Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 82 of 143
Found at i:26133696 original size:78 final size:78
Alignment explanation
Indices: 26133567--26133722 Score: 294
Period size: 78 Copynumber: 2.0 Consensus size: 78
26133557 TCATAGCTTA
* *
26133567 GAAAGTTCATAAAGTTAAATAGATTTACCAAACTTCAAGAGTTGTACAATCTAATCAACCAGATC
1 GAAAGTTCATAAAGTTAAATAGATTTACAAAACTTCAAGAGTTGTACAATCTAATCAACCAAATC
26133632 GAGTAAGCTGTAT
66 GAGTAAGCTGTAT
26133645 GAAAGTTCATAAAGTTAAATAGATTTACAAAACTTCAAGAGTTGTACAATCTAATCAACCAAATC
1 GAAAGTTCATAAAGTTAAATAGATTTACAAAACTTCAAGAGTTGTACAATCTAATCAACCAAATC
26133710 GAGTAAGCTGTAT
66 GAGTAAGCTGTAT
26133723 ATATCCGTTG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (78 bp):
GAAAGTTCATAAAGTTAAATAGATTTACAAAACTTCAAGAGTTGTACAATCTAATCAACCAAATC
GAGTAAGCTGTAT
Found at i:26133834 original size:61 final size:61
Alignment explanation
Indices: 26133756--26133969 Score: 324
Period size: 61 Copynumber: 3.5 Consensus size: 61
26133746 TCATTTGATA
* * *
26133756 ACTCACGAT-ATCGTAAAGAAATCAGACCTTTAATCAATAATAGGATTCATTTTCATGTAAT
1 ACTCACGATGA-CATAAAGACATCAGACCTTTAATCCATAATAGGATTCATTTTCATGTAAT
* * * *
26133817 ACTCACGATGACATAAAGACATCGGACCTTTAATCCATAATAGTATTCATTTCCATGTTAT
1 ACTCACGATGACATAAAGACATCAGACCTTTAATCCATAATAGGATTCATTTTCATGTAAT
*
26133878 ACTCACGATGACATAAAGACATCAGACCTTTAATCCATTATAGGATTCATTTTCATGTAAT
1 ACTCACGATGACATAAAGACATCAGACCTTTAATCCATAATAGGATTCATTTTCATGTAAT
26133939 ACTCACGATGACATAAAGACATC-GAACCTTT
1 ACTCACGATGACATAAAGACATCAG-ACCTTT
26133970 TTACATTTAC
Statistics
Matches: 139, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
60 1 0.01
61 137 0.99
62 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (61 bp):
ACTCACGATGACATAAAGACATCAGACCTTTAATCCATAATAGGATTCATTTTCATGTAAT
Found at i:26136884 original size:18 final size:18
Alignment explanation
Indices: 26136861--26136898 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
26136851 TGTATTTTCA
26136861 AATTCGAAT-AACTCGAAT
1 AATTCGAATAAAC-CGAAT
26136879 AATTCGAATAAACCGAAT
1 AATTCGAATAAACCGAAT
26136897 AA
1 AA
26136899 AACTATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.50, C:0.16, G:0.11, T:0.24
Consensus pattern (18 bp):
AATTCGAATAAACCGAAT
Found at i:26137079 original size:34 final size:34
Alignment explanation
Indices: 26137036--26137111 Score: 134
Period size: 34 Copynumber: 2.2 Consensus size: 34
26137026 CATAAACTAA
*
26137036 ACCCAAATATTTTTAATTTTCTACCTTTTATCTT
1 ACCCAAATATTTTTAATTTTCTACCTTTTACCTT
*
26137070 ACCCAAATATTTTTAATTTTTTACCTTTTACCTT
1 ACCCAAATATTTTTAATTTTCTACCTTTTACCTT
26137104 ACCCAAAT
1 ACCCAAAT
26137112 GTTGTTTACT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (34 bp):
ACCCAAATATTTTTAATTTTCTACCTTTTACCTT
Found at i:26163997 original size:18 final size:18
Alignment explanation
Indices: 26163974--26164126 Score: 146
Period size: 18 Copynumber: 8.5 Consensus size: 18
26163964 ATGCGGAAGG
*
26163974 ATACTGGCTAGTTTAAGC
1 ATACTGGCTCGTTTAAGC
*
26163992 ATACTGGCTCATTTAAGC
1 ATACTGGCTCGTTTAAGC
* *
26164010 ATACTAGCTCGTTTAGGC
1 ATACTGGCTCGTTTAAGC
* **
26164028 ATACTAGCTCGTTTGGGC
1 ATACTGGCTCGTTTAAGC
* * **
26164046 ATACTGACTCATTTGGGC
1 ATACTGGCTCGTTTAAGC
* *
26164064 ATACTAGCTCGTTTGAGC
1 ATACTGGCTCGTTTAAGC
* *
26164082 ATAATGGCTCGTTTCAGC
1 ATACTGGCTCGTTTAAGC
*
26164100 GTACTGGCTCG-TTAGAGC
1 ATACTGGCTCGTTTA-AGC
26164118 ATACTGGCT
1 ATACTGGCT
26164127 AGTAAGAGCA
Statistics
Matches: 114, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
17 2 0.02
18 112 0.98
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.33
Consensus pattern (18 bp):
ATACTGGCTCGTTTAAGC
Found at i:26164134 original size:18 final size:18
Alignment explanation
Indices: 26164101--26164137 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26164091 CGTTTCAGCG
* *
26164101 TACTGGCTCGTTAGAGCA
1 TACTGGCTAGTAAGAGCA
26164119 TACTGGCTAGTAAGAGCA
1 TACTGGCTAGTAAGAGCA
26164137 T
1 T
26164138 TACTAGATCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (18 bp):
TACTGGCTAGTAAGAGCA
Found at i:26168537 original size:51 final size:51
Alignment explanation
Indices: 26168409--26168583 Score: 282
Period size: 51 Copynumber: 3.5 Consensus size: 51
26168399 AAAGAGTTTA
26168409 ATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTCCG
1 ATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTCCG
26168460 -TGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTCCG
1 ATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTCCG
* * * *
26168510 AGGACTAAGTGTCATTGTGAGTAAATGAATCCATTACGAATTAAAGGTCCG
1 ATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTCCG
*
26168561 ATGAC-AATATGTCATCGTGAGTA
1 ATGACTAA-GTGTCATCGTGAGTA
26168584 TTAAATGAAA
Statistics
Matches: 115, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
50 52 0.45
51 63 0.55
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (51 bp):
ATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTCCG
Found at i:26176809 original size:17 final size:17
Alignment explanation
Indices: 26176789--26176828 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
26176779 AAATAATACG
*
26176789 GATATAGTCATGTCACA
1 GATATAGCCATGTCACA
*
26176806 GATACAGCCATGTCACA
1 GATATAGCCATGTCACA
26176823 GATATA
1 GATATA
26176829 ATTACGGATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (17 bp):
GATATAGCCATGTCACA
Found at i:26176856 original size:29 final size:29
Alignment explanation
Indices: 26176803--26176875 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
26176793 TAGTCATGTC
* *
26176803 ACAGATACAGCCAT-GTCACAGATATAATT
1 ACAGATGCAGACATGGT-ACAGATATAATT
* *
26176832 ACGGATGCAGACATGGTACAGATATAGTT
1 ACAGATGCAGACATGGTACAGATATAATT
26176861 ACAGATGCAGACATG
1 ACAGATGCAGACATG
26176876 ATACCCCCAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 36 0.95
30 2 0.05
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (29 bp):
ACAGATGCAGACATGGTACAGATATAATT
Found at i:26177497 original size:53 final size:53
Alignment explanation
Indices: 26177434--26177564 Score: 181
Period size: 53 Copynumber: 2.5 Consensus size: 53
26177424 CTCAAAACAA
* * *
26177434 TATACCCACACCCTAACACATGCCCATGTCTCAGCCCATGTGCCCTAGAATAG
1 TATACACACACCCTGACACATGCCCATGTCTCAGCCCATGTACCCTAGAATAG
* * * * *
26177487 TATACACACACCCTGACACACGCCCATTTGTCAGCCCGTGTACCTTAGAATAG
1 TATACACACACCCTGACACATGCCCATGTCTCAGCCCATGTACCCTAGAATAG
*
26177540 TATAAACACACCCTGACACATGCCC
1 TATACACACACCCTGACACATGCCC
26177565 GTGTACCATC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 68 1.00
ACGTcount: A:0.30, C:0.37, G:0.13, T:0.21
Consensus pattern (53 bp):
TATACACACACCCTGACACATGCCCATGTCTCAGCCCATGTACCCTAGAATAG
Found at i:26177595 original size:53 final size:53
Alignment explanation
Indices: 26177538--26177672 Score: 171
Period size: 53 Copynumber: 2.5 Consensus size: 53
26177528 ACCTTAGAAT
** *
26177538 AGTATAAACACACCCTGACACATGCCCGTGTACCATCCTGTATGCCTCCAAAC
1 AGTATAAACACACCCTGACACACCCCCGTGTACCAACCTGTATGCCTCCAAAC
* * * *
26177591 AGTATACACACACCTTGACACACCCCCGTGTACTAACCTGTATGGCTCCAAAC
1 AGTATAAACACACCCTGACACACCCCCGTGTACCAACCTGTATGCCTCCAAAC
* * * *
26177644 AGTATATACAAACCCTGGCACACACCCGT
1 AGTATAAACACACCCTGACACACCCCCGT
26177673 ATTCCTCTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 70 1.00
ACGTcount: A:0.31, C:0.36, G:0.13, T:0.20
Consensus pattern (53 bp):
AGTATAAACACACCCTGACACACCCCCGTGTACCAACCTGTATGCCTCCAAAC
Found at i:26177790 original size:62 final size:62
Alignment explanation
Indices: 26177715--26177833 Score: 184
Period size: 62 Copynumber: 1.9 Consensus size: 62
26177705 CACACATCCG
* * *
26177715 TGTGCCTCTTGCAACTTATTTTAACGACACACACCTTAGACACACCCCCGTGTGCCATCCAA
1 TGTGCCTCCTGCAACTCATTTTAACAACACACACCTTAGACACACCCCCGTGTGCCATCCAA
* * *
26177777 TGTGCCTCCTGCAACTCATTTTAATAACACACACCTTGGACACACCCCTGTGTGCCA
1 TGTGCCTCCTGCAACTCATTTTAACAACACACACCTTAGACACACCCCCGTGTGCCA
26177834 GCCCGTGTTC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 51 1.00
ACGTcount: A:0.25, C:0.35, G:0.13, T:0.26
Consensus pattern (62 bp):
TGTGCCTCCTGCAACTCATTTTAACAACACACACCTTAGACACACCCCCGTGTGCCATCCAA
Found at i:26183999 original size:42 final size:43
Alignment explanation
Indices: 26183952--26184032 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
26183942 CGGGCTGGGA
* *
26183952 ACACGGGCATG-TACAAGCCGTATGTGCATCCTATTTTGTGAC
1 ACACGGGCATGTTACAAACCGTATGTGCATACTATTTTGTGAC
* * *
26183994 ACACGGGCGTGTTTCAAACCGTGTGTGCATACTATTTTG
1 ACACGGGCATGTTACAAACCGTATGTGCATACTATTTTG
26184033 GAAATAGCGT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
42 10 0.30
43 23 0.70
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (43 bp):
ACACGGGCATGTTACAAACCGTATGTGCATACTATTTTGTGAC
Found at i:26184453 original size:40 final size:40
Alignment explanation
Indices: 26184402--26184620 Score: 217
Period size: 40 Copynumber: 5.5 Consensus size: 40
26184392 GATTGTATGT
*
26184402 ACTGGCAGTGACACTGTAAACACTACAAGATTATC-ACTGA
1 ACTGGCAGTGACACTGTAAACACTACAAGATTA-CAATTGA
** ** *
26184442 ACTAACAGTGACACTGTAAACACTACAAGATTATTACTGA
1 ACTGGCAGTGACACTGTAAACACTACAAGATTACAATTGA
* * * ** *
26184482 ACTGGCAGTAACACAGTAAACACTGCATTATTACTATTGA
1 ACTGGCAGTGACACTGTAAACACTACAAGATTACAATTGA
* * ** *
26184522 ATTGGCAGTGACACTATAAACACTGTAAGACTACAATTGA
1 ACTGGCAGTGACACTGTAAACACTACAAGATTACAATTGA
* * *
26184562 TCT-ACTAGTGACACTGTAAACACTCCAAGATTACAATTGA
1 ACTGGC-AGTGACACTGTAAACACTACAAGATTACAATTGA
*
26184602 ACTGGCAGTGAAACTGTAA
1 ACTGGCAGTGACACTGTAA
26184621 CATTGCATGT
Statistics
Matches: 145, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
39 1 0.01
40 143 0.99
41 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (40 bp):
ACTGGCAGTGACACTGTAAACACTACAAGATTACAATTGA
Found at i:26215075 original size:17 final size:17
Alignment explanation
Indices: 26215055--26215101 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
26215045 CTGTAGTATA
* * *
26215055 ATTGTCCCTGTATTTTT
1 ATTGTCACTGCATTTCT
26215072 ATTGTCACTGCATTTCT
1 ATTGTCACTGCATTTCT
*
26215089 ATTGTCGCTGCAT
1 ATTGTCACTGCAT
26215102 CTGCATTGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.15, C:0.21, G:0.15, T:0.49
Consensus pattern (17 bp):
ATTGTCACTGCATTTCT
Found at i:26218855 original size:19 final size:20
Alignment explanation
Indices: 26218801--26218855 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 20
26218791 TATACAAATT
* * *
26218801 TACAAGAAAATATTGATAAA
1 TACAAGAATATAGTGAAAAA
* *
26218821 TA-AAGTATGTAGTGAAAAA
1 TACAAGAATATAGTGAAAAA
26218840 TACAAGAATATA-TGAA
1 TACAAGAATATAGTGAA
26218856 TTTTTCTATC
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.56, C:0.04, G:0.15, T:0.25
Consensus pattern (20 bp):
TACAAGAATATAGTGAAAAA
Found at i:26232551 original size:4 final size:4
Alignment explanation
Indices: 26232501--26232589 Score: 106
Period size: 4 Copynumber: 22.2 Consensus size: 4
26232491 CGATATGCAA
* * * * * *
26232501 ACAT ACAA AGAT ACAT GCAT ACAT GCAT ACAT GCAT ACAT GCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
26232549 ACAT ACAT ACAT ACAT ACAT ACAT ACAT GCAT ACAT GCAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
26232590 AATGTATGTA
Statistics
Matches: 69, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 69 1.00
ACGTcount: A:0.45, C:0.24, G:0.08, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:26232902 original size:12 final size:12
Alignment explanation
Indices: 26232885--26232915 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26232875 GCAGACATAT
26232885 TGCATACATACA
1 TGCATACATACA
26232897 TGCATACATACA
1 TGCATACATACA
*
26232909 TACATAC
1 TGCATAC
26232916 GCTTTGGCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.26, G:0.06, T:0.26
Consensus pattern (12 bp):
TGCATACATACA
Found at i:26242361 original size:2 final size:2
Alignment explanation
Indices: 26242354--26242386 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26242344 GCAAAGACAC
26242354 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
26242387 TGTTAAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:26259551 original size:52 final size:52
Alignment explanation
Indices: 26259473--26259812 Score: 434
Period size: 52 Copynumber: 6.4 Consensus size: 52
26259463 GGGTTTTATA
*
26259473 ACTATGCGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCCGATG
1 ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCCGATG
* * * *
26259525 ACTATGTTTCATCGTGAGTATATGAATCCTTTACAGATTATGAGGTCCGAAG
1 ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCCGATG
*
26259577 ACTATGTGTCATCGTGAGTATATGAATACTTTACGGATTATAAGGTCCGATG
1 ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCCGATG
*
26259629 ACTATG-GTCATCGTGAGTATATGAATCCTTTACGGATTATGAA-GTCTGATG
1 ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT-AAGGTCCGATG
* ** *
26259680 ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTTAGGTG
1 ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCCGATG
* * *
26259732 ACTATATGTCATCGTGAGTATTAAATGAAATGAATCCCATTACGGATTA-AAGGTTCGATG
1 ACTATGTGTCATCGTGAG---T--AT---ATGAAT-CCTTTACGGATTATAAGGTCCGATG
*
26259792 ACTCTGTGTCATCGTGAGTAT
1 ACTATGTGTCATCGTGAGTAT
26259813 CAAATGTGAA
Statistics
Matches: 253, Mismatches: 23, Indels: 21
0.85 0.08 0.07
Matches are distributed among these distances:
51 47 0.19
52 158 0.62
55 3 0.01
57 3 0.01
60 30 0.12
61 12 0.05
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (52 bp):
ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCCGATG
Found at i:26259694 original size:103 final size:103
Alignment explanation
Indices: 26259473--26259752 Score: 434
Period size: 103 Copynumber: 2.7 Consensus size: 103
26259463 GGGTTTTATA
* *
26259473 ACTATGCGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCCGATGACTATGTTTCATC
1 ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCCGATGACTATG-GTCATC
*
26259538 GTGAGTATATGAATCCTTTACAGATTATGAGGTCCGAAG
65 GTGAGTATATGAATCCTTTACAGATTATGAAGTCCGAAG
*
26259577 ACTATGTGTCATCGTGAGTATATGAATACTTTACGGATTATAAGGTCCGATGACTATGGTCATCG
1 ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCCGATGACTATGGTCATCG
* * *
26259642 TGAGTATATGAATCCTTTACGGATTATGAAGTCTGATG
66 TGAGTATATGAATCCTTTACAGATTATGAAGTCCGAAG
* ** * *
26259680 ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTTAGGTGACTATATGTCATC
1 ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCCGATGACTAT-GGTCATC
26259745 GTGAGTAT
65 GTGAGTAT
26259753 TAAATGAAAT
Statistics
Matches: 162, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
103 92 0.57
104 70 0.43
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (103 bp):
ACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCCGATGACTATGGTCATCG
TGAGTATATGAATCCTTTACAGATTATGAAGTCCGAAG
Found at i:26259794 original size:60 final size:60
Alignment explanation
Indices: 26259701--26259818 Score: 157
Period size: 60 Copynumber: 2.0 Consensus size: 60
26259691 TCGTGAGTAT
* * * *
26259701 ATGAATCCTTTACGGATTATGAGGTTAGGTGACTATATGTCATCGTGAGTATTAAATGAA
1 ATGAATCCATTACGGATTATAAGGTTAGATGACTATATGTCATCGTGAGTATCAAATGAA
* * *
26259761 ATGAATCCCATTACGGATTA-AAGGTTCGATGACTCTGTGTCATCGTGAGTATCAAATG
1 ATGAAT-CCATTACGGATTATAAGGTTAGATGACTATATGTCATCGTGAGTATCAAATG
26259819 TGAATTGAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 38 0.76
61 12 0.24
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.33
Consensus pattern (60 bp):
ATGAATCCATTACGGATTATAAGGTTAGATGACTATATGTCATCGTGAGTATCAAATGAA
Found at i:26266276 original size:105 final size:105
Alignment explanation
Indices: 26266090--26266291 Score: 262
Period size: 105 Copynumber: 1.9 Consensus size: 105
26266080 TTATGGAAGA
** *
26266090 AATAAATTAGGAGTGTGTTGGGTTGAGTAACCGGGATGGAGCGCTTGAGTTGTCATTCCATTTCG
1 AATAAATTAGGAGTGTGTTGGACTGAGTAACCGAGATGGAGCGCTTGAGTTGTCATTCCATTTCG
** * * *
26266155 CGTCAAAAGGGTCAATACATTTTTAAGTAAAAATAATGAT
66 CACCAAAAGGGCCAATACATTCTTAAGCAAAAATAATGAT
* * * *
26266195 AATAAATT-GAGAGTGTGTTGGACTGAGTAACCTAGATGGGGTGCTTGGGTTGTCATTCCATTTC
1 AATAAATTAG-GAGTGTGTTGGACTGAGTAACCGAGATGGAGCGCTTGAGTTGTCATTCCATTTC
* *
26266259 GCACCAAGAGGGCCAATATATTCTTAAGCAAAA
65 GCACCAAAAGGGCCAATACATTCTTAAGCAAAA
26266292 GAAAAAAAAG
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
104 1 0.01
105 81 0.99
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (105 bp):
AATAAATTAGGAGTGTGTTGGACTGAGTAACCGAGATGGAGCGCTTGAGTTGTCATTCCATTTCG
CACCAAAAGGGCCAATACATTCTTAAGCAAAAATAATGAT
Found at i:26268173 original size:48 final size:48
Alignment explanation
Indices: 26268096--26268459 Score: 342
Period size: 48 Copynumber: 7.6 Consensus size: 48
26268086 TCAAAGTAAA
* * * *
26268096 GTAAACGTACATAAGCTGACAAGCATAAACGAGTGCAAGCAGACGAGC
1 GTAAACGTATATAAGCTGACGAGCGTAAACGAGTGCAAGCTGACGAGC
* * * *
26268144 GTAAACGTATATAAGCTAACGAGCGTAAACGTGTGCAAGTTGATGAGC
1 GTAAACGTATATAAGCTGACGAGCGTAAACGAGTGCAAGCTGACGAGC
* * * * * ** **
26268192 ATAAATGTGTACAAGCTGACAAGCGTAAACGTA-TATAAGCTGACGATT
1 GTAAACGTATATAAGCTGACGAGCGTAAACG-AGTGCAAGCTGACGAGC
* * * * *
26268240 GTAAACATGTGTAAGTTGACGAGCGTAAACGTGT-CAAGCTGACGAGC
1 GTAAACGTATATAAGCTGACGAGCGTAAACGAGTGCAAGCTGACGAGC
* * *
26268287 GTAAACGTATATAAGCTGACGAGCGTAAATGTGTGCAAGTTGACGAGC
1 GTAAACGTATATAAGCTGACGAGCGTAAACGAGTGCAAGCTGACGAGC
* * *
26268335 GTAAATGTATATAAGCTGGCGAGCGTAAAC-ATGTGCAAGCTAACGAGC
1 GTAAACGTATATAAGCTGACGAGCGTAAACGA-GTGCAAGCTGACGAGC
* * * * *
26268383 GTAAATGTATATAAGCTAACAAGCGTAAAC-ATGTGCAAGTTGACAAGC
1 GTAAACGTATATAAGCTGACGAGCGTAAACGA-GTGCAAGCTGACGAGC
* *
26268431 GTAAATGTATGA-AAGCTGGCGAGCGTAAA
1 GTAAACGTAT-ATAAGCTGACGAGCGTAAA
26268460 ACACAATGAA
Statistics
Matches: 258, Mismatches: 53, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
47 39 0.15
48 218 0.84
49 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (48 bp):
GTAAACGTATATAAGCTGACGAGCGTAAACGAGTGCAAGCTGACGAGC
Found at i:26268217 original size:72 final size:72
Alignment explanation
Indices: 26268112--26268387 Score: 329
Period size: 72 Copynumber: 3.8 Consensus size: 72
26268102 GTACATAAGC
* * * *
26268112 TGACAAGCATAAACGAGTGCAAGCAGACGAGCGTAAACGTATATAAGCTAACGAGCGTAAACGTG
1 TGACGAGCATAAACGTGTACAAGCTGACGAGCGTAAACGTATATAAGCTAACGAGCGTAAACGTG
26268177 TGCAAGT
66 TGCAAGT
* * * * ** *
26268184 TGATGAGCATAAATGTGTACAAGCTGACAAGCGTAAACGTATATAAGCTGACGATTGTAAACATG
1 TGACGAGCATAAACGTGTACAAGCTGACGAGCGTAAACGTATATAAGCTAACGAGCGTAAACGTG
*
26268249 TGTAAGT
66 TGCAAGT
* * *
26268256 TGACGAGCGTAAACGTGT-CAAGCTGACGAGCGTAAACGTATATAAGCTGACGAGCGTAAATGTG
1 TGACGAGCATAAACGTGTACAAGCTGACGAGCGTAAACGTATATAAGCTAACGAGCGTAAACGTG
26268320 TGCAAGT
66 TGCAAGT
* * * * * * * **
26268327 TGACGAGCGTAAATGTATATAAGCTGGCGAGCGTAAACATGTGCAAGCTAACGAGCGTAAA
1 TGACGAGCATAAACGTGTACAAGCTGACGAGCGTAAACGTATATAAGCTAACGAGCGTAAA
26268388 TGTATATAAG
Statistics
Matches: 173, Mismatches: 30, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
71 63 0.36
72 110 0.64
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21
Consensus pattern (72 bp):
TGACGAGCATAAACGTGTACAAGCTGACGAGCGTAAACGTATATAAGCTAACGAGCGTAAACGTG
TGCAAGT
Found at i:26268455 original size:24 final size:24
Alignment explanation
Indices: 26268132--26268459 Score: 184
Period size: 24 Copynumber: 13.7 Consensus size: 24
26268122 AAACGAGTGC
* *
26268132 AAGCAGACGAGCGTAAACGTAT-A
1 AAGCTGACGAGCGTAAATGTATGA
* * * *
26268155 TAAGCTAACGAGCGTAAACGTGTGC
1 -AAGCTGACGAGCGTAAATGTATGA
* * * *
26268180 AAGTTGATGAGCATAAATGTGT-A
1 AAGCTGACGAGCGTAAATGTATGA
* *
26268203 CAAGCTGACAAGCGTAAACGTAT-A
1 -AAGCTGACGAGCGTAAATGTATGA
** ** * *
26268227 TAAGCTGACGATTGTAAACATGTGT
1 -AAGCTGACGAGCGTAAATGTATGA
* * * *
26268252 AAGTTGACGAGCGTAAACGTGT-C
1 AAGCTGACGAGCGTAAATGTATGA
*
26268275 AAGCTGACGAGCGTAAACGTAT-A
1 AAGCTGACGAGCGTAAATGTATGA
* *
26268298 TAAGCTGACGAGCGTAAATGTGTGC
1 -AAGCTGACGAGCGTAAATGTATGA
*
26268323 AAGTTGACGAGCGTAAATGTAT-A
1 AAGCTGACGAGCGTAAATGTATGA
* ** * *
26268346 TAAGCTGGCGAGCGTAAACATGTGC
1 -AAGCTGACGAGCGTAAATGTATGA
*
26268371 AAGCTAACGAGCGTAAATGTAT-A
1 AAGCTGACGAGCGTAAATGTATGA
* * ** * *
26268394 TAAGCTAACAAGCGTAAACATGTGC
1 -AAGCTGACGAGCGTAAATGTATGA
* *
26268419 AAGTTGACAAGCGTAAATGTATGA
1 AAGCTGACGAGCGTAAATGTATGA
*
26268443 AAGCTGGCGAGCGTAAA
1 AAGCTGACGAGCGTAAA
26268460 ACACAATGAA
Statistics
Matches: 232, Mismatches: 63, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
23 20 0.09
24 212 0.91
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.22
Consensus pattern (24 bp):
AAGCTGACGAGCGTAAATGTATGA
Found at i:26270510 original size:18 final size:19
Alignment explanation
Indices: 26270484--26270519 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26270474 TTTTCTATTT
26270484 TTTTAATTTTTACTTTAAA
1 TTTTAATTTTTACTTTAAA
*
26270503 TTTT-ATTTTTATTTTAA
1 TTTTAATTTTTACTTTAA
26270520 TTTATCCCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTAATTTTTACTTTAAA
Found at i:26275174 original size:20 final size:18
Alignment explanation
Indices: 26275150--26275189 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26275140 CCAAAAAAAT
* *
26275150 AAAGAA-AATAAAATAAA
1 AAAGAAGAAAAAAAGAAA
26275167 AAAGAAGAAAAAAAGAAA
1 AAAGAAGAAAAAAAGAAA
26275185 AAAGA
1 AAAGA
26275190 GAGGTTGGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.05
Consensus pattern (18 bp):
AAAGAAGAAAAAAAGAAA
Found at i:26280105 original size:99 final size:98
Alignment explanation
Indices: 26279692--26280648 Score: 747
Period size: 99 Copynumber: 9.7 Consensus size: 98
26279682 TCTCCCTTAA
* * * * *
26279692 GTTACAGTGGAAAGGAGTAAAG-TTACAACACCAAATCCTATAC-CCCTGAAGTTGCAGTG-GGT
1 GTTACAGTGGAATGGAGTGAAGCTT-CAACAACAAATCCTAT-CTTCCTGAAGTTGCAGTGAAG-
* * * * *
26279754 CGGATTAAAGGC-AGAAGTAGAACTCAATGTCCCTAAG
63 CGGATTAAA--CTACAAGCAGATCTCAATGTCCTTGAG
**
26279791 GTTACAGTGGAATGGAGTGAAGCTT------CAAATCCTATCTTCCTGAAGTTGCAGTGAAGTAG
1 GTTACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGG
* * *
26279850 ATTAAA--ACAAGTAACGAATCTCAATCTCCCTGAG
66 ATTAAACTACAAG-CA-G-ATCTCAATGTCCTTGAG
* * * **
26279884 GTTACAGTGGAATGGAGTAAAG-TTACAACACCAAATCCTATAC--CCTTGAGGTTATAGTG-AG
1 GTTACAGTGGAATGGAGTGAAGCTT-CAACAACAAATCCTAT-CTTCC-TGAAGTTGCAGTGAAG
* *
26279945 TCGGATTAAAATGACAAAGCATATCTCAATGTCCTTGAG
63 -CGGATTAAACT-AC-AAGCAGATCTCAATGTCCTTGAG
*
26279984 GTTACAATGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGG
1 GTTACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGG
26280049 ATTAAAGCTACAAGCAGATCTCAATGTCCTTGAG
66 ATTAAA-CTACAAGCAGATCTCAATGTCCTTGAG
* * ** * *
26280083 ATTACAGTAGAAT-GACACGAAGCTTCAATAACAAATCCTATCTTCCTAAAGTTGCAGTGAAGCG
1 GTTACAGTGGAATGGA-GTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCG
* ** *
26280147 GATTAAAACAAGTAGTAGATCTCAATGTCCTTGAG
65 GATT-AAACTACAAGCAGATCTCAATGTCCTTGAG
* * * * * * * * * * * *
26280182 GTTACAGTGGAATTGAATGAAGCTACTACACCAAATCTTATATCCCTAAAGTTACAGTGGATCGG
1 GTTACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGG
* * * *
26280247 ATTAAAATA-AGTAACAGATCTCAATGTCCCTAAG
66 ATTAAACTACA--AGCAGATCTCAATGTCCTTGAG
* * * * * *
26280281 GTTACAGTGGAATGGAGTGAAG-TTACGACACCAAATCCTATAC-CCCTGAAGTTACGGTG-GGT
1 GTTACAGTGGAATGGAGTGAAGCTT-CAACAACAAATCCTAT-CTTCCTGAAGTTGCAGTGAAG-
* * * *
26280343 CGGATTAAAGCCAAAAGCAAAACTCAATGTCCTTGAG
63 CGGATTAAA-CTACAAGCAGATCTCAATGTCCTTGAG
* * * *
26280380 GTTACAGTGGAATGGAGTGAAGCTTTAATAACAAATCCTATCTTCCTGAAGTTGCAATGAAGCAG
1 GTTACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGG
* ** *
26280445 ATTAAAACAAGTAGCAAATCTCAATGTCCTTGAG
66 ATT-AAACTACAAGCAGATCTCAATGTCCTTGAG
* * * * ** *
26280479 GTTACAGTGGATTGGAGTGAAG-TTGCAACATCAAATCCCATAC-CCCTGAAGTTATAGTG-GGT
1 GTTACAGTGGAATGGAGTGAAGCTT-CAACAACAAATCCTAT-CTTCCTGAAGTTGCAGTGAAG-
* * * *
26280541 CGGATTAAAGCCAGAAGTAGATCTCAATGTCCCTGAG
63 CGGATTAAA-CTACAAGCAGATCTCAATGTCCTTGAG
* * * * *
26280578 GTTACAGTGGAATAGAGTGAAGCTTCAACAATAAATCCTATATTCCTAAAGTTGCAGTGAAGCGA
1 GTTACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGG
26280643 ATTAAA
66 ATTAAA
26280649 ACAAGGAGTA
Statistics
Matches: 693, Mismatches: 119, Indels: 92
0.77 0.13 0.10
Matches are distributed among these distances:
90 4 0.01
91 1 0.00
92 4 0.01
93 67 0.10
94 1 0.00
98 18 0.03
99 494 0.71
100 90 0.13
101 8 0.01
102 3 0.00
103 3 0.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (98 bp):
GTTACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGG
ATTAAACTACAAGCAGATCTCAATGTCCTTGAG
Found at i:26280404 original size:297 final size:295
Alignment explanation
Indices: 26279678--26280636 Score: 1113
Period size: 297 Copynumber: 3.2 Consensus size: 295
26279668 GTAACAAATA
* * *
26279678 TCAATCTCCCTTAA-GTTACAGTGGAAAGGAGTAAAGTTACAACACCAAATCCTATACCCCTGAA
1 TCAATGTCCC-TAAGGTTACAGTGGAATGGAGTGAAGTTACAACACCAAATCCTATACCCCTGAA
* * * * *
26279742 GTTGCAGTGGGTCGGATTAAAGGCAGAAGTAGAACTCAATGTCCCTAAGGTTACAGTGGAATGGA
65 GTTGCAGTGGGTCGGATTAAAGCCAAAAGCAGAACTCAATGTCCTTGAGGTTACAGTGGAATGGA
*
26279807 GTGAAGC-T--T--CAAATCCTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAACAAGTA-ACG
130 GTGAAGCTTAATAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCAGATTAAAACAAGTAGA-G
* * * *
26279866 AATCTCAATCTCCCTGAGGTTACAGTGGAATGGAGTAAAGTTACAACACCAAATCCTATACCCTT
194 -ATCTCAATGTCCTTGAGGTTACAGTGGAATTGAGTGAAGTTACAACACCAAATCCTATACCC-T
* * ** *
26279931 GAGGTTATAGT-GAGTCGGATTAAAATGACAAAGCATATC
257 GAAGTTATAGTGGA-TCGGATTAAAATAAGTAAGCAGATC
* * * * *
26279970 TCAATGTCCTTGAGGTTACAATGGAATGGAGTGAAGCTT-CAACAACAAATCCTAT-CTTCCTGA
1 TCAATGTCCCTAAGGTTACAGTGGAATGGAGTGAAG-TTACAACACCAAATCCTATAC-CCCTGA
* * * * * *
26280033 AGTTGCAGTGAAG-CGGATTAAAGCTACAAGCAGATCTCAATGTCCTTGAGATTACAGTAGAAT-
64 AGTTGCAGTG-GGTCGGATTAAAGCCAAAAGCAGAACTCAATGTCCTTGAGGTTACAGTGGAATG
** * *
26280096 GACACGAAGCTTCAATAACAAATCCTATCTTCCTAAAGTTGCAGTGAAGCGGATTAAAACAAGTA
128 GA-GTGAAGCTT-AATAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCAGATTAAAACAAGTA
* * * *
26280161 GTAGATCTCAATGTCCTTGAGGTTACAGTGGAATTGAATGAAGCTACTACACCAAATCTTATATC
191 G-AGATCTCAATGTCCTTGAGGTTACAGTGGAATTGAGTGAAGTTACAACACCAAATCCTATA-C
* *
26280226 CCTAAAGTTACAGTGGATCGGATTAAAATAAGTAA-CAGATC
254 CCTGAAGTTATAGTGGATCGGATTAAAATAAGTAAGCAGATC
*
26280267 TCAATGTCCCTAAGGTTACAGTGGAATGGAGTGAAGTTACGACACCAAATCCTATACCCCTGAAG
1 TCAATGTCCCTAAGGTTACAGTGGAATGGAGTGAAGTTACAACACCAAATCCTATACCCCTGAAG
* * *
26280332 TTACGGTGGGTCGGATTAAAGCCAAAAGCAAAACTCAATGTCCTTGAGGTTACAGTGGAATGGAG
66 TTGCAGTGGGTCGGATTAAAGCCAAAAGCAGAACTCAATGTCCTTGAGGTTACAGTGGAATGGAG
* *
26280397 TGAAGCTTTAATAACAAATCCTATCTTCCTGAAGTTGCAATGAAGCAGATTAAAACAAGTAGCAA
131 TGAAGC-TTAATAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCAGATTAAAACAAGTAG-AG
* * *
26280462 ATCTCAATGTCCTTGAGGTTACAGTGG-ATTGGAGTGAAGTTGCAACATCAAATCCCATACCCCT
194 ATCTCAATGTCCTTGAGGTTACAGTGGAATT-GAGTGAAGTTACAACACCAAATCCTATA-CCCT
* *** *
26280526 GAAGTTATAGTGGGTCGGATTAAAGCCAG-AAGTAGATC
257 GAAGTTATAGTGGATCGGATTAAAATAAGTAAGCAGATC
* * ** ** *
26280564 TCAATGTCCCTGAGGTTACAGTGGAATAGAGTGAAGCTT-CAACAATAAATCCTATATTCCTAAA
1 TCAATGTCCCTAAGGTTACAGTGGAATGGAGTGAAG-TTACAACACCAAATCCTATACCCCTGAA
26280628 GTTGCAGTG
65 GTTGCAGTG
26280637 AAGCGAATTA
Statistics
Matches: 559, Mismatches: 85, Indels: 41
0.82 0.12 0.06
Matches are distributed among these distances:
291 5 0.01
292 103 0.18
293 4 0.01
296 9 0.02
297 305 0.55
298 126 0.23
299 6 0.01
300 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (295 bp):
TCAATGTCCCTAAGGTTACAGTGGAATGGAGTGAAGTTACAACACCAAATCCTATACCCCTGAAG
TTGCAGTGGGTCGGATTAAAGCCAAAAGCAGAACTCAATGTCCTTGAGGTTACAGTGGAATGGAG
TGAAGCTTAATAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCAGATTAAAACAAGTAGAGAT
CTCAATGTCCTTGAGGTTACAGTGGAATTGAGTGAAGTTACAACACCAAATCCTATACCCTGAAG
TTATAGTGGATCGGATTAAAATAAGTAAGCAGATC
Found at i:26280650 original size:198 final size:198
Alignment explanation
Indices: 26279663--26280653 Score: 1083
Period size: 198 Copynumber: 5.0 Consensus size: 198
26279653 TTGTTACAAG
* * * * * * *
26279663 AACATGTAACAAATATCAATCTCCCTTAAGTTACAGTGGAAAGGAGTAAAGTTACAACACCAAAT
1 AACAAGTAACAAATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGTTACAACACCAAAT
* * * * *
26279728 CCTATACCCCTGAAGTTGCAGTGGGTCGGATTAAAGGCAGAAGTAGAACTCAATGTCCCTAAGGT
66 CCTATACCCCTGAAGTTACAGTGGGTCGGATTAAAGCCAGAAGTAGATCTCAATGTCCTTGAGGT
*
26279793 TACAGTGGAATGGAGTGAAGCTT------CAAATCCTATCTTCCTGAAGTTGCAGTGAAG-TAGA
131 TACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGA-A
26279851 TTAA
195 TTAA
* * *
26279855 AACAAGTAACGAATCTCAATCTCCCTGAGGTTACAGTGGAATGGAGTAAAGTTACAACACCAAAT
1 AACAAGTAACAAATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGTTACAACACCAAAT
* * * * * * *
26279920 CCTATACCCTTGAGGTTATAGTGAGTCGGATTAAAATGACA-AAGCATATCTCAATGTCCTTGAG
66 CCTATACCCCTGAAGTTACAGTGGGTCGGATT-AAA-GCCAGAAGTAGATCTCAATGTCCTTGAG
* *
26279984 GTTACAATGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGG
129 GTTACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGA
26280049 ATTAA
194 ATTAA
* * * * * * * ** * *
26280054 AGCTA-CAAGCAGATCTCAATGTCCTTGAGATTACAGTAGAAT-GACACGAAGCTT-CAATAACA
1 AACAAGTAA-CAAATCTCAATGTCCCTGAGGTTACAGTGGAATGGA-GTGAAG-TTACAACACCA
* * * * * * *
26280116 AATCCTAT-CTTCCTAAAGTTGCAGTGAAG-CGGATTAAAACAAGTAGTAGATCTCAATGTCCTT
63 AATCCTATAC-CCCTGAAGTTACAGTG-GGTCGGATTAAAGCCAGAAGTAGATCTCAATGTCCTT
* * * * * * * * * * * *
26280179 GAGGTTACAGTGGAATTGAATGAAGCTACTACACCAAATCTTATATCCCTAAAGTTACAGTGGAT
126 GAGGTTACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAG
*
26280244 CGGATTAA
191 CGAATTAA
* * * *
26280252 AATAAGTAACAGATCTCAATGTCCCTAAGGTTACAGTGGAATGGAGTGAAGTTACGACACCAAAT
1 AACAAGTAACAAATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGTTACAACACCAAAT
* * * * *
26280317 CCTATACCCCTGAAGTTACGGTGGGTCGGATTAAAGCCAAAAGCAAAACTCAATGTCCTTGAGGT
66 CCTATACCCCTGAAGTTACAGTGGGTCGGATTAAAGCCAGAAGTAGATCTCAATGTCCTTGAGGT
* * *
26280382 TACAGTGGAATGGAGTGAAGCTTTAATAACAAATCCTATCTTCCTGAAGTTGCAATGAAGC-AGA
131 TACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGA-A
26280446 TTAA
195 TTAA
* * * * *
26280450 AACAAGTAGCAAATCTCAATGTCCTTGAGGTTACAGTGGATTGGAGTGAAGTTGCAACATCAAAT
1 AACAAGTAACAAATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGTTACAACACCAAAT
* * *
26280515 CCCATACCCCTGAAGTTATAGTGGGTCGGATTAAAGCCAGAAGTAGATCTCAATGTCCCTGAGGT
66 CCTATACCCCTGAAGTTACAGTGGGTCGGATTAAAGCCAGAAGTAGATCTCAATGTCCTTGAGGT
* * * *
26280580 TACAGTGGAATAGAGTGAAGCTTCAACAATAAATCCTATATTCCTAAAGTTGCAGTGAAGCGAAT
131 TACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGAAT
26280645 TAA
196 TAA
26280648 AACAAG
1 AACAAG
26280654 GAGTAAATTG
Statistics
Matches: 653, Mismatches: 124, Indels: 38
0.80 0.15 0.05
Matches are distributed among these distances:
192 86 0.13
193 45 0.07
194 3 0.00
197 4 0.01
198 406 0.62
199 105 0.16
200 4 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (198 bp):
AACAAGTAACAAATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGTTACAACACCAAAT
CCTATACCCCTGAAGTTACAGTGGGTCGGATTAAAGCCAGAAGTAGATCTCAATGTCCTTGAGGT
TACAGTGGAATGGAGTGAAGCTTCAACAACAAATCCTATCTTCCTGAAGTTGCAGTGAAGCGAAT
TAA
Found at i:26280740 original size:82 final size:82
Alignment explanation
Indices: 26280603--26280766 Score: 292
Period size: 82 Copynumber: 2.0 Consensus size: 82
26280593 AGTGAAGCTT
*
26280603 CAACAATAAATCCTATATTCCTAAAGTTGCAGTGAAGCGAATTAAAACAAGGAGTAAATTGAAGC
1 CAACAACAAATCCTATATTCCTAAAGTTGCAGTGAAGCGAATTAAAACAAGGAGTAAATTGAAGC
26280668 CACAAGAACGAATCTCA
66 CACAAGAACGAATCTCA
* *
26280685 CAACAACAAATCCTATATTCCTGAAGTTGCAGTGAAGCGAATTAAAACAAGGAGTAGATTGAAGC
1 CAACAACAAATCCTATATTCCTAAAGTTGCAGTGAAGCGAATTAAAACAAGGAGTAAATTGAAGC
*
26280750 CGCAAGAACGAATCTCA
66 CACAAGAACGAATCTCA
26280767 TACACCTAAA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 78 1.00
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (82 bp):
CAACAACAAATCCTATATTCCTAAAGTTGCAGTGAAGCGAATTAAAACAAGGAGTAAATTGAAGC
CACAAGAACGAATCTCA
Found at i:26280896 original size:50 final size:50
Alignment explanation
Indices: 26280818--26281177 Score: 452
Period size: 50 Copynumber: 7.2 Consensus size: 50
26280808 CAAATCTTAT
* * *
26280818 AAGCTGTAGAGGAGCAGATTGAAGCCGCAAGGGTGAATCTTATACACCTA
1 AAGCTGTAGAGGGGCAGATTGAAGCCGCAAGGGCGAATCTTATACCCCTA
*
26280868 AAACTGTAGAGGGGCAGATTGAAGCCGCAAGGGCGAATCTTATACCCCTA
1 AAGCTGTAGAGGGGCAGATTGAAGCCGCAAGGGCGAATCTTATACCCCTA
** *
26280918 AAGCTGTAGAGGGGCAGATTGAAGCCGCAAGGGAAAATCTTATACACCTA
1 AAGCTGTAGAGGGGCAGATTGAAGCCGCAAGGGCGAATCTTATACCCCTA
* * * * * *
26280968 AAGCTATAAAGGGGCATATTAAAGCCTGTAAGGGTGAATCTTATACCCCTA
1 AAGCTGTAGAGGGGCAGATTGAAGCC-GCAAGGGCGAATCTTATACCCCTA
* * * * * *
26281019 AAGCTGTAGAGGAGCAGATTAAAGACGCAAGAGCGAATCTTATACACTTA
1 AAGCTGTAGAGGGGCAGATTGAAGCCGCAAGGGCGAATCTTATACCCCTA
* * * * *
26281069 AAGCTATAAAGGGGCAAATTGAAGCCACAAGAGCGAATCTTATACCCCTA
1 AAGCTGTAGAGGGGCAGATTGAAGCCGCAAGGGCGAATCTTATACCCCTA
** *
26281119 AAGCTGTAGAGGGGCAGATTGAAG-CATAAGGACGAATCTTATACCCCTA
1 AAGCTGTAGAGGGGCAGATTGAAGCCGCAAGGGCGAATCTTATACCCCTA
*
26281168 AAGTTGTAGA
1 AAGCTGTAGA
26281178 AAAGAGAACC
Statistics
Matches: 267, Mismatches: 42, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
49 31 0.12
50 195 0.73
51 41 0.15
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.20
Consensus pattern (50 bp):
AAGCTGTAGAGGGGCAGATTGAAGCCGCAAGGGCGAATCTTATACCCCTA
Found at i:26281055 original size:151 final size:150
Alignment explanation
Indices: 26280734--26281177 Score: 528
Period size: 151 Copynumber: 3.0 Consensus size: 150
26280724 AATTAAAACA
* * * * *
26280734 AGGAGTAGATTGAAGCCGCAAGAACGAATCTCATACACCTAAAGTTGTAGAGGGGCATATTGAAG
1 AGGAGCAGATTGAAGCCGCAAGAGCGAATCTTATACACCTAAAGCTGTAGAGGGGCAAATTGAAG
* *
26280799 CCGCAA-GGACAAATC-T-T--A--T-AAGCTGTAGAGGAGCAGATTGAAGCCGCAAGGGTGAAT
66 CCGCAAGGGA-AAATCTTATACACCTAAAGCTGTAGAGGGGCAGATTGAAGCCGTAAGGGTGAAT
* *
26280856 CTTATACACCTAAAACTGTAG
130 CTTATACCCCTAAAGCTGTAG
* * * *
26280877 AGGGGCAGATTGAAGCCGCAAGGGCGAATCTTATACCCCTAAAGCTGTAGAGGGGCAGATTGAAG
1 AGGAGCAGATTGAAGCCGCAAGAGCGAATCTTATACACCTAAAGCTGTAGAGGGGCAAATTGAAG
* * * *
26280942 CCGCAAGGGAAAATCTTATACACCTAAAGCTATAAAGGGGCATATTAAAGCCTGTAAGGGTGAAT
66 CCGCAAGGGAAAATCTTATACACCTAAAGCTGTAGAGGGGCAGATTGAAGCC-GTAAGGGTGAAT
26281007 CTTATACCCCTAAAGCTGTAG
130 CTTATACCCCTAAAGCTGTAG
* * * * *
26281028 AGGAGCAGATTAAAGACGCAAGAGCGAATCTTATACACTTAAAGCTATAAAGGGGCAAATTGAAG
1 AGGAGCAGATTGAAGCCGCAAGAGCGAATCTTATACACCTAAAGCTGTAGAGGGGCAAATTGAAG
* * ** * * **
26281093 CCACAAGAGCGAATCTTATACCCCTAAAGCTGTAGAGGGGCAGATTGAAG-CATAAGGACGAATC
66 CCGCAAGGGAAAATCTTATACACCTAAAGCTGTAGAGGGGCAGATTGAAGCCGTAAGGGTGAATC
*
26281157 TTATACCCCTAAAGTTGTAG
131 TTATACCCCTAAAGCTGTAG
26281177 A
1 A
26281178 AAAGAGAACC
Statistics
Matches: 254, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
143 68 0.27
144 4 0.02
145 1 0.00
147 1 0.00
149 31 0.12
150 22 0.09
151 127 0.50
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.20
Consensus pattern (150 bp):
AGGAGCAGATTGAAGCCGCAAGAGCGAATCTTATACACCTAAAGCTGTAGAGGGGCAAATTGAAG
CCGCAAGGGAAAATCTTATACACCTAAAGCTGTAGAGGGGCAGATTGAAGCCGTAAGGGTGAATC
TTATACCCCTAAAGCTGTAG
Found at i:26281381 original size:10 final size:10
Alignment explanation
Indices: 26281366--26281408 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
26281356 GTCTGGCCCT
26281366 AAACAAAAAA
1 AAACAAAAAA
*
26281376 AAAC-AAAAC
1 AAACAAAAAA
*
26281385 AAACAAAATA
1 AAACAAAAAA
26281395 AAACAAACAAA
1 AAACAAA-AAA
26281406 AAA
1 AAA
26281409 TCCTTTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
9 8 0.30
10 14 0.52
11 5 0.19
ACGTcount: A:0.84, C:0.14, G:0.00, T:0.02
Consensus pattern (10 bp):
AAACAAAAAA
Found at i:26281390 original size:19 final size:18
Alignment explanation
Indices: 26281366--26281405 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
26281356 GTCTGGCCCT
26281366 AAACAAAAAAAAACAAAAC
1 AAACAAAAAAAAAC-AAAC
*
26281385 AAACAAAATAAAACAAAC
1 AAACAAAAAAAAACAAAC
26281403 AAA
1 AAA
26281406 AAATCCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.82, C:0.15, G:0.00, T:0.03
Consensus pattern (18 bp):
AAACAAAAAAAAACAAAC
Found at i:26281397 original size:14 final size:14
Alignment explanation
Indices: 26281375--26281406 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26281365 TAAACAAAAA
26281375 AAAACAAAACAAAC
1 AAAACAAAACAAAC
*
26281389 AAAATAAAACAAAC
1 AAAACAAAACAAAC
26281403 AAAA
1 AAAA
26281407 AATCCTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.16, G:0.00, T:0.03
Consensus pattern (14 bp):
AAAACAAAACAAAC
Found at i:26281857 original size:2 final size:2
Alignment explanation
Indices: 26281850--26281897 Score: 57
Period size: 2 Copynumber: 25.5 Consensus size: 2
26281840 ATTGTTTTTC
* *
26281850 TA TA TA TA TA TA TA -A TA TA -A AA TT TA TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26281889 TA TA TA TA T
1 TA TA TA TA T
26281898 TATTTTTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
1 3 0.08
2 37 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26282757 original size:18 final size:18
Alignment explanation
Indices: 26282736--26282770 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26282726 TTTTTGTTTT
26282736 TTTTATTTTTACTTTAAA
1 TTTTATTTTTACTTTAAA
* *
26282754 TTTTGTTTTTATTTTAA
1 TTTTATTTTTACTTTAA
26282771 TTTAACCCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTTATTTTTACTTTAAA
Found at i:26284699 original size:81 final size:81
Alignment explanation
Indices: 26284564--26284726 Score: 326
Period size: 81 Copynumber: 2.0 Consensus size: 81
26284554 CCTAAGAATA
26284564 AATATATTAGGAAATAATTACATTATGTATTAGTATTTTTGTGATAGTTTTCTAATATAAATTAT
1 AATATATTAGGAAATAATTACATTATGTATTAGTATTTTTGTGATAGTTTTCTAATATAAATTAT
26284629 TAACTTACGTCCATGT
66 TAACTTACGTCCATGT
26284645 AATATATTAGGAAATAATTACATTATGTATTAGTATTTTTGTGATAGTTTTCTAATATAAATTAT
1 AATATATTAGGAAATAATTACATTATGTATTAGTATTTTTGTGATAGTTTTCTAATATAAATTAT
26284710 TAACTTACGTCCATGT
66 TAACTTACGTCCATGT
26284726 A
1 A
26284727 TTCCTTGTAA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (81 bp):
AATATATTAGGAAATAATTACATTATGTATTAGTATTTTTGTGATAGTTTTCTAATATAAATTAT
TAACTTACGTCCATGT
Found at i:26285898 original size:12 final size:11
Alignment explanation
Indices: 26285877--26285906 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
26285867 TAGACCTTAT
26285877 TATATTAAATA
1 TATATTAAATA
26285888 TATATTCAAATA
1 TATATT-AAATA
26285900 TATATTA
1 TATATTA
26285907 TCTATTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (11 bp):
TATATTAAATA
Found at i:26286181 original size:17 final size:16
Alignment explanation
Indices: 26286161--26286193 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
26286151 AATATCAATT
26286161 TTTTTATAATTTATTTA
1 TTTTTATAATTT-TTTA
26286178 TTTTTATAATTTTTTA
1 TTTTTATAATTTTTTA
26286194 ATTGAAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTATAATTTTTTA
Found at i:26293229 original size:17 final size:17
Alignment explanation
Indices: 26293209--26293241 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26293199 TTTAAGGACT
26293209 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
26293226 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
26293242 TAAGTGTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:26294493 original size:60 final size:58
Alignment explanation
Indices: 26294340--26294622 Score: 207
Period size: 60 Copynumber: 4.8 Consensus size: 58
26294330 AGAGTTTAAC
* * * * * **
26294340 GTAATTTTGGAAAGTTTTAGGGGTAAAAATGTCA-TTTT-AGAAGTTTGGGTGTTAAAAT
1 GTAATTTTTGAAAGTTTGA-GGGTCAAAATGTGATTTTTGAAAAGTTTGGG-GGCAAAAT
* * * *
26294398 GTGATTTTTGAAAGTTTG-GGGGCAAAAATGTGATTTTTGAGAAGTTTGGGGGCAAATTT
1 GTAATTTTTGAAAGTTTGAGGGTC-AAAATGTGATTTTTGAAAAGTTTGGGGGCAAA-AT
* **
26294457 GTAATTTTTGATAAGTTTGAGGGTCAAAATGTGATTTTAGAAAAGTTTAAGGGCAAAAAT
1 GTAATTTTTGA-AAGTTTGAGGGTCAAAATGTGATTTTTGAAAAGTTTGGGGGC-AAAAT
* * * ** * **
26294517 GTAATTTTAGAAAAGTTTAAGGGTTAAAATGCAATTTTGGAAAAGTTTAGGGGTTAAAAT
1 GTAATTTTTG-AAAGTTTGAGGGTCAAAATGTGATTTTTGAAAAGTTT-GGGGGCAAAAT
* * * *
26294577 ATAA-TTTTGAAAAAGTTTGAGGGTC-AAATATGATTTATGGAAAGTT
1 GTAATTTTTG--AAAGTTTGAGGGTCAAAATGTGATTTTTGAAAAGTT
26294623 CAGGGACCTT
Statistics
Matches: 179, Mismatches: 36, Indels: 19
0.76 0.15 0.08
Matches are distributed among these distances:
56 3 0.02
57 8 0.04
58 23 0.13
59 41 0.23
60 94 0.53
61 10 0.06
ACGTcount: A:0.35, C:0.02, G:0.25, T:0.37
Consensus pattern (58 bp):
GTAATTTTTGAAAGTTTGAGGGTCAAAATGTGATTTTTGAAAAGTTTGGGGGCAAAAT
Found at i:26294553 original size:90 final size:89
Alignment explanation
Indices: 26294380--26294604 Score: 224
Period size: 90 Copynumber: 2.5 Consensus size: 89
26294370 GTCATTTTAG
* * * *
26294380 AAGTTTG-GGTGTTAAAATGTGATTTTTG-AAAGTTTGGGGGCAAAAATGTGATTTTTGAGAAGT
1 AAGTTTGAGG-GTTAAAATGTGA-TTTTGAAAAGTTTGAGGGCAAAAATGTAATTTTAGAAAAGT
* * * * *
26294443 TTGGGGGCAAATTTGTAATTTTTGAT
64 TTAGGGGCAAATATGCAATTTTGGAA
* *
26294469 AAGTTTGAGGGTCAAAATGTGATTTTAGAAAAGTTTAAGGGCAAAAATGTAATTTTAGAAAAGTT
1 AAGTTTGAGGGTTAAAATGTGATTTT-GAAAAGTTTGAGGGCAAAAATGTAATTTTAGAAAAGTT
**
26294534 TAAGGGTTAAA-ATGCAATTTTGGAA
65 T-AGGGGCAAATATGCAATTTTGGAA
* *
26294559 AAGTTT-AGGGGTTAAAATATAATTTTGAAAAAGTTTGAGGGTCAAA
1 AAGTTTGA-GGGTTAAAATGTGATTTTG-AAAAGTTTGAGGG-CAAA
26294605 TATGATTTAT
Statistics
Matches: 112, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
88 4 0.04
89 21 0.19
90 77 0.69
91 10 0.09
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.36
Consensus pattern (89 bp):
AAGTTTGAGGGTTAAAATGTGATTTTGAAAAGTTTGAGGGCAAAAATGTAATTTTAGAAAAGTTT
AGGGGCAAATATGCAATTTTGGAA
Found at i:26294589 original size:29 final size:29
Alignment explanation
Indices: 26294340--26294599 Score: 186
Period size: 30 Copynumber: 8.7 Consensus size: 29
26294330 AGAGTTTAAC
*
26294340 GTAATTTTGGAAAGTTTTAGGGGTAAAAAT
1 GTAATTTTGAAAAG-TTTAGGGGTAAAAAT
* * *
26294370 GTCATTTT-AGAAGTTT-GGGTGTTAAAAT
1 GTAATTTTGAAAAGTTTAGGG-GTAAAAAT
* * *
26294398 GTGATTTTTG-AAAGTTTGGGGGCAAAAAT
1 GT-AATTTTGAAAAGTTTAGGGGTAAAAAT
* * * * **
26294427 GTGATTTTTGAGAAGTTTGGGGGCAAATTT
1 GT-AATTTTGAAAAGTTTAGGGGTAAAAAT
* *
26294457 GTAATTTTTGATAAGTTT-GAGGGTCAAAAT
1 GTAA-TTTTGAAAAGTTTAG-GGGTAAAAAT
* * *
26294487 GTGATTTTAGAAAAGTTTAAGGGCAAAAAT
1 GTAATTTT-GAAAAGTTTAGGGGTAAAAAT
* *
26294517 GTAATTTTAGAAAAGTTTAAGGGTTAAAAT
1 GTAATTTT-GAAAAGTTTAGGGGTAAAAAT
* *
26294547 GCAATTTTGGAAAAGTTTAGGGGTTAAAAT
1 GTAATTTT-GAAAAGTTTAGGGGTAAAAAT
*
26294577 ATAATTTTGAAAAAGTTTGAGGG
1 GTAATTTTG-AAAAGTTT-AGGG
26294600 TCAAATATGA
Statistics
Matches: 188, Mismatches: 31, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
27 3 0.02
28 12 0.06
29 36 0.19
30 133 0.71
31 4 0.02
ACGTcount: A:0.35, C:0.02, G:0.26, T:0.37
Consensus pattern (29 bp):
GTAATTTTGAAAAGTTTAGGGGTAAAAAT
Found at i:26294620 original size:29 final size:28
Alignment explanation
Indices: 26294462--26294622 Score: 119
Period size: 30 Copynumber: 5.4 Consensus size: 28
26294452 AATTTGTAAT
* * *
26294462 TTTTGATAAGTTTGAGGGTCAAAATGTGA
1 TTTTGAAAAGTTTAAGGGTC-AAATATGA
*
26294491 TTTTAGAAAAGTTTAAGGG-CAAAAATGTAA
1 TTTT-GAAAAGTTTAAGGGTCAAATATG--A
*
26294521 TTTTAGAAAAGTTTAAGGGTTAAA-ATGCAA
1 TTTT-GAAAAGTTTAAGGGTCAAATATG--A
* * *
26294551 TTTTGGAAAAGTTTAGGGGTTAAAATATAA
1 TTTT-GAAAAGTTTAAGGG-TCAAATATGA
*
26294581 TTTTGAAAAAGTTTGAGGGTCAAATATGA
1 TTTTG-AAAAGTTTAAGGGTCAAATATGA
*
26294610 TTTATGGAAAGTT
1 TTT-TGAAAAGTT
26294623 CAGGGACCTT
Statistics
Matches: 109, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
28 5 0.05
29 23 0.21
30 72 0.66
31 7 0.06
32 2 0.02
ACGTcount: A:0.39, C:0.02, G:0.23, T:0.35
Consensus pattern (28 bp):
TTTTGAAAAGTTTAAGGGTCAAATATGA
Found at i:26296928 original size:50 final size:50
Alignment explanation
Indices: 26296754--26297543 Score: 575
Period size: 49 Copynumber: 16.0 Consensus size: 50
26296744 GGGTATAAGA
* * * * * * * **
26296754 TTCGCCATTGTGGCTTCAATCTTTCCCATCAC-TTTTCTAAGGTGCTAGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTAAGGTACCGGG
* * * * ** * ** *
26296803 TTTGCCGTTGCGGTCTAAACCTTTCCCTTTATGTCTTC-ATGGTATTGGA
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTAAGGTACCGGG
* * * *
26296852 TTCGCCATTGCGACCTCAATCC-TTCCCATCACATCTTCTAAGGTACCAGG
1 TTCGCCGTTGCGGCCTCAA-CCTTTCCCTTCACATCTTCTAAGGTACCGGG
* * *** *
26296902 TTCACCGTTGTGGCCTCAACCTTTCCCTTTGTATCTTCGT--GGTACTGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTC-TAAGGTACCGGG
* *** *
26296951 TTCGCCGTTACGGCCTCAACCTTTCCCTTTGTATCTTCGT--GGTACCAGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTC-TAAGGTACCGGG
* * * * * *
26297000 TTCACCGTTGCGACCTCAATCTTTCTCATCACATCTTCTTAGGTACCGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTAAGGTACCGGG
** * * * ** * *
26297050 TTCATCGTCGCGACCTCAATCTTTCCCTTCGTATCTTC-ATGGTATCGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTAAGGTACCGGG
* * * *
26297099 TTCGCCGTTGCGACCTCAACCATTCCCATCACATCTTC-ATAGGTATCGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTA-AGGTACCGGG
* * ** * *
26297149 TTCGCCATTGTGGCCTCAACCTTTCCCTTCGTATCTTC-ATGGTATCGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTAAGGTACCGGG
* * * *
26297198 TTCGCCGTTGTGACCTCAACTTTTCCCATCACATCTTC-ATAGGTACCGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTA-AGGTACCGGG
* * * * *
26297248 TTCGCCGTTGTGGCCTCAACCTTTCCTTTCACATCTTTTAAGGTACTGGA
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTAAGGTACCGGG
** * * * *
26297298 TTCGTTGTTGCAGCCTCAATCC-TTCCTTTCATC-TCTTC-ATGGTACTGGG
1 TTCGCCGTTGCGGCCTCAA-CCTTTCCCTTCA-CATCTTCTAAGGTACCGGG
* *
26297347 TTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTAAGGTACCGGG
* ** ** * **
26297397 TTCGCCGTTACAACCTCAACCTTTCCCTTCGTATCTTC-ATGGTATTGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTAAGGTACCGGG
* * * * *
26297446 TTTGCCGTTGCGGCCTCAACCTTTCCCATCATATCTTCTTAGGTATCGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTAAGGTACCGGG
* * * *
26297496 TTCGTCGTTGTGGCCTCAACCTTTCCCTTCACATCTTTTAAAGTACCG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTAAGGTACCG
26297544 AATTCGCTAT
Statistics
Matches: 586, Mismatches: 139, Indels: 31
0.78 0.18 0.04
Matches are distributed among these distances:
48 4 0.01
49 293 0.50
50 284 0.48
51 5 0.01
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.36
Consensus pattern (50 bp):
TTCGCCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCTAAGGTACCGGG
Found at i:26296931 original size:99 final size:99
Alignment explanation
Indices: 26296754--26297532 Score: 649
Period size: 99 Copynumber: 7.9 Consensus size: 99
26296744 GGGTATAAGA
* * * * * * ** * **
26296754 TTCGCCATTGTGGCTTCAATCTTTCCCATCAC-TTTTCTAAGGTGCTAGGTTTGCCGTTGCGGTC
1 TTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGCGACC
* * * * *
26296818 TAAACCTTTCCCTTTATGTCTTCATGGTATTGGA
66 TCAACCTTTCCCTTCATATCTTCATGGTACTGGG
* * * * * *
26296852 TTCGCCATTGCGACCTCAATCC-TTCCCATCACATCTTCTAAGGTACCAGGTTCACCGTTGTGGC
1 TTCGCCGTTGCGGCCTCAA-CCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGCGAC
** *
26296916 CTCAACCTTTCCCTTTGTATCTTCGTGGTACTGGG
65 CTCAACCTTTCCCTTCATATCTTCATGGTACTGGG
* * *** * *
26296951 TTCGCCGTTACGGCCTCAACCTTTCCCTTTGTATCTTCGT--GGTACCAGGTTCACCGTTGCGAC
1 TTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTC-TAAGGTACCGGGTTCGCCGTTGCGAC
* * * * * *
26297014 CTCAATCTTTCTCATCACATCTTCTTAGGTACCGGG
65 CTCAACCTTTCCCTTCATATCTTCAT-GGTACTGGG
** * * * * ** * *
26297050 TTCATCGTCGCGACCTCAATCTTTCCCTTCGTATCTTC-ATGGTATCGGGTTCGCCGTTGCGACC
1 TTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGCGACC
* * *
26297114 TCAACCATTCCCATCACATCTTCATAGGTA-TCGGG
66 TCAACCTTTCCCTTCATATCTTCAT-GGTACT-GGG
* * * ** * * *
26297149 TTCGCCATTGTGGCCTCAACCTTTCCCTTCGTATCTTC-ATGGTATCGGGTTCGCCGTTGTGACC
1 TTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGCGACC
* * * *
26297213 TCAACTTTTCCCATCACATCTTCATAGGTACCGGG
66 TCAACCTTTCCCTTCATATCTTCAT-GGTACTGGG
* ** * * * **
26297248 TTCGCCGTTGTGGCCTCAACCTTTCCTTTCACATCTTTTAAGGTACTGGATTCGTTGTTGC-AGC
1 TTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGCGA-C
* *
26297312 CTCAATCC-TTCCTTTCATCTCTTCATGGTACTGGG
65 CTCAA-CCTTTCCCTTCATATCTTCATGGTACTGGG
* * *
26297347 TTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGGGTTCGCCGTTACAACC
1 TTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGCGACC
* *
26297412 TCAACCTTTCCCTTCGTATCTTCATGGTATTGGG
66 TCAACCTTTCCCTTCATATCTTCATGGTACTGGG
* * * * * * *
26297446 TTTGCCGTTGCGGCCTCAACCTTTCCCATCATATCTTCTTAGGTATCGGGTTCGTCGTTGTGGCC
1 TTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGCGACC
*
26297511 TCAACCTTTCCCTTCACATCTT
66 TCAACCTTTCCCTTCATATCTT
26297533 TTAAAGTACC
Statistics
Matches: 565, Mismatches: 102, Indels: 27
0.81 0.15 0.04
Matches are distributed among these distances:
98 70 0.12
99 457 0.81
100 37 0.07
101 1 0.00
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.36
Consensus pattern (99 bp):
TTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGCGACC
TCAACCTTTCCCTTCATATCTTCATGGTACTGGG
Found at i:26297267 original size:149 final size:149
Alignment explanation
Indices: 26296754--26297532 Score: 628
Period size: 148 Copynumber: 5.2 Consensus size: 149
26296744 GGGTATAAGA
* * * * * ** * **
26296754 TTCGCCATTGTGGCTTCAATCTTTCCCATCAC-TTTTC-TAAGGTGCTAGGTTTGCCGTTGCGGT
1 TTCGCCGTTGTGGCCTCAACCTTTCCCATCACATCTTCAT-AGGTACCGGGTTCGCCGTTGCGAC
* * ** * * * * *
26296817 CTAAACCTTTCCCTTTATGTCTTCAT-GGTATTGGATTCGCCATTGCGACCTCAATCC-TTCCCA
65 CTCAACCTTTCCCTTCACATCTTCATAGGTATCGGGTTCGCCGTTGCGGCCTCAA-CCTTTCCCT
* * * *
26296880 TCACATCTTCTAAGGTACCAGG
129 TCATATCTTC-ATGGTATCGGG
* * *** * * * *
26296902 TTCACCGTTGTGGCCTCAACCTTTCCCTTTGTATCTTCGT-GGTACTGGGTTCGCCGTTACGGCC
1 TTCGCCGTTGTGGCCTCAACCTTTCCCATCACATCTTCATAGGTACCGGGTTCGCCGTTGCGACC
*** * * * * * * * *
26296966 TCAACCTTTCCCTTTGTATCTTCGT-GGTACCAGGTTCACCGTTGCGACCTCAATCTTTCTCATC
66 TCAACCTTTCCCTTCACATCTTCATAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTC
* * *
26297030 ACATCTTCTTAGGTACCGGG
131 ATATCTTCAT-GGTATCGGG
** * * * * * ** *
26297050 TTCATCGTCGCGACCTCAATCTTTCCCTTCGTATCTTCAT-GGTATCGGGTTCGCCGTTGCGACC
1 TTCGCCGTTGTGGCCTCAACCTTTCCCATCACATCTTCATAGGTACCGGGTTCGCCGTTGCGACC
* * * *
26297114 TCAACCATTCCCATCACATCTTCATAGGTATCGGGTTCGCCATTGTGGCCTCAACCTTTCCCTTC
66 TCAACCTTTCCCTTCACATCTTCATAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTC
*
26297179 GTATCTTCATGGTATCGGG
131 ATATCTTCATGGTATCGGG
* * * *
26297198 TTCGCCGTTGTGACCTCAACTTTTCCCATCACATCTTCATAGGTACCGGGTTCGCCGTTGTGGCC
1 TTCGCCGTTGTGGCCTCAACCTTTCCCATCACATCTTCATAGGTACCGGGTTCGCCGTTGCGACC
* * * ** * *
26297263 TCAACCTTTCCTTTCACATCTT-TTAAGGTA-CTGGATTCGTTGTTGCAGCCTCAATCC-TTCCT
66 TCAACCTTTCCCTTCACATCTTCAT-AGGTATC-GGGTTCGCCGTTGCGGCCTCAA-CCTTTCCC
*
26297325 TTCATCTCTTCATGGTA-CTGGG
128 TTCATATCTTCATGGTATC-GGG
* * * *
26297347 TTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGGGTTCGCCGTTACAACC
1 TTCGCCGTTGTGGCCTCAACCTTTCCCATCACATCTTCATAGGTACCGGGTTCGCCGTTGCGACC
** * * *
26297412 TCAACCTTTCCCTTCGTATCTTCAT-GGTATTGGGTTTGCCGTTGCGGCCTCAACCTTTCCCATC
66 TCAACCTTTCCCTTCACATCTTCATAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTC
*
26297476 ATATCTTCTTAGGTATCGGG
131 ATATCTTCAT-GGTATCGGG
* *
26297496 TTCGTCGTTGTGGCCTCAACCTTTCCCTTCACATCTT
1 TTCGCCGTTGTGGCCTCAACCTTTCCCATCACATCTT
26297533 TTAAAGTACC
Statistics
Matches: 507, Mismatches: 109, Indels: 29
0.79 0.17 0.04
Matches are distributed among these distances:
147 3 0.01
148 258 0.51
149 241 0.48
150 5 0.01
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.36
Consensus pattern (149 bp):
TTCGCCGTTGTGGCCTCAACCTTTCCCATCACATCTTCATAGGTACCGGGTTCGCCGTTGCGACC
TCAACCTTTCCCTTCACATCTTCATAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTC
ATATCTTCATGGTATCGGG
Found at i:26297382 original size:248 final size:245
Alignment explanation
Indices: 26296828--26297571 Score: 897
Period size: 248 Copynumber: 3.0 Consensus size: 245
26296818 TAAACCTTTC
* * *
26296828 CCTTT-ATGTCTTCATGGTATTGGATTCGCCATTGCGACCTCAATCCTTCCCATCACATCTTCTA
1 CCTTTCATATCTTCATGGTA-TGGGTTCGCCGTTGCGACCTCAA-CCTTCCCATCACATCTTCT-
* * * *
26296892 AGGTACCAGGTTCACCGTTGTGGCCTCAACCTTTCCCTTTGTATCTTCGTGGTA-CTGGGTTCGC
63 AGGTACCGGGTTCGCCGTTGTGGCCTCAACCTTTCCCTTCGTATCTTCATGGTATC-GGGTTCGC
* * ** * * * * * *
26296956 CGTTACGGCCTCAACCTTTCCCTTTGTATCTTCGT-GGTACCAGGTTCACCGTTGCGACCTCAAT
127 CGTTGCGGCCTCAACCTTTCCCATCATATCTTCATAGGTACCGGGTTCGCCGTTGTGGCCTCAAC
* * * * * *
26297020 CTTT-CTCATCACATCTTCTT-AGGTACCGGGTTCATCGTCGC-GACCTCAATCTTT
192 CTTTCCT-TTCACATCTT-TTAAGGTACCGGATTCGTTGTTGCAG-CCTCAATCCTT
* *
26297074 CCCTTCGTATCTTCATGGTATCGGGTTCGCCGTTGCGACCTCAACCATTCCCATCACATCTTCAT
1 CCTTTCATATCTTCATGGTAT-GGGTTCGCCGTTGCGACCTCAACC-TTCCCATCACATCTTC-T
* *
26297139 AGGTATCGGGTTCGCCATTGTGGCCTCAACCTTTCCCTTCGTATCTTCATGGTATCGGGTTCGCC
63 AGGTACCGGGTTCGCCGTTGTGGCCTCAACCTTTCCCTTCGTATCTTCATGGTATCGGGTTCGCC
* * * *
26297204 GTTGTGACCTCAACTTTTCCCATCACATCTTCATAGGTACCGGGTTCGCCGTTGTGGCCTCAACC
128 GTTGCGGCCTCAACCTTTCCCATCATATCTTCATAGGTACCGGGTTCGCCGTTGTGGCCTCAACC
*
26297269 TTTCCTTTCACATCTTTTAAGGTACTGGATTCGTTGTTGCAGCCTCAATCCTT
193 TTTCCTTTCACATCTTTTAAGGTACCGGATTCGTTGTTGCAGCCTCAATCCTT
* *
26297322 CCTTTCATCTCTTCATGGTACTGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTT
1 CCTTTCATATCTTCATGGTA-TGGGTTCGCCGTTGCGACCTCAACC-TTCCCATCACATCTTC-T
**** * *
26297387 AGGTACCGGGTTCGCCGTTACAACCTCAACCTTTCCCTTCGTATCTTCATGGTATTGGGTTTGCC
63 AGGTACCGGGTTCGCCGTTGTGGCCTCAACCTTTCCCTTCGTATCTTCATGGTATCGGGTTCGCC
* * *
26297452 GTTGCGGCCTCAACCTTTCCCATCATATCTTCTTAGGTATCGGGTTCGTCGTTGTGGCCTCAACC
128 GTTGCGGCCTCAACCTTTCCCATCATATCTTCATAGGTACCGGGTTCGCCGTTGTGGCCTCAACC
* * * * *
26297517 TTTCCCTTCACATCTTTTAAAGTACCGAATTCGCTATTGCAGCCTCAATCCTT
193 TTTCCTTTCACATCTTTTAAGGTACCGGATTCGTTGTTGCAGCCTCAATCCTT
26297570 CC
1 CC
26297572 CTGTCAAACC
Statistics
Matches: 429, Mismatches: 59, Indels: 18
0.85 0.12 0.04
Matches are distributed among these distances:
246 7 0.02
247 132 0.31
248 286 0.67
249 4 0.01
ACGTcount: A:0.16, C:0.31, G:0.18, T:0.35
Consensus pattern (245 bp):
CCTTTCATATCTTCATGGTATGGGTTCGCCGTTGCGACCTCAACCTTCCCATCACATCTTCTAGG
TACCGGGTTCGCCGTTGTGGCCTCAACCTTTCCCTTCGTATCTTCATGGTATCGGGTTCGCCGTT
GCGGCCTCAACCTTTCCCATCATATCTTCATAGGTACCGGGTTCGCCGTTGTGGCCTCAACCTTT
CCTTTCACATCTTTTAAGGTACCGGATTCGTTGTTGCAGCCTCAATCCTT
Found at i:26299630 original size:3 final size:3
Alignment explanation
Indices: 26299622--26299648 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
26299612 GGTCATCCCT
26299622 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
26299649 AATATCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:26300792 original size:11 final size:11
Alignment explanation
Indices: 26300776--26300806 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
26300766 GTGGCATAAA
26300776 TGATGTCATAG
1 TGATGTCATAG
26300787 TGATGTCATAG
1 TGATGTCATAG
26300798 TGATGTCAT
1 TGATGTCAT
26300807 TATCTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.39
Consensus pattern (11 bp):
TGATGTCATAG
Found at i:26302586 original size:107 final size:107
Alignment explanation
Indices: 26302400--26302613 Score: 401
Period size: 107 Copynumber: 2.0 Consensus size: 107
26302390 AAATATTCTT
26302400 GCATAACAAATTTAAGTCATAATCATTAAAGTGAAAACCAACAAACAACTTGCAACCATGATTAA
1 GCATAACAAATTTAAGTCATAATCATTAAAGTGAAAACCAACAAACAACTTGCAACCATGATTAA
26302465 AAAACAATAAAAGAAAGAAATAGATAAGAGAAAGAAAGGATG
66 AAAACAATAAAAGAAAGAAATAGATAAGAGAAAGAAAGGATG
*
26302507 GCATAACAAATTTAAGTCATAATCATTAAAGTGAAAACCAACAAACAAGTTGCAACCATGATTAA
1 GCATAACAAATTTAAGTCATAATCATTAAAGTGAAAACCAACAAACAACTTGCAACCATGATTAA
* *
26302572 AAAACAATAGAAGAAAGTAATAGATAAGAGAAAGAAAGGATG
66 AAAACAATAAAAGAAAGAAATAGATAAGAGAAAGAAAGGATG
26302614 TTAGCCGAAT
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
107 104 1.00
ACGTcount: A:0.55, C:0.12, G:0.15, T:0.18
Consensus pattern (107 bp):
GCATAACAAATTTAAGTCATAATCATTAAAGTGAAAACCAACAAACAACTTGCAACCATGATTAA
AAAACAATAAAAGAAAGAAATAGATAAGAGAAAGAAAGGATG
Found at i:26318411 original size:21 final size:21
Alignment explanation
Indices: 26318382--26318435 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 21
26318372 AAAATATAAA
26318382 AAAATAAATATAAAAAATTCAG
1 AAAA-AAATATAAAAAATTCAG
* *
26318404 AAAAAAATAT--ATAATTTAG
1 AAAAAAATATAAAAAATTCAG
*
26318423 AAAAACATATAAA
1 AAAAAAATATAAA
26318436 TTATAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 16 0.59
21 7 0.26
22 4 0.15
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (21 bp):
AAAAAAATATAAAAAATTCAG
Found at i:26318432 original size:17 final size:17
Alignment explanation
Indices: 26318396--26318444 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
26318386 TAAATATAAA
*
26318396 AAATTCAGAAAAAAATAT
1 AAATT-AGAAAAACATAT
26318414 ATAATTTAGAAAAACATAT
1 A-AA-TTAGAAAAACATAT
*
26318433 AAATTATAAAAA
1 AAATTAGAAAAA
26318445 ATTAAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 8 0.30
18 3 0.11
19 14 0.52
20 2 0.07
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (17 bp):
AAATTAGAAAAACATAT
Found at i:26318452 original size:8 final size:8
Alignment explanation
Indices: 26318441--26318483 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
26318431 ATAAATTATA
26318441 AAAAATT-
1 AAAAATTG
26318448 AAAAATTG
1 AAAAATTG
26318456 AAAAATTG
1 AAAAATTG
26318464 AAAAATATG
1 AAAAAT-TG
*
26318473 -ATAATTG
1 AAAAATTG
26318480 AAAA
1 AAAA
26318484 GAAATTAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
7 9 0.29
8 20 0.65
9 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (8 bp):
AAAAATTG
Found at i:26319709 original size:6 final size:6
Alignment explanation
Indices: 26319698--26319722 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26319688 GAATTTTTTA
26319698 TATATT TATATT TATATT TATATT T
1 TATATT TATATT TATATT TATATT T
26319723 TTAAATGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATATT
Found at i:26319733 original size:20 final size:20
Alignment explanation
Indices: 26319694--26319734 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26319684 TTATGAATTT
* *
26319694 TTTATATATTTATATTTATA
1 TTTATATATTTAAATGTATA
*
26319714 TTTATATTTTTAAATGTATA
1 TTTATATATTTAAATGTATA
26319734 T
1 T
26319735 ATACATTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTATATATTTAAATGTATA
Found at i:26321929 original size:21 final size:24
Alignment explanation
Indices: 26321904--26321953 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 24
26321894 ATTTTTGAAG
26321904 GTTATAATT-TTGTA-TCTTA-AA
1 GTTATAATTATTGTATTCTTAGAA
*
26321925 TTTAT-ATTATTGTATTCTTAGAA
1 GTTATAATTATTGTATTCTTAGAA
26321948 GTTATA
1 GTTATA
26321954 TTAGACCTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
20 3 0.13
21 9 0.39
22 5 0.22
23 6 0.26
ACGTcount: A:0.32, C:0.04, G:0.10, T:0.54
Consensus pattern (24 bp):
GTTATAATTATTGTATTCTTAGAA
Found at i:26321954 original size:23 final size:21
Alignment explanation
Indices: 26321904--26321956 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 21
26321894 ATTTTTGAAG
26321904 GTTATAATT-TTGTATCTTAAA
1 GTTAT-ATTATTGTATCTTAAA
*
26321925 TTTATATTATTGTATTCTTAGAA
1 GTTATATTATTGTA-TCTTA-AA
26321948 GTTATATTA
1 GTTATATTA
26321957 GACCTGTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 3 0.11
21 9 0.33
22 5 0.19
23 10 0.37
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.55
Consensus pattern (21 bp):
GTTATATTATTGTATCTTAAA
Found at i:26337941 original size:6 final size:6
Alignment explanation
Indices: 26337918--26337992 Score: 57
Period size: 6 Copynumber: 12.5 Consensus size: 6
26337908 GTTTGAATAG
* * *
26337918 ATTTAA ATTT-A TTGTTAA ATTTAA ATTTTTAA ATTTAA ATTT-G CTTTAA
1 ATTTAA ATTTAA AT-TTAA ATTTAA A--TTTAA ATTTAA ATTTAA ATTTAA
* *
26337967 ATTTAA ATTT-A ATTAAA ATTAAA ATT
1 ATTTAA ATTTAA ATTTAA ATTTAA ATT
26337993 AATATTAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
5 9 0.16
6 39 0.70
7 2 0.04
8 6 0.11
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (6 bp):
ATTTAA
Found at i:26337985 original size:17 final size:17
Alignment explanation
Indices: 26337918--26338002 Score: 68
Period size: 17 Copynumber: 5.1 Consensus size: 17
26337908 GTTTGAATAG
* *
26337918 ATTTAAATTTATTGTTAA
1 ATTTAAATTTAAT-TAAA
26337936 ATTTAAATTT--TT-AA
1 ATTTAAATTTAATTAAA
** *
26337950 ATTTAAATTTGCTTTAA
1 ATTTAAATTTAATTAAA
26337967 ATTTAAATTTAATTAAA
1 ATTTAAATTTAATTAAA
* *
26337984 ATTAAAATTAATATTAAA
1 ATTTAAATTTA-ATTAAA
26338002 A
1 A
26338003 ACCCAAATAG
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
14 12 0.21
15 1 0.02
16 3 0.05
17 25 0.43
18 17 0.29
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (17 bp):
ATTTAAATTTAATTAAA
Found at i:26338671 original size:18 final size:18
Alignment explanation
Indices: 26338648--26338691 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
26338638 AATGTTTTGA
26338648 TAATAATAA-CAAACGTTT
1 TAATAATAATC-AACGTTT
*
26338666 TAATAATAATCAATGTTT
1 TAATAATAATCAACGTTT
26338684 TAATAATA
1 TAATAATA
26338692 GTATTAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.39
Consensus pattern (18 bp):
TAATAATAATCAACGTTT
Found at i:26338690 original size:21 final size:20
Alignment explanation
Indices: 26338638--26338691 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 20
26338628 AAGCAACATT
26338638 AATGTTTTGATAATAATAACA
1 AATGTTTT-ATAATAATAACA
*
26338659 AACG-TTT-TAATAATAATC-
1 AATGTTTTATAATAATAA-CA
26338677 AATGTTTTAATAATA
1 AATGTTTT-ATAATA
26338692 GTATTAAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
18 12 0.44
19 4 0.15
20 3 0.11
21 8 0.30
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (20 bp):
AATGTTTTATAATAATAACA
Found at i:26339887 original size:29 final size:29
Alignment explanation
Indices: 26339831--26340116 Score: 209
Period size: 30 Copynumber: 9.8 Consensus size: 29
26339821 CTTAAACTGA
** * *
26339831 CCAAAAATTGTATTTTGACCCCCGAAACTC
1 CCAAAAATTACATTTTTACCCCC-AAACTT
26339861 CCAAAAATTACATTTTTACCCCCAAACTT
1 CCAAAAATTACATTTTTACCCCCAAACTT
* * *
26339890 TCAAAAATTACATTTTTA-CCCTAAAATT
1 CCAAAAATTACATTTTTACCCCCAAACTT
* * * * * *
26339918 CTAAAAATTTCATTATTGATCTCAAAACTT
1 CCAAAAATTACATT-TTTACCCCCAAACTT
* * *
26339948 TCAAAAATTACATTTCTACCCCCGAACTT
1 CCAAAAATTACATTTTTACCCCCAAACTT
* * *
26339977 CCAAAAATTTA-ACTTTTAACCTCGAAACTT
1 CCAAAAA-TTACA-TTTTTACCCCCAAACTT
* * **
26340007 CCAAAAATTCCATTTTGACCCAAAAACTT
1 CCAAAAATTACATTTTTACCCCCAAACTT
* **
26340036 CC-AAAATTACATTTTTATCCCTGAACTT
1 CCAAAAATTACATTTTTACCCCCAAACTT
* ** * *
26340064 CTAAAAATCCCATTTTTGATCCCGAAACTT
1 CCAAAAATTACATTTTT-ACCCCCAAACTT
* *
26340094 GCAAAAATTACAATTTTACCCCC
1 CCAAAAATTACATTTTTACCCCC
26340117 GGATGTCCAA
Statistics
Matches: 197, Mismatches: 52, Indels: 15
0.75 0.20 0.06
Matches are distributed among these distances:
28 40 0.20
29 74 0.38
30 83 0.42
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (29 bp):
CCAAAAATTACATTTTTACCCCCAAACTT
Found at i:26339982 original size:87 final size:86
Alignment explanation
Indices: 26339862--26340102 Score: 238
Period size: 87 Copynumber: 2.8 Consensus size: 86
26339852 CCGAAACTCC
* * * *
26339862 CAAAAATTACATTTTTACCCCCAAACTTTCAAAAATTACATTTTTACC-CTAAAATTCTAAAAAT
1 CAAAAATTACATTTTTACCCCCGAACTTCCAAAAATTACATTTTTACCTCGAAAATTCCAAAAAT
* *
26339926 TTCATTATTGATCTC-AAAACTTT
66 TCCATT-TTGA-CCCAAAAAC-TT
* * *
26339949 CAAAAATTACATTTCTACCCCCGAACTTCCAAAAATTTA-ACTTTTAACCTCGAAACTTCCAAAA
1 CAAAAATTACATTTTTACCCCCGAACTTCCAAAAA-TTACA-TTTTTACCTCGAAAATTCCAAAA
26340013 ATTCCATTTTGACCCAAAAACTT
64 ATTCCATTTTGACCCAAAAACTT
* * * * ** * *
26340036 CCAAAATTACATTTTTATCCCTGAACTTCTAAAAATCCCATTTTTGATCC-CGAAACTTGCAAAA
1 CAAAAATTACATTTTTACCCCCGAACTTCCAAAAATTACATTTTT-A-CCTCGAAAATTCCAAAA
26340100 ATT
64 ATT
26340103 ACAATTTTAC
Statistics
Matches: 129, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
86 5 0.04
87 85 0.66
88 21 0.16
89 18 0.14
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.34
Consensus pattern (86 bp):
CAAAAATTACATTTTTACCCCCGAACTTCCAAAAATTACATTTTTACCTCGAAAATTCCAAAAAT
TCCATTTTGACCCAAAAACTT
Found at i:26340035 original size:59 final size:58
Alignment explanation
Indices: 26339831--26340041 Score: 169
Period size: 59 Copynumber: 3.6 Consensus size: 58
26339821 CTTAAACTGA
** * * * * *
26339831 CCAAAAATTGTATTTTGACCCCCGAAACTCCCAAAAA-TTACATTTTTACCCCCAAACTT
1 CCAAAAATTACATTTTGA-CCCCAAAACTTCCAAAAATTTAC-TTTTAACCTCAAAACTT
* * * * * *
26339890 TCAAAAATTACATTTTTACCCTAAAA-TTCTAAAAATTT-CATTATTGATCTCAAAACTT
1 CCAAAAATTACATTTTGACCCCAAAACTTCCAAAAATTTAC-TT-TTAACCTCAAAACTT
* ** *
26339948 TCAAAAATTACATTTCT-ACCCCCGAACTTCCAAAAATTTAACTTTTAACCTCGAAACTT
1 CCAAAAATTACATTT-TGACCCCAAAACTTCCAAAAATTT-ACTTTTAACCTCAAAACTT
* *
26340007 CCAAAAATTCCATTTTGACCCAAAAACTTCCAAAA
1 CCAAAAATTACATTTTGACCCCAAAACTTCCAAAA
26340042 TTACATTTTT
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
57 11 0.09
58 41 0.34
59 66 0.55
60 2 0.02
61 1 0.01
ACGTcount: A:0.39, C:0.26, G:0.03, T:0.32
Consensus pattern (58 bp):
CCAAAAATTACATTTTGACCCCAAAACTTCCAAAAATTTACTTTTAACCTCAAAACTT
Found at i:26340129 original size:146 final size:146
Alignment explanation
Indices: 26339853--26340117 Score: 372
Period size: 146 Copynumber: 1.8 Consensus size: 146
26339843 TTTTGACCCC
* **
26339853 CGAAACTCCCAAAAATTACATTTTTACCCCCAAACTTTCAAAAATTACATTTTTACCCTAAAATT
1 CGAAACTCCCAAAAATTACATTTTGACCCAAAAACTTTCAAAAATTACATTTTTACCCTAAAATT
** * *
26339918 CTAAAAATTTCATTATTGATCTCAAAACTTTCAAAAATTACATTTCTACCCCCGAACTTCCAAAA
66 CTAAAAATCCCATTATTGATCCCAAAACTTGCAAAAATTACATTTCTACCCCCGAACTTCCAAAA
26339983 ATTTAACTTTTAACCT
131 ATTTAACTTTTAACCT
* * * * *
26339999 CGAAACTTCCAAAAATTCCATTTTGACCCAAAAAC-TTCCAAAATTACATTTTTATCCCTGAACT
1 CGAAACTCCCAAAAATTACATTTTGACCCAAAAACTTTCAAAAATTACATTTTTA-CCCTAAAAT
* *
26340063 TCTAAAAATCCCATTTTTGATCCCGAAACTTGCAAAAATTACAATTT-TACCCCCG
65 TCTAAAAATCCCATTATTGATCCCAAAACTTGCAAAAATTAC-ATTTCTACCCCCG
26340118 GATGTCCAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
145 18 0.17
146 81 0.79
147 4 0.04
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.33
Consensus pattern (146 bp):
CGAAACTCCCAAAAATTACATTTTGACCCAAAAACTTTCAAAAATTACATTTTTACCCTAAAATT
CTAAAAATCCCATTATTGATCCCAAAACTTGCAAAAATTACATTTCTACCCCCGAACTTCCAAAA
ATTTAACTTTTAACCT
Found at i:26346099 original size:21 final size:21
Alignment explanation
Indices: 26346073--26346136 Score: 87
Period size: 21 Copynumber: 3.0 Consensus size: 21
26346063 TTCTAAATAA
*
26346073 GACTAAGTCCT-AGGTGGATTT
1 GACTAAGTCCTAAGG-AGATTT
26346094 GACTAAGTCCTAAGGAGATTT
1 GACTAAGTCCTAAGGAGATTT
26346115 GACTAAGTCC-AAGAGAGATTT
1 GACTAAGTCCTAAG-GAGATTT
26346136 G
1 G
26346137 TTGGCTTGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
20 3 0.08
21 34 0.85
22 3 0.08
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (21 bp):
GACTAAGTCCTAAGGAGATTT
Found at i:26351208 original size:30 final size:30
Alignment explanation
Indices: 26351163--26351777 Score: 427
Period size: 30 Copynumber: 20.8 Consensus size: 30
26351153 TTTCAGAGAA
*
26351163 TTTA-GGGTTAAAATGTGATTTTGGAAAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
* * * *
26351192 TTTAGGTGTAAAAATGTGATTTT-AAAAAGG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAA-G
* * * *
26351222 TTT-GGGGTCAAAATCTGATTTTGGGAAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
* * *
26351251 TTTA-AGGTTAAAATGTGATTTTGG-GAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
* * *
26351279 TTTGGGGGTTAAATTGTAATTTTGGAAATG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
*
26351309 TTTGGGGGTTAAAATGTAATTTTGGATAAA-
1 TTTAGGGGTTAAAATGTAATTTTGGA-AAAG
* * *
26351339 TTT-GGTGTGAAAATGTGATTTTGGAAAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
* * ** *
26351368 CTT-GAGGGTCAAAATACAATTTTGGAGAAG
1 TTTAG-GGGTTAAAATGTAATTTTGGAAAAG
** *
26351398 TTT-GGGGATTAAAATACAATTTT-TAAGAAG
1 TTTAGGGG-TTAAAATGTAATTTTGGAA-AAG
* * *
26351428 TTTAGGGGTCAAAATGTAATTTTAGAGAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
*
26351458 TTTAGGGGTTAAAATGTGATTTTGGAAAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
* ** *
26351488 CTT-GAGGGTTAAAATAAAATTTTGGAGAAG
1 TTTAG-GGGTTAAAATGTAATTTTGGAAAAG
* * ** *
26351518 TTT-GGGGATCAAATACAATTTT-TAAGAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAA-AAG
*
26351547 TTTAGGGGTTAAAATGTAATTTTGGAGAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
**
26351577 TTTAGGGGTTAAAATGTAGGTTTGGAAAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
* * *
26351607 TTTAGGGATGAAAATGTGATTTTGGAAAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
* * * * *
26351637 CTT-GGGGTCAAAATGAAATTTTAGAGAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
* * * *
26351666 TTTAGAGGTCAAAAT-TCAATTTTAGAGAAG
1 TTTAGGGGTTAAAATGT-AATTTTGGAAAAG
** *
26351696 TTTA-ATGTCAAAATGTAATTTTGGAAAAG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
* * * * * *
26351725 CTTAGGGGTGAGAATATGA-TTTGGAAAGG
1 TTTAGGGGTTAAAATGTAATTTTGGAAAAG
* * *
26351754 TTTGGAGGGTCAAAATGTGATTTT
1 TTTAG-GGGTTAAAATGTAATTTT
26351778 TGGGTAAAAC
Statistics
Matches: 469, Mismatches: 94, Indels: 44
0.77 0.15 0.07
Matches are distributed among these distances:
28 10 0.02
29 167 0.36
30 281 0.60
31 11 0.02
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (30 bp):
TTTAGGGGTTAAAATGTAATTTTGGAAAAG
Found at i:26351271 original size:88 final size:88
Alignment explanation
Indices: 26351161--26351769 Score: 258
Period size: 89 Copynumber: 6.9 Consensus size: 88
26351151 AGTTTCAGAG
* *
26351161 AATTTAGGGTTAAAATGTGATTTTGGAAAAGTTTAGGTGTAAAAATGTGATTTTAAAAAGGTTT-
1 AATTTA-GGTTAAAATGTGATTTTGGAAAAGTTTAGGGGTAAAAATGTAATTTTAAAAAGGTTTG
*
26351225 GGGGTCAAAATCTGATTTTGGGA-A
65 GGGGTCAAAATCTAATTTT-GGATA
* * * * * ** *
26351249 AGTTTAAGGTTAAAATGTGATTTTGG-GAAGTTTGGGGGTTAAATTGTAATTTTGGAAATGTTTG
1 AATTT-AGGTTAAAATGTGATTTTGGAAAAGTTTAGGGGTAAAAATGTAATTTTAAAAAGGTTTG
* *
26351313 GGGGTTAAAATGTAATTTTGGATA
65 GGGGTCAAAATCTAATTTTGGATA
* * ** * *
26351337 AATTT-GGTGTGAAAATGTGATTTTGGAAAAGCTT-GAGGGTCAAAATACAATTTTGGAGAA-GT
1 AATTTAGGT-T-AAAATGTGATTTTGGAAAAGTTTAG-GGGTAAAAATGTAATTTT-AAAAAGGT
* * ** *
26351399 TTGGGGATTAAAATAC-AATTTTTAAGA
62 TTGGGGGTCAAAAT-CTAATTTTGGATA
* * * * * * * * *
26351426 AGTTTAGGGGTCAAAATGTAATTTTAGAGAAGTTTAGGGGTTAAAATGTGATTTTGGAAAA-GCT
1 AATTTA--GGTTAAAATGTGATTTTGGAAAAGTTTAGGGGTAAAAATGTAATTTT-AAAAAGGTT
* * ** *
26351490 TGAGGGTTAAAATAAAATTTTGGAGA
63 TGGGGGTCAAAATCTAATTTTGGATA
* * * * *** * * * *
26351516 AGTTTGGGGATCAAATACAATTTT-TAAGAAGTTTAGGGGTTAAAATGTAATTTTGGAGAA-GTT
1 AATTT-AGGTTAAAATGTGATTTTGGAA-AAGTTTAGGGGTAAAAATGTAATTTT-AAAAAGGTT
* * * **
26351579 TAGGGGTTAAAATGTAGGTTTGGA-A
63 TGGGGGTCAAAATCTAATTTTGGATA
* * * * *
26351604 AAGTTTAGGGATGAAAATGTGATTTTGGAAAAGCTT-GGGGTCAAAATGAAATTTTAGAGAA-GT
1 AA-TTTA-GG-TTAAAATGTGATTTTGGAAAAGTTTAGGGGTAAAAATGTAATTTTA-AAAAGGT
* * * *
26351667 TTAGAGGTCAAAAT-TCAATTTTAGAGA
62 TTGGGGGTCAAAATCT-AATTTTGGATA
* * * * * * * * * **
26351694 AGTTTAATGTCAAAATGTAATTTTGGAAAAGCTTAGGGGTGAGAATATGA-TTTGGAAAGGTTTG
1 AATTT-AGGTTAAAATGTGATTTTGGAAAAGTTTAGGGGTAAAAATGTAATTTTAAAAAGGTTTG
26351758 GAGGGTCAAAAT
65 G-GGGTCAAAAT
26351770 GTGATTTTTG
Statistics
Matches: 401, Mismatches: 93, Indels: 53
0.73 0.17 0.10
Matches are distributed among these distances:
86 3 0.01
87 34 0.08
88 95 0.24
89 178 0.44
90 85 0.21
91 3 0.01
92 3 0.01
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (88 bp):
AATTTAGGTTAAAATGTGATTTTGGAAAAGTTTAGGGGTAAAAATGTAATTTTAAAAAGGTTTGG
GGGTCAAAATCTAATTTTGGATA
Found at i:26351733 original size:89 final size:89
Alignment explanation
Indices: 26351348--26351733 Score: 345
Period size: 89 Copynumber: 4.3 Consensus size: 89
26351338 ATTTGGTGTG
* *
26351348 AAAATGTGATTTTGGAAAAGCTT-GAGGGTCAAAAT-ACAATTTTGGAGAAGTTTGGGGATTAAA
1 AAAATGTAATTTTGGAAAAGCTTAG-GGGTCAAAATGA-AATTTTGGAGAAGTTTGAGG-TTAAA
*
26351411 ATACAATTTTTA-AGAAGTTTAGGGGTC
63 ATACAA-TTTTAGAGAAGTTTAGGGATC
* * * * ** * *
26351438 AAAATGTAATTTTAGAGAAGTTTAGGGGTTAAAATGTGATTTTGGAAAAGCTTGAGGGTTAAAAT
1 AAAATGTAATTTTGGAAAAGCTTAGGGGTCAAAATGAAATTTTGGAGAAGTTTGA-GGTTAAAAT
* * *
26351503 AAAATTTTGGAGAAGTTTGGGGATC
65 ACAATTTTAGAGAAGTTTAGGGATC
** * * * * *
26351528 -AAATACAATTTT-TAAGAAGTTTAGGGGTTAAAATGTAATTTTGGAGAAGTTTAGGGGTTAAAA
1 AAAATGTAATTTTGGAA-AAGCTTAGGGGTCAAAATGAAATTTTGGAGAAGTTT-GAGGTTAAAA
** ** * * *
26351591 TGTAGGTTTGGAAAAGTTTAGGGATG
64 TACAATTTTAGAGAAGTTTAGGGATC
* * *
26351617 AAAATGTGATTTTGGAAAAGCTT-GGGGTCAAAATGAAATTTTAGAGAAGTTTAGAGGTCAAAAT
1 AAAATGTAATTTTGGAAAAGCTTAGGGGTCAAAATGAAATTTTGGAGAAGTTT-GAGGTTAAAAT
* **
26351681 TCAATTTTAGAGAAGTTTAATG-TC
65 ACAATTTTAGAGAAGTTTAGGGATC
26351705 AAAATGTAATTTTGGAAAAGCTTAGGGGT
1 AAAATGTAATTTTGGAAAAGCTTAGGGGT
26351734 GAGAATATGA
Statistics
Matches: 238, Mismatches: 49, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
88 24 0.10
89 129 0.54
90 80 0.34
91 5 0.02
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.33
Consensus pattern (89 bp):
AAAATGTAATTTTGGAAAAGCTTAGGGGTCAAAATGAAATTTTGGAGAAGTTTGAGGTTAAAATA
CAATTTTAGAGAAGTTTAGGGATC
Found at i:26351770 original size:119 final size:120
Alignment explanation
Indices: 26351189--26351769 Score: 519
Period size: 119 Copynumber: 4.9 Consensus size: 120
26351179 GATTTTGGAA
* * * * * * * *
26351189 AAGTTTAGGTGTAAAAATGTGATTTTA-AAAAGGTTT-GGGGTCAAAATCTGATTTTGGGAAAG-
1 AAGTTTAGGGGTCAAAATGTAATTTTAGAGAA-GTTTAGGGGTTAAAATGTAATTTTGGAAAAGC
* * * * * * * * ** *
26351251 TTTAAGGTTAAAATGTGATTTTGG-GAAGTTTGGGGGTTAAATTGTAATTTTGGAA-
65 TTGAGGGTGAAAATATAATTTTGGAGAAGTTTGGGGATCAAAATACAATTTT-TAAG
* * * * * * * * *
26351306 ATGTTTGGGGGTTAAAATGTAATTTTGGATAAATTT-GGTGTGAAAATGTGATTTTGGAAAAGCT
1 AAGTTTAGGGGTCAAAATGTAATTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTGGAAAAGCT
* * *
26351370 TGAGGGTCAAAATACAATTTTGGAGAAGTTTGGGGATTAAAATACAATTTTTAAG
66 TGAGGGTGAAAATATAATTTTGGAGAAGTTTGGGGATCAAAATACAATTTTTAAG
*
26351425 AAGTTTAGGGGTCAAAATGTAATTTTAGAGAAGTTTAGGGGTTAAAATGTGATTTTGGAAAAGCT
1 AAGTTTAGGGGTCAAAATGTAATTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTGGAAAAGCT
* *
26351490 TGAGGGTTAAAATAAAATTTTGGAGAAGTTTGGGGATC-AAATACAATTTTTAAG
66 TGAGGGTGAAAATATAATTTTGGAGAAGTTTGGGGATCAAAATACAATTTTTAAG
* * **
26351544 AAGTTTAGGGGTTAAAATGTAATTTTGGAGAAGTTTAGGGGTTAAAATGTAGGTTTGGAAAAG-T
1 AAGTTTAGGGGTCAAAATGTAATTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTGGAAAAGCT
* * * * *
26351608 TTAGGGATGAAAATGTGATTTTGGAAAAGCTTGGGG-TCAAAATGA-AA-TTTTAGAG
66 TGAGGG-TGAAAATATAATTTTGGAGAAGTTTGGGGATCAAAAT-ACAATTTTTA-AG
* ** *
26351663 AAGTTTAGAGGTCAAAAT-TCAATTTTAGAGAAGTTTA-ATGTCAAAATGTAATTTTGGAAAAGC
1 AAGTTTAGGGGTCAAAATGT-AATTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTGGAAAAGC
* * *
26351726 TT-AGGGGTGAGAATATGA-TTTGGA-AAGGTTTGGAGGGTCAAAAT
65 TTGA-GGGTGAAAATATAATTTTGGAGAA-GTTTGG-GGATCAAAAT
26351770 GTGATTTTTG
Statistics
Matches: 392, Mismatches: 57, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
116 2 0.01
117 57 0.15
118 69 0.18
119 202 0.52
120 62 0.16
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.34
Consensus pattern (120 bp):
AAGTTTAGGGGTCAAAATGTAATTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTGGAAAAGCT
TGAGGGTGAAAATATAATTTTGGAGAAGTTTGGGGATCAAAATACAATTTTTAAG
Found at i:26353628 original size:37 final size:37
Alignment explanation
Indices: 26353574--26353675 Score: 141
Period size: 37 Copynumber: 2.8 Consensus size: 37
26353564 CATTGATTCA
*
26353574 ATCTACTTCTCTGTATCTCATTAGGAAGGCGGATTTG
1 ATCTACTTCTCTGTATCTCATCAGGAAGGCGGATTTG
* * * * *
26353611 GTCTACTTCTCTATATCTCATCAAGAAAGTGGATTTG
1 ATCTACTTCTCTGTATCTCATCAGGAAGGCGGATTTG
*
26353648 ATCCACTTCTCTGTATCTCATCAGGAAG
1 ATCTACTTCTCTGTATCTCATCAGGAAG
26353676 ATGACCACTT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (37 bp):
ATCTACTTCTCTGTATCTCATCAGGAAGGCGGATTTG
Found at i:26353847 original size:245 final size:242
Alignment explanation
Indices: 26353414--26353882 Score: 722
Period size: 245 Copynumber: 1.9 Consensus size: 242
26353404 TGGTCTACTG
* ** *
26353414 CTCTGTATCTCATCAGGAAGATGATCGTTTTATTACTTCGACCCACTTCTCTGTATCTCATCAGG
1 CTCTGTATCTCATCAGGAAGATGACCACTTTATTACTTCGACCCACTTCTCTGTATCTCATCAAG
* *
26353479 AAGATGGGGTTTGAAGTCTTAGTATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTATATCT
66 AAGATGGAGTTTGAAGTCTTAGAATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTATATCT
* * * *
26353544 CATCAGGAAGATGACCACTTCATTGATTCAATCTACTTCTCTGTATCTCATTAGGAAGGCGGATT
131 CATCAGGAAGATGACCACTTCATTGATTCAATCCACTTCTCTGTATCGCATCAGGAAGGCAGATT
*
26353609 TGGTCTACTTCTCTATATCTCATCAAGAAAGTGGATTTGATCCACTT
196 TGGTCCACTTCTCTATATCTCATCAAGAAAGTGGATTTGATCCACTT
*
26353656 CTCTGTATCTCATCAGGAAGATGACCACTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAG
1 CTCTGTATCTCATCAGGAAGATGACCACTTTATTACTTCGACCCACTTCTCTGTATCTCATCAAG
* * * *
26353721 AAGATGGAGTTTGAAGTCTCATTCGAATTGAGCTTCGTTTCATTGATTTGGTCTACTTCTTTGTA
66 AAGATGGAGTTTGAAG--TC-TTAGAATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTATA
* **
26353786 TCTCATTAGGAAGATGACTGCTTCATTGATTCAATCCACTTCTCTGTATCGCATCAGGAAGGCAG
128 TCTCATCAGGAAGATGACCACTTCATTGATTCAATCCACTTCTCTGTATCGCATCAGGAAGGCAG
* *
26353851 ATTTGGTCCGCTTCTCTGTATCTCATCAAGAA
193 ATTTGGTCCACTTCTCTATATCTCATCAAGAA
26353883 GATGACCACT
Statistics
Matches: 203, Mismatches: 21, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
242 75 0.37
244 2 0.01
245 126 0.62
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (242 bp):
CTCTGTATCTCATCAGGAAGATGACCACTTTATTACTTCGACCCACTTCTCTGTATCTCATCAAG
AAGATGGAGTTTGAAGTCTTAGAATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTATATCT
CATCAGGAAGATGACCACTTCATTGATTCAATCCACTTCTCTGTATCGCATCAGGAAGGCAGATT
TGGTCCACTTCTCTATATCTCATCAAGAAAGTGGATTTGATCCACTT
Found at i:26353973 original size:208 final size:209
Alignment explanation
Indices: 26353615--26354055 Score: 715
Period size: 208 Copynumber: 2.1 Consensus size: 209
26353605 GATTTGGTCT
* * ** *
26353615 ACTTCTCTATATCTCATCAAGAAAGTGGATTTGATCCACTTCTCTGTATCTCATCAGGAAGATGA
1 ACTTCTCTGTATCTCATCAAGAAGGCAGATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGA
26353680 CCACTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGAGTTTGAAGTCTCATTC
66 CCACTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGAGTTTGAAGTCTCATTC
* * *
26353745 GAATTGAGCTTCGTTTCATTGATTTGGTCTACTTC-TTTGTATCTCATTAGGAAGATGACTGCTT
131 GAATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTTTTGTATCTCATCAGGAAGATGACTGCCT
26353809 CATTGATTCAATCC
196 CATTGATTCAATCC
* * * *
26353823 ACTTCTCTGTATCGCATCAGGAAGGCAGATTTGGTCCGCTTCTCTGTATCTCATCAAGAAGATGA
1 ACTTCTCTGTATCTCATCAAGAAGGCAGATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGA
*
26353888 CCACTTTATTACTTTGACCCACTTCTCTGTATCTCATC-AGAAAGATGGGGTTTGAAGTCTCATT
66 CCACTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAG-AAGATGGAGTTTGAAGTCTCATT
* *
26353952 CGTATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTTTTGTATCTCATCAGGAAGATGATTGCC
130 CGAATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTTTTGTATCTCATCAGGAAGATGACTGCC
*
26354017 TCATTGTTTCAATCC
195 TCATTGATTCAATCC
26354032 ACTTCTCTGTATCTCATCAAGAAG
1 ACTTCTCTGTATCTCATCAAGAAG
26354056 ATGACCGCTT
Statistics
Matches: 213, Mismatches: 18, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
207 2 0.01
208 150 0.70
209 61 0.29
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (209 bp):
ACTTCTCTGTATCTCATCAAGAAGGCAGATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGA
CCACTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGAGTTTGAAGTCTCATTC
GAATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTTTTGTATCTCATCAGGAAGATGACTGCCT
CATTGATTCAATCC
Found at i:26354144 original size:39 final size:39
Alignment explanation
Indices: 26354085--26354209 Score: 171
Period size: 39 Copynumber: 3.2 Consensus size: 39
26354075 GGATGACTGT
26354085 AATCTGCCTCATGATCGGGGTAAGAGATTGAATGGCTGC
1 AATCTGCCTCATGATCGGGGTAAGAGATTGAATGGCTGC
* * * *
26354124 AATTTGCCTCAAGATTGGGGTAAGAGATT-AGATGGCTAC
1 AATCTGCCTCATGATCGGGGTAAGAGATTGA-ATGGCTGC
* * *
26354163 AATCTGCCTTATGATCGGGGTAAGAGATTGGATGGTTGC
1 AATCTGCCTCATGATCGGGGTAAGAGATTGAATGGCTGC
26354202 AATCTGCC
1 AATCTGCC
26354210 CCTCTTGACT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 72 0.99
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (39 bp):
AATCTGCCTCATGATCGGGGTAAGAGATTGAATGGCTGC
Found at i:26354530 original size:49 final size:49
Alignment explanation
Indices: 26354473--26355098 Score: 432
Period size: 50 Copynumber: 12.7 Consensus size: 49
26354463 TCATGTTTCT
* ** * * * *
26354473 ATGGTACTGGGTTTGCCATTGCGGCCTCAACCTTTCCCTTCATATATTC
1 ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * * *
26354522 ATGGTACTGGATTCACCGTTGTGGCCTCAACCCTTCCCATCACATCTTTT
1 ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC-TTC
* ** * *
26354572 AAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCTTTCAAATCTTT
1 ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* *
26354621 ATGGTACCGGGTTCACTGTTGTGGCCTCAACCTTTCCCATCACAT-TTC
1 ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* ** * * * *
26354669 ATGGTACCGGATTCGTCGTTGTGGCCTCAATCC-TTCTCATAACGTCTTC
1 ATGGTACCGGGTTCACCGTTGCGGCCTCAA-CCTTTCCCATCACATCTTC
* * *** * * * *
26354718 TAAGGTACCGAGTTTGTCGTTGCGGTCTTAACCCTTCCCATCACATCTTTT
1 -ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC-TTC
* * * **
26354769 AAGGTATCGGGTTCACCGTTGCGGCCTCAACCTTTCCTATCATGT-TTC
1 ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
** * * * *
26354817 ATGGTACTAGATTCACCGTTGCAGCCTCAATCTTTCCCATCACATCTTTT
1 ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATC-TTC
* ** * * ** * * * *
26354867 AAGGTATTGGGTTCGCCATTGTAGCCTCAACATTTCCCTTCAAATCTTT
1 ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
** * * * * *
26354916 ATGGTACCGATTTTACCGTTACGGCCTTAACCTTTCCCTTCAAATCTTC
1 ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * * *
26354965 ATGATACCGGGTTCGCCGTTACGGCCTTAACCTTTCCCATCATAT-TTC
1 ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * * * * * *
26355013 ATGGTACTGGGTTCGCCGTTGTGGCATCTATCTTTCCCATCTCGTCTTC
1 ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * * *
26355062 TAAGGTTCCGGGTTCATCGTTGTGGCCTCAATCTTTC
1 -ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTC
26355099 TTTTCAAATC
Statistics
Matches: 451, Mismatches: 116, Indels: 19
0.77 0.20 0.03
Matches are distributed among these distances:
48 111 0.25
49 165 0.37
50 173 0.38
51 2 0.00
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35
Consensus pattern (49 bp):
ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
Found at i:26354966 original size:148 final size:147
Alignment explanation
Indices: 26354472--26355098 Score: 551
Period size: 148 Copynumber: 4.3 Consensus size: 147
26354462 GTCATGTTTC
* ** *
26354472 TATGGTACTGGGTTTGCCATTGCGGCCTCAACCTTTCCCTTCATATATTCATGGTACTGGATTCA
1 TATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATAT-TTCATGGTACTGGATTCA
* *
26354537 CCGTTGTGGCCTCAACCCTTCCCATCACATCTTTTAAGGTACCGGGTTCACCGTTGCGGCCTCAA
65 CCGTTGTGGCCTCAATCCTTCCCATCACATCTTTTAAGGTACCGGGTTCGCCGTTGCGGCCTCAA
*
26354602 CCTTTCCTTTCAAATCTT
130 CCTTTCCCTTCAAATCTT
* * * * * **
26354620 TATGGTACCGGGTTCACTGTTGTGGCCTCAACCTTTCCCATCACATTTCATGGTACCGGATTCGT
1 TATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATTTCATGGTACTGGATTCAC
* * * * * * * * *
26354685 CGTTGTGGCCTCAATCCTTCTCATAACGTCTTCTAAGGTACCGAGTTTGTCGTTGCGGTCTTAAC
66 CGTTGTGGCCTCAATCCTTCCCATCACATCTTTTAAGGTACCGGGTTCGCCGTTGCGGCCTCAAC
* * *
26354750 CCTTCCCATCACATCTTT
131 CTTTCCCTTCAAATC-TT
* * * *
26354768 TAAGGTATCGGGTTCACCGTTGCGGCCTCAACCTTT-CCTATCATGTTTCATGGTACTAGATTCA
1 TATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCT-TCATATTTCATGGTACTGGATTCA
** * ** * **
26354832 CCGTTGCAGCCTCAATCTTTCCCATCACATCTTTTAAGGTATTGGGTTCGCCATTGTAGCCTCAA
65 CCGTTGTGGCCTCAATCCTTCCCATCACATCTTTTAAGGTACCGGGTTCGCCGTTGCGGCCTCAA
*
26354897 CATTTCCCTTCAAATCTT
130 CCTTTCCCTTCAAATCTT
** * * * * * * * *
26354915 TATGGTACCGATTTTACCGTTACGGCCTTAACCTTTCCCTTCAAATCTTCATGATACCGGGTTCG
1 TATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATAT-TTCATGGTACTGGATTCA
** * * * * * * * *
26354980 CCGTTACGGCCTTAA-CCTTTCCCAT--CATATTTCATGGTACTGGGTTCGCCGTTGTGGCATCT
65 CCGTTGTGGCCTCAATCC-TTCCCATCACATCTTTTAAGGTACCGGGTTCGCCGTTGCGGCCTCA
* * ***
26355042 ATCTTTCCCATCTCGTCTT
129 ACCTTTCCCTTCAAATCTT
* * * * *
26355061 CTAAGGTTCCGGGTTCATCGTTGTGGCCTCAATCTTTC
1 -TATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTC
26355099 TTTTCAAATC
Statistics
Matches: 373, Mismatches: 100, Indels: 13
0.77 0.21 0.03
Matches are distributed among these distances:
146 42 0.11
147 146 0.39
148 185 0.50
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.36
Consensus pattern (147 bp):
TATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATTTCATGGTACTGGATTCAC
CGTTGTGGCCTCAATCCTTCCCATCACATCTTTTAAGGTACCGGGTTCGCCGTTGCGGCCTCAAC
CTTTCCCTTCAAATCTT
Found at i:26355110 original size:196 final size:198
Alignment explanation
Indices: 26354544--26355111 Score: 592
Period size: 196 Copynumber: 2.9 Consensus size: 198
26354534 TCACCGTTGT
* * * *
26354544 GGCCTCAACCCTTCCCATCACATCTTTTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCC
1 GGCCTTAACCCTTCCCATCAAATCTTTCAAGATACCGGGTTCACCGTTGCGGCCTCAACCTTTCC
* * * * * * *
26354609 TTTCAAATCTTTATGGTACCGGGTTCACTGTTGTGGCCTCAACCTTTCCCATCACAT-TTC-ATG
66 TATCATAT-TTCATGGTACTGGGTTCACCGTTGTGGCCTCAATCTTTCCCATCACATCTTCTAAG
* * * * * **
26354672 GTACCGGATTCGTCGTTGTGGCCTCAATCCTTCTCAT-AACGTCTTCTAAGGTACCGAGTTTGTC
130 GTTCCGGGTTCGTCGTTGTGGCCTCAATCTTTCTCTTCAA-ATCTTCTAAGGTACCGAGTTTACC
*
26354736 GTTGC
194 GTTAC
* * * * *
26354741 GGTCTTAACCCTTCCCATCACATCTTTTAAGGTATCGGGTTCACCGTTGCGGCCTCAACCTTTCC
1 GGCCTTAACCCTTCCCATCAAATCTTTCAAGATACCGGGTTCACCGTTGCGGCCTCAACCTTTCC
* * * ** *
26354806 TATCATGTTTCATGGTACTAGATTCACCGTTGCAGCCTCAATCTTTCCCATCACATCTTTTAAGG
66 TATCATATTTCATGGTACTGGGTTCACCGTTGTGGCCTCAATCTTTCCCATCACATCTTCTAAGG
* * * * * * *
26354871 TAT-TGGGTTCGCCATTGTAGCCTCAA-CATTTCCCTTCAAATCTT-TATGGTACCGATTTTACC
131 T-TCCGGGTTCGTCGTTGTGGCCTCAATC-TTTCTCTTCAAATCTTCTAAGGTACCGAGTTTACC
26354933 GTTAC
194 GTTAC
* * * * * *
26354938 GGCCTTAACCTTTCCCTTCAAATC-TTCATGATACCGGGTTCGCCGTTACGGCCTTAACCTTTCC
1 GGCCTTAACCCTTCCCATCAAATCTTTCAAGATACCGGGTTCACCGTTGCGGCCTCAACCTTTCC
* * * * * *
26355002 CATCATATTTCATGGTACTGGGTTCGCCGTTGTGGCATCTATCTTTCCCATCTCGTCTTCTAAGG
66 TATCATATTTCATGGTACTGGGTTCACCGTTGTGGCCTCAATCTTTCCCATCACATCTTCTAAGG
* *
26355067 TTCCGGGTTCATCGTTGTGGCCTCAATCTTTCTTTTCAAATCTTC
131 TTCCGGGTTCGTCGTTGTGGCCTCAATCTTTCTCTTCAAATCTTC
26355112 ATGTTTCCTT
Statistics
Matches: 302, Mismatches: 61, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
195 1 0.00
196 159 0.53
197 109 0.36
198 31 0.10
199 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.17, T:0.36
Consensus pattern (198 bp):
GGCCTTAACCCTTCCCATCAAATCTTTCAAGATACCGGGTTCACCGTTGCGGCCTCAACCTTTCC
TATCATATTTCATGGTACTGGGTTCACCGTTGTGGCCTCAATCTTTCCCATCACATCTTCTAAGG
TTCCGGGTTCGTCGTTGTGGCCTCAATCTTTCTCTTCAAATCTTCTAAGGTACCGAGTTTACCGT
TAC
Found at i:26357022 original size:12 final size:11
Alignment explanation
Indices: 26356989--26357029 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
26356979 TTTCGACCAA
*
26356989 TCTTTTCTTCC
1 TCTTTTCTTCT
26357000 TCTTCTTCTTCT
1 TCTT-TTCTTCT
26357012 TCTTTTCCTTCT
1 TCTTTT-CTTCT
26357024 TCTTTT
1 TCTTTT
26357030 AATTTTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 6 0.22
12 21 0.78
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (11 bp):
TCTTTTCTTCT
Found at i:26360885 original size:30 final size:30
Alignment explanation
Indices: 26360845--26361310 Score: 391
Period size: 30 Copynumber: 15.6 Consensus size: 30
26360835 ATGACAATTT
* *
26360845 GGGGTTAAAATATGATTTTGGAAAAGTTTA
1 GGGGTTAAAATGTAATTTTGGAAAAGTTTA
* *
26360875 GGGGTAAAAATGTGATTTT-GAAAAGGTTTA
1 GGGGTTAAAATGTAATTTTGGAAAA-GTTTA
* * *
26360905 GGGATTAAAATGTGATTTTGTG-AAGGTTT-
1 GGGGTTAAAATGTAATTTTG-GAAAAGTTTA
* * **
26360934 GAGGTTAAAA-GTTGATTTTGGGGAAGTTTA
1 GGGGTTAAAATG-TAATTTTGGAAAAGTTTA
* * *
26360964 -GGGTCAAAATATGATTTTGGGAAAAGTTTTA
1 GGGGTTAAAATGTAATTTT-GGAAAAG-TTTA
*
26360995 -GGGTTAAAATGTAATTTTGAAAAAGTTTA
1 GGGGTTAAAATGTAATTTTGGAAAAGTTTA
* *
26361024 GTGGTTAAAATGTAATTTTAGAGAAA-TTTA
1 GGGGTTAAAATGTAATTTTGGA-AAAGTTTA
* * * *
26361054 -GGGTGAAAATATAATTTTAGAAATGTTTTA
1 GGGGTTAAAATGTAATTTTGGAAAAG-TTTA
* * * *
26361084 -AGGTCAAAATGTAATTTTAGAGAAGTTTA
1 GGGGTTAAAATGTAATTTTGGAAAAGTTTA
26361113 GGGGTTAAAATGTAATTTTGGAAAAGTTTA
1 GGGGTTAAAATGTAATTTTGGAAAAGTTTA
* *
26361143 GGGGTAAAAATGTGATTTTGGAAAAGGTTTA
1 GGGGTTAAAATGTAATTTTGGAAAA-GTTTA
*
26361174 GGGGTTAAAATGTAATTTT-AAATAAGTTTA
1 GGGGTTAAAATGTAATTTTGGAA-AAGTTTA
* * * *
26361204 AGGGTTAAAATGCAATTTTAGAGAAGTTTA
1 GGGGTTAAAATGTAATTTTGGAAAAGTTTA
**
26361234 -ATGTTAAAATGTAATTTT-GAAAATGTTTA
1 GGGGTTAAAATGTAATTTTGGAAAA-GTTTA
* * * *
26361263 GGGGTAAAAATATGATTTTGGAAAGGTTT-
1 GGGGTTAAAATGTAATTTTGGAAAAGTTTA
* *
26361292 GGGGTCAAAATGTGATTTT
1 GGGGTTAAAATGTAATTTT
26361311 TGGGTAAAAT
Statistics
Matches: 361, Mismatches: 55, Indels: 41
0.79 0.12 0.09
Matches are distributed among these distances:
28 8 0.02
29 103 0.29
30 196 0.54
31 53 0.15
32 1 0.00
ACGTcount: A:0.37, C:0.01, G:0.25, T:0.37
Consensus pattern (30 bp):
GGGGTTAAAATGTAATTTTGGAAAAGTTTA
Found at i:26361002 original size:89 final size:89
Alignment explanation
Indices: 26360845--26361310 Score: 403
Period size: 89 Copynumber: 5.2 Consensus size: 89
26360835 ATGACAATTT
* * *
26360845 GGGGTTAAAATATGATTTTGGAAAAGTTTAGGGGTAAAAATGTGATTTT-GAAAAGGTTTAGGGA
1 GGGGTTAAAATGTAATTTTGGAAAAGTTTAGGGGTAAAAATATGATTTTGGAAAAGGTTTAGGG-
* *
26360909 TTAAAATGTGATTTTGTGAAGGTTT-
65 TTAAAATGTAATTTTGAGAA-GTTTA
* * ** * *
26360934 GAGGTTAAAA-GTTGATTTTGGGGAAGTTTA-GGGTCAAAATATGATTTTGGGAAAAGTTTTAGG
1 GGGGTTAAAATG-TAATTTTGGAAAAGTTTAGGGGTAAAAATATGATTTT-GGAAAAGGTTTAGG
*
26360997 GTTAAAATGTAATTTTGAAAAAGTTTA
64 GTTAAAATGTAATTTTG-AGAAGTTTA
* * * * * * * *
26361024 GTGGTTAAAATGTAATTTTAGAGAAA-TTTA-GGGTGAAAATATAATTTTAGAAATGTTTTAAGG
1 GGGGTTAAAATGTAATTTTGGA-AAAGTTTAGGGGTAAAAATATGATTTTGGAAAAGGTTTAGGG
*
26361087 TCAAAATGTAATTTTAGAGAAGTTTA
65 TTAAAATGTAATTTT-GAGAAGTTTA
*
26361113 GGGGTTAAAATGTAATTTTGGAAAAGTTTAGGGGTAAAAATGTGATTTTGGAAAAGGTTTAGGGG
1 GGGGTTAAAATGTAATTTTGGAAAAGTTTAGGGGTAAAAATATGATTTTGGAAAAGGTTTA-GGG
* *
26361178 TTAAAATGTAATTTTAAATAAGTTTA
65 TTAAAATGTAATTTT-GAGAAGTTTA
* * * * ** * * * *
26361204 AGGGTTAAAATGCAATTTTAGAGAAGTTTA-ATGTTAAAATGTAATTTT-GAAAATGTTTAGGGG
1 GGGGTTAAAATGTAATTTTGGAAAAGTTTAGGGGTAAAAATATGATTTTGGAAAAGGTTTA-GGG
* * *
26361267 TAAAAATATGATTTTG-GAAAGGTTT-
65 TTAAAATGTAATTTTGAG-AA-GTTTA
* *
26361292 GGGGTCAAAATGTGATTTT
1 GGGGTTAAAATGTAATTTT
26361311 TGGGTAAAAT
Statistics
Matches: 312, Mismatches: 52, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
88 36 0.12
89 132 0.42
90 90 0.29
91 54 0.17
ACGTcount: A:0.37, C:0.01, G:0.25, T:0.37
Consensus pattern (89 bp):
GGGGTTAAAATGTAATTTTGGAAAAGTTTAGGGGTAAAAATATGATTTTGGAAAAGGTTTAGGGT
TAAAATGTAATTTTGAGAAGTTTA
Found at i:26361302 original size:59 final size:58
Alignment explanation
Indices: 26360845--26361310 Score: 372
Period size: 59 Copynumber: 7.8 Consensus size: 58
26360835 ATGACAATTT
* * * *
26360845 GGGGTTAAAATATGATTTTGGAAAAGTTTAGGGGTAAAAATGTGATTTTGAAAAGGTTTA
1 GGGGTTAAAATGTGATTTTGGAAAGGTTT-GGGGTTAAAATGTAATTTTGAAAA-GTTTA
* * * **
26360905 GGGATTAAAATGTGATTTTGTG-AAGGTTTGAGGTTAAAA-GTTGATTTTGGGGAAGTTTA
1 GGGGTTAAAATGTGATTTTG-GAAAGGTTTGGGGTTAAAATG-TAATTTT-GAAAAGTTTA
* * * *
26360964 -GGGTCAAAATATGATTTTGGGAAAAGTTTTAGGGTTAAAATGTAATTTTGAAAAAGTTTA
1 GGGGTTAAAATGTGATTTT-GG-AAAGGTTTGGGGTTAAAATGTAATTTTG-AAAAGTTTA
* * * * * *
26361024 GTGGTTAAAATGTAATTTTAGAGAAA--TTTAGGGTGAAAATATAATTTTAGAAATGTTTTA
1 GGGGTTAAAATGTGATTTT-G-GAAAGGTTTGGGGTTAAAATGTAATTTT-GAAAAG-TTTA
* * * *
26361084 -AGGTCAAAATGTAATTTTAGAGAA-GTTTAGGGGTTAAAATGTAATTTTGGAAAAGTTTA
1 GGGGTTAAAATGTGATTTTGGA-AAGGTTT-GGGGTTAAAATGTAATTTT-GAAAAGTTTA
* *
26361143 GGGGTAAAAATGTGATTTTGGAAAAGGTTTAGGGGTTAAAATGTAATTTTAAATAAGTTTA
1 GGGGTTAAAATGTGATTTTGG-AAAGGTTT-GGGGTTAAAATGTAATTTTGAA-AAGTTTA
* ** * ***
26361204 AGGGTTAAAATGCAATTTTAGAGAA-GTTTAATGTTAAAATGTAATTTTGAAAATGTTTA
1 GGGGTTAAAATGTGATTTTGGA-AAGGTTTGGGGTTAAAATGTAATTTTGAAAA-GTTTA
* * * *
26361263 GGGGTAAAAATATGATTTTGGAAAGGTTTGGGGTCAAAATGTGATTTT
1 GGGGTTAAAATGTGATTTTGGAAAGGTTTGGGGTTAAAATGTAATTTT
26361311 TGGGTAAAAT
Statistics
Matches: 327, Mismatches: 57, Indels: 45
0.76 0.13 0.10
Matches are distributed among these distances:
57 2 0.01
58 23 0.07
59 126 0.39
60 105 0.32
61 70 0.21
62 1 0.00
ACGTcount: A:0.37, C:0.01, G:0.25, T:0.37
Consensus pattern (58 bp):
GGGGTTAAAATGTGATTTTGGAAAGGTTTGGGGTTAAAATGTAATTTTGAAAAGTTTA
Found at i:26362133 original size:3 final size:3
Alignment explanation
Indices: 26362125--26362151 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
26362115 CTCTTTTTAT
26362125 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
26362152 ATTTTTAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26368253 original size:244 final size:244
Alignment explanation
Indices: 26367824--26368314 Score: 955
Period size: 244 Copynumber: 2.0 Consensus size: 244
26367814 TCCTTAAACG
* *
26367824 ATTAATGTATATTATGGGGATGAGTGAGGAATGAGTTTCAGCACGGATTAAAGTGAAAGGTGACC
1 ATTAATGTATATTACGGGGATGAGTGAGGAATGAGTTTCAACACGGATTAAAGTGAAAGGTGACC
26367889 ATAAGTGCATTACTTGGAGGAGTTTGCGAGATCTGATCCTAGCACATCCAGATGCGAGAAAGAAA
66 ATAAGTGCATTACTTGGAGGAGTTTGCGAGATCTGATCCTAGCACATCCAGATGCGAGAAAGAAA
26367954 GTCGACATCTTCGCCCTAAGTTTGTATGGTTTGGTCATTTTTCCTAAGGCATTGGGGCATGTAAA
131 GTCGACATCTTCGCCCTAAGTTTGTATGGTTTGGTCATTTTTCCTAAGGCATTGGGGCATGTAAA
*
26368019 AGACGCAGTCACTGACCTTTTTGATCATCTCGACAAAAGGGTTACTCCT
196 AGACGCAGTCACTGACCTTTTCGATCATCTCGACAAAAGGGTTACTCCT
26368068 ATTAATGTATATTACGGGGATGAGTGAGGAATGAGTTTCAACACGGATTAAAGTGAAAGGTGACC
1 ATTAATGTATATTACGGGGATGAGTGAGGAATGAGTTTCAACACGGATTAAAGTGAAAGGTGACC
26368133 ATAAGTGCATTACTTGGAGGAGTTTGCGAGATCTGATCCTAGCACATCCAGATGCGAGAAAGAAA
66 ATAAGTGCATTACTTGGAGGAGTTTGCGAGATCTGATCCTAGCACATCCAGATGCGAGAAAGAAA
26368198 GTCGACATCTTCGCCCTAAGTTTGTATGGTTTGGTCATTTTTCCTAAGGCATTGGGGCATGTAAA
131 GTCGACATCTTCGCCCTAAGTTTGTATGGTTTGGTCATTTTTCCTAAGGCATTGGGGCATGTAAA
26368263 AGACGCAGTCACTGACCTTTTCGATCATCTCGACAAAAGGGTTACTCCT
196 AGACGCAGTCACTGACCTTTTCGATCATCTCGACAAAAGGGTTACTCCT
26368312 ATT
1 ATT
26368315 TCGACAATTT
Statistics
Matches: 244, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
244 244 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (244 bp):
ATTAATGTATATTACGGGGATGAGTGAGGAATGAGTTTCAACACGGATTAAAGTGAAAGGTGACC
ATAAGTGCATTACTTGGAGGAGTTTGCGAGATCTGATCCTAGCACATCCAGATGCGAGAAAGAAA
GTCGACATCTTCGCCCTAAGTTTGTATGGTTTGGTCATTTTTCCTAAGGCATTGGGGCATGTAAA
AGACGCAGTCACTGACCTTTTCGATCATCTCGACAAAAGGGTTACTCCT
Found at i:26376791 original size:52 final size:52
Alignment explanation
Indices: 26376702--26376882 Score: 229
Period size: 52 Copynumber: 3.5 Consensus size: 52
26376692 ATTTCTCTTC
* * * *
26376702 ATTCATATACTCACGATTACACATAGCCA-CTGGACCTCATAATCCGTAAAGA
1 ATTCATATACTCACGATGACACAGAGCCATC-GAACCTCATAATTCGTAAAGA
* * * * *
26376754 ATTCATATAATCACGATGACATAGAGTCATCGAACCTCTTAATTCGTAAAGG
1 ATTCATATACTCACGATGACACAGAGCCATCGAACCTCATAATTCGTAAAGA
* * *
26376806 ACTCATATACTCACGATGACACATAGCCATCGGACCTCATAATTCGTAAAGA
1 ATTCATATACTCACGATGACACAGAGCCATCGAACCTCATAATTCGTAAAGA
*
26376858 ATTCATATACTCACAATGACACAGA
1 ATTCATATACTCACGATGACACAGA
26376883 CAATGACACA
Statistics
Matches: 108, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
52 107 0.99
53 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.25
Consensus pattern (52 bp):
ATTCATATACTCACGATGACACAGAGCCATCGAACCTCATAATTCGTAAAGA
Found at i:26376887 original size:12 final size:12
Alignment explanation
Indices: 26376870--26376894 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26376860 TCATATACTC
26376870 ACAATGACACAG
1 ACAATGACACAG
26376882 ACAATGACACAG
1 ACAATGACACAG
26376894 A
1 A
26376895 GTCATCGGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.16, T:0.08
Consensus pattern (12 bp):
ACAATGACACAG
Found at i:26376901 original size:64 final size:64
Alignment explanation
Indices: 26376821--26376944 Score: 194
Period size: 64 Copynumber: 1.9 Consensus size: 64
26376811 TATACTCACG
* *
26376821 ATGACACATAGCCATCGGACCTCATAATTCGTAAAGAATTCATATACTCACAATGACACAGACA
1 ATGACACAGAGCCATCGGACCTCATAATTCGTAAAGAACTCATATACTCACAATGACACAGACA
* * * *
26376885 ATGACACAGAGTCATCGGACCTCTTAATTCGTAAAGGACTCATATACTCACGATGACACA
1 ATGACACAGAGCCATCGGACCTCATAATTCGTAAAGAACTCATATACTCACAATGACACA
26376945 AAATCATCAG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.23
Consensus pattern (64 bp):
ATGACACAGAGCCATCGGACCTCATAATTCGTAAAGAACTCATATACTCACAATGACACAGACA
Found at i:26376942 original size:52 final size:52
Alignment explanation
Indices: 26376882--26377017 Score: 218
Period size: 52 Copynumber: 2.6 Consensus size: 52
26376872 AATGACACAG
*
26376882 ACAATGACACAGAGTCATCGGACCTCTTAATTCGTAAAGGACTCATATACTC
1 ACAATGACACAAAGTCATCGGACCTCTTAATTCGTAAAGGACTCATATACTC
* * * * *
26376934 ACGATGACACAAAATCATCAGACCCCTTAATCCGTAAAGGACTCATATACTC
1 ACAATGACACAAAGTCATCGGACCTCTTAATTCGTAAAGGACTCATATACTC
26376986 ACAATGACACAAAGTCATCGGACCTCTTAATT
1 ACAATGACACAAAGTCATCGGACCTCTTAATT
26377018 TACGGCTTAA
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.24
Consensus pattern (52 bp):
ACAATGACACAAAGTCATCGGACCTCTTAATTCGTAAAGGACTCATATACTC
Found at i:26376980 original size:116 final size:116
Alignment explanation
Indices: 26376769--26376996 Score: 357
Period size: 116 Copynumber: 2.0 Consensus size: 116
26376759 TATAATCACG
* * *
26376769 ATGACATAGAGTCATCGAACCTCTTAATTCGTAAAGGACTCATATACTCACGATGACACATAGCC
1 ATGACACAGAGTCATCGAACCTCTTAATTCGTAAAGGACTCATATACTCACGATGACACAAAACC
* * * *
26376834 ATCGGACCTCATAATTCGTAAAGAATTCATATACTCACAATGACACAGACA
66 ATCAGACCCCATAATCCGTAAAGAACTCATATACTCACAATGACACAGACA
* *
26376885 ATGACACAGAGTCATCGGACCTCTTAATTCGTAAAGGACTCATATACTCACGATGACACAAAATC
1 ATGACACAGAGTCATCGAACCTCTTAATTCGTAAAGGACTCATATACTCACGATGACACAAAACC
* *
26376950 ATCAGACCCCTTAATCCGTAAAGGACTCATATACTCACAATGACACA
66 ATCAGACCCCATAATCCGTAAAGAACTCATATACTCACAATGACACA
26376997 AAGTCATCGG
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
116 101 1.00
ACGTcount: A:0.38, C:0.25, G:0.14, T:0.23
Consensus pattern (116 bp):
ATGACACAGAGTCATCGAACCTCTTAATTCGTAAAGGACTCATATACTCACGATGACACAAAACC
ATCAGACCCCATAATCCGTAAAGAACTCATATACTCACAATGACACAGACA
Found at i:26387692 original size:52 final size:52
Alignment explanation
Indices: 26387632--26387759 Score: 195
Period size: 52 Copynumber: 2.5 Consensus size: 52
26387622 ATTTCTCTTC
* *
26387632 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATTCGT-AAGG
1 ATTCATATACTCACGATGACACAGAGCCATCGGACCTCATAATACGTAAAGG
* *
26387683 AATTCATATACTCACGATGACACAGAGTCATCGGACCTCTTAATACGTAAAGG
1 -ATTCATATACTCACGATGACACAGAGCCATCGGACCTCATAATACGTAAAGG
*
26387736 ACTCATATACTCACGATGACACAG
1 ATTCATATACTCACGATGACACAG
26387760 TCATCAGACC
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
52 66 0.94
53 4 0.06
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (52 bp):
ATTCATATACTCACGATGACACAGAGCCATCGGACCTCATAATACGTAAAGG
Found at i:26388682 original size:20 final size:22
Alignment explanation
Indices: 26388636--26388682 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 22
26388626 CATAATTAGC
26388636 CTAATTAATCACTTATTTAGCTT
1 CTAATTAATCAC-TATTTAGCTT
26388659 -TAATTAATCA-TATTTA-CTT
1 CTAATTAATCACTATTTAGCTT
26388678 CTAAT
1 CTAAT
26388683 ATATCTCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 3 0.13
20 10 0.43
22 10 0.43
ACGTcount: A:0.34, C:0.15, G:0.02, T:0.49
Consensus pattern (22 bp):
CTAATTAATCACTATTTAGCTT
Found at i:26391637 original size:94 final size:93
Alignment explanation
Indices: 26391475--26391966 Score: 621
Period size: 93 Copynumber: 5.3 Consensus size: 93
26391465 GCCAAGTAAA
* * * * * *
26391475 CACCAAATCCTATACCTTTGAGTTATAGTGGGGTCAGATTAAAACAACGAGGCAGATCTCAACGT
1 CACCAAATCCTATACCCTTGAGTTGTAGT-GGGTCGGATTAAAACAATGAAGCAGATCTCAACAT
*
26391540 CCTTGAGGTTACAGTGAAGTGGAGTGAAG
65 CCTTGAGGTTACAGTGGAGTGGAGTGAAG
** *
26391569 CACCAAATCCTATATTCTTGAGTTGTAGTGGGTCGGATTAAAACAAATGAAGCAGATCTTAACAT
1 CACCAAATCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAAC-AATGAAGCAGATCTCAACAT
**
26391634 CCTTGAGGTTACAGTAAAGTGGAGTGAAG
65 CCTTGAGGTTACAGTGGAGTGGAGTGAAG
* * * * *
26391663 CACCAAATCCTATACCCCTAAGTTGTAGTGGGTCGAATTAAAACAATGAGGCAGATCTCAACGTT
1 CACCAAATCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAAC-AT
*
26391728 CC-TGAGGTTACAGTGGAGTAGAGTGAAG
65 CCTTGAGGTTACAGTGGAGTGGAGTGAAG
* * *
26391756 CACCAAATCCTATACCCTTGAGTTGCAGTGGGTCAGATTAAAACAATGATGCAGATCTCAACATC
1 CACCAAATCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAACATC
*
26391821 TTTGAGGTTACAGTGGAGTGGAGTGAAG
66 CTTGAGGTTACAGTGGAGTGGAGTGAAG
* * * * * *
26391849 CACC-AA-CCTTATACCCCTGAGTCGTAGTGGGTCGAATTAAAATAATGAAGCAAATCTCAACGT
1 CACCAAATCC-TATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAACAT
* *
26391912 CCCTGAGCTTACAGTGGAGTGGAGTGAAG
65 CCTTGAGGTTACAGTGGAGTGGAGTGAAG
* * * *
26391941 CACCAGATCTTATACCCCTAAGTTGT
1 CACCAAATCCTATACCCTTGAGTTGT
26391967 TGATCGGCCT
Statistics
Matches: 346, Mismatches: 46, Indels: 13
0.85 0.11 0.03
Matches are distributed among these distances:
91 2 0.01
92 79 0.23
93 153 0.44
94 112 0.32
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (93 bp):
CACCAAATCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAACATC
CTTGAGGTTACAGTGGAGTGGAGTGAAG
Found at i:26391797 original size:187 final size:186
Alignment explanation
Indices: 26391475--26391957 Score: 677
Period size: 187 Copynumber: 2.6 Consensus size: 186
26391465 GCCAAGTAAA
** * *
26391475 CACCAAATCCTATACCTTTGAGTTATAGTGGGGTC-AGATTAAAACAACGAGGCAGATCTCAACG
1 CACCAAATCCTATACCCCTGAGTTGTAGT-GGGTCGA-ATTAAAACAATGAGGCAGATCTCAACG
* ** *
26391539 -TCCTTGAGGTTACAGTGAAGTGGAGTGAAGCACCAAATCCTATATTCTTGAGTTGTAGTGGGTC
64 TTCC-TGAGGTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCTTGAGTTGCAGTGGGTC
* *
26391603 GGATTAAAACAAATGAAGCAGATCTTAACATCCTTGAGGTTACAGTAAAGTGGAGTGAAG
128 AGATTAAAAC-AATGAAGCAGATCTCAACATCCTTGAGGTTACAGTAAAGTGGAGTGAAG
*
26391663 CACCAAATCCTATACCCCTAAGTTGTAGTGGGTCGAATTAAAACAATGAGGCAGATCTCAACGTT
1 CACCAAATCCTATACCCCTGAGTTGTAGTGGGTCGAATTAAAACAATGAGGCAGATCTCAACGTT
*
26391728 CCTGAGGTTACAGTGGAGTAGAGTGAAGCACCAAATCCTATACCCTTGAGTTGCAGTGGGTCAGA
66 CCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCTTGAGTTGCAGTGGGTCAGA
* * **
26391793 TTAAAACAATGATGCAGATCTCAACATCTTTGAGGTTACAGTGGAGTGGAGTGAAG
131 TTAAAACAATGAAGCAGATCTCAACATCCTTGAGGTTACAGTAAAGTGGAGTGAAG
* * * *
26391849 CACC-AA-CCTTATACCCCTGAGTCGTAGTGGGTCGAATTAAAATAATGAAGCAAATCTCAACGT
1 CACCAAATCC-TATACCCCTGAGTTGTAGTGGGTCGAATTAAAACAATGAGGCAGATCTCAACGT
* * * *
26391912 CCCTGAGCTTACAGTGGAGTGGAGTGAAGCACCAGATCTTATACCC
65 TCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCC
26391958 CTAAGTTGTT
Statistics
Matches: 266, Mismatches: 26, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
184 2 0.01
185 92 0.35
186 48 0.18
187 95 0.36
188 29 0.11
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (186 bp):
CACCAAATCCTATACCCCTGAGTTGTAGTGGGTCGAATTAAAACAATGAGGCAGATCTCAACGTT
CCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCTTGAGTTGCAGTGGGTCAGA
TTAAAACAATGAAGCAGATCTCAACATCCTTGAGGTTACAGTAAAGTGGAGTGAAG
Found at i:26394619 original size:25 final size:24
Alignment explanation
Indices: 26394591--26394650 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
26394581 TTTGCTCAAG
26394591 TTATATTTTTATAATATATATTATT
1 TTATATTTTT-TAATATATATTATT
* * *
26394616 TTATATTTTGTTTATTTATTTTATT
1 TTATATTTT-TTAATATATATTATT
26394641 TTAT-TTTTTT
1 TTATATTTTTT
26394651 GAAACAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 2 0.06
24 4 0.13
25 24 0.77
26 1 0.03
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (24 bp):
TTATATTTTTTAATATATATTATT
Found at i:26401913 original size:18 final size:18
Alignment explanation
Indices: 26401886--26401920 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26401876 TAGTTTGATA
* *
26401886 TTTGATTTATTCGAATTT
1 TTTGAGTTATTCAAATTT
26401904 TTTGAGTTATTCAAATT
1 TTTGAGTTATTCAAATT
26401921 CGAAAACTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.11, T:0.57
Consensus pattern (18 bp):
TTTGAGTTATTCAAATTT
Found at i:26407852 original size:19 final size:19
Alignment explanation
Indices: 26407828--26407865 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
26407818 AAGTTAATAA
*
26407828 CAAATTTGATTATGGTGGG
1 CAAATTTGATTACGGTGGG
26407847 CAAATTTGATTACGGTGGG
1 CAAATTTGATTACGGTGGG
26407866 TGATATTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.32, T:0.34
Consensus pattern (19 bp):
CAAATTTGATTACGGTGGG
Found at i:26409336 original size:19 final size:19
Alignment explanation
Indices: 26409293--26409338 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26409283 TACAGAAACT
* *
26409293 TACTAACTGTCTCAACTAA
1 TACTAACTGCCTCAACCAA
*
26409312 TACTAACTGCCTTAACCAA
1 TACTAACTGCCTCAACCAA
*
26409331 TGCTAACT
1 TACTAACT
26409339 ACCTAACAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (19 bp):
TACTAACTGCCTCAACCAA
Found at i:26414556 original size:12 final size:12
Alignment explanation
Indices: 26414514--26414557 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
26414504 ACTCAATTCC
*
26414514 ATTTTTCTTATT
1 ATTTTTATTATT
26414526 ATTTTTATTTATT
1 ATTTTTA-TTATT
*
26414539 -TATTTATTATT
1 ATTTTTATTATT
26414550 ATTTTTAT
1 ATTTTTAT
26414558 GAATATAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 5 0.19
12 17 0.63
13 5 0.19
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (12 bp):
ATTTTTATTATT
Found at i:26419643 original size:8 final size:8
Alignment explanation
Indices: 26419625--26419686 Score: 53
Period size: 8 Copynumber: 8.0 Consensus size: 8
26419615 CTTCACCAAA
26419625 AAAAAAGGG
1 AAAAAA-GG
26419634 AAAAAAGG
1 AAAAAAGG
26419642 AAAAAA-G
1 AAAAAAGG
26419649 AGAAAAA-G
1 A-AAAAAGG
26419657 --AAAAGG
1 AAAAAAGG
*
26419663 AAAAAAAG
1 AAAAAAGG
26419671 AAGAAAA-G
1 AA-AAAAGG
26419679 AAAAAAGG
1 AAAAAAGG
26419687 GAAGGTCGAG
Statistics
Matches: 46, Mismatches: 1, Indels: 13
0.77 0.02 0.22
Matches are distributed among these distances:
5 4 0.09
6 1 0.02
7 6 0.13
8 25 0.54
9 10 0.22
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (8 bp):
AAAAAAGG
Found at i:26419660 original size:21 final size:22
Alignment explanation
Indices: 26419636--26419682 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
26419626 AAAAAGGGAA
26419636 AAAAGG-AAAAAAG-AGAAAAAG
1 AAAAGGAAAAAAAGAAG-AAAAG
26419657 AAAAGGAAAAAAAGAAGAAAAG
1 AAAAGGAAAAAAAGAAGAAAAG
26419679 AAAA
1 AAAA
26419683 AAGGGAAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 6 0.25
22 16 0.67
23 2 0.08
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (22 bp):
AAAAGGAAAAAAAGAAGAAAAG
Found at i:26419660 original size:22 final size:23
Alignment explanation
Indices: 26419635--26419683 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
26419625 AAAAAAGGGA
26419635 AAAAAGG-AAAAAAG-AGAAAA-
1 AAAAAGGAAAAAAAGAAGAAAAG
26419655 AGAAAAGGAAAAAAAGAAGAAAAG
1 A-AAAAGGAAAAAAAGAAGAAAAG
26419679 AAAAA
1 AAAAA
26419684 AGGGAAGGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 1 0.04
21 6 0.24
22 7 0.28
23 10 0.40
24 1 0.04
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (23 bp):
AAAAAGGAAAAAAAGAAGAAAAG
Found at i:26419664 original size:29 final size:30
Alignment explanation
Indices: 26419622--26419685 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
26419612 AAACTTCACC
*
26419622 AAAAA-AAAAGGGAAAAAAGGAA-AAAAGA
1 AAAAAGAAAAGGGAAAAAAAGAAGAAAAGA
26419650 GAAAAAGAAAA-GGAAAAAAAGAAGAAAAGA
1 -AAAAAGAAAAGGGAAAAAAAGAAGAAAAGA
26419680 AAAAAG
1 AAAAAG
26419686 GGAAGGTCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 22 0.69
30 10 0.31
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (30 bp):
AAAAAGAAAAGGGAAAAAAAGAAGAAAAGA
Found at i:26419690 original size:17 final size:18
Alignment explanation
Indices: 26419625--26419690 Score: 66
Period size: 17 Copynumber: 3.7 Consensus size: 18
26419615 CTTCACCAAA
26419625 AAAAAAGGGAA-AAAAGG
1 AAAAAAGGGAAGAAAAGG
*
26419642 AAAAAAGAGAAAAAGAAAAGG
1 AAAAAAG-G--GAAGAAAAGG
*
26419663 AAAAAA-AGAAGAAAA-G
1 AAAAAAGGGAAGAAAAGG
26419679 AAAAAAGGGAAG
1 AAAAAAGGGAAG
26419691 GTCGAGGTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
16 7 0.17
17 18 0.45
18 1 0.03
20 2 0.05
21 12 0.30
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (18 bp):
AAAAAAGGGAAGAAAAGG
Found at i:26420635 original size:50 final size:50
Alignment explanation
Indices: 26420581--26420677 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
26420571 GTACAGATTG
* * *
26420581 AAGCCACAATGGTAAATCTCATACACCTAAAGTTGTAGAGGGGCAGAATA
1 AAGCCACAATGGCAAATCTCATACACCTAAAGCTATAGAGGGGCAGAATA
** * * * *
26420631 AAGCCGTAATGGCGAATTTTATTCACCTAAAGCTATAGAGGGGCAGA
1 AAGCCACAATGGCAAATCTCATACACCTAAAGCTATAGAGGGGCAGA
26420678 TTGAAGTCAC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (50 bp):
AAGCCACAATGGCAAATCTCATACACCTAAAGCTATAGAGGGGCAGAATA
Found at i:26420837 original size:80 final size:80
Alignment explanation
Indices: 26420737--26421160 Score: 562
Period size: 80 Copynumber: 5.2 Consensus size: 80
26420727 AGTTACAACC
* *
26420737 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCTAATCTTTGACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCTGATCTTTTACCCCGATCATGG
*
26420802 GGTAGATTGAAGAAA
66 GGAAGATTGAAGAAA
* * * *
26420817 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGATGATCATCCGATCTTTTACCCCGATCATGA
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCTGATCTTTTACCCCGATCATG-
26420882 GGCAAATTGAAAGATTGAAGAAA
65 GG------G-AAGATTGAAGAAA
* * *
26420905 TTCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCTGATCTTTTACCCCGATCATGG
* *
26420970 GGAAAATTAAAGAAA
66 GGAAGATTGAAGAAA
* * * **
26420985 TCCAATCTTTTACCCTAACCAGAGGACAAGATTGAAAACCATCTGATCTTTTACCCCAATCATAA
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCTGATCTTTTACCCCGATCATGG
*
26421050 GGCAGATTGAAGAAA
66 GGAAGATTGAAGAAA
* *
26421065 TCCAATCTTTTACCCTAACTAAAGGGCAAGATTGAAGACCCATCTGATCTTTTACCCCGATCAT-
1 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGA-CCATCTGATCTTTTACCCCGATCATG
26421129 GGGACAGATTGAAGAAA
65 GGGA-AGATTGAAGAAA
*
26421146 TCCAATCTTATACCC
1 TCCAATCTTTTACCC
26421161 CGACTATGGG
Statistics
Matches: 301, Mismatches: 33, Indels: 19
0.85 0.09 0.05
Matches are distributed among these distances:
80 174 0.58
81 53 0.18
87 3 0.01
88 71 0.24
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (80 bp):
TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCTGATCTTTTACCCCGATCATGG
GGAAGATTGAAGAAA
Found at i:26420999 original size:39 final size:39
Alignment explanation
Indices: 26420892--26421358 Score: 216
Period size: 39 Copynumber: 11.7 Consensus size: 39
26420882 GGCAAATTGA
* *
26420892 AAGATTGAAGAAATTCAATCTTTTACCCTAA-C-TAGAGGG
1 AAGATTGAAGAAATCCAATCTTTTACCCCAATCAT-G-GGG
* * *
26420931 CAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGG
1 -AAGATTGAAGA-AATCCAATCTTTTACCCCAATCATGGGG
* * * * *
26420972 AAAATTAAAGAAATCCAATCTTTTACCCTAACCA-GAGGAC
1 AAGATTGAAGAAATCCAATCTTTTACCCCAATCATG-GG-G
** **
26421012 AAGATTGAA-AACCATCTGATCTTTTACCCCAATCATAAGG
1 AAGATTGAAGAA--ATCCAATCTTTTACCCCAATCATGGGG
* * * * *
26421052 CAGATTGAAGAAATCCAATCTTTTACCCTAACTAAAGGGC
1 AAGATTGAAGAAATCCAATCTTTTACCCCAA-TCATGGGG
* ** *
26421092 AAGATTGAAGACCCATCTGATCTTTTACCCCGATCAT-GGG
1 AAGATTGAAGA--AATCCAATCTTTTACCCCAATCATGGGG
* *
26421132 ACAGATTGAAGAAATCCAATCTTATACCCCGA-CTATGGGG
1 A-AGATTGAAGAAATCCAATCTTTTACCCCAATC-ATGGGG
* * *
26421172 TAGATTGAAGCAATCCAATCTTTTACCCTAA-C-TAGAGGG
1 AAGATTGAAGAAATCCAATCTTTTACCCCAATCAT-G-GGG
* * * * ** * *
26421211 ATGATTGACGACCATCCGATCTCATACCTCGATCATGGGG
1 AAGATTGAAGA-AATCCAATCTTTTACCCCAATCATGGGG
* * * * * * *
26421251 CAGTTTGAAGTAATCCAATTTTTTACCCTAACCA-GAGAG
1 AAGATTGAAGAAATCCAATCTTTTACCCCAATCATG-GGG
* * * * * * * * *
26421290 TATATTAAAGACCATCAAATCTCTTACCTCGACCATGGGG
1 AAGATTGAAGA-AATCCAATCTTTTACCCCAATCATGGGG
*
26421330 CAGATTGAA-ATAATCCAATCTTTTACCCC
1 AAGATTGAAGA-AATCCAATCTTTTACCCC
26421359 TAAAACTATA
Statistics
Matches: 308, Mismatches: 96, Indels: 47
0.68 0.21 0.10
Matches are distributed among these distances:
37 1 0.00
38 4 0.01
39 130 0.42
40 100 0.32
41 54 0.18
42 18 0.06
43 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (39 bp):
AAGATTGAAGAAATCCAATCTTTTACCCCAATCATGGGG
Found at i:26421017 original size:168 final size:160
Alignment explanation
Indices: 26420737--26421160 Score: 589
Period size: 168 Copynumber: 2.6 Consensus size: 160
26420727 AGTTACAACC
* * *
26420737 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCTAATCTTTGACCCCGATCATGG
1 TCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCTGATCTTTTACCCCGATCATGG
* * * ** *
26420802 GGTAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGATGATCATCCGATCTT
66 GGAAGATTGAAGAAATCCAATCTTTTACCCTAACCAGAGGACAAGATTGAAAACCATCCGATCTT
* *
26420867 TTACCCCGATCATGAGGCAAATTGAAAGATTGAAGAAA
131 TTACCCCAATCATAAGGC--------AGATTGAAGAAA
* *
26420905 TTCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCTGATCTTTTACCCCGATCATGG
* * *
26420970 GGAAAATTAAAGAAATCCAATCTTTTACCCTAACCAGAGGACAAGATTGAAAACCATCTGATCTT
66 GGAAGATTGAAGAAATCCAATCTTTTACCCTAACCAGAGGACAAGATTGAAAACCATCCGATCTT
26421035 TTACCCCAATCATAAGGCAGATTGAAGAAA
131 TTACCCCAATCATAAGGCAGATTGAAGAAA
*
26421065 TCCAATCTTTTACCCTAACTAAAGGGCAAGATTGAAGACCCATCTGATCTTTTACCCCGATCAT-
1 TCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGA-CCATCTGATCTTTTACCCCGATCATG
*
26421129 GGGACAGATTGAAGAAATCCAATCTTATACCC
65 GGGA-AGATTGAAGAAATCCAATCTTTTACCC
26421161 CGACTATGGG
Statistics
Matches: 232, Mismatches: 22, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
160 52 0.22
161 48 0.21
168 132 0.57
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (160 bp):
TCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCTGATCTTTTACCCCGATCATGG
GGAAGATTGAAGAAATCCAATCTTTTACCCTAACCAGAGGACAAGATTGAAAACCATCCGATCTT
TTACCCCAATCATAAGGCAGATTGAAGAAA
Found at i:26421160 original size:120 final size:118
Alignment explanation
Indices: 26421030--26421278 Score: 311
Period size: 120 Copynumber: 2.1 Consensus size: 118
26421020 AAACCATCTG
26421030 ATCTTTTACCCCAA-TCATAAGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAAAGGGCAA
1 ATCTTTTACCCCAACT-ATAAGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAAAGGG-AA
* **
26421094 GATTGAAGACCCATCTGATCTTTTACCCCGATCATGGGACAGATTGAAGAAATCCA
64 GATTGAAGA-CCATCCGATCTCATACCCCGATCATGGGACAGATTGAAGAAATCCA
* * ** * * * *
26421150 ATCTTATACCCCGACTATGGGGTAGATTGAAGCAATCCAATCTTTTACCCTAACTAGAGGGATGA
1 ATCTTTTACCCCAACTATAAGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAAAGGGAAGA
* * * * *
26421215 TTGACGACCATCCGATCTCATACCTCGATCATGGGGCAGTTTGAAGTAATCCA
66 TTGAAGACCATCCGATCTCATACCCCGATCATGGGACAGATTGAAGAAATCCA
*
26421268 ATTTTTTACCC
1 ATCTTTTACCC
26421279 TAACCAGAGA
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
118 48 0.44
119 9 0.08
120 52 0.47
121 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (118 bp):
ATCTTTTACCCCAACTATAAGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAAAGGGAAGA
TTGAAGACCATCCGATCTCATACCCCGATCATGGGACAGATTGAAGAAATCCA
Found at i:26421260 original size:79 final size:79
Alignment explanation
Indices: 26421149--26421357 Score: 258
Period size: 79 Copynumber: 2.6 Consensus size: 79
26421139 GAAGAAATCC
* * * * * *
26421149 AATCTTATACCCCGACTATGGGGTAGATTGAAGCAATCCAATCTTTTACCCTAACTAGAG-GGAT
1 AATCTCATACCTCGACCATGGGGCAGATTGAAGTAATCCAATCTTTTACCCTAACCAGAGAGGAT
* * *
26421213 GATTGACGACCATCC
66 -ATTAAAGACCATCA
* * * * *
26421228 GATCTCATACCTCGATCATGGGGCAGTTTGAAGTAATCCAATTTTTTACCCTAACCAGAGAGTAT
1 AATCTCATACCTCGACCATGGGGCAGATTGAAGTAATCCAATCTTTTACCCTAACCAGAGAGGAT
26421293 ATTAAAGACCATCA
66 ATTAAAGACCATCA
* *
26421307 AATCTCTTACCTCGACCATGGGGCAGATTGAAATAATCCAATCTTTTACCC
1 AATCTCATACCTCGACCATGGGGCAGATTGAAGTAATCCAATCTTTTACCC
26421358 CTAAAACTAT
Statistics
Matches: 109, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
79 106 0.97
80 3 0.03
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (79 bp):
AATCTCATACCTCGACCATGGGGCAGATTGAAGTAATCCAATCTTTTACCCTAACCAGAGAGGAT
ATTAAAGACCATCA
Found at i:26421278 original size:118 final size:120
Alignment explanation
Indices: 26421053--26421278 Score: 321
Period size: 118 Copynumber: 1.9 Consensus size: 120
26421043 ATCATAAGGC
* **
26421053 AGATTGAAGAAATCCAATCTTTTACCCTAACTAAAGGGCAAGATTGAAGACCCATCTGATCTTTT
1 AGATTGAAGAAATCCAATCTTTTACCCTAACTAAAGGGCAAGATTGAAGACCCATCCGATCTCAT
26421118 ACCCCGATCATGGGACAGATTGAAGAAATCCAATCTTATACCCCGACTATGGGGT
66 ACCCCGATCATGGGACAGATTGAAGAAATCCAATCTTATACCCCGACTATGGGGT
* * * *
26421173 AGATTGAAGCAATCCAATCTTTTACCCTAACTAGAGGG-ATGATTGACGA-CCATCCGATCTCAT
1 AGATTGAAGAAATCCAATCTTTTACCCTAACTAAAGGGCAAGATTGAAGACCCATCCGATCTCAT
* * * * * *
26421236 ACCTCGATCATGGGGCAGTTTGAAGTAATCCAATTTTTTACCC
66 ACCCCGATCATGGGACAGATTGAAGAAATCCAATCTTATACCC
26421279 TAACCAGAGA
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
118 48 0.52
119 9 0.10
120 36 0.39
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27
Consensus pattern (120 bp):
AGATTGAAGAAATCCAATCTTTTACCCTAACTAAAGGGCAAGATTGAAGACCCATCCGATCTCAT
ACCCCGATCATGGGACAGATTGAAGAAATCCAATCTTATACCCCGACTATGGGGT
Found at i:26422235 original size:412 final size:411
Alignment explanation
Indices: 26421471--26422294 Score: 1504
Period size: 412 Copynumber: 2.0 Consensus size: 411
26421461 CTGAAGTTGC
* *
26421471 AGAGAAATAGAGTGAAGCTACGAAGGCGAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATA
1 AGAGAAATAGAGTGAAACTACGAAGGCGAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGAATA
26421536 AAGCTACAAGAACAAATCCTATACCCTTAAAGTTGAAGTGGGTCGAATTAAAGTCATTAACAAAT
66 AAGCTACAAGAACAAATCCTATACCCTTAAAGTTGAAGTGGGTCGAATTAAAGTCATTAACAAAT
26421601 CCTATCTCCCTAAAGATGGAGTGGAGCAGGATAAGACTACAACATTAAATCCTACCTTCTTGAGG
131 CCTATCTCCCTAAAGATGGAGTGGAGCAGGATAAGACTACAACATTAAATCCTACCTTCTTGAGG
*
26421666 TTGCAGTGAAGCAAATACCGTGGAATAGAAAAGCTAATAAAGTGAAAGGACAGATGGCTGAAAAT
196 TTGCAGTGAAGCAAATACCGTGGAATAGAAAAGCAAATAAAGTGAAAGGACAGATGGCTGAAAAT
26421731 AAAAAAATCAAAAGTTGAAATTCAGTAAGATCGGACGAAATTGGTCTTCTTTTTCTTTGCTCCAT
261 AAAAAAATCAAAAGTTGAAATTCAGTAAGATCGGACGAAATTGGTCTTCTTTTTCTTTGCTCCAT
* * *
26421796 TTCCGTTACACGATAACGAGCAAAGAGGGGCAGCTGTACAAACTTAATTTCGTCCAGGCCTCGAA
326 TCCCGTTACACGACAACGAGCAAAGAGGGGCAGCTGTACAAACTCAATTTCGTCCAGGCCTCGAA
**
26421861 ACCCAATTTTATTTTTCTTATT
391 A-CCAATTCCATTTTTCTTATT
*
26421883 AGAGAAATAGAGTGAAACTACGAAGGCGAATCCTTATCTCTCTGAAGTTGCAGTAGAGTAGAATA
1 AGAGAAATAGAGTGAAACTACGAAGGCGAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGAATA
26421948 AAGCTACAAGAACAAATCCTATACCCTTAAAGTTGAAGTGGGTCGAATTAAAGTCATTAACAAAT
66 AAGCTACAAGAACAAATCCTATACCCTTAAAGTTGAAGTGGGTCGAATTAAAGTCATTAACAAAT
*
26422013 CCTATCTCCCTAAAGATGGAGTGGAGCAGGATAAGACTACAACATTAAATCCTATCTTCTTGAGG
131 CCTATCTCCCTAAAGATGGAGTGGAGCAGGATAAGACTACAACATTAAATCCTACCTTCTTGAGG
* *
26422078 TTGCAGTGAAGCAAATACCGTGGAATAGAGAAGCAAATAAAGTGAAAGGACAGATGGTTGAAAAT
196 TTGCAGTGAAGCAAATACCGTGGAATAGAAAAGCAAATAAAGTGAAAGGACAGATGGCTGAAAAT
* *
26422143 AAAAAAATTAAAAGTTGAAATTCAGTAGGATCGGACGAAATTGGTCTTCTTTTTCTTTGCTCCAT
261 AAAAAAATCAAAAGTTGAAATTCAGTAAGATCGGACGAAATTGGTCTTCTTTTTCTTTGCTCCAT
*
26422208 TCCCGTTACACGACAACGAGCAAAGAGGGGCAGCTGTACAAACTCAATTTCGTCCGGGCCTCGAA
326 TCCCGTTACACGACAACGAGCAAAGAGGGGCAGCTGTACAAACTCAATTTCGTCCAGGCCTCGAA
26422273 ACCAATTCCATTTTTCTTATT
391 ACCAATTCCATTTTTCTTATT
26422294 A
1 A
26422295 TTTTTATGAA
Statistics
Matches: 397, Mismatches: 15, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
411 19 0.05
412 378 0.95
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (411 bp):
AGAGAAATAGAGTGAAACTACGAAGGCGAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGAATA
AAGCTACAAGAACAAATCCTATACCCTTAAAGTTGAAGTGGGTCGAATTAAAGTCATTAACAAAT
CCTATCTCCCTAAAGATGGAGTGGAGCAGGATAAGACTACAACATTAAATCCTACCTTCTTGAGG
TTGCAGTGAAGCAAATACCGTGGAATAGAAAAGCAAATAAAGTGAAAGGACAGATGGCTGAAAAT
AAAAAAATCAAAAGTTGAAATTCAGTAAGATCGGACGAAATTGGTCTTCTTTTTCTTTGCTCCAT
TCCCGTTACACGACAACGAGCAAAGAGGGGCAGCTGTACAAACTCAATTTCGTCCAGGCCTCGAA
ACCAATTCCATTTTTCTTATT
Found at i:26422441 original size:63 final size:60
Alignment explanation
Indices: 26422289--26422438 Score: 239
Period size: 63 Copynumber: 2.5 Consensus size: 60
26422279 TCCATTTTTC
26422289 TTATTATTTTTATGAATATAAATAAATATAAAATAATATTAATTTTATTTTATTATTTAT
1 TTATTATTTTTATGAATATAAATAAATATAAAATAATATTAATTTTATTTTATTATTTAT
* *
26422349 TTATTTATTATTGTATGAATATAAATAAATGTAAAATAATATTAATTTTGTTTTATTATTTAT
1 TTA-TTATT-TT-TATGAATATAAATAAATATAAAATAATATTAATTTTATTTTATTATTTAT
*
26422412 TTATTA-TTTTATGAATATAAACAAATA
1 TTATTATTTTTATGAATATAAATAAATA
26422439 AATAACAAAC
Statistics
Matches: 83, Mismatches: 4, Indels: 7
0.88 0.04 0.07
Matches are distributed among these distances:
59 16 0.19
60 5 0.06
61 6 0.07
62 5 0.06
63 51 0.61
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.53
Consensus pattern (60 bp):
TTATTATTTTTATGAATATAAATAAATATAAAATAATATTAATTTTATTTTATTATTTAT
Found at i:26430663 original size:21 final size:21
Alignment explanation
Indices: 26430634--26430675 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26430624 ATTTTATCCT
*
26430634 CAATGTTTTTCAATTTCACCC
1 CAATGTTTTTCAATTACACCC
* *
26430655 CAATTTTTTTCGATTACACCC
1 CAATGTTTTTCAATTACACCC
26430676 TTTCTGCTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (21 bp):
CAATGTTTTTCAATTACACCC
Found at i:26438062 original size:7 final size:7
Alignment explanation
Indices: 26438054--26438090 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
26438044 GGCAACTGGA
*
26438054 GAGTGGA
1 GAGTGGG
26438061 GAGTGGG
1 GAGTGGG
26438068 GAGTGGG
1 GAGTGGG
26438075 GAGTGGG
1 GAGTGGG
26438082 GAGTGGG
1 GAGTGGG
26438089 GA
1 GA
26438091 TAGGTCTCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.19, C:0.00, G:0.68, T:0.14
Consensus pattern (7 bp):
GAGTGGG
Found at i:26444962 original size:167 final size:168
Alignment explanation
Indices: 26444686--26445029 Score: 582
Period size: 167 Copynumber: 2.1 Consensus size: 168
26444676 CAGATGATGG
*
26444686 ATATTTAATCTCTTAAAAAGCTTACACAAAGAAGCTCTTGCAGCATTTTGGCTTAGGGAAGCTGA
1 ATATTTAATCTCTCAAAAAGCTTACACAAAGAAGCTCTTGCAGCATTTTGGCTTAGGGAAGCTGA
*
26444751 TTTGTCGGTTTTAAACCTAGCAGATTGAACTAGTTTTCACACTTGAAGAACATGAAATTAAGC-T
66 TTTGTCGGTTTTAAACCTAGAAGATTGAACTAGTTTTCACACTTGAAGAACATGAAATTAAGCAT
26444815 TTTACTTACATTTCTATAGGGTTTAACTTAGTTTTCGT
131 TTTACTTACATTTCTATAGGGTTTAACTTAGTTTTCGT
* * * * *
26444853 ATATTTAATCTGTCAAAAGGCTTACGCAAAGAAGCTCTTGTAGCATTTTGGCTTAGGGGAGCTGA
1 ATATTTAATCTCTCAAAAAGCTTACACAAAGAAGCTCTTGCAGCATTTTGGCTTAGGGAAGCTGA
* *
26444918 TTTTTCGGTTTTAAACCTAGAAGATTGAACTAGTTTTCACACTTGAAGAACTTGAAATTAAGCAT
66 TTTGTCGGTTTTAAACCTAGAAGATTGAACTAGTTTTCACACTTGAAGAACATGAAATTAAGCAT
* *
26444983 TTTCCTTACATTTCTATAGGGTTTAACTTAGTTTTTGT
131 TTTACTTACATTTCTATAGGGTTTAACTTAGTTTTCGT
26445021 ATATTTAAT
1 ATATTTAAT
26445030 AAATTGTGTA
Statistics
Matches: 165, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
167 119 0.72
168 46 0.28
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (168 bp):
ATATTTAATCTCTCAAAAAGCTTACACAAAGAAGCTCTTGCAGCATTTTGGCTTAGGGAAGCTGA
TTTGTCGGTTTTAAACCTAGAAGATTGAACTAGTTTTCACACTTGAAGAACATGAAATTAAGCAT
TTTACTTACATTTCTATAGGGTTTAACTTAGTTTTCGT
Found at i:26450506 original size:52 final size:52
Alignment explanation
Indices: 26450401--26450570 Score: 263
Period size: 52 Copynumber: 3.3 Consensus size: 52
26450391 AAAAGTCTGT
26450401 TGACTAAGTGTCATCGTGAGTACATG-A-ACTTCACGGATTATAAGGTCCGA
1 TGACTAAGTGTCATCGTGAGTACATGAATACTTCACGGATTATAAGGTCCGA
* *
26450451 TGACTAAGTGTCATCATGAGTACATGAATACTTCACAGATTATAAGGTCCGA
1 TGACTAAGTGTCATCGTGAGTACATGAATACTTCACGGATTATAAGGTCCGA
* * **
26450503 TGACTAAGTGTAATCGTGAGTACATGAATCCTTCACGGATTATAAGGTTTGA
1 TGACTAAGTGTCATCGTGAGTACATGAATACTTCACGGATTATAAGGTCCGA
*
26450555 TGGCTAAGTGTCATCG
1 TGACTAAGTGTCATCG
26450571 AAAGTATATA
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 25 0.23
51 1 0.01
52 82 0.76
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (52 bp):
TGACTAAGTGTCATCGTGAGTACATGAATACTTCACGGATTATAAGGTCCGA
Found at i:26452747 original size:38 final size:38
Alignment explanation
Indices: 26452705--26452783 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
26452695 CACAATCAAC
*
26452705 CTATTATATATGCTCCTAACCAATCACTTGTATTTCTA
1 CTATTATACATGCTCCTAACCAATCACTTGTATTTCTA
26452743 CTATTATACATGCTCCTAACCAATCACTTGTATTTCTA
1 CTATTATACATGCTCCTAACCAATCACTTGTATTTCTA
26452781 CTA
1 CTA
26452784 GCTCAAGCAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.41
Consensus pattern (38 bp):
CTATTATACATGCTCCTAACCAATCACTTGTATTTCTA
Done.