTCCATTCCCCACCCCCACCAGTGC
*
2386480 CCTCACCACCACCACCCGTCCACTCCCCACCCCCACCAATGCCCT
126 CCTCACCACCACCACCCGTCCATTCCCCACCCCCACCAATGCCCT
*
2386525 CACCACCACCACCCGTCCACTCTCCACCCCCACCAATGCCTTCACCACCACCACCACCCGTCCAC
1 CACCACCACCACCCGTCCACTCTCCACCCCCACCAGTGCCTTCACCACCACCACCA-CCGTCCAC
*
2386590 TCCCCACCCCCACCAGTGCCCTCACCACCACCACCCGTCCATTCCTCACCCCCACCAGTGCCCTC
65 TCCCCACCCCCACCAGTGCCCTCACCACCACCACCCGTCCATTCCCCACCCCCACCAGTGCCCTC
* *
2386655 ACCACCACCACCCGTCCATTCCCCACCCCCGCCATTGCCCT
130 ACCACCACCACCCGTCCATTCCCCACCCCCACCAATGCCCT
* *
2386696 CACCACCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTGCCCTCACCACCACCA-C-CCG
1 ------CACCACCACCACCCGTCCACTCTCCACCCCCACCAGTGCCTTCACCACCACCACCACCG
2386759 TCCACTCCCCACCCCCACCAGTGCCCTCACCACCACCACCCGTCCATTCCCCACCCCCACCAGTG
60 TCCACTCCCCACCCCCACCAGTGCCCTCACCACCACCACCCGTCCATTCCCCACCCCCACCAGTG
* * *
2386824 CCCTCACCACCACCACCCGTCCATTCCCCACCTCCACCAGTGCACT
125 CCCTCACCACCACCACCCGTCCATTCCCCACCCCCACCAATGCCCT
* * * * *
2386870 CACCACCCCCACCCATCTACTCACCACCACCAC
1 CACCACCACCACCCGTCCACTCTCCACCCCCAC
2386903 TACCGATCCA
Statistics
Matches: 344, Mismatches: 26, Indels: 22
0.88 0.07 0.06
Matches are distributed among these distances:
168 27 0.08
171 79 0.23
172 1 0.00
173 1 0.00
174 181 0.53
175 4 0.01
176 1 0.00
177 50 0.15
ACGTcount: A:0.21, C:0.62, G:0.06, T:0.12
Consensus pattern (170 bp):
CACCACCACCACCCGTCCACTCTCCACCCCCACCAGTGCCTTCACCACCACCACCACCGTCCACT
CCCCACCCCCACCAGTGCCCTCACCACCACCACCCGTCCATTCCCCACCCCCACCAGTGCCCTCA
CCACCACCACCCGTCCATTCCCCACCCCCACCAATGCCCT
Found at i:2386615 original size:18 final size:18
Alignment explanation
Indices: 2386594--2386664 Score: 61
Period size: 21 Copynumber: 3.6 Consensus size: 18
2386584 GTCCACTCCC
2386594 CACCCCCACCAGTGCCCT
1 CACCCCCACCAGTGCCCT
* *
2386612 CACCACCACCACCCGTCCATTCCT
1 CA-C-CC-CCACCAGTGC---CCT
2386636 CACCCCCACCAGTGCCCT
1 CACCCCCACCAGTGCCCT
*
2386654 CACCACCACCA
1 CACCCCCACCA
2386665 CCCGTCCATT
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
18 15 0.36
19 1 0.02
20 2 0.05
21 16 0.38
22 2 0.05
23 1 0.02
24 5 0.12
ACGTcount: A:0.21, C:0.61, G:0.07, T:0.11
Consensus pattern (18 bp):
CACCCCCACCAGTGCCCT
Found at i:2386680 original size:18 final size:18
Alignment explanation
Indices: 2386659--2386702 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
2386649 GCCCTCACCA
2386659 CCACCACCCGTCCATT-CC
1 CCACCACCCG-CCATTGCC
2386677 CCACC-CCCGCCATTGCC
1 CCACCACCCGCCATTGCC
2386694 CTCACCACC
1 C-CACCACC
2386703 ACCACCACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 5 0.22
17 7 0.30
18 9 0.39
19 2 0.09
ACGTcount: A:0.16, C:0.64, G:0.07, T:0.14
Consensus pattern (18 bp):
CCACCACCCGCCATTGCC
Found at i:2387054 original size:108 final size:107
Alignment explanation
Indices: 2386344--2387086 Score: 330
Period size: 108 Copynumber: 6.8 Consensus size: 107
2386334 CGTCCATTCA
* * *
2386344 CCAC-CACCACCACCACCACCCG-TCCACTCTCCACCCCCACCCGT-CTTCTCACCACCACCACC
1 CCACTCACCACCACCACTA-CCGATCCACTCTCCACCCCCACCCATAC-ACTCA-CACCACCACC
* * * *
2386406 ACCTATTCACTCCCCACCCCCACCAGT-ACACTCACCACCACCACCACCCGT
63 A---GTCCATTCCCCACCCCCACCAGTGA-ACTCACCA-C-CC-CCACCCAT
* * * * * * *
2386457 CCACTCCCCACC-CC-C-ACC-AGTGCC-CTCACCACCACCACCCGTCCACTCCCCACCCCCACC
1 CCACTCACCACCACCACTACCGA-T-CCACTCTCCACCCCCACCCATACACT-CACACCACCACC
* * * * * ** * *
2386517 AATGCC-CTCACCACCACCACCCGTCCACTCTCCACCCCCACCAAT
63 AGT-CCATTCCCCACCCCCACCAGTGAACTCACCACCCCCACCCAT
* * * * *
2386562 GCC-TTCACCACCACCACCACCCG-TCCACTCCCCACCCCCA-CCAGTGCCCTCACCACCACCAC
1 -CCACTCACCACCACCACTA-CCGATCCACTCTCCACCCCCACCCA-TACACTCA-CACCACCAC
* * ** * *
2386624 CCGTCCATTCCTCACCCCCACCAGTGCCCTCACCACCACCACCCGT
62 CAGTCCATTCCCCACCCCCACCAGTGAACTCACCACCCCCACCCAT
* * * * * * * * * * * *
2386670 CCATTCCCCACCCCCGCCATTGCC-CTCACCAC-CACCACCACCACCCGTCCACTCTTCACCCCC
1 CCA---CTCACCACCACCACTACCGAT--CCACTCTCCACCCCCACCCATACACTC-ACACCACC
* * * * ** *
2386733 ACCAGTGCC-CTCACCACCACCACCCGTCCACTCCCCACCCCCA-CCAGT
60 ACCAGT-CCATTCCCCACCCCCACCAGTGAACTCACCACCCCCACCCA-T
* * * *
2386781 GCC-CTCACCACCACCAC--CCG-TCCATTCCCCACCCCCA-CCAGTGCCCTCACCACCACCACC
1 -CCACTCACCACCACCACTACCGATCCACTCTCCACCCCCACCCA-TACACTCA-CACCACCACC
* * *
2386841 CGTCCATTCCCCACCTCCACCAGTGCACTCACCACCCCCACCCAT
63 AGTCCATTCCCCACCCCCACCAGTGAACTCACCACCCCCACCCAT
* *
2386886 CTACTCACCACCACCACTACCGATCCACTCTCCACCCCCACCCATATACTCACCACCACCACCAG
1 CCACTCACCACCACCACTACCGATCCACTCTCCACCCCCACCCATACACTCA-CACCACCACCAG
* * *
2386951 TCC-TCTCTCCACCCCCACCAGTGAACTCACCTCCCCCACCCGT
65 TCCAT-TCCCCACCCCCACCAGTGAACTCACCACCCCCACCCAT
* * *
2386994 CCACTCACCACCACCACCT-CCGGTTCACTC-CTCACCCCCACCCCTACCCCTCAACTCACCACC
1 CCACTCACCACCACCA-CTACCGATCCACTCTC-CACCCCCACCCATA-----C-ACTCA-CACC
*
2387057 ACCACCAATCCATTCCCCACCCCCACCAGT
57 ACCACCAGTCCATTCCCCACCCCCACCAGT
2387087 ACAATCGCCA
Statistics
Matches: 480, Mismatches: 99, Indels: 101
0.71 0.15 0.15
Matches are distributed among these distances:
104 8 0.02
105 81 0.17
106 12 0.03
107 16 0.03
108 194 0.40
109 8 0.02
110 7 0.01
111 90 0.19
112 15 0.03
113 6 0.01
114 42 0.09
115 1 0.00
ACGTcount: A:0.21, C:0.61, G:0.05, T:0.13
Consensus pattern (107 bp):
CCACTCACCACCACCACTACCGATCCACTCTCCACCCCCACCCATACACTCACACCACCACCAGT
CCATTCCCCACCCCCACCAGTGAACTCACCACCCCCACCCAT
Found at i:2387076 original size:21 final size:21
Alignment explanation
Indices: 2387052--2387107 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
2387042 CCTCAACTCA
* *
2387052 CCACCACCACCAATCCATTCC
1 CCACCACCACCAATACAATCC
* * *
2387073 CCACCCCCACCAGTACAATCG
1 CCACCACCACCAATACAATCC
*
2387094 CCACCTCCACCAAT
1 CCACCACCACCAAT
2387108 TTCATCTCCT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.29, C:0.55, G:0.04, T:0.12
Consensus pattern (21 bp):
CCACCACCACCAATACAATCC
Found at i:2391314 original size:22 final size:23
Alignment explanation
Indices: 2391279--2391321 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
2391269 AGTTATATAG
2391279 ATATTCTATAAT-AAAATTTTGA
1 ATATTCTATAATAAAAATTTTGA
2391301 ATATTACTAT-ATAAAAATTTT
1 ATATT-CTATAATAAAAATTTT
2391322 AACTGACTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (23 bp):
ATATTCTATAATAAAAATTTTGA
Found at i:2392746 original size:77 final size:77
Alignment explanation
Indices: 2392619--2392774 Score: 258
Period size: 77 Copynumber: 2.0 Consensus size: 77
2392609 TAAAAACAAA
* * *
2392619 ATCATGAATTTTAGATATAGCATAAGGATCAAAATATAATTTAACCTATTGTAAACTAAATATAA
1 ATCATGAATTTTAGATATAGCATAAGGACCAAAATATAATATAACCTATTGTAAACTAAAGATAA
*
2392684 AAAATACAGGTT
66 AAAATACAAGTT
* *
2392696 ATCATGAATTTTAGATATAGTATAAGGACCAAAATATAATATAACCTATTGTAAACTAAAGATAG
1 ATCATGAATTTTAGATATAGCATAAGGACCAAAATATAATATAACCTATTGTAAACTAAAGATAA
2392761 AAAATACAAGTT
66 AAAATACAAGTT
2392773 AT
1 AT
2392775 ATTTGGTAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
77 73 1.00
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (77 bp):
ATCATGAATTTTAGATATAGCATAAGGACCAAAATATAATATAACCTATTGTAAACTAAAGATAA
AAAATACAAGTT
Found at i:2394442 original size:42 final size:42
Alignment explanation
Indices: 2394414--2394505 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
2394404 ATCTCGATCT
*
2394414 GTACACTCTTCACCCCTATCAATGCACTCACTATCACCACCC
1 GTACACTCTACACCCCTATCAATGCACTCACTATCACCACCC
* * * * *
2394456 GTCCACTCTACACCCCTATCAGTGCACGCACCATCACCACTC
1 GTACACTCTACACCCCTATCAATGCACTCACTATCACCACCC
*
2394498 GTCCACTC
1 GTACACTC
2394506 CCCACCCCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.24, C:0.47, G:0.08, T:0.22
Consensus pattern (42 bp):
GTACACTCTACACCCCTATCAATGCACTCACTATCACCACCC
Found at i:2394512 original size:42 final size:42
Alignment explanation
Indices: 2394424--2394513 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
2394414 GTACACTCTT
* * *
2394424 CACCCCTATCAATGCACTCACTATCACCACCCGTCCACTCTA
1 CACCCCTATCAATGCACGCACCATCACCACCCGTCCACTCCA
* * *
2394466 CACCCCTATCAGTGCACGCACCATCACCACTCGTCCACTCCC
1 CACCCCTATCAATGCACGCACCATCACCACCCGTCCACTCCA
2394508 CACCCC
1 CACCCC
2394514 CACTAGTGCA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.23, C:0.52, G:0.07, T:0.18
Consensus pattern (42 bp):
CACCCCTATCAATGCACGCACCATCACCACCCGTCCACTCCA
Found at i:2394530 original size:42 final size:42
Alignment explanation
Indices: 2394424--2394530 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
2394414 GTACACTCTT
* * * *
2394424 CACCCCTATCAATGCACTCACTATCACCACCCGTCCACTCTA
1 CACCCCCATCAGTGCACTCACCATCACCACCCGTCCACTCCA
* * * *
2394466 CACCCCTATCAGTGCACGCACCATCACCACTCGTCCACTCCC
1 CACCCCCATCAGTGCACTCACCATCACCACCCGTCCACTCCA
*
2394508 CACCCCCA-CTAGTGCAATCACCA
1 CACCCCCATC-AGTGCACTCACCA
2394531 CCATCACTAA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 1 0.02
42 54 0.98
ACGTcount: A:0.25, C:0.50, G:0.07, T:0.18
Consensus pattern (42 bp):
CACCCCCATCAGTGCACTCACCATCACCACCCGTCCACTCCA
Found at i:2394775 original size:126 final size:126
Alignment explanation
Indices: 2394601--2396812 Score: 1204
Period size: 126 Copynumber: 17.5 Consensus size: 126
2394591 CAAACCTCAT
* * * * * * * *
2394601 CCGTCCACT-TCTCACACTCAACAATGGACTCACCACTACCATCTGTCTACTCCTCACCCTTAAT
1 CCGTCCACTCT-TCACCCTCAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAAC
* * ** * *
2394665 AGTAGACTTACCACCACCACTCGTCCAAACCTCACCCTTAACAGTAAACTCACCACCACCAC
65 AGTGGACTCACCACCACCACTCGTCCACTCCTCACCCTCAACAGTAGACTCACCACCACCAC
* * * *
2394727 CCGTTCACTCTTCACCCTCAACAGTAGACTCACCACCACCACTCGTCTACTCTTTACCCTCAACA
1 CCGTCCACTCTTCACCCTCAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAACA
* * * *
2394792 GTAGACTCACCACCA-C-C-CGTCCATTCCTCACCCTCAACAGTTGACTCACAACCACCAC
66 GTGGACTCACCACCACCACTCGTCCACTCCTCACCCTCAACAGTAGACTCACCACCACCAC
* * * * * *
2394850 CCGTCC-TTTTCTCAACCTC-ACTTGTAGCCTCACCACCACCATCACCCGT-TCACACCTCACCC
1 CCGTCCACTCT-TCACCCTCAAC-AGTAGACTCACCACCA-C--CACCCGTCT-ACTCCTCACCC
* * * * * *
2394912 TCAACAGTGGACTCAACACCACCACTACCCGTCCAGTCTTCAACCTCACCTGTAGAC-CTACCAC
60 TCAACAGTGGACTCACCACCACCACT---CGTCCACTCCTCACCCTCAACAGTAGACTC-ACCAC
*
2394976 CATCAC
121 CACCAC
* * * * * * *
2394982 CCGTCCAC-CTCTCACCCTCAACAGTAGTCTCACCACTACTACCCATCCACTCCTCACCATCAAA
1 CCGTCCACTCT-TCACCCTCAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAAC
* * * * * *
2395046 AGTGGACTCACCACCATCACTCGTCTACCCCTCACCCTTAACAGTGGACTCACCACCACCAA
65 AGTGGACTCACCACCACCACTCGTCCACTCCTCACCCTCAACAGTAGACTCACCACCACCAC
* * * * *
2395108 CCGTCCACT-TATCAACCTCAACAGTTGACTCACCATCACCACCCGTCAAATCCTCACCCTCAAC
1 CCGTCCACTCT-TCACCCTCAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAAC
* * * * * *
2395172 AGTTGACTCACCACCACAAC-CAATCAACTCATCACCCTCAACAGTAGACTCAACACCACCAC
65 AGTGGACTCACCACCACCACTC-GTCCACTCCTCACCCTCAACAGTAGACTCACCACCACCAC
* * * * * *
2395234 CCATCCACTCTTCACCCTCAATAATAGACTCACCACCATCACCCGTCCACTCATCACCCTCTAA-
1 CCGTCCACTCTTCACCCTCAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTC-AAC
* * * * * *
2395298 AGTGGACTCACCACCACCA-TCCGTCCACTCATCACCCTTAACAGTGGACTAAACACTACCAC
65 AGTGGACTCACCACCACCACT-CGTCCACTCCTCACCCTCAACAGTAGACTCACCACCACCAC
* * * * *
2395360 CCGTCCACTCTTCACCCTCCAA-AGTGGACTCACCACCACCATCCGTCCACTCATCACCCTTAAC
1 CCGTCCACTCTTCACCCT-CAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAAC
* * * ** * *
2395424 TGTTGACTCAACACCACCAC-CAGTCCACTTTTTACCCTCAACACTAGACTCACCACCACCAC
65 AGTGGACTCACCACCACCACTC-GTCCACTCCTCACCCTCAACAGTAGACTCACCACCACCAC
* * * *
2395486 CCGTCTACTCCTCACCCTCAATC-GTGGACTCACCACCACCATCCG-CTCACTCCTCACCCTCAA
1 CCGTCCACTCTTCACCCTCAA-CAGTAGACTCACCACCACCACCCGTCT-ACTCCTCACCCTCAA
* * * * *
2395549 CATTGGACTCACCACCACTA-TCCGTCCACTCATCATCCTCAACAGTGGACTCACCACCACCAC
64 CAGTGGACTCACCACCACCACT-CGTCCACTCCTCACCCTCAACAGTAGACTCACCACCACCAC
* * * *
2395612 CC-TCCCATTCTTCACCCGT-AACAGTGGACTCACCACCACTACCCGTCTACTCCTCACCCTCTA
1 CCGT-CCACTCTTCACCC-TCAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAA
* * * * * * * * * **
2395675 CAGTGGACTAACCATCATCACCCGTCCAGTCTTCACCGTCAACAGTGGACTCACCACTACCTT
64 CAGTGGACTCACCACCACCACTCGTCCACTCCTCACCCTCAACAGTAGACTCACCACCACCAC
* * * * * * * * * *
2395738 CTGTTCACTCCTCACTCC-GATCAGT-GCACTCACCATCC-CCACCCGTCCATTCTTTACCCACA
1 CCGTCCACTCTTCAC-CCTCAACAGTAG-ACTCACCA-CCACCACCCGTCTACTCCTCACCCTCA
* * * * * *
2395800 ATAGTTGACTCACCACCACCTCTCGTCCACTCTTCACCCTC-ACTAGTGGACTCACCACCATCAC
63 ACAGTGGACTCACCACCACCACTCGTCCACTCCTCACCCTCAAC-AGTAGACTCACCACCACCAC
* * * ** * * * ** *
2395864 CCATCCACTTTTCACCATC-ACTAGT-GAACTCAAAACCACCATCTGTCCACTTATCACCC-AAA
1 CCGTCCACTCTTCACCCTCAAC-AGTAG-ACTCACCACCACCACCCGTCTACTCCTCACCCTCAA
* * ** * * *
2395926 CTAGTAGACACAAAACCACCACCCGTCCACT-CTCTACCC-CTATCAGT-GCACTCACCATCACC
64 C-AGTGGACTCACCACCACCACTCGTCCACTCCTC-ACCCTC-AACAGTAG-ACTCACCACCACC
*
2395988 AT
125 AC
* * * * * * * * *
2395990 CCGTCCACTCTTCATCCACAACAATTGACCCACCACCACCTCCCGTCCACTCTTCACCCTCACCA
1 CCGTCCACTCTTCACCCTCAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAACA
* * ** * * * * * * * *
2396055 GCGGACACAAAACTACCAC-CTGTCCA-TTCTCTACCCTTATCAG-CGCACTTACCATCACTAC
66 GTGGACTCACCACCACCACTC-GTCCACTCCTC-ACCCTCAACAGTAG-ACTCACCACCACCAC
* * * * *
2396116 CCGTCCACTCTTCACCCAT-AACAGTTGACTCACCACCACCTCTCGTCCACTCCTCACCCTCACC
1 CCGTCCACTCTTCACCC-TCAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAAC
* * * * * * * * *
2396180 AGTGGACTCACCACCCCCACCCGTTCACTCTTTACCCTTACCAGTAGACTCGCCATCACCACCAT
65 AGTGGACTCACCACCACCACTCGTCCACTCCTCACCCTCAACAGTAGACT---CACCACCACCAC
* * * ** * ** * * * ** *
2396245 CCATTCACTCTTCACCGTCGTCATTAGACTCAAAACAACTACCCGTCCACTATTCACCCTCACCA
1 CCGTCCACTCTTCACCCTCAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAACA
** ** * * ** * * * ** * *
2396310 GTGGACTCAAAACCATTACCCTTTTACT-CTCCACCAC-GATCAATTCATTCACCATCACCAC
66 GTGGACTCACCACCACCACTCGTCCACTCCT-CACC-CTCAACAGTAGACTCACCACCACCAC
* * * * * * * * * * *
2396371 CTGTCCACTCCTCTCCCTCAACAGTGGA-TACACCACTACCTCTCGTCCACTTCTCGCCCTCACC
1 CCGTCCACTCTTCACCCTCAACAGTAGACT-CACCACCACCACCCGTCTACTCCTCACCCTCAAC
* * * * * *
2396435 AGTGGACTCATCACC-CCTTCCCGTCCACTCCTCGCCCT-AATCAGTGGACTCACCACCATCAC
65 AGTGGACTCACCACCACC-ACTCGTCCACTCCTCACCCTCAA-CAGTAGACTCACCACCACCAC
* * * * * *** *
2396497 CCTTCCACTCCTCACCCTC-ACTAGTGGACTGACAACCATTTCCCATAC-ACT-CTCCACCAC-C
1 CCGTCCACTCTTCACCCTCAAC-AGTAGACTCACCACCACCACCCGT-CTACTCCT-CACC-CTC
* * * * * * * * * *
2396558 -ACAAGTGAACTCACCACTACAACCCGTCCACTCCTCAACCTCAGCATTGGACTTACCACCATCA
62 AAC-AGTGGACTCACCACCACCACTCGTCCACTCCTCACCCTCAACAGTAGACTCACCACCACCA
2396622 C
126 C
* * * * *
2396623 CCGTCCACTCTTCACCCTC-ACTAGTGGACTCACCACCATCACCTGTCCACTCCTCTCCCTC-AC
1 CCGTCCACTCTTCACCCTCAAC-AGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAAC
** * * * * * * *
2396686 AAGTGGACTCACCACCATTACCCTTCCACCCCTCACCCTCACCCTCACCAATGGACTTACCTCCA
65 -AGTGGACTCACCACCACCACTCGTCCA---CT---CCTCACCCTCAACAGTAGACTCACCACCA
**
2396751 TTAC
123 CCAC
* * * * * *
2396755 CCGTCCACTCCTCACCCTCACCAGTGGACTCACCAACACCACCCGTCCACTCTTCACC
1 CCGTCCACTCTTCACCCTCAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACC
2396813 TACACTACTC
Statistics
Matches: 1619, Mismatches: 375, Indels: 178
0.75 0.17 0.08
Matches are distributed among these distances:
122 4 0.00
123 61 0.04
124 2 0.00
125 37 0.02
126 1208 0.75
127 38 0.02
128 3 0.00
129 124 0.08
130 1 0.00
131 2 0.00
132 136 0.08
133 3 0.00
ACGTcount: A:0.26, C:0.45, G:0.08, T:0.21
Consensus pattern (126 bp):
CCGTCCACTCTTCACCCTCAACAGTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAACA
GTGGACTCACCACCACCACTCGTCCACTCCTCACCCTCAACAGTAGACTCACCACCACCAC
Found at i:2394786 original size:84 final size:84
Alignment explanation
Indices: 2394601--2396812 Score: 1486
Period size: 84 Copynumber: 26.2 Consensus size: 84
2394591 CAAACCTCAT
* * * * * * * *
2394601 CCGTCCACT-TCTCACACTCAACAATGGACTCACCACTACCATCTGTCTACTCCTCACCCTTAAT
1 CCGTCCACTCT-TCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAAC
* *
2394665 AGTAGACTTACCACCACCAC
65 AGTGGACTCACCACCACCAC
* ** * * ** * *
2394685 TCGTCCAAACCTCACCCTTAACAGTAAACTCACCACCACCACCCGTTCACTCTTCACCCTCAACA
1 CCGTCCACTCTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAACA
*
2394750 GTAGACTCACCACCACCAC
66 GTGGACTCACCACCACCAC
* * * * *
2394769 TCGTCTACTCTTTACCCTCAACAGTAGACT---CACCACCACCCGTCCATTCCTCACCCTCAACA
1 CCGTCCACTCTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAACA
* *
2394831 GTTGACTCACAACCACCAC
66 GTGGACTCACCACCACCAC
* * * * * * * *
2394850 CCGTCC-TTTTCTCAACCTC-ACTTGTAGCCTCACCACCACCATCACCCGTTCACACCTCACCCT
1 CCGTCCACTCT-TCACCCTCAAC-AGTGGACTCACCACCA-C--CACCCGTCCACTCCTCACCCT
*
2394913 CAACAGTGGACTCAACACCACCACTAC
61 CAACAGTGGACT---CACCACCACCAC
* * * * * *
2394940 CCGTCCAGTCTTCAACCTCACCTGTAGAC-CTACCACCATCACCCGTCCAC-CTCTCACCCTCAA
1 CCGTCCACTCTTCACCCTCAACAGTGGACTC-ACCACCACCACCCGTCCACTC-CTCACCCTCAA
* * * *
2395003 CAGTAGTCTCACCACTACTAC
64 CAGTGGACTCACCACCACCAC
* * * * * * * * *
2395024 CCATCCACTCCTCACCATCAAAAGTGGACTCACCACCATCACTCGTCTACCCCTCACCCTTAACA
1 CCGTCCACTCTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAACA
*
2395089 GTGGACTCACCACCACCAA
66 GTGGACTCACCACCACCAC
* * * * *
2395108 CCGTCCACT-TATCAACCTCAACAGTTGACTCACCATCACCACCCGTCAAATCCTCACCCTCAAC
1 CCGTCCACTCT-TCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAAC
* *
2395172 AGTTGACTCACCACCACAAC
65 AGTGGACTCACCACCACCAC
** * * * * * * *
2395192 CAATCAACTCATCACCCTCAACAGTAGACTCAACACCACCACCCATCCACTCTTCACCCTCAATA
1 CCGTCCACTCTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAACA
* * *
2395257 ATAGACTCACCACCATCAC
66 GTGGACTCACCACCACCAC
* * * *
2395276 CCGTCCACTCATCACCCTCTAA-AGTGGACTCACCACCACCATCCGTCCACTCATCACCCTTAAC
1 CCGTCCACTCTTCACCCTC-AACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAAC
* * *
2395340 AGTGGACTAAACACTACCAC
65 AGTGGACTCACCACCACCAC
* * *
2395360 CCGTCCACTCTTCACCCTCCAA-AGTGGACTCACCACCACCATCCGTCCACTCATCACCCTTAAC
1 CCGTCCACTCTTCACCCT-CAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAAC
* * *
2395424 TGTTGACTCAACACCACCAC
65 AGTGGACTCACCACCACCAC
* * * * * *
2395444 CAGTCCACTTTTTACCCTCAACACTAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAATC
1 CCGTCCACTCTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAA-C
*
2395509 -GTGGACTCACCACCACCAT
65 AGTGGACTCACCACCACCAC
* * * * * *
2395528 CCG-CTCACTCCTCACCCTCAACATTGGACTCACCACCACTATCCGTCCACTCATCATCCTCAAC
1 CCGTC-CACTCTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAAC
2395592 AGTGGACTCACCACCACCAC
65 AGTGGACTCACCACCACCAC
* * * *
2395612 CC-TCCCATTCTTCACCCGT-AACAGTGGACTCACCACCACTACCCGTCTACTCCTCACCCTCTA
1 CCGT-CCACTCTTCACCC-TCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAA
* * *
2395675 CAGTGGACTAACCATCATCAC
64 CAGTGGACTCACCACCACCAC
* * * ** * * * *
2395696 CCGTCCAGTCTTCACCGTCAACAGTGGACTCACCACTACCTTCTGTTCACTCCTCACTCC-GATC
1 CCGTCCACTCTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCAC-CCTCAAC
*
2395760 AGTGCACTCACCATCC-CCAC
65 AGTGGACTCACCA-CCACCAC
* * * * * * * *
2395780 CCGTCCATTCTTTACCCACAATAGTTGACTCACCACCACCTCTCGTCCACTCTTCACCCTC-ACT
1 CCGTCCACTCTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAAC-
*
2395844 AGTGGACTCACCACCATCAC
65 AGTGGACTCACCACCACCAC
* * * * ** * * ** *
2395864 CCATCCACTTTTCACCATC-ACTAGTGAACTCAAAACCACCATCTGTCCACTTATCACCC-AAAC
1 CCGTCCACTCTTCACCCTCAAC-AGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAAC
* * **
2395927 TAGTAGACACAAAACCACCAC
65 -AGTGGACTCACCACCACCAC
* * * * * * *
2395948 CCGTCCACTC-TCTACCC-CTATCAGTGCACTCACCATCACCATCCGTCCACTCTTCATCCACAA
1 CCGTCCACTCTTC-ACCCTC-AACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAA
* * * *
2396011 CAATTGACCCACCACCACCTC
64 CAGTGGACTCACCACCACCAC
* * * ** * * * * *
2396032 CCGTCCACTCTTCACCCTCACCAGCGGACACAAAACTACCACCTGTCCA-TTCTCTACCCTTATC
1 CCGTCCACTCTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTC-ACCCTCAAC
* * * * *
2396096 AGCGCACTTACCATCACTAC
65 AGTGGACTCACCACCACCAC
* * * *
2396116 CCGTCCACTCTTCACCCAT-AACAGTTGACTCACCACCACCTCTCGTCCACTCCTCACCCTCACC
1 CCGTCCACTCTTCACCC-TCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAAC
*
2396180 AGTGGACTCACCACCCCCAC
65 AGTGGACTCACCACCACCAC
* * * * * * * * * * * *
2396200 CCGTTCACTCTTTACCCTTACCAGTAGACTCGCCATCACCACCATCCATTCACTCTTCACCGTCG
1 CCGTCCACTCTTCACCCTCAACAGTGGACT---CACCACCACCACCCGTCCACTCCTCACCCTCA
* * * ** * *
2396265 TCATTAGACTCAAAACAACTAC
63 ACAGTGGACTCACCACCACCAC
* * ** ** * ** * *
2396287 CCGTCCACTATTCACCCTCACCAGTGGACTCAAAACCATTACCCTTTTACT-CTCCACCAC-GAT
1 CCGTCCACTCTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCT-CACC-CTCAA
* ** * *
2396350 CAATTCATTCACCATCACCAC
64 CAGTGGACTCACCACCACCAC
* * * * * * * * *
2396371 CTGTCCACTCCTCTCCCTCAACAGTGGA-TACACCACTACCTCTCGTCCACTTCTCGCCCTCACC
1 CCGTCCACTCTTCACCCTCAACAGTGGACT-CACCACCACCACCCGTCCACTCCTCACCCTCAAC
* *
2396435 AGTGGACTCATCACC-CCTTC
65 AGTGGACTCACCACCACC-AC
* * * *
2396455 CCGTCCACTCCTCGCCCT-AATCAGTGGACTCACCACCATCACCCTTCCACTCCTCACCCTC-AC
1 CCGTCCACTCTTCACCCTCAA-CAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAAC
* * ***
2396518 TAGTGGACTGACAACCATTTC
65 -AGTGGACTCACCACCACCAC
* * * * * * * *
2396539 CCATACACTCTCCACCAC-C-ACAAGTGAACTCACCACTACAACCCGTCCACTCCTCAACCTCAG
1 CCGTCCACTCTTCACC-CTCAAC-AGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAA
* * *
2396602 CATTGGACTTACCACCATCAC
64 CAGTGGACTCACCACCACCAC
* * *
2396623 CCGTCCACTCTTCACCCTC-ACTAGTGGACTCACCACCATCACCTGTCCACTCCTCTCCCTC-AC
1 CCGTCCACTCTTCACCCTCAAC-AGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAAC
**
2396686 AAGTGGACTCACCACCATTAC
65 -AGTGGACTCACCACCACCAC
* * * * * * **
2396707 CCTTCCACCCCTCACCCTCACCCTCACCAATGGACTTACCTCCATTACCCGTCCACTCCTCACCC
1 CCGTCCA---CT---CTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCC
* *
2396772 TCACCAGTGGACTCACCAACACCAC
60 TCAACAGTGGACTCACCACCACCAC
2396797 CCGTCCACTCTTCACC
1 CCGTCCACTCTTCACC
2396813 TACACTACTC
Statistics
Matches: 1643, Mismatches: 410, Indels: 150
0.75 0.19 0.07
Matches are distributed among these distances:
80 4 0.00
81 62 0.04
83 30 0.02
84 1285 0.78
85 30 0.02
86 1 0.00
87 123 0.07
89 1 0.00
90 102 0.06
91 5 0.00
ACGTcount: A:0.26, C:0.45, G:0.08, T:0.21
Consensus pattern (84 bp):
CCGTCCACTCTTCACCCTCAACAGTGGACTCACCACCACCACCCGTCCACTCCTCACCCTCAACA
GTGGACTCACCACCACCAC
Found at i:2395222 original size:21 final size:21
Alignment explanation
Indices: 2395161--2395228 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
2395151 CGTCAAATCC
*
2395161 TCACCCTCAACAGTTGACTCA
1 TCACCCTCAACAGTAGACTCA
* * *
2395182 CCA-CCACAACCAATCA-ACTCA
1 TCACCCTCAA-CAGT-AGACTCA
2395203 TCACCCTCAACAGTAGACTCA
1 TCACCCTCAACAGTAGACTCA
*
2395224 ACACC
1 TCACC
2395229 ACCACCCATC
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
20 6 0.17
21 24 0.69
22 5 0.14
ACGTcount: A:0.35, C:0.43, G:0.06, T:0.16
Consensus pattern (21 bp):
TCACCCTCAACAGTAGACTCA
Found at i:2395811 original size:42 final size:42
Alignment explanation
Indices: 2394625--2396812 Score: 860
Period size: 42 Copynumber: 51.8 Consensus size: 42
2394615 CACTCAACAA
* * * * * **
2394625 TGGACTCACCACTACCATCTGTCTACTCCTCACCCTTAATAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * ** * ** *
2394667 TAGACTTACCACCACCACTCGTCCAAACCTCACCCTTAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
** * * *
2394709 TAAACTCACCACCACCACCCGTTCACTCTTCACCCTCAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * * *
2394751 TAGACTCACCACCACCACTCGTCTACTCTTTACCCTCAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * *
2394793 TAGACT---CACCACCACCCGTCCATTCCTCACCCTCAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * * * * *
2394832 TTGACTCACAACCACCACCCGTCC-TTTTCTCAACCTCACTTG
1 TGGACTCACCACCACCACCCGTCCACTCT-TCACCCACAATAG
* * * * * * *
2394874 TAGCCTCACCACCACCATCACCCGTTCACACCTCACCCTCAACAG
1 TGGACTCACCACCA-C--CACCCGTCCACTCTTCACCCACAATAG
* * *
2394919 TGGACTCAACACCACCACTACCCGTCCAGTCTTCAACCTCAC-CT-G
1 TGGACT---CACCACCACCACCCGTCCACTCTTC-ACC-CACAATAG
* * * *
2394964 TAGAC-CTACCACCATCACCCGTCCAC-CTCTCACCCTCAACAG
1 TGGACTC-ACCACCACCACCCGTCCACTCT-TCACCCACAATAG
* * * * * * *
2395006 TAGTCTCACCACTACTACCCATCCACTCCTCA-CCATCAAAAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCA-CAATAG
* * * * * ** *
2395048 TGGACTCACCACCATCACTCGTCTACCCCTCACCCTTAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * *
2395090 TGGACTCACCACCACCAACCGTCCACT-TATCAACCTCAACAG
1 TGGACTCACCACCACCACCCGTCCACTCT-TCACCCACAATAG
* * * * * * *
2395132 TTGACTCACCATCACCACCCGTCAAATCCTCACCCTCAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * ** * * * *
2395174 TTGACTCACCACCACAACCAATCAACTCATCACCCTCAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * *
2395216 TAGACTCAACACCACCACCCATCCACTCTTCACCCTCAATAA
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * *
2395258 TAGACTCACCACCATCACCCGTCCACTCATCACCCTCTAA-AG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCAC-AATAG
* * ** *
2395300 TGGACTCACCACCACCATCCGTCCACTCATCACCCTTAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * *
2395342 TGGACTAAACACTACCACCCGTCCACTCTTCACCCTCCAA-AG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCC-ACAATAG
* * **
2395384 TGGACTCACCACCACCATCCGTCCACTCATCACCCTTAACT-G
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAA-TAG
* * * * * * * *
2395426 TTGACTCAACACCACCACCAGTCCACTTTTTACCCTCAACAC
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * *
2395468 TAGACTCACCACCACCACCCGTCTACTCCTCACCCTCAATCG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * *
2395510 TGGACTCACCACCACCATCCG-CTCACTCCTCACCCTCAACAT
1 TGGACTCACCACCACCACCCGTC-CACTCTTCACCCACAATAG
* * * * * *
2395552 TGGACTCACCACCACTATCCGTCCACTCATCATCCTCAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* ** *
2395594 TGGACTCACCACCACCACCC-TCCCATTCTTCACCCGTAACAG
1 TGGACTCACCACCACCACCCGT-CCACTCTTCACCCACAATAG
* * * * * *
2395636 TGGACTCACCACCACTACCCGTCTACTCCTCACCCTCTACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * ** *
2395678 TGGACTAACCATCATCACCCGTCCAGTCTTCACCGTCAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* ** * * * * *
2395720 TGGACTCACCACTACCTTCTGTTCACTCCTCACTC-CGATCAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAAT-AG
* * *
2395762 TGCACTCACCATCC-CCACCCGTCCATTCTTTACCCACAATAG
1 TGGACTCACCA-CCACCACCCGTCCACTCTTCACCCACAATAG
* * * * *
2395804 TTGACTCACCACCACCTCTCGTCCACTCTTCACCCTCACTAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * *
2395846 TGGACTCACCACCATCACCCATCCACTTTTCA-CCATCACTAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCA-CAATAG
* ** * *
2395888 TGAACTCAAAACCACCATCTGTCCACT-TATCACCCA-AACTAG
1 TGGACTCACCACCACCACCCGTCCACTCT-TCACCCACAA-TAG
* * ** *
2395930 TAGACACAAAACCACCACCCGTCCACTC-TCTACCC-CTATCAG
1 TGGACTCACCACCACCACCCGTCCACTCTTC-ACCCACAAT-AG
* * * * * *
2395972 TGCACTCACCATCACCATCCGTCCACTCTTCATCCACAACAA
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * **
2396014 TTGACCCACCACCACCTCCCGTCCACTCTTCACCCTCACCAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * ** * * * **
2396056 CGGACACAAAACTACCACCTGTCCATTC-TCTACCC-TTATCAG
1 TGGACTCACCACCACCACCCGTCCACTCTTC-ACCCACAAT-AG
* * * * * * *
2396098 CGCACTTACCATCACTACCCGTCCACTCTTCACCCATAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * * **
2396140 TTGACTCACCACCACCTCTCGTCCACTCCTCACCCTCACCAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * ** **
2396182 TGGACTCACCACCCCCACCCGTTCACTCTTTACCCTTACCAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * * ** * *
2396224 TAGACTCGCCATCACCACCATCCATTCACTCTTCACCGTC-GTCAT
1 TGGACT---CACCACCACCACCCGTCCACTCTTCACCCACAAT-AG
* ** * * * * **
2396269 TAGACTCAAAACAACTACCCGTCCACTATTCACCCTCACCAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
** ** * ** * * *
2396311 TGGACTCAAAACCATTACCCTTTTACTCTCCA-CCACGATCAA
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAAT-AG
** * * * * * * *
2396353 TTCATTCACCATCACCACCTGTCCACTCCTCTCCCTCAACAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * * **
2396395 TGGA-TACACCACTACCTCTCGTCCACT-TCTCGCCCTCACCAG
1 TGGACT-CACCACCACCACCCGTCCACTCT-TCACCCACAATAG
* * * * *
2396437 TGGACTCATCACC-CCTTCCCGTCCACTCCTCGCCC-TAATCAG
1 TGGACTCACCACCACC-ACCCGTCCACTCTTCACCCACAAT-AG
* * * * *
2396479 TGGACTCACCACCATCACCCTTCCACTCCTCACCCTCACTAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * *** * * *
2396521 TGGACTGACAACCATTTCCCATACACTCTCCA-CCACCACA-AG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCA-CA-ATAG
* * * * * * ** *
2396563 TGAACTCACCACTACAACCCGTCCACTCCTCAACCTCAGCAT
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * *
2396605 TGGACTTACCACCATCACCCGTCCACTCTTCACCCTCACTAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
* * * * *
2396647 TGGACTCACCACCATCACCTGTCCACTCCTCTCCCTCACA-AG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACA-ATAG
** * * * ** *
2396689 TGGACTCACCACCATTACCCTTCCACCCCTCACCCTCACCCTCACCAA
1 TGGACTCACCACCACCACCCGTCCA---CT---CTTCACCCACAATAG
* * ** * * **
2396737 TGGACTTACCTCCATTACCCGTCCACTCCTCACCCTCACCAG
1 TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
*
2396779 TGGACTCACCAACACCACCCGTCCACTCTTCACC
1 TGGACTCACCACCACCACCCGTCCACTCTTCACC
2396813 TACACTACTC
Statistics
Matches: 1624, Mismatches: 444, Indels: 156
0.73 0.20 0.07
Matches are distributed among these distances:
39 33 0.02
40 2 0.00
41 38 0.02
42 1396 0.86
43 36 0.02
45 72 0.04
46 3 0.00
47 3 0.00
48 41 0.03
ACGTcount: A:0.26, C:0.45, G:0.08, T:0.21
Consensus pattern (42 bp):
TGGACTCACCACCACCACCCGTCCACTCTTCACCCACAATAG
Found at i:2396659 original size:21 final size:21
Alignment explanation
Indices: 2396635--2396701 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
2396625 GTCCACTCTT
2396635 CACCCTCACTAGTGGACTCAC
1 CACCCTCACTAGTGGACTCAC
* **
2396656 CACCATCACCT-GTCCACTC-C
1 CACCCTCA-CTAGTGGACTCAC
* *
2396676 TCTCCCTCACAAGTGGACTCAC
1 -CACCCTCACTAGTGGACTCAC
2396698 CACC
1 CACC
2396702 ATTACCCTTC
Statistics
Matches: 33, Mismatches: 9, Indels: 8
0.66 0.18 0.16
Matches are distributed among these distances:
20 2 0.06
21 28 0.85
22 3 0.09
ACGTcount: A:0.22, C:0.48, G:0.10, T:0.19
Consensus pattern (21 bp):
CACCCTCACTAGTGGACTCAC
Found at i:2396741 original size:48 final size:48
Alignment explanation
Indices: 2396634--2396776 Score: 156
Period size: 48 Copynumber: 3.1 Consensus size: 48
2396624 CGTCCACTCT
* * *
2396634 TCACCCTCACTAGTGGACTCACCACCATCACCTGTCCA---CT---CC
1 TCACCCTCACAAGTGGACTCACCACCATTACCCGTCCACCCCTCACCC
* *
2396676 TCTCCCTCACAAGTGGACTCACCACCATTACCCTTCCACCCCTCACCC
1 TCACCCTCACAAGTGGACTCACCACCATTACCCGTCCACCCCTCACCC
* * *
2396724 TCACCCTCACCAA-TGGACTTACCTCCATTACCCGTCCACTCCTCACCC
1 TCACCCTCA-CAAGTGGACTCACCACCATTACCCGTCCACCCCTCACCC
2396772 TCACC
1 TCACC
2396777 AGTGGACTCA
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
42 33 0.39
45 2 0.02
48 46 0.55
49 3 0.04
ACGTcount: A:0.21, C:0.50, G:0.07, T:0.22
Consensus pattern (48 bp):
TCACCCTCACAAGTGGACTCACCACCATTACCCGTCCACCCCTCACCC
Found at i:2396982 original size:21 final size:21
Alignment explanation
Indices: 2396958--2397103 Score: 62
Period size: 21 Copynumber: 7.2 Consensus size: 21
2396948 CGTCCATTCA
2396958 CTACCTCCACCAATCAAGTCT
1 CTACCTCCACCAATCAAGTCT
* *
2396979 CTACCACCACAAATACAA-TCT
1 CTACCTCCACCAAT-CAAGTCT
* * *
2397000 CAACCT---TC-ATCAACTCT
1 CTACCTCCACCAATCAAGTCT
* * *
2397017 ATTACCTTCACTC-GTCAAGTCT
1 -CTACCTCCAC-CAATCAAGTCT
* *
2397039 CTACCACCACCAGTACAA-TCT
1 CTACCTCCACCAAT-CAAGTCT
*
2397060 CGACCTCCACCAA-C--G-CT
1 CTACCTCCACCAATCAAGTCT
*
2397077 ATCACCTCCACCAATCAAGTCT
1 CT-ACCTCCACCAATCAAGTCT
2397099 CTACC
1 CTACC
2397104 ACCAGCAGCA
Statistics
Matches: 90, Mismatches: 20, Indels: 30
0.64 0.14 0.21
Matches are distributed among these distances:
16 3 0.03
17 7 0.08
18 15 0.17
19 2 0.02
20 1 0.01
21 45 0.50
22 17 0.19
ACGTcount: A:0.30, C:0.42, G:0.05, T:0.23
Consensus pattern (21 bp):
CTACCTCCACCAATCAAGTCT
Found at i:2397039 original size:60 final size:60
Alignment explanation
Indices: 2396971--2397249 Score: 325
Period size: 60 Copynumber: 4.7 Consensus size: 60
2396961 CCTCCACCAA
* * * * *
2396971 TCAAGTCTCTACCACCACAAATACAATCTCAACCTTCATCAACTCTATTACCTTCACTCG
1 TCAAGTCTCTACCACCACAAGTACAATCTCAACCTCCACCAACTCTATCACCTCCACTCG
* * * *
2397031 TCAAGTCTCTACCACCACCAGTACAATCTCGACCTCCACCAACGCTATCACCTCCAC-CAA
1 TCAAGTCTCTACCACCACAAGTACAATCTCAACCTCCACCAACTCTATCACCTCCACTC-G
* *
2397091 TCAAGTCTCTACCACCAGC-AGCACAATCTCGAA-CTCCACCAACTCTATCACCTCCACACG
1 TCAAGTCTCTACCACCA-CAAGTACAATCTC-AACCTCCACCAACTCTATCACCTCCACTCG
* * * * *
2397151 TCAAG-CTTTACCACCACCAGTACAATCTCGACCTCCACCAACTCTATCACCTCCAATTG
1 TCAAGTCTCTACCACCACAAGTACAATCTCAACCTCCACCAACTCTATCACCTCCACTCG
**
2397210 TCAAGTCTCTACCACCACCATTTA-AATCTCAACCTCCACC
1 TCAAGTCTCTACCACCA-CAAGTACAATCTCAACCTCCACC
2397250 TGCTAGGTTT
Statistics
Matches: 187, Mismatches: 24, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
58 2 0.01
59 50 0.27
60 129 0.69
61 6 0.03
ACGTcount: A:0.30, C:0.42, G:0.06, T:0.23
Consensus pattern (60 bp):
TCAAGTCTCTACCACCACAAGTACAATCTCAACCTCCACCAACTCTATCACCTCCACTCG
Found at i:2397190 original size:21 final size:21
Alignment explanation
Indices: 2397036--2397190 Score: 67
Period size: 21 Copynumber: 7.7 Consensus size: 21
2397026 ACTCGTCAAG
* *
2397036 TCTCTACCACCACCAGTACAA
1 TCTCGACCTCCACCAGTACAA
**
2397057 TCTCGACCTCCACCA--ACGC
1 TCTCGACCTCCACCAGTACAA
* *
2397076 TATC-ACCTCCACCAAT-CAA
1 TCTCGACCTCCACCAGTACAA
* * * *
2397095 GTCTCTACCACCAGCAGCACAA
1 -TCTCGACCTCCACCAGTACAA
* **
2397117 TCTCGAACTCCACCA--ACTC
1 TCTCGACCTCCACCAGTACAA
*
2397136 TATC-ACCTCCA-CACGT-CAA
1 TCTCGACCTCCACCA-GTACAA
* ** *
2397155 GCTTTACCACCACCAGTACAA
1 TCTCGACCTCCACCAGTACAA
2397176 TCTCGACCTCCACCA
1 TCTCGACCTCCACCA
2397191 ACTCTATCAC
Statistics
Matches: 93, Mismatches: 30, Indels: 22
0.64 0.21 0.15
Matches are distributed among these distances:
17 2 0.02
18 16 0.17
19 13 0.14
20 11 0.12
21 48 0.52
22 3 0.03
ACGTcount: A:0.30, C:0.45, G:0.07, T:0.19
Consensus pattern (21 bp):
TCTCGACCTCCACCAGTACAA
Found at i:2397215 original size:119 final size:120
Alignment explanation
Indices: 2396960--2397249 Score: 372
Period size: 119 Copynumber: 2.4 Consensus size: 120
2396950 TCCATTCACT
* * * * * *
2396960 ACCTCCACCAATCAAGTCTCTACCACCACAAATACAATCTCAACCTTCATCAACTCTATTACCTT
1 ACCTCCAACAATCAAGTCTCTACCACCACAAACACAATCTCAACCTCCACCAACTCTATCACCTC
*
2397025 CACTCGTCAAGTCTCTACCACCACCAGTACAATCTCGACCTCCACCAACGCTATC
66 CACACGTCAAGTCTCTACCACCACCAGTACAATCTCGACCTCCACCAACGCTATC
* *
2397080 ACCTCCACCAATCAAGTCTCTACCACCAGC-AGCACAATCTCGAA-CTCCACCAACTCTATCACC
1 ACCTCCAACAATCAAGTCTCTACCACCA-CAAACACAATCTC-AACCTCCACCAACTCTATCACC
* *
2397143 TCCACACGTCAAG-CTTTACCACCACCAGTACAATCTCGACCTCCACCAACTCTATC
64 TCCACACGTCAAGTCTCTACCACCACCAGTACAATCTCGACCTCCACCAACGCTATC
*** ***
2397199 ACCTCCAATTGTCAAGTCTCTACCACCACCATTTA-AATCTCAACCTCCACC
1 ACCTCCAACAATCAAGTCTCTACCACCA-CAAACACAATCTCAACCTCCACC
2397250 TGCTAGGTTT
Statistics
Matches: 149, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
118 2 0.01
119 79 0.53
120 65 0.44
121 3 0.02
ACGTcount: A:0.30, C:0.42, G:0.06, T:0.22
Consensus pattern (120 bp):
ACCTCCAACAATCAAGTCTCTACCACCACAAACACAATCTCAACCTCCACCAACTCTATCACCTC
CACACGTCAAGTCTCTACCACCACCAGTACAATCTCGACCTCCACCAACGCTATC
Found at i:2397282 original size:102 final size:99
Alignment explanation
Indices: 2397162--2397492 Score: 343
Period size: 102 Copynumber: 3.3 Consensus size: 99
2397152 CAAGCTTTAC
*** *
2397162 CACCACCAGTACAATCTCGACCTCCACCAACTCTATCACCTCCAATTGTCAAGTCTCTACCACCA
1 CACCACCAGTACAATCTCGACCTCCACCAACTCTATCACCTCCACCAGTCAGGTCTCTACCACCA
* *
2397227 CCATTTAAATCTCAACCTCCACCTGCTAGGTTTCCAT
66 CCA-TTAAATCTC-ACCTCCACC-GCTAGGTCTCTAT
* *
2397264 CACCACCAGTACAATCTCGACATCCACCAACTCTATCACCTCCACCCA-TCAGGTCTCT-CAGAC
1 CACCACCAGTACAATCTCGACCTCCACCAACTCTATCACCTCCA-CCAGTCAGGTCTCTAC-CAC
* * * *
2397327 CACC---AACTCTATCACTTCTACCCGTTAGGTCTCTA-
64 CACCATTAAATC--TCACCTCCA-CCGCTAGGTCTCTAT
*
2397362 CAACCACCAGTACAATCTCGA-CTGCCACCAACTCTATCACCTCCACCAGTCAGGTCTCTATCAC
1 C-ACCACCAGTACAATCTCGACCT-CCACCAACTCTATCACCTCCACCAGTCAGGTCTCTACCAC
* *
2397426 CACCATTACAATCTCGACCTCCACCCCTCAAGTCTCTAT
64 CACCATTA-AATCTC-ACCTCCACCGCT-AGGTCTCTAT
* *
2397465 CACCACCAATACAATCTTGACCTCCACC
1 CACCACCAGTACAATCTCGACCTCCACC
2397493 CGTTAGGTCT
Statistics
Matches: 189, Mismatches: 23, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
98 9 0.05
99 70 0.37
100 4 0.02
101 6 0.03
102 94 0.50
103 6 0.03
ACGTcount: A:0.27, C:0.42, G:0.07, T:0.23
Consensus pattern (99 bp):
CACCACCAGTACAATCTCGACCTCCACCAACTCTATCACCTCCACCAGTCAGGTCTCTACCACCA
CCATTAAATCTCACCTCCACCGCTAGGTCTCTAT
Found at i:2397330 original size:39 final size:39
Alignment explanation
Indices: 2397278--2397370 Score: 116
Period size: 39 Copynumber: 2.4 Consensus size: 39
2397268 ACCAGTACAA
* *
2397278 TCTCGACATCCACCAACTCTATCACCTCCACCCATCAGG
1 TCTCTACAACCACCAACTCTATCACCTCCACCCATCAGG
* * * *
2397317 TCTCT-CAGACCACCAACTCTATCACTTCTACCCGTTAGG
1 TCTCTACA-ACCACCAACTCTATCACCTCCACCCATCAGG
2397356 TCTCTACAACCACCA
1 TCTCTACAACCACCA
2397371 GTACAATCTC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.04
39 42 0.91
40 2 0.04
ACGTcount: A:0.26, C:0.43, G:0.08, T:0.24
Consensus pattern (39 bp):
TCTCTACAACCACCAACTCTATCACCTCCACCCATCAGG
Found at i:2397450 original size:42 final size:42
Alignment explanation
Indices: 2397400--2397618 Score: 330
Period size: 42 Copynumber: 5.2 Consensus size: 42
2397390 CAACTCTATC
* *
2397400 ACCTCCACCAGTCAGGTCTCTATCACCACCATTACAATCTCG
1 ACCTCCACCCGTCAGGTCTCTATCACCACCAGTACAATCTCG
* * * *
2397442 ACCTCCACCCCTCAAGTCTCTATCACCACCAATACAATCTTG
1 ACCTCCACCCGTCAGGTCTCTATCACCACCAGTACAATCTCG
* *
2397484 ACCTCCACCCGTTAGGTCTTTATCACCACCAGTACAATCTCG
1 ACCTCCACCCGTCAGGTCTCTATCACCACCAGTACAATCTCG
* *
2397526 ACCTCCACCCGTCAAGTCTCTATCACCACCAGTACAATTTCG
1 ACCTCCACCCGTCAGGTCTCTATCACCACCAGTACAATCTCG
* *
2397568 ACCTCCACCCGTTAGGTCTCTATCACCACCAGTACAATTTCG
1 ACCTCCACCCGTCAGGTCTCTATCACCACCAGTACAATCTCG
2397610 ACCTCCACC
1 ACCTCCACC
2397619 AACTCTATCA
Statistics
Matches: 160, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 160 1.00
ACGTcount: A:0.26, C:0.41, G:0.09, T:0.24
Consensus pattern (42 bp):
ACCTCCACCCGTCAGGTCTCTATCACCACCAGTACAATCTCG
Found at i:2397450 original size:60 final size:60
Alignment explanation
Indices: 2397326--2397443 Score: 175
Period size: 60 Copynumber: 2.0 Consensus size: 60
2397316 GTCTCTCAGA
* * * *
2397326 CCACCAACTCTATCACTTCTACCCGTTAGGTCTCTACAACCACCAGTACAATCTCGACTG
1 CCACCAACTCTATCACCTCCACCAGTCAGGTCTCTACAACCACCAGTACAATCTCGACTG
*
2397386 CCACCAACTCTATCACCTCCACCAGTCAGGTCTCTATC-ACCACCATTACAATCTCGAC
1 CCACCAACTCTATCACCTCCACCAGTCAGGTCTCTA-CAACCACCAGTACAATCTCGAC
2397444 CTCCACCCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
60 51 0.98
61 1 0.02
ACGTcount: A:0.27, C:0.41, G:0.08, T:0.24
Consensus pattern (60 bp):
CCACCAACTCTATCACCTCCACCAGTCAGGTCTCTACAACCACCAGTACAATCTCGACTG
Found at i:2397617 original size:21 final size:21
Alignment explanation
Indices: 2397365--2397619 Score: 87
Period size: 21 Copynumber: 12.3 Consensus size: 21
2397355 GTCTCTACAA
2397365 CCACCAGTACAATCTCGA-CT
1 CCACCAGTACAATCTCGACCT
** *
2397385 GCCACCA--ACTCTATC-ACCT
1 -CCACCAGTACAATCTCGACCT
* * * *
2397404 CCACCAGT-CAGGTCTCTATCA
1 CCACCAGTACA-ATCTCGACCT
*
2397425 CCACCATTACAATCTCGACCT
1 CCACCAGTACAATCTCGACCT
** * * *
2397446 CCACCCCT-CAAGTCTCTATCA
1 CCACCAGTACAA-TCTCGACCT
* *
2397467 CCACCAATACAATCTTGACCT
1 CCACCAGTACAATCTCGACCT
* ** ** * *
2397488 CCACCCGTTA-GGTCTTTATCA
1 CCACCAG-TACAATCTCGACCT
2397509 CCACCAGTACAATCTCGACCT
1 CCACCAGTACAATCTCGACCT
* * * *
2397530 CCACCCGT-CAAGTCTCTATCA
1 CCACCAGTACAA-TCTCGACCT
*
2397551 CCACCAGTACAATTTCGACCT
1 CCACCAGTACAATCTCGACCT
* ** * * *
2397572 CCACCCGTTA-GGTCTCTATCA
1 CCACCAG-TACAATCTCGACCT
*
2397593 CCACCAGTACAATTTCGACCT
1 CCACCAGTACAATCTCGACCT
2397614 CCACCA
1 CCACCA
2397620 ACTCTATCAC
Statistics
Matches: 159, Mismatches: 61, Indels: 28
0.64 0.25 0.11
Matches are distributed among these distances:
18 7 0.04
19 8 0.05
20 13 0.08
21 119 0.75
22 12 0.08
ACGTcount: A:0.26, C:0.41, G:0.09, T:0.24
Consensus pattern (21 bp):
CCACCAGTACAATCTCGACCT
Found at i:2403199 original size:77 final size:77
Alignment explanation
Indices: 2403068--2403291 Score: 340
Period size: 77 Copynumber: 2.9 Consensus size: 77
2403058 AAATTTAATA
* * * *
2403068 ATGAATTTTAGATATATTATAAGGACCATAATATAATTTAACCTATTGTCAACTAAATATAGAAA
1 ATGAATTTTAGATATAGTATAAGGACCAAAATATAATTTAACCTATTGTAAACTAAAGATAGAAA
2403133 ATACAAGTCATC
66 ATACAAGTCATC
*
2403145 ATGAATTTTAGATATAGTATAAGGACCAAAATATAATATAACCTATTGTAAACTAAAGATAGAAA
1 ATGAATTTTAGATATAGTATAAGGACCAAAATATAATTTAACCTATTGTAAACTAAAGATAGAAA
* *
2403210 ATAGAAGTTATC
66 ATACAAGTCATC
* * * * *
2403222 ATGAATTTTAAAAATGGTATAAGGACCAAAATATAATTTGACCTATTGTAAACTAAAGATCGAAA
1 ATGAATTTTAGATATAGTATAAGGACCAAAATATAATTTAACCTATTGTAAACTAAAGATAGAAA
2403287 ATACA
66 ATACA
2403292 TGTTATACTT
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
77 133 1.00
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.31
Consensus pattern (77 bp):
ATGAATTTTAGATATAGTATAAGGACCAAAATATAATTTAACCTATTGTAAACTAAAGATAGAAA
ATACAAGTCATC
Found at i:2404933 original size:42 final size:42
Alignment explanation
Indices: 2404887--2404982 Score: 138
Period size: 42 Copynumber: 2.3 Consensus size: 42
2404877 CCACCACAGG
* * *
2404887 TCCACTCTCCACCCCTACCTGTGCATTCACCCCCATCAATCA
1 TCCACTCTCCACCCCTACCTGTGCACTCACCACCACCAATCA
* *
2404929 TCCACTCCCCACCCCTACCTGTGCACTCACCACCACCACTCA
1 TCCACTCTCCACCCCTACCTGTGCACTCACCACCACCAATCA
*
2404971 TCCATTCTCCAC
1 TCCACTCTCCAC
2404983 AGTCACTAGT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.21, C:0.53, G:0.04, T:0.22
Consensus pattern (42 bp):
TCCACTCTCCACCCCTACCTGTGCACTCACCACCACCAATCA
Found at i:2405039 original size:21 final size:20
Alignment explanation
Indices: 2405015--2405124 Score: 76
Period size: 21 Copynumber: 5.2 Consensus size: 20
2405005 TTCACCTGCA
*
2405015 CACTCTCAACTCCCAACAGTG
1 CACTCCCAAC-CCCAACAGTG
* * *
2405036 CACTCACCAACACCACCAGTC
1 CACTC-CCAACCCCAACAGTG
*
2405057 CACTCCCTACCCCCAACAGTG
1 CACTCCC-AACCCCAACAGTG
* * *
2405078 CACTCACAACCACAAACAGTT
1 CACTCCCAACC-CCAACAGTG
* * *
2405099 CACTCTCCACCCCCATCAGTA
1 CACTC-CCAACCCCAACAGTG
2405120 CACTC
1 CACTC
2405125 ACTATCACCA
Statistics
Matches: 68, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
20 5 0.07
21 55 0.81
22 8 0.12
ACGTcount: A:0.30, C:0.48, G:0.06, T:0.15
Consensus pattern (20 bp):
CACTCCCAACCCCAACAGTG
Found at i:2405191 original size:42 final size:42
Alignment explanation
Indices: 2405028--2405628 Score: 267
Period size: 42 Copynumber: 14.6 Consensus size: 42
2405018 TCTCAACTCC
*
2405028 CAACAGT-GCACTCACCAACACCACCAGTCCACTCC-CTACCCC
1 CAACAGTAG-ACTCACCAACACCACCAGTCCACTCCTC-ACCCT
* * * *
2405070 CAACAGT-GCACTCA-CAACCACAAACAGTTCACT-CTCCACCCC
1 CAACAGTAG-ACTCACCAA-CACCACCAGTCCACTCCT-CACCCT
* * * * * *
2405112 CATCAGTACACTCACTATCACCACAAGTCCACCCCTCACCCT
1 CAACAGTAGACTCACCAACACCACCAGTCCACTCCTCACCCT
* * *
2405154 CAACAGTAGACTCACTAACACCACCCGTTCACTCCTCACCCT
1 CAACAGTAGACTCACCAACACCACCAGTCCACTCCTCACCCT
* * ** * * * *
2405196 CACCAGTGGAAACATCAAAACCACCCA-TTCACTCATCACCCT
1 CAACAGTAGACTCACCAACACCA-CCAGTCCACTCCTCACCCT
* * * * *
2405238 CACCAATACAATCACCACCACCAACC-GTCCACT-CTCCACCC-
1 CAACAGTAGACTCACCAACACC-ACCAGTCCACTCCT-CACCCT
2405279 CAAACAGTAGACTCA-CAACAACCACCAGTCCACT-CTACACCC-
1 C-AACAGTAGACTCACCAAC-ACCACCAGTCCACTCCT-CACCCT
** * * **
2405321 CTATTAG-AGCACTCACCATCACCACCCGTCCACTTTTCACCCT
1 C-AACAGTAG-ACTCACCAACACCACCAGTCCACTCCTCACCCT
*
2405364 ---C---A-A--CA-C-A-ACCACCTA-TTCACTCCTCACCCT
1 CAACAGTAGACTCACCAACACCACC-AGTCCACTCCTCACCCT
* * * * * * *
2405394 CACCAAT-GCACTCACCACCATCACCTGTCCACTCTTCACCCA
1 CAACAGTAG-ACTCACCAACACCACCAGTCCACTCCTCACCCT
* * * * * *
2405436 AAATAGTGGACTCA-CAATCACCACCAGTCCATTCCACACCCG
1 CAACAGTAGACTCACCAA-CACCACCAGTCCACTCCTCACCCT
* * *
2405478 AAATAGTAGACTCA-CAATCACCACCAGTCCACT-CTACACCCC
1 CAACAGTAGACTCACCAA-CACCACCAGTCCACTCCT-CACCCT
* * * *
2405520 CATCAGTACACTCACCATCACCACTCA-TCCACCCCTCACCCT
1 CAACAGTAGACTCACCAACACCAC-CAGTCCACTCCTCACCCT
* *
2405562 CAACAGTAGACTCACCAACACCACCCGTCCACTCTTCACCCT
1 CAACAGTAGACTCACCAACACCACCAGTCCACTCCTCACCCT
* * *
2405604 CACCAATGGACTCACC-ACTACCACC
1 CAACAGTAGACTCACCAAC-ACCACC
2405629 CGCACCAGTA
Statistics
Matches: 426, Mismatches: 93, Indels: 80
0.71 0.16 0.13
Matches are distributed among these distances:
30 18 0.04
32 1 0.00
33 3 0.01
35 1 0.00
37 2 0.00
39 2 0.00
40 1 0.00
41 20 0.05
42 360 0.85
43 18 0.04
ACGTcount: A:0.31, C:0.46, G:0.06, T:0.17
Consensus pattern (42 bp):
CAACAGTAGACTCACCAACACCACCAGTCCACTCCTCACCCT
Found at i:2405498 original size:156 final size:156
Alignment explanation
Indices: 2405214--2405510 Score: 402
Period size: 156 Copynumber: 1.9 Consensus size: 156
2405204 GAAACATCAA
2405214 AACCACCCATTCACTCATCACCCTCACCAATACAATCACCACCACCAACCGTCCACTCTCCACCC
1 AACCACCCATTCACTCATCACCCTCACCAATACAATCACCACCACCAACCGTCCACTCTCCACCC
* * * * *
2405279 CAAACAGTAGACTCACAACAACCACCAGTCCACTCTACACCCCTATTAGAGCACTCACCATCACC
66 AAAACAGTAGACTCACAACAACCACCAGTCCACTCCACACCCCAAATAGAGCACTCACAATCACC
*
2405344 ACCCGTCCACTTTTCACCCTCAACAC
131 ACCAGTCCACTTTTCACCCTCAACAC
* * * * * *
2405370 AACCACCTATTCACTCCTCACCCTCACCAATGCACTCACCACCATC-ACCTGTCCACTCTTCACC
1 AACCACCCATTCACTCATCACCCTCACCAATACAATCACCACCACCAACC-GTCCACTCTCCACC
* * * *
2405434 CAAAATAGTGGACTCACAATC-ACCACCAGTCCATTCCACACCCGAAATAGTAG-ACTCACAATC
65 CAAAACAGTAGACTCACAA-CAACCACCAGTCCACTCCACACCCCAAATAG-AGCACTCACAATC
2405497 ACCACCAGTCCACT
128 ACCACCAGTCCACT
2405511 CTACACCCCC
Statistics
Matches: 122, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
155 3 0.02
156 116 0.95
157 3 0.02
ACGTcount: A:0.31, C:0.45, G:0.06, T:0.18
Consensus pattern (156 bp):
AACCACCCATTCACTCATCACCCTCACCAATACAATCACCACCACCAACCGTCCACTCTCCACCC
AAAACAGTAGACTCACAACAACCACCAGTCCACTCCACACCCCAAATAGAGCACTCACAATCACC
ACCAGTCCACTTTTCACCCTCAACAC
Found at i:2405511 original size:21 final size:20
Alignment explanation
Indices: 2405487--2405543 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 20
2405477 GAAATAGTAG
2405487 ACTCACAATCACCACCAGTCC
1 ACTCAC-ATCACCACCAGTCC
* * * *
2405508 ACTCTACACCCCCATCAGTAC
1 ACTC-ACATCACCACCAGTCC
2405529 ACTCACCATCACCAC
1 ACTCA-CATCACCAC
2405544 TCATCCACCC
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
20 1 0.04
21 24 0.89
22 2 0.07
ACGTcount: A:0.32, C:0.49, G:0.04, T:0.16
Consensus pattern (20 bp):
ACTCACATCACCACCAGTCC
Found at i:2405685 original size:69 final size:69
Alignment explanation
Indices: 2405542--2405699 Score: 163
Period size: 69 Copynumber: 2.3 Consensus size: 69
2405532 CACCATCACC
* * * * * *
2405542 ACTCATCCACCCCTCACCCTCAACAGTAGACTCACCAACACCACCCGTCCACTCTTCACCCTCAC
1 ACTCA-CCACCAC-CACCCGCAACAGTACACCCACCAACACCACCCGTCCACTCCTCACCATCAC
**
2405607 CAATGG
64 CAACAG
* * * * *
2405613 ACTCACCACTACCACCCGCACCAGTACACCCACCATCACCACCTGTCTACTCCTCACCATCACCA
1 ACTCACCACCACCACCCGCAACAGTACACCCACCAACACCACCCGTCCACTCCTCACCATCACCA
*
2405678 GCAG
66 ACAG
*
2405682 ACTCACTACCACCACCCG
1 ACTCACCACCACCACCCG
2405700 TCCATTCCTC
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
69 61 0.86
70 5 0.07
71 5 0.07
ACGTcount: A:0.27, C:0.51, G:0.07, T:0.15
Consensus pattern (69 bp):
ACTCACCACCACCACCCGCAACAGTACACCCACCAACACCACCCGTCCACTCCTCACCATCACCA
ACAG
Found at i:2405725 original size:111 final size:111
Alignment explanation
Indices: 2405514--2405713 Score: 267
Period size: 111 Copynumber: 1.8 Consensus size: 111
2405504 GTCCACTCTA
* * * *
2405514 CACCCCCATCAGTACACTCACCATCACCACTCATCCACCCCTCACCCTCAACAGTAGACTCACCA
1 CACCCCCACCAGTACACCCACCATCACCACTCATCCACCCCTCACCATCAACAGCAGACTCACCA
*
2405579 ACACCACCCGTCCACTCTTCACCCTCACCAATGGACTCACCACTAC
66 ACACCACCCGTCCACTCCTCACCCTCACCAATGGACTCACCACTAC
* * * * * *
2405625 CACCCGCACCAGTACACCCACCATCACCAC-CTGTCTACTCCTCACCATCACCAGCAGACTCACT
1 CACCCCCACCAGTACACCCACCATCACCACTC-ATCCACCCCTCACCATCAACAGCAGACTCACC
* *
2405689 ACCACCACCCGTCCATTCCTCACCC
65 AACACCACCCGTCCACTCCTCACCC
2405714 GTATCAGTGG
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
110 1 0.01
111 74 0.99
ACGTcount: A:0.27, C:0.52, G:0.06, T:0.16
Consensus pattern (111 bp):
CACCCCCACCAGTACACCCACCATCACCACTCATCCACCCCTCACCATCAACAGCAGACTCACCA
ACACCACCCGTCCACTCCTCACCCTCACCAATGGACTCACCACTAC
Found at i:2405814 original size:42 final size:42
Alignment explanation
Indices: 2405758--2407074 Score: 979
Period size: 42 Copynumber: 31.1 Consensus size: 42
2405748 CCTCATCAGT
* * *
2405758 ACCAGTGCATTCACCACCACCGCCCGTCCACTCTCCACCCAC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * * *
2405800 ACCTA-TACACTCACCACCACCCCCCGTCCACTCTCCGCCCCT
1 ACC-AGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * * ** * * *
2405842 TCTAATTTACT---CACCACCACCCATCCACTTTTCACCCCC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * **
2405881 ACCAATGCACTCACCACCACTACAACCCGTCCACTCCCCACCGTC
1 ACCAGTGCACTCACCACCAC--C-ACCCGTCCACTCTCCACCCCC
* * *
2405926 ACCAGTGTACTCACCACCTCCACCCGTCCACTCTCCACCCTC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* *
2405968 ACCAATGCACTCACCACCACCACCCGTCCACTCCCCACCCCC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
2406010 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * *
2406052 ACCAATGCACTCACCACCACCACCCATCCAATCTCCACCCCC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * *
2406094 ACCAGTGCACTCACCACCACCACCCATCCACTCCCCACCCCA
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* *
2406136 ACCAGTGCACTCACCACCACCACCCATCCAATCTCCACCCCC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* *
2406178 ACCAGTGCACTCACCACCACCACCCGTCCATTCTCCACCACC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* *
2406220 ACCAGTGCACTCACCACCACCACCAGTCCAATCTCCACCCCC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
*
2406262 ACCAGTGCACTCACCACCACCACCACCCGTCCACTCTTCACCCCC
1 ACCAGTGCACT---CACCACCACCACCCGTCCACTCTCCACCCCC
* * * * *
2406307 ACCAGTCCACTCTCCACCACCACCCGTCTACTCCCCACCTCC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * * * **
2406349 ACCAGTCCACTCTCCACCACCACCAGTTCACTCTCCACTACC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * * * *** * * *
2406391 ACCCGTCCACTCTCCACCCCCACTAATGCACTCACCACCACC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * * * * *
2406433 ACCCGTCCACTC-CCTACCCCCACCAGTGCACTCACTACCACCACC
1 ACCAGTGCACTCACC-ACCACCACCCGTCCACT--CT-CCACCCCC
* * ** * * ** * *
2406478 ACCCGTCCAC-CTTTCACC-CTCATCAGAGCACTCACCACCACC
1 ACCAGTGCACTC-ACCACCAC-CACCCGTCCACTCTCCACCCCC
* * * ** * * * *
2406520 AGCTGTCCACTCTTCACCCCCACCAGTACACTCTTCACCCCC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * *
2406562 ATCAGTGCACTCACCATCACCACCCGTCCACTC-CTCACCCTC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTC-CACCCCC
* * *
2406604 ACCAATGGACTCACCACCACCACCACCACTTGTCCACTC-CTCACCCTC
1 ACCAGTGCACT---CACCACCACCACC-C--GTCCACTCTC-CACCCCC
* * * * * *
2406652 ACAATTGGAGTCACCATCACCACCCGTCCACTC-CTCACCCTC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTC-CACCCCC
* * * * * ** *
2406694 TCAAGTGGACTCACCTCCACCACCCGTTCACTCTTTACCCCG
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * * * *
2406736 ATCAGTGCACTCACCATCACCATCCGTCCACTC-CTCAACCTC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTC-CACCCCC
* * * * * *
2406778 ACCAATGGACTCACCAACACCACCCGTCCACTCTCTACCTCG
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * * * *
2406820 ATCAGTGGACTCACCAACACCACCCGTCCACTCTCCACCTCG
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * * * *
2406862 ACCAGTGGACTCACCGA-CACCACCCGTCCAGTTTTCACCCCT
1 ACCAGTGCACTCACC-ACCACCACCCGTCCACTCTCCACCCCC
* * * * * *
2406904 ATCAGTGGACTCACCAACACCACCCATCC-CGTC-CTTACCCCG
1 ACCAGTGCACTCACCACCACCACCCGTCCAC-TCTC-CACCCCC
* * * * **
2406946 ATCAGTGCACTCACCATCACCATCCGTCCACTCTTCACCGTC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * ***
2406988 ACCAGTGGACTCATCACCACCACCCGTCCACTCTCCACCTTT
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
* * * * * *
2407030 ACCAGTACACTCACCACCACTACCCGTTCATTCACCACCTCC
1 ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
2407072 ACC
1 ACC
2407075 CATCAAGTCT
Statistics
Matches: 1054, Mismatches: 185, Indels: 72
0.80 0.14 0.05
Matches are distributed among these distances:
39 29 0.03
41 4 0.00
42 856 0.81
43 8 0.01
44 5 0.00
45 125 0.12
46 2 0.00
48 25 0.02
ACGTcount: A:0.23, C:0.53, G:0.07, T:0.17
Consensus pattern (42 bp):
ACCAGTGCACTCACCACCACCACCCGTCCACTCTCCACCCCC
Found at i:2405831 original size:21 final size:21
Alignment explanation
Indices: 2405768--2405832 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
2405758 ACCAGTGCAT
*
2405768 TCACCACCACCGCCCGTCCAC
1 TCACCACCACCACCCGTCCAC
* ** *
2405789 TCTCCACC-CACACCTATACAC
1 TCACCACCAC-CACCCGTCCAC
*
2405810 TCACCACCACCCCCCGTCCAC
1 TCACCACCACCACCCGTCCAC
2405831 TC
1 TC
2405833 TCCGCCCCTT
Statistics
Matches: 32, Mismatches: 10, Indels: 4
0.70 0.22 0.09
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.22, C:0.60, G:0.05, T:0.14
Consensus pattern (21 bp):
TCACCACCACCACCCGTCCAC
Found at i:2405898 original size:21 final size:21
Alignment explanation
Indices: 2405850--2406628 Score: 513
Period size: 21 Copynumber: 36.8 Consensus size: 21
2405840 CTTCTAATTT
2405850 ACTCACCACCA-C-CCA-TCC
1 ACTCACCACCACCACCAGTCC
*** * * *
2405868 ACTTTTCACCCCCACCAATGC
1 ACTCACCACCACCACCAGTCC
*
2405889 ACTCACCACCACTACAACCCGTCC
1 ACTCACCACCAC--C-ACCAGTCC
* ** **
2405913 ACTCCCCACCGTCACCAGTGT
1 ACTCACCACCACCACCAGTCC
* *
2405934 ACTCACCACCTCCACCCGTCC
1 ACTCACCACCACCACCAGTCC
* * *
2405955 ACTCTCCACC-CTCACCAATGC
1 ACTCACCACCAC-CACCAGTCC
*
2405976 ACTCACCACCACCACCCGTCC
1 ACTCACCACCACCACCAGTCC
* * *
2405997 ACTCCCCACCCCCACCAGTGC
1 ACTCACCACCACCACCAGTCC
*
2406018 ACTCACCACCACCACCCGTCC
1 ACTCACCACCACCACCAGTCC
* * * *
2406039 ACTCTCCACCCCCACCAATGC
1 ACTCACCACCACCACCAGTCC
2406060 ACTCACCACCACCACCCA-TCC
1 ACTCACCACCACCA-CCAGTCC
* * * *
2406081 AATCTCCACCCCCACCAGTGC
1 ACTCACCACCACCACCAGTCC
2406102 ACTCACCACCACCACCCA-TCC
1 ACTCACCACCACCA-CCAGTCC
* *
2406123 ACTCCCCACC-CCAACCAGTGC
1 ACTCACCACCACC-ACCAGTCC
2406144 ACTCACCACCACCACCCA-TCC
1 ACTCACCACCACCA-CCAGTCC
* * * *
2406165 AATCTCCACCCCCACCAGTGC
1 ACTCACCACCACCACCAGTCC
*
2406186 ACTCACCACCACCACCCGTCC
1 ACTCACCACCACCACCAGTCC
* * *
2406207 ATTCTCCACCACCACCAGTGC
1 ACTCACCACCACCACCAGTCC
2406228 ACTCACCACCACCACCAGTCC
1 ACTCACCACCACCACCAGTCC
* * * *
2406249 AATCTCCACCCCCACCAGTGC
1 ACTCACCACCACCACCAGTCC
2406270 ACTCACCACCACCACCACCCGTCC
1 ACTCACCACCACCACCA---GTCC
** *
2406294 ACTCTTCACCCCCACCAGTCC
1 ACTCACCACCACCACCAGTCC
* * *
2406315 ACTCTCCACCACCACCCGTCT
1 ACTCACCACCACCACCAGTCC
* *
2406336 ACTCCCCACCTCCACCAGTCC
1 ACTCACCACCACCACCAGTCC
* *
2406357 ACTCTCCACCACCACCAGTTC
1 ACTCACCACCACCACCAGTCC
* * *
2406378 ACTCTCCACTACCACCCGTCC
1 ACTCACCACCACCACCAGTCC
* * * * *
2406399 ACTCTCCACCCCCACTAATGC
1 ACTCACCACCACCACCAGTCC
*
2406420 ACTCACCACCACCACCCGTCC
1 ACTCACCACCACCACCAGTCC
* *
2406441 ACTC-CCTACCCCCACCAGTGC
1 ACTCACC-ACCACCACCAGTCC
*
2406462 ACTCACTACCACCACCACCCGTCC
1 ACT--C-ACCACCACCACCAGTCC
** * **
2406486 AC-CTTTCACC-CTCATCAGAGC
1 ACTC-ACCACCAC-CACCAGTCC
* *
2406507 ACTCACCACCACCAGCTGTCC
1 ACTCACCACCACCACCAGTCC
** * *
2406528 ACTCTTCACCCCCACCAGTAC
1 ACTCACCACCACCACCAGTCC
** * * *
2406549 ACTCTTCACCCCCATCAGTGC
1 ACTCACCACCACCACCAGTCC
* *
2406570 ACTCACCATCACCACCCGTCC
1 ACTCACCACCACCACCAGTCC
* **
2406591 ACTC-CTCACC-CTCACCAATGG
1 ACTCAC-CACCAC-CACCAGTCC
2406612 ACTCACCACCACCACCA
1 ACTCACCACCACCACCA
2406629 CCACTTGTCC
Statistics
Matches: 579, Mismatches: 151, Indels: 59
0.73 0.19 0.07
Matches are distributed among these distances:
18 7 0.01
19 1 0.00
20 20 0.03
21 486 0.84
22 17 0.03
23 2 0.00
24 44 0.08
25 2 0.00
ACGTcount: A:0.24, C:0.56, G:0.06, T:0.15
Consensus pattern (21 bp):
ACTCACCACCACCACCAGTCC
Found at i:2406810 original size:21 final size:21
Alignment explanation
Indices: 2406743--2406891 Score: 59
Period size: 21 Copynumber: 7.1 Consensus size: 21
2406733 CCGATCAGTG
* *
2406743 CACTCACCATCACCATCCGTC
1 CACTCACCAACACCACCCGTC
** *
2406764 CACTC-CTCAAC-CTCACCAATG
1 CACTCAC-CAACAC-CACCCGTC
*
2406785 GACTCACCAACACCACCCGTC
1 CACTCACCAACACCACCCGTC
* * * * * * * *
2406806 CACTCTCTACCTCGATCAGTG
1 CACTCACCAACACCACCCGTC
*
2406827 GACTCACCAACACCACCCGTC
1 CACTCACCAACACCACCCGTC
* * * * * *
2406848 CACTCTCCACCTCGACCAGTG
1 CACTCACCAACACCACCCGTC
* *
2406869 GACTCACCGACACCACCCGTC
1 CACTCACCAACACCACCCGTC
2406890 CA
1 CA
2406892 GTTTTCACCC
Statistics
Matches: 81, Mismatches: 43, Indels: 8
0.61 0.33 0.06
Matches are distributed among these distances:
20 2 0.02
21 77 0.95
22 2 0.02
ACGTcount: A:0.25, C:0.49, G:0.10, T:0.16
Consensus pattern (21 bp):
CACTCACCAACACCACCCGTC
Found at i:2407020 original size:21 final size:21
Alignment explanation
Indices: 2406953--2407020 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
2406943 CCGATCAGTG
* * *
2406953 CACTCACCATCACCATCCGTC
1 CACTCATCACCACCACCCGTC
* ** * *
2406974 CACTCTTCACCGTCACCAGTG
1 CACTCATCACCACCACCCGTC
*
2406995 GACTCATCACCACCACCCGTC
1 CACTCATCACCACCACCCGTC
2407016 CACTC
1 CACTC
2407021 TCCACCTTTA
Statistics
Matches: 32, Mismatches: 15, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.22, C:0.50, G:0.09, T:0.19
Consensus pattern (21 bp):
CACTCATCACCACCACCCGTC
Found at i:2407026 original size:21 final size:21
Alignment explanation
Indices: 2406953--2407095 Score: 54
Period size: 21 Copynumber: 6.8 Consensus size: 21
2406943 CCGATCAGTG
* * *
2406953 CACTCACCATCACCATCCGTC
1 CACTCTCCACCACCACCCGTC
* ** * *
2406974 CACTCTTCACCGTCACCAGTG
1 CACTCTCCACCACCACCCGTC
*
2406995 GACTCAT-CACCACCACCCGTC
1 CACTC-TCCACCACCACCCGTC
*** * *
2407016 CACTCTCCACCTTTACCAGTA
1 CACTCTCCACCACCACCCGTC
* * *
2407037 CACTCACCACCACTACCCGTT
1 CACTCTCCACCACCACCCGTC
* * * *
2407058 CATTCACCACCTCCACCCATC
1 CACTCTCCACCACCACCCGTC
* * *
2407079 AAGTCTCTACCACCACC
1 CACTCTCCACCACCACC
2407096 AGTACAATCC
Statistics
Matches: 86, Mismatches: 34, Indels: 4
0.69 0.27 0.03
Matches are distributed among these distances:
20 1 0.01
21 84 0.98
22 1 0.01
ACGTcount: A:0.24, C:0.50, G:0.06, T:0.20
Consensus pattern (21 bp):
CACTCTCCACCACCACCCGTC
Found at i:2407134 original size:18 final size:18
Alignment explanation
Indices: 2407108--2407173 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 18
2407098 TACAATCCCA
*
2407108 ACCTTCACCAACTCTATC
1 ACCTCCACCAACTCTATC
* *
2407126 ACCTCCACCCGTCAAGTCTCT-
1 ACCTCCA--C--CAACTCTATC
*
2407147 ACCACCACCAACTCTATC
1 ACCTCCACCAACTCTATC
2407165 ACCTCCACC
1 ACCTCCACC
2407174 CGTCAAGTCT
Statistics
Matches: 36, Mismatches: 7, Indels: 10
0.68 0.13 0.19
Matches are distributed among these distances:
17 7 0.19
18 14 0.39
19 1 0.03
20 1 0.03
21 6 0.17
22 7 0.19
ACGTcount: A:0.26, C:0.50, G:0.03, T:0.21
Consensus pattern (18 bp):
ACCTCCACCAACTCTATC
Found at i:2407134 original size:39 final size:39
Alignment explanation
Indices: 2407091--2407196 Score: 124
Period size: 39 Copynumber: 2.7 Consensus size: 39
2407081 GTCTCTACCA
**
2407091 CCACCAGTACAA-TCCCAACCTTCACCAACTCTATCACCT
1 CCACCAGT-CAAGTCCCAACCACCACCAACTCTATCACCT
* * *
2407130 CCACCCGTCAAGTCTCTACCACCACCAACTCTATCACCT
1 CCACCAGTCAAGTCCCAACCACCACCAACTCTATCACCT
* * *
2407169 CCACCCGTCAAGTCTCTACCACCACCAA
1 CCACCAGTCAAGTCCCAACCACCACCAA
2407197 TACAATCTCA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
38 3 0.05
39 58 0.95
ACGTcount: A:0.28, C:0.48, G:0.05, T:0.19
Consensus pattern (39 bp):
CCACCAGTCAAGTCCCAACCACCACCAACTCTATCACCT
Found at i:2407193 original size:21 final size:21
Alignment explanation
Indices: 2407130--2407194 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
2407120 TCTATCACCT
2407130 CCACCCGTCAAGTCTCTACCA
1 CCACCCGTCAAGTCTCTACCA
* * *
2407151 CCA--C--CAACTCTATCACCT
1 CCACCCGTCAAGTCTCT-ACCA
2407169 CCACCCGTCAAGTCTCTACCA
1 CCACCCGTCAAGTCTCTACCA
2407190 CCACC
1 CCACC
2407195 AATACAATCT
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
17 7 0.21
18 6 0.18
19 1 0.03
20 1 0.03
21 11 0.33
22 7 0.21
ACGTcount: A:0.25, C:0.51, G:0.06, T:0.18
Consensus pattern (21 bp):
CCACCCGTCAAGTCTCTACCA
Found at i:2408161 original size:20 final size:21
Alignment explanation
Indices: 2408138--2408191 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 21
2408128 TGATGACTAA
2408138 AATAAAATAAATACATG-TA-T
1 AATAAAATAAATA-ATGATACT
2408158 AATAAAATAAAATAATGATACT
1 AATAAAAT-AAATAATGATACT
2408180 AATAATAATAAA
1 AATAA-AATAAA
2408192 ATTAGCAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
20 11 0.37
21 7 0.23
22 9 0.30
23 3 0.10
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (21 bp):
AATAAAATAAATAATGATACT
Found at i:2412662 original size:35 final size:35
Alignment explanation
Indices: 2412623--2412737 Score: 83
Period size: 35 Copynumber: 3.1 Consensus size: 35
2412613 TATAAGGACC
2412623 AAAATATAATTTAAACTATTGTAAACTAAAGATAG
1 AAAATATAATTTAAACTATTGTAAACTAAAGATAG
* * *
2412658 AAAATACAAATTATCATGAA-TTTTAGATATAGTA-TAAAGACA-
1 AAAATA-TAATT-T-A--AACTATT-G-TA-A--ACTAAAGATAG
*
2412700 AAAATATAATTTAACCTATTGTAAACTAAAGATAG
1 AAAATATAATTTAAACTATTGTAAACTAAAGATAG
2412735 AAA
1 AAA
2412738 TACAAGTTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 26
0.65 0.08 0.28
Matches are distributed among these distances:
33 1 0.02
34 7 0.12
35 10 0.17
36 6 0.10
37 3 0.05
38 4 0.07
39 4 0.07
40 4 0.07
41 6 0.10
42 7 0.12
43 7 0.12
44 1 0.02
ACGTcount: A:0.54, C:0.07, G:0.09, T:0.30
Consensus pattern (35 bp):
AAAATATAATTTAAACTATTGTAAACTAAAGATAG
Found at i:2412679 original size:77 final size:76
Alignment explanation
Indices: 2412593--2412747 Score: 265
Period size: 77 Copynumber: 2.0 Consensus size: 76
2412583 ATAAAACTAA
* *
2412593 ATCATGAATTTTAGATATAGTATAAGGACCAAAATATAATTTAAACTATTGTAAACTAAAGATAG
1 ATCATGAATTTTAGATATAGTATAAAGACAAAAATATAATTTAAACTATTGTAAACTAAAGATAG
2412658 AAAATACAAATT
66 -AAATACAAATT
*
2412670 ATCATGAATTTTAGATATAGTATAAAGACAAAAATATAATTTAACCTATTGTAAACTAAAGATAG
1 ATCATGAATTTTAGATATAGTATAAAGACAAAAATATAATTTAAACTATTGTAAACTAAAGATAG
*
2412735 AAATACAAGTT
66 AAATACAAATT
2412746 AT
1 AT
2412748 ATTTGGTAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
76 12 0.16
77 62 0.84
ACGTcount: A:0.50, C:0.08, G:0.10, T:0.32
Consensus pattern (76 bp):
ATCATGAATTTTAGATATAGTATAAAGACAAAAATATAATTTAAACTATTGTAAACTAAAGATAG
AAATACAAATT
Found at i:2414366 original size:42 final size:42
Alignment explanation
Indices: 2414312--2414392 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
2414302 CTCCACCCAC
*
2414312 ACCAGTGGATTCAACACCACAACATGTCCACTCCCCACCAAT
1 ACCAGTGCATTCAACACCACAACATGTCCACTCCCCACCAAT
* * * * *
2414354 ACCAGTGCATTCACCATCACCACTTGTCCACTCCGCACC
1 ACCAGTGCATTCAACACCACAACATGTCCACTCCCCACC
2414393 CCCACTAGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.28, C:0.43, G:0.10, T:0.19
Consensus pattern (42 bp):
ACCAGTGCATTCAACACCACAACATGTCCACTCCCCACCAAT
Found at i:2414878 original size:21 final size:21
Alignment explanation
Indices: 2414771--2414881 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
2414761 GCACCAACGT
2414771 ACTCACCATCACCACACA-TCC
1 ACTCACCATCACCAC-CAGTCC
* * * **
2414792 GCTCTCCATC-CGTACCAGAGC
1 ACTCACCATCAC-CACCAGTCC
*
2414813 ACTCACCATCACCACCTGTCC
1 ACTCACCATCACCACCAGTCC
* *
2414834 AATTCTCACC--CA-CACCAATGC
1 -A--CTCACCATCACCACCAGTCC
*
2414855 ACTCACCATCACCACCGGTCC
1 ACTCACCATCACCACCAGTCC
2414876 ACTCAC
1 ACTCAC
2414882 AACCCCAACT
Statistics
Matches: 64, Mismatches: 17, Indels: 18
0.65 0.17 0.18
Matches are distributed among these distances:
18 6 0.09
20 6 0.09
21 42 0.66
22 4 0.06
24 6 0.09
ACGTcount: A:0.27, C:0.49, G:0.07, T:0.17
Consensus pattern (21 bp):
ACTCACCATCACCACCAGTCC
Found at i:2414930 original size:21 final size:21
Alignment explanation
Indices: 2414887--2414933 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
2414877 CTCACAACCC
** * *
2414887 CAACTCGATCAGTCCCCATCT
1 CAACTCGATCACACCACACCT
2414908 CAACTCGATCACACCACACCT
1 CAACTCGATCACACCACACCT
2414929 CAACT
1 CAACT
2414934 AGCTCACTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.45, G:0.06, T:0.19
Consensus pattern (21 bp):
CAACTCGATCACACCACACCT
Found at i:2415176 original size:42 final size:41
Alignment explanation
Indices: 2414941--2416592 Score: 616
Period size: 42 Copynumber: 39.0 Consensus size: 41
2414931 ACTAGCTCAC
* * * * * *
2414941 TCACCACCACTACCCGTCCACCCCTCACCCCTACTAGAGCAT
1 TCACAACCACCACCCGTCCACTCTTCACCCC-ACCAGTGCAT
* * * * ** *
2414983 TCAGAACCACCAACCGTCCACACCTCACCCCCACCAAAGCGT
1 TCACAACCACCACCCGTCCACTCTTCA-CCCCACCAGTGCAT
* * * ** * * * *
2415025 TCACCACCATCATCCGTTTACACCTCACCTCCACCAGAGCAC
1 TCACAACCACCACCCGTCCACTCTTCACC-CCACCAGTGCAT
* * ** * *
2415067 TCA-ATACCACCACTCATCCACTCCACACCCCAACCAGAGCAC
1 TCACA-ACCACCACCCGTCCACTCTTCACCCC-ACCAGTGCAT
**** * *
2415109 TCACAACCACCATTAATCCAATCTTCAACCCCATCAGTGCAT
1 TCACAACCACCACCCGTCCACTCTTC-ACCCCACCAGTGCAT
* * *
2415151 TCACAACCACTACCCGTCCACTCTTCACCCCAACCAATACAT
1 TCACAACCACCACCCGTCCACTCTTCACCCC-ACCAGTGCAT
* * * * * * *
2415193 TCACCACCACTACTCATCCA-TACCTCACCCTCACCAGAGCAC
1 TCACAACCACCACCCGTCCACT-CTTCACCC-CACCAGTGCAT
* * * ** * * * *
2415235 TCAGAACCAACACCTGTTGACTCATCACCCCAAGCAGTACAC
1 TCACAACCACCACCCGTCCACTCTTCACCCC-ACCAGTGCAT
* * **
2415277 TCACAACCACCACCACCCGTCCACCCATCACCCCAACCAGAACACT
1 TCAC-A--ACCACCACCCGTCCACTCTTCACCCC-ACCAGTGCA-T
* * ** *
2415323 CACACAACCATCACCTATCCACTCATCACCCCCCACCAGTGCAT
1 -TCACAACCACCACCCGTCCACTCTTCA--CCCCACCAGTGCAT
* * * *
2415367 TCACCACCACCA-CCGATCCACTC-TCAACCCCCATCAGTACAC
1 TCACAACCACCACCCG-TCCACTCTTC-A-CCCCACCAGTGCAT
* * * *
2415409 TCACCACAATCACCCGTCCACT-TCCCACCACCACCAGTGCACT
1 TCACAACCACCACCCGTCCACTCT-TCACC-CCACCAGTGCA-T
* * * * * *
2415452 T-ACCATCACAACCTGTCCACTCCTCACCCCAACCAGAGCAT
1 TCACAACCACCACCCGTCCACTCTTCACCCC-ACCAGTGCAT
* * *** *
2415493 TTAGAACCACCACTTATCCACTCTTCACCCCCACCAGTGCAC
1 TCACAACCACCACCCGTCCACTCTTCA-CCCCACCAGTGCAT
* * * * *
2415535 TCACAATCACCACCTGCCCACTCTTCACCCCAAACAGTACACT
1 TCACAACCACCACCCGTCCACTCTTCACCCC-ACCAGTGCA-T
* **
2415578 T-ACAACCACCACCCGTTCACTCCTT-ACCCCCACCAAAGCAT
1 TCACAACCACCACCCGTCCACT-CTTCA-CCCCACCAGTGCAT
* * * *
2415619 TTATC-ACAACCACCCGTCCACTCTTCACCCCCACCAGAGCACA
1 TCA-CAACCACCACCCGTCCACTCTTCA-CCCCACCAGTGCA-T
* * * * * * *
2415662 T-AGAACAACCACTCGTCCATTCTTCACCCCAACTAGAGCAC
1 TCACAACCACCACCCGTCCACTCTTCACCCC-ACCAGTGCAT
* * * * * *
2415703 TCAGAACTACCACTCGTCCATTTTTCACCTCCACCAGAGCAT
1 TCACAACCACCACCCGTCCACTCTTCACC-CCACCAGTGCAT
* * * * * * *
2415745 TCAGAACCACTACCCGTCCACTCCTCAATCCAACCAGAGCAC
1 TCACAACCACCACCCGTCCACTCTTC-ACCCCACCAGTGCAT
* * *
2415787 TCAGAACCACCACCCGTTCACTCTTCACCCCAACCAGTGCAC
1 TCACAACCACCACCCGTCCACTCTTCACCCC-ACCAGTGCAT
* * * *
2415829 TCACAACCACCACACCGCCCACTCCTCACCACCACCAATACACT
1 TCACAACCACCAC-CCGTCCACTCTTCACC-CCACCAGTGCA-T
* ** * * * * *
2415873 TACTACCACCACCACCTATCCACTCATCACCTCTACTAGAGCAC
1 T-C-ACAACCACCACCCGTCCACTCTTCACC-CCACCAGTGCAT
* * * * *
2415917 TCAGAA-CATCCACTCATCCACTCTTCACCCCCACCCAGAGCAC
1 TCACAACCA-CCACCCGTCCACTCTTCA-CCCCA-CCAGTGCAT
* * * * *
2415960 TCAGAACCACCACCCATCTA-TGCCTCACCCCAACCAGAGCACT
1 TCACAACCACCACCCGTCCACT-CTTCACCCC-ACCAGTGCA-T
* * * ** *
2416003 T-AGAACCACCACCCATCCA-TGCCTCACCCCAACCAGAACAC
1 TCACAACCACCACCCGTCCACT-CTTCACCCC-ACCAGTGCAT
* * * * *
2416044 TCAGAACCACCATCCGTCCACTCTTCACCCCCACTAGCGCAC
1 TCACAACCACCACCCGTCCACTCTTCA-CCCCACCAGTGCAT
* ** * * * * * *
2416086 TCACCATTAACACCTGTTCACTCTCCACCCTTACCAGTGCAA
1 TCACAACCACCACCCGTCCACTCTTCACCC-CACCAGTGCAT
* * * * * * *
2416128 TCACCACTACAACCCGTCCACTCCTCACCTCAACCAGTACAC
1 TCACAACCACCACCCGTCCACTCTTCACC-CCACCAGTGCAT
* * *
2416170 TCACCACCACCACCCGTCCACTCTCCACCCCTACCAGTGCAC
1 TCACAACCACCACCCGTCCACTCTTCACCCC-ACCAGTGCAT
* * * *
2416212 TCACCACCACCACCCGTTCACTCTCCACCCCCCCACCAGTGCAC
1 TCACAACCACCACCCGTCCACTCTTCA---CCCCACCAGTGCAT
* * * * *
2416256 TCACCACCACCACCCCTCCACTCTCCACCCCCACCTGTGCAA
1 TCACAACCACCACCCGTCCACTCTTCA-CCCCACCAGTGCAT
* * * * *
2416298 TCACCACCACCACCACCTGTCCACTCTCCACCCCCTCCAGTTCAC
1 TCA-CA--ACCACCACCCGTCCACTCTTCA-CCCCACCAGTGCAT
* ** * * *
2416343 TCACCACCACCA-CCGTCCACTCCCCACCCCCTCCAGTTCAC
1 TCACAACCACCACCCGTCCACTCTTCA-CCCCACCAGTGCAT
* * ** * * *
2416384 TCACCACCACCACCGGTCCACTCCCCACCCCCTCCAGTTCAC
1 TCACAACCACCACCCGTCCACTCTTCA-CCCCACCAGTGCAT
* * ** * * *
2416426 TCACCACCACCACCGGTCCACTCCCCACCCCCTCCAGTTCAC
1 TCACAACCACCACCCGTCCACTCTTCA-CCCCACCAGTGCAT
* * ** * * *
2416468 TCACCACCACCACCGGTCCACTCCCCACCCCCTCCAGTTCAC
1 TCACAACCACCACCCGTCCACTCTTCA-CCCCACCAGTGCAT
* * *
2416510 TCACCACCACCACCCGTCCACTTTTCACCCCCACCAGTGCAC
1 TCACAACCACCACCCGTCCACTCTTCA-CCCCACCAGTGCAT
* * * * *
2416552 TCACCACCACCACCAGTCTACTCTCCCCCACCACCAGTGCA
1 TCACAACCACCACCCGTCCACTCTTCACC-CCACCAGTGCA
2416593 CTCCCCACCC
Statistics
Matches: 1290, Mismatches: 251, Indels: 138
0.77 0.15 0.08
Matches are distributed among these distances:
41 82 0.06
42 924 0.72
43 112 0.09
44 61 0.05
45 93 0.07
46 15 0.01
47 3 0.00
ACGTcount: A:0.27, C:0.50, G:0.07, T:0.16
Consensus pattern (41 bp):
TCACAACCACCACCCGTCCACTCTTCACCCCACCAGTGCAT
Found at i:2415312 original size:45 final size:44
Alignment explanation
Indices: 2415257--2415354 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
2415247 CCTGTTGACT
* * * *
2415257 CATCACCCCAAGCAGTACACTCACAACCACCACCACCCGTCCACC
1 CATCACCCCAACCAGAACACTCAC-ACAACCACCACCCATCCACC
* * *
2415302 CATCACCCCAACCAGAACACTCACACAACCATCACCTATCCACT
1 CATCACCCCAACCAGAACACTCACACAACCACCACCCATCCACC
2415346 CATCACCCC
1 CATCACCCC
2415355 CCACCAGTGC
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 24 0.52
45 22 0.48
ACGTcount: A:0.33, C:0.52, G:0.04, T:0.11
Consensus pattern (44 bp):
CATCACCCCAACCAGAACACTCACACAACCACCACCCATCCACC
Found at i:2415443 original size:21 final size:21
Alignment explanation
Indices: 2415355--2415472 Score: 62
Period size: 21 Copynumber: 5.6 Consensus size: 21
2415345 TCATCACCCC
*
2415355 CCACCAGTGCA-TTCACCACCA
1 CCACCAGTCCACTT-ACCACCA
* *
2415376 CCACC-GATCCACTCT-CAACCC
1 CCACCAG-TCCACT-TACCACCA
* * * *
2415397 CCATCAGTACACTCACCACAA
1 CCACCAGTCCACTTACCACCA
* * *
2415418 TCACCCGTCCACTTCCCACCA
1 CCACCAGTCCACTTACCACCA
* *
2415439 CCACCAGTGCACTTACCATCA
1 CCACCAGTCCACTTACCACCA
* *
2415460 CAACCTGTCCACT
1 CCACCAGTCCACT
2415473 CCTCACCCCA
Statistics
Matches: 68, Mismatches: 24, Indels: 10
0.67 0.24 0.10
Matches are distributed among these distances:
20 1 0.01
21 64 0.94
22 2 0.03
23 1 0.01
ACGTcount: A:0.27, C:0.49, G:0.07, T:0.17
Consensus pattern (21 bp):
CCACCAGTCCACTTACCACCA
Found at i:2415599 original size:84 final size:84
Alignment explanation
Indices: 2414938--2416595 Score: 935
Period size: 84 Copynumber: 19.6 Consensus size: 84
2414928 TCAACTAGCT
* * * * * * * *
2414938 CACTCACCACCACTACCCGTCCACCCCTCACCCCTACTAG-AGCATTCAGAACCACCAACCGTCC
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTA-CACTCACAACCACCACCCGTCC
* * **
2415002 ACACCTCACCCCCACCAAAG
65 ACTCTTCACCCCCACCAGTG
** * * ** * * * * *
2415022 CGTTCACCACCATCATCCGTTTACACCTCACCTCCACCAG-AGCACTCA-ATACCACCACTCATC
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTA-CACTCACA-ACCACCACCCGTC
** * *
2415085 CACTCCACACCCCAACCAGAG
64 CACTCTTCACCCCCACCAGTG
* **** * * * * * *
2415106 CACTCACAACCACCATTAATCCAATCTTCAACCCCATCAGTGCATTCACAACCACTACCCGTCCA
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTACACTCACAACCACCACCCGTCCA
* * *
2415171 CTCTTCACCCCAACCAATA
66 CTCTTCACCCCCACCAGTG
* * * * * * * * * *
2415190 CATTCACCACCACTACTCATCCA-TACCTCACCCTCACCAG-AGCACTCAGAACCAACACCTGTT
1 CACTCACCACCACCACCCGTCCACT-CTTCACCCCCACCAGTA-CACTCACAACCACCACCCGTC
* * * * *
2415253 GACTCATCACCCCAAGCAGTA
64 CACTCTTCACCCCCACCAGTG
* * * * * *
2415274 CACTCACAACCACCACCACCCGTCCACCCATCACCCCAACCAGAACACTCACACAACCATCACCT
1 CACT--C-ACCACCACCACCCGTCCACTCTTCACCCCCACCAGTACACT--CACAACCACCACCC
* *
2415339 ATCCACTCATCACCCCCCACCAGTG
61 GTCCACTCTTCA-CCCCCACCAGTG
* * * * *
2415364 CATTCACCACCACCA-CCGATCCACTC-TCAACCCCCATCAGTACACTCACCACAATCACCCGTC
1 CACTCACCACCACCACCCG-TCCACTCTTC-ACCCCCACCAGTACACTCACAACCACCACCCGTC
* *
2415427 CACT-TCCCACCACCACCAGTG
64 CACTCT-TCACCCCCACCAGTG
* * * * * * * * * ***
2415448 CACTTACCATCACAACCTGTCCACTCCTCACCCCAACCAG-AGCATTTAGAACCACCACTTATCC
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTA-CACTCACAACCACCACCCGTCC
2415512 ACTCTTCACCCCCACCAGTG
65 ACTCTTCACCCCCACCAGTG
* * * * * * * *
2415532 CACTCACAATCACCACCTGCCCACTCTTCACCCCAAACAGTACACTTACAACCACCACCCGTTCA
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTACACTCACAACCACCACCCGTCCA
**
2415597 CTCCTT-ACCCCCACCAAAG
66 CT-CTTCACCCCCACCAGTG
* * * * * * *
2415616 CATTTATCACAACCACCCGTCCACTCTTCACCCCCACCAG-AGCACAT-AGAACAACCACTCGTC
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTA-CAC-TCACAACCACCACCCGTC
* * * *
2415679 CATTCTTCACCCCAACTAGAG
64 CACTCTTCACCCCCACCAGTG
** * * * * * * * *
2415700 CACTCAGAACTACCACTCGTCCATTTTTCACCTCCACCAG-AGCATTCAGAACCACTACCCGTCC
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTA-CACTCACAACCACCACCCGTCC
* ** * *
2415764 ACTCCTCAATCCAACCAGAG
65 ACTCTTCACCCCCACCAGTG
** * * * *
2415784 CACTCAGAACCACCACCCGTTCACTCTTCACCCCAACCAGTGCACTCACAACCACCACACCGCCC
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTACACTCACAACCACCAC-CCGTCC
* * * *
2415849 ACTCCTCACCACCACCAATA
65 ACTCTTCACCCCCACCAGTG
** * * * * * *
2415869 CACTTACTACCACCACCACCTATCCACTCATCACCTCTACTAG-AGCACTCAGAA-CATCCACTC
1 CAC-T-C-ACCACCACCACCCGTCCACTCTTCACCCCCACCAGTA-CACTCACAACCA-CCACCC
* *
2415932 ATCCACTCTTCACCCCCACCCAGAG
61 GTCCACTCTTCACCCCCA-CCAGTG
** * * * * * * *
2415957 CACTCAGAACCACCACCCATCTA-TGCCTCACCCCAACCAG-AGCACTTAGAACCACCACCCATC
1 CACTCACCACCACCACCCGTCCACT-CTTCACCCCCACCAGTA-CACTCACAACCACCACCCGTC
* * **
2416020 CA-TGCCTCACCCCAACCAGAA
64 CACT-CTTCACCCCCACCAGTG
** * * ** * ** * * *
2416041 CACTCAGAACCACCATCCGTCCACTCTTCACCCCCACTAGCGCACTCACCATTAACACCTGTTCA
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTACACTCACAACCACCACCCGTCCA
* **
2416106 CTCTCCACCCTTACCAGTG
66 CTCTTCACCCCCACCAGTG
* * * * * * *
2416125 CAATCACCACTACAACCCGTCCACTCCTCACCTCAACCAGTACACTCACCACCACCACCCGTCCA
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTACACTCACAACCACCACCCGTCCA
* *
2416190 CTCTCCACCCCTACCAGTG
66 CTCTTCACCCCCACCAGTG
* * * * *
2416209 CACTCACCACCACCACCCGTTCACTCTCCACCCCCCCACCAGTGCACTCACCACCACCACCCCTC
1 CACTCACCACCACCACCCGTCCACTCTTCA--CCCCCACCAGTACACTCACAACCACCACCCGTC
* *
2416274 CACTCTCCACCCCCACCTGTG
64 CACTCTTCACCCCCACCAGTG
* * * * *
2416295 CAATCACCACCACCACCACCTGTCCACTCTCCACCCCCTCCAGTTCACTCACCACCACCA-CCGT
1 CACTCACCACCACCA-C-CC-GTCCACTCTTCACCCCCACCAGTACACTCACAACCACCACCCGT
** * *
2416359 CCACTCCCCACCCCCTCCAGTT
63 CCACTCTTCACCCCCACCAGTG
* ** * * * *
2416381 CACTCACCACCACCACCGGTCCACTCCCCACCCCCTCCAGTTCACTCACCACCACCACCGGTCCA
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTACACTCACAACCACCACCCGTCCA
** * *
2416446 CTCCCCACCCCCTCCAGTT
66 CTCTTCACCCCCACCAGTG
* ** * * *
2416465 CACTCACCACCACCACCGGTCCACTCCCCACCCCCTCCAGTTCACTCACCACCACCACCCGTCCA
1 CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTACACTCACAACCACCACCCGTCCA
*
2416530 CTTTTCACCCCCACCAGTG
66 CTCTTCACCCCCACCAGTG
* * * *
2416549 CACTCACCACCACCACCAGTCTACTC-TCCCCCACCACCAGTGCACTC
1 CACTCACCACCACCACCCGTCCACTCTTCACCC-CCACCAGTACACTC
2416596 CCCACCCCCA
Statistics
Matches: 1239, Mismatches: 288, Indels: 94
0.76 0.18 0.06
Matches are distributed among these distances:
83 50 0.04
84 776 0.63
85 108 0.09
86 107 0.09
87 106 0.09
88 48 0.04
89 32 0.03
90 12 0.01
ACGTcount: A:0.27, C:0.50, G:0.07, T:0.16
Consensus pattern (84 bp):
CACTCACCACCACCACCCGTCCACTCTTCACCCCCACCAGTACACTCACAACCACCACCCGTCCA
CTCTTCACCCCCACCAGTG
Found at i:2415903 original size:21 final size:21
Alignment explanation
Indices: 2415847--2415903 Score: 51
Period size: 24 Copynumber: 2.6 Consensus size: 21
2415837 ACCACACCGC
*
2415847 CCACTCCTCACCACCACCAAT
1 CCACTCATCACCACCACCAAT
* * *
2415868 ACACTTACTACCACCACCACCTAT
1 CCAC-T-C-ATCACCACCACCAAT
2415892 CCACTCATCACC
1 CCACTCATCACC
2415904 TCTACTAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
21 8 0.30
22 2 0.07
23 2 0.07
24 15 0.56
ACGTcount: A:0.30, C:0.53, G:0.00, T:0.18
Consensus pattern (21 bp):
CCACTCATCACCACCACCAAT
Found at i:2416601 original size:84 final size:84
Alignment explanation
Indices: 2415282--2416742 Score: 632
Period size: 84 Copynumber: 17.2 Consensus size: 84
2415272 TACACTCACA
* * * * ** * **
2415282 ACCACCACCACCCGTCCACCCAT-CACCCCAACCAGAACACTCACACAACCATCACCTATCCACT
1 ACCACCACCACCAGTCCACTC-TCCCCCCCCACCAGTTCACTCAC-C-ACCACCACCCGTCCACT
*
2415346 CAT-CACCCCCCACCAGTGCATTC
63 C-TCCA-CCCCCACCAGTGCACTC
** * * * *
2415369 ACCACCACCACC-GATCCACTCTCAACCCCCATCAGTACACTCACCACAATCACCCGTCCACT-T
1 ACCACCACCACCAG-TCCACTCTCCCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACTCT
* *
2415432 CCCACCACCACCAGTGCACTT
65 -CCACCCCCACCAGTGCACTC
* * * * * ** * * ** ***
2415453 ACCATCACAACCTGTCCACTC-CTCACCCCAACCAGAGCATTTAGAACCACCACTTATCCACTCT
1 ACCACCACCACCAGTCCACTCTC-CCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACTCT
*
2415517 TCACCCCCACCAGTGCACTC
65 CCACCCCCACCAGTGCACTC
* * * * * * * * * * * *
2415537 ACAATCACCACCTGCCCACTCTTCACCCCAAACAGTACACTTACAACCACCACCCGTTCACTC-C
1 ACCACCACCACCAGTCCACTCTCCCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACTCTC
* ** * *
2415601 TTACCCCCACCAAAGCATTT
66 -CACCCCCACCAGTGCACTC
* * * * * ** ** * * *
2415621 ATCACAACCACCCGTCCACTCTTCACCCCCACCAGAGCACAT-AGAACAACCACTCGTCCATTCT
1 ACCACCACCACCAGTCCACTCTCCCCCCCCACCAGTTCAC-TCACCACCACCACCCGTCCACTCT
* * * *
2415685 TCACCCCAACTAGAGCACTC
65 CCACCCCCACCAGTGCACTC
** * * * * * * ** * ** *
2415705 AGAACTACCACTC-GTCCATTTTTCACCTCCACCAGAGCATTCAGAACCACTACCCGTCCACTC-
1 ACCACCACCAC-CAGTCCACTCTCCCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACTCT
** * *
2415768 CTCAATCCAACCAGAGCACTC
65 C-CACCCCCACCAGTGCACTC
** * * * * * * * *
2415789 AGAACCACCACCCGTTCACTCTTCACCCCAACCAGTGCACTCACAACCACCACACCGCCCACTC-
1 ACCACCACCACCAGTCCACTCTCCCCCCCCACCAGTTCACTCACCACCACCAC-CCGTCCACTCT
* * *
2415853 CTCACCACCACCAATACACTTAC
65 C-CACCCCCACCAGTGCAC-T-C
* * * * ** * * * *
2415876 TACCACCACCACCTA-TCCACTCAT-CACCTCTACTAGAGCACTCA-GAACATCCACTCATCCAC
1 -ACCACCACCACC-AGTCCACTC-TCCCCCCCCACCAGTTCACTCACCACCA-CCACCCGTCCAC
* *
2415938 TCTTCACCCCCACCCAGAGCACTC
62 TCTCCACCCCCA-CCAGTGCACTC
** * * * ** * ** *
2415962 AGAACCACCACCCA-TCTA-TGC-CTCACCCCAACCAGAGCACTTAGAACCACCACCCATCCA-T
1 ACCACCACCA-CCAGTCCACT-CTC-CCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACT
* **
2416023 GC-CTCACCCCAACCAGAACACTC
63 -CTC-CACCCCCACCAGTGCACTC
** * * * ** ** * * *
2416046 AGAACCACCATCC-GTCCACTCTTCACCCCCACTAGCGCACTCACCATTAACACCTGTTCACTCT
1 ACCACCACCA-CCAGTCCACTCTCCCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACTCT
** *
2416110 CCACCCTTACCAGTGCAATC
65 CCACCCCCACCAGTGCACTC
* * * * * * *
2416130 ACCACTACAACCCGTCCACTC-CTCACCTCAACCAGTACACTCACCACCACCACCCGTCCACTCT
1 ACCACCACCACCAGTCCACTCTC-CCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACTCT
*
2416194 CCACCCCTACCAGTGCACTC
65 CCACCCCCACCAGTGCACTC
* * * *
2416214 ACCACCACCACCCGTTCACTCTCCACCCCCCCACCAGTGCACTCACCACCACCACCCCTCCACTC
1 ACCACCACCACCAGTCCACTCT-C-CCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACTC
* *
2416279 TCCACCCCCACCTGTGCAATC
64 TCCACCCCCACCAGTGCACTC
* *
2416300 ACCACCACCACCACCTGTCCACTCTCCACCCCCTCCAGTTCACTCACCACCACCA-CCGTCCACT
1 ACCACCACCACCA---GTCCACTCTCCCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACT
* * *
2416364 CCCCACCCCCTCCAGTTCACTC
63 CTCCACCCCCACCAGTGCACTC
* * * *
2416386 ACCACCACCACCGGTCCACTC-CCCACCCCCTCCAGTTCACTCACCACCACCACCGGTCCACTCC
1 ACCACCACCACCAGTCCACTCTCCC-CCCCCACCAGTTCACTCACCACCACCACCCGTCCACTCT
* *
2416450 CCACCCCCTCCAGTTCACTC
65 CCACCCCCACCAGTGCACTC
* * *
2416470 ACCACCACCACCGGTCCACTC-CCCACCCCCTCCAGTTCACTCACCACCACCACCCGTCCACTTT
1 ACCACCACCACCAGTCCACTCTCCC-CCCCCACCAGTTCACTCACCACCACCACCCGTCCACTCT
*
2416534 TCACCCCCACCAGTGCACTC
65 CCACCCCCACCAGTGCACTC
* * * * * * ** * *
2416554 ACCACCACCACCAGTCTACTCTCCCCCACCACCAGTGCACTCCCCACCCCCACCAGTGTACCCAC
1 ACCACCACCACCAGTCCACTCTCCCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACTCTC
* * * *
2416619 CACCACTACCCGTCCACTC
66 CACCCCCACCAGTGCACTC
* * * * * * * * * * * *
2416638 CCCACC-CTCACCAGTGCACTCACCACCACCACCCGTCCACTCCCCACCGCCACCAGTGCACTCA
1 ACCACCAC-CACCAGTCCACTCTCCCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACTCT
* * *
2416702 CCACCACCACCCGTCCACTC
65 CCACCCCCACCAGTGCACTC
* *
2416722 TCCACCCCCACCAAGT-CACTC
1 ACCACCACCACC-AGTCCACTC
2416743 ACCAGTACCA
Statistics
Matches: 1091, Mismatches: 234, Indels: 101
0.77 0.16 0.07
Matches are distributed among these distances:
82 2 0.00
83 42 0.04
84 704 0.65
85 98 0.09
86 113 0.10
87 80 0.07
88 43 0.04
89 9 0.01
ACGTcount: A:0.26, C:0.52, G:0.07, T:0.16
Consensus pattern (84 bp):
ACCACCACCACCAGTCCACTCTCCCCCCCCACCAGTTCACTCACCACCACCACCCGTCCACTCTC
CACCCCCACCAGTGCACTC
Found at i:2416732 original size:21 final size:21
Alignment explanation
Indices: 2416185--2416746 Score: 446
Period size: 21 Copynumber: 26.6 Consensus size: 21
2416175 ACCACCACCC
* *
2416185 GTCCACTCTCCACCCCTACCA
1 GTCCACTCACCACCCCCACCA
* * *
2416206 GTGCACTCACCACCACCACCC
1 GTCCACTCACCACCCCCACCA
* *
2416227 GTTCACTCTCCACCCCCCCACCA
1 GTCCACTCACCA--CCCCCACCA
* * *
2416250 GTGCACTCACCACCACCACCC
1 GTCCACTCACCACCCCCACCA
* * *
2416271 CTCCACTCTCCACCCCCACCT
1 GTCCACTCACCACCCCCACCA
* * *
2416292 GTGCAATCACCACCACCACCACCT
1 GTCCACTCACCA-C-CC-CCACCA
* *
2416316 GTCCACTCTCCACCCCCTCCA
1 GTCCACTCACCACCCCCACCA
* *
2416337 GTTCACTCACCACCACCACC-
1 GTCCACTCACCACCCCCACCA
* *
2416357 GTCCACTCCCCACCCCCTCCA
1 GTCCACTCACCACCCCCACCA
* * *
2416378 GTTCACTCACCACCACCACCG
1 GTCCACTCACCACCCCCACCA
* *
2416399 GTCCACTCCCCACCCCCTCCA
1 GTCCACTCACCACCCCCACCA
* * *
2416420 GTTCACTCACCACCACCACCG
1 GTCCACTCACCACCCCCACCA
* *
2416441 GTCCACTCCCCACCCCCTCCA
1 GTCCACTCACCACCCCCACCA
* * *
2416462 GTTCACTCACCACCACCACCG
1 GTCCACTCACCACCCCCACCA
* *
2416483 GTCCACTCCCCACCCCCTCCA
1 GTCCACTCACCACCCCCACCA
* * *
2416504 GTTCACTCACCACCACCACCC
1 GTCCACTCACCACCCCCACCA
***
2416525 GTCCACTTTTCACCCCCACCA
1 GTCCACTCACCACCCCCACCA
* *
2416546 GTGCACTCACCACCACCACCA
1 GTCCACTCACCACCCCCACCA
* *
2416567 GTCTACTCTCC-CCCACCACCA
1 GTCCACTCACCACCC-CCACCA
* *
2416588 GTGCACTCCCCACCCCCACCA
1 GTCCACTCACCACCCCCACCA
** * * * *
2416609 GTGTACCCACCACCACTACCC
1 GTCCACTCACCACCCCCACCA
* *
2416630 GTCCACTCCCCACCCTCACCA
1 GTCCACTCACCACCCCCACCA
* * *
2416651 GTGCACTCACCACCACCACCC
1 GTCCACTCACCACCCCCACCA
* *
2416672 GTCCACTCCCCACCGCCACCA
1 GTCCACTCACCACCCCCACCA
* * *
2416693 GTGCACTCACCACCACCACCC
1 GTCCACTCACCACCCCCACCA
*
2416714 GTCCACTCTCCACCCCCACCAA
1 GTCCACTCACCACCCCCACC-A
2416736 GT-CACTCACCA
1 GTCCACTCACCA
2416747 GTACCACCAC
Statistics
Matches: 412, Mismatches: 120, Indels: 18
0.75 0.22 0.03
Matches are distributed among these distances:
20 18 0.04
21 351 0.85
22 8 0.02
23 20 0.05
24 15 0.04
ACGTcount: A:0.21, C:0.58, G:0.07, T:0.14
Consensus pattern (21 bp):
GTCCACTCACCACCCCCACCA
Found at i:2416867 original size:22 final size:22
Alignment explanation
Indices: 2416837--2416883 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
2416827 GTGCACTCCT
*
2416837 ACCCCCCACCAATACACTCATC
1 ACCCACCACCAATACACTCATC
* * *
2416859 ACCCACCACCTATCCATTCATC
1 ACCCACCACCAATACACTCATC
2416881 ACC
1 ACC
2416884 TCCACCCATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.53, G:0.00, T:0.17
Consensus pattern (22 bp):
ACCCACCACCAATACACTCATC
Found at i:2416908 original size:42 final size:42
Alignment explanation
Indices: 2416861--2416991 Score: 103
Period size: 42 Copynumber: 3.2 Consensus size: 42
2416851 CACTCATCAC
2416861 CCACCACCTATCCATTCATCACCTCCACCCATCAAATCTCTA
1 CCACCACCTATCCATTCATCACCTCCACCCATCAAATCTCTA
* * * * *
2416903 CCACCACCAATACAATC-TCGACCTCCA--C--CAACTCTATCA
1 CCACCACCTATCCATTCATC-ACCTCCACCCATCAAATCTCT-A
* * * * *
2416942 CCACCA-CTCGTCCATTCACCAACTTCACCCATCAAGTCTCTA
1 CCACCACCT-ATCCATTCATCACCTCCACCCATCAAATCTCTA
2416984 CCACCACC
1 CCACCACC
2416992 AGTACAATCC
Statistics
Matches: 66, Mismatches: 14, Indels: 17
0.68 0.14 0.18
Matches are distributed among these distances:
38 8 0.12
39 17 0.26
40 2 0.03
41 3 0.05
42 28 0.42
43 8 0.12
ACGTcount: A:0.29, C:0.48, G:0.02, T:0.21
Consensus pattern (42 bp):
CCACCACCTATCCATTCATCACCTCCACCCATCAAATCTCTA
Found at i:2416958 original size:81 final size:81
Alignment explanation
Indices: 2416871--2417029 Score: 246
Period size: 81 Copynumber: 2.0 Consensus size: 81
2416861 CCACCACCTA
* * * *
2416871 TCCATTCATCACCTCCACCCATCAAATCTCTACCACCACCAATACAATCTCGACCTCCACCAACT
1 TCCATTCACCAACTCCACCCATCAAATCTCTACCACCACCAATACAATCCCAACCTCCACCAACT
2416936 CTATCACCACCACTCG
66 CTATCACCACCACTCG
* * *
2416952 TCCATTCACCAACTTCACCCATCAAGTCTCTACCACCACCAGTACAATCCCAACCTCCACCAACT
1 TCCATTCACCAACTCCACCCATCAAATCTCTACCACCACCAATACAATCCCAACCTCCACCAACT
*
2417017 CTATCACCTCCAC
66 CTATCACCACCAC
2417030 CTGTAAGGTC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.30, C:0.47, G:0.03, T:0.21
Consensus pattern (81 bp):
TCCATTCACCAACTCCACCCATCAAATCTCTACCACCACCAATACAATCCCAACCTCCACCAACT
CTATCACCACCACTCG
Found at i:2417019 original size:36 final size:36
Alignment explanation
Indices: 2416898--2417024 Score: 92
Period size: 36 Copynumber: 3.3 Consensus size: 36
2416888 CCCATCAAAT
* * *
2416898 CTCTACCACCACCAATACAATCTCGACCTCCACCAA
1 CTCTACCACCACCAGTACAATCCCAACCTCCACCAA
* * * * *
2416934 CTCTATCACCACCACTCGTCCATTCACCAACTTCACCCATCAA
1 CTCTACCACCACCA---GTACAATC-CCAAC--C-TCCACCAA
2416977 GTCTCTACCACCACCAGTACAATCCCAACCTCCACCAA
1 --CTCTACCACCACCAGTACAATCCCAACCTCCACCAA
*
2417015 CTCTATCACC
1 CTCTACCACC
2417025 TCCACCTGTA
Statistics
Matches: 68, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
36 22 0.32
38 6 0.09
39 6 0.09
40 3 0.04
41 5 0.07
42 7 0.10
43 6 0.09
45 13 0.19
ACGTcount: A:0.30, C:0.47, G:0.03, T:0.20
Consensus pattern (36 bp):
CTCTACCACCACCAGTACAATCCCAACCTCCACCAA
Found at i:2417043 original size:60 final size:60
Alignment explanation
Indices: 2416967--2417327 Score: 373
Period size: 60 Copynumber: 6.0 Consensus size: 60
2416957 TCACCAACTT
* * *
2416967 CACCCATCAAGTCTCTACCACCACCAGTACAATCCCAACCTCCACCAACTCTATCACCTC
1 CACCCGTCAGGTCTCTACCACCACCAATACAATCCCAACCTCCACCAACTCTATCACCTC
* * * * * * *
2417027 CACCTGTAAGGTCTCTACCTCCACCAATACAAT-CTAGACATTCACCAACTTTATCACCTC
1 CACCCGTCAGGTCTCTACCACCACCAATACAATCCCA-ACCTCCACCAACTCTATCACCTC
* * *
2417087 CACCCATCAGGTCTATACCACCACCAATACAATCCCAACTTCCACCAACTCTATCACCTC
1 CACCCGTCAGGTCTCTACCACCACCAATACAATCCCAACCTCCACCAACTCTATCACCTC
* * * * * * **
2417147 CACACGTCAGGTCTTTATCACCACCAACACAATCCCAACCTCCCCCAACTCAATCACCAA
1 CACCCGTCAGGTCTCTACCACCACCAATACAATCCCAACCTCCACCAACTCTATCACCTC
* * * * * *
2417207 AACCCGTCAGGTCTCTATCACCACCAGTACAATCTCGACCTTCACCAACTCTATCACCTC
1 CACCCGTCAGGTCTCTACCACCACCAATACAATCCCAACCTCCACCAACTCTATCACCTC
* * * * * * * * * *
2417267 AACCCGTCAAGCCTTTATCACCCCCAGTACAATCCCGACCTTCATCAACTCTATCACCTC
1 CACCCGTCAGGTCTCTACCACCACCAATACAATCCCAACCTCCACCAACTCTATCACCTC
2417327 C
1 C
2417328 TCCTATTTTG
Statistics
Matches: 251, Mismatches: 48, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
59 2 0.01
60 247 0.98
61 2 0.01
ACGTcount: A:0.30, C:0.43, G:0.06, T:0.21
Consensus pattern (60 bp):
CACCCGTCAGGTCTCTACCACCACCAATACAATCCCAACCTCCACCAACTCTATCACCTC
Found at i:2417240 original size:180 final size:180
Alignment explanation
Indices: 2416985--2417327 Score: 445
Period size: 180 Copynumber: 1.9 Consensus size: 180
2416975 AAGTCTCTAC
** * *** * *
2416985 CACCACCAGTACAATCCCAACCTCCACCAACTCTATCACCTCCACCTGTAAGGTCTCTACCTCCA
1 CACCACCAACACAATCCCAACCTCCACCAACTCAATCACCAAAACCCGTAAGGTCTCTACCACCA
* * * *
2417050 CCAATACAATCTAGACATTCACCAACTTTATCACCTCCACCCATCAGGTCTATACCACCACCAAT
66 CCAATACAATCTAGACATTCACCAACTCTATCACCTCAACCCATCAAGCCTATACCACCACCAAT
2417115 ACAATCCC-AACTTCCACCAACTCTATCACCTCCACACGTCAGGTCTTTAT
131 ACAATCCCGAACTT-CACCAACTCTATCACCTCCACACGTCAGGTCTTTAT
* * *
2417165 CACCACCAACACAATCCCAACCTCCCCCAACTCAATCACCAAAACCCGTCAGGTCTCTATCACCA
1 CACCACCAACACAATCCCAACCTCCACCAACTCAATCACCAAAACCCGTAAGGTCTCTACCACCA
* * * * * * * *
2417230 CCAGTACAATCTCGACCTTCACCAACTCTATCACCTCAACCCGTCAAGCCTTTATCACCCCCAGT
66 CCAATACAATCTAGACATTCACCAACTCTATCACCTCAACCCATCAAGCCTATACCACCACCAAT
* *
2417295 ACAATCCCGACCTTCATCAACTCTATCACCTCC
131 ACAATCCCGAACTTCACCAACTCTATCACCTCC
2417328 TCCTATTTTG
Statistics
Matches: 137, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
180 133 0.97
181 4 0.03
ACGTcount: A:0.30, C:0.43, G:0.06, T:0.21
Consensus pattern (180 bp):
CACCACCAACACAATCCCAACCTCCACCAACTCAATCACCAAAACCCGTAAGGTCTCTACCACCA
CCAATACAATCTAGACATTCACCAACTCTATCACCTCAACCCATCAAGCCTATACCACCACCAAT
ACAATCCCGAACTTCACCAACTCTATCACCTCCACACGTCAGGTCTTTAT
Found at i:2419272 original size:30 final size:30
Alignment explanation
Indices: 2419214--2419457 Score: 219
Period size: 30 Copynumber: 8.1 Consensus size: 30
2419204 CCCAGTAGGT
* * *
2419214 CCCTGAACTT-TCCATAAATCATATTTTGAC
1 CCCTAAACTTCTCCA-AAATTACATTTTGAC
*
2419244 CCCTAATCTTCTCCAAAATTACATTTTGAC
1 CCCTAAACTTCTCCAAAATTACATTTTGAC
* * * *
2419274 CTCTAAACTTTTCCAAAATTACATTTTAAA
1 CCCTAAACTTCTCCAAAATTACATTTTGAC
* *
2419304 CCCTAAACTTCTCCAAAATTACATTTTAAT
1 CCCTAAACTTCTCCAAAATTACATTTTGAC
* *
2419334 CCTTAAATCTT-TCTAAAATTACATTTTGAC
1 CCCTAAA-CTTCTCCAAAATTACATTTTGAC
* * **
2419364 CTCTCAAACTTCTCCAAAATCATGTTTTGA-
1 CCCT-AAACTTCTCCAAAATTACATTTTGAC
* *
2419394 CCCTCAATCCTTC-CCAAAAATCACATTTTGA-
1 CCCT-AA-ACTTCTCC-AAAATTACATTTTGAC
* *
2419425 CCCTAAACTTCTCTAAAATCACATTTTGAC
1 CCCTAAACTTCTCCAAAATTACATTTTGAC
2419455 CCC
1 CCC
2419458 GTATTCTTCG
Statistics
Matches: 178, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
29 19 0.11
30 114 0.64
31 45 0.25
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.36
Consensus pattern (30 bp):
CCCTAAACTTCTCCAAAATTACATTTTGAC
Found at i:2419440 original size:91 final size:90
Alignment explanation
Indices: 2419214--2419455 Score: 262
Period size: 90 Copynumber: 2.7 Consensus size: 90
2419204 CCCAGTAGGT
* * * *
2419214 CCCTGAACTT-TCCATAAATCATATTTTGACCCCTAATCTTCTCCAAAATTACATTTTGACCTCT
1 CCCTAAACTTCTCCA-AAATCACATTTTGACCCCTAAACTTCTCTAAAATTACATTTTGACCTCT
*
2419278 AAACTTTTCCAAAATTACATTTTAAA
65 AAACTTCTCCAAAATTACATTTTAAA
* * * *
2419304 CCCTAAACTTCTCCAAAATTACATTTTAATCCTTAAATCTT-TCTAAAATTACATTTTGACCTCT
1 CCCTAAACTTCTCCAAAATCACATTTTGACCCCTAAA-CTTCTCTAAAATTACATTTTGACCTCT
**
2419368 CAAACTTCTCCAAAA-T-CATGTTTTGA
65 -AAACTTCTCCAAAATTACAT-TTTAAA
* *
2419394 CCCTCAATCCTTC-CCAAAAATCACATTTTGA-CCCTAAACTTCTCTAAAATCACATTTTGACC
1 CCCT-AA-ACTTCTCC-AAAATCACATTTTGACCCCTAAACTTCTCTAAAATTACATTTTGACC
2419456 CCGTATTCTT
Statistics
Matches: 128, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
89 3 0.02
90 59 0.46
91 49 0.38
92 17 0.13
ACGTcount: A:0.33, C:0.27, G:0.03, T:0.36
Consensus pattern (90 bp):
CCCTAAACTTCTCCAAAATCACATTTTGACCCCTAAACTTCTCTAAAATTACATTTTGACCTCTA
AACTTCTCCAAAATTACATTTTAAA
Found at i:2427802 original size:39 final size:38
Alignment explanation
Indices: 2427740--2428466 Score: 290
Period size: 39 Copynumber: 18.7 Consensus size: 38
2427730 AAAGATTCTA
* * *
2427740 ATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATCCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATT-CAGCCATCCG
*
2427779 ATCTTTAACCCCGAGCTTGGGGCAGATTGCAGCCATCCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATT-CAGCCATCCG
* * * *
2427818 ATCTTTTACCCCAAGCTTGGAGCAGA-TCA-CTATCAGTCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATTCAGCCATC---CG
* * *
2427857 ATCTCTTACCTCGAGCCTGGGGCAGATTACAGCCATCCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATT-CAGCCATCCG
** *
2427896 ATCTTTTACCCTAAGCTTGGGGCAGA-TCA-CCATCAGCCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATTCAGCCAT---CCG
* * * * *
2427935 ATCTCTTACCCCGAGCCTGAGGTAGATTGCAGTCATCCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATT-CAGCCATCCG
* * * * * * *
2427974 ATTTTTTACCTCGCGCTTCGGGCAGA-TCAACATCAGCCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATTCAGC--CATCCG
* * *
2428013 ATCTCTTGCCTCGAGCTTGGGGCAGATTACAGCCATCCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATT-CAGCCATCCG
* * * *
2428052 ATCTTTTACCCCGAGCTTGGGACATA-TCA-CTATCGGCCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATTCAGCCAT---CCG
* * * * * * * *
2428091 ATCTCTTACCTCGAGCCTGAGGTA-AGTCA-CTATCGACTA
1 ATCTTTTACCCCGAGCTTGGGGCAGATTCAGCCATC--C-G
* * * * * *
2428130 ATCTCTTACCCCGAGCCT-AGGTACATTGTAGCCATCCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATT-CAGCCATCCG
* * *
2428168 ATCTTTTACCTCGAGCTTGAGGCAGA-TCA-CCATCAACCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATTCAGCCAT---CCG
* * ** * *
2428207 ATCTCTTACCCCGAGCCTGGGATAGATTGCAGTCATTCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATT-CAGCCATCCG
* * *
2428246 A-----TACCCCGAGCTTGGGGCATA-TCA-CTATCAACCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATTCAGC---CATCCG
*
2428280 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATCCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATT-CAGCCATCCG
* * * *
2428319 ATCTTTTACCCCGAGCCTAGGGTAGA-TCA-CCATCAGCCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATTCAGCCAT---CCG
* * * * * *
2428358 ATTTTTTACCCCGAGCTTAGGGTAAATTACAACCATTCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATT-CAGCCATCCG
* * * *
2428397 ATCTTTTACCCCGATCATGGGGCAGATTGAAGACATCATCCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATT-CAG-C--CATCCG
* * *
2428439 ATCTCTTACCCCGATCATGGGGCAGATT
1 ATCTTTTACCCCGAGCTTGGGGCAGATT
2428467 GCAATCATCT
Statistics
Matches: 518, Mismatches: 117, Indels: 103
0.70 0.16 0.14
Matches are distributed among these distances:
32 2 0.00
33 1 0.00
34 20 0.04
36 20 0.04
37 11 0.02
38 28 0.05
39 365 0.70
40 8 0.02
41 17 0.03
42 46 0.09
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (38 bp):
ATCTTTTACCCCGAGCTTGGGGCAGATTCAGCCATCCG
Found at i:2427878 original size:78 final size:77
Alignment explanation
Indices: 2427790--2428109 Score: 417
Period size: 78 Copynumber: 4.1 Consensus size: 77
2427780 TCTTTAACCC
* * *
2427790 CGAGCTTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCAAGCTTGGAGCAGATCACTATCAGT
1 CGAGCCTGGGGCAGATTACAGCCATCCGATCTTTTACCCCAAGCTTGG-GCAGATCACTATCAGC
2427855 CAATCTCTTACCT
65 CAATCTCTTACCT
* *
2427868 CGAGCCTGGGGCAGATTACAGCCATCCGATCTTTTACCCTAAGCTTGGGGCAGATCACCATCAGC
1 CGAGCCTGGGGCAGATTACAGCCATCCGATCTTTTACCCCAAGCTT-GGGCAGATCACTATCAGC
*
2427933 CAATCTCTTACCC
65 CAATCTCTTACCT
* * * * * * **
2427946 CGAGCCTGAGGTAGATTGCAGTCATCCGATTTTTTACCTCGCGCTTCGGGCAGATCAAC-ATCAG
1 CGAGCCTGGGGCAGATTACAGCCATCCGATCTTTTACCCCAAGCTT-GGGCAGATC-ACTATCAG
*
2428010 CCAATCTCTTGCCT
64 CCAATCTCTTACCT
* * * *
2428024 CGAGCTTGGGGCAGATTACAGCCATCCGATCTTTTACCCCGAGCTTGGGACATATCACTATCGGC
1 CGAGCCTGGGGCAGATTACAGCCATCCGATCTTTTACCCCAAGCTTGGG-CAGATCACTATCAGC
2428089 CAATCTCTTACCT
65 CAATCTCTTACCT
2428102 CGAGCCTG
1 CGAGCCTG
2428110 AGGTAAGTCA
Statistics
Matches: 208, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
77 5 0.02
78 199 0.96
79 4 0.02
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (77 bp):
CGAGCCTGGGGCAGATTACAGCCATCCGATCTTTTACCCCAAGCTTGGGCAGATCACTATCAGCC
AATCTCTTACCT
Found at i:2428034 original size:156 final size:156
Alignment explanation
Indices: 2427786--2428114 Score: 464
Period size: 156 Copynumber: 2.1 Consensus size: 156
2427776 CCGATCTTTA
* * *
2427786 ACCCCGAGCTTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCAAGCTTGGAGCAGATCACTAT
1 ACCCCGAGCCTGAGGTAGATTGCAGCCATCCGATCTTTTACCCCAAGCTTGGAGCAGATCACTAT
* *
2427851 CAGTCAATCTCTTACCTCGAGCCTGGGGCAGATTACAGCCATCCGATCTTTTACCCTAAGCTTGG
66 CAGCCAATCTCTTACCTCGAGCCTGGGGCAGATTACAGCCATCCGATCTTTTACCCCAAGCTTGG
*
2427916 GGCAGATCACCATCAGCCAATCTCTT
131 GACAGATCACCATCAGCCAATCTCTT
* * * **
2427942 ACCCCGAGCCTGAGGTAGATTGCAGTCATCCGATTTTTTACCTCGCGCTTCGG-GCAGATCAAC-
1 ACCCCGAGCCTGAGGTAGATTGCAGCCATCCGATCTTTTACCCCAAGCTT-GGAGCAGATC-ACT
* * *
2428005 ATCAGCCAATCTCTTGCCTCGAGCTTGGGGCAGATTACAGCCATCCGATCTTTTACCCCGAGCTT
64 ATCAGCCAATCTCTTACCTCGAGCCTGGGGCAGATTACAGCCATCCGATCTTTTACCCCAAGCTT
* * *
2428070 GGGACATATCACTATCGGCCAATCTCTT
129 GGGACAGATCACCATCAGCCAATCTCTT
*
2428098 ACCTCGAGCCTGAGGTA
1 ACCCCGAGCCTGAGGTA
2428115 AGTCACTATC
Statistics
Matches: 153, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
156 149 0.97
157 4 0.03
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (156 bp):
ACCCCGAGCCTGAGGTAGATTGCAGCCATCCGATCTTTTACCCCAAGCTTGGAGCAGATCACTAT
CAGCCAATCTCTTACCTCGAGCCTGGGGCAGATTACAGCCATCCGATCTTTTACCCCAAGCTTGG
GACAGATCACCATCAGCCAATCTCTT
Found at i:2428210 original size:194 final size:190
Alignment explanation
Indices: 2427934--2428295 Score: 485
Period size: 194 Copynumber: 1.9 Consensus size: 190
2427924 ACCATCAGCC
* * * *
2427934 AATCTCTTACCCCGAGCCTGAGGTAGATTGCAGTCATCCGATTTTTTACCTCGCGCTTCGGGCAG
1 AATCTCTTACCCCGAGCCTGAGGTACATTGCAGCCATCCGATCTTTTACCTCGAGCTTCGGGCAG
* * * * *
2427999 ATCAACATCAGCCAATCTCTTGCCTCGAGCTTGGGGCAGATTACAGCCATCCGATCTTTTACCCC
66 ATCAACATCAACCAATCTCTTACCCCGAGCCTGGGACAGATTACAGCCATCCGA-----TACCCC
** *
2428064 GAGCTTGGGACATATCACTATCGGCCAATCTCTTACCTCGAGCCTGAGGTAAGTCACTATCGACT
126 GAGCTTGGGACATATCACTATCAACCAATCTCTTACCCCGAGCCTGAGGTAAGTCACTATCGACT
*
2428129 AATCTCTTACCCCGAGCCT-AGGTACATTGTAGCCATCCGATCTTTTACCTCGAGCTT-GAGGCA
1 AATCTCTTACCCCGAGCCTGAGGTACATTGCAGCCATCCGATCTTTTACCTCGAGCTTCG-GGCA
* * * * *
2428192 GATCACCATCAACCAATCTCTTACCCCGAGCCTGGGATAGATTGCAGTCATTCGATACCCCGAGC
65 GATCAACATCAACCAATCTCTTACCCCGAGCCTGGGACAGATTACAGCCATCCGATACCCCGAGC
*
2428257 TTGGGGCATATCACTATCAACCAATCTCTTACCCCGAGC
130 TTGGGACATATCACTATCAACCAATCTCTTACCCCGAGC
2428296 TTGGGGCAGA
Statistics
Matches: 147, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
189 45 0.31
193 1 0.01
194 82 0.56
195 19 0.13
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (190 bp):
AATCTCTTACCCCGAGCCTGAGGTACATTGCAGCCATCCGATCTTTTACCTCGAGCTTCGGGCAG
ATCAACATCAACCAATCTCTTACCCCGAGCCTGGGACAGATTACAGCCATCCGATACCCCGAGCT
TGGGACATATCACTATCAACCAATCTCTTACCCCGAGCCTGAGGTAAGTCACTATCGACT
Found at i:2428277 original size:73 final size:73
Alignment explanation
Indices: 2428129--2428373 Score: 217
Period size: 73 Copynumber: 3.2 Consensus size: 73
2428119 ACTATCGACT
* * *
2428129 AATCTCTTACCCCGAGCCTAGGTAC--ATTGTAGCCATCCGATCTTTTACCTCGAGCTTGAGGCA
1 AATCTCTTACCCCGAGCCT-GGGACAGATTGCAGCCATCCGA-----TACCCCGAGCTTGAGGCA
2428192 GATCACCATCAACC
60 GATCACCATCAACC
* * * * *
2428206 AATCTCTTACCCCGAGCCTGGGATAGATTGCAGTCATTCGATACCCCGAGCTTGGGGCATATCAC
1 AATCTCTTACCCCGAGCCTGGGACAGATTGCAGCCATCCGATACCCCGAGCTTGAGGCAGATCAC
*
2428271 TATCAACC
66 CATCAACC
* * * *
2428279 AATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCT-AGGGTA
1 AATCTCTTACCCCGAGCCTGGGACAGATTGCAGCCATCCGA-----TACCCCGAGCTTGA-GGCA
*
2428343 GATCACCATCAGCC
60 GATCACCATCAACC
* *
2428357 AATTTTTTACCCCGAGC
1 AATCTCTTACCCCGAGC
2428374 TTAGGGTAAA
Statistics
Matches: 138, Mismatches: 22, Indels: 15
0.79 0.13 0.09
Matches are distributed among these distances:
73 64 0.46
76 3 0.02
77 19 0.14
78 52 0.38
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (73 bp):
AATCTCTTACCCCGAGCCTGGGACAGATTGCAGCCATCCGATACCCCGAGCTTGAGGCAGATCAC
CATCAACC
Found at i:2428395 original size:151 final size:150
Alignment explanation
Indices: 2428117--2428398 Score: 361
Period size: 151 Copynumber: 1.9 Consensus size: 150
2428107 CTGAGGTAAG
* * * * *
2428117 TCACTATCGACTAATCTCTTACCCCGAGCCTAGGTACATTGTAGCCATCCGATCTTTTACCTCGA
1 TCACTATCAACCAATCTCTTACCCCGAGCCTAGGCACATTGCAGCCATCCGATCTTTTACCCCGA
* * * **
2428182 GCTTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTGGGATAGATTGCAGTCATTCGA
66 GCTAGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTGGGATAAATTACAACCATTCGA
2428247 TACCCCGAGCTTGGGGCATA
131 TACCCCGAGCTTGGGGCATA
* * *
2428267 TCACTATCAACCAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCG
1 TCACTATCAACCAATCTCTTACCCCGAGCCT-AGGCACATTGCAGCCATCCGATCTTTTACCCCG
* * * * *
2428332 AGCCTAG-GGTAGATCACCATCAGCCAATTTTTTACCCCGAGCTTAGGG-TAAATTACAACCATT
65 AG-CTAGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCT-GGGATAAATTACAACCATT
2428395 CGAT
128 CGAT
2428399 CTTTTACCCC
Statistics
Matches: 111, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
150 28 0.25
151 77 0.69
152 6 0.05
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (150 bp):
TCACTATCAACCAATCTCTTACCCCGAGCCTAGGCACATTGCAGCCATCCGATCTTTTACCCCGA
GCTAGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTGGGATAAATTACAACCATTCGA
TACCCCGAGCTTGGGGCATA
Found at i:2428660 original size:48 final size:48
Alignment explanation
Indices: 2428571--2428692 Score: 163
Period size: 48 Copynumber: 2.5 Consensus size: 48
2428561 CAAACCCCAC
* * *
2428571 CTTCCTGATGAGATACAGAGAAATGAGTCAAAGCAATAAAGAGGTCGT
1 CTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAAGAAAGAGGTCGT
* * * *
2428619 CTTCCTGATGAGATACAAAGAAGTGGGTCACAGTAAGAAAGAGGTTGT
1 CTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAAGAAAGAGGTCGT
**
2428667 CTTCCTGATTTGATACAGAGAAGTGG
1 CTTCCTGATGAGATACAGAGAAGTGG
2428693 ACCAAATTCG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 64 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (48 bp):
CTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAAGAAAGAGGTCGT
Found at i:2430425 original size:30 final size:30
Alignment explanation
Indices: 2430391--2430669 Score: 207
Period size: 30 Copynumber: 9.3 Consensus size: 30
2430381 CTATAATCAT
*
2430391 ATTTTGACTCTTAAACTTCTCCAAAATTAC
1 ATTTTGACCCTTAAACTTCTCCAAAATTAC
** * *
2430421 ATTTTGACCCCCAAACTTTTCCAAAATTTC
1 ATTTTGACCCTTAAACTTCTCCAAAATTAC
* * *
2430451 ATTTTGA-CCTCACAACTTTTTCTAAAATTAC
1 ATTTTGACCCTTA-AAC-TTCTCCAAAATTAC
*
2430482 ATTTTGACCCTTAAACTTTTCCAAAATTAC
1 ATTTTGACCCTTAAACTTCTCCAAAATTAC
* * * *
2430512 A-TTTAACCCCTAAACTTCTCCAAAATCAT
1 ATTTTGACCCTTAAACTTCTCCAAAATTAC
* *
2430541 ATTTTAATCCC-TAAACCTT-TCTAAAATTAC
1 ATTTTGA-CCCTTAAA-CTTCTCCAAAATTAC
* * *
2430571 A-TTTCACCCCTTAAACTTCTCTAAAATCAC
1 ATTTTGA-CCCTTAAACTTCTCCAAAATTAC
* * **
2430601 ATTTTAACCCTCAAACCTTC-CCAAAAACAC
1 ATTTTGACCCTTAAA-CTTCTCCAAAATTAC
* *
2430631 ATTTTGA-CCTTATA-TTCTTCGAAAATT-C
1 ATTTTGACCCTTAAACTTC-TCCAAAATTAC
2430659 ATTTTCGACCC
1 ATTTT-GACCC
2430670 CGTTTTTTCC
Statistics
Matches: 204, Mismatches: 31, Indels: 28
0.78 0.12 0.11
Matches are distributed among these distances:
27 3 0.01
28 6 0.03
29 50 0.25
30 105 0.51
31 36 0.18
32 4 0.02
ACGTcount: A:0.33, C:0.27, G:0.03, T:0.37
Consensus pattern (30 bp):
ATTTTGACCCTTAAACTTCTCCAAAATTAC
Found at i:2430656 original size:89 final size:86
Alignment explanation
Indices: 2430400--2430662 Score: 235
Period size: 89 Copynumber: 3.0 Consensus size: 86
2430390 TATTTTGACT
* * * ** *
2430400 CTTAAACTTCTCCAAAATTACATTTTGACCCCCAAACTTTTCCAAAATTTCATTTTGACCTCACA
1 CTTAAACTTCTCCAAAATTACATTTT-AACCCCAAACCTTCCCAAAATCACATTTTGACCT--TA
* *
2430465 ACTTTTTCTAAAATTACATTTTGACC
63 A-TTCTTCTAAAATTACA-TTTCACC
* * * *
2430491 CTTAAACTTTTCCAAAATTACA-TTTAACCCCTAAA-CTTCTCCAAAATCATATTTTAATCCCTA
1 CTTAAACTTCTCCAAAATTACATTTTAACCCC-AAACCTTC-CCAAAATCACATTTTGA-CCTTA
**
2430554 AACCTTTCTAAAATTACATTTCACCC
63 ATTC-TTCTAAAATTACATTTCA-CC
* * *
2430580 CTTAAACTTCTCTAAAATCACATTTTAACCCTCAAACCTTCCCAAAAACACATTTTGACCTTATA
1 CTTAAACTTCTCCAAAATTACATTTTAACCC-CAAACCTTCCCAAAATCACATTTTGACCTTA-A
*
2430645 TTCTTCGAAAATT-CATTT
64 TTCTTCTAAAATTACATTT
2430663 TCGACCCCGT
Statistics
Matches: 139, Mismatches: 24, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
88 9 0.06
89 56 0.40
90 46 0.33
91 28 0.20
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.37
Consensus pattern (86 bp):
CTTAAACTTCTCCAAAATTACATTTTAACCCCAAACCTTCCCAAAATCACATTTTGACCTTAATT
CTTCTAAAATTACATTTCACC
Found at i:2432002 original size:12 final size:12
Alignment explanation
Indices: 2431985--2432014 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
2431975 TTAAGTTATA
*
2431985 TATAATGTTGAT
1 TATAATATTGAT
2431997 TATAATATTGAT
1 TATAATATTGAT
2432009 TATAAT
1 TATAAT
2432015 TAAAGATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (12 bp):
TATAATATTGAT
Found at i:2432349 original size:78 final size:76
Alignment explanation
Indices: 2432198--2432431 Score: 344
Period size: 77 Copynumber: 3.0 Consensus size: 76
2432188 TAAAAACTAA
* * *
2432198 ATCATGAATTTTAGATACAGTATAAGGGCTAAAATATAATTTAAACC-GTTGTAAACTAAAGATA
1 ATCATGAATTTTAGATA-AGTATAAGGACCAAAATATAATTT-AACCTATTGTAAACTAAAGATA
2432262 GAAAATACAAGTT
64 GAAAATACAAGTT
*
2432275 ATCATGAATTTTAGATATAATATAAGGACCAAAATATAAATTTAACCTATTGTAAACTAAAGATA
1 ATCATGAATTTTAGATA-AGTATAAGGACCAAAATAT-AATTTAACCTATTGTAAACTAAAGATA
2432340 GAAAATACAAGTT
64 GAAAATACAAGTT
* * *
2432353 ATCATGAATTTTAGATGAAGTATAAGGACGAAAAAATAATTTGACCTATTGTAAACTAAAGATAG
1 ATCATGAATTTTAGAT-AAGTATAAGGACCAAAATATAATTTAACCTATTGTAAACTAAAGATAG
*
2432418 AAAACACAAGTT
65 AAAATACAAGTT
2432430 AT
1 AT
2432432 ATTTGATAAA
Statistics
Matches: 144, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
77 77 0.53
78 66 0.46
79 1 0.01
ACGTcount: A:0.48, C:0.09, G:0.13, T:0.29
Consensus pattern (76 bp):
ATCATGAATTTTAGATAAGTATAAGGACCAAAATATAATTTAACCTATTGTAAACTAAAGATAGA
AAATACAAGTT
Found at i:2434109 original size:39 final size:39
Alignment explanation
Indices: 2434055--2434137 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
2434045 ATTCACCACC
* *
2434055 ACCACTTGTCCACTCCGTACCCCCACTAGTACACTCACA
1 ACCACTCGTCCACTCCGCACCCCCACTAGTACACTCACA
** *
2434094 ACCACTCGTCCACTCCGCACCCTTACTAGTACACTCACC
1 ACCACTCGTCCACTCCGCACCCCCACTAGTACACTCACA
2434133 ACCAC
1 ACCAC
2434138 CAACATCACC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.25, C:0.48, G:0.07, T:0.19
Consensus pattern (39 bp):
ACCACTCGTCCACTCCGCACCCCCACTAGTACACTCACA
Found at i:2434135 original size:21 final size:19
Alignment explanation
Indices: 2434076--2434135 Score: 52
Period size: 21 Copynumber: 3.1 Consensus size: 19
2434066 ACTCCGTACC
2434076 CCCACTAGTACACTCA-CA
1 CCCACTAGTACACTCACCA
* * *
2434094 ACCACTCGTCCACTC-CGCA
1 CCCACTAGTACACTCAC-CA
2434113 CCCTTACTAGTACACTCACCA
1 CCC--ACTAGTACACTCACCA
2434134 CC
1 CC
2434136 ACCAACATCA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
18 12 0.39
19 4 0.13
21 14 0.45
22 1 0.03
ACGTcount: A:0.27, C:0.48, G:0.07, T:0.18
Consensus pattern (19 bp):
CCCACTAGTACACTCACCA
Found at i:2434262 original size:42 final size:42
Alignment explanation
Indices: 2434139--2434289 Score: 135
Period size: 42 Copynumber: 3.6 Consensus size: 42
2434129 CACCACCACC
* * *
2434139 AACATCACCCG-CACACTCCTCACCCCCAACAGTGTACTCA-T
1 AACACCACCCGTC-CACTCCTCACCCCCATCAGTGGACTCACT
** * * **
2434180 CAACACCATACGGCCACTCTTCACCCCCATCAGTACACTCACT
1 -AACACCACCCGTCCACTCCTCACCCCCATCAGTGGACTCACT
* * *
2434223 ATCACCACCCGTCCACTCCTCACCCTCATCAGTGGACTCACC
1 AACACCACCCGTCCACTCCTCACCCCCATCAGTGGACTCACT
* * *
2434265 ACCACCACCCGTCCACACTTCACCC
1 AACACCACCCGTCCACTCCTCACCC
2434290 TCAATAGTGG
Statistics
Matches: 88, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
42 86 0.98
43 2 0.02
ACGTcount: A:0.26, C:0.50, G:0.07, T:0.17
Consensus pattern (42 bp):
AACACCACCCGTCCACTCCTCACCCCCATCAGTGGACTCACT
Done.