Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 81 of 143
Found at i:25811624 original size:184 final size:184
Alignment explanation
Indices: 25811308--25811645 Score: 516
Period size: 184 Copynumber: 1.8 Consensus size: 184
25811298 CGGGGTACAT
* * * *
25811308 AGGTTATATGAGTGCTGGTCTTAGATGTCTTACCGATGGCTAAGATCCGGCATTTATTGTGGATT
1 AGGTTATATGAGTGCTGGTCTTAGATGTCCTACCGATGACTAAGATCCGGCATTGATTGCGGATT
* **
25811373 CTTCACAGCTTGTGTGAGCAGCATTGTGTAGCTTAACATCTCGACCCATAACTCGTGTGACCAGG
66 CTTCACAGCTCGTGTGAGCAGCATCATGTAGCTTAACATCTCGACCCATAACTCGTGTGACCAGG
*
25811438 CCCACATCACAGCTCATGTGAGCAGACCCACATCACAGCTCATGTGAGCATTAC
131 CCCACATCACAACTCATGTGAGCAGACCCACATCACAGCTCATGTGAGCATTAC
* *
25811492 AGGTTATAT-AGGTGCTGGTCTTAGATGTCCTACCGATGACTGAGATCCGGTATTGATTGCGGAT
1 AGGTTATATGA-GTGCTGGTCTTAGATGTCCTACCGATGACTAAGATCCGGCATTGATTGCGGAT
* * * *
25811556 TCTTTATAGCTCGTGTGAGCAGCATCATGTAGCTTTACATCTCGACCCATAACTCGTGTGAGCAG
65 TCTTCACAGCTCGTGTGAGCAGCATCATGTAGCTTAACATCTCGACCCATAACTCGTGTGACCAG
* *
25811621 GCCCACTTCACAACTCGTGTGAGCA
130 GCCCACATCACAACTCATGTGAGCA
25811646 TTGCATGCAT
Statistics
Matches: 137, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
183 1 0.01
184 136 0.99
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (184 bp):
AGGTTATATGAGTGCTGGTCTTAGATGTCCTACCGATGACTAAGATCCGGCATTGATTGCGGATT
CTTCACAGCTCGTGTGAGCAGCATCATGTAGCTTAACATCTCGACCCATAACTCGTGTGACCAGG
CCCACATCACAACTCATGTGAGCAGACCCACATCACAGCTCATGTGAGCATTAC
Found at i:25818578 original size:309 final size:309
Alignment explanation
Indices: 25818207--25818831 Score: 1205
Period size: 309 Copynumber: 2.0 Consensus size: 309
25818197 TACAATAAAG
25818207 TACTTTTTGTTCCATATATCATAATATTAATGAATTTGAATTTCATTTAAATGCATATTTATTTT
1 TACTTTTTGTTCCATATATCATAATATTAATGAATTTGAATTTCATTTAAATGCATATTTATTTT
* *
25818272 ATTTACAATATCATATCTAAAATGGATATTGTATCTTCTCAATAGCATTTTTTTTATGGCAATGC
66 ATTTACAATATCATATCTAAAATGGATATTGTATCTTCTCAATAGCATTTTTTTGACGGCAATGC
25818337 TGCACTTAATTCTTAAACCAAACTTCTCAAAAGCATTTTTTCACAGCCTTTTTCAAAGGCAATGC
131 TGCACTTAATTCTTAAACCAAACTTCTCAAAAGCATTTTTTCACAGCCTTTTTCAAAGGCAATGC
25818402 TAAACTAGCATTAAGTAGTGCTACAAAGGCTATGTTCAAGAGGCATATCAGCATTTTGTGCCTTT
196 TAAACTAGCATTAAGTAGTGCTACAAAGGCTATGTTCAAGAGGCATATCAGCATTTTGTGCCTTT
25818467 AAGAGACTAAATGGATGAGTGACAAAGCTAAAGTGAAATAGAGCAAGTA
261 AAGAGACTAAATGGATGAGTGACAAAGCTAAAGTGAAATAGAGCAAGTA
25818516 TACTTTTTGTTCCATATATCATAATATTAATGAATTTGAATTTCATTTAAATGCATATTTATTTT
1 TACTTTTTGTTCCATATATCATAATATTAATGAATTTGAATTTCATTTAAATGCATATTTATTTT
25818581 ATTTACAATATCATATCTAAAATGGATATTGTATCTTCTCAATAGCATTTTTTTGACGGCAATGC
66 ATTTACAATATCATATCTAAAATGGATATTGTATCTTCTCAATAGCATTTTTTTGACGGCAATGC
*
25818646 TGCACTTAATTCTTAAACCAAACTTTTCAAAAGCATTTTTTCACAGCCTTTTTCAAAGGCAATGC
131 TGCACTTAATTCTTAAACCAAACTTCTCAAAAGCATTTTTTCACAGCCTTTTTCAAAGGCAATGC
*
25818711 TAAACTAGCCTTAAGTAGTGCTACAAAGGCTATGTTCAAGAGGCATATCAGCATTTTGTGCCTTT
196 TAAACTAGCATTAAGTAGTGCTACAAAGGCTATGTTCAAGAGGCATATCAGCATTTTGTGCCTTT
25818776 AAGAGACTAAATGGATGAGTGACAAAGCTAAAGTGAAATAGAGCAAGTA
261 AAGAGACTAAATGGATGAGTGACAAAGCTAAAGTGAAATAGAGCAAGTA
*
25818825 TAGTTTT
1 TACTTTT
25818832 AGATTGCTAG
Statistics
Matches: 311, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
309 311 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (309 bp):
TACTTTTTGTTCCATATATCATAATATTAATGAATTTGAATTTCATTTAAATGCATATTTATTTT
ATTTACAATATCATATCTAAAATGGATATTGTATCTTCTCAATAGCATTTTTTTGACGGCAATGC
TGCACTTAATTCTTAAACCAAACTTCTCAAAAGCATTTTTTCACAGCCTTTTTCAAAGGCAATGC
TAAACTAGCATTAAGTAGTGCTACAAAGGCTATGTTCAAGAGGCATATCAGCATTTTGTGCCTTT
AAGAGACTAAATGGATGAGTGACAAAGCTAAAGTGAAATAGAGCAAGTA
Found at i:25824576 original size:12 final size:13
Alignment explanation
Indices: 25824554--25824580 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
25824544 TGGCCCATTT
25824554 AAAACCAAAAAAA
1 AAAACCAAAAAAA
25824567 AAAACCAAAAAAA
1 AAAACCAAAAAAA
25824580 A
1 A
25824581 TAAATTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAACCAAAAAAA
Found at i:25830098 original size:15 final size:15
Alignment explanation
Indices: 25830078--25830110 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
25830068 CTTGAAACTT
*
25830078 AAAGAAAGAAAAGAA
1 AAAGAAAAAAAAGAA
25830093 AAAGAAAAAAAAGAA
1 AAAGAAAAAAAAGAA
25830108 AAA
1 AAA
25830111 AATCAAGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAAGAA
Found at i:25830988 original size:8 final size:8
Alignment explanation
Indices: 25830960--25831035 Score: 82
Period size: 8 Copynumber: 9.1 Consensus size: 8
25830950 TTTCACCCAT
25830960 AAAAAAAG
1 AAAAAAAG
**
25830968 AAAATGAG
1 AAAAAAAG
25830976 AAAAATAAG
1 AAAAA-AAG
25830985 AAAAAAAAG
1 -AAAAAAAG
25830994 AAAAAAAG
1 AAAAAAAG
25831002 -AAAAAAG
1 AAAAAAAG
25831009 AAAATAGAAG
1 AAAA-A-AAG
*
25831019 GAAAAAAG
1 AAAAAAAG
25831027 AAAAAAAG
1 AAAAAAAG
25831035 A
1 A
25831036 GAGGTCGAGG
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
7 7 0.12
8 32 0.56
9 7 0.12
10 11 0.19
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (8 bp):
AAAAAAAG
Found at i:25830998 original size:33 final size:32
Alignment explanation
Indices: 25830960--25831035 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 32
25830950 TTTCACCCAT
*
25830960 AAAAAAAGAAAATGAGAAAAATAAGAA-AAAAAAG
1 AAAAAAAGAAAA-AAG-AAAAT-AGAAGAAAAAAG
25830994 AAAAAAAGAAAAAAGAAAATAGAAGGAAAAAAG
1 AAAAAAAGAAAAAAGAAAATAGAA-GAAAAAAG
25831027 AAAAAAAGA
1 AAAAAAAGA
25831036 GAGGTCGAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
31 4 0.10
32 5 0.13
33 18 0.46
34 12 0.31
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (32 bp):
AAAAAAAGAAAAAAGAAAATAGAAGAAAAAAG
Found at i:25831033 original size:26 final size:25
Alignment explanation
Indices: 25830960--25831035 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 25
25830950 TTTCACCCAT
**
25830960 AAAAAAAGAAAATGAGAAAAATAAGA
1 AAAAAAAGAAAAAAAGAAAAA-AAGA
25830986 AAAAAAAGAAAAAAAG-AAAAAAGA
1 AAAAAAAGAAAAAAAGAAAAAAAGA
* *
25831010 AAATAGAAGGAAAAAAGAAAAAAAGA
1 AAA-AAAAGAAAAAAAGAAAAAAAGA
25831036 GAGGTCGAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.16
25 15 0.34
26 22 0.50
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (25 bp):
AAAAAAAGAAAAAAAGAAAAAAAGA
Found at i:25832639 original size:189 final size:188
Alignment explanation
Indices: 25831983--25834978 Score: 2603
Period size: 187 Copynumber: 16.0 Consensus size: 188
25831973 AATGGACAAA
* * * * * *
25831983 GAGACTTCAAATCCTATCTT-CTGGTGAGGTACTGAGAAGTGGGTTAAAATAGGTAGCAGATTTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACA-GAAGCAGATCTC
* * * * * **
25832047 AACATCCTTGAGGTTACAATGGAATGAAGTGAAGCACCAGAATATTATACCTCTGAGTTGCAGTG
65 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTCTGAGTTGCAGTG
* *
25832112 GGTC-AGATGAAAATAATGAAGTAGAGTTCAACGTCTTTAAGGTTACAGTGGAGTGGAGT
130 GGTCGA-ATGAAAATAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
* * * * *
25832171 GAGACTTCAAATCCCATCTTCCTGGGGAGGTATAGAGAAGTGGGTCAAAACA-AAGCAAATCTCA
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACAGAAGCAGATCTCA
* * * * * *
25832235 ACGTCCTTGCGGTTACAGTGGAGTGGAGTGGAGTGAAGCACAAAAATCCTATACCCCTGAGTTCC
66 ACGTCCCTGAGGTTAC-----AGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTCTGAGTTGC
* * * * * *
25832300 AGTAGGTC-AGATGAAAATAATGAGGCAGCA-CTCAACTTC-CTAAGGTTACACTGAAGTGGAGT
126 AGTGGGTCGA-ATGAAAATAATGAAGTAG-AGCTCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
* * * * * *
25832362 GAAACTTCGAATCTCATCTTCCTAGG-GAGGTAAAAAGAAGT-AGGTTAAAACAGGTAGCAGATC
1 GAGACTTCAAATCCCATCTTCCT-GGTGAGGTACAGAGAAGTGA-GTTAAAACA-GAAGCAGATC
** ** * * * *
25832425 TCAATATCCCTGATATTACAGTGGAGTTGAGTGAAGCTCTAGAATCCTATACCTCTGAGTTGTAG
63 TCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTCTGAGTTGCAG
* * * * * * *
25832490 TTGATCGAATGAAAATAATGAAGTAAATCTCAATGTCTCTAAGGTTACAATAGAGTGGAGT
128 TGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
* * * * * * *
25832551 GAGACTTCAAATCCTATCTTACTGCTGAAGTACAGAGAAGTGAGATAAAACATGTAGTAGATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACA-GAAGCAGATCTC
* * * * *
25832616 AACATCCATGAGGTTACAGTGGAGTAGAGTGAAGCACCAGAATCCTATACCACTGAGTTACAGTG
65 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTCTGAGTTGCAGTG
* * * *
25832681 GGTC-AGATGAAAATAATGAAGTAAAGATCAACGTCTCTGAGGTTATAGTGGAGTGGAGT
130 GGTCGA-ATGAAAATAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
* ** * * *
25832740 GAGACTTCAAATCCCATATTCAAGGTGAGGTACAGAGAAGTGGGTCAAAACA-AAGCGGATCTCA
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACAGAAGCAGATCTCA
* * * * * *
25832804 ACGTCCCTAAGGTTAAAGTAGAGTGGAGTGAAGCACTAGAATCTTATACC-CTTTAGTTGCAGTG
66 ACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTC-TGAGTTGCAGTG
* * * * * *
25832868 GGTCGGATGGAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGAGGAGT
130 GGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
** * * * * *
25832927 GAGACTTCAAATCCCATCTTCCTAATGAGGTACAAATAAGT-AGGTT-AAACAGGTAGCAAATAT
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGA-GTTAAAACA-GAAGCAGATCT
* ** * * * * *
25832990 CAATGTCATTGAGGATACAGTGGAGTGGAGTAAAGCACCAGAATCCTACACC-CTTGAGTTACAA
64 CAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTC-TGAGTTGCAG
* * * ** *
25833054 TGGGTCGAATGAAATTAATGAAGTAGAGCTTAACGTC-CTTGAGGTTGTAATGGAGTGGAGT
128 TGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTC-TAAGGTTACAGTGGAGTGGAGT
* * *
25833115 AAGACTTCAAATCCCATCTTACTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGCAA-CAGATCT
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACA-G-AAGCAGATCT
* * * * * ** *
25833179 CAACGTTCCTAAGGTTATAGTGGAGTGAAGTGAAGCATCAGAATCCTATACAACTGAGTTACAGT
64 CAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTCTGAGTTGCAGT
* * * * *
25833244 GGGTTGGATGAAAATAATGAAGCAGAGCTTAACATCTCTAAGGTTACAGTGGAGTGGAGT
129 GGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
* * * * * * *
25833304 TAGACTTCAAATCTCATCTTTCGGGTGAGGTGCAGAGAAGTTG-GTTTAAACA-AAGCGGATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAG-TGAGTTAAAACAGAAGCAGATCTC
* * * * * *
25833367 AACGTCCCTGAGGTTACAGCGGAGTGGAATGAAGTACTAGAATCTTATA-CTCCTGAGTTGTAGT
65 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCT-CTGAGTTGCAGT
* * * * * * *
25833431 GGGTCGGATGAAAATAATGTAGCT-GAGCTCAACCTCTCTAAGGTTACAATAGAATGAAGT
129 GGGTCGAATGAAAATAATGAAG-TAGAGCTCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
* * ** * *
25833491 GAGATTTCAAATCCCATGTTCCTAATAAGGTACAGAGAAGTGAGTTAAAACAGGTAGCAGATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACA-GAAGCAGATCTC
* * *
25833556 AACGTCCCTGAGGTTACAGTGGAGTGGGGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTG
65 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTCTGAGTTGCAGTG
* * * * * *
25833621 GGTTGAATGAAAATAAAGAAGTTGAGCTCAACGTC-CTTGAGGTTATAGTAGAGTGGAGT
130 GGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTC-TAAGGTTACAGTGGAGTGGAGT
* * * * * *
25833680 GAGACTTCAAATCCCATATTCCTAGTGAGGTGCAAAAAAGTGAGTCAAAACA-AAGCAGATCTCA
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACAGAAGCAGATCTCA
* * * * * * * *
25833744 ACGTCACTAAGGTTACAATAGATTGGAGTGAAGAACCAAAATCCTATACCGT-TGAGTTGTAGTG
66 ACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACC-TCTGAGTTGCAGTG
* * * * * * * * ** *
25833808 GGTTGGATAAAAATATTAAAGTAGAGCTGAAAGTCCCTAACATT--A-T--AATGGAGT
130 GGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
* * * *
25833862 G-GA-TTGAAAGTCCCTATCTTCTTGGTGAGATACAGAGAAGTGGGTTAAAACAGGAAGCAGATC
1 GAGACTTCAAA-TCCC-ATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACA-GAAGCAGATC
* * * * * * ** *
25833925 TTAACGTCCCTAAGGTTATAGTGGAGTAGAGTGAAGCACTAGATTTTTATACCTCTAAGTTGCAG
63 TCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTCTGAGTTGCAG
* * * * *
25833990 TGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTC-CCAGAGATTACAGAGGAGTGGAGT
128 TGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTCTA-AGGTTACAGTGGAGTGGAGT
* * * * * *
25834051 GAGACTTCAAATCCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTCAAAATA-AAGCGGATTTCA
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACAGAAGCAGATCTCA
** * * * * * *
25834115 ACGTCTTTGAGGTTACAATAGAGTGGAGTGAAGCACTAGAATTCTATACCCCTGAGTTACAGTGG
66 ACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTCTGAGTTGCAGTGG
** * * * **
25834180 GTTAAATGAAAATAATGAAGTAGTGCTCAACGTCTCTGAGGTTAGAGTAAAGTGGAGT
131 GTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
* * * * * * * * *
25834238 GAGACTTCACATCCTATCCTCCTAGTCAGGT----A-TAGTGGGTCAAAACA-AAGCGGATCTCA
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACAGAAGCAGATCTCA
** * * **
25834297 ACGTCCCAAAGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTGTACC-CTTGAGGTT-TTGT
66 ACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTC-TGA-GTTGCAGT
* * * * *
25834360 AGGTCGGATGAAAATAATGAAGCAGAGCAT-AACGTCCCTGAGGTTACAGTGGAGTGGAGT
129 GGGTCGAATGAAAATAATGAAGTAGAGC-TCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
** * * * *
25834420 GAGACTTCAAATCGAATCTTTCTGGTGAGGTACAGAGGAGTG-GATTAAAACAGGTAGCAAATCT
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAG-TTAAAACA-GAAGCAGATCT
* * * * * * *
25834484 TAGA-GTCCTTGAGGTTACTGTAGAGTGCAGTGAAGCATCAGAATCCTATACGC-CTGAGTTGTA
64 CA-ACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATAC-CTCTGAGTTGCA
* * * * *
25834547 GTGGGTCGGATGAAAATAATAAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGAAGT
127 GTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
* * *
25834609 GAGACTTTAAATCCCATCTTTCTGGTGAGATACAGAGAAGTGAGTTAAAACA-AAGCAGATCTCA
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACAGAAGCAGATCTCA
* * * * * * * *
25834673 ACGTCCCTGAGGTTATAGTAGAGTGGAGTGAAGCGCTAGAATCTTATACCCCTAAGTTACAGTGG
66 ACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTCTGAGTTGCAGTGG
* * * *
25834738 GTCGAATGAAAATAAAGAAGTAGAGCTCAATGTC-CTTCAGGTTACAATGGAGTGGAGT
131 GTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTC-TAAGGTTACAGTGGAGTGGAGT
** * * *
25834796 GAGACTTCAAATCCCAAATTCCTAGTGAGATGCAGAGAAGTGAGTTAAAACA-AAGCAGATCTCA
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACAGAAGCAGATCTCA
* * * * * * ** * * * * *
25834860 ACATCACTAAGGTTACAATGGATTGCAAAGAAGAACCAAAATCTTATACCGCTGAGTTGTAGTGG
66 ACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTCTGAGTTGCAGTGG
* * * ** * *
25834925 GTCGGATGAAAATAATGAAGCAGAGCTTAATATCCCTATGGTTACAGTGGAGTG
131 GTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGGAGTG
25834979 AAGCATCAGA
Statistics
Matches: 2271, Mismatches: 463, Indels: 149
0.79 0.16 0.05
Matches are distributed among these distances:
180 5 0.00
181 7 0.00
182 177 0.08
183 8 0.00
184 92 0.04
185 1 0.00
186 16 0.01
187 811 0.36
188 239 0.11
189 742 0.33
190 17 0.01
191 66 0.03
192 69 0.03
193 21 0.01
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (188 bp):
GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTTAAAACAGAAGCAGATCTCA
ACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCTCTGAGTTGCAGTGG
GTCGAATGAAAATAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGGAGTGGAGT
Found at i:25832933 original size:376 final size:373
Alignment explanation
Indices: 25831983--25834978 Score: 2653
Period size: 376 Copynumber: 8.0 Consensus size: 373
25831973 AATGGACAAA
* * * * *
25831983 GAGACTTCAAATCCTATCTTC-TGGTGAGGTACTGAGAAGTGGGTTAAAATAGGTAGCAGATTTC
1 GAGACTTCAAATCCCATCTTCATGGTGAGGTACAGAGAAGTGGGTTAAAACA-GAAGCAGATCTC
* * * * * * * **
25832047 AACATCCTTGAGGTTACAATGGAATGAAGTGAAGCACCAGAATATTATA-CCTCTGAGTTGCAGT
65 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCT-TGAGTTGCAGT
* * * ** *
25832111 GGGTCAGATGAAAATAATGAAGTAGAGTTCAACGTCTTTAAGGTTACAGTGGAGTGGAGTGAGAC
129 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGAC
* * *
25832176 TTCAAATCCCATCTTCCTGGGGAGGTATAGAGAAGTGGGTCAAAACAAAGCAAATCTCAACGTCC
194 TTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGT-AAAACAAAGCAGATCTCAACGTCC
* * * * * *
25832241 TTGCGGTTACAGTGGAGTGGAGTGGAGTGAAGCACAAAAATCCTATACCCCTGAGTTCCAGTAGG
258 ATGAGGTTAC-----AGTGGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTGAGTTGCAGTGGG
* * * * * * *
25832306 TCAGATGAAAATAATGAGGCAGCA-CTCAACTTC-CTAAGGTTACACTGAAGTGGAGT
317 TCGGATGAAAATAATGAAGTAG-AGCTCAACGTCTCTGAGGTTACAGTGGAGTGGAGT
* * * * * * * *
25832362 GAAACTTCGAATCTCATCTTCCTAGG-GAGGTAAAAAGAAGTAGGTTAAAACAGGTAGCAGATCT
1 GAGACTTCAAATCCCATCTTCAT-GGTGAGGTACAGAGAAGTGGGTTAAAACA-GAAGCAGATCT
** * ** * * *
25832426 CAATATCCCTGATATTACAGTGGAGTTGAGTGAAGCTCTAGAATCCTATA-CCTCTGAGTTGTAG
64 CAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCT-TGAGTTGCAG
* * * * * * * * * * *
25832490 TTGATCGAATGAAAATAATGAAGTAAATCTCAATGTCTCTAAGGTTACAATAGAGTGGAGTGAGA
128 TGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGA
* * * * * * * *
25832555 CTTCAAATCCTATCTTACTGCTGAAGTACAGAGAAGTGAGATAAAACATGTAGTAGATCTCAACA
193 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTG-GGTAAAACA--AAGCAGATCTCAACG
* *
25832620 TCCATGAGGTTACAGTGGAGTAGAGTGAAGCACCAGAATCCTATACCACTGAGTTACAGTGGGTC
255 TCCATGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACC-CTGAGTTGCAGTGGGTC
* * * *
25832685 AGATGAAAATAATGAAGTAAAGATCAACGTCTCTGAGGTTATAGTGGAGTGGAGT
319 GGATGAAAATAATGAAGTAGAGCTCAACGTCTCTGAGGTTACAGTGGAGTGGAGT
* * * *
25832740 GAGACTTCAAATCCCATATTCAAGGTGAGGTACAGAGAAGTGGGTCAAAACA-AAGCGGATCTCA
1 GAGACTTCAAATCCCATCTTCATGGTGAGGTACAGAGAAGTGGGTTAAAACAGAAGCAGATCTCA
* * * *
25832804 ACGTCCCTAAGGTTAAAGTAGAGTGGAGTGAAGCACTAGAATCTTATACCCTTTAGTTGCAGTGG
66 ACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCTTGAGTTGCAGTGG
* *
25832869 GTCGGATGGAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGAGGAGTGAGACTT
131 GTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTT
** * * * * * * * *
25832934 CAAATCCCATCTTCCTAATGAGGTACAAATAAGTAGGTTAAACAGGTAGCAAATATCAATGT-CA
196 CAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTAAAACA--AAGCAGATCTCAACGTCCA
* * * * * *
25832998 TTGAGGATACAGTGGAGTGGAGTAAAGCACCAGAATCCTACACCCTTGAGTTACAATGGGTCGAA
259 -TGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCC-TGAGTTGCAGTGGGTCGGA
* * ** *
25833063 TGAAATTAATGAAGTAGAGCTTAACGTC-CTTGAGGTTGTAATGGAGTGGAGT
322 TGAAAATAATGAAGTAGAGCTCAACGTCTC-TGAGGTTACAGTGGAGTGGAGT
*
25833115 AAGACTTCAAATCCCATCTT-ACTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGCAA-CAGATC
1 GAGACTTCAAATCCCATCTTCA-TGGTGAGGTACAGAGAAGTGGGTTAAAACA-G-AAGCAGATC
* * * * *
25833178 TCAACGTTCCTAAGGTTATAGTGGAGTGAAGTGAAGCA-TCAGAATCCTATACAAC-TGAGTTAC
63 TCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACT-AGAATCCTATAC-CCTTGAGTTGC
* * * * * *
25833241 AGTGGGTTGGATGAAAATAATGAAGCAGAGCTTAACATCTCTAAGGTTACAGTGGAGTGGAGTTA
126 AGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGA
* * * * * * *
25833306 GACTTCAAATCTCATCTTTCGGGTGAGGTGCAGAGAAGTTGGTTTAAACAAAGCGGATCTCAACG
191 GACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAG-TGGGTAAAACAAAGCAGATCTCAACG
* * * * * * *
25833371 TCCCTGAGGTTACAGCGGAGTGGAATGAAGTACTAGAATCTTATACTCCTGAGTTGTAGTGGGTC
255 TCCATGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATAC-CCTGAGTTGCAGTGGGTC
* * * * * * *
25833436 GGATGAAAATAATGTAGCT-GAGCTCAACCTCTCTAAGGTTACAATAGAATGAAGT
319 GGATGAAAATAATGAAG-TAGAGCTCAACGTCTCTGAGGTTACAGTGGAGTGGAGT
* * * ** * * *
25833491 GAGATTTCAAATCCCATGTTCCTAATAAGGTACAGAGAAGTGAGTTAAAACAGGTAGCAGATCTC
1 GAGACTTCAAATCCCATCTTCATGGTGAGGTACAGAGAAGTGGGTTAAAACA-GAAGCAGATCTC
* * * * *
25833556 AACGTCCCTGAGGTTACAGTGGAGTGGGGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTG
65 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCTTGAGTTGCAGTG
* * * ** * * *
25833621 GGTTGAATGAAAATAAAGAAGTTGAGCTCAACGTCCTTGAGGTTATAGTAGAGTGGAGTGAGACT
130 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACT
* * * * * *
25833686 TCAAATCCCATATTCCTAGTGAGGTGCAAAAAAGTGAGTCAAAACAAAGCAGATCTCAACGT-CA
195 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGT-AAAACAAAGCAGATCTCAACGTCCA
* * * * * * * * *
25833750 CTAAGGTTACAATAGATTGGAGTGAAGAACCAAAATCCTATACCGTTGAGTTGTAGTGGGTTGGA
259 -TGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACC-CTGAGTTGCAGTGGGTCGGA
* * * * * * * ** *
25833815 TAAAAATATTAAAGTAGAGCTGAAAGTCCCT-A----ACATTATAATGGAGT
322 TGAAAATAATGAAGTAGAGCTCAACGTCTCTGAGGTTACAGTGGAGTGGAGT
* * *
25833862 G-GA-TTGAAAGTCCCTATCTTCTTGGTGAGATACAGAGAAGTGGGTTAAAACAGGAAGCAGATC
1 GAGACTTCAAA-TCCC-ATCTTCATGGTGAGGTACAGAGAAGTGGGTTAAAACA-GAAGCAGATC
* * * * ** *
25833925 TTAACGTCCCTAAGGTTATAGTGGAGTAGAGTGAAGCACTAGATTTTTATA-CCTCTAAGTTGCA
63 TCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCT-TGAGTTGCA
* * *
25833989 GTGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCAGAGATTACAGAGGAGTGGAGTGAG
127 GTGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAG
* * * *
25834054 ACTTCAAATCCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTCAAAATAAAGCGGATTTCAACGT
192 ACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGT-AAAACAAAGCAGATCTCAACGT
** * * * * * **
25834119 CTTTGAGGTTACAATAGAGTGGAGTGAAGCACTAGAATTCTATACCCCTGAGTTACAGTGGGTTA
256 CCATGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTGAGTTGCAGTGGGTCG
* * * **
25834184 AATGAAAATAATGAAGTAGTGCTCAACGTCTCTGAGGTTAGAGTAAAGTGGAGT
320 GATGAAAATAATGAAGTAGAGCTCAACGTCTCTGAGGTTACAGTGGAGTGGAGT
* * * * * * * * *
25834238 GAGACTTCACATCCTATCCTCCTAGTCAGGT----A-TAGTGGGTCAAAACA-AAGCGGATCTCA
1 GAGACTTCAAATCCCATCTTCATGGTGAGGTACAGAGAAGTGGGTTAAAACAGAAGCAGATCTCA
* * * * ** *
25834297 ACGTCCCAAAGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTGTACCCTTGAGGTT-TTGTA
66 ACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCTTGA-GTTGCAGTG
25834361 GGTCGGATGAAAATAATGAAGCAGAGCAT-AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGAC
130 GGTCGGATGAAAATAATGAAGCAGAGC-TCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGAC
** * * * * * *
25834425 TTCAAATCGAATCTTTCTGGTGAGGTACAGAGGAGTGGATTAAAACAGGTAGCAAATCTTAGA-G
194 TTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGG-GTAAAACA--AAGCAGATCTCA-ACG
* * * * * *
25834489 TCCTTGAGGTTACTGTAGAGTGCAGTGAAGCATCAGAATCCTATACGCCTGAGTTGTAGTGGGTC
255 TCCATGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATAC-CCTGAGTTGCAGTGGGTC
* * *
25834554 GGATGAAAATAATAAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGAAGT
319 GGATGAAAATAATGAAGTAGAGCTCAACGTCTCTGAGGTTACAGTGGAGTGGAGT
* * *
25834609 GAGACTTTAAATCCCATCTTTC-TGGTGAGATACAGAGAAGTGAGTTAAAACA-AAGCAGATCTC
1 GAGACTTCAAATCCCATC-TTCATGGTGAGGTACAGAGAAGTGGGTTAAAACAGAAGCAGATCTC
* * * * * * * *
25834672 AACGTCCCTGAGGTTATAGTAGAGTGGAGTGAAGCGCTAGAATCTTATACCCCTAAGTTACAGTG
65 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCTTGAGTTGCAGTG
* * * * * * *
25834737 GGTCGAATGAAAATAAAGAAGTAGAGCTCAATGTCCTTCAGGTTACAATGGAGTGGAGTGAGACT
130 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACT
** * * * * *
25834802 TCAAATCCCAAATTCCTAGTGAGATGCAGAGAAGTGAGTTAAAACAAAGCAGATCTCAACAT-CA
195 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTG-GGTAAAACAAAGCAGATCTCAACGTCCA
* * * * ** * * * *
25834866 CTAAGGTTACAATGGATTGCAAAGAAGAACCAAAATCTTATACCGCTGAGTTGTAGTGGGTCGGA
259 -TGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACC-CTGAGTTGCAGTGGGTCGGA
* * ** *
25834931 TGAAAATAATGAAGCAGAGCTTAATATCCCT-ATGGTTACAGTGGAGTG
322 TGAAAATAATGAAGTAGAGCTCAACGTCTCTGA-GGTTACAGTGGAGTG
25834979 AAGCATCAGA
Statistics
Matches: 2114, Mismatches: 438, Indels: 135
0.79 0.16 0.05
Matches are distributed among these distances:
369 155 0.07
370 17 0.01
371 426 0.20
372 7 0.00
373 4 0.00
374 107 0.05
375 178 0.08
376 700 0.33
377 227 0.11
378 74 0.04
379 17 0.01
380 176 0.08
381 4 0.00
382 22 0.01
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (373 bp):
GAGACTTCAAATCCCATCTTCATGGTGAGGTACAGAGAAGTGGGTTAAAACAGAAGCAGATCTCA
ACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCTTGAGTTGCAGTGG
GTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTT
CAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTAAAACAAAGCAGATCTCAACGTCCATG
AGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTGAGTTGCAGTGGGTCGGATGAA
AATAATGAAGTAGAGCTCAACGTCTCTGAGGTTACAGTGGAGTGGAGT
Found at i:25834210 original size:558 final size:554
Alignment explanation
Indices: 25832057--25834978 Score: 2527
Period size: 564 Copynumber: 5.2 Consensus size: 554
25832047 AACATCCTTG
* * * * ** * * *
25832057 AGGTTACAATGGAATGAAGTGAAGCACCAGAATATTATACCTCTGAGTTGCAGTGGGTCAGATGA
1 AGGTTACAATGGAGTGGAGTGAAGAACCAAAATCCTATACCGCTGAGTTGTAGTGGGTCGGATGA
* * * ** *
25832122 AAATAATGAAGTAGAGTTCAACGTCTTTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCA
66 AAATAATGAAGCAGAGCT-AAAGTCCCTAAGGTTACAGTGGAGTGGA-T-TGA---CAAATCCCA
* * * * * * **
25832187 TCTTCCTGGGGAGGTATAGAGAAGTGGGTCAAAACAAAGCAAATCTCAACGTCCTTGCGGTTACA
125 TCTTTCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTAAGGTT--A
* * * * * * *
25832252 GTGGAGTGGAGTGGAGTGAAGCACAAAAATCCTATACCCCTGAGTTCCAGTAGGTCAGATGAAAA
188 -T--AGTAGAGTGGAGTGAAGCACTAGAATCTTATA-CCCTGAGTTGCAGTGGGTCGGATGAAAA
* * * ** * * * * *
25832317 TAATGAGGCAGCA-CTCAACTTCCTA-AGGTTACACTGAAGTGGAGTGAAACTTCGAATCTCATC
249 TAATGAAGCAG-AGCTCAACGTCCCAGAGGTTACAGAGGAGTGAAGTGAGACTTCAAATCCCATC
** * * * ** **
25832380 TTCCTAGGGAGGTAAAAAGAAGT-AGGTTAAAACAGGTAGCAGATCTCAATATCCCTGATATTAC
313 TTCCTAATGAGGTACAGAGAAGTGA-GTTAAAACA--AAGCAGATCTCAACGTCCCTGAGGTTAC
* * * * * ** * * *
25832444 AGTGGAGTTGAGTGAAGCTCTAGAATCCTATACCTCTGAGTTGTAGTTGATCGAATGAAAATAAT
375 AGTAGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTACAGTGGGTCGAATGAAAATAAA
* * * * * * * *
25832509 GAAGTAAATCTCAATGT-CTCTAAGGTTACAATAGAGTGGAGTGAGACTTCAAATCCTATCTTAC
440 GAAGTAGAGCTCAACGTCCT-TGAGGTTATAATAGAGTGGAGTGAGACTTCAAATCCCATATTCC
* * * * * * *
25832573 T-GCTGAAGTACAGAGAAGTGAGAT-AAAACATGTAGTAGATCTCAACATC-CATG
504 TAG-TGAGGTGCAGAAAAGTGAG-TCAAAACA--AAGCAGATCTCAACGTCAC-TA
* * * * * ** *
25832626 AGGTTACAGTGGAGTAGAGTGAAGCACCAGAATCCTATACCACTGAGTTACAGTGGGTCAGATGA
1 AGGTTACAATGGAGTGGAGTGAAGAACCAAAATCCTATACCGCTGAGTTGTAGTGGGTCGGATGA
* * * * * * * *
25832691 AAATAATGAAGTAAAGATCAACGTCTCTGAGGTTATAGTGGAGTGGAGTGAGACTTCAAATCCCA
66 AAATAATGAAGCAGAGCT-AAAGTCCCTAAGGTTACAGTGGAGTGGA-T-TGA---CAAATCCCA
* * * * *
25832756 T-ATTCAAGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTCAACGTCCCTAAGGTTAA
125 TCTTTC-TGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTAAGGTTAT
* *
25832820 AGTAGAGTGGAGTGAAGCACTAGAATCTTATACCCTTTAGTTGCAGTGGGTCGGATGGAAATAAT
189 AGTAGAGTGGAGTGAAGCACTAGAATCTTATACCC-TGAGTTGCAGTGGGTCGGATGAAAATAAT
* * * *
25832885 GAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGAGGAGTGAGACTTCAAATCCCATCTTCCT
253 GAAGCAGAGCTCAACGTCCCAGAGGTTACAGAGGAGTGAAGTGAGACTTCAAATCCCATCTTCCT
* * * * * * ** * *
25832950 AATGAGGTACAAATAAGT-AGGTT-AAACAGGTAGCAAATATCAATGTCATTGAGGATACAGTGG
318 AATGAGGTACAGAGAAGTGA-GTTAAAACA--AAGCAGATCTCAACGTCCCTGAGGTTACAGTAG
* * * * * *
25833013 AGTGGAGTAAAGCACCAGAATCCTACACCCTTGAGTTACAATGGGTCGAATGAAATTAATGAAGT
380 AGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTACAGTGGGTCGAATGAAAATAAAGAAGT
* * * * * * *
25833078 AGAGCTTAACGTCCTTGAGGTTGTAATGGAGTGGAGTAAGACTTCAAATCCCATCTTACTGGTGA
445 AGAGCTCAACGTCCTTGAGGTTATAATAGAGTGGAGTGAGACTTCAAATCCCATATTCCTAGTGA
* * * *
25833143 GGTACAGAGAAGTGGGTTAAAACAGGCAA-CAGATCTCAACGTTC-CTA
510 GGTGCAGAAAAGTGAGTCAAAACA---AAGCAGATCTCAACG-TCACTA
* * * * * * ** ** *
25833190 AGGTTATAGTGGAGTGAAGTGAAGCATCAGAATCCTATACAACTGAGTTACAGTGGGTTGGATGA
1 AGGTTACAATGGAGTGGAGTGAAGAACCAAAATCCTATACCGCTGAGTTGTAGTGGGTCGGATGA
* *
25833255 AAATAATGAAGCAGAGCTTAACA-TCTCTAAGGTTACAGTGGAGTGGAGTTAGACTTCAAATCTC
66 AAATAATGAAGCAGAGC-TAA-AGTCCCTAAGGTTACAGTGGAGTGGA-TT-GA---CAAATCCC
* * * * * * *
25833319 ATCTTTCGGGTGAGGTGCAGAGAAGTTGGTTTAAACAAAGCGGATCTCAACGTCCCTGAGGTTAC
124 ATCTTTCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTAAGGTTAT
** * * *
25833384 AGCGGAGTGGAATGAAGTACTAGAATCTTATACTCCTGAGTTGTAGTGGGTCGGATGAAAATAAT
189 AGTAGAGTGGAGTGAAGCACTAGAATCTTATAC-CCTGAGTTGCAGTGGGTCGGATGAAAATAAT
* * * * * * * *
25833449 GTAGCTGAGCTCAACCTCTCTA-AGGTTACA-ATAGAATGAAGTGAGATTTCAAATCCCATGTTC
253 GAAGCAGAGCTCAACGTC-CCAGAGGTTACAGA-GGAGTGAAGTGAGACTTCAAATCCCATCTTC
* * *
25833512 CTAATAAGGTACAGAGAAGTGAGTTAAAACAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGTG
316 CTAATGAGGTACAGAGAAGTGAGTTAAAACA--AAGCAGATCTCAACGTCCCTGAGGTTACAGTA
* ** *
25833577 GAGTGGGGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTTGAATGAAAATAAAGAAG
379 GAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTACAGTGGGTCGAATGAAAATAAAGAAG
* *
25833642 TTGAGCTCAACGTCCTTGAGGTTATAGTAGAGTGGAGTGAGACTTCAAATCCCATATTCCTAGTG
444 TAGAGCTCAACGTCCTTGAGGTTATAATAGAGTGGAGTGAGACTTCAAATCCCATATTCCTAGTG
*
25833707 AGGTGCAAAAAAGTGAGTCAAAACAAAGCAGATCTCAACGTCACTA
509 AGGTGCAGAAAAGTGAGTCAAAACAAAGCAGATCTCAACGTCACTA
* * * * *
25833753 AGGTTACAATAGATTGGAGTGAAGAACCAAAATCCTATACCGTTGAGTTGTAGTGGGTTGGATAA
1 AGGTTACAATGGAGTGGAGTGAAGAACCAAAATCCTATACCGCTGAGTTGTAGTGGGTCGGATGA
* * * ** * * *
25833818 AAATATTAAAGTAGAGCTGAAAGTCCCTAACATTATAATGGAGTGGATTGA-AAGTCCCTATC-T
66 AAATAATGAAGCAGAGCT-AAAGTCCCTAAGGTTACAGTGGAGTGGATTGACAAATCCC-ATCTT
* *
25833881 TCTTGGTGAGATACAGAGAAGTGGGTTAAAACAGGAAGCAGATCTTAACGTCCCTAAGGTTATAG
129 TC-TGGTGAGGTACAGAGAAGTGGGTTAAAACA--AAGCAGATCTCAACGTCCCTAAGGTTATAG
* * * * *
25833946 TGGAGTAGAGTGAAGCACTAGATTTTTATACCTCTAAGTTGCAGTGGGTCGGATGAAAATAATGA
191 TAGAGTGGAGTGAAGCACTAGAATCTTATACC-CTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * * **
25834011 AGCAGAGCTCAACGTCCCAGAGATTACAGAGGAGTGGAGTGAGACTTCAAATCCCATCTTCTTGG
255 AGCAGAGCTCAACGTCCCAGAGGTTACAGAGGAGTGAAGTGAGACTTCAAATCCCATCTTCCTAA
* * * * * ** *
25834076 TGAGGTACAGAGAAGTGGGTCAAAATAAAGCGGATTTCAACGTCTTTGAGGTTACAATAGAGTGG
320 TGAGGTACAGAGAAGTGAGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTAGAGTGG
* * ** * *
25834141 AGTGAAGCACTAGAATTCTATACCCCTGAGTTACAGTGGGTTAAATGAAAATAATGAAGTAGTGC
385 AGTGAAGCACCAGAATCCTATACCCCTGAGTTACAGTGGGTCGAATGAAAATAAAGAAGTAGAGC
* * * * * ** *
25834206 TCAACGT-CTCTGAGGTTAGAGTAAAGTGGAGTGAGACTTCACATCCTATCCTCCTAGTCAGGT-
450 TCAACGTCCT-TGAGGTTATAATAGAGTGGAGTGAGACTTCAAATCCCATATTCCTAGTGAGGTG
* * * * *
25834269 ----ATAGTGGGTCAAAACAAAGCGGATCTCAACGTCCCAA
514 CAGAAAAGTGAGTCAAAACAAAGCAGATCTCAACGTCACTA
** * * * * *
25834306 AGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTGTACC-CTTGAGGTT-TTGTAGGTCGGAT
1 AGGTTACAATGGAGTGGAGTGAAGAACCAAAATCCTATACCGC-TGA-GTTGTAGTGGGTCGGAT
* * * *
25834369 GAAAATAATGAAGCAGAGCATAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCG
64 GAAAATAATGAAGCAGAGC-TAAAGTCCCTAAGGTTACAGTGGAGTGGA-T-TGA---CAAATCC
* * * * * * * *
25834434 AATCTTTCTGGTGAGGTACAGAGGAGTGGATTAAAACAGGTAGCAAATCTTAGA-GTCCTTGAGG
123 CATCTTTCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--AAGCAGATCTCA-ACGTCCCTAAGG
* * *
25834498 TTACT-GTAGAGTGCAGTGAAGCA-TCAGAATCCTATACGCCTGAGTTGTAGTGGGTCGGATGAA
185 TTA-TAGTAGAGTGGAGTGAAGCACT-AGAATCTTATAC-CCTGAGTTGCAGTGGGTCGGATGAA
* * * * *
25834561 AATAATAAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGAAGTGAGACTTTAAATCCCAT
247 AATAATGAAGCAGAGCTCAACGTCCCAGAGGTTACAGAGGAGTGAAGTGAGACTTCAAATCCCAT
* ** * *
25834626 CTTTCTGGTGAGATACAGAGAAGTGAGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTATAG
312 CTTCCTAATGAGGTACAGAGAAGTGAGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAG
* * * *
25834691 TAGAGTGGAGTGAAGCGCTAGAATCTTATACCCCTAAGTTACAGTGGGTCGAATGAAAATAAAGA
377 TAGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTACAGTGGGTCGAATGAAAATAAAGA
* * * * *
25834756 AGTAGAGCTCAATGTCCTTCAGGTTACAATGGAGTGGAGTGAGACTTCAAATCCCAAATTCCTAG
442 AGTAGAGCTCAACGTCCTTGAGGTTATAATAGAGTGGAGTGAGACTTCAAATCCCATATTCCTAG
* * * *
25834821 TGAGATGCAGAGAAGTGAGTTAAAACAAAGCAGATCTCAACATCACTA
507 TGAGGTGCAGAAAAGTGAGTCAAAACAAAGCAGATCTCAACGTCACTA
* * ** *
25834869 AGGTTACAATGGATTGCAAAGAAGAACCAAAATCTTATACCGCTGAGTTGTAGTGGGTCGGATGA
1 AGGTTACAATGGAGTGGAGTGAAGAACCAAAATCCTATACCGCTGAGTTGTAGTGGGTCGGATGA
*
25834934 AAATAATGAAGCAGAGCTTAATA-TCCCTATGGTTACAGTGGAGTG
66 AAATAATGAAGCAGAGC-TAA-AGTCCCTAAGGTTACAGTGGAGTG
25834979 AAGCATCAGA
Statistics
Matches: 1949, Mismatches: 351, Indels: 112
0.81 0.15 0.05
Matches are distributed among these distances:
553 116 0.06
554 5 0.00
555 2 0.00
557 11 0.01
558 490 0.25
559 15 0.01
560 151 0.08
561 3 0.00
562 11 0.01
563 222 0.11
564 519 0.27
565 235 0.12
567 1 0.00
568 2 0.00
569 166 0.09
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (554 bp):
AGGTTACAATGGAGTGGAGTGAAGAACCAAAATCCTATACCGCTGAGTTGTAGTGGGTCGGATGA
AAATAATGAAGCAGAGCTAAAGTCCCTAAGGTTACAGTGGAGTGGATTGACAAATCCCATCTTTC
TGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTAAGGTTATAGTAGAG
TGGAGTGAAGCACTAGAATCTTATACCCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGA
GCTCAACGTCCCAGAGGTTACAGAGGAGTGAAGTGAGACTTCAAATCCCATCTTCCTAATGAGGT
ACAGAGAAGTGAGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAA
GCACCAGAATCCTATACCCCTGAGTTACAGTGGGTCGAATGAAAATAAAGAAGTAGAGCTCAACG
TCCTTGAGGTTATAATAGAGTGGAGTGAGACTTCAAATCCCATATTCCTAGTGAGGTGCAGAAAA
GTGAGTCAAAACAAAGCAGATCTCAACGTCACTA
Found at i:25835099 original size:462 final size:463
Alignment explanation
Indices: 25834507--25835418 Score: 1135
Period size: 462 Copynumber: 2.0 Consensus size: 463
25834497 GTTACTGTAG
* *
25834507 AGTGCAGTGAAGCATCAGAATCCTATACGCCTGAGTTGTAGTGGGTCGGATGAAAATAATAAAGT
1 AGTGCAGTGAAGCATCAGAATCCTATACCCCTGAGTTGCAGTGGGTCGGATGAAAATAATAAAGT
* * * *
25834572 AGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGAAGTGAGACTTTAAATCCCATCTTTCTGGTGA
66 AAAGCTCAACGTCCCTAAGGTTACAGTGGAGTGAAGTGAGACTTCAAATCCCATCTCTCTGGTGA
* *
25834637 GATACAGAGAAGTGAGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTATAGTAGAGTGGAGT
131 GATACAGAGAAGTG-GTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTAAAGTAGAGTGGAGT
* * * *
25834702 GAAGCGCTAGAA-TCT-TATACCCCTAAGTTA-CAGTGGGTCGAATGAAAATAAAGAAGTAGAGC
195 GAAGCACAAGAATTCTATA-ACCCCTAAG-TAGCAGTCGGTCGAATGAAAATAAAGAAGCAGAGC
* * * *
25834764 TCAATGTCCTTC-AGGTTACAATGGAGTGGAGTGAGACTTCAAATCCCAAATTCCTAGTGA-GAT
258 TCAACGT--TTCGAGGTTACAATGAAGTGGAGTGAAACTTCAAATCCCAAATTCCTAATGATG-T
* *
25834827 GCAGAGAAGTGAGTTAAAACAA-AGCAGATCTCAACATCACTAAGGTTACAA-TGGATTGCAAAG
320 ACAGAGAAGTGAGTTAAAACAAGAGCAGATCTCAACATCACTAAGGTT-CAAGTGGAGTGCAAAG
* * *
25834890 AAGAACCAAAATCTTATAC-CGCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCAGAGCTTA
384 AAGAACCAAAATCCTATACTC-CTGAGTTGTAGTGGGTCGAATAAAAATAATGAAGCAGAGCTTA
25834954 ATATCCCTATGGTTAC
448 ATATCCCTATGGTTAC
* * * *
25834970 AGTGGAGTGAAGCATCAGAATCCTATACCCCTGAGTTGCAGTGGGTTGGATG-AAGTAATGAAGT
1 AGTGCAGTGAAGCATCAGAATCCTATACCCCTGAGTTGCAGTGGGTCGGATGAAAATAATAAAGT
*** *
25835034 AAAGCTCAACGTTTTTAAGGTTACAGTGGAGT-AGAGTGAGACTTCAAATCCTATCTC-CTTGGT
66 AAAGCTCAACGTCCCTAAGGTTACAGTGGAGTGA-AGTGAGACTTCAAATCCCATCTCTC-TGGT
* * *
25835097 GAGGTACAGAGAAGTGGTCAAAGCAAAGCAGATCTCAACGTCCCTGAGGTTAAAGTGGAGTGGAG
129 GAGATACAGAGAAGTGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTAAAGTAGAGTGGAG
* * * * * *
25835162 TGAAGCACAAGAATTCTATAACCCTTTAGTAGCAGTCGGTCGGATGAAAATAATGACGCAGGGCT
194 TGAAGCACAAGAATTCTATAACCCCTAAGTAGCAGTCGGTCGAATGAAAATAAAGAAGCAGAGCT
** * **
25835227 CAACGTTTCTGAGGTTACGGTGAAGTGGAGTGAAACTTCAAATCTCATCTTCCTAATGATGTACA
259 CAACGTTTC-GAGGTTACAATGAAGTGGAGTGAAACTTCAAATCCCAAATTCCTAATGATGTACA
* * * * * * * **
25835292 GATAAGTGAGTTAAAATAAGTAGTAGATCTTAACGTCCCTAAGGTTCAAGTGGAGTGGAGTGAAG
323 GAGAAGTGAGTTAAAACAAG-AGCAGATCTCAACATCACTAAGGTTCAAGTGGAGTGCAAAGAAG
* * * *
25835357 CACCAGAATCCTATACTCTTGAGTTGTAGTGGGTCGAATAAAAATAATGAAGTAGAGCTTAA
387 AACCAAAATCCTATACTCCTGAGTTGTAGTGGGTCGAATAAAAATAATGAAGCAGAGCTTAA
25835419 CGTCCCAGAG
Statistics
Matches: 381, Mismatches: 56, Indels: 23
0.83 0.12 0.05
Matches are distributed among these distances:
460 3 0.01
461 60 0.16
462 178 0.47
463 54 0.14
464 85 0.22
465 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (463 bp):
AGTGCAGTGAAGCATCAGAATCCTATACCCCTGAGTTGCAGTGGGTCGGATGAAAATAATAAAGT
AAAGCTCAACGTCCCTAAGGTTACAGTGGAGTGAAGTGAGACTTCAAATCCCATCTCTCTGGTGA
GATACAGAGAAGTGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTAAAGTAGAGTGGAGTG
AAGCACAAGAATTCTATAACCCCTAAGTAGCAGTCGGTCGAATGAAAATAAAGAAGCAGAGCTCA
ACGTTTCGAGGTTACAATGAAGTGGAGTGAAACTTCAAATCCCAAATTCCTAATGATGTACAGAG
AAGTGAGTTAAAACAAGAGCAGATCTCAACATCACTAAGGTTCAAGTGGAGTGCAAAGAAGAACC
AAAATCCTATACTCCTGAGTTGTAGTGGGTCGAATAAAAATAATGAAGCAGAGCTTAATATCCCT
ATGGTTAC
Found at i:25835205 original size:275 final size:276
Alignment explanation
Indices: 25834694--25835222 Score: 617
Period size: 275 Copynumber: 1.9 Consensus size: 276
25834684 GTTATAGTAG
*
25834694 AGTGGAGTGAAGCGCTAGAATCTTATACCCCTAAGTTACAGTGGGTCGAATGAAAATAAAGAAGT
1 AGTGGAGTGAAGCGCTAGAATCCTATACCCCTAAGTTACAGTGGGTCGAATGAAAATAAAGAAGT
* * * *
25834759 AGAGCTCAATGTCCTTCAGGTTACAATGGAGTGGAGTGAGACTTCAAATCCCAAATTCCTAGTGA
66 AAAGCTCAACGTCCTTAAGGTTACAATGGAGTAGAGTGAGACTTCAAATCCCAAATTCCTAGTGA
* * *
25834824 GATGCAGAGAAGTGAGTTAAAACAAAGCAGATCTCAACATCACTAAGGTTACAATGGATTGCAAA
131 GATACAGAGAAGTGAGTCAAAACAAAGCAGATCTCAACATCACTAAGGTTACAATGGAGTGCAAA
* * *
25834889 GAAGAACCAAAATCTTATACCGCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCAGAGCTTA
196 GAAGAACCAAAATCTTATACCGCTGAGTAGCAGTCGGTCGGATGAAAATAATGAAGCAGAGCTTA
25834954 ATATCCCTATGGTTAC
261 ATATCCCTATGGTTAC
* * * * * * *
25834970 AGTGGAGTGAAGC-ATCAGAATCCTATACCCCTGAGTTGCAGTGGGTTGGATG-AAGTAATGAAG
1 AGTGGAGTGAAGCGCT-AGAATCCTATACCCCTAAGTTACAGTGGGTCGAATGAAAATAAAGAAG
** * * *
25835033 TAAAGCTCAACGTTTTTAAGGTTACAGTGGAGTAGAGTGAGACTTCAAAT-CC-TATCTCCTTGG
65 TAAAGCTCAACGTCCTTAAGGTTACAATGGAGTAGAGTGAGACTTCAAATCCCAAAT-TCC-TAG
* * * * *
25835096 TGAGGTACAGAGAAGTG-GTCAAAGCAAAGCAGATCTCAACGTCCCTGAGGTTA-AAGTGGAGTG
128 TGAGATACAGAGAAGTGAGTCAAAACAAAGCAGATCTCAACATCACTAAGGTTACAA-TGGAGTG
* ** * * *
25835159 GAGTGAAGCA-CAAGAAT-TCTATAACC-CTTTAGTAGCAGTCGGTCGGATGAAAATAATGACGC
192 CAAAGAAGAACCAA-AATCT-TAT-ACCGC-TGAGTAGCAGTCGGTCGGATGAAAATAATGAAGC
25835221 AG
253 AG
25835223 GGCTCAACGT
Statistics
Matches: 211, Mismatches: 34, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
273 8 0.04
274 55 0.26
275 104 0.49
276 44 0.21
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (276 bp):
AGTGGAGTGAAGCGCTAGAATCCTATACCCCTAAGTTACAGTGGGTCGAATGAAAATAAAGAAGT
AAAGCTCAACGTCCTTAAGGTTACAATGGAGTAGAGTGAGACTTCAAATCCCAAATTCCTAGTGA
GATACAGAGAAGTGAGTCAAAACAAAGCAGATCTCAACATCACTAAGGTTACAATGGAGTGCAAA
GAAGAACCAAAATCTTATACCGCTGAGTAGCAGTCGGTCGGATGAAAATAATGAAGCAGAGCTTA
ATATCCCTATGGTTAC
Found at i:25835539 original size:189 final size:187
Alignment explanation
Indices: 25834970--25836245 Score: 1185
Period size: 187 Copynumber: 6.8 Consensus size: 187
25834960 CTATGGTTAC
* * * * * * *
25834970 AGTGGAGTGAAGCATCAGAATCCTATACCCCTGAGTTGCAGTGGGTTGGAT-GAAGTAATGAAGT
1 AGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATAAAAATAATGAAGC
* *** * *
25835034 AAAGCTCAACGTTTTTA-AGGTTACAGTGGAGTAGAGTGAGACTTCAAATCCTATC-TCCTTGGT
66 AGAGCTCAACG-TCCCAGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTT-GT
* * * *
25835097 GAGGTACAGAGAAGT-GGTCAAAGCAAAGCAGATCTCAACGTCCCTGAGGTTAAAGTGG
129 GAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGCGG
* * * * * * * *
25835155 AGTGGAGTGAAGCACAAGAATTCTATAACCCTTTAGTAGCAGTCGGTCGGATGAAAATAATGACG
1 AGTGGAGTGAAGCACCAGAATCCTAT-ACCCTTGAGTTGTAGTGGGTCGGATAAAAATAATGAAG
* ** * * * * * **
25835220 CAGGGCTCAACGTTTCTGAGGTTACGGTGAAGTGGAGTGAAACTTCAAATCTCATCTTCCTAATG
65 CAGAGCTCAACGTCCCAGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTGTG
* * * * * * * *
25835285 ATGTACAGATAAGTGAGTTAAAATAAGTAGTAGATCTTAACGTCCCTAAGGTT-CAAGTGG
130 AGGTACAGAGAAGTGGGTTAAAACAA--AGCAGATCTCAACGTCCCTGAGGTTAC-AGCGG
* * *
25835345 AGTGGAGTGAAGCACCAGAATCCTATACTCTTGAGTTGTAGTGGGTCGAATAAAAATAATGAAGT
1 AGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATAAAAATAATGAAGC
* * * * * *
25835410 AGAGCTTAACGTCCCAGAGGTTACAATGGAGTGGTGTGAGACTTTAAATCCCATCTTGCTTATGA
66 AGAGCTCAACGTCCCAGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTGTGA
* * * **
25835475 GGTATAGAGAAGTGGGTTAAAACAGGTAAG-AGATCTCAACGTTCCT-ACGGTTATAGTAG
131 GGTACAGAGAAGTGGGTTAAAACA---AAGCAGATCTCAACGTCCCTGA-GGTTACAGCGG
* * * * *
25835534 AGTGGAGTGAAGCATCAGAATCCTATACCCCTAAGTTGTAGTGAGTCGGATGAAAATAATGAAGC
1 AGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATAAAAATAATGAAGC
* * * * * ** * * * *
25835599 AGAGCTTAATGT-CCATGAGGTTACAATAGAGTGGAGTTAGACTAGAAATCCAATTTTTCTGGTG
66 AGAGCTCAACGTCCCA-GAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTGTG
* * * *
25835663 AGGTACAAAGAAGTGGGTTAAAATAAAGC-GTATCTTAACGTCCCAGAGGTTACAGCGG
130 AGGTACAGAGAAGTGGGTTAAAACAAAGCAG-ATCTCAACGTCCCTGAGGTTACAGCGG
* * * * *
25835721 AGTGGAATTAAGCACCAGAATCCTATACCCTTGAGTTGTTGTGGGTTGGATAAAAGTAATGAAGC
1 AGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATAAAAATAATGAAGC
* * * *
25835786 AGAGCTCAATGTCTCTA-AGGTTACAATAGAGTGGAGTGAGACTTCAAATCCCATCTT-CTTGGT
66 AGAGCTCAACGTC-CCAGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTT-GT
* * * * * * *
25835849 GAGGTGCAGAGAAGTGGGTCAAAACAAAACAGATCTCAACATCCTTGAGGTTACAACAG
129 GAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGCGG
** * * ** *
25835908 AGTGGAGTGAAGCACCAGAATTTTATACCCCTGAGTTGTAATGGGTTAGATAAAAATAATGAAGT
1 AGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATAAAAATAATGAAGC
* * * * ** * * * * *
25835973 AGTGCTCAACGTCTCTGAGGTTATAGTAAAGTGGAGTGAGACTTCACATCCTATCCTCCTAGTCA
66 AGAGCTCAACGTCCCAGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTGTGA
* ** * *
25836038 GGTATAGAGAAGTGGGTCGAAACAAAGCGGA-CTCAACGTCCCTGAGGTTACAACGG
131 GGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGCGG
* * *
25836094 AGTGGAGTGAAGCACTAGAATCCTATACCCCTATG-GTT-TTGTGGGTTGGATAAAAATAATGAA
1 AGTGGAGTGAAGCACCAGAATCCTATA-CCCT-TGAGTTGTAGTGGGTCGGATAAAAATAATGAA
* * * * *
25836157 GCAAAGCACAACGTCCCTGAGGTTACAGTGTAGTGGAGTGAGACTTCAAATCCAATCTTCCTTGT
64 GCAGAGCTCAACGTCCCAGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTGT
*
25836222 GAGGTACAGAGGAGTGGGTTAAAA
129 GAGGTACAGAGAAGTGGGTTAAAA
25836246 TCGATAGCAG
Statistics
Matches: 886, Mismatches: 180, Indels: 49
0.79 0.16 0.04
Matches are distributed among these distances:
185 23 0.03
186 169 0.19
187 367 0.41
188 21 0.02
189 252 0.28
190 53 0.06
192 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (187 bp):
AGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATAAAAATAATGAAGC
AGAGCTCAACGTCCCAGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTGTGA
GGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGCGG
Found at i:25835700 original size:376 final size:369
Alignment explanation
Indices: 25834970--25836245 Score: 1272
Period size: 376 Copynumber: 3.4 Consensus size: 369
25834960 CTATGGTTAC
* * * * * *
25834970 AGTGGAGTGAAGCATCAGAATCCTATACCCCTGAGTTGCAGTGGGTTGGAT-GAAGTAATGAAGT
1 AGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTTGGATAAAAATAATGAAGC
*** * * *
25835034 AAAGCTCAACGTTTTTAAGGTTACAGTGGAGTAGAGTGAGACTTCAAATCCTATC-TCCTTGGTG
66 AAAGCTCAACG-TCCCAAGGTTACAATGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTGGTG
* * *
25835098 AGGTACAGAGAAGT-GGTCAAAGCAAAGCAGATCTCAACGTCCCTGAGGTTAAAGTGGAGTGGAG
130 AGGTACAGAGAAGTGGGTCAAAACAAAG-AGATCTCAACGTTCCTGAGGTTAAAGTAGAGTGGAG
* * * * * *
25835162 TGAAGCACAAGAATTCTATAACCCTTTAGTAGCAGTCGGTCGGATGAAAATAATGACGCAGGGCT
194 TGAAGCAC-AGAATTCTAT-ACCCCTAAGTTGTAGT-GGTCGGATGAAAATAATGAAGCAGAGCT
* * * * *
25835227 CAACGTTTCTGAGGTTACGGT-GAAGTGGAGTGAAACTTCAAATCTCATCTTCCTAATGATGTAC
256 CAACG-TCCTGAGGTTACAGTAG-AGTGGAGTGAGACTTCAAATC-CATCTTCCTAGTGAGGTAC
* * * *
25835291 AGATAAGTGAGTTAAAAT-AAGTAGTAGATCTTAACGTCCCTAAGGTTCAAGTGG
318 AGAGAAGTGGGTTAAAATAAAG-CGT--ATCTTAACGTCCCTAAGGTTCAAGCGG
* * * *
25835345 AGTGGAGTGAAGCACCAGAATCCTATACTCTTGAGTTGTAGTGGGTCGAATAAAAATAATGAAGT
1 AGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTTGGATAAAAATAATGAAGC
* * * * * *
25835410 AGAGCTTAACGTCCCAGAGGTTACAATGGAGTGGTGTGAGACTTTAAATCCCATCTTGCTT-ATG
66 AAAGCTCAACGTCCCA-AGGTTACAATGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTGGTG
* * *
25835474 AGGTATAGAGAAGTGGGTTAAAACAGGTAAGAGATCTCAACGTTCCT-ACGGTTATAGTAGAGTG
130 AGGTACAGAGAAGTGGGTCAAAACA---AAGAGATCTCAACGTTCCTGA-GGTTAAAGTAGAGTG
*
25835538 GAGTGAAGCATCAGAATCCTATACCCCTAAGTTGTAGTGAGTCGGATGAAAATAATGAAGCAGAG
191 GAGTGAAGCA-CAGAATTCTATACCCCTAAGTTGTAGTG-GTCGGATGAAAATAATGAAGCAGAG
* * * * ** * * *
25835603 CTTAATGTCCATGAGGTTACAATAGAGTGGAGTTAGACTAGAAATCCAATTTTTCTGGTGAGGTA
254 CTCAACGTCC-TGAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTAGTGAGGTA
*
25835668 CAAAGAAGTGGGTTAAAATAAAGCGTATCTTAACGTCCC-AGAGGTT-ACAGCGG
317 CAGAGAAGTGGGTTAAAATAAAGCGTATCTTAACGTCCCTA-AGGTTCA-AGCGG
* * * *
25835721 AGTGGAATTAAGCACCAGAATCCTATACCCTTGAGTTGTTGTGGGTTGGATAAAAGTAATGAAGC
1 AGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTTGGATAAAAATAATGAAGC
* * * *
25835786 AGAGCTCAATGTCTCTAAGGTTACAATAGAGTGGAGTGAGACTTCAAATCCCATCTT-CTTGGTG
66 AAAGCTCAACGTC-CCAAGGTTACAATGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTGGTG
* * * *
25835850 AGGTGCAGAGAAGTGGGTCAAAACAAAACAGATCTCAAC-ATCCTTGAGGTTACAA-CAGAGTGG
130 AGGTACAGAGAAGTGGGTCAAAAC-AAAGAGATCTCAACGTTCC-TGAGGTTA-AAGTAGAGTGG
* * * ** * * *
25835913 AGTGAAGCACCAGAATTTTATACCCCTGAGTTGTAATGGGTTAGATAAAAATAATGAAGTAGTGC
192 AGTGAAGCA-CAGAATTCTATACCCCTAAGTTGTAGT-GGTCGGATGAAAATAATGAAGCAGAGC
* * * * * *
25835978 TCAACGTCTCTGAGGTTATAGTAAAGTGGAGTGAGACTTCACATCCTATCCTCCTAGTCAGGTAT
255 TCAACGTC-CTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTAGTGAGGTAC
** * * * *
25836043 AGAGAAGTGGGTCGAAACAAAGCGGA-CTCAACGTCCCTGAGGTTACAA-CGG
318 AGAGAAGTGGGTTAAAATAAAGCGTATCTTAACGTCCCTAAGGTT-CAAGCGG
* *
25836094 AGTGGAGTGAAGCACTAGAATCCTATACCCCTATG-GTT-TTGTGGGTTGGATAAAAATAATGAA
1 AGTGGAGTGAAGCACCAGAATCCTATA-CCCT-TGAGTTGTAGTGGGTTGGATAAAAATAATGAA
* * * * *
25836157 GCAAAGCACAACGTCCCTGAGGTTACAGTGTAGTGGAGTGAGACTTCAAATCCAATCTTCCTT-G
64 GCAAAGCTCAACGTCCC-AAGGTTACAATGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTGG
* *
25836221 TGAGGTACAGAGGAGTGGGTTAAAA
128 TGAGGTACAGAGAAGTGGGTCAAAA
25836246 TCGATAGCAG
Statistics
Matches: 747, Mismatches: 123, Indels: 64
0.80 0.13 0.07
Matches are distributed among these distances:
372 1 0.00
373 140 0.19
374 157 0.21
375 59 0.08
376 218 0.29
377 19 0.03
378 98 0.13
379 51 0.07
380 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (369 bp):
AGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTTGGATAAAAATAATGAAGC
AAAGCTCAACGTCCCAAGGTTACAATGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTGGTGA
GGTACAGAGAAGTGGGTCAAAACAAAGAGATCTCAACGTTCCTGAGGTTAAAGTAGAGTGGAGTG
AAGCACAGAATTCTATACCCCTAAGTTGTAGTGGTCGGATGAAAATAATGAAGCAGAGCTCAACG
TCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCCATCTTCCTAGTGAGGTACAGAGAAGT
GGGTTAAAATAAAGCGTATCTTAACGTCCCTAAGGTTCAAGCGG
Found at i:25836611 original size:6 final size:6
Alignment explanation
Indices: 25836600--25836645 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
25836590 ATTGTAAAAT
25836600 ATTATA ATTATA ATTAT- A--ATA ATTATA ATTATA ATTATA ATTATA
1 ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA
25836645 A
1 A
25836646 AAAATAACGT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 2 0.05
4 1 0.03
5 1 0.03
6 33 0.89
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
ATTATA
Found at i:25836623 original size:15 final size:15
Alignment explanation
Indices: 25836603--25836645 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
25836593 GTAAAATATT
25836603 ATAATTATAATTATA
1 ATAATTATAATTATA
25836618 ATAATTATAA-T-T-
1 ATAATTATAATTATA
25836630 ATAATTATAATTATA
1 ATAATTATAATTATA
25836645 A
1 A
25836646 AAAATAACGT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 10 0.40
13 2 0.08
14 2 0.08
15 11 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATAATTATAATTATA
Found at i:25836624 original size:21 final size:21
Alignment explanation
Indices: 25836600--25836640 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
25836590 ATTGTAAAAT
25836600 ATTATAATTATAATTATAATA
1 ATTATAATTATAATTATAATA
25836621 ATTATAATTATAATTATAAT
1 ATTATAATTATAATTATAAT
25836641 TATAAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
ATTATAATTATAATTATAATA
Found at i:25838654 original size:12 final size:12
Alignment explanation
Indices: 25838637--25838667 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
25838627 CTTACCAGCT
25838637 GAATGCAAGTTG
1 GAATGCAAGTTG
25838649 GAATGCAAGTTG
1 GAATGCAAGTTG
25838661 GAATGCA
1 GAATGCA
25838668 TAAAATTCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.10, G:0.32, T:0.23
Consensus pattern (12 bp):
GAATGCAAGTTG
Found at i:25840312 original size:19 final size:19
Alignment explanation
Indices: 25840290--25840354 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 19
25840280 CTTTATTGAT
25840290 AAATTTATAATAATATTTA
1 AAATTTATAATAATATTTA
25840309 AAA--T-TAATAATA---A
1 AAATTTATAATAATATTTA
*
25840322 AGAATTTACAATAATATTTA
1 A-AATTTATAATAATATTTA
*
25840342 AAATTAATAATAA
1 AAATTTATAATAA
25840355 ACTATCACTA
Statistics
Matches: 36, Mismatches: 3, Indels: 14
0.68 0.06 0.26
Matches are distributed among these distances:
13 2 0.06
14 2 0.06
16 9 0.25
17 8 0.22
19 13 0.36
20 2 0.06
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
AAATTTATAATAATATTTA
Found at i:25840329 original size:33 final size:33
Alignment explanation
Indices: 25840291--25840355 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
25840281 TTTATTGATA
*
25840291 AATTTATAATAATATTTAAAATTAATAATAAAG
1 AATTTACAATAATATTTAAAATTAATAATAAAG
25840324 AATTTACAATAATATTTAAAATTAATAATAAA
1 AATTTACAATAATATTTAAAATTAATAATAAA
25840356 CTATCACTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (33 bp):
AATTTACAATAATATTTAAAATTAATAATAAAG
Found at i:25842672 original size:189 final size:187
Alignment explanation
Indices: 25842237--25845303 Score: 2833
Period size: 187 Copynumber: 16.4 Consensus size: 187
25842227 TGAATCTCTG
** * * * * *
25842237 CCCCTGAGTTACAGTGGGTCGAATGAAAATAAAGAAGTAGAGCTCAACGTTCTTGAGGTTACAAT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* * * * * * *
25842302 GGAGTTGAGTGAGACTTCAAATCCCATATTCATAGTGAGATGCAGAGAAGT--GTATAAAA-AAA
66 GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGT-TAAAACATA
* * * * * * * * * * * *
25842364 ACAGGTCTCAACATCCGTAAGGTTATAGTAGATTGCAGAGAAGAACCAAAATCCTATA
130 GCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* * * * * *
25842422 CCGCTGAGTTGTAGTGAGTCGGATAAAAATAATGAAGCAGAGCTCAATGTCCCTAAGGTTACAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* * *
25842487 GGAGTGGAGTGAAACTTCAAATCCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTTAAAATAGGT
66 GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--T
* * * * * * *
25842552 AGCAGATCTCAATGTCCTTGAGGTTAAAATGGAGTAGAGTGAAGCACTAGATTCTTATA
129 AGCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
** * * * * *
25842611 CTTCTAAGTTGCAGTCGGTCGTATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* * * * * * * ** *
25842676 AGAGTGGTGCGAGACTTCAAATGCCATCTTCTTGGTGGGGCACAGAGAAGTGGGCCAAAACAAAG
66 GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACATAG
* * * * ** * *
25842741 CAGATCTCAACATCCTTGAGGTTACAATAGAGTGGAGTGAAGGATTAGAATTCTATG
131 CAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* *** * * *
25842798 CCCCTGAGTTGCAGTGGGTTAAATGAAAATAATGAAGTAGTGCTCAATGTCCTTGAGGTTACAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
** * ** * * * * * *
25842863 AAAGTGGAGTGAGACTTCACATCTTATCATCCTAGTCAGGTATAGAGAAGTGGGTCAAAACAAAG
66 GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACATAG
* *
25842928 CAGATCTCAACGTCCTTGAGGTTACAATGGAGTGGAGTAAAGCACCAGAATCCTATA
131 CAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* * * * * *
25842985 CCCCTAAGTT-TTGTGGGTCGGATGAAAATAATGAAGCAGAGCACAACGTCCTTGAGGTTGCAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* ** * * * * *
25843049 GGAATGGAGTGAGACTTCAAATCGAATATTCCTGGTGAGGTATAGTGGAGTGGATTAAAACAGGT
66 GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--T
* * * * * * *
25843114 AGCAAATCTTAAAGTCCTTGAGGTTACTGTGAAGTGTAGTAAAGCACCAGAATCCTATA
129 AGCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* * *
25843173 CCCCTGAGTTGTAGTGGGTCAGATGAAAATAATAAAGTAGAGCTTAACGTCCCTGAGGTTACAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* * * * *
25843238 AGAGTGGAGTGAGACTTTAAATCCCATCTTCCTGGTGAGATACAGAGAAGTGAGTTAAAACAAAG
66 GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACATAG
* * * *
25843303 CGGATCTCAAC-T-CTCTGAGGTTATAGTGGAGCGGAGTGAAGCACTAGAATCCTATA
131 CAGATCTCAACGTCCT-TGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* ** * * * ** *
25843359 CCTCTGAGTTACAGTGGGTCGAATGAAAATAAAGAAGTAGAGCTCAGCGTCTTTGAGGTTACAAT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* * * * * ** * *
25843424 AGAGTGGAGTGAGACTTCAAATCTCATAC-TCCTAGTGAGATGCAGAGAAGTCAGTCAAAACAAA
66 GGAGTGGAGTGAGACTTCAAATCCCAT-CTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACATA
* * * ** * *
25843488 GCAGATCTCAACATCAC-TAAGGTTACAGTGGATTACAGAT-AAGAACCAAAATCCTATA
130 GCAGATCTCAACGTC-CTTGAGGTTACAGTGGAGTGGAG-TGAAGCACCAGAATCCTATA
* * * * * *
25843546 CCGCTGAGTTGTACTGGGTCGGATG-AAATAATAAAGCAGAGCTCAACGTCCCTAAGGTTATAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* * * * * * * * *
25843610 GGAGGGGAGTAAAAGTTTAAATCCGATCTTGCTGTTAAGGTACAGAGAAGTGGGTTAAAACAGGT
66 GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--T
* * * * * *
25843675 AGCAGATCTTAACGTCCCTT-AGGTTACAGTAGAGTAGAGTGAAGCACTAGATTCCTGTA
129 AGCAGATCTCAACGT-CCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* * * * * **
25843734 CCTCTAAGTTGCATTGGGTCGTATGAAAATAATGAAGTAGAGCTCAACGTCATTGAGGTTACAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
** * * * * *
25843799 GGAGTGGTTTGAGACTTCAAATCCCATCTTCTTGGTGAGGTATAGAGAAGTTGGTGAAAACAAAG
66 GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACATAG
* * * *
25843864 CAGATCTCAACATCCTTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAATTCTATA
131 CAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* *** * * *
25843921 CCCTTGAGTTGTAGTGGGTTAAATGAAAATAATGAAGCAGAGCTCAAAGTCTCTGAGGTTACAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
** * * * * ** * * *
25843986 AAAGTGGGGTGAGACTTCAAATCCTC-TCTTCCTAGTCAAGTATGGAGAAGTGGGTCAAAATAAA
66 GGAGTGGAGTGAGACTTCAAATCC-CATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACATA
* * * *
25844050 ACGGATCTCAACGTCCTTGAGATTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATA
130 GCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* * * * *
25844108 GCCCTAAGGTT-TTGTGGGTCAGATGAAAATAATGAAGCT-GAGCACAACGTCCCTGAGGTTACA
1 CCCCTGA-GTTGTAGTGGGTCGGATGAAAATAATGAAG-TAGAGCTCAACGTCCCTGAGGTTACA
* *
25844171 GTGGAGTGGAGTGAGACTTCAAAT-CCAGTCTTCCTGGTGAGGTACAAAGGAGTGGGTTAAAACA
64 GTGGAGTGGAGTGAGACTTCAAATCCCA-TCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAAC-
* * * **
25844235 AGTAGCAGATCTCAAAGTCCTTGAGGTTATAGTGGAGTGTAGTGAAGCACCAGAATTTTATA
127 A-TAGCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* * * * * *
25844297 CTCTTGAGTTGTAGTGGGTCGAATGAAACTAATAAAGTAGAGCTCAACGTCCTTGAGGTTACAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* * * * *
25844362 GGAGTAGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAAAAGTGAGTTAAAACAAAA
66 GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACATAG
** * * * *
25844427 TGGATCTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAGCACTAGAATCCTATA
131 CAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* * * * * * * * *
25844484 CCCCTAAGTTATAGTGGGTTGGATAAAAATATTGAAGCAGAGCTCAACGTCCTTAAGATTACAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* * * * * *
25844549 GGAGTGGAGTAAGACTTCAAATCTCATCTTTCC-AGTGAGGTACAGTGAAGTGAGATAAAACAGG
66 GGAGTGGAGTGAGACTTCAAATCCCATC-TTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--
* ** *
25844613 TAGTAGATCTCAA-GATCCTTGAGGTTACAGTGGAGTGGAGTGAAGCAATAAAATCCTATA
128 TAGCAGATCTCAACG-TCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* ** * * * * *
25844673 CCCTTGAGTTACAGTGGCTTGGATGAAAATAATGAAGGAGAGCTCAACGTCCCTAAGATTACAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* * * * * * *
25844738 AGAGTAGAGTGAGGCTTCAAATCCCATCTTCCTAGTGAGGTGCAGAGAAGTGGGTCAAAATA-AT
66 GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACATA-
* * * * * * *
25844802 GCATATCTGAATGTTCTTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAATTCTATA
130 GCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* * * * * *
25844860 CCCCTGAGTTATAGTGGGTCGTATGAAAATAATAAAGTAGAGCTAAATGTCCCTGAGGTTATAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* * *
25844925 GGAGTTGAGTGAGACTTCAAATCCCATCTTCCTTGTGAGGTACAGAGAAGTGGGTTAAAATAGGT
66 GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--T
* * * *
25844990 AGCAGATCTCAACGTCCCTGAGATTATAGTGGAGTGGAGTGAACCACCAGAATCCTATA
129 AGCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* * * ** * * * *** * * *
25845049 CTCTTAAGTTACAATGGGTC-GACTGAAAATAATGAAGTAGAGCTCCAGGTTTTTAAGGTCAAAG
1 CCCCTGAGTTGTAGTGGGTCGGA-TGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAG
* * * * * ** * *
25845113 TGGAGTGAAGTGAGACCTCAAGTCCTATTTTATTGGTGAGGTACAGAGAAGTGAGTTAGAATCGA
65 TGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTA-AAAC-A
** * *
25845178 TAATAGATCTCAACGTCCATGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
128 TAGCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
* ** * * * * *
25845238 CCCTTGAGTTACAGTGGGTTGGATGAAAATAATGGAGTAGAGTTTAACGTCCATGAGGTTACAGT
1 CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
25845303 G
66 G
25845304 AAATGGATTG
Statistics
Matches: 2335, Mismatches: 501, Indels: 88
0.80 0.17 0.03
Matches are distributed among these distances:
185 100 0.04
186 331 0.14
187 875 0.37
188 146 0.06
189 874 0.37
190 8 0.00
191 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (187 bp):
CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
GGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACATAG
CAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
Found at i:25843022 original size:93 final size:93
Alignment explanation
Indices: 25842925--25843247 Score: 260
Period size: 93 Copynumber: 3.4 Consensus size: 93
25842915 GGTCAAAACA
* *
25842925 AAGCAGATCTCAACGTCCTTGAGGTTACAATGGAGTGGAGTAAAGCACCAGAATCCTATACCCCT
1 AAGCAGAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTAAAGCACCAGAATCCTATACCCCT
*
25842990 AAGTTTTGTGGGTCGGATGAAAATAATG
66 AAGTTTAGTGGGTCGGATGAAAATAATG
* * * * * *
25843018 AAGCAGAGCACAACGTCCTTGAGGTTGCAGTGGAATGGAGT-GAG-ACTTCA-AATCGAATATTC
1 AAGCAGAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTAAAGCAC--CAGAATC--CTATAC
** * * * * *
25843080 CTGGTGAGGTATAGTGGAGT-GGATTAAAA-CAGG
62 C-CCT-AAGTTTAGTGG-GTCGGATGAAAATAATG
* * * * * * * *
25843113 TAGCAAATCTTAAAGTCCTTGAGGTTACTGTGAAGTGTAGTAAAGCACCAGAATCCTATACCCCT
1 AAGCAGAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTAAAGCACCAGAATCCTATACCCCT
* * *
25843178 GAGTTGTAGTGGGTCAGATGAAAATAATA
66 AAGTT-TAGTGGGTCGGATGAAAATAATG
* * * *
25843207 AAGTAGAGCTTAACGTCCCTGAGGTTACAGTAGAGTGGAGT
1 AAGCAGAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGT
25843248 GAGACTTTAA
Statistics
Matches: 167, Mismatches: 50, Indels: 25
0.69 0.21 0.10
Matches are distributed among these distances:
91 2 0.01
92 10 0.06
93 52 0.31
94 42 0.25
95 35 0.21
96 22 0.13
97 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (93 bp):
AAGCAGAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTAAAGCACCAGAATCCTATACCCCT
AAGTTTAGTGGGTCGGATGAAAATAATG
Found at i:25844324 original size:376 final size:374
Alignment explanation
Indices: 25842238--25845303 Score: 2779
Period size: 376 Copynumber: 8.2 Consensus size: 374
25842228 GAATCTCTGC
* * * * * *
25842238 CCCTGAGTTACAGTGGGTCGAATGAAAATAAAGAAG-TAGAGCTCAACGTTCTTGAGGTTACAAT
1 CCCTAAGTTATAGTGGGTCGTATGAAAATAATGAAGCT-GAGCTCAACGTCCTTGAGGTTACAGT
* * * * * *
25842302 GGAGTTGAGTGAGACTTCAAATCCCATATTCATAGTGAGATGCAGAGAAGT--GTATAAAA-AA-
65 GGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTACAGAGAAGTGGGT-TAAAACAAG
* * * * * * * * * * *
25842363 -AACAGGTCTCAACA-TCCGTAAGGTTATAGTAGATTGCAGAGAAGAACCAAAATCCTATACCGC
128 TAGCAGATCTCAA-AGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACC-C
* * * * * * *
25842426 -TGAGTTGTAGTGAGTCGGATAAAAATAATGAAGCAGAGCTCAATGTCCCTAAGGTTACAGTGGA
191 TTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGA
* * * * *
25842490 GTGGAGTGAAACTTCAAATCCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGC
256 GTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACA--AAGC
* * * * * *
25842555 AGATCTCAATGTCCTTGAGGTTAAAATGGAGTAGAGTGAAGCACTAGATTCTTATA
319 AGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATA
* ** * * *
25842611 CTTCTAAGTTGCAGTCGGTCGTATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGT
1 C-CCTAAGTTATAGTGGGTCGTATGAAAATAATGAAGCTGAGCTCAACGTCCTTGAGGTTACAGT
* * * * * * **
25842676 AGAGTGGTGCGAGACTTCAAATGCCATCTTCTTGGTGGGGCACAGAGAAGTGGGCCAAAACAA--
65 GGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAGT
* * * ** * * *
25842739 AGCAGATCTCAACA-TCCTTGAGGTTACAATAGAGTGGAGTGAAGGATTAGAATTCTATGCCCCT
129 AGCAGATCTCAA-AGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTT
* ** * * * *
25842803 GAGTTGCAGTGGGTTAAATGAAAATAATGAAGTAGTGCTCAATGTCCTTGAGGTTACAGTAAAGT
193 GAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGT
* ** * * * *
25842868 GGAGTGAGACTTCACATCTTATCATCCTAGTCAGGTATAGAGAAGTGGGTCAAAACAAAGCAGAT
258 GGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGAT
* * *
25842933 CTCAACGTCCTTGAGGTTACAATGGAGTGGAGTAAAGCACCAGAATCCTATA
323 CTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATA
* * * * *
25842985 CCCCTAAGTT-TTGTGGGTCGGATGAAAATAATGAAGCAGAGCACAACGTCCTTGAGGTTGCAGT
1 -CCCTAAGTTATAGTGGGTCGTATGAAAATAATGAAGCTGAGCTCAACGTCCTTGAGGTTACAGT
* * * * * * * *
25843049 GGAATGGAGTGAGACTTCAAATCGAATATTCCTGGTGAGGTATAGTGGAGTGGATTAAAACAGGT
65 GGAGTGGAGTGAGACTTCAAATC-CATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAGT
* * * * * * *
25843114 AGCAAATCTTAAAGTCCTTGAGGTTACTGTGAAGTGTAGTAAAGCACCAGAATCCTATACCCCTG
129 AGCAGATCTCAAAGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTG
* *
25843179 AGTTGTAGTGGGTC-AGATGAAAATAATAAAGTAGAGCTTAACGTCCCTGAGGTTACAGTAGAGT
194 AGTTGTAGTGGGTCGA-ATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGT
* * * * *
25843243 GGAGTGAGACTTTAAATCCCATCTTCCTGGTGAGATACAGAGAAGTGAGTTAAAACAAAGCGGAT
258 GGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGAT
* *
25843308 CTCAAC-T-CTCTGAGGTTATAGTGGAGCGGAGTGAAGCACTAGAATCCTATA
323 CTCAACGTCCT-TGAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATA
* * * * * * *
25843359 CCTCTGAGTTACAGTGGGTCGAATGAAAATAAAGAAG-TAGAGCTCAGCGTCTTTGAGGTTACAA
1 CC-CTAAGTTATAGTGGGTCGTATGAAAATAATGAAGCT-GAGCTCAACGTCCTTGAGGTTACAG
* * * * ** *
25843423 TAGAGTGGAGTGAGACTTCAAATCTCATAC-TCCTAGTGAGATGCAGAGAAGTCAGTCAAAACAA
64 TGGAGTGGAGTGAGACTTCAAATC-CAT-CTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAA
* * ** * *
25843487 --AGCAGATCTCAACA-TCAC-TAAGGTTACAGTGGATTACAGAT-AAGAACCAAAATCCTATAC
127 GTAGCAGATCTCAA-AGTC-CTTGAGGTTACAGTGGAGTGGAG-TGAAGCACCAGAATCCTATAC
* * * * * *
25843547 CGC-TGAGTTGTACTGGGTCGGATG-AAATAATAAAGCAGAGCTCAACGTCCCTAAGGTTATAGT
189 C-CTTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGT
* * * * * * * * *
25843610 GGAGGGGAGTAAAAGTTTAAATCCGATCTTGCT-GTTAAGGTACAGAGAAGTGGGTTAAAACAGG
253 AGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAG-TGAGGTACAGAGAAGTGGGTTAAAACA--
* * * * * *
25843674 TAGCAGATCTTAACGTCCCTT-AGGTTACAGTAGAGTAGAGTGAAGCACTAGATTCCTGTA
315 AAGCAGATCTCAACGT-CCTTGAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATA
** * *
25843734 CCTCTAAGTTGCATTGGGTCGTATGAAAATAATGAAG-TAGAGCTCAACGTCATTGAGGTTACAG
1 CC-CTAAGTTATAGTGGGTCGTATGAAAATAATGAAGCT-GAGCTCAACGTCCTTGAGGTTACAG
** * * * *
25843798 TGGAGTGGTTTGAGACTTCAAATCCCATCTTCTTGGTGAGGTATAGAGAAGTTGGTGAAAACAA-
64 TGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAG
* * *
25843862 -AGCAGATCTCAACA-TCCTTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAATTCTATACCCT
128 TAGCAGATCTCAA-AGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCT
** * * * *
25843925 TGAGTTGTAGTGGGTTAAATGAAAATAATGAAGCAGAGCTCAAAGTCTCTGAGGTTACAGTAAAG
192 TGAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAG
* * * ** * * * *
25843990 TGGGGTGAGACTTCAAATCCTC-TCTTCCTAGTCAAGTATGGAGAAGTGGGTCAAAATAAAACGG
257 TGGAGTGAGACTTCAAATCC-CATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAG
* * *
25844054 ATCTCAACGTCCTTGAGATTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATA
321 ATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATA
* * *
25844108 GCCCTAAGGTT-TTGTGGGTCAG-ATGAAAATAATGAAGCTGAGCACAACGTCCCTGAGGTTACA
1 -CCCTAA-GTTATAGTGGGTC-GTATGAAAATAATGAAGCTGAGCTCAACGTCCTTGAGGTTACA
* *
25844171 GTGGAGTGGAGTGAGACTTCAAATCCAGTCTTCCTGGTGAGGTACAAAGGAGTGGGTTAAAACAA
63 GTGGAGTGGAGTGAGACTTCAAATCCA-TCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAA
* * ** *
25844236 GTAGCAGATCTCAAAGTCCTTGAGGTTATAGTGGAGTGTAGTGAAGCACCAGAATTTTATACTCT
127 GTAGCAGATCTCAAAGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCT
* * * *
25844301 TGAGTTGTAGTGGGTCGAATGAAACTAATAAAGTAGAGCTCAACGTCCTTGAGGTTACAGTGGAG
192 TGAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAG
* * * * ***
25844366 TAGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAAAAGTGAGTTAAAACAAAATGGA
257 TGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGA
* * *
25844431 TCTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAGCACTAGAATCCTATA
322 TCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATA
* * * * * * *
25844484 CCCCTAAGTTATAGTGGGTTGGATAAAAATATTGAAGCAGAGCTCAACGTCCTTAAGATTACAGT
1 -CCCTAAGTTATAGTGGGTCGTATGAAAATAATGAAGCTGAGCTCAACGTCCTTGAGGTTACAGT
* * * * * *
25844549 GGAGTGGAGTAAGACTTCAAATCTCATCTTTCC-AGTGAGGTACAGTGAAGTGAGATAAAACAGG
65 GGAGTGGAGTGAGACTTCAAATC-CATC-TTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAG
* ** *
25844613 TAGTAGATCTC-AAGATCCTTGAGGTTACAGTGGAGTGGAGTGAAGCAATAAAATCCTATACCCT
128 TAGCAGATCTCAAAG-TCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCT
** * * * * * *
25844677 TGAGTTACAGTGGCTTGGATGAAAATAATGAAGGAGAGCTCAACGTCCCTAAGATTACAGTAGAG
192 TGAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAG
* * * * * * *
25844742 TAGAGTGAGGCTTCAAATCCCATCTTCCTAGTGAGGTGCAGAGAAGTGGGTCAAAATAATGCATA
257 TGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGA
* * * * * * *
25844807 TCTGAATGTTCTTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAATTCTATA
322 TCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATA
* * * * * *
25844860 CCCCTGAGTTATAGTGGGTCGTATGAAAATAATAAAG-TAGAGCTAAATGTCCCTGAGGTTATAG
1 -CCCTAAGTTATAGTGGGTCGTATGAAAATAATGAAGCT-GAGCTCAACGTCCTTGAGGTTACAG
* * * *
25844924 TGGAGTTGAGTGAGACTTCAAATCCCATCTTCCTTGTGAGGTACAGAGAAGTGGGTTAAAATAGG
64 TGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAG
* * * * * *
25844989 TAGCAGATCTCAACGTCCCTGAGATTATAGTGGAGTGGAGTGAACCACCAGAATCCTATACTCTT
128 TAGCAGATCTCAAAGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTT
* ** * * * * *** * * * *
25845054 AAGTTACAATGGGTCGACTGAAAATAATGAAGTAGAGCTCCAGGTTTTTAAGGTCAAAGTGGAGT
193 GAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGT
* * * * * ** * * * *
25845119 GAAGTGAGACCTCAAGTCCTATTTTATTGGTGAGGTACAGAGAAGTGAGTTAGAATCGATAA-TA
258 GGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGGGTTA-AAAC-A-AAGCA
* * *
25845183 GATCTCAACGTCCATGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATA
320 GATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATA
* * * * * * * *
25845238 CCCTTGAGTTACAGTGGGTTGGATGAAAATAATGGAG-TAGAGTTTAACGTCCATGAGGTTACAG
1 CCC-TAAGTTATAGTGGGTCGTATGAAAATAATGAAGCT-GAGCTCAACGTCCTTGAGGTTACAG
25845302 TG
64 TG
25845304 AAATGGATTG
Statistics
Matches: 2185, Mismatches: 449, Indels: 113
0.80 0.16 0.04
Matches are distributed among these distances:
371 1 0.00
372 86 0.04
373 167 0.08
374 357 0.16
375 482 0.22
376 974 0.45
377 17 0.01
378 100 0.05
379 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (374 bp):
CCCTAAGTTATAGTGGGTCGTATGAAAATAATGAAGCTGAGCTCAACGTCCTTGAGGTTACAGTG
GAGTGGAGTGAGACTTCAAATCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAGTAG
CAGATCTCAAAGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAG
TTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGA
GTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
AACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATA
Found at i:25844550 original size:94 final size:91
Alignment explanation
Indices: 25844432--25844749 Score: 257
Period size: 94 Copynumber: 3.4 Consensus size: 91
25844422 CAAAATGGAT
* * * *
25844432 CTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTAAGTTATA
1 CTCAACGTCCCTAAGATTACAGTGGAGTGGAGTGAAGCACTA-AATCCTATACCCCTGAGTTACA
25844497 GTGGGTTGGATAAAAATATTGAAGCAGAG
65 GTGGGTTGGAT-AAAATA-TGAAGCAGAG
* * * ** *
25844526 CTCAACGTCCTTAAGATTACAGTGGAGTGGAGT-AAG-ACTTCAAATCTCATCTTTCCAGTGAGG
1 CTCAACGTCCCTAAGATTACAGTGGAGTGGAGTGAAGCAC-T-AAATC-C-T-ATACCCCTGAGT
* * * * * *
25844589 TACAGTGAAG-TGAGATAAAACAGGTAGTAGAT
61 TACAGTG-GGTTG-GATAAAATATGAAGCAGAG
* * * * *
25844621 CTCAA-GATCCTTGAGGTTACAGTGGAGTGGAGTGAAGCAATAAAATCCTATACCCTTGAGTTAC
1 CTCAACG-TCCCTAAGATTACAGTGGAGTGGAGTGAAGCACT-AAATCCTATACCCCTGAGTTAC
* *
25844685 AGTGGCTTGGATGAAAATAATGAAGGAGAG
64 AGTGGGTTGGAT-AAAAT-ATGAAGCAGAG
* *
25844715 CTCAACGTCCCTAAGATTACAGTAGAGTAGAGTGA
1 CTCAACGTCCCTAAGATTACAGTGGAGTGGAGTGA
25844750 GGCTTCAAAT
Statistics
Matches: 173, Mismatches: 37, Indels: 28
0.73 0.16 0.12
Matches are distributed among these distances:
92 5 0.03
93 28 0.16
94 69 0.40
95 38 0.22
96 28 0.16
97 5 0.03
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (91 bp):
CTCAACGTCCCTAAGATTACAGTGGAGTGGAGTGAAGCACTAAATCCTATACCCCTGAGTTACAG
TGGGTTGGATAAAATATGAAGCAGAG
Found at i:25845296 original size:94 final size:94
Alignment explanation
Indices: 25845186--25845409 Score: 268
Period size: 94 Copynumber: 2.4 Consensus size: 94
25845176 GATAATAGAT
* * * *
25845186 CTCAACGTCCATGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACA
1 CTCAACGTCCATGAGGTTACAGTGGAGTGGAATGAAGCACCAAAATCCTATACCCCTGAGTTACA
* * ** * *
25845251 GTGGGTTGGATGAAAATAATGGAGTAGAG
66 ATAGGTCAGATGAAAATAATGAAGCAGAG
* * * * * *
25845280 TTTAACGTCCATGAGGTTACAGTGAAATGGATTGAAGCACCAAAATCTTATACCCCTGAGTTACA
1 CTCAACGTCCATGAGGTTACAGTGGAGTGGAATGAAGCACCAAAATCCTATACCCCTGAGTTACA
* *
25845345 ATAGGTCAGATGAAAGTAATGAAGCATAG
66 ATAGGTCAGATGAAAATAATGAAGCAGAG
**
25845374 CTCAACGTCTTTGAGGTTACAGTGGAGTGGAATGAA
1 CTCAACGTCCATGAGGTTACAGTGGAGTGGAATGAA
25845410 ACTTAAAATC
Statistics
Matches: 106, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
94 106 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25
Consensus pattern (94 bp):
CTCAACGTCCATGAGGTTACAGTGGAGTGGAATGAAGCACCAAAATCCTATACCCCTGAGTTACA
ATAGGTCAGATGAAAATAATGAAGCAGAG
Found at i:25845896 original size:846 final size:844
Alignment explanation
Indices: 25844432--25846159 Score: 1935
Period size: 846 Copynumber: 2.0 Consensus size: 844
25844422 CAAAATGGAT
* * * * *
25844432 CTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTAAGTTATA
1 CTCAACGT-CCTAAGGTTACAGTGAAGTGGAGTGAAGCACCAAAATCCTATACCCCTAAGTTACA
* * ** * *
25844497 GTGGGTTGGATAAAAATATTGAAGCAGAGCTCAACGTCCTTAAGATTACAGTGGAGTGGAGTAAG
65 ATAGGTCAGATAAAAATAATGAAGCAGAGCTCAACGTCCTTAAGATTACAGTGGAGTGGAATAAG
* * *
25844562 ACTTCAAATCTCATCTTTCCAGTGAGGTACAGTGAAGTGAGATAAAACAGGTAGTAGATCTCAAG
130 ACTTAAAATCTCATCTTTCCAGTAAGGTACAGAGAAGTGAGATAAAACAGGTAGTAGATCTCAAG
* *
25844627 ATCCTTGAGGTTACAGTGGAGTGGAGTGAAGCAATAAAATCCTATACCCTTGAGTTACAGTGGCT
195 ATCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAATAAAATCCTATACCCCTGAGTTACAGTGGCT
* *
25844692 TGGATGAAAATAATGAAGGAGAGCTCAACGTCCCTAAGATTACAGTAGAGTAGAGTGAGGCTTCA
260 CGGATGAAAATAATGAAGGAGAGCTCAACGTCCCTAAGATTACAGTAGAGTAGAGTGAGACTTCA
* * * * * * * * *
25844757 AATCCCATCTTCCTAGTGAGGTGCAGAGAAGTGGGTCAAAATAATGCATATCTGAATGTTCTTGA
325 AATCCCATCTT-CTAGTGAGGTACAAAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGA
* * * * * ***
25844822 GGTTACAATAGAGTGGAGTGAAGCACCAGAATTCTATACCCCTGAGTTATAGTGGGTCGTATGAA
389 GATTACAATAGAGTGGAGTGAAGAACCAAAATTCTACACCCCTGAGTTACAGTCAATCGTATGAA
* ** * * *
25844887 AATAATAAAGTAGAGCTAAATGTCCCTGAGGTTATAGTGGAGTTGAGTGAGACTTCAAATCCCAT
454 AATAATAAAGCAGAGCTAAACATCCCTAAGCTTATAGTGGAGTGGAGTGAGACTTCAAATCCCAT
** * * *
25844952 CTTCCTTGTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGATTAT
519 CTTCCTAATGAGGTACAAAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTAAGATTAC
*
25845017 AGTGGAGTGGAGTGAACCACCAGAATCCTATACTCTTAAGTTACAATGGGTCGACTGAAAATAAT
584 AGTGGAGTGGAGTGAACCACCAGAATCCTATACTCTTAAGTTACAATGGGTCGAATGAAAATAAT
* * * *** * * *
25845082 GAAGTAGAGCTCCAGGTTTTTA-AGGTCAAAGTGGAGTGAAGTGAGACCTCAAGTC-CTATTTTA
649 AAAGTAGAGCTCAACG-TCCCAGAGGTCAAAGTGGAGTGAAGTAAGACCTCAAATCTC-ATATTA
* * * *
25845145 TTGGTGAGGTACAGAGAAGTGAGTTAGAATC-GATAATAGATCTCAAC-GTCCATGAGGTTATAG
712 CTGGTGAGGTACAGAGAAGTGAGTTA-AAACAGA-AACAGATCTCAACTGTCC-TAAGGTTATAG
* *
25845208 TGGAGTGGAGTGAAGCACCAGAATCCTATACC-CTTGAGTTACAGTGGGTTGGATGAAAATAATG
774 TGGAGTGGAGTAAAGCACCAGAATCCTATACCTC-TGAGTTACAGTGGGTCGGATG-AAATAATG
*
25845272 GAGTAGAG
837 AAGTAGAG
* * * * * * *
25845280 TTTAACGTCCATGAGGTTACAGTGAAATGGATTGAAGCACCAAAATCTTATACCCCTGAGTTACA
1 CTCAACGTCC-TAAGGTTACAGTGAAGTGGAGTGAAGCACCAAAATCCTATACCCCTAAGTTACA
* * * * * *
25845345 ATAGGTCAGATGAAAGTAATGAAGCATAGCTCAACGTCTTTGAGGTTACAGTGGAGTGGAATGAA
65 ATAGGTCAGATAAAAATAATGAAGCAGAGCTCAACGTCCTTAAGATTACAGTGGAGTGGAAT-AA
* * * * *
25845410 -ACTTAAAATC-CTATC-TTCCTGATAAGGTATAGAGAAGTGGGTTAAAATAGGTAGT-GAATCT
129 GACTTAAAATCTC-ATCTTTCCAG-TAAGGTACAGAGAAGTGAGATAAAACAGGTAGTAG-ATCT
* * **
25845471 CAATG-TCCCTGAGGTTATAGTGGAGTGGAGTGAAGC-ATCAGAATCCTATACCCCTGAGTTGTA
191 CAA-GATCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAAT-AAAATCCTATACCCCTGAGTTACA
* ** * * * *
25845534 GTAGG-TCGGATG-AAGTAATGAATTAGAGCTCAATGTCCCTAAGGTTACAGTAGAGTGGGGTGA
254 GT-GGCTCGGATGAAAATAATGAAGGAGAGCTCAACGTCCCTAAGATTACAGTAGAGTAGAGTGA
* * *
25845597 GACTTCAAATCCCATATCTT-TGGTTAGGTACAAAGAAGT-GGTCAAAGCAAAGCAGATCTCAAC
318 GACTTCAAATCCC--ATCTTCTAGTGAGGTACAAAGAAGTGGGTCAAAACAAAGCAGATCTCAAC
* * * * *
25845660 GTCCCTGAGATTA-AAGTGGAGTGGAGTTAAGAACTAAAA-TCTTACACCCCTTAGTTGCAGTCA
381 GTCCCTGAGATTACAA-TAGAGTGGAGTGAAGAACCAAAATTC-TACACCCCTGAGTTACAGTCA
* * *
25845723 ATCAG-ATGAAAATAATGAAGCAGGGCTCAACATCCCTAAGCTTATAGTGGAGTGGAGTGAGACT
444 ATC-GTATGAAAATAATAAAGCAGAGCTAAACATCCCTAAGCTTATAGTGGAGTGGAGTGAGACT
* * * * *
25845787 TCAAATCTCATCTTCCTAATGAGGTACAAATAAGTTGGTTATAATAGGTAGCAGATCTTAACGTC
508 TCAAATCCCATCTTCCTAATGAGGTACAAAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTC
* ** * * ** * *
25845852 CCTAAGGTTACAGTGGAGTTTAGTGAAGCACCAGAATCCTATACTCTTGAGTTGTAGTGGGTTGA
573 CCTAAGATTACAGTGGAGTGGAGTGAACCACCAGAATCCTATACTCTTAAGTTACAATGGGTCGA
* * * * * *
25845917 ATGAAAATAATAAAGTAGAGCTTAACGTCCCAGAGGTTACAGTGGAGTGGAGTAAGACTTTAAAT
638 ATGAAAATAATAAAGTAGAGCTCAACGTCCCAGAGGTCAAAGTGGAGTGAAGTAAGACCTCAAAT
* * *
25845982 CTCATATTGCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGAAACAGATCTCAACTTTCCTAAG
703 CTCATATTACTGGTGAGGTACAGAGAAGTGAGTTAAAACA-GAAACAGATCTCAACTGTCCTAAG
* * ** *
25846047 GTTATAGTGGAGTGGAGTAAAGCATCAGAATCTTATACCTCTGAGTTGTAGTGGGTCGGATGAAG
767 GTTATAGTGGAGTGGAGTAAAGCACCAGAATCCTATACCTCTGAGTTACAGTGGGTCGGATGAAA
25846112 TAATGAAGTAGAG
832 TAATGAAGTAGAG
25846125 CTCAACGTCTCTAAGGTTACAGTGAAGTGGAGTGA
1 CTCAACGTC-CTAAGGTTACAGTGAAGTGGAGTGA
25846160 GACTACAAAT
Statistics
Matches: 724, Mismatches: 136, Indels: 43
0.80 0.15 0.05
Matches are distributed among these distances:
845 51 0.07
846 370 0.51
847 90 0.12
848 203 0.28
849 10 0.01
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.27
Consensus pattern (844 bp):
CTCAACGTCCTAAGGTTACAGTGAAGTGGAGTGAAGCACCAAAATCCTATACCCCTAAGTTACAA
TAGGTCAGATAAAAATAATGAAGCAGAGCTCAACGTCCTTAAGATTACAGTGGAGTGGAATAAGA
CTTAAAATCTCATCTTTCCAGTAAGGTACAGAGAAGTGAGATAAAACAGGTAGTAGATCTCAAGA
TCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAATAAAATCCTATACCCCTGAGTTACAGTGGCTC
GGATGAAAATAATGAAGGAGAGCTCAACGTCCCTAAGATTACAGTAGAGTAGAGTGAGACTTCAA
ATCCCATCTTCTAGTGAGGTACAAAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGA
TTACAATAGAGTGGAGTGAAGAACCAAAATTCTACACCCCTGAGTTACAGTCAATCGTATGAAAA
TAATAAAGCAGAGCTAAACATCCCTAAGCTTATAGTGGAGTGGAGTGAGACTTCAAATCCCATCT
TCCTAATGAGGTACAAAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTAAGATTACAG
TGGAGTGGAGTGAACCACCAGAATCCTATACTCTTAAGTTACAATGGGTCGAATGAAAATAATAA
AGTAGAGCTCAACGTCCCAGAGGTCAAAGTGGAGTGAAGTAAGACCTCAAATCTCATATTACTGG
TGAGGTACAGAGAAGTGAGTTAAAACAGAAACAGATCTCAACTGTCCTAAGGTTATAGTGGAGTG
GAGTAAAGCACCAGAATCCTATACCTCTGAGTTACAGTGGGTCGGATGAAATAATGAAGTAGAG
Found at i:25846191 original size:563 final size:561
Alignment explanation
Indices: 25845283--25850191 Score: 4391
Period size: 563 Copynumber: 8.7 Consensus size: 561
25845273 AGTAGAGTTT
* * * * * * * * ** * *
25845283 AACGTCCATGAGGTTACAGTGAAATGGATTGAAGCACCAAAATCTTATACCCCTGAGTTACAATA
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * ** * *
25845348 GGTC-AGATGAAAGTAATGAAGCATAGCTCAACGTCTTTGAGGTTACAGTGGAGTGGAATGAAAC
66 GGTCGA-ATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGAC
* * * * ** **
25845412 TTAAAATCCTATCTTCCT-GATAAGGTATAGAGAAGTGGGTTAAAATAGGTAGTGAATCTCAA-T
130 TTCAAATCC-ATCTTCCTAG-TGAGGTACAGAGAAGTGGGTTAAAACA-AAACAG-ATCTCAACT
* * * *
25845475 GTCCCTGAGGTTATAGTGGAGTGGAGTGAAGCATCAGAATCCTATACCCCTGAGTTGTAGTAGGT
191 -TTCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGT
* ** * *
25845540 CGGATG-AAGTAATGAATTAGAGCTCAATGTCCCTAAGGTTACAGT-AGAGTGGGGTGAGACTTC
255 CGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGA-AGTGGAGTGAGACTTC
* * * * * *
25845603 AAATCCCATATCTTTGGTTAGGTACAAAGAAGTGGTCAAAGCAAAGCAGATCTCAACGTCCCTGA
319 AAATCCAATCTCCTTGGTGAGGTACAGAGAAGTGGTCAAAACAAAGCAGATCTCAACGTCCCTGA
* * * * * * * * *** *
25845668 GATTAAAGTGGAGTGGAGTTAAGAACTAAAATCTTACACCCCTTAGTTGCAGTCAATCAGATGAA
384 GGTTAAAGTGGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTGGGTCGGATGAA
* * * * * *
25845733 AATAATGAAGCAGGGCTCAACATCCCTAAGCTTATAGTGGAGTGGAGTGAGACTTCAAATCTCAT
449 AATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCAT
** * * * * * ** *
25845798 CTTCCTAATGAGGTACAAATAAGTTGGTTATAATAGGTAGCAGATCTT
514 CTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGAAAGCAGATCTC
** *
25845846 AACGTCCCTAAGGTTACAGTGGAGTTTAGTGAAGCACCAGAATCCTATACTCTTGAGTTGTAGTG
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * * * *
25845911 GGTTGAATGAAAATAATAAAGTAGAGCTTAACGTCCCAGAGGTTACAGTGGAGTGGAGTAAGACT
66 GGTCGAATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACT
* * * *
25845976 TTAAATCTCATATTGCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGAAACAGATCTCAACTTT
131 TCAAATC-CATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACA--AAACAGATCTCAACTTT
* * * * * *
25846041 CCTAAGGTTATAGTGGAGTGGAGTAAAGCATCAGAATCTTATACCTCTGAGTTGTAGTGGGTCGG
193 CCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGG
* * * *
25846106 ATG-AAGTAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGAAGTGGAGTGAGACTACAAAT
258 ATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGAAGTGGAGTGAGACTTCAAAT
* *
25846170 CTC-ATCTCCTTGGTGAGGTACAGAGAAGTGGTCAAAGCAAAGCAGATCTCAACGTCCCTAAGGT
323 C-CAATCTCCTTGGTGAGGTACAGAGAAGTGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGT
* * * * * * *
25846234 TAAAGTGCAGTGGAGTGAAGCACCAGAATCCTATACCCTTTAGTTGCAGTTGGTCGGATGATAAT
387 TAAAGTGGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTGGGTCGGATGAAAAT
* * * *
25846299 AATGACGCTGGGCTCAACGTCCCTGAGGTTACAATAGG-GTGGAGTGAGACTTCAAATCCCATCT
452 AATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGT-GGAGTGGAGTGAGACTTCAAATCCCATCT
** * * * *
25846363 TCCTAATGAGGTACAAATAAGTGGGTTAAAACA-AGTAGCAGATCTT
516 TCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGA-AAGCAGATCTC
* * * *
25846409 AACGTCCCTAAGGTTAAATTGGAGTGGAGTGAAGCACCAGAATTCTATACTCTTGAGTTGTAGTG
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * * *
25846474 GGTCGAATAAAAATAATGAAGTAGAGCTTAACGTCCCCGAGGTTACAGTGGAGT-AATGTGAGAC
66 GGTCGAATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGA-GTGAGAC
* * * * * * *
25846538 TTTAAATCCCATCTTACTTGTGAGGTACACAGAAGTGGGTTAAAACAGGTAAGAGATCTCAACGT
130 TTCAAAT-CCATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACA--AAACAGATCTCAACTT
* * * * * *
25846603 T-CTTACGGTTATAGTGGAGTGGAGTGAAGCATCAGAATCTTATACCCCTAAGTTGCAGTGGGTC
192 TCCTGA-GGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTC
* * * * * * **
25846667 GGATGAAAATAATGAAGGAGAGCTTAATGTCCCTGAGGTTACAAT-AGAGTGGAGTTAGACTAGA
256 GGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGA-AGTGGAGTGAGACTTCA
* * ** * * * * *
25846731 AATCTAATTTTTTTGGTGAGGTACCA-AGAAGCGAGTCAAAATAAAGCGGGTCTTAACGT-CCTA
320 AATCCAATCTCCTTGGTGAGGTA-CAGAGAAGTG-GTCAAAACAAAGCAGATCTCAACGTCCCT-
* * * * * *
25846794 GAGGTTACAA-CGGAGTGGAATTAAGCACCAGAATCCTATACCCTTGAGTTGTTGTGGGTCGGAT
382 GAGGTTA-AAGTGGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTGGGTCGGAT
* * * ** * * *
25846858 GAAAATAATGAAGGAGAGCTCAACGTCTCTAAGGTTACAAAGGAATGAAGTGAGACTTCAAATCA
446 GAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC
** * *
25846923 CATCTTTTTGGTGACGTACAGAGAAGTGGGTCAAAACA-AAATG--GATCTC
511 CATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGAAA-GCAGATCTC
* * * * ** * * ** *
25846972 AACATCCTTGAGGTTACAATATAGTGGAGTGAAGCACCATAATTCTATACCCCCGAGTTGCAGTG
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * * **
25847037 GGT-TAGTTGAAAATAATGAAGCA-ATGCTCAACCTCTCTGAGGTTACAGTAAAGTGGAGTGAGA
66 GGTCGA-ATGAAAATAATGAAGCAGA-GCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGA
* * * * * *
25847100 CTTCACATCCTATCTTCCTAGTCAGGTATAGAGAAGTAGGTTAAAACAAAGA-GGATCTCAACGT
129 CTTCAAATCC-ATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAA-ACAGATCTCAACTT
* * * * **
25847164 TCTTGAGGTTACAATGGAGTGGAGTGAAGCACGAGAATCCTATACCCCT-ATGGTT-TAATATGT
192 TCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGA--GTTGTAGTGGGT
* * * * * * *
25847227 TGGATAAAAATAATGAAGCAGAGCACAACGTCCCTGAGGTTATAGAGGAGTGGAGTGAGACTTCA
255 CGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGAAGTGGAGTGAGACTTCA
* * * * *
25847292 AATCCAATCTTCC-TGGTGAGGTACAGAGGAGTGGGTTAAAACCGATAGTAGATCTTAGA-GTCC
320 AATCCAATC-TCCTTGGTGAGGTACAGAGAAGT-GGTCAAAA-C-AAAGCAGATCTCA-ACGTCC
* * * * * *
25847355 TTGAGGTTACAGTGGAGTGAAGTAAAGCACCAGAATCCTATA-CCCTGAGTTGTAATGGGTCGGA
380 CTGAGGTTAAAGTGGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTGGGTCGGA
* * *
25847419 TGAAAATAATAAAGTAGAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATC
445 TGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATC
* * * * ** *
25847484 CCATCTTCCTGGTAAGATACAGAGAAGTGAGTAAAAACAGATTG--GATATC
510 CCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGAAAGCAGATCTC
* * * * * * * *
25847534 AATGTCTCTGAGGTTATAGTGGAGTGGAGTGAAGAACTAGAATCCTATACCCCTGAGTTGCAGTG
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* ** * **
25847599 GGTCGAATGAAAATAAAT-AAGTAGAGCTCAACGTCTTTGAGGTTACATTGGAGTTAAGTGAGAC
66 GGTCGAATGAAAAT-AATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGAC
* * * * * * * * *
25847663 TTCAAATCCCTTATTCCTAGTAAGATGCAGAGAAGTGAGTCAAAACAAAGCAGATCTCAAC-ATC
130 TTCAAAT-CCATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAAACAGATCTCAACTTTC
* * * * * ** * * * * * * **
25847727 AGTAAGGTTATAGTAGATTACAGAGAAGAACCAAAATCCTATACCGCTGAGTTGTAATGAGTATG
194 -CTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGG
* * * *
25847792 ATAAAAATAATGAAGCAGAGCTCAACGTCCCCAAGGTTACAGTGGAGTGGAGTGAAACTTCAAAT
258 ATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGAAGTGGAGTGAGACTTCAAAT
* * * * * * * * **
25847857 CCCATTTTCTTGGTGAGGTATAGAGAAGTGGTTAAAATAGGTAGCAGATGTCAACGT-CCTTTGG
323 CCAATCTCCTTGGTGAGGTACAGAGAAGTGGTCAAAACA--AAGCAGATCTCAACGTCCCTGAGG
* * * * * *** * * *
25847921 TTACAGTGGAGTAGAGTGAAGAACTAGATTCTTATACTTTTAAGTTGCAGTGGGTCGTATGAAAA
386 TTAAAGTGGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTGGGTCGGATGAAAA
* * *
25847986 TAATGAAGCAGAGCTCAACGTCCCTGAGGTTATAGTGGAGTGGTGTGAGACTTCAAATGCCATCT
451 TAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCT
* * *
25848051 TCTTGGTGAGGTACAGAGAAGTGGGTCAAAAC--AAAGCAAATCTC
516 TCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGAAAGCAGATCTC
* * * * * * * * ** * * *
25848095 AACATCCTTGAGATTATAATAGACTGGAGTGAAGCATTAAAATTCTATACCCCTGAGTTGCT-GT
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTG-TAGT
* * * * ** *
25848159 GGGT-TAGATGAAAATAATGAAACAGTGCTCAATGTCCCTGAGGTTACAGTAAAGTAGAGTGAGA
65 GGGTCGA-ATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGA
* * * ** * * * *
25848223 CTTCAAATCATATCTTCCAAGTCAGGTGTAGAGAAGTGGGTCAAAATAAAGCAGATCTTAACGTC
129 CTTCAAATC-CATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAAACAGATCTCAAC-T-
* *
25848288 TT--TGAGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGGTTCT-GTGGGT
191 TTCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGA-GTTGTAGTGGGT
* *
25848350 CGGATGAAAATAATGAAGCAGAGCACAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCA
255 CGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGAAGTGGAGTGAGACTTCA
* * * * * * *
25848415 AATCCAATCT-TTCTGGTGAGGTACAGAGGAGTGGGTTAAAATAGGTAGCAGATCTCAAAGTCCT
320 AATCCAATCTCCT-TGGTGAGGTACAGAGAAGT-GGTCAAAACA--AAGCAGATCTCAACGTCCC
* * *
25848479 TGAGGTTATAGTGGAGTGTAGTGAAGCACCAGAATCTTATACCCCTGAGTTATAGTGGGTCGGAT
381 TGAGGTTAAAGTGGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTGGGTCGGAT
* * *
25848544 GAAAATAATAAAGTAGAGCTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC
446 GAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC
* * * * *
25848609 CATCTTCCTGGTGAGATATAGAGAAGTGAGTTAAAAC--AAAGCGGATCTT
511 CATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGAAAGCAGATCTC
* *** * *
25848658 AACGTCCCTAAGGTTAGAGTGGAGTGGAGTGAAGCATTGGAATCCTATACTCTTGAGTTATAGTG
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * * * * * * * *
25848723 GG-CTGGATGAAAATAATGAAGCAGAGCTTAACGTTCCTAAAGTTTCAGCGGAATAGAGTAAGAC
66 GGTC-GAATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGAC
* * * * * **
25848787 TTCAAATCCCATCTTACTAGTGAGGTACAGAGAAATGGGTTAAAACAGGTAGCAGATCTCTAGAT
130 TTCAAAT-CCATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACA--AAACAGATCTCAACTT
* * * * **
25848852 CCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAAATCCTATACCCCTGAGTTGTAGTTGGTTA
192 TCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCG
* * * * * *
25848917 GATGAAAATAATGAAGGAGAGCTCAACGTCCTTGAGATTATAGTGGAGTGGAGTGAGACTTCAAA
257 GATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGAAGTGGAGTGAGACTTCAAA
* ** * * * * * * ** *
25848982 TCCTATCTTATTTGTGAGGTACAGAGAAGTGGGTCAAAATAATGC-GTATTTGAAAGTCTTTAAG
322 TCCAATCTCCTTGGTGAGGTACAGAGAAGT-GGTCAAAACAAAGCAG-ATCTCAACGTCCCTGAG
* * * * * *
25849046 GTTATAA-TGGAGTGGAGTAAAGCACTAAAATCTTATACCCCTGAGTTATAGTCGGTCAGATGAA
385 GTTA-AAGTGGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTGGGTCGGATGAA
* * *
25849110 AATAATCAAGCAGAGCTCAACGTCCCTGAGGTTATAGTAGAGTGGAGTGAGACTTCAAATCCCAT
449 AATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCAT
** * * ** *
25849175 CTTCCTAATGAGGTACATATAAGTGGGTTAAAACAGGTAGTAGATCTC
514 CTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGAAAGCAGATCTC
* * * *
25849223 AACGTCCCTAAGGTTATAGTGGAGTGGAATGAAGCACCAGAATCCTATACTCATGAGTTGTAGTG
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * * * *
25849288 GGTCGAATGAAAATAATGAAGTAGAGCTTAACGTCTCTTAGGTTACAGTAGAGTGGAGTGAGAGT
66 GGTCGAATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACT
* * * * * * * *
25849353 TCAAATCCTATCTTTCTTGTGAGGTATAGATAAGTGGGTCAAAA-TAAAGAGAATCTCAA-TGTC
131 TCAAATCC-ATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAAACAG-ATCTCAACT-TT
* * * **
25849416 CCTAAGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGT-GGTCGG
193 CCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGG
* * * * * *
25849480 ACGAAAATAATGAAGCAAAGCTCAACGTCCTTTATGTTACAGTTG-AGTGGAGTGAGATTTCAAA
258 ATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAG-TGAAGTGGAGTGAGACTTCAAA
* * *
25849544 TCCAATCTTCC-TAGTGAGGTAC-GAAGAAGTGAGTCAAAACAAAGCAGATCTCAACGTCACTAA
322 TCCAATC-TCCTTGGTGAGGTACAG-AGAAGTG-GTCAAAACAAAGCAGATCTCAACGTCCCTGA
* * * * * *
25849607 GGTTATAGTGGATTAGAGTGAAGCACCAAAATCTTATACCGCTGAGTTGTAGTGGGTCGGATAAA
384 GGTTAAAGTGGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTGGGTCGGATGAA
* * *
25849672 AATAATGAAGCAGAGCTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAAACTTCAAATCCCAT
449 AATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCAT
* * *
25849737 CTTCCTGGTGAGGTACATAGAAGTGGGTTAAAATAGGAAGCAGATCTC
514 CTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGAAAGCAGATCTC
* * **
25849785 AACGTCCCTGAGGTTACAGTGGAGTAGAGTGAAGCAATAGAATCCTATACCCTT-ATGTTGTAGT
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGA-GTTGTAGT
** * * *
25849849 GGGTCGAATGAAAATAATCCAGCAGAGCTCAACATCCCTAAGGTTATAGTGGAGTGGAGTGAGAC
65 GGGTCGAATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGAC
* * * * *** * *
25849914 TTCAAATCTCATCTTCTTGGTGAGGTGCAGAGAAGTGGGTCAAAACAAAGTGGATCTCAACGTCC
130 TTCAAATC-CATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAAACAGATCTCAACTTTC
* * * * * * **
25849979 CCGAGGTTACAATAGAGTGGAGTGAAGCACCAAAATTCTATACCCCTGAGTTGTAGTAGGTTAGA
194 CTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGGA
* ** * * *
25850044 TGAAAATAATGAAGCAGAGTTCAACGTCTTTGAGGTTACAGT-AGATTGCAGTGAGACTTCAAAT
259 TGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGA-AGTGGAGTGAGACTTCAAAT
* ** * *
25850108 CCTATCTTCC--GAGTGAGGTACAGAGAAGTGGGTCAAAACAAAGTGGATCCCAATGTCCCTGAG
323 CCAATC-TCCTTG-GTGAGGTACAGAGAAGT-GGTCAAAACAAAGCAGATCTCAACGTCCCTGAG
* *
25850171 GTTACAGTAGAGTGGAGTGAA
385 GTTAAAGTGGAGTGGAGTGAA
25850192 ACTTTAAATC
Statistics
Matches: 3571, Mismatches: 676, Indels: 198
0.80 0.15 0.04
Matches are distributed among these distances:
559 3 0.00
560 43 0.01
561 545 0.15
562 889 0.25
563 1523 0.43
564 104 0.03
565 460 0.13
566 4 0.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (561 bp):
AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
GGTCGAATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACT
TCAAATCCATCTTCCTAGTGAGGTACAGAGAAGTGGGTTAAAACAAAACAGATCTCAACTTTCCT
GAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGGATG
AAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGAAGTGGAGTGAGACTTCAAATCCA
ATCTCCTTGGTGAGGTACAGAGAAGTGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTAAA
GTGGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATG
AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTG
GTGAGGTACAGAGAAGTGGGTTAAAACAGAAAGCAGATCTC
Found at i:25846933 original size:187 final size:187
Alignment explanation
Indices: 25845283--25850191 Score: 4243
Period size: 187 Copynumber: 26.2 Consensus size: 187
25845273 AGTAGAGTTT
* * * * * * ** *
25845283 AACGTCC-ATGAGGTTACAGTGAAATGGATTGAAGCACCAAAATCTTATACCCCTGAGTTACAAT
1 AACGTCCTA-GAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * * * ** * * *
25845347 AGGTCAGATGAAAGTAATGAAGCATAGCTCAACGTCTTTGAGGTTACAGTGGAGTGGAATGAAAC
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGAC
* * * * * * * *
25845412 TTAAAATCCTATCTTCCTGATAAGGTATAGAGAAGTGGGTTAAAATAGGTAG-TGAATCTC
130 TTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--AAGCAG-ATCTC
* * * *
25845472 AATGTCCCT-GAGGTTATAGTGGAGTGGAGTGAAGCATCAGAATCCTATACCCCTGAGTTGTAGT
1 AACGT-CCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * ** * * *
25845536 AGGTCGGATG-AAGTAATGAATTAGAGCTCAATGTCCCTAAGGTTACAGTA-GAGTGGGGTGAGA
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAG-AGGAGTGGAGTGAGA
* * * *
25845599 CTTCAAATCCCATATCTT--TGGTTAGGTACAAAGAAGT-GGTCAAAGCAAAGCAGATCTC
129 CTTCAAATCCC--ATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
* * * * * * * * *
25845657 AACGTCCCT-GAGATTAAAGTGGAGTGGAGTTAAGAACTAAAATCTTACACCCCTT-AGTTGCAG
1 AACGT-CCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTGTAG
*** * * * * * * *
25845720 TCAATCAGATGAAAATAATGAAGCAGGGCTCAACATCCCTAAGCTTATAGTGGAGTGGAGTGAGA
64 TGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGA
* ** * * * *** *
25845785 CTTCAAATCTCATCTTCCTAATGAGGTACAAATAAGTTGGTTATAATAGGTAGCAGATCTT
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTA-AA-ACAAAGCAGATCTC
** *
25845846 AACGTCCCTA-AGGTTACAGTGGAGTTTAGTGAAGCACCAGAATCCTATACTCTTGAGTTGTAGT
1 AACGT-CCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * * * * * * *
25845910 GGGTTGAATGAAAATAATAAAGTAGAGCTTAACGTCCCAGAGGTTACAGTGGAGTGGAGTAAGAC
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGAC
* * * * *
25845975 TTTAAATCTCATATTGCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGAAACAGATCTC
130 TTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--AAGCAGATCTC
* * * * *
25846035 AACTTTCCTA-AGGTTATAGTGGAGTGGAGTAAAGCATCAGAATCTTATA-CCTCTGAGTTGTAG
1 AAC-GTCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCT-TGAGTTGTAG
* * * * * *
25846098 TGGGTCGGATG-AAGTAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGAAGTGGAGTGAGA
64 TGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGA
* * * *
25846162 CTACAAATCTCATC-TCCTTGGTGAGGTACAGAGAAGT-GGTCAAAGCAAAGCAGATCTC
129 CTTCAAATCCCATCTTCC-TGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
* * * *
25846220 AACGTCCCTA-AGGTTAAAGTGCAGTGGAGTGAAGCACCAGAATCCTATACCCTTTAGTTGCAGT
1 AACGT-CCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * * * * *
25846284 TGGTCGGATGATAATAATGACGCTGGGCTCAACGTCCCTGAGGTTACAATAGG-GTGGAGTGAGA
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTAC-AGAGGAGTGGAGTGAGA
** * * *
25846348 CTTCAAATCCCATCTTCCTAATGAGGTACAAATAAGTGGGTTAAAACAAGTAGCAGATCTT
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAA--AGCAGATCTC
* * * *
25846409 AACGTCCCTA-AGGTTAAATTGGAGTGGAGTGAAGCACCAGAATTCTATACTCTTGAGTTGTAGT
1 AACGT-CCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * * * * * *
25846473 GGGTCGAATAAAAATAATGAAGTAGAGCTTAACGTCCCCGAGGTTACAGTGGAGT-AATGTGAGA
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGA-GTGAGA
* * * *
25846537 CTTTAAATCCCATCTTACTTGTGAGGTACACAGAAGTGGGTTAAAACAGGTAAG-AGATCTC
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA---AAGCAGATCTC
* * * * * * * *
25846598 AACGTTCTTA-CGGTTATAGTGGAGTGGAGTGAAGCATCAGAATCTTATACCCCTAAGTTGCAGT
1 AACG-TCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * * * *
25846662 GGGTCGGATGAAAATAATGAAGGAGAGCTTAATGTCCCTGAGGTTACA-ATAGAGTGGAGTTAGA
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGA-GGAGTGGAGTGAGA
** ** * ** * * * * * * *
25846726 CTAGAAATCTAATTTTTTTGGTGAGGTACCA-AGAAGCGAGTCAAAATAAAGCGGGTCTT
129 CTTCAAATCCCATCTTCCTGGTGAGGTA-CAGAGAAGTGGGTTAAAACAAAGCAGATCTC
** * * *
25846785 AACGTCCTAGAGGTTACAACGGAGTGGAATTAAGCACCAGAATCCTATACCCTTGAGTTGTTGTG
1 AACGTCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * * * *
25846850 GGTCGGATGAAAATAATGAAGGAGAGCTCAACGTCTCTAAGGTTACAAAGGAATGAAGTGAGACT
66 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGACT
* ** * * ***
25846915 TCAAATCACATCTTTTTGGTGACGTACAGAGAAGTGGGTCAAAACAAAATGGATCTC
131 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
* * * ** * * ** *
25846972 AACATCCTTGAGGTTACAATATAGTGGAGTGAAGCACCATAATTCTATACCCCCGAGTTGCAGTG
1 AACGTCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
** * * * *
25847037 GGTTAGTTGAAAATAATGAAGCA-ATGCTCAACCTCTCTGAGGTTACAGTA-AAGTGGAGTGAGA
66 GGTCGGATGAAAATAATGAAGCAGA-GCTCAACGTCCCTGAGGTTACAG-AGGAGTGGAGTGAGA
* * * * * *
25847100 CTTCACATCCTATCTTCCTAGTCAGGTATAGAGAAGTAGGTTAAAACAAAG-AGGATCTC
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCA-GATCTC
* * * * *
25847159 AACGTTCTTGAGGTTACAATGGAGTGGAGTGAAGCACGAGAATCCTATACCCCTATG-GTT-TAA
1 AACGTCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA-CCCT-TGAGTTGTAG
** * * * *
25847222 TATGTTGGATAAAAATAATGAAGCAGAGCACAACGTCCCTGAGGTTATAGAGGAGTGGAGTGAGA
64 TGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGA
* * * * *
25847287 CTTCAAATCCAATCTTCCTGGTGAGGTACAGAGGAGTGGGTTAAAACCGATAGTAGATCTT
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAA-C-AAAGCAGATCTC
* * * *
25847348 AGA-GTCCTTGAGGTTACAGTGGAGTGAAGTAAAGCACCAGAATCCTATACCC-TGAGTTGTAAT
1 A-ACGTCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * * *
25847411 GGGTCGGATGAAAATAATAAAGTAGAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGAC
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGAC
* * * * * *** *
25847476 TTCAAATCCCATCTTCCTGGTAAGATACAGAGAAGTGAGTAAAAACAGATTGGATATC
130 TTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
* * * * * *
25847534 AATGTCTCT-GAGGTTATAGTGGAGTGGAGTGAAGAACTAGAATCCTATACCCCTGAGTTGCAGT
1 AACGTC-CTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * ** ** **
25847598 GGGTCGAATGAAAATAAAT-AAGTAGAGCTCAACGTCTTTGAGGTTACATTGGAGTTAAGTGAGA
65 GGGTCGGATGAAAAT-AATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGA
* * * * * * * *
25847662 CTTCAAATCCCTTATTCCTAGTAAGATGCAGAGAAGTGAGTCAAAACAAAGCAGATCTC
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
* * * * * ** * * * *
25847721 AACATCAGTA-AGGTTATAGTAGATTACAGAGAAGAACCAAAATCCTATACCGC-TGAGTTGTAA
1 AACGTC-CTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACC-CTTGAGTTGTAG
* ** * ** * *
25847784 TGAGTATGATAAAAATAATGAAGCAGAGCTCAACGTCCCCAAGGTTACAGTGGAGTGGAGTGAAA
64 TGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGA
* * * * * *
25847849 CTTCAAATCCCATTTTCTTGGTGAGGTATAGAGAAGT-GGTTAAAATAGGTAGCAGATGTC
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--AAGCAGATCTC
** * * * * * ** * *
25847909 AACGTCCT-TTGGTTACAGTGGAGTAGAGTGAAGAACTAGATTCTTATACTTTTAAGTTGCAGTG
1 AACGTCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * *
25847973 GGTCGTATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTATAGTGGAGTGGTGTGAGACT
66 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGACT
* * * *
25848038 TCAAATGCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCAAATCTC
131 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
* * * * * * * ** * * *
25848095 AACATCCTTGAGATTATAATAGACTGGAGTGAAGCATTAAAATTCTATACCCCTGAGTTGCT-GT
1 AACGTCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTG-TAGT
** * * * * *
25848159 GGGTTAGATGAAAATAATGAAACAGTGCTCAATGTCCCTGAGGTTACAGTA-AAGTAGAGTGAGA
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAG-AGGAGTGGAGTGAGA
** ** * ** * * *
25848223 CTTCAAATCATATCTTCCAAGTCAGGTGTAGAGAAGTGGGTCAAAATAAAGCAGATCTT
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
* * * * *
25848282 AACGTCTTTGAGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGGTTCT-GT
1 AACGTCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGA-GTTGTAGT
* * *
25848346 GGGTCGGATGAAAATAATGAAGCAGAGCACAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGAC
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGAC
* * * * *
25848411 TTCAAATCCAATCTTTCTGGTGAGGTACAGAGGAGTGGGTTAAAATAGGTAGCAGATCTC
130 TTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--AAGCAGATCTC
* * * * * * *
25848471 AAAGTCCTTGAGGTTATAGTGGAGTGTAGTGAAGCACCAGAATCTTATACCCCTGAGTTATAGTG
1 AACGTCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * *
25848536 GGTCGGATGAAAATAATAAAGTAGAGCTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACT
66 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGACT
* * * * *
25848601 TCAAATCCCATCTTCCTGGTGAGATATAGAGAAGTGAGTTAAAACAAAGCGGATCTT
131 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
* *** * *
25848658 AACGTCCCTA-AGGTTAGAGTGGAGTGGAGTGAAGCATTGGAATCCTATACTCTTGAGTTATAGT
1 AACGT-CCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * * * * * * * *
25848722 GGG-CTGGATGAAAATAATGAAGCAGAGCTTAACGTTCCTAAAGTTTCAGCGGAATAGAGTAAGA
65 GGGTC-GGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGA
* * * *
25848786 CTTCAAATCCCATCTTACTAGTGAGGTACAGAGAAATGGGTTAAAACAGGTAGCAGATCTC
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--AAGCAGATCTC
* * * *
25848847 TA-GATCCCT-GAGGTTACAGTGGAGTGGAGTGAAGCACTAAAATCCTATACCCCTGAGTTGTAG
1 AACG-T-CCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAG
* ** * * * * *
25848910 TTGGTTAGATGAAAATAATGAAGGAGAGCTCAACGTCCTTGAGATTATAGTGGAGTGGAGTGAGA
64 TGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGA
* ** * * * * * *
25848975 CTTCAAATCCTATCTTATTTGTGAGGTACAGAGAAGTGGGTCAAAATAATGC-GTATTTG
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAG-ATCTC
* * * * * * * * * *
25849034 AAAGTCTTTA-AGGTTATAATGGAGTGGAGTAAAGCACTAAAATCTTATACCCCTGAGTTATAGT
1 AACGTC-CTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * * *
25849098 CGGTCAGATGAAAATAATCAAGCAGAGCTCAACGTCCCTGAGGTTATAGTA-GAGTGGAGTGAGA
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAG-AGGAGTGGAGTGAGA
** * * * *
25849162 CTTCAAATCCCATCTTCCTAATGAGGTACATATAAGTGGGTTAAAACAGGTAGTAGATCTC
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--AAGCAGATCTC
* * * *
25849223 AACGTCCCTA-AGGTTATAGTGGAGTGGAATGAAGCACCAGAATCCTATACTCATGAGTTGTAGT
1 AACGT-CCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * * * *
25849287 GGGTCGAATGAAAATAATGAAGTAGAGCTTAACGTCTCTTAGGTTACAGTA-GAGTGGAGTGAGA
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAG-AGGAGTGGAGTGAGA
* * * * * * * *
25849351 GTTCAAATCCTATCTTTCTTGTGAGGTATAGATAAGTGGGTCAAAATAAAG-AGAATCTC
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAG-ATCTC
* * **
25849410 AATGTCCCTA-AGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGT
1 AACGT-CCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * * * * ** *
25849474 -GGTCGGACGAAAATAATGAAGCAAAGCTCAACGTCCTTTATGTTACAGTTGAGTGGAGTGAGAT
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGAC
* * * *
25849538 TTCAAATCCAATCTTCCTAGTGAGGTAC-GAAGAAGTGAGTCAAAACAAAGCAGATCTC
130 TTCAAATCCCATCTTCCTGGTGAGGTACAG-AGAAGTGGGTTAAAACAAAGCAGATCTC
* * * * *
25849596 AACGTCACTA-AGGTTATAGTGGATTAGAGTGAAGCACCAAAATCTTATACCGC-TGAGTTGTAG
1 AACGTC-CTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACC-CTTGAGTTGTAG
* * *
25849659 TGGGTCGGATAAAAATAATGAAGCAGAGCTCAACGTCCTTGAGGTTACAGTA-GAGTGGAGTGAA
64 TGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAG-AGGAGTGGAGTGAG
* *
25849723 ACTTCAAATCCCATCTTCCTGGTGAGGTACATAGAAGTGGGTTAAAATAGGAAGCAGATCTC
128 ACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACA--AAGCAGATCTC
* **
25849785 AACGTCCCT-GAGGTTACAGTGGAGTAGAGTGAAGCAATAGAATCCTATACCCTT-ATGTTGTAG
1 AACGT-CCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGA-GTTGTAG
* ** * * * *
25849848 TGGGTCGAATGAAAATAATCCAGCAGAGCTCAACATCCCTAAGGTTATAGTGGAGTGGAGTGAGA
64 TGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGA
* * * * **
25849913 CTTCAAATCTCATCTTCTTGGTGAGGTGCAGAGAAGTGGGTCAAAACAAAGTGGATCTC
129 CTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
** * * * * * *
25849972 AACGTCCCCGAGGTTACAATAGAGTGGAGTGAAGCACCAAAATTCTATACCCCTGAGTTGTAGTA
1 AACGTCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
** * ** * *
25850037 GGTTAGATGAAAATAATGAAGCAGAGTTCAACGTCTTTGAGGTTACAGTA-GATTGCAGTGAGAC
66 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAG-AGGAGTGGAGTGAGAC
* * ** *
25850101 TTCAAATCCTATCTTCC-GAGTGAGGTACAGAGAAGTGGGTCAAAACAAAGTGGATCCC
130 TTCAAATCCCATCTTCCTG-GTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
* *
25850159 AATGTCCCT-GAGGTTACAGTAGAGTGGAGTGAA
1 AACGT-CCTAGAGGTTACAGTGGAGTGGAGTGAA
25850192 ACTTTAAATC
Statistics
Matches: 3831, Mismatches: 777, Indels: 226
0.79 0.16 0.05
Matches are distributed among these distances:
184 6 0.00
185 132 0.03
186 386 0.10
187 1752 0.46
188 308 0.08
189 1227 0.32
190 19 0.00
192 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (187 bp):
AACGTCCTAGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGAGGAGTGGAGTGAGACT
TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAAAGCAGATCTC
Found at i:25848390 original size:94 final size:94
Alignment explanation
Indices: 25848271--25851880 Score: 437
Period size: 94 Copynumber: 38.5 Consensus size: 94
25848261 GGTCAAAATA
* * ** *
25848271 AAGCAGATCTTAACGTCTTTGAGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
25848336 GAGGTTCTGTGGGTCGGATGAAAATAATG
66 GAGGTTCTGTGGGTCGGATGAAAATAATG
* * *
25848365 AAGCAGAGCACAACGTCCCTAAGGTTACAGTGGAGTGGAGTG-AG-ACTTCA-AATCCAAT-CTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAATCCTATAC--
** * * * * * *
25848426 TCTGGTGAGGTACAGAGGAGT-GGGTTAAAAT-AGG
62 -C-CCTGAGGTTCTGTGG-GTCGGATGAAAATAATG
* * * * * * *
25848460 TAGCAGATCTCAAAGTCCTTGAGGTTATAGTGGAGTGTAGTGAAGCACCAGAATCTTATACCCCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* *
25848525 GA-GTTATAGTGGGTCGGATGAAAATAATA
66 GAGGTTCT-GTGGGTCGGATGAAAATAATG
* * * *
25848554 AAGTAGAGCTCAACATCCCTGAGGTTACAGTGGAGTGGAGTG-AG-ACTTCA-AATCCCAT-CTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAATCCTATAC-C
* * * * * * *
25848615 CCTGGTGAGATATAGAGAAGT--GAGTTAAAA-CA--
63 CCT-GAG-GTTCT-GTG-GGTCGGA-TGAAAATAATG
* * * * * *** * *
25848647 AAGCGGATCTTAACGTCCCTAAGGTTAGAGTGGAGTGGAGTGAAGCATTGGAATCCTATACTCTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
*
25848712 GA-GTTATAGTGGG-CTGGATGAAAATAATG
66 GAGGTTCT-GTGGGTC-GGATGAAAATAATG
* * * * * * * * *
25848741 AAGCAGAGCTTAACGTTCCTAAAGTTTCAGCGGAATAGAGT-AAG-ACTTCA-AATCCCATCTTA
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAAT-CC-T-ATA
*** * * * ** * * * *
25848803 CTAGTGAGGTACAGAGAAAT-GGGTTAAAA-CAGG
61 CCCCTGAGGTTCTGTG-GGTCGGATGAAAATAATG
* * * * *
25848836 TAGCAGATCTCTA-GATCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAAATCCTATACCCC
1 AAGCAGAGCTCAACG-TCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCC
* * **
25848900 TGA-GTTGTAGTTGGTTAGATGAAAATAATG
65 TGAGGTTCT-GTGGGTCGGATGAAAATAATG
* * * *
25848930 AAGGAGAGCTCAACGTCCTTGAGATTATAGTGGAGTGGAGTG-AG-ACTTCA-AATCCTATCTTA
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAATCCTA---TA
**** * * * * * *
25848992 TTTGTGAGGTACAGAGAAGT-GGGTCAAAATAAT-
61 CCCCTGAGGTTCTGTG-GGTCGGATGAAAATAATG
** * * ** * * * * * * *
25849025 --GC-GTATTTGAAAGTCTTTAAGGTTATAATGGAGTGGAGTAAAGCACTAAAATCTTATACCCC
1 AAGCAG-AGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCC
* * * *
25849087 TGA-GTTATAGTCGGTCAGATGAAAATAATC
65 TGAGGTTCT-GTGGGTCGGATGAAAATAATG
* * *
25849117 AAGCAGAGCTCAACGTCCCTGAGGTTATAGTAGAGTGGAGTG-AG-ACTTCA-AATCCCAT-CTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAATCCTATAC--
* * * ** * * * *
25849178 CCTAATGAGGTACATATAAGT-GGGTTAAAA-CAGG
62 CC--CTGAGGTTC-TGTGGGTCGGATGAAAATAATG
* * * * * * * *
25849212 TAGTAGATCTCAACGTCCCTAAGGTTATAGTGGAGTGGAATGAAGCACCAGAATCCTATACTCAT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* *
25849277 GA-GTTGTAGTGGGTCGAATGAAAATAATG
66 GAGGTTCT-GTGGGTCGGATGAAAATAATG
* * * * * **
25849306 AAGTAGAGCTTAACGTCTCTTAGGTTACAGTAGAGTGGAGTGAGAG-TTCA-AATCCTAT-CTTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGA-AGCACCAGAATCCTATAC---
** * ** * * *
25849368 CTTGTGAGGTAT-AGATAAGT-GGGTCAAAATAAAG
62 C-CCTGAGGT-TCTG-TGGGTCGGATGAAAATAATG
* * * * *
25849402 -AG-A-ATCTCAATGTCCCTAAGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* *
25849464 GA-GTTACAGT-GGTCGGACGAAAATAATG
66 GAGGTT-CTGTGGGTCGGATGAAAATAATG
* * * * * * *
25849492 AAGCAAAGCTCAACGTCCTTTATGTTACAGTTGAGTGGAGTG-AG-ATTTCA-AATCCAAT-CTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCA--CCAGAATCCTATAC--
* * * * * *
25849553 CCTAGTGAGGTAC-GAAGAAGT--GAGTCAAAA-CA--
62 CC--CTGAGGTTCTG-TG-GGTCGGA-TGAAAATAATG
* * * * * * * * *
25849585 AAGCAGATCTCAACGTCACTAAGGTTATAGTGGATTAGAGTGAAGCACCAAAATCTTATACCGCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* *
25849650 GA-GTTGTAGTGGGTCGGATAAAAATAATG
66 GAGGTTCT-GTGGGTCGGATGAAAATAATG
* * * ** *
25849679 AAGCAGAGCTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAAACTTCA-AATCCCAT-CTTCC
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATAC--CC
* * ** * * *
25849742 TGGTGAGGTACATAG-AAGT-GGGTTAAAAT-AGG
64 --CTGAGGTTC-T-GTGGGTCGGATGAAAATAATG
* * **
25849774 AAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTAGAGTGAAGCAATAGAATCCTATA-CCCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* * * * *
25849838 TATGTTGTAGTGGGTCGAATGAAAATAATC
66 GAGGTTCT-GTGGGTCGGATGAAAATAATG
* * * * * *
25849868 CAGCAGAGCTCAACATCCCTAAGGTTATAGTGGAGTGGAGTG-AG-ACTTCA-AATCTCATCTTC
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAATC-C-TATAC
*** * * * * * * *
25849930 TTGGTGAGGTGCAGAGAAGT-GGGTCAAAA-CA--
62 -CCCTGAGGTTCTGTG-GGTCGGATGAAAATAATG
** * * * * * *
25849961 AAGTGGATCTCAACGTCCCCGAGGTTACAATAGAGTGGAGTGAAGCACCAAAATTCTATACCCCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* * **
25850026 GA-GTTGTAGTAGGTTAGATGAAAATAATG
66 GAGGTTCT-GTGGGTCGGATGAAAATAATG
* ** * * *
25850055 AAGCAGAGTTCAACGTCTTTGAGGTTACAGTAGATTGCAGTG-AG-ACTTCA-AATCCTAT-CTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAATCCTATAC--
* * * * * * * *
25850116 CCGAGTGAGGTACAGAGAAGT-GGGTCAAAA-CA--
62 CC--CTGAGGTTCTGTG-GGTCGGATGAAAATAATG
** * * * * * *** *
25850148 AAGTGGATCCCAATGTCCCTGAGGTTACAGTAGAGTGGAGTGAAACTTTA-AATCATAT-CTTCC
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATAC--CC
* * * * * * * *
25850211 TAGTGAGGTACAGAGAAGT-GGGTCAAAACAA--
64 --CTGAGGTTCTGTG-GGTCGGATGAAAATAATG
* * * * * *
25850242 AA-CGGATCTCAACATCCTTGAGGTTACAGCGGAGTGGAGTGAAACACCAGAATCCTATACCCCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* * * *
25850306 GAGCTACAGT-GGTCGAATGAAAATAATG
66 GAGGTTCTGTGGGTCGGATGAAAATAATG
* * * * * *
25850334 AAGTAGAGCTAAACGTCCTTTAGGTTACAGTGGAGTGGAGTG-AG-ACTTTA-AATCCAAT-CTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAATCCTATAC--
* * *** * * * *
25850395 CCTAGTGAGGTACAAAGAAGT-GGGTTAAAACAA-G
62 CC--CTGAGGTTCTGTG-GGTCGGATGAAAATAATG
* * * * * ** * * * *
25850429 TAGCAAATCTCAAAGTTCCTGAGGTTATTGTGGAGTGTAGTAAAGCACTAGAATCTTATACCCCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* *
25850494 GA-GTTGTAGTCGGTCGGATGAAAATAATG
66 GAGGTTCT-GTGGGTCGGATGAAAATAATG
* * * * * *
25850523 AAG-ATGAGCTCAACGTCCCTAATGTTACAGTAGAGTGAAGTG-AG-ACTTCA-AATCCCATTTT
1 AAGCA-GAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAAT-CC-TATA
** * * * * * * *
25850584 CCTGGTGAGGTACAGAGAAGT-GGGTCAAAACAA--
61 CC-CCTGAGGTTCTGTG-GGTCGGATGAAAATAATG
* * * * *
25850617 ATAGTAGATCTCAACATCCCTGAGGTTACAATGGAGCGGAGTGAAGCACCAGAATCCTATA-CCC
1 A-AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCC
* * * * *
25850681 T-AGATTTGTAGTGGGTCGAATAAAAATAAAG
65 TGAG-GTTCT-GTGGGTCGGATGAAAATAATG
* * * * * *
25850712 AAGTAGAGCTCAACATCCTTGAGGTTATAGTGGAGTTGAGTG-AG-ACTTCA-AATCCCAT-CTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAATCCTATAC--
* * * * *
25850773 CCTGGTGAGGTACAGAGAAGT--GA-GTAAAA-AA--
62 CC--CTGAGGTTCTGTG-GGTCGGATG-AAAATAATG
* * ** * * * * * ****
25850804 AAGAAAATTTCAACGTCACTAAGGTTATAGTGGATTGGAGTGAAGCACCAAAATCCTATATGGTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* *
25850869 GA-GTTGTAGTGGGTCGAATGAAAATAATG
66 GAGGTTCT-GTGGGTCGGATGAAAATAATG
* * * ** * *
25850898 AAGCAGAGATCAACGTCCCTGAGGTTACAGTGGAGTGAAGTGAAACTTCA-AATGCCATCTTCCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAAT-CC-TATACC-
** * * ****** * * *
25850962 GGTGAGGTAC-ATAAAAAAGAGTTAAAA-CAGG
63 CCTGAGGTTCTGTGGGTCGGA-TGAAAATAATG
* * * *
25850993 AAGCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTAGAGTGAAGCACTAGAATCCTATACCCCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* * *
25851058 -AAGTTACAGTGGGTCGGATG-AAATAATCC
66 GAGGTT-CTGTGGGTCGGATGAAAATAAT-G
*
25851087 AA-CAGAGCTCAACATCCCTGAGGTTACAGTGGAGTGGAGTG-AG-ACTTCA-AATCCTAT-CTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAATCCTATAC--
** * * * ** * * *
25851147 CTTGGTGAGGTACAGAGAATTAGG-TCAAAA-CA--
62 C--CCTGAGGTTCTGTG-GGTCGGATGAAAATAATG
* * * * * * **
25851179 AAGCAGATCTCAACGTCCTTGAGGTTACAATAGAGTGGAGTGAAGCACAAAAATTTTATACCCCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* ** * *
25851244 GA-GTTGTAGTGGGTTAGATAAAAATAATA
66 GAGGTTCT-GTGGGTCGGATGAAAATAATG
** * * * * * **
25851273 AAATAGAGCTCAACATCCCTAAGGTTGCAGTAGAGTGGAGTGAAACTTCA-AATCCTAT-CTTCC
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATAC--CC
* * * * * * ** **
25851336 AAGTAAGGTACAGAGAAGT-GG--GCCAA-AACA
64 --CTGAGGTTCTGTG-GGTCGGATGAAAATAATG
* * * * *
25851366 AAGC-GAATCTAAACGTCCCTGAGGTTACAGCGGAGTGGAGTAAAGCACCAGAATCCTATACCCA
1 AAGCAG-AGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCC
* * *
25851430 TGA-GTTGCAGTGGGTCAGATGAAAATAATT
65 TGAGGTT-CTGTGGGTCGGATGAAAATAATG
* * * *
25851460 AAGTAGAGCTCAACGTCACTGAGGTTATAGTGGAGTGGAGTG-AG-ACTTCA-AATCCAAT-CTT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAATCCTATAC--
* * *** * *
25851521 CCTGATGAGGTACAAAGAAGT--GAGTTAAAAT-A-G
62 CC--CTGAGGTTCTGTG-GGTCGGA-TGAAAATAATG
* * * ***
25851554 ATAGCAGATCTCAAAGTCCCTGA-GTATACAGTGGAGTGCAGTGAAGCACCAGAATCCTATATTG
1 A-AGCAGAGCTCAACGTCCCTGAGGT-TACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCC
* * * *
25851618 CTGA-GTTGTAGTGTGTCGGATGAAATTAATA
64 CTGAGGTTCT-GTGGGTCGGATGAAAATAATG
* * * * * *
25851649 AAGTA-AGGCTCAACGTCCCTAAGGTTATAGTAGAGTGGACTG-AG-ACTTCA-AATCCCAT-CT
1 AAGCAGA-GCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC--CAGAATCCTATAC-
* * * * * * * * *
25851709 TCCTGGTGAGGTACAGAGAAGT-GGGTTAAAA-CAGG
62 -CC--CTGAGGTTCTGTG-GGTCGGATGAAAATAATG
* * * * ** *
25851744 TAGTAGATCTCAACGTCCCTGAGATTACAGTGGAGTAAAGTGAAGCACTAGAATCCTATACCCCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
* * * * *
25851809 -AAGTTACAGTAGATCGAATGAAAATAATG
66 GAGGTT-CTGTGGGTCGGATGAAAATAATG
* *
25851838 AAGCAGAGCTCAACGTTCTTGAGGTTACAGTGGAGTGGAGTGA
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGA
25851881 GACTTCAAGT
Statistics
Matches: 2421, Mismatches: 797, Indels: 596
0.63 0.21 0.16
Matches are distributed among these distances:
89 9 0.00
90 47 0.02
91 99 0.04
92 154 0.06
93 676 0.28
94 683 0.28
95 412 0.17
96 256 0.11
97 78 0.03
98 7 0.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (94 bp):
AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCT
GAGGTTCTGTGGGTCGGATGAAAATAATG
Found at i:25848789 original size:376 final size:375
Alignment explanation
Indices: 25845283--25850191 Score: 4532
Period size: 376 Copynumber: 13.1 Consensus size: 375
25845273 AGTAGAGTTT
* * * * * * * * ** * *
25845283 AACGTCCATGAGGTTACAGTGAAATGGATTGAAGCACCAAAATCTTATACCCCTGAGTTACAATA
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * ** * * *
25845348 GGTCAGATGAAAGTAATGAAGCATAGCTCAACGTCTTTGAGGTTACAGTGGAGTGGAATGAAACT
66 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGACT
* * * * * * *
25845413 TAAAATCCTATCTTCCTGATAAGGTATAGAGAAGTGGGTTAAAATAGGTAG-TGAATCTCAATGT
131 TCAAATCC-ATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAG-ATCTCAAAGT
* *
25845477 CCCTGAGGTTATAGTGGAGTGGAGTGAAGCATCAGAATCCTATACCCCTGAGTTGTAGTAGGTCG
194 CCCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCG
* * * * *
25845542 GATG-AAGTAATGAATTAGAGCTCAATGTCCCTAAGGTTACAGTAGAGTGGGGTGAGACTTCAAA
259 GATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAA
* * * *
25845606 TCCCATATCTT--TGGTTAGGTACAAAGAAGT-GGTCAAAGCAAAGCAGATCTC
324 TCCC--ATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTC
* * * * * * * * * *
25845657 AACGTCCCTGAGATTAAAGTGGAGTGGAGTTAAGAACTAAAATCTTACACCCCTT-AGTTGCAGT
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTGTAGT
*** * * * * *
25845721 CAATCAGATGAAAATAATGAAGCAGGGCTCAACATCCCTAAGCTTATAGTGGAGTGGAGTGAGAC
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGAC
** * * * * * * *
25845786 TTCAAATCTCATCTTCCTAATGAGGTACAAATAAGTTGGTTATAATAGGTAGCAGATCTTAACGT
130 TTCAAATC-CATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAAAGT
* * ** * * *
25845851 CCCTAAGGTTACAGTGGAGTTTAGTGAAGCACCAGAATCCTATACTCTTGAGTTGTAGTGGGTTG
194 CCCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCG
* * * * * * *
25845916 AATGAAAATAATAAAGTAGAGCTTAACGTCCCAGAGGTTACAGTGGAGTGGAGTAAGACTTTAAA
259 GATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAA
* * * * * *
25845981 TCTCATATTGCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGAAACAGATCTC
324 TCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACA--AAGCGGATCTC
* * * * * *
25846035 AACTTTCCTAAGGTTATAGTGGAGTGGAGTAAAGCATCAGAATCTTATA-CCTCTGAGTTGTAGT
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCT-TGAGTTGTAGT
* * * *
25846099 GGGTCGGATG-AAGTAATGAAGTAGAGCTCAACGTCTCTAAGGTTACAGTGAAGTGGAGTGAGAC
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGAC
* * * * *
25846163 TACAAATCTCATC-TCCTTGGTGAGGTACAGAGAAGT-GGTCAAAGCA--AAGCAGATCTCAACG
130 TTCAAATC-CATCTTCC-TGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAAAG
* * * * * * *
25846224 TCCCTAAGGTTAAAGTGCAGTGGAGTGAAGCACCAGAATCCTATACCCTTTAGTTGCAGTTGGTC
193 TCCCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTC
* * * * *
25846289 GGATGATAATAATGACGCT-GGGCTCAACGTCCCTGAGGTTACAATAGGGTGGAGTGAGACTTCA
258 GGATGAAAATAATGAAG-TAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCA
** * * * * *
25846353 AATCCCATCTTCCTAATGAGGTACAAATAAGTGGGTTAAAACAAGTAGCAGATCTT
322 AATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAA--AGCGGATCTC
* * * *
25846409 AACGTCCCTAAGGTTAAATTGGAGTGGAGTGAAGCACCAGAATTCTATACTCTTGAGTTGTAGTG
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * * ** *
25846474 GGTCGAATAAAAATAATGAAGTAGAGCTTAACGTCCCCGAGGTTACAGTGGAGT-AATGTGAGAC
66 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGA-GTGAGAC
* * * * *
25846538 TTTAAATCCCATCTTACTTGTGAGGTACACAGAAGTGGGTTAAAACAGGTAAG-AGATCTCAACG
130 TTCAAAT-CCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGT-AGCAGATCTCAAAG
* * * * * *
25846602 T-TCTTACGGTTATAGTGGAGTGGAGTGAAGCATCAGAATCTTATACCCCTAAGTTGCAGTGGGT
193 TCCCTGA-GGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGT
* * * * * **
25846666 CGGATGAAAATAATGAAGGAGAGCTTAATGTCCCTGAGGTTACAATAGAGTGGAGTTAGACTAGA
257 CGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCA
** * ** * * * * *
25846731 AATCTAATTTTTTTGGTGAGGTACCA-AGAAGCGAGTCAAAATAAAGCGGGTCTT
322 AATCCCATCTTCCTGGTGAGGTA-CAGAGAAGTGGGTCAAAACAAAGCGGATCTC
** * * *
25846785 AACGT-CCTAGAGGTTACAACGGAGTGGAATTAAGCACCAGAATCCTATACCCTTGAGTTGTTGT
1 AACGTCCCTA-AGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT
* * ** * *
25846849 GGGTCGGATGAAAATAATGAAGGAGAGCTCAACGTCTCTAAGGTTACAAAGGAATGAAGTGAGAC
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGAC
** * * **
25846914 TTCAAATCACATCTTTTTGGTGACGTACAGAGAAGTGGGTCAAAACA-AAATG--GATCTCAACA
130 TTCAAATC-CATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTA-GCAGATCTCAA-A
* * * ** * * * *
25846976 -TCCTTGAGGTTACAATATAGTGGAGTGAAGCACCATAATTCTATACCCCCGAGTTGCAGTGGGT
192 GTCCCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGT
** * * * * *
25847040 TAGTTGAAAATAATGAAGCA-ATGCTCAACCTCTCTGAGGTTACAGTAAAGTGGAGTGAGACTTC
257 CGGATGAAAATAATGAAGTAGA-GCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTC
* * * * * * * *
25847104 ACATCCTATCTTCCTAGTCAGGTATAGAGAAGTAGGTTAAAACAAAGAGGATCTC
321 AAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTC
* * * * * *
25847159 AACGTTCTTGAGGTTACAATGGAGTGGAGTGAAGCACGAGAATCCTATACCCCTATG-GTT-TAA
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA-CCCT-TGAGTTGTAG
** * * * * * *
25847222 TATGTTGGATAAAAATAATGAAGCAGAGCACAACGTCCCTGAGGTTATAGAGGAGTGGAGTGAGA
64 TGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGA
* * * * * *
25847287 CTTCAAATCCAATCTTCCTGGTGAGGTACAGAGGAGTGGGTTAAAACCGATAGTAGATCTTAGAG
129 CTTCAAATCC-ATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAAAG
* * * * *
25847352 TCCTTGAGGTTACAGTGGAGTGAAGTAAAGCACCAGAATCCTATA-CCCTGAGTTGTAATGGGTC
193 TCCCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTC
* * *
25847416 GGATGAAAATAATAAAGTAGAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAA
258 GGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAA
* * * * * ** *
25847481 ATCCCATCTTCCTGGTAAGATACAGAGAAGTGAGTAAAAACAGATTGGATATC
323 ATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTC
* * * * * * * *
25847534 AATGTCTCTGAGGTTATAGTGGAGTGGAGTGAAGAACTAGAATCCTATACCCCTGAGTTGCAGTG
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * ** * * **
25847599 GGTCGAATGAAAATAAAT-AAGTAGAGCTCAACGTCTTTGAGGTTACATTGGAGTTAAGTGAGAC
66 GGTCGGATGAAAAT-AATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGAC
* * * * * * * * *
25847663 TTCAAATCCCTTATTCCTAGTAAGATGCAGAGAAGTGAGTCAAAACA--AAGCAGATCTCAACA-
130 TTCAAAT-CCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAA-AG
** * * * ** * * * * * * *
25847725 TCAGTAAGGTTATAGTAGATTACAGAGAAGAACCAAAATCCTATACCGCTGAGTTGTAATGAGTA
193 TCCCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTC
* * * ** * *
25847790 TGATAAAAATAATGAAGCAGAGCTCAACGTCCCCAAGGTTACAGTGGAGTGGAGTGAAACTTCAA
258 GGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAA
* * * * * * * *
25847855 ATCCCATTTTCTTGGTGAGGTATAGAGAAGT-GGTTAAAATAGGTAGCAGATGTC
323 ATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACA--AAGCGGATCTC
** * * * * * ** * *
25847909 AACGT-CCTTTGGTTACAGTGGAGTAGAGTGAAGAACTAGATTCTTATACTTTTAAGTTGCAGTG
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * *
25847973 GGTCGTATGAAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTATAGTGGAGTGGTGTGAGACT
66 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGACT
* * * *
25848038 TCAAATGCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTCAAAACA--AAGCAAATCTCAACA-T
131 TCAAAT-CCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAA-AGT
* * * * * ** * * *
25848100 CCTTGAGATTATAATAGACTGGAGTGAAGCATTAAAATTCTATACCCCTGAGTTGCT-GTGGGTT
194 CCCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTG-TAGTGGGTC
* ** * * * *
25848164 AGATGAAAATAATGAAACAGTGCTCAATGTCCCTGAGGTTACAGTAAAGTAGAGTGAGACTTCAA
258 GGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAA
** ** * ** * * *
25848229 ATCATATCTTCCAAGTCAGGTGTAGAGAAGTGGGTCAAAATAAAGCAGATCTT
323 ATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTC
** * * * *
25848282 AACGTCTTTGAGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGGTTCT-GT
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGA-GTTGTAGT
*
25848346 GGGTCGGATGAAAATAATGAAGCAGAGCACAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGAC
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGAC
* * *
25848411 TTCAAATCCAATCTTTCTGGTGAGGTACAGAGGAGTGGGTTAAAATAGGTAGCAGATCTCAAAGT
130 TTCAAATCC-ATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAAAGT
* * * *
25848476 CCTTGAGGTTATAGTGGAGTGTAGTGAAGCACCAGAATCTTATACCCCTGAGTTATAGTGGGTCG
194 CCCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCG
* * *
25848541 GATGAAAATAATAAAGTAGAGCTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAA
259 GATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAA
* * * * *
25848606 TCCCATCTTCCTGGTGAGATATAGAGAAGTGAGTTAAAACAAAGCGGATCTT
324 TCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTC
* *** * *
25848658 AACGTCCCTAAGGTTAGAGTGGAGTGGAGTGAAGCATTGGAATCCTATACTCTTGAGTTATAGTG
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * * * * * *
25848723 GG-CTGGATGAAAATAATGAAGCAGAGCTTAACGTTCCTAAAGTTTCAGCGGAATAGAGTAAGAC
66 GGTC-GGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGAC
* * * *
25848787 TTCAAATCCCATCTTACTAGTGAGGTACAGAGAAATGGGTTAAAACAGGTAGCAGATCTC-TAGA
130 TTCAAAT-CCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAAAG-
* * * * *
25848851 TCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAAATCCTATACCCCTGAGTTGTAGTTGGTT
193 TCCCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTC
* * * * * *
25848916 AGATGAAAATAATGAAGGAGAGCTCAACGTCCTTGAGATTATAGTGGAGTGGAGTGAGACTTCAA
258 GGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAA
* ** * * * * * *
25848981 ATCCTATCTTATTTGTGAGGTACAGAGAAGTGGGTCAAAATAATGCGTATTTG
323 ATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTC
* ** * * * * * * * * *
25849034 AAAGTCTTTAAGGTTATAATGGAGTGGAGTAAAGCACTAAAATCTTATACCCCTGAGTTATAGTC
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * * *
25849099 GGTCAGATGAAAATAATCAAGCAGAGCTCAACGTCCCTGAGGTTATAGTAGAGTGGAGTGAGACT
66 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGACT
** * * * *
25849164 TCAAATCCCATCTTCCTAATGAGGTACATATAAGTGGGTTAAAACAGGTAGTAGATCTCAACGTC
131 TCAAAT-CCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAAAGTC
* * * * *
25849229 CCTAAGGTTATAGTGGAGTGGAATGAAGCACCAGAATCCTATACTCATGAGTTGTAGTGGGTCGA
195 CCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGG
* * * *
25849294 ATGAAAATAATGAAGTAGAGCTTAACGTCTCTTAGGTTACAGTAGAGTGGAGTGAGAGTTCAAAT
260 ATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAAT
* * * * * * * *
25849359 CCTATCTTTCTTGTGAGGTATAGATAAGTGGGTCAAAATAAAGAGAATCTC
325 CCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTC
* * **
25849410 AATGTCCCTAAGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGT-
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
* * * * * * *
25849474 GGTCGGACGAAAATAATGAAGCAAAGCTCAACGTCCTTTATGTTACAGTTGAGTGGAGTGAGATT
66 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGACT
* * * * *
25849539 TCAAATCCAATCTTCCTAGTGAGGTAC-GAAGAAGTGAGTCAAAACA--AAGCAGATCTCAACGT
131 TCAAATCC-ATCTTCCTGGTGAGGTACAG-AGAAGTGGGTTAAAACAGGTAGCAGATCTCAAAGT
* * * * * * *
25849601 CACTAAGGTTATAGTGGATTAGAGTGAAGCACCAAAATCTTATACCGCTGAGTTGTAGTGGGTCG
194 CCCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCG
* * * *
25849666 GATAAAAATAATGAAGCAGAGCTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAAACTTCAAA
259 GATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAA
* * * *
25849731 TCCCATCTTCCTGGTGAGGTACATAGAAGTGGGTTAAAATAGGAAGCAGATCTC
324 TCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACA--AAGCGGATCTC
* * **
25849785 AACGTCCCTGAGGTTACAGTGGAGTAGAGTGAAGCAATAGAATCCTATACCCTT-ATGTTGTAGT
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGA-GTTGTAGT
* ** * *
25849849 GGGTCGAATGAAAATAATCCAGCAGAGCTCAACATCCCTAAGGTTATAGTGGAGTGGAGTGAGAC
65 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGAC
* * * * *
25849914 TTCAAATCTCATCTTCTTGGTGAGGTGCAGAGAAGTGGGTCAAAACAAAGT-G--GATCTCAACG
130 TTCAAATC-CATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAAC-AGGTAGCAGATCTCAAAG
* * * * * * * *
25849976 TCCCCGAGGTTACAATAGAGTGGAGTGAAGCACCAAAATTCTATACCCCTGAGTTGTAGTAGGTT
193 TCCCTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTC
* * * ** * *
25850041 AGATGAAAATAATGAAGCAGAGTTCAACGTCTTTGAGGTTACAGTAGATTGCAGTGAGACTTCAA
258 GGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAA
* * *
25850106 ATCCTATCTTCC-GAGTGAGGTACAGAGAAGTGGGTCAAAACAAAGTGGATCCC
323 ATCCCATCTTCCTG-GTGAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTC
* * *
25850159 AATGTCCCTGAGGTTACAGTAGAGTGGAGTGAA
1 AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAA
25850192 ACTTTAAATC
Statistics
Matches: 3695, Mismatches: 760, Indels: 160
0.80 0.16 0.03
Matches are distributed among these distances:
372 1 0.00
373 236 0.06
374 1265 0.34
375 589 0.16
376 1306 0.35
377 86 0.02
378 208 0.06
379 4 0.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (375 bp):
AACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGACT
TCAAATCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAAAGTCC
CTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGGA
TGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAATC
CCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTC
Found at i:25849504 original size:93 final size:93
Alignment explanation
Indices: 25849220--25849910 Score: 267
Period size: 93 Copynumber: 7.4 Consensus size: 93
25849210 GGTAGTAGAT
* * * * *
25849220 CTCAACGTCCCTAAGGTTATAGTGGAGTGGAATGAAGCACCAGAATCCTATACTCATGAGTTGTA
1 CTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTATA
* * * *
25849285 GTGGGTCGAATGAAAATAATGAAGTAGAG
66 GTAGGTCGGACGAAAATAATGAAG-AAAG
* * * * ** *
25849314 CTTAACGTCTCTTAGGTTACAGTAGAGTGGAGTGAGAG-TTCA-AATCCTAT-CTTTCTTGTGAG
1 CTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGA-AGCACCAGAATCCTATAC---CCT-TGAG
* * * * * *
25849376 GTATAGATAAGTGGGTC-AAAATAAAG-AG-AAT
61 TTATAG-TAGGTCGGACGAAAATAATGAAGAAAG
* * *
25849407 CTCAATGTCCCTAAGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACA
1 CTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTATA
25849472 GT-GGTCGGACGAAAATAATGAAGCAAAG
66 GTAGGTCGGACGAAAATAATGAAG-AAAG
* * * * * *
25849500 CTCAACGTCCTTTATGTTACAGTTGAGTGGAGTG-AG-ATTTCA-AATCCAAT-CTTCCTAGTGA
1 CTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCA--CCAGAATCCTATAC--CCT--TGA
* * * * * * * *
25849561 GGTACGAAG-AAGT-GAGTC-AAAACAAAGCAG--AT
60 GTTA--TAGTAGGTCG-GACGAAAATAATGAAGAAAG
* * * * * * *
25849593 CTCAACGTCACTAAGGTTATAGTGGATTAGAGTGAAGCACCAAAATCTTATACCGC-TGAGTTGT
1 CTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACC-CTTGAGTTAT
* ** *
25849657 AGTGGGTCGGATAAAAATAATGAAGCAGAG
65 AGTAGGTCGGACGAAAATAATGAAG-AAAG
* * * * ** *
25849687 CTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAAACTTCA-AATCCCAT-CTTCCTGGTGAGG
1 CTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATAC--CCT--TGA-G
* * *** * * *
25849750 TACATAG-AAGT-GGGTTAAAAT-AGGAAGCAGAT
61 T-TATAGTAGGTCGGACGAAAATAATGAAG-AAAG
* * ** *
25849782 CTCAACGTCCCTGAGGTTACAGTGGAGTAGAGTGAAGCAATAGAATCCTATACCCTT-ATGTTGT
1 CTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGA-GTTAT
* * * ** *
25849846 AGTGGGTCGAATGAAAATAATCCAGCAGAG
65 AGTAGGTCGGACGAAAATAATGAAG-AAAG
* *
25849876 CTCAACATCCCTAAGGTTATAGTGGAGTGGAGTGA
1 CTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGA
25849911 GACTTCAAAT
Statistics
Matches: 431, Mismatches: 120, Indels: 92
0.67 0.19 0.14
Matches are distributed among these distances:
89 7 0.02
90 12 0.03
91 30 0.07
92 20 0.05
93 120 0.28
94 120 0.28
95 60 0.14
96 44 0.10
97 15 0.03
98 3 0.01
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (93 bp):
CTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTATA
GTAGGTCGGACGAAAATAATGAAGAAAG
Found at i:25850001 original size:93 final size:92
Alignment explanation
Indices: 25849687--25850283 Score: 315
Period size: 93 Copynumber: 6.4 Consensus size: 92
25849677 TGAAGCAGAG
* * *
25849687 CTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCTCATCTTCC-GGTGAGGTA
* * * *
25849752 CATAGAAGTGGGTTAAAATAGGAAGCAGAT
65 CAGAGAAGTGGGTCAAAACA--AAGCGGAT
* * * * * * *
25849782 CTCAACGTCCCTGAGGTTACAGTGGAGTAGAGTGA-AGCAAT-AGAATC-C-TATACC-CTTATG
1 CTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGA-C-TTCA-AATCTCATCTTCCGGTGA-G
* ** * * ** * * * *
25849842 TTGTAGTG-GGTCGAATGAAAATAATCCAGCAGAG
62 GTACAGAGAAGT-GGGTCAAAACAA---AGCGGAT
* * * * * *
25849876 CTCAACATCCCTAAGGTTATAGTGGAGTGGAGTGAGACTTCAAATCTCATCTTCTTGGTGAGGTG
1 CTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCTCATCTTC-CGGTGAGGTA
*
25849941 CAGAGAAGTGGGTCAAAACAAAGTGGAT
65 CAGAGAAGTGGGTCAAAACAAAGCGGAT
* * * * ** *
25849969 CTCAACGTCCCCGAGGTTACAATAGAGTGGAGTGAAGCAC--CAAAAT-TC-TATACCCCTGAGT
1 CTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTG-AG-ACTTC-AAATCTCATCTTCCGGTGAGG
** * * * * *
25850030 TGTAGTAG--GTTAGATGAAAATAATGAAGCAGAGT
63 TACAG-AGAAG-TGGGTCAAAA-CA--AAGCGGA-T
** * *
25850064 -TCAACGTCTTTGAGGTTACAGTAGATTGCAGTGAGACTTCAAATC-CTATCTTCCGAGTGAGGT
1 CTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCTC-ATCTTCCG-GTGAGGT
*
25850127 ACAGAGAAGTGGGTCAAAACAAAGTGGAT
64 ACAGAGAAGTGGGTCAAAACAAAGCGGAT
* * * * *
25850156 CCCAATGTCCCTGAGGTTACAGTAGAGTGGAGTGAAACTTTAAATCAT-ATCTTCCTAGTGAGGT
1 CTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAATC-TCATCTTCC-GGTGAGGT
*
25850220 ACAGAGAAGTGGGTCAAAACAAAACGGAT
64 ACAGAGAAGTGGGTCAAAACAAAGCGGAT
* * **
25850249 CTCAACATCCTTGAGGTTACAGCGGAGTGGAGTGA
1 CTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGA
25850284 AACACCAGAA
Statistics
Matches: 372, Mismatches: 94, Indels: 74
0.69 0.17 0.14
Matches are distributed among these distances:
90 1 0.00
91 16 0.04
92 13 0.03
93 171 0.46
94 84 0.23
95 49 0.13
96 33 0.09
97 5 0.01
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (92 bp):
CTCAACGTCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCTCATCTTCCGGTGAGGTAC
AGAGAAGTGGGTCAAAACAAAGCGGAT
Found at i:25850680 original size:844 final size:841
Alignment explanation
Indices: 25849327--25850972 Score: 2259
Period size: 844 Copynumber: 2.0 Consensus size: 841
25849317 AACGTCTCTT
* * * * * * *
25849327 AGGTTACAGTAGAGTGGAGTGAGAGTTCAAATCCTATCTTTCTTGTGAGGTATAGATAAGTGGGT
1 AGGTTACAGTAGAGTGGAGTGAAACTTCAAATCATATCTTCCTAGTGAGGTACAGAGAAGTGGGT
* ** *
25849392 CAAAATAAAGAGAATCTCAATGTCCCTAAGGTTACAGCGGAGTGGAGTGAAGCACCAGAATCCTA
66 CAAAACAAAGAGAATCTCAACATCCCTAAGGTTACAGCGGAGTGGAGTGAAACACCAGAATCCTA
* * * * *
25849457 TACCCTTGAGTTACAGTGGTCGGACGAAAATAATGAAGCAAAGCTCAACGTCCTTTATGTTACAG
131 TACCCCTGAGCTACAGTGGTCGAACGAAAATAATGAAGCAAAGCTAAACGTCCTTTAGGTTACAG
* *
25849522 TTGAGTGGAGTGAGATTTCAAATCCAATCTTCCTAGTGAGGTACGAAGAAGTGAGTCAAAACAAA
196 TGGAGTGGAGTGAGATTTCAAATCCAATCTTCCTAGTGAGGTACAAAGAAGTGAGTCAAAACAAA
* * * * *
25849587 GCAGATCTCAACGTCACTAAGGTTATAGTGGATTAGAGTGAAGCACCAAAATCTTATACCGCTGA
261 GCAAATCTCAAAGTCACTAAGGTTATAGTGGAGTAGAGTAAAGCACCAAAATCTTATACCCCTGA
* * * *
25849652 GTTGTAGTGGGTCGGATAAAAATAATGAAGCAGAGCTCAACGTCCTTGAGGTTACAGTAGAGTGG
326 GTTGTAGTCGGTCGGATAAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTAGAGTGA
* * * *
25849717 AGTGAAACTTCAAATCCCATCTTCCTGGTGAGGTACATAGAAGTGGGTTAAAATAGGAAGCAGAT
391 AGTGAAACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGAAAGCAGAT
* * * * *
25849782 CTCAACGTCCCTGAGGTTACAGTGGAGTAGAGTGAAGCAATAGAATCCTATACCCT-TATGTTGT
456 CTCAACATCCCTGAGGTTACAATGGAGCAGAGTGAAGCAACAGAATCCTATACCCTAGAT-TTGT
* * *
25849846 AGTGGGTCGAATGAAAATAATCCAGCAGAGCTCAACATCCCTAAGGTTATAGTGGAGTGGAGTGA
520 AGTGGGTCGAATAAAAATAAACAAGCAGAGCTCAACATCCCTAAGGTTATAGTGGAGTGGAGTGA
* * * * * ***
25849911 GACTTCAAATCTCATCTTCTTGGTGAGGTGCAGAGAAGTGGGTCAAAACAAAGTGGATCTCAACG
585 GACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGT-AAAAAAAAGAAAATCTCAACG
* * * *
25849976 TCCCCGAGGTTACAATAGAGTGGAGTGAAGCACCAAAATTCTATACCCCTGAGTTGTAGTAGGTT
649 TCACCAAGGTTACAATAGAGTGGAGTGAAGCACCAAAATCCTATACCCCTGAGTTGTAGT-GGGT
* ** * * *
25850041 AG-ATGAAAATAATGAAGCAGAGTTCAACGTCTTTGAGGTTACAGTAGATTGCAGTGAGACTTCA
713 AGAATGAAAATAATGAAGCAGAGATCAACGTCCCTGAGGTTACAGTAGAGTGAAGTGAAACTTCA
25850105 AAT-CCTATCTTCC-GAGTGAGGTACAGAGAAGTGGGTCAAAACAAAGTGGATCCCAATGTCCCT
778 AATGCC-ATCTTCCTG-GTGAGGTACAGAGAAGTGGGTCAAAACAAAGTGGATCCCAATGTCCCT
25850168 G
841 G
*
25850169 AGGTTACAGTAGAGTGGAGTGAAACTTTAAATCATATCTTCCTAGTGAGGTACAGAGAAGTGGGT
1 AGGTTACAGTAGAGTGGAGTGAAACTTCAAATCATATCTTCCTAGTGAGGTACAGAGAAGTGGGT
* * *
25850234 CAAAACAAA-ACGGATCTCAACATCCTTGAGGTTACAGCGGAGTGGAGTGAAACACCAGAATCCT
66 CAAAACAAAGA-GAATCTCAACATCCCTAAGGTTACAGCGGAGTGGAGTGAAACACCAGAATCCT
* * *
25850298 ATACCCCTGAGCTACAGTGGTCGAATGAAAATAATGAAGTAGAGCTAAACGTCCTTTAGGTTACA
130 ATACCCCTGAGCTACAGTGGTCGAACGAAAATAATGAAGCAAAGCTAAACGTCCTTTAGGTTACA
* *
25850363 GTGGAGTGGAGTGAGACTTT-AAATCCAATCTTCCTAGTGAGGTACAAAGAAGTGGGTTAAAACA
195 GTGGAGTGGAGTGAGA-TTTCAAATCCAATCTTCCTAGTGAGGTACAAAGAAGTGAGTCAAAACA
* * * *
25850427 AGTAGCAAATCTCAAAGTTC-CTGAGGTTATTGTGGAGT-GTAGTAAAGCACTAGAATCTTATAC
259 A--AGCAAATCTCAAAG-TCACTAAGGTTATAGTGGAGTAG-AGTAAAGCACCAAAATCTTATAC
* *
25850490 CCCTGAGTTGTAGTCGGTCGGATGAAAATAATGAAG-ATGAGCTCAACGTCCCTAATGTTACAGT
320 CCCTGAGTTGTAGTCGGTCGGATAAAAATAATGAAGCA-GAGCTCAACGTCCCTAAGGTTACAGT
* *
25850554 AGAGTGAAGTGAGACTTCAAATCCCATTTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACA-AA
384 AGAGTGAAGTGAAACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGAA
* * *
25850618 TAGTAGATCTCAACATCCCTGAGGTTACAATGGAGCGGAGTGAAGCACCAGAATCCTATACCCTA
449 -AGCAGATCTCAACATCCCTGAGGTTACAATGGAGCAGAGTGAAGCAACAGAATCCTATACCCTA
* * * *
25850683 GATTTGTAGTGGGTCGAATAAAAATAAAGAAGTAGAGCTCAACATCCTTGAGGTTATAGTGGAGT
513 GATTTGTAGTGGGTCGAATAAAAATAAACAAGCAGAGCTCAACATCCCTAAGGTTATAGTGGAGT
* *
25850748 TGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTAAAAAAAAGAAAATT
578 GGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTAAAAAAAAGAAAATC
* * * * * ****
25850813 TCAACGTCACTAAGGTTATAGTGGATTGGAGTGAAGCACCAAAATCCTATATGGTTGAGTTGTAG
643 TCAACGTCACCAAGGTTACAATAGAGTGGAGTGAAGCACCAAAATCCTATACCCCTGAGTTGTAG
* *
25850878 TGGGTCGAATGAAAATAATGAAGCAGAGATCAACGTCCCTGAGGTTACAGTGGAGTGAAGTGAAA
708 TGGGTAGAATGAAAATAATGAAGCAGAGATCAACGTCCCTGAGGTTACAGTAGAGTGAAGTGAAA
25850943 CTTCAAATGCCATCTTCCTGGTGAGGTACA
773 CTTCAAATGCCATCTTCCTGGTGAGGTACA
25850973 TAAAAAAGAG
Statistics
Matches: 698, Mismatches: 94, Indels: 23
0.86 0.12 0.03
Matches are distributed among these distances:
841 1 0.00
842 230 0.33
843 145 0.21
844 318 0.46
845 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (841 bp):
AGGTTACAGTAGAGTGGAGTGAAACTTCAAATCATATCTTCCTAGTGAGGTACAGAGAAGTGGGT
CAAAACAAAGAGAATCTCAACATCCCTAAGGTTACAGCGGAGTGGAGTGAAACACCAGAATCCTA
TACCCCTGAGCTACAGTGGTCGAACGAAAATAATGAAGCAAAGCTAAACGTCCTTTAGGTTACAG
TGGAGTGGAGTGAGATTTCAAATCCAATCTTCCTAGTGAGGTACAAAGAAGTGAGTCAAAACAAA
GCAAATCTCAAAGTCACTAAGGTTATAGTGGAGTAGAGTAAAGCACCAAAATCTTATACCCCTGA
GTTGTAGTCGGTCGGATAAAAATAATGAAGCAGAGCTCAACGTCCCTAAGGTTACAGTAGAGTGA
AGTGAAACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGAAAGCAGAT
CTCAACATCCCTGAGGTTACAATGGAGCAGAGTGAAGCAACAGAATCCTATACCCTAGATTTGTA
GTGGGTCGAATAAAAATAAACAAGCAGAGCTCAACATCCCTAAGGTTATAGTGGAGTGGAGTGAG
ACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGAGTAAAAAAAAGAAAATCTCAACGTC
ACCAAGGTTACAATAGAGTGGAGTGAAGCACCAAAATCCTATACCCCTGAGTTGTAGTGGGTAGA
ATGAAAATAATGAAGCAGAGATCAACGTCCCTGAGGTTACAGTAGAGTGAAGTGAAACTTCAAAT
GCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGTGGATCCCAATGTCCCTG
Found at i:25850893 original size:375 final size:374
Alignment explanation
Indices: 25850162--25851923 Score: 1937
Period size: 375 Copynumber: 4.7 Consensus size: 374
25850152 GGATCCCAAT
* * ** *
25850162 GTCCCTGAGGTTACAGTAGAGTGGAGTGAAACTTTAAATCATATCTTCCTAGTGAGGTACAGAGA
1 GTCCCTAAGGTTACAGTAGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGA
* * * *
25850227 AGTGGGTCAAAACAAAACG-GATCTCAACATCCTTGAGGTTACAGCGGAGTGGAGTGAAACACCA
66 AGTGGGTCAAAACAAAA-GAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCA
* *
25850291 GAATCCTATACCCCT-GAGCTACAGT-GGTCGAATGAAAATAATGAAGTAGAGCTAAACGTCCTT
130 GAATCCTATACCCCTAGAGTTACAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCTT
* * * * *
25850354 TAGGTTACAGTGGAGTGGAGTGAGACTTTAAATCCAATCTTCCTAGTGAGGTACAAAGAAGTGGG
195 GAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCAATCTTCCTGGTGAGGTACAGAGAAGTGAG
* ** * * * *
25850419 TTAAAACAAGTAGCAAATCTCAAAGTTCCTGAGGTTATTGTGGAGTGTAGTAAAGCACTAGAATC
260 -TAAAACAA-AAGCAAATCTCAAAG-TCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAAATC
* * *
25850484 TTATACCCCTGAGTTGTAGTCGGTCGGATGAAAATAATGAAGATGAGCTCAAC
322 CTATACCCCTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGATGAGCTCAAC
* * * *
25850537 GTCCCTAATGTTACAGTAGAGTGAAGTGAGACTTCAAATCCCATTTTCCTGGTGAGGTACAGAGA
1 GTCCCTAAGGTTACAGTAGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGA
* * *
25850602 AGTGGGTCAAAACAAATAGTAGATCTCAACATCCCTGAGGTTACAATGGAGCGGAGTGAAGCACC
66 AGTGGGTCAAAACAAA-AG-AGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACC
* ** * * *
25850667 AGAATCCTATA-CCCTAGATTTGTAGTGGGTCGAATAAAAATAAAGAAGTAGAGCTCAACATCCT
129 AGAATCCTATACCCCTAGAGTTACAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCT
* * *
25850731 TGAGGTTATAGTGGAGTTGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGA
194 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCAATCTTCCTGGTGAGGTACAGAGAAGTGA
* * * * * *
25850796 GTAAAA-AAAAGAAAATTTCAACGTCACTAAGGTTATAGTGGATTGGAGTGAAGCACCAAAATCC
259 GTAAAACAAAAGCAAATCTCAAAGTC-CTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAAATCC
**** *
25850860 TATATGGTTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGCA-GAGATCAAC
323 TATACCCCTGAGTTGTAGTGGGTCGAATGAAAATAATGAAG-ATGAGCTCAAC
* * * * * *
25850912 GTCCCTGAGGTTACAGTGGAGTGAAGTGAAACTTCAAATGCCATCTTCCTGGTGAGGTACATAAA
1 GTCCCTAAGGTTACAGTAGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGA
** * * * * * *
25850977 AAAGAGTTAAAACAGGAAGCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTAGAGTGAAGCACT
66 AGTGGGTCAAAACA-AAAG-AGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACC
* * * *
25851042 AGAATCCTATACCCCTA-AGTTACAGTGGGTCGGATG-AAATAATCCAA-CAGAGCTCAACATCC
129 AGAATCCTATACCCCTAGAGTTACAGTGGGTCGAATGAAAATAAT-GAAGTAGAGCTCAACGTCC
* * * *
25851104 CTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCTATCTTCTTGGTGAGGTACAGAGAA-TT
193 TTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCAATCTTCCTGGTGAGGTACAGAGAAGTG
* * * * *
25851168 AGGTCAAAAC-AAAGCAGATCTCAACGTCCTTGAGGTTACAATAGAGTGGAGTGAAGCACAAAAA
258 A-GT-AAAACAAAAGCAAATCTCAAAGTCC-TGAGGTTACAGTGGAGTGGAGTGAAGCACCAAAA
** * * *
25851232 TTTTATACCCCTGAGTTGTAGTGGGT-TAGATAAAAATAAT-AAAATAGAGCTCAAC
320 TCCTATACCCCTGAGTTGTAGTGGGTCGA-ATGAAAATAATGAAGAT-GAGCTCAAC
* * * ** *
25851287 ATCCCTAAGGTTGCAGTAGAGTGGAGTGAAACTTCAAATCCTATCTTCCAAGTAAGGTACAGAGA
1 GTCCCTAAGGTTACAGTAGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGA
* * * * *
25851352 AGTGGGCCAAAAC-AAAGCGAATCTAAACGTCCCTGAGGTTACAGCGGAGTGGAGTAAAGCACCA
66 AGTGGGTCAAAACAAAAGAG-ATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCA
* * *
25851416 GAATCCTATACCCAT-GAGTTGCAGTGGGTC-AGATGAAAATAATTAAGTAGAGCTCAACGTCAC
130 GAATCCTATACCCCTAGAGTTACAGTGGGTCGA-ATGAAAATAATGAAGTAGAGCTCAACGTC-C
* * *
25851479 -TGAGGTTATAGTGGAGTGGAGTGAGACTTCAAATCCAATCTTCCTGATGAGGTACAAAGAAGTG
193 TTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCAATCTTCCTGGTGAGGTACAGAGAAGTG
* * * * *
25851543 AGTTAAAATAGATAGCAGATCTCAAAGTCCCTGA-GTATACAGTGGAGTGCAGTGAAGCACCAGA
258 AG-TAAAACA-AAAGCAAATCTCAAAGT-CCTGAGGT-TACAGTGGAGTGGAGTGAAGCACCAAA
*** * * * * *
25851607 ATCCTATATTGCTGAGTTGTAGTGTGTCGGATGAAATTAATAAAG-TAAGGCTCAAC
319 ATCCTATACCCCTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGATGA-GCTCAAC
* * *
25851663 GTCCCTAAGGTTATAGTAGAGTGGACTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGA
1 GTCCCTAAGGTTACAGTAGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGA
* ** * ** *
25851728 AGTGGGTTAAAACAGGTAGTAGATCTCAACGTCCCTGAGATTACAGTGGAGTAAAGTGAAGCACT
66 AGTGGGTCAAAACA-AAAG-AGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACC
* * * *
25851793 AGAATCCTATACCCCTA-AGTTACAGTAGATCGAATGAAAATAATGAAGCAGAGCTCAACGTTCT
129 AGAATCCTATACCCCTAGAGTTACAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCT
* * * *
25851857 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAGTCTC-ATCTTGCTGGTAAGGTATAGAGAAGTG
194 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATC-CAATCTTCCTGGTGAGGTACAGAGAAGTG
25851921 AGT
258 AGT
25851924 TAGAACCGGT
Statistics
Matches: 1154, Mismatches: 194, Indels: 76
0.81 0.14 0.05
Matches are distributed among these distances:
372 1 0.00
373 76 0.07
374 165 0.14
375 445 0.39
376 159 0.14
377 67 0.06
378 238 0.21
379 3 0.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (374 bp):
GTCCCTAAGGTTACAGTAGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGA
AGTGGGTCAAAACAAAAGAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAG
AATCCTATACCCCTAGAGTTACAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTCCTTG
AGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCAATCTTCCTGGTGAGGTACAGAGAAGTGAGT
AAAACAAAAGCAAATCTCAAAGTCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAAATCCTAT
ACCCCTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGATGAGCTCAAC
Found at i:25851942 original size:189 final size:188
Alignment explanation
Indices: 25850162--25851975 Score: 1775
Period size: 189 Copynumber: 9.7 Consensus size: 188
25850152 GGATCCCAAT
* * * * *
25850162 GTCCCTGAGGTTACAGTAGAGTGGAGTGAAACTTTAAATCATATCTTCCTAGTGAGGTACAGAGA
1 GTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATC-CATCTTCCTGGTGAGGTACAGAGA
* * * * * * * *
25850227 AGTGGGTCAAAACA--AAACGGATCTCAACATCCTTGAGGTTACAGCGGAGTGGAGTGAAACACC
65 AGTGAGTTAAAACAGGTAACAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACC
* ** *
25850290 AGAATCCTATACCCCTGAGCTACAGT-GGTCGAATGAAAATAATGAAGTAGAGCTAAAC
130 AGAATCCTATACCCCTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAAC
* * * * *
25850348 GTCCTTTAGGTTACAGTGGAGTGGAGTGAGACTTTAAATCCAATCTTCCTAGTGAGGTACAAAGA
1 GTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTACAGAGA
* * * * * * ** * * *
25850413 AGTGGGTTAAAACAAGTAGCAAATCTCAAAGTTCCTGAGGTTATTGTGGAGTGTAGTAAAGCACT
65 AGTGAGTTAAAACAGGTAACAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACC
* * *
25850478 AGAATCTTATACCCCTGAGTTGTAGTCGGTCGGATGAAAATAATGAAG-ATGAGCTCAAC
130 AGAATCCTATACCCCTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGTA-GAGCTCAAC
* * * * *
25850537 GTCCCTAATGTTACAGTAGAGTGAAGTGAGACTTCAAATCCCATTTTCCTGGTGAGGTACAGAGA
1 GTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTACAGAGA
* * ** ** * * *
25850602 AGTGGGTCAAAACAAATAGTAGATCTCAACATCCCTGAGGTTACAATGGAGCGGAGTGAAGCACC
65 AGTGAGTTAAAACAGGTAACAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACC
* * *
25850667 AGAATCCTATA-CCCTAGATTTGTAGTGGGTCGAATAAAAATAAAGAAGTAGAGCTCAAC
130 AGAATCCTATACCCCT-GAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAAC
* * * *
25850726 ATCCTTGAGGTTATAGTGGAGTTGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGA
1 GTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTACAGAGA
* * * * * * * *
25850791 AGTGAGTAAAAAAAAG-AA-A-ATTTCAACGTCACTAAGGTTATAGTGGATTGGAGTGAAGCACC
65 AGTGAGTTAAAACAGGTAACAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACC
* **** * *
25850853 AAAATCCTATATGGTTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGCAGAGATCAAC
130 AGAATCCTATACCCCTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAAC
* * * *
25850912 GTCCCTGAGGTTACAGTGGAGTGAAGTGAAACTTCAAATGCCATCTTCCTGGTGAGGTACATAAA
1 GTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTACAGAGA
** * *
25850977 AAAGAGTTAAAACAGG-AAGCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTAGAGTGAAGCAC
65 AGTGAGTTAAAACAGGTAA-CAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC
* * ** * * *
25851041 TAGAATCCTATACCCCTAAGTTACAGTGGGTCGGATG-AAATAATCCAA-CAGAGCTCAAC
129 CAGAATCCTATACCCCTGAGTTGTAGTGGGTCGAATGAAAATAAT-GAAGTAGAGCTCAAC
* *
25851100 ATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCTATCTTCTTGGTGAGGTACAGAGA
1 GTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTACAGAGA
* * * * *
25851165 A-TTAGGTCAAAACA---AAGCAGATCTCAACGTCCTTGAGGTTACAATAGAGTGGAGTGAAGCA
65 AGTGA-GTTAAAACAGGTAA-CAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCA
* * ** * * * *
25851226 CAAAAATTTTATACCCCTGAGTTGTAGTGGGT-TAGATAAAAATAATAAAATAGAGCTCAAC
128 CCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGA-ATGAAAATAATGAAGTAGAGCTCAAC
* * * * * ** *
25851287 ATCCCTAAGGTTGCAGTAGAGTGGAGTGAAACTTCAAATCCTATCTTCCAAGTAAGGTACAGAGA
1 GTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTACAGAGA
* ** * * *
25851352 AGTGGGCCAAAACA---AAGC-GAATCTAAACGTCCCTGAGGTTACAGCGGAGTGGAGTAAAGCA
65 AGTGAGTTAAAACAGGTAA-CAG-ATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCA
* * *
25851413 CCAGAATCCTATACCCATGAGTTGCAGTGGGTC-AGATGAAAATAATTAAGTAGAGCTCAAC
128 CCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGA-ATGAAAATAATGAAGTAGAGCTCAAC
* * * *
25851474 GTCACTGAGGTTATAGTGGAGTGGAGTGAGACTTCAAATCCAATCTTCCTGATGAGGTACAAAGA
1 GTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTACAGAGA
* * * * *
25851539 AGTGAGTTAAAATAGATAGCAGATCTCAAAGTCCCTGA-GTATACAGTGGAGTGCAGTGAAGCAC
65 AGTGAGTTAAAACAGGTAACAGATCTCAACGTCCCTGAGGT-TACAGTGGAGTGGAGTGAAGCAC
*** * * * *
25851603 CAGAATCCTATATTGCTGAGTTGTAGTGTGTCGGATGAAATTAATAAAGTA-AGGCTCAAC
129 CAGAATCCTATACCCCTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGA-GCTCAAC
* * * *
25851663 GTCCCTAAGGTTATAGTAGAGTGGACTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGA
1 GTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTACAGAGA
* ** * ** *
25851728 AGTGGGTTAAAACAGGTAGTAGATCTCAACGTCCCTGAGATTACAGTGGAGTAAAGTGAAGCACT
65 AGTGAGTTAAAACAGGTAACAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACC
* ** * * *
25851793 AGAATCCTATACCCCTAAGTTACAGTAGATCGAATGAAAATAATGAAGCAGAGCTCAAC
130 AGAATCCTATACCCCTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAAC
* * * * * *
25851852 GTTCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAGTCTCATCTTGCTGGTAAGGTATAGAGA
1 GTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATC-CATCTTCCTGGTGAGGTACAGAGA
* * * * * * * *
25851917 AGTGAGTTAGAACCGGTAATAGATCTCCACATCCCTAAGATTACAATGGAGTGGAGTGA
65 AGTGAGTTAAAACAGGTAACAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGA
25851976 GACTTCAAAT
Statistics
Matches: 1345, Mismatches: 251, Indels: 61
0.81 0.15 0.04
Matches are distributed among these distances:
186 297 0.22
187 240 0.18
188 150 0.11
189 649 0.48
190 9 0.01
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (188 bp):
GTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCATCTTCCTGGTGAGGTACAGAGAA
GTGAGTTAAAACAGGTAACAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCA
GAATCCTATACCCCTGAGTTGTAGTGGGTCGAATGAAAATAATGAAGTAGAGCTCAAC
Found at i:25852489 original size:187 final size:185
Alignment explanation
Indices: 25851945--25853051 Score: 996
Period size: 187 Copynumber: 5.8 Consensus size: 185
25851935 ATAGATCTCC
* * * * *
25851945 ACATCCCTAAGATTACAATGGAGTGGAGTGAGACTTCAAATCCTATCTTCTTAGTGAGGTACAGA
1 ACATCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGA
* * * * * *
25852010 GAAGTGGGTCAAAACAAAGCGGATCTCAATGTCCTTAAGGTTACAGTGAAGTGGAGTGAAGCACT
66 GAAGTAGGT-TAAA-AAAGTGGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACC
* * * *
25852075 AGAATCCTATACCCTTGAGTTGCAATGGGTCAGATAAAAATAATGAAGCAGAGCTCA
129 AGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCA
* * * * *
25852132 ACGTCCCTGAGGTTATAGAGGAGTGGAGTGGAGTGAGACTTCAAATCCAATCTTCTTGGTGAGGT
1 ACATCCCTAAGG-T-T--A-CAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGT
* ** * * * *
25852197 ACATAGAAGTAGGTTAAAATGGGTAGCATATCTCAAAGTCCTTGAGGTTACAGTAGAGTGTAGTG
61 ACAGAGAAGTAGGTTAAAA-AAGT-G--GATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTG
* * * * * *
25852262 AAGAACTAGAATCCTATATCCTTGAATTACAGTGGGTCGGATGAAAATAATGAAGTAGAGCTTA
122 AAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCA
* * *
25852326 ACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTTAAATCCCATCTTCCTGGTGAGGTACAAA
1 ACATCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGA
* * * * *
25852391 GAAGTGGGTCTAAACAAAATGGATCTCAATGACCTTGAGGTTACAATGGAATGGAGTGAAGCACC
66 GAAGTAGGT-TAAA-AAAGTGGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACC
* * * * *
25852456 AGAATGCTATACGCTTGAGTTACAGTGGGTCGGAT-AAAATTAATGAAGCATAGTTAA
129 AGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAA-TAATGAAGCAGAGCTCA
* * * * *
25852513 ACGA-CCCTAAGGTTACAGTAGAATGGAGTGGGACTTCAAATCCCATCTTGCTGGTGAGGTATAG
1 AC-ATCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAG
* * * *
25852577 AGAAGTAGATTAAAATAGGTAGCAAATCTCAATGTCCTTGAGGTTACAGTGGAGTAGAGTGAAGC
65 AGAAGTAGGTTAAAA-AAGT-G--GATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGC
* * * *
25852642 ATCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATG-AAGTAATAAAGTAGAGCTCA
126 ACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCA
* * *
25852701 ACGTGCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATC-TCCTTGGTAAGGTACAG
1 ACATCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCC-TGGTGAGGTACAG
* * * *
25852765 AGAAAT-GGTTAAAATAAAATAGATCTCAACGT-CTCTGAGGTTACAGTGGAGTGGAGTGAAGCA
65 AGAAGTAGGTT-AAA-AAAGTGGATCTCAATGTCCT-TGAGGTTACAGTGGAGTGGAGTGAAGCA
* ** * *
25852828 CCA-AATCCTATACCCCTTACCCCCTTAGTTGTAGTGGGTCGGATTAAAATAATGAAGCAGATCT
127 CCAGAATCCTATA-CCC-T------TGAGTTACAGTGGGTCGGATGAAAATAATGAAGCAGAGCT
25852892 CA
184 CA
* * * * *** *
25852894 ACATCCCTGAGGTTACCGTGGAGTGGAGTGAAACTTCAAAACTTGTCTTCC---TAAGGTTACAG
1 ACATCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGG-TACAG
* * * * * * * *
25852956 TGAAATGGGTCAAAACAGGTGGCAGATCTCAACGCCCCTGAGGTTACAGTGGAGTGGAGTGAAGC
65 AGAAGTAGGTTAAAA-AAGT-G--GATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGC
*
25853021 ATCAG-ATCCTATATCCC-TGAAGTTACAGTGG
126 ACCAGAATCCTATA-CCCTTG-AGTTACAGTGG
25853052 ATCTGATCCA
Statistics
Matches: 751, Mismatches: 127, Indels: 84
0.78 0.13 0.09
Matches are distributed among these distances:
184 11 0.01
185 42 0.06
186 12 0.02
187 165 0.22
188 76 0.10
189 129 0.17
190 13 0.02
191 21 0.03
192 75 0.10
193 55 0.07
194 151 0.20
195 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (185 bp):
ACATCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGA
GAAGTAGGTTAAAAAAGTGGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAG
AATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCA
Found at i:25852918 original size:376 final size:372
Alignment explanation
Indices: 25851936--25852921 Score: 1107
Period size: 381 Copynumber: 2.6 Consensus size: 372
25851926 GAACCGGTAA
* * * * * * *
25851936 TAGATCTCCACATCCCTAAGATTACAATGGAGTGGAGTGAGACTTCAAATCCTATCTTCTTAGTG
1 TAGAGCTCAACATCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTCCTTGGTG
* ** * *
25852001 AGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTCAATGTCCTTAAGGTTACAGTGAAGTGGAG
66 AGGTACAGAGAAGTGGGTTAAAACAAAATGGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAG
* * * * *
25852066 TGAAGCACTAGAATCCTATACCCTTGAGTTGCAATGGGTCAGATAAAAATAATGAAGCAGAGCTC
131 TGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATTAAAATAATGAAGCAGATCTC
* *
25852131 AACGTCCCTGAGGTTATAGAGGAGTGGAGTGGAGTGAGACTTCAAATCCAATCTTCTTGGTGAGG
196 AACATCCCTGAGG-T-T--A-CAGTGGAGT---G-GAGACTTCAAATCCAATCTTCTTGGTGAGG
* * * *
25852196 TACATAGAAGTAGGTTAAAATGGGTAGCATATCTCAAAGTCCTTGAGGTTACAGTAGAGTGTAGT
252 TACAGAGAAGTAGATTAAAATAGGTAGCAAATCTCAAAGTCCTTGAGGTTACAGTAGAGTGTAGT
* *
25852261 GAAGAACTAGAATCCTATATCCTTGAATTACAGTGGGTCGGATGAAAATAATGAAG
317 GAAGAACTAGAATCCTATACCCTTGAATTACAGTGGGTCGGATGAAAATAATAAAG
* * *
25852317 TAGAGCTTAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTTAAATCCCATCTTCC-TGGT
1 TAGAGCTCAACATCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATC-TCCTTGGT
* * * *
25852381 GAGGTACAAAGAAGTGGGTCT-AAACAAAATGGATCTCAATGACCTTGAGGTTACAATGGAATGG
65 GAGGTACAGAGAAGTGGGT-TAAAACAAAATGGATCTCAATGTCCTTGAGGTTACAGTGGAGTGG
* * * *
25852445 AGTGAAGCACCAGAATGCTATACGCTTGAGTTACAGTGGGTCGGA-TAAAATTAATGAAGCATAG
129 AGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATTAAAA-TAATGAAGCAGA-
* * *
25852509 T-TAAACGA-CCCTAAGGTTACAGTAGAATGGAGTGG-GACTTCAAATCCCATCTTGC-TGGTGA
192 TCTCAAC-ATCCCTGAGGTTAC---AG--TGGAGTGGAGACTTCAAATCCAATCTT-CTTGGTGA
* * *
25852570 GGTATAGAGAAGTAGATTAAAATAGGTAGCAAATCTCAATGTCCTTGAGGTTACAGTGGAGTAG-
250 GGTACAGAGAAGTAGATTAAAATAGGTAGCAAATCTCAAAGTCCTTGAGGTTACAGTAGAGT-GT
* * *
25852634 AGTGAAGCA-TCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATG-AAGTAATAAAG
314 AGTGAAGAACT-AGAATCCTATACCCTTGAATTACAGTGGGTCGGATGAAAATAATAAAG
* * *
25852692 TAGAGCTCAACGTGCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTCCTTGGTA
1 TAGAGCTCAACATCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTCCTTGGTG
* * * *
25852757 AGGTACAGAGAAAT-GGTTAAAATAAAATAGATCTCAACGT-CTCTGAGGTTACAGTGGAGTGGA
66 AGGTACAGAGAAGTGGGTTAAAACAAAATGGATCTCAATGTCCT-TGAGGTTACAGTGGAGTGGA
* *
25852820 GTGAAGCACCA-AATCCTATACCCCTTACCCCCTTAGTTGTAGTGGGTCGGATTAAAATAATGAA
130 GTGAAGCACCAGAATCCTATA-CCC-T------TGAGTTGCAGTGGGTCGGATTAAAATAATGAA
*
25852884 GCAGATCTCAACATCCCTGAGGTTACCGTGGAGTGGAG
187 GCAGATCTCAACATCCCTGAGGTTACAGTGGAGTGGAG
25852922 TGAAACTTCA
Statistics
Matches: 509, Mismatches: 68, Indels: 60
0.80 0.11 0.09
Matches are distributed among these distances:
373 11 0.02
374 54 0.11
375 78 0.15
376 128 0.25
377 5 0.01
378 2 0.00
379 3 0.01
380 7 0.01
381 214 0.42
382 7 0.01
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (372 bp):
TAGAGCTCAACATCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTCCTTGGTG
AGGTACAGAGAAGTGGGTTAAAACAAAATGGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAG
TGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATTAAAATAATGAAGCAGATCTC
AACATCCCTGAGGTTACAGTGGAGTGGAGACTTCAAATCCAATCTTCTTGGTGAGGTACAGAGAA
GTAGATTAAAATAGGTAGCAAATCTCAAAGTCCTTGAGGTTACAGTAGAGTGTAGTGAAGAACTA
GAATCCTATACCCTTGAATTACAGTGGGTCGGATGAAAATAATAAAG
Found at i:25852986 original size:568 final size:563
Alignment explanation
Indices: 25851949--25853051 Score: 1230
Period size: 568 Copynumber: 1.9 Consensus size: 563
25851939 ATCTCCACAT
* * *
25851949 CCCTAAGATTACAATGGAGTGGAGTGAGACTTCAAATCCTATCTTCTTAGTGAGGTACAGAGAAG
1 CCCTAAGATTACAATAGAATGGAGTGAGACTTCAAATCCCATCTTCTTAGTGAGGTACAGAGAAG
* * ** *
25852014 TGGGTCAAAACAAAGCGGATCTCAATGTCCTTAAGGTTACAGTGAAGTGGAGTGAAGCACTAGAA
66 TAGATCAAAACAAAGCAAATCTCAATGTCCTTAAGGTTACAGTGAAGTAGAGTGAAGCACTAGAA
* * *
25852079 TCCTATACCCTTGAGTTGCAATGGGTCAGATAAAAATAATGAAGCAGAGCTCAACGTCCCTGAGG
131 TCCTATACCCTTGAGTTACAATGGGTCAGATAAAAATAATAAAGCAGAGCTCAACGTCCCTAAGG
* * * * *
25852144 TTATAGAGGAGTGGAGTGGAGTGAGACTTCAAATCCAATCTTCTTGGTGAGGTACATAGAAGTAG
196 TTATA-AGCAGTGGAGTGGAGTGAGACTTCAAATCCAATCTCCTTGGTAAGGTACAGAGAAATAG
*** * *
25852209 GTTAAAATGGGTAGCATATCTCAAAGTCCTTGAGGTTACAGTAGAGTGTAGTGAAGAACTAGAAT
260 GTTAAAATAAATAG-A-ATCTCAAAGTCCTTGAGGTTACAGTAGAGTGGAGTGAAGAACCAGAAT
* *
25852274 CCTATATCCTTGAATTACAGTGGGTCGGATGAAAATAATGAAGTAGAGCTTAACATCCCTGAGGT
323 CCTATATCCTTGAATTACAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAACATCCCTGAGGT
* * * * * *
25852339 TACAGTGGAGTGGAGTGAGACTTTAAATCCCATCTTCCTGGTGAGGTACAAAGAAGTGGGTCTAA
388 TACAGTGGAGTGGAGTGAAACTTCAAAACCCATCTTCC--GTAAGGTACAAAGAAATGGGTCAAA
* * *
25852404 ACAAAATGGATCTCAATGACCTTGAGGTTACAATGGAATGGAGTGAAGCACCAGAATGCTATA-C
451 ACAAAATGGATCTCAACGACCCTGAGGTTACAATGGAATGGAGTGAAGCACCAG-ATCCTATATC
*
25852468 GCTTG-AGTTACAGTGGGTCGGATAAAATTAATGAAGCATAGTTAAACGA
515 -CCTGAAGTTACAGTGGGTCGGATAAAATTAATGAAGCATAGTTAAACGA
* * * * *
25852517 CCCTAAGGTTACAGTAGAATGGAGTGGGACTTCAAATCCCATCTTGC-TGGTGAGGTATAGAGAA
1 CCCTAAGATTACAATAGAATGGAGTGAGACTTCAAATCCCATCTT-CTTAGTGAGGTACAGAGAA
* * * * *
25852581 GTAGATTAAAATAGGTAGCAAATCTCAATGTCCTTGAGGTTACAGTGGAGTAGAGTGAAGCA-TC
65 GTAGATCAAAACA--AAGCAAATCTCAATGTCCTTAAGGTTACAGTGAAGTAGAGTGAAGCACT-
* * * * * *
25852645 AGAATCCTATACCCTTGAGTTACAGTGGGTCGGAT-GAAGTAATAAAGTAGAGCTCAACGTGCCT
127 AGAATCCTATACCCTTGAGTTACAATGGGTCAGATAAAAATAATAAAGCAGAGCTCAACGTCCCT
*
25852709 AAGG-T-T-A-CAGTGGAGTGGAGTGAGACTTCAAATCCCATCTCCTTGGTAAGGTACAGAGAAA
192 AAGGTTATAAGCAGTGGAGTGGAGTGAGACTTCAAATCCAATCTCCTTGGTAAGGTACAGAGAAA
* * *
25852770 T-GGTTAAAATAAAATAG-ATCTCAACGT-CTCTGAGGTTACAGTGGAGTGGAGTGAAGCACCA-
257 TAGGTTAAAAT-AAATAGAATCTCAAAGTCCT-TGAGGTTACAGTAGAGTGGAGTGAAGAACCAG
* ** * *
25852831 AATCCTATACCCCTTACCCCCTT-AGTTGTAGTGGGTCGGATTAAAATAATGAAGCAGATCTCAA
320 AATCCTATA-----T----CCTTGAATTACAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAA
* *** **
25852895 CATCCCTGAGGTTACCGTGGAGTGGAGTGAAACTTCAAAACTTGTCTTCC-TAAGGTTACAGTGA
376 CATCCCTGAGGTTACAGTGGAGTGGAGTGAAACTTCAAAACCCATCTTCCGTAAGG-TACAAAGA
** * * * *
25852959 AATGGGTCAAAAC-AGGTGGCAGATCTCAACGCCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAT
440 AATGGGTCAAAACAAAAT-G--GATCTCAACGACCCTGAGGTTACAATGGAATGGAGTGAAGCAC
25853023 CAGATCCTATATCCCTGAAGTTACAGTGG
502 CAGATCCTATATCCCTGAAGTTACAGTGG
25853052 ATCTGATCCA
Statistics
Matches: 444, Mismatches: 70, Indels: 42
0.80 0.13 0.08
Matches are distributed among these distances:
560 11 0.02
561 36 0.08
563 9 0.02
564 52 0.12
565 8 0.02
566 18 0.04
567 11 0.02
568 193 0.43
569 33 0.07
570 73 0.16
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (563 bp):
CCCTAAGATTACAATAGAATGGAGTGAGACTTCAAATCCCATCTTCTTAGTGAGGTACAGAGAAG
TAGATCAAAACAAAGCAAATCTCAATGTCCTTAAGGTTACAGTGAAGTAGAGTGAAGCACTAGAA
TCCTATACCCTTGAGTTACAATGGGTCAGATAAAAATAATAAAGCAGAGCTCAACGTCCCTAAGG
TTATAAGCAGTGGAGTGGAGTGAGACTTCAAATCCAATCTCCTTGGTAAGGTACAGAGAAATAGG
TTAAAATAAATAGAATCTCAAAGTCCTTGAGGTTACAGTAGAGTGGAGTGAAGAACCAGAATCCT
ATATCCTTGAATTACAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAACATCCCTGAGGTTAC
AGTGGAGTGGAGTGAAACTTCAAAACCCATCTTCCGTAAGGTACAAAGAAATGGGTCAAAACAAA
ATGGATCTCAACGACCCTGAGGTTACAATGGAATGGAGTGAAGCACCAGATCCTATATCCCTGAA
GTTACAGTGGGTCGGATAAAATTAATGAAGCATAGTTAAACGA
Found at i:25853217 original size:42 final size:42
Alignment explanation
Indices: 25853164--25853620 Score: 466
Period size: 42 Copynumber: 11.3 Consensus size: 42
25853154 CAGGTTGAAG
*
25853164 TCATCCAATCTCTTACCTCGACCATGAGGAAGATTGAAGACA
1 TCATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGACA
* * *
25853206 TTATCCAATCTCTTACCCTGACCAT-AGGGTAGATTGAAG-C-
1 TCATCCAATCTCTTACCCCGACCATGA-GGAAGATTGAAGACA
* * *
25853246 -CATCCAATCTCTTACCCCGACCATGAGGCAGATTAAAGATA
1 TCATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGACA
* *
25853287 TTATCCAATCTCTTACCTCGACCATGA-GACAGATTGAAG-C-
1 TCATCCAATCTCTTACCCCGACCATGAGGA-AGATTGAAGACA
* * *
25853327 -CATCCAGTCTCTTACCCCGACAATGAGGCAGATTGAAGACA
1 TCATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGACA
** * * * **
25853368 TCATCCAATCTCTTACCCTAACCATGGGGATGATTAAAGTGA
1 TCATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGACA
* * *
25853410 TCATCCAATCTCTTACCTCGACCATGGGGCAGATTGAAG-C-
1 TCATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGACA
* * *
25853450 -CAT-CAATCTCTTACCCCGACCATGGGGCAGATTAAAGACA
1 TCATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGACA
*
25853490 TCATCCAATCTCTTACCCCAACCATGAGGCAA-ATTGAAG---
1 TCATCCAATCTCTTACCCCGACCATGAGG-AAGATTGAAGACA
* * *
25853529 TCATCCAATCTCTTACCCCGATCATGAGAAAGGTTGAAGACA
1 TCATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGACA
* * *
25853571 TCAGCCAATCTCTTACCCCGACCATGAGGCAGATCGAAG-C-
1 TCATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGACA
25853611 -CATCCAATCT
1 TCATCCAATCT
25853621 TTCGCCCCTA
Statistics
Matches: 343, Mismatches: 53, Indels: 41
0.78 0.12 0.09
Matches are distributed among these distances:
38 34 0.10
39 108 0.31
40 3 0.01
41 7 0.02
42 190 0.55
43 1 0.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (42 bp):
TCATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGACA
Found at i:25853267 original size:81 final size:81
Alignment explanation
Indices: 25853151--25853620 Score: 473
Period size: 81 Copynumber: 5.8 Consensus size: 81
25853141 AAGTCAAGAG
* * * * *
25853151 GGGCAGGTTGAAG-TCATCCAATCTCTTACCTCGACCATGAGGAAGATTGAAGACATTATCCAAT
1 GGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCAGATTGAAGACATCATCCAAT
25853215 CTCTTACCCTGACCAT
66 CTCTTACCCTGACCAT
* * * *
25853231 AGGGTAGATTGAAG-CCATCCAATCTCTTACCCCGACCATGAGGCAGATTAAAGATATTATCCAA
1 -GGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCAGATTGAAGACATCATCCAA
25853295 TCTCTTA-CCTCGACCAT
65 TCTCTTACCCT-GACCAT
* * *
25853312 GAGACAGATTGAAG-CCATCCAGTCTCTTACCCCGACAATGAGGCAGATTGAAGACATCATCCAA
1 G-GGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCAGATTGAAGACATCATCCAA
*
25853376 TCTCTTACCCTAACCAT
65 TCTCTTACCCTGACCAT
* * * * *
25853393 GGGGATGATTAAAGTGATCATCCAATCTCTTACCTCGACCATGGGGCAGATTGAAG-C--CAT-C
1 GGGCA-GATTGAA--GACCATCCAATCTCTTACCCCGACCATGAGGCAGATTGAAGACATCATCC
*
25853454 AATCTCTTACCCCGACCAT
63 AATCTCTTACCCTGACCAT
* * *
25853473 GGGGCAGATTAAAGACATCATCCAATCTCTTACCCCAACCATGAGGCAAATTGAAG---TCATCC
1 -GGGCAGATTGAAGAC--CATCCAATCTCTTACCCCGACCATGAGGCAGATTGAAGACATCATCC
* *
25853535 AATCTCTTACCCCGATCAT
63 AATCTCTTACCCTGACCAT
** * * *
25853554 GAGAAAGGTTGAAGACATCAGCCAATCTCTTACCCCGACCATGAGGCAGATCGAAG-C--CATCC
1 G-GGCAGATTGAAGAC--CATCCAATCTCTTACCCCGACCATGAGGCAGATTGAAGACATCATCC
25853616 AATCT
63 AATCT
25853621 TTCGCCCCTA
Statistics
Matches: 335, Mismatches: 40, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
80 69 0.21
81 225 0.67
82 3 0.01
83 2 0.01
84 34 0.10
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.24
Consensus pattern (81 bp):
GGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCAGATTGAAGACATCATCCAAT
CTCTTACCCTGACCAT
Found at i:25853373 original size:123 final size:121
Alignment explanation
Indices: 25853164--25853620 Score: 538
Period size: 123 Copynumber: 3.8 Consensus size: 121
25853154 CAGGTTGAAG
* *
25853164 TCATCCAATCTCTTACCTCGACCATGAGGA-AGATTGAAGACATTATCCAATCTCTTACCCTGAC
1 TCATCCAATCTCTTACCTCGACCATGA-GACAGATTGAAGACA-CATCCAATCTCTTACCCCGAC
* *
25853228 CAT-AGGGTAGATTGAAGCCATCCAATCTCTTACCCCGACCATGAGGCAGATTAAAGATA
64 CATGA-GGCAGATTGAAGCCATCCAATCTCTTACCCCAACCATGAGGCAGATTAAAG-TA
* * *
25853287 TTATCCAATCTCTTACCTCGACCATGAGACAGATTGAAG-C-CATCCAGTCTCTTACCCCGACAA
1 TCATCCAATCTCTTACCTCGACCATGAGACAGATTGAAGACACATCCAATCTCTTACCCCGACCA
* *
25853350 TGAGGCAGATTGAAGACATCATCCAATCTCTTACCCTAACCATG-GGGATGATTAAAGTGA
66 TGAGGCAGATTGAAG-C--CATCCAATCTCTTACCCCAACCATGAGGCA-GATTAAAGT-A
* *
25853410 TCATCCAATCTCTTACCTCGACCATGGGGCAGATTGAAG-C-CAT-CAATCTCTTACCCCGACCA
1 TCATCCAATCTCTTACCTCGACCATGAGACAGATTGAAGACACATCCAATCTCTTACCCCGACCA
* * * *
25853472 TGGGGCAGATTAAAGACATCATCCAATCTCTTACCCCAACCATGAGGCAAATTGAAG--
66 TGAGGCAGATTGAAG-C--CATCCAATCTCTTACCCCAACCATGAGGCAGATTAAAGTA
* * * * *
25853529 TCATCCAATCTCTTACCCCGATCATGAGAAAGGTTGAAGACATCAGCCAATCTCTTACCCCGACC
1 TCATCCAATCTCTTACCTCGACCATGAGACAGATTGAAGACA-CATCCAATCTCTTACCCCGACC
*
25853594 ATGAGGCAGATCGAAGCCATCCAATCT
65 ATGAGGCAGATTGAAGCCATCCAATCT
25853621 TTCGCCCCTA
Statistics
Matches: 292, Mismatches: 30, Indels: 27
0.84 0.09 0.08
Matches are distributed among these distances:
119 33 0.11
120 42 0.14
121 2 0.01
122 74 0.25
123 141 0.48
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (121 bp):
TCATCCAATCTCTTACCTCGACCATGAGACAGATTGAAGACACATCCAATCTCTTACCCCGACCA
TGAGGCAGATTGAAGCCATCCAATCTCTTACCCCAACCATGAGGCAGATTAAAGTA
Found at i:25853647 original size:203 final size:203
Alignment explanation
Indices: 25853208--25853620 Score: 539
Period size: 203 Copynumber: 2.0 Consensus size: 203
25853198 TGAAGACATT
** * *
25853208 ATCCAATCTCTTACCCTGACCATAGGGTAGATTGAAGCCATCCAATCTCTTACCCCGACCATGAG
1 ATCCAATCTCTTACCCCAACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGAG
* * * * * *
25853273 GCAGATTAAAGATATTATCCAATCTCTTACCTCGACCATGAGACAGATTGAAGCCATCCAGTCTC
66 GCAGATTAAAGACATCATCCAATCTCTTACCCCAACCATGAGACAAATTGAAGCCATCCAATCTC
** * * * *
25853338 TTACCCCGACAATGAGGCAGATTGAAGACATCATCCAATCTCTTACCCTAACCATGGGGATGATT
131 TTACCCCGACAATGAGAAAGATTGAAGACATCAGCCAATCTCTTACCCCAACCATGGGCATGATC
*
25853403 AAAGTGATC
196 AAAG-GACC
* * *
25853412 ATCCAATCTCTTACCTCGACCATGGGGCAGATTGAAGCCAT-CAATCTCTTACCCCGACCATGGG
1 ATCCAATCTCTTACCCCAACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGAG
* *
25853476 GCAGATTAAAGACATCATCCAATCTCTTACCCCAACCATGAGGCAAATTGAAGTCATCCAATCTC
66 GCAGATTAAAGACATCATCCAATCTCTTACCCCAACCATGAGACAAATTGAAGCCATCCAATCTC
* *
25853541 TTACCCCGATC-ATGAGAAAGGTTGAAGACATCAGCCAATCTCTTACCCCGACCATGAGGCA-GA
131 TTACCCCGA-CAATGAGAAAGATTGAAGACATCAGCCAATCTCTTACCCCAACCATG-GGCATGA
*
25853604 TCGAA-G-CC
194 TCAAAGGACC
25853612 ATCCAATCT
1 ATCCAATCT
25853621 TTCGCCCCTA
Statistics
Matches: 184, Mismatches: 23, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
200 10 0.05
201 1 0.01
203 132 0.72
204 41 0.22
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (203 bp):
ATCCAATCTCTTACCCCAACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGAG
GCAGATTAAAGACATCATCCAATCTCTTACCCCAACCATGAGACAAATTGAAGCCATCCAATCTC
TTACCCCGACAATGAGAAAGATTGAAGACATCAGCCAATCTCTTACCCCAACCATGGGCATGATC
AAAGGACC
Found at i:25854213 original size:18 final size:17
Alignment explanation
Indices: 25854181--25854214 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25854171 ATTACCCTAA
25854181 AAACCCAAACCCAAATT
1 AAACCCAAACCCAAATT
*
25854198 AAACCTAAAGCCCAAAT
1 AAACCCAAA-CCCAAAT
25854215 GGCCCAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.53, C:0.32, G:0.03, T:0.12
Consensus pattern (17 bp):
AAACCCAAACCCAAATT
Found at i:25857886 original size:70 final size:71
Alignment explanation
Indices: 25857773--25857912 Score: 169
Period size: 70 Copynumber: 2.0 Consensus size: 71
25857763 GATGGCTACC
* * *
25857773 AGAAGATAGAGATATAGATGTGATTAACAAGACTGCTAGTACATCGGACTAGA-CCAAGAAGAAT
1 AGAAGATAGAGATATAGATGTGATGAACAAGACTGCTAATACATCAGACTAGACCCAAGAAGAAT
25857837 AGATCT
66 AGATCT
*** * *
25857843 AGAAGATAGAGATATAGATGTGACTGAGTGA-ACTGAC-AATACATTAGACTAGACCCAGGAAGA
1 AGAAGATAGAGATATAGATGTGA-TGAACAAGACTG-CTAATACATCAGACTAGACCCAAGAAGA
25857906 ATAGATC
64 ATAGATC
25857913 CTGAATCCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
70 40 0.68
71 19 0.32
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.21
Consensus pattern (71 bp):
AGAAGATAGAGATATAGATGTGATGAACAAGACTGCTAATACATCAGACTAGACCCAAGAAGAAT
AGATCT
Found at i:25860130 original size:19 final size:20
Alignment explanation
Indices: 25860088--25860131 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
25860078 AACTTAAAGG
25860088 CCCAATTTGTGAACACAATA
1 CCCAATTTGTGAACACAATA
* *
25860108 CCCAATTTGT-AACCCACTA
1 CCCAATTTGTGAACACAATA
25860127 CCCAA
1 CCCAA
25860132 CCCAAACCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.36, C:0.34, G:0.07, T:0.23
Consensus pattern (20 bp):
CCCAATTTGTGAACACAATA
Found at i:25865275 original size:28 final size:27
Alignment explanation
Indices: 25865243--25865299 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 27
25865233 GGTTGACTTA
25865243 TGAAC-ACTTTAC-GACAAAGTGAAAATTG
1 TGAACAAC-TTACTGAC-AAGTG-AAATTG
25865271 TGAACGAACTTACTGACAAGTGAAATTG
1 TGAAC-AACTTACTGACAAGTGAAATTG
25865299 T
1 T
25865300 CCCTAAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
28 12 0.46
29 9 0.35
30 5 0.19
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.26
Consensus pattern (27 bp):
TGAACAACTTACTGACAAGTGAAATTG
Found at i:25869023 original size:25 final size:25
Alignment explanation
Indices: 25868989--25869038 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
25868979 TCTTGTAACA
25868989 ATATTTCTTTGTACTAACAAACTAC
1 ATATTTCTTTGTACTAACAAACTAC
* *
25869014 ATATTTCTTTGTACTAGCAAGCTAC
1 ATATTTCTTTGTACTAACAAACTAC
25869039 CGAGGAGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (25 bp):
ATATTTCTTTGTACTAACAAACTAC
Found at i:25871293 original size:2 final size:2
Alignment explanation
Indices: 25871288--25871334 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
25871278 AAACAAAAAA
25871288 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25871330 AT AT A
1 AT AT A
25871335 CTAATACAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:25871862 original size:29 final size:26
Alignment explanation
Indices: 25871830--25871890 Score: 68
Period size: 29 Copynumber: 2.2 Consensus size: 26
25871820 TTATCTATTG
* *
25871830 TTATTTTATGTGATTTGAATATTTTGTAT
1 TTATTTAATGTCA-TTG-ATATTTT-TAT
*
25871859 TTATTTAATTTCATTGATATTTTTAT
1 TTATTTAATGTCATTGATATTTTTAT
25871885 TTATTT
1 TTATTT
25871891 GCATGATACA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 9 0.31
27 7 0.24
28 3 0.10
29 10 0.34
ACGTcount: A:0.25, C:0.02, G:0.08, T:0.66
Consensus pattern (26 bp):
TTATTTAATGTCATTGATATTTTTAT
Found at i:25871904 original size:22 final size:22
Alignment explanation
Indices: 25871858--25871904 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
25871848 ATATTTTGTA
*
25871858 TTTATTTAATTTCATTGATATT
1 TTTATTTAATTTCATTGATAAT
25871880 TTTATTT-ATTTGCA-TGATACAT
1 TTTATTTAATTT-CATTGATA-AT
25871902 TTT
1 TTT
25871905 CTTAAATTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (22 bp):
TTTATTTAATTTCATTGATAAT
Found at i:25872032 original size:20 final size:19
Alignment explanation
Indices: 25872007--25872044 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
25871997 TAATTAATTA
*
25872007 ATATTATTGTCATTATTATG
1 ATATTATTATCA-TATTATG
25872027 ATATTATTATCATATTAT
1 ATATTATTATCATATTAT
25872045 TTGTTACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (19 bp):
ATATTATTATCATATTATG
Found at i:25872949 original size:19 final size:19
Alignment explanation
Indices: 25872922--25872959 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
25872912 ATTTGATTTT
25872922 ATCAATTTGATCAACTTAA
1 ATCAATTTGATCAACTTAA
* *
25872941 ATCAGTTTGTTCAACTTAA
1 ATCAATTTGATCAACTTAA
25872960 CTTTTATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (19 bp):
ATCAATTTGATCAACTTAA
Found at i:25874433 original size:33 final size:33
Alignment explanation
Indices: 25874340--25874433 Score: 76
Period size: 33 Copynumber: 3.0 Consensus size: 33
25874330 ATACAAATAT
*
25874340 AAACAAAAATAGAATCAAAAGAATTTATATATTCA
1 AAACAAAAATAGAATAAAAAGAA-TT-TATATTCA
* * * *
25874375 TATC--TAAT-G-A-AAAAA-AA-TTACATTCA
1 AAACAAAAATAGAATAAAAAGAATTTATATTCA
25874401 AAACAAAAATAGAATAAAAAGAATTTATATTCA
1 AAACAAAAATAGAATAAAAAGAATTTATATTCA
25874434 TATCTGATGA
Statistics
Matches: 43, Mismatches: 9, Indels: 16
0.63 0.13 0.24
Matches are distributed among these distances:
26 9 0.21
27 1 0.02
28 3 0.07
29 3 0.07
30 5 0.12
31 6 0.14
32 3 0.07
33 11 0.26
35 2 0.05
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.27
Consensus pattern (33 bp):
AAACAAAAATAGAATAAAAAGAATTTATATTCA
Found at i:25877165 original size:51 final size:49
Alignment explanation
Indices: 25877079--25877190 Score: 127
Period size: 51 Copynumber: 2.2 Consensus size: 49
25877069 GATATTTTGA
* * *
25877079 AAAAAAAATTTGTGTGTTCATGCTATGACCGACACCCCTTTTATCAAAT
1 AAAAAAAATTTGTGTGTTCATGCCATGACCCACACCCCCTTTATCAAAT
* **
25877128 AAAAAAAATTTGGTGTCGCTT-ATGCCATGGCCCACACCCCCTTTATCTGAT
1 AAAAAAAATTT-GTGT-G-TTCATGCCATGACCCACACCCCCTTTATCAAAT
25877179 AAAAAAATATTT
1 AAAAAAA-ATTT
25877191 TTTTTAGTGT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
49 11 0.21
50 4 0.08
51 32 0.60
52 6 0.11
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.31
Consensus pattern (49 bp):
AAAAAAAATTTGTGTGTTCATGCCATGACCCACACCCCCTTTATCAAAT
Found at i:25877228 original size:35 final size:36
Alignment explanation
Indices: 25877171--25877242 Score: 119
Period size: 35 Copynumber: 2.0 Consensus size: 36
25877161 ACACCCCCTT
*
25877171 TATCTGATAAAAAAATATTTTTTTTAGTGTCGCCCA
1 TATCTAATAAAAAAATATTTTTTTTAGTGTCGCCCA
*
25877207 TATCTAATAAAAAAATA-TTTTTTTGGTGTCGCCCA
1 TATCTAATAAAAAAATATTTTTTTTAGTGTCGCCCA
25877242 T
1 T
25877243 GCCATAACCG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
35 18 0.53
36 16 0.47
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (36 bp):
TATCTAATAAAAAAATATTTTTTTTAGTGTCGCCCA
Found at i:25877334 original size:57 final size:58
Alignment explanation
Indices: 25877214--25877371 Score: 214
Period size: 57 Copynumber: 2.8 Consensus size: 58
25877204 CCATATCTAA
*** *
25877214 TAAAAAAATATTTTTTT-GGTGTCGCCCATGCCATAACCGACACTCCTTTTATCTGAT
1 TAAAAAAATATTTTTTTGGGTGTCGCCCATGCCATGGTCGACACTCCCTTTATCTGAT
* * *
25877271 TAAAAAAATATTTTTTTGGGTGTTGCCCTTGCCATGGTCGACACTCCCCTTTATTTGA-
1 TAAAAAAATATTTTTTTGGGTGTCGCCCATGCCATGGTCGACACT-CCCTTTATCTGAT
*
25877329 T-AAAAAATATTTTTTTGGGTGTCGCCCATACCATGGTCGACAC
1 TAAAAAAATATTTTTTTGGGTGTCGCCCATGCCATGGTCGACAC
25877372 CCACGAATAA
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
57 56 0.63
58 23 0.26
59 10 0.11
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (58 bp):
TAAAAAAATATTTTTTTGGGTGTCGCCCATGCCATGGTCGACACTCCCTTTATCTGAT
Found at i:25878329 original size:39 final size:38
Alignment explanation
Indices: 25878286--25878378 Score: 105
Period size: 39 Copynumber: 2.4 Consensus size: 38
25878276 ATATAAATTT
* * *
25878286 TGAAAAAATAATAATTAGAAATTAAATTTAAAATATAAA
1 TGAAAAAACAA-AATTACAAATTAAATTTAAAAAATAAA
* *
25878325 TGAAATAGACGAAATTACAAATTAAATTTAAAAAATAAA
1 TGAAA-AAACAAAATTACAAATTAAATTTAAAAAATAAA
* *
25878364 CGAAAAATCAAAATT
1 TGAAAAAACAAAATT
25878379 GAGTAGATCT
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
38 7 0.16
39 34 0.77
40 3 0.07
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.27
Consensus pattern (38 bp):
TGAAAAAACAAAATTACAAATTAAATTTAAAAAATAAA
Found at i:25879473 original size:18 final size:18
Alignment explanation
Indices: 25879447--25879502 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
25879437 CTCATTTTGG
25879447 ATTTA-TTTTAAATTTAA
1 ATTTATTTTTAAATTTAA
*
25879464 ATTTATTTTTAAATTTGA
1 ATTTATTTTTAAATTTAA
* *
25879482 A-TT-TGTTAAAATTTAA
1 ATTTATTTTTAAATTTAA
25879498 ATTTA
1 ATTTA
25879503 AAATTATTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
16 11 0.34
17 9 0.28
18 12 0.38
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (18 bp):
ATTTATTTTTAAATTTAA
Found at i:25879547 original size:17 final size:16
Alignment explanation
Indices: 25879513--25879554 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
25879503 AAATTATTCT
25879513 AAAT-AAATAAAACTC
1 AAATAAAATAAAACTC
*
25879528 AAATAAAATAAAGTCTC
1 AAATAAAATAAA-ACTC
25879545 AAATTAAAAT
1 AAA-TAAAAT
25879555 TAGATGTCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 4 0.17
16 7 0.30
17 6 0.26
18 6 0.26
ACGTcount: A:0.64, C:0.10, G:0.02, T:0.24
Consensus pattern (16 bp):
AAATAAAATAAAACTC
Found at i:25882539 original size:37 final size:36
Alignment explanation
Indices: 25882496--25882568 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 36
25882486 ATTTTTTAAT
25882496 ATTTCGAAAATATAAAAAATATATGTAAAAAAAATTC
1 ATTTCGAAAATATAAAAAATA-ATGTAAAAAAAATTC
* * *
25882533 ATTTCGAATATATAAAAAATAATTTTAAAAAAATTC
1 ATTTCGAAAATATAAAAAATAATGTAAAAAAAATTC
25882569 GAAAAGCTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 13 0.39
37 20 0.61
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (36 bp):
ATTTCGAAAATATAAAAAATAATGTAAAAAAAATTC
Found at i:25882588 original size:51 final size:55
Alignment explanation
Indices: 25882524--25882626 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 55
25882514 ATATATGTAA
* * *
25882524 AAAAAATTCATTTCGAATATATAAAAAATA-ATTTTAAAAAA-A-TTCGAAAAGCT
1 AAAAAATTCATTTCAAAAATATAAAAAATAGA-TGTAAAAAATATTTCGAAAAGCT
25882577 AAAAAA-T-ATTTCAAAAATATAAAAAATAGATGTAAAAAATATTTCGAAAA
1 AAAAAATTCATTTCAAAAATATAAAAAATAGATGTAAAAAATATTTCGAAAA
25882627 TATAATTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
51 27 0.61
52 3 0.07
53 14 0.32
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (55 bp):
AAAAAATTCATTTCAAAAATATAAAAAATAGATGTAAAAAATATTTCGAAAAGCT
Found at i:25882593 original size:20 final size:19
Alignment explanation
Indices: 25882558--25882604 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
25882548 AAAATAATTT
* *
25882558 TAAAAAA-ATTCGAAAAGC
1 TAAAAAATATTCAAAAAGA
*
25882576 TAAAAAATATTTCAAAAATA
1 TAAAAAATA-TTCAAAAAGA
25882596 TAAAAAATA
1 TAAAAAATA
25882605 GATGTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 7 0.29
19 1 0.04
20 16 0.67
ACGTcount: A:0.66, C:0.06, G:0.04, T:0.23
Consensus pattern (19 bp):
TAAAAAATATTCAAAAAGA
Found at i:25882638 original size:77 final size:73
Alignment explanation
Indices: 25882546--25882703 Score: 217
Period size: 77 Copynumber: 2.1 Consensus size: 73
25882536 TCGAATATAT
* * * *
25882546 AAAAAATAATTTTAAAAAAATTCGAAAAGCTAAAAAATATTTCAAAAATATAAAAAATAGATGTA
1 AAAATATAATTTTAAAAAAATTCAAAAAGATAAAAAATATTTCAAAAATAGAAAAAA-AGATGTA
25882611 AAAAATATTTCG
65 AAAAA-A--TCG
* * *
25882623 AAAATATAATTTTAAAAAAATTCAAAAATATAAAAAATATTTCAAAAATAGAAAAAAATATTTAA
1 AAAATATAATTTTAAAAAAATTCAAAAAGATAAAAAATATTTCAAAAATAGAAAAAAAGATGTAA
25882688 AAAAATCG
66 AAAAATCG
25882696 AAAATATA
1 AAAATATA
25882704 TCTTACCCTA
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
73 11 0.15
75 1 0.01
76 10 0.14
77 52 0.70
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.27
Consensus pattern (73 bp):
AAAATATAATTTTAAAAAAATTCAAAAAGATAAAAAATATTTCAAAAATAGAAAAAAAGATGTAA
AAAAATCG
Found at i:25882678 original size:21 final size:20
Alignment explanation
Indices: 25882643--25882690 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
25882633 TTTAAAAAAA
*
25882643 TTCAAAAATATAAAAAATAT
1 TTCAAAAATAAAAAAAATAT
25882663 TTCAAAAATAGAAAAAAATAT
1 TTCAAAAATA-AAAAAAATAT
25882684 TT-AAAAA
1 TTCAAAAA
25882691 AATCGAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (20 bp):
TTCAAAAATAAAAAAAATAT
Found at i:25882689 original size:11 final size:11
Alignment explanation
Indices: 25882576--25882691 Score: 66
Period size: 11 Copynumber: 10.6 Consensus size: 11
25882566 TTCGAAAAGC
25882576 TAAAAAATATT
1 TAAAAAATATT
*
25882587 TCAAAAATA--
1 TAAAAAATATT
*
25882596 TAAAAAATAGATG
1 TAAAAAAT--ATT
25882609 TAAAAAATATT
1 TAAAAAATATT
*
25882620 TCGAAAATATAATTT
1 T--AAAAAAT-A-TT
25882635 TAAAAAA-A-T
1 TAAAAAATATT
*
25882644 TCAAAAATA--
1 TAAAAAATATT
25882653 TAAAAAATATT
1 TAAAAAATATT
* *
25882664 TCAAAAATA-G
1 TAAAAAATATT
*
25882674 AAAAAAATATT
1 TAAAAAATATT
25882685 TAAAAAA
1 TAAAAAA
25882692 ATCGAAAATA
Statistics
Matches: 80, Mismatches: 13, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
9 22 0.28
10 8 0.10
11 27 0.34
13 19 0.24
14 1 0.01
15 3 0.04
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.28
Consensus pattern (11 bp):
TAAAAAATATT
Found at i:25882699 original size:21 final size:21
Alignment explanation
Indices: 25882646--25882691 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
25882636 AAAAAAATTC
* *
25882646 AAAAATA-TAAAAAATATTTC
1 AAAAATAGAAAAAAATATTTA
25882666 AAAAATAGAAAAAAATATTTA
1 AAAAATAGAAAAAAATATTTA
25882687 AAAAA
1 AAAAA
25882692 ATCGAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (21 bp):
AAAAATAGAAAAAAATATTTA
Found at i:25884162 original size:12 final size:12
Alignment explanation
Indices: 25884136--25884178 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
25884126 TAATTATCAT
25884136 TTTTAAAT-T-A
1 TTTTAAATATAA
25884146 TTTTAAATATAA
1 TTTTAAATATAA
25884158 TTTTAAATATAGTA
1 TTTTAAATATA--A
25884172 TTTTAAA
1 TTTTAAA
25884179 AAACATTCGC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 8 0.28
11 1 0.03
12 12 0.41
14 8 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (12 bp):
TTTTAAATATAA
Found at i:25884269 original size:27 final size:27
Alignment explanation
Indices: 25884231--25884285 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
25884221 TAAAGTTTAT
*
25884231 TATTATTTATTTAAATTATTATTTAAC
1 TATTATTTATTTAAATAATTATTTAAC
*
25884258 TATT-TTTAATTTAAATAATTTTTTAAC
1 TATTATTT-ATTTAAATAATTATTTAAC
25884285 T
1 T
25884286 TGAATTTGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 22 0.88
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (27 bp):
TATTATTTATTTAAATAATTATTTAAC
Found at i:25884311 original size:243 final size:241
Alignment explanation
Indices: 25884015--25884552 Score: 861
Period size: 243 Copynumber: 2.2 Consensus size: 241
25884005 ATATTAGAAT
* * *
25884015 TATTTTTAATTAAAATAATTTTTTAATTTGAGTTTGATAAAAATTTGAAAAAGTTGAA-AAATTA
1 TATTTTTAATTTAAATAATTTTTTAATTTGAATTTGGTAAAAATTTGAAAAAGTT-AAGAAATTA
*
25884079 TTTATTGTCACATCAACACTTTAAAT-AGTTTTTTAATTATTTCAATTTAATTATCATTTTTAAA
65 TGTATTGTCACATCAACACTTTAAATGA-TTTTTTAATTATTTCAATTTAATTATCATTTTTAAA
* ** *
25884143 TTATTTTAAATATAATTTTAAATATAGTATTTTAAAAAACATTCGCAATATTTTTAATATATATT
129 TTATTTTAAATATAACTTTAAATATAGTATTTTAAAAAA-ATTCAAAATATTTGTAATATA-ATT
*
25884208 TTTTGTAATTTTTTAAAGTTTATTATTATTTATTTAAATTATTATTTAAC
192 TTTTGTAATTTTTTAAAATTTATTATTATTTATTTAAATTATTATTTAAC
* * *
25884258 TATTTTTAATTTAAATAATTTTTTAACTTGAATTTGGTAAAAGTTTTAAAAAG-TAAGTAAATTA
1 TATTTTTAATTTAAATAATTTTTTAATTTGAATTTGGTAAAAATTTGAAAAAGTTAAG-AAATTA
*
25884322 TGTATTGTCACATCAACACTTTAAATGATTTTTTAATTATTTGAATTTAATTATCATTTTTAAAT
65 TGTATTGTCACATCAACACTTTAAATGATTTTTTAATTATTTCAATTTAATTATCATTTTTAAAT
25884387 TATTTTAAATATAACTTTAAATATAGTATTTTAAAAAAATTCAAAATATTTGTAATATAATTTTT
130 TATTTTAAATATAACTTTAAATATAGTATTTTAAAAAAATTCAAAATATTTGTAATATAATTTTT
*
25884452 TGTAATTTTTTAAAATTTATTATTATTTATTTAAATTATTATTTAAT
195 TGTAATTTTTTAAAATTTATTATTATTTATTTAAATTATTATTTAAC
25884499 TATTTTTAATTTAAAT--TTTTTCTAATTTGAATTTGGTAAAAATTTGAAAAAGTT
1 TATTTTTAATTTAAATAATTTTT-TAATTTGAATTTGGTAAAAATTTGAAAAAGTT
25884553 TTGACATTGA
Statistics
Matches: 273, Mismatches: 17, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
239 5 0.02
240 27 0.10
241 70 0.26
242 19 0.07
243 151 0.55
244 1 0.00
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (241 bp):
TATTTTTAATTTAAATAATTTTTTAATTTGAATTTGGTAAAAATTTGAAAAAGTTAAGAAATTAT
GTATTGTCACATCAACACTTTAAATGATTTTTTAATTATTTCAATTTAATTATCATTTTTAAATT
ATTTTAAATATAACTTTAAATATAGTATTTTAAAAAAATTCAAAATATTTGTAATATAATTTTTT
GTAATTTTTTAAAATTTATTATTATTTATTTAAATTATTATTTAAC
Found at i:25884501 original size:20 final size:21
Alignment explanation
Indices: 25884454--25884503 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
25884444 TAATTTTTTG
*
25884454 TAATTTTTTAAAATTTATTAT
1 TAATTATTTAAAATTTATTAT
*
25884475 TATTTATTT-AAA-TTATTATT
1 TAATTATTTAAAATTTATTA-T
25884495 TAATTATTT
1 TAATTATTT
25884504 TTAATTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 6 0.24
20 12 0.48
21 7 0.28
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TAATTATTTAAAATTTATTAT
Found at i:25884724 original size:21 final size:23
Alignment explanation
Indices: 25884695--25884742 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
25884685 AATTAAATTT
25884695 TTTTAAAAATTTATTA-TATATA
1 TTTTAAAAATTTATTATTATATA
*
25884717 TTTT-AAAATTTATTATTATTTA
1 TTTTAAAAATTTATTATTATATA
25884739 TTTT
1 TTTT
25884743 TTAAAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTTAAAAATTTATTATTATATA
Found at i:25884754 original size:23 final size:23
Alignment explanation
Indices: 25884693--25884768 Score: 82
Period size: 24 Copynumber: 3.3 Consensus size: 23
25884683 AAAATTAAAT
* *
25884693 TTTTTTAAAA-ATTTATTATATA
1 TTTTTTAAAATAATTATTATTTA
* *
25884715 TATTTTAAAATTTATTATTATTTA
1 TTTTTTAAAA-TAATTATTATTTA
*
25884739 TTTTTTAAAATAATTATTTGTTTA
1 TTTTTTAAAATAATTA-TTATTTA
25884763 TTTTTT
1 TTTTTT
25884769 TACCATTGAG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
22 9 0.20
23 5 0.11
24 30 0.68
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (23 bp):
TTTTTTAAAATAATTATTATTTA
Found at i:25885088 original size:15 final size:15
Alignment explanation
Indices: 25885049--25885090 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
25885039 TCCTCTTAAG
25885049 TTTTTTAATATAAATA
1 TTTTTTAAT-TAAATA
25885065 TTATTTTAATTACAAT-
1 TT-TTTTAATTA-AATA
25885081 TTTTTTAATT
1 TTTTTTAATT
25885091 TTATTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.33
16 6 0.25
17 10 0.42
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTTTAATTAAATA
Found at i:25889618 original size:53 final size:52
Alignment explanation
Indices: 25889544--25889958 Score: 374
Period size: 53 Copynumber: 7.7 Consensus size: 52
25889534 TTGAAAAAGG
*
25889544 GTGTCGGCCATGGCATAGGCAACATCCAAAATTTTTTTTATCAGATAAAGGGA
1 GTGTCGGCCATGGCATGGGCAACA-CCAAAATTTTTTTTATCAGATAAAGGGA
* *
25889597 GTGTCGGCCATGACATGGGCAACACCCAAAAAAATATTTTTTTATCAGATAAAGGGG
1 GTGTCGGCCATGGCATGGGCAACA-CC---AAAAT-TTTTTTTATCAGATAAAGGGA
* * * *
25889654 GTGTCGACCATTGCATGAGCAACACTAAAAAAAAATATTTTTTTATCAGATAAAAGGG-
1 GTGTCGGCCATGGCATGGGCAACAC-----CAAAAT-TTTTTTTATCAGAT-AAAGGGA
* * * *
25889712 GTGTCGGCCATGGTATGGGCTACACCAAATTTTTTTTTTATCAAATAAAGAGGA
1 GTGTCGGCCATGGCATGGGCAACACCAAA-ATTTTTTTTATCAGATAAAG-GGA
* ** *
25889766 -TGTCGGTCATGGCATGGATG-ACACAAAAAAATATTTTTTATCAGATAAAGGGA
1 GTGTCGGCCATGGCATGG--GCA-ACACCAAAATTTTTTTTATCAGATAAAGGGA
* * *
25889819 GTGTCGGCCATGACATGGGCGACACCAAAATTTTTTTTATCAGATATATGGG-
1 GTGTCGGCCATGGCATGGGCAACACCAAAATTTTTTTTATCAGATA-AAGGGA
* * * * **
25889871 GTGTCGACCATGGCATGGGCGACA-CTAATTTTTTTTTATTTGATAAAGGGA
1 GTGTCGGCCATGGCATGGGCAACACCAAAATTTTTTTTATCAGATAAAGGGA
* * *
25889922 GTGTCAGCCATGGCATGGGCGACACC-AATTTTTTTTT
1 GTGTCGGCCATGGCATGGGCAACACCAAAATTTTTTTT
25889959 CCAAAATATC
Statistics
Matches: 300, Mismatches: 41, Indels: 44
0.78 0.11 0.11
Matches are distributed among these distances:
50 4 0.01
51 50 0.17
52 50 0.17
53 64 0.21
54 33 0.11
55 7 0.02
56 6 0.02
57 40 0.13
58 40 0.13
59 6 0.02
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (52 bp):
GTGTCGGCCATGGCATGGGCAACACCAAAATTTTTTTTATCAGATAAAGGGA
Found at i:25889658 original size:57 final size:54
Alignment explanation
Indices: 25889489--25889947 Score: 355
Period size: 53 Copynumber: 8.5 Consensus size: 54
25889479 AGGGAAAGTT
* * * ** *
25889489 GGTGTCGACCATGGC-TTGGCAGAGACCCAAAATATAATTTTTTATTTGA-AAA-AG
1 GGTGTCGGCCATGGCATGGGCA-ACACCCAAAATAT--TTTTTTATCAGATAAAGGG
* *
25889543 GGTGTCGGCCATGGCATAGGCAACATCCAAAAT-TTTTTTTATCAGATAAAGGG
1 GGTGTCGGCCATGGCATGGGCAACACCCAAAATATTTTTTTATCAGATAAAGGG
* *
25889596 AGTGTCGGCCATGACATGGGCAACACCCAAAAAAATATTTTTTTATCAGATAAAGGG
1 GGTGTCGGCCATGGCATGGGCAACACCC---AAAATATTTTTTTATCAGATAAAGGG
* * * ** *
25889653 GGTGTCGACCATTGCATGAGCAACACTAAAAAAAAATATTTTTTTATCAGATAAAAGG
1 GGTGTCGGCCATGGCATGGGCAACAC----CCAAAATATTTTTTTATCAGATAAAGGG
* * * * * *
25889711 GGTGTCGGCCATGGTATGGGCTACA-CCAAATTTTTTTTTTATCAAATAAAGAG
1 GGTGTCGGCCATGGCATGGGCAACACCCAAAATATTTTTTTATCAGATAAAGGG
* * *** * *
25889764 GATGTCGGTCATGGCATGGATGACA-CAAAAAAATATTTTTTATCAGATAAAGGG
1 GGTGTCGGCCATGGCATGGGCAACACCCAAAATAT-TTTTTTATCAGATAAAGGG
* * * * *
25889818 AGTGTCGGCCATGACATGGGCGACA-CCAAAAT-TTTTTTTATCAGATATATGG
1 GGTGTCGGCCATGGCATGGGCAACACCCAAAATATTTTTTTATCAGATAAAGGG
* * * * **
25889870 GGTGTCGACCATGGCATGGGCGACA--C-TAATTTTTTTTTATTTGATAAAGGG
1 GGTGTCGGCCATGGCATGGGCAACACCCAAAATATTTTTTTATCAGATAAAGGG
* * *
25889921 AGTGTCAGCCATGGCATGGGCGACACC
1 GGTGTCGGCCATGGCATGGGCAACACC
25889948 AATTTTTTTT
Statistics
Matches: 326, Mismatches: 64, Indels: 31
0.77 0.15 0.07
Matches are distributed among these distances:
50 3 0.01
51 49 0.15
52 42 0.13
53 72 0.22
54 64 0.20
55 5 0.02
56 5 0.02
57 41 0.13
58 45 0.14
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (54 bp):
GGTGTCGGCCATGGCATGGGCAACACCCAAAATATTTTTTTATCAGATAAAGGG
Found at i:25889691 original size:58 final size:58
Alignment explanation
Indices: 25889571--25889881 Score: 235
Period size: 58 Copynumber: 5.7 Consensus size: 58
25889561 GGCAACATCC
* * **
25889571 AAAAT-TTTTTTTATCAGATAAAGGGAGTGTCGGCCA-TGACATGGGCAACACCCAAA
1 AAAATATTTTTTTATCAGATAAAGGGGGTGTCGGCCATTGACATGAGCAACACAAAAA
*
25889627 AAAATATTTTTTTATCAGATAAAGGGGGTGTCGACCATTG-CATGAGCAACACTAAAAA
1 AAAATATTTTTTTATCAGATAAAGGGGGTGTCGGCCATTGACATGAGCAACAC-AAAAA
* ** * * *
25889685 AAAATATTTTTTTATCAGATAAAAGGGGTGTCGGCCA-TGGTATGGGCTACAC----C
1 AAAATATTTTTTTATCAGATAAAGGGGGTGTCGGCCATTGACATGAGCAACACAAAAA
* * * * * * * ** *
25889738 AAATTTTTTTTTTATCAAATAAAGAGGATGTCGGTCA-TGGCATG-G-ATGACACAAA
1 AAAATATTTTTTTATCAGATAAAGGGGGTGTCGGCCATTGACATGAGCAACACAAAAA
* * * *
25889793 AAAATA-TTTTTTATCAGATAAAGGGAGTGTCGGCCA-TGACATGGGCGACAC----C
1 AAAATATTTTTTTATCAGATAAAGGGGGTGTCGGCCATTGACATGAGCAACACAAAAA
* * *
25889845 AAAAT-TTTTTTTATCAGATATATGGGGTGTCGACCAT
1 AAAATATTTTTTTATCAGATAAAGGGGGTGTCGGCCAT
25889882 GGCATGGGCG
Statistics
Matches: 204, Mismatches: 39, Indels: 27
0.76 0.14 0.10
Matches are distributed among these distances:
51 2 0.01
52 32 0.16
53 36 0.18
54 31 0.15
55 5 0.02
56 7 0.03
57 42 0.21
58 49 0.24
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (58 bp):
AAAATATTTTTTTATCAGATAAAGGGGGTGTCGGCCATTGACATGAGCAACACAAAAA
Found at i:25889926 original size:51 final size:51
Alignment explanation
Indices: 25889686--25889958 Score: 257
Period size: 51 Copynumber: 5.2 Consensus size: 51
25889676 CACTAAAAAA
* * * *
25889686 AAATATTTTTTTATCAGATAAAAGGG-GTGTCGGCCATGGTATGGGCTACACC
1 AAATTTTTTTTTATCAGAT-AAAGGGAGTGTCGACCATGGCATGGGCGACA-C
* ** **
25889738 AAATTTTTTTTTTATCAAATAAAGAGGA-TGTCGGTCATGGCATGGATGACAC
1 AAA-TTTTTTTTTATCAGATAAAG-GGAGTGTCGACCATGGCATGGGCGACAC
* * * *
25889790 AAAAAAATATTTTTTATCAGATAAAGGGAGTGTCGGCCATGACATGGGCGACACC
1 ---AAATTTTTTTTTATCAGATAAAGGGAGTGTCGACCATGGCATGGGCGACA-C
* *
25889845 AAAATTTTTTTTATCAGATATATGGG-GTGTCGACCATGGCATGGGCGACAC
1 AAATTTTTTTTTATCAGATA-AAGGGAGTGTCGACCATGGCATGGGCGACAC
* **
25889896 TAATTTTTTTTTATTTGATAAAGGGAGTGTC-AGCCATGGCATGGGCGACAC
1 AAATTTTTTTTTATCAGATAAAGGGAGTGTCGA-CCATGGCATGGGCGACAC
*
25889947 CAATTTTTTTTT
1 AAATTTTTTTTT
25889959 CCAAAATATC
Statistics
Matches: 186, Mismatches: 24, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
50 5 0.03
51 51 0.27
52 49 0.26
53 41 0.22
54 36 0.19
55 4 0.02
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (51 bp):
AAATTTTTTTTTATCAGATAAAGGGAGTGTCGACCATGGCATGGGCGACAC
Found at i:25891966 original size:6 final size:7
Alignment explanation
Indices: 25891949--25891974 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
25891939 AAACTATCCC
25891949 TTTTTTA
1 TTTTTTA
25891956 TTTTTTA
1 TTTTTTA
25891963 TTTTTTA
1 TTTTTTA
25891970 TTTTT
1 TTTTT
25891975 GTGCTAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:25894106 original size:22 final size:23
Alignment explanation
Indices: 25894077--25894131 Score: 78
Period size: 25 Copynumber: 2.4 Consensus size: 23
25894067 GAAAGTCTTT
25894077 AAAA-TTGTA-TTGGGTTAGTAC
1 AAAACTTGTACTTGGGTTAGTAC
25894098 AAAACTTGTTATCTTGGGTTAGTAC
1 AAAACTTG-TA-CTTGGGTTAGTAC
25894123 AAAACTTGT
1 AAAACTTGT
25894132 TATTCCTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.13
22 3 0.10
23 2 0.07
24 1 0.03
25 20 0.67
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (23 bp):
AAAACTTGTACTTGGGTTAGTAC
Found at i:25894114 original size:25 final size:25
Alignment explanation
Indices: 25894086--25894134 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
25894076 TAAAATTGTA
25894086 TTGGGTTAGTACAAAACTTGTTATC
1 TTGGGTTAGTACAAAACTTGTTATC
25894111 TTGGGTTAGTACAAAACTTGTTAT
1 TTGGGTTAGTACAAAACTTGTTAT
25894135 TCCTGGTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (25 bp):
TTGGGTTAGTACAAAACTTGTTATC
Found at i:25895478 original size:24 final size:21
Alignment explanation
Indices: 25895427--25895466 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25895417 CCTACAACTT
*
25895427 CTACCGATACAAATATTCTAA
1 CTACCGATACAAATATGCTAA
*
25895448 CTACCGATTCAAATATGCT
1 CTACCGATACAAATATGCT
25895467 CAGTACTACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (21 bp):
CTACCGATACAAATATGCTAA
Found at i:25896129 original size:41 final size:41
Alignment explanation
Indices: 25896052--25896269 Score: 247
Period size: 41 Copynumber: 5.2 Consensus size: 41
25896042 TCGAGTCACA
* * * *
25896052 AGTCTTCCTTTAACCATATTCTCATTCTCAACTCGAGACATG
1 AGTCTTCC-TTAATCAAAATCTCATTCTCATCTCGAGACATG
* *
25896094 AGTCTTCCTTAATCAAAATCTCATTCTCATTTCGAGACAGG
1 AGTCTTCCTTAATCAAAATCTCATTCTCATCTCGAGACATG
* * * *
25896135 AGTCTTCCTTATTCATAATCTCATTCTTATATCGAGACATG
1 AGTCTTCCTTAATCAAAATCTCATTCTCATCTCGAGACATG
* *
25896176 AGTCTTCCTTAATCAAAATCTCACTCTCATTTCGAGACATG
1 AGTCTTCCTTAATCAAAATCTCATTCTCATCTCGAGACATG
* ** * * *
25896217 AGTCTTCCATTTATACAATTTCTCATGCTCAACCCGAGACATG
1 AGTCTTCC-TTAAT-CAAAATCTCATTCTCATCTCGAGACATG
25896260 AGTCTTCCTT
1 AGTCTTCCTT
25896270 TTTATACACC
Statistics
Matches: 150, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
41 107 0.71
42 14 0.09
43 29 0.19
ACGTcount: A:0.27, C:0.26, G:0.11, T:0.36
Consensus pattern (41 bp):
AGTCTTCCTTAATCAAAATCTCATTCTCATCTCGAGACATG
Found at i:25896173 original size:82 final size:83
Alignment explanation
Indices: 25896052--25896269 Score: 298
Period size: 82 Copynumber: 2.6 Consensus size: 83
25896042 TCGAGTCACA
*
25896052 AGTCTTCCTTTAACCATATTCTCATTCTCAACTCGAGACATGAGTCTTCCTTAATCAAAATCTCA
1 AGTCTTCCTTTAACCATAATCTCATTCTCAACTCGAGACATGAGTCTTCCTTAATCAAAATCTCA
*
25896117 TTCTCATTTCGAGACAGG
66 CTCTCATTTCGAGACAGG
** *
25896135 AGTCTTCC-TTATTCATAATCTCATTCTTATA-TCGAGACATGAGTCTTCCTTAATCAAAATCTC
1 AGTCTTCCTTTAACCATAATCTCATTCTCA-ACTCGAGACATGAGTCTTCCTTAATCAAAATCTC
*
25896198 ACTCTCATTTCGAGACATG
65 ACTCTCATTTCGAGACAGG
* * * *
25896217 AGTCTTCCATTTATACAAT-TTCTCATGCTCAACCCGAGACATGAGTCTTCCTT
1 AGTCTTCC-TTTA-ACCATAATCTCATTCTCAACTCGAGACATGAGTCTTCCTT
25896270 TTTATACACC
Statistics
Matches: 117, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
82 74 0.63
83 10 0.09
84 31 0.26
85 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.11, T:0.36
Consensus pattern (83 bp):
AGTCTTCCTTTAACCATAATCTCATTCTCAACTCGAGACATGAGTCTTCCTTAATCAAAATCTCA
CTCTCATTTCGAGACAGG
Found at i:25900102 original size:21 final size:21
Alignment explanation
Indices: 25900051--25900125 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 21
25900041 TAGTTCAGAT
*
25900051 TTCTACCGATACAAGTAATAG
1 TTCTACCGATACAAGTAATAC
* * *
25900072 TTATATCGATACAAGTGACT-C
1 TTCTACCGATACAAGT-AATAC
**
25900093 TTCTACCGATACAAGTTTTAC
1 TTCTACCGATACAAGTAATAC
*
25900114 CTCTACCGATAC
1 TTCTACCGATAC
25900126 TAAAAACTGC
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
20 1 0.02
21 40 0.93
22 2 0.05
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (21 bp):
TTCTACCGATACAAGTAATAC
Found at i:25911925 original size:23 final size:22
Alignment explanation
Indices: 25911895--25911940 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
25911885 TTGCGATAAA
*
25911895 TTCTTCTTCTTTTCCTCTTTTCT
1 TTCTTCTTC-TCTCCTCTTTTCT
*
25911918 TTCTTCTTCTCTCTTCTTTTCT
1 TTCTTCTTCTCTCCTCTTTTCT
25911940 T
1 T
25911941 CCTCCTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (22 bp):
TTCTTCTTCTCTCCTCTTTTCT
Found at i:25911948 original size:17 final size:17
Alignment explanation
Indices: 25911896--25911950 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
25911886 TGCGATAAAT
25911896 TCTTCTTCTT-TTCCT-C
1 TCTTCTT-TTCTTCCTCC
* *
25911912 TTTTC-TTTCTTCTTCTC
1 TCTTCTTTTCTTCCTC-C
25911929 TCTTCTTTTCTTCCTCC
1 TCTTCTTTTCTTCCTCC
25911946 TCTTC
1 TCTTC
25911951 CTCAACACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
14 2 0.06
15 5 0.16
16 4 0.13
17 11 0.35
18 9 0.29
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (17 bp):
TCTTCTTTTCTTCCTCC
Found at i:25919024 original size:17 final size:18
Alignment explanation
Indices: 25918991--25919025 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
25918981 GAATTAACAA
25918991 AAATAAAAAGCTTAGTAAC
1 AAATAAAAA-CTTAGTAAC
25919010 AAATAAAAA-TTAGTAA
1 AAATAAAAACTTAGTAA
25919026 ATACAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
19 9 0.56
ACGTcount: A:0.63, C:0.06, G:0.09, T:0.23
Consensus pattern (18 bp):
AAATAAAAACTTAGTAAC
Found at i:25921838 original size:17 final size:17
Alignment explanation
Indices: 25921818--25921871 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
25921808 ACTATAATGC
* *
25921818 AAATGTATTAACAACTA
1 AAATGTAATGACAACTA
* *
25921835 AAATGCAATGACAATTAA
1 AAATGTAATGACAACT-A
25921853 AAATGTAATGACAACTA
1 AAATGTAATGACAACTA
25921870 AA
1 AA
25921872 TGCTATGCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
17 15 0.50
18 15 0.50
ACGTcount: A:0.56, C:0.11, G:0.09, T:0.24
Consensus pattern (17 bp):
AAATGTAATGACAACTA
Found at i:25921857 original size:18 final size:18
Alignment explanation
Indices: 25921828--25921871 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
25921818 AAATGTATTA
25921828 ACAACT-AAAATGCAATG
1 ACAACTAAAAATGCAATG
* *
25921845 ACAATTAAAAATGTAATG
1 ACAACTAAAAATGCAATG
25921863 ACAACTAAA
1 ACAACTAAA
25921872 TGCTATGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.57, C:0.14, G:0.09, T:0.20
Consensus pattern (18 bp):
ACAACTAAAAATGCAATG
Found at i:25922025 original size:21 final size:21
Alignment explanation
Indices: 25921983--25922026 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
25921973 GCCTTCTTCT
*
25921983 TTGCGCTTCTTTTTCTTATCC
1 TTGCGCTTCTCTTTCTTATCC
*
25922004 TTGCGCTTTCTCTTT-TTGTCC
1 TTGCGC-TTCTCTTTCTTATCC
25922025 TT
1 TT
25922027 TGAATCAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.02, C:0.27, G:0.11, T:0.59
Consensus pattern (21 bp):
TTGCGCTTCTCTTTCTTATCC
Found at i:25935606 original size:20 final size:21
Alignment explanation
Indices: 25935568--25935607 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
25935558 ATCATTAAGC
*
25935568 TTAATTAACCACCTTTTTAATT
1 TTAATTAA-CACCTATTTAATT
25935590 TTAATTAA-ACCTATTTAA
1 TTAATTAACACCTATTTAA
25935608 AATTAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
22 8 0.47
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAATTAACACCTATTTAATT
Found at i:25948357 original size:8 final size:8
Alignment explanation
Indices: 25948344--25948368 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
25948334 AATAGCATCG
25948344 TCAAAGAT
1 TCAAAGAT
25948352 TCAAAGAT
1 TCAAAGAT
25948360 TCAAAGAT
1 TCAAAGAT
25948368 T
1 T
25948369 AAACACATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (8 bp):
TCAAAGAT
Found at i:25952051 original size:29 final size:29
Alignment explanation
Indices: 25952009--25952084 Score: 134
Period size: 29 Copynumber: 2.6 Consensus size: 29
25951999 TGACATGAAT
*
25952009 TCTCAACGAACAAGTTCTTCGCCACGAAC
1 TCTCAACAAACAAGTTCTTCGCCACGAAC
*
25952038 TCTCAATAAACAAGTTCTTCGCCACGAAC
1 TCTCAACAAACAAGTTCTTCGCCACGAAC
25952067 TCTCAACAAACAAGTTCT
1 TCTCAACAAACAAGTTCT
25952085 CCACCTCTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.34, C:0.32, G:0.11, T:0.24
Consensus pattern (29 bp):
TCTCAACAAACAAGTTCTTCGCCACGAAC
Found at i:25973549 original size:27 final size:24
Alignment explanation
Indices: 25973497--25973543 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
25973487 TGGTTCGACG
*
25973497 GATAAAAAAAAGAAGAGGCACAAA
1 GATAAAAAAAAGAAGAAGCACAAA
*
25973521 GATAAAAAGAAGAAGAAGCACAA
1 GATAAAAAAAAGAAGAAGCACAA
25973544 GGAAGAGAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.66, C:0.09, G:0.21, T:0.04
Consensus pattern (24 bp):
GATAAAAAAAAGAAGAAGCACAAA
Found at i:25977949 original size:21 final size:19
Alignment explanation
Indices: 25977923--25977968 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
25977913 ATAGTTTACA
25977923 TGCATTTTTATTTATTGTCAC
1 TGCATTTTTATTT-TT-TCAC
*
25977944 TGCA-TTTTATTTTTTCAT
1 TGCATTTTTATTTTTTCAC
25977962 TGCATTT
1 TGCATTT
25977969 CTTTCGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 7 0.30
19 4 0.17
20 8 0.35
21 4 0.17
ACGTcount: A:0.17, C:0.13, G:0.09, T:0.61
Consensus pattern (19 bp):
TGCATTTTTATTTTTTCAC
Found at i:25977967 original size:18 final size:20
Alignment explanation
Indices: 25977923--25977968 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
25977913 ATAGTTTACA
25977923 TGCATTTTTATTTATTGTCAC
1 TGCA-TTTTATTTATTGTCAC
*
25977944 TGCATTTTATTT-TT-TCAT
1 TGCATTTTATTTATTGTCAC
25977962 TGCATTT
1 TGCATTT
25977969 CTTTCGTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 10 0.42
19 2 0.08
20 8 0.33
21 4 0.17
ACGTcount: A:0.17, C:0.13, G:0.09, T:0.61
Consensus pattern (20 bp):
TGCATTTTATTTATTGTCAC
Found at i:25984043 original size:26 final size:26
Alignment explanation
Indices: 25984013--25984142 Score: 89
Period size: 26 Copynumber: 5.2 Consensus size: 26
25984003 CAATTTAAAT
25984013 CATTCATTAAAGAATTGAAGATACAA
1 CATTCATTAAAGAATTGAAGATACAA
* * * **
25984039 CATTCAGT-CA-AATT-TATCTA-AA
1 CATTCATTAAAGAATTGAAGATACAA
25984061 TCATTCATTAAAGAATTGAAGATACAA
1 -CATTCATTAAAGAATTGAAGATACAA
* * **
25984088 CATTC--TATCA-AATT-TATCTA-AA
1 CATTCATTA-AAGAATTGAAGATACAA
25984110 TCATTCATTAAAGAATTGAAGATACAA
1 -CATTCATTAAAGAATTGAAGATACAA
25984137 CATTCA
1 CATTCA
25984143 GTCAAATTTA
Statistics
Matches: 74, Mismatches: 18, Indels: 24
0.64 0.16 0.21
Matches are distributed among these distances:
22 4 0.05
23 18 0.24
24 12 0.16
25 12 0.16
26 24 0.32
27 4 0.05
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (26 bp):
CATTCATTAAAGAATTGAAGATACAA
Found at i:25984061 original size:49 final size:49
Alignment explanation
Indices: 25984008--25984167 Score: 286
Period size: 49 Copynumber: 3.3 Consensus size: 49
25983998 TAATGCAATT
25984008 TAAATCATTCATTAAAGAATTGAAGATACAACATTCAGTCAAATTTATC
1 TAAATCATTCATTAAAGAATTGAAGATACAACATTCAGTCAAATTTATC
25984057 TAAATCATTCATTAAAGAATTGAAGATACAACATTCTA-TCAAATTTATC
1 TAAATCATTCATTAAAGAATTGAAGATACAACATTC-AGTCAAATTTATC
25984106 TAAATCATTCATTAAAGAATTGAAGATACAACATTCAGTCAAATTTATC
1 TAAATCATTCATTAAAGAATTGAAGATACAACATTCAGTCAAATTTATC
* *
25984155 CAACTCATTCATT
1 TAAATCATTCATT
25984168 GATAATTCAC
Statistics
Matches: 107, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
48 1 0.01
49 105 0.98
50 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.34
Consensus pattern (49 bp):
TAAATCATTCATTAAAGAATTGAAGATACAACATTCAGTCAAATTTATC
Found at i:25984383 original size:17 final size:17
Alignment explanation
Indices: 25984361--25984393 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25984351 AGTAACATTT
*
25984361 AAATGTAATGACAATGA
1 AAATGTAACGACAATGA
25984378 AAATGTAACGACAATG
1 AAATGTAACGACAATG
25984394 CTTACTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.09, G:0.18, T:0.21
Consensus pattern (17 bp):
AAATGTAACGACAATGA
Found at i:25998404 original size:12 final size:12
Alignment explanation
Indices: 25998387--25998413 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
25998377 CAACAATCTT
25998387 CATCATTAAGAA
1 CATCATTAAGAA
25998399 CATCATTAAGAA
1 CATCATTAAGAA
25998411 CAT
1 CAT
25998414 GAATGGAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.19, G:0.07, T:0.26
Consensus pattern (12 bp):
CATCATTAAGAA
Found at i:26002264 original size:10 final size:10
Alignment explanation
Indices: 26002233--26002266 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
26002223 TGGCAATATA
26002233 TTTCTTTTCTT
1 TTTC-TTTCTT
*
26002244 CTTCTTTCTT
1 TTTCTTTCTT
26002254 TTTCTTTCTT
1 TTTCTTTCTT
26002264 TTT
1 TTT
26002267 GTGTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 18 0.86
11 3 0.14
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:26016836 original size:22 final size:22
Alignment explanation
Indices: 26016803--26016845 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
26016793 TATATACTAT
26016803 TTTTCTTACTTTAT-TTTATTTA
1 TTTTCTTACTTT-TCTTTATTTA
26016825 TTTT-TTATCTTTTCTTTATTT
1 TTTTCTTA-CTTTTCTTTATTT
26016846 GCTTAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTCTTACTTTTCTTTATTTA
Found at i:26019941 original size:28 final size:28
Alignment explanation
Indices: 26019889--26019943 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
26019879 AAATGAGCAT
* **
26019889 CATGACCTTTGGGTCAATAGGGAGTAAG
1 CATGACCTTTGGGTCAACAAAGAGTAAG
*
26019917 CATGACTTTTGGGTCAACAAAGAGTAA
1 CATGACCTTTGGGTCAACAAAGAGTAA
26019944 ATCAGATATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (28 bp):
CATGACCTTTGGGTCAACAAAGAGTAAG
Found at i:26026831 original size:51 final size:51
Alignment explanation
Indices: 26026746--26026880 Score: 182
Period size: 51 Copynumber: 2.6 Consensus size: 51
26026736 GCTATAAACG
* * * *
26026746 AAAGAGTCCGATGACTAAGTGTCATCCTGAGTAAATGAATCCTTTACGGATT
1 AAAG-GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCATGACGAATT
*
26026798 AAAGGTCTGATGACTAAGTGTCATCGTGAGTAAATGAATCCATGACGAATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCATGACGAATT
* *
26026849 AAAGTTCCGATGAC-AATATGTCATCGTGAGTA
1 AAAGGTCCGATGACTAA-GTGTCATCGTGAGTA
26026881 TTAAATTAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
50 2 0.03
51 68 0.92
52 4 0.05
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCATGACGAATT
Found at i:26031002 original size:55 final size:55
Alignment explanation
Indices: 26030942--26031099 Score: 174
Period size: 55 Copynumber: 2.9 Consensus size: 55
26030932 CAAATAGTTG
* * *
26030942 TCAAATGCGATAACAATTTTGGGCGCAATTCTGGATATGCTCATGCAGGGAGCTA
1 TCAAATGCGGTAACAATTCTGGGCGTAATTCTGGATATGCTCATGCAGGGAGCTA
* * * * *
26030997 TCAAATGCGGTGATAATTCTGGACGTAA-TCTTGGATATGCTCATGCAGTGAGCTG
1 TCAAATGCGGTAACAATTCTGGGCGTAATTC-TGGATATGCTCATGCAGGGAGCTA
* * * * * *
26031052 TTAGATGCGGCAACAATTCTGGGCATAATTCTAGATATGCTCTTGCAG
1 TCAAATGCGGTAACAATTCTGGGCGTAATTCTGGATATGCTCATGCAG
26031100 CGACATTAGT
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
54 2 0.02
55 80 0.95
56 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (55 bp):
TCAAATGCGGTAACAATTCTGGGCGTAATTCTGGATATGCTCATGCAGGGAGCTA
Found at i:26038704 original size:26 final size:26
Alignment explanation
Indices: 26038619--26038723 Score: 106
Period size: 26 Copynumber: 4.0 Consensus size: 26
26038609 TTACTACTAA
*
26038619 TGTCGCTGCATGATCATGTCTAGAAT
1 TGTCGCTGCATGAACATGTCTAGAAT
* * *
26038645 TGTCGCTACA-GAAACTTGTCCAGAAT
1 TGTCGCTGCATG-AACATGTCTAGAAT
* *
26038671 TATCGCTGCATGAACATGTCTAGAGT
1 TGTCGCTGCATGAACATGTCTAGAAT
* *
26038697 TGTCGCTGTATGAGCATGTAC-AGAAT
1 TGTCGCTGCATGAACATGT-CTAGAAT
26038723 T
1 T
26038724 AAGCCCAGAA
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
25 1 0.02
26 60 0.95
27 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
TGTCGCTGCATGAACATGTCTAGAAT
Found at i:26044042 original size:17 final size:18
Alignment explanation
Indices: 26044004--26044043 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
26043994 GCAAATGCGT
26044004 TGACAAATAAAATGCAGA
1 TGACAAATAAAATGCAGA
*
26044022 -GACAAGTAAAATGCA-A
1 TGACAAATAAAATGCAGA
26044038 TGACAA
1 TGACAA
26044044 CTATATGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.55, C:0.12, G:0.17, T:0.15
Consensus pattern (18 bp):
TGACAAATAAAATGCAGA
Found at i:26048778 original size:81 final size:81
Alignment explanation
Indices: 26048689--26048847 Score: 291
Period size: 81 Copynumber: 2.0 Consensus size: 81
26048679 ACGACAGTAA
* * *
26048689 TCCATGCACACTCGCCAACCTGTAGCAATGCGAGTAGGGATTAATTCATTTTTATCCTTGCTTAC
1 TCCATGCACACTCGCCAACCTATAGCAATACGAGTAGGGATTAATTCATTTTTATCATTGCTTAC
26048754 CACCGTAATGTCGTAC
66 CACCGTAATGTCGTAC
26048770 TCCATGCACACTCGCCAACCTATAGCAATACGAGTAGGGATTAATTCATTTTTATCATTGCTTAC
1 TCCATGCACACTCGCCAACCTATAGCAATACGAGTAGGGATTAATTCATTTTTATCATTGCTTAC
26048835 CACCGTAATGTCG
66 CACCGTAATGTCG
26048848 CTATTCTTTG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 75 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (81 bp):
TCCATGCACACTCGCCAACCTATAGCAATACGAGTAGGGATTAATTCATTTTTATCATTGCTTAC
CACCGTAATGTCGTAC
Found at i:26066058 original size:26 final size:26
Alignment explanation
Indices: 26066029--26066092 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
26066019 TGCAAAAACT
26066029 TGTCCAGAATTATCGCTACATGAACA
1 TGTCCAGAATTATCGCTACATGAACA
* * ** *
26066055 TGTCCAGAGTTGTCGCTGTATGAGCA
1 TGTCCAGAATTATCGCTACATGAACA
26066081 TGTCCAGAATTA
1 TGTCCAGAATTA
26066093 CGGCCTGAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (26 bp):
TGTCCAGAATTATCGCTACATGAACA
Found at i:26068587 original size:21 final size:21
Alignment explanation
Indices: 26068546--26068587 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26068536 CATTTAGGTG
* **
26068546 TGTTGATTGTAGTTCTGTTGT
1 TGTTGATTGTAATTCCCTTGT
26068567 TGTTGATTGTAATTCCCTTGT
1 TGTTGATTGTAATTCCCTTGT
26068588 CTTGGATTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.10, G:0.24, T:0.55
Consensus pattern (21 bp):
TGTTGATTGTAATTCCCTTGT
Found at i:26099014 original size:71 final size:71
Alignment explanation
Indices: 26098898--26099039 Score: 275
Period size: 71 Copynumber: 2.0 Consensus size: 71
26098888 TCTCCGTACA
26098898 TCTGCCTTTCCAAGCACCCATGTAAAGGTGGGTATATCCCTAGTTTTGCCCCATCCTAAATCTTT
1 TCTGCCTTTCCAAGCACCCATGTAAAGGTGGGTATATCCCTAGTTTTGCCCCATCCTAAATCTTT
26098963 TATCAC
66 TATCAC
*
26098969 TCTGCCTTTCCAAGCACCCATGTAAAGGTGGGTATATCCCTAGTTTTGCCCCTTCCTAAATCTTT
1 TCTGCCTTTCCAAGCACCCATGTAAAGGTGGGTATATCCCTAGTTTTGCCCCATCCTAAATCTTT
26099034 TATCAC
66 TATCAC
26099040 CATAACCTAT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.35
Consensus pattern (71 bp):
TCTGCCTTTCCAAGCACCCATGTAAAGGTGGGTATATCCCTAGTTTTGCCCCATCCTAAATCTTT
TATCAC
Found at i:26101751 original size:26 final size:26
Alignment explanation
Indices: 26101722--26101775 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
26101712 GGAACTTGTT
*
26101722 CAAAATTATCGTTGTGTGAAT-ATGTC
1 CAAAATTATCGTTGTAT-AATCATGTC
* *
26101748 CAAAGTTGTCGTTGTATAATCATGTC
1 CAAAATTATCGTTGTATAATCATGTC
26101774 CA
1 CA
26101776 GAACTGTCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (26 bp):
CAAAATTATCGTTGTATAATCATGTC
Found at i:26102928 original size:33 final size:33
Alignment explanation
Indices: 26102863--26102927 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 33
26102853 TATTTTCACA
* *
26102863 TTTTTTTTCAAGTTTTATTTTATTTTATTTTTG
1 TTTTTGTTCAAGTTTTATTTTATCTTATTTTTG
26102896 TTTTTGTTCAAG-TTTATTTTACGTCTTATTTT
1 TTTTTGTTCAAGTTTTATTTTA--TCTTATTTT
26102928 GAAAATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 9 0.32
33 11 0.39
34 8 0.29
ACGTcount: A:0.15, C:0.06, G:0.08, T:0.71
Consensus pattern (33 bp):
TTTTTGTTCAAGTTTTATTTTATCTTATTTTTG
Found at i:26103934 original size:9 final size:9
Alignment explanation
Indices: 26103910--26103938 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
26103900 AGAAGTTCAG
26103910 AAAGGAAGA
1 AAAGGAAGA
26103919 AAA-GAAGA
1 AAAGGAAGA
26103927 AAAGGAAGA
1 AAAGGAAGA
26103936 AAA
1 AAA
26103939 ACACTACGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (9 bp):
AAAGGAAGA
Found at i:26110595 original size:12 final size:12
Alignment explanation
Indices: 26110578--26110614 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
26110568 TTCTTCATAC
26110578 TATTTGTTGTTT
1 TATTTGTTGTTT
26110590 TATTTGTTGTTT
1 TATTTGTTGTTT
26110602 TATTTGTTGTTT
1 TATTTGTTGTTT
26110614 T
1 T
26110615 TGCTGCCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.08, C:0.00, G:0.16, T:0.76
Consensus pattern (12 bp):
TATTTGTTGTTT
Found at i:26111274 original size:103 final size:104
Alignment explanation
Indices: 26111167--26111366 Score: 278
Period size: 103 Copynumber: 1.9 Consensus size: 104
26111157 ATAAAAAAAC
* * *
26111167 AAATTAGGAGTGGGTTGGGTTGAGTAACC-AAGATGGAGTGCTTGGGTTGTCATTCCATTTTGCG
1 AAATTAGGAGTGGGTTGGGCTGAGTAACCGAA-ATGGAGTGCTTAGGTTGTCATTCCATTTCGCG
* * *
26111231 TCAAAATGGCCAATACATTCTTAAG-AAAAAAATGATAAT
65 TAAAAAGGGCAAATACATTCTTAAGCAAAAAAATGATAAT
* * *
26111270 AAATTATGAGTGTGTTGGGCTGAGTAACCGAAATGGAGTGCTTAGGTTGTCATTCCATTTCGTGT
1 AAATTAGGAGTGGGTTGGGCTGAGTAACCGAAATGGAGTGCTTAGGTTGTCATTCCATTTCGCGT
* *
26111335 AAAAAGGGTAAATATATTCTTAAGCAAAAAAA
66 AAAAAGGGCAAATACATTCTTAAGCAAAAAAA
26111367 AAGGAAGAAA
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
103 75 0.89
104 9 0.11
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.30
Consensus pattern (104 bp):
AAATTAGGAGTGGGTTGGGCTGAGTAACCGAAATGGAGTGCTTAGGTTGTCATTCCATTTCGCGT
AAAAAGGGCAAATACATTCTTAAGCAAAAAAATGATAAT
Found at i:26119067 original size:17 final size:17
Alignment explanation
Indices: 26119035--26119091 Score: 78
Period size: 17 Copynumber: 3.3 Consensus size: 17
26119025 ATTAATTTAA
*
26119035 AATGACAAATGGAAATGC
1 AATGAC-AATGAAAATGC
*
26119053 AATGACAATGCAAATGC
1 AATGACAATGAAAATGC
*
26119070 AATGACAATTAAAATGC
1 AATGACAATGAAAATGC
26119087 AATGA
1 AATGA
26119092 AAAAGGGGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
17 30 0.83
18 6 0.17
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (17 bp):
AATGACAATGAAAATGC
Found at i:26124023 original size:26 final size:26
Alignment explanation
Indices: 26123994--26124043 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
26123984 ATGACTCTGG
26123994 ACAGATTCACACAACGATAATTCTAA
1 ACAGATTCACACAACGATAATTCTAA
* ** *
26124020 ACAGGTTCATGCATCGATAATTCT
1 ACAGATTCACACAACGATAATTCT
26124044 GGGCGCAATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (26 bp):
ACAGATTCACACAACGATAATTCTAA
Found at i:26126826 original size:13 final size:13
Alignment explanation
Indices: 26126808--26126841 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
26126798 TTACTTAGAC
*
26126808 TTTAGTTTTTAGT
1 TTTAGTTTTTACT
26126821 TTTAGTTTTTACT
1 TTTAGTTTTTACT
26126834 TTTCAGTT
1 TTT-AGTT
26126842 GTGAAACGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.15, C:0.06, G:0.12, T:0.68
Consensus pattern (13 bp):
TTTAGTTTTTACT
Found at i:26130953 original size:5 final size:5
Alignment explanation
Indices: 26130938--26130969 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
26130928 CATATATAAA
*
26130938 AAAAG AGAAG AAAAG AAAAG AAAAG AAAAG AA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AA
26130970 TATATATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AAAAG
Done.