Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42971368
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 84 of 143
Found at i:26606252 original size:45 final size:45
Alignment explanation
Indices: 26606180--26606343 Score: 159
Period size: 45 Copynumber: 3.6 Consensus size: 45
26606170 GCAGACAAGC
* *
26606180 TGCTAGTACGCTGTGGATAAACTACTCATTGGTGCAAATAAAAAT
1 TGCTAGTACGATGTGGATAAACCACTCATTGGTGCAAATAAAAAT
* * * * *
26606225 TGTTAGTACGTTGTGGATAAACCACTCATTGGTGTAGATAAAAGT
1 TGCTAGTACGATGTGGATAAACCACTCATTGGTGCAAATAAAAAT
* * * * ** *
26606270 TGCTAGTATGGTATGGACAAACCACTCATCAGTGCATATAAAAGA-
1 TGCTAGTACGATGTGGATAAACCACTCATTGGTGCAAATAAAA-AT
* * *
26606315 TGCTAGTACAATGAGTATAAACCACTCAT
1 TGCTAGTACGATGTGGATAAACCACTCAT
26606344 CATTGTAGAT
Statistics
Matches: 95, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
45 95 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (45 bp):
TGCTAGTACGATGTGGATAAACCACTCATTGGTGCAAATAAAAAT
Found at i:26606453 original size:34 final size:34
Alignment explanation
Indices: 26606407--26606496 Score: 162
Period size: 34 Copynumber: 2.6 Consensus size: 34
26606397 ATTCAATATG
*
26606407 ACATGCTTATAATAGATTAATACAGTTGCAAGAA
1 ACATGCTCATAATAGATTAATACAGTTGCAAGAA
*
26606441 ACATGCTCATAATAGATTAATACAGTTGCAAGGA
1 ACATGCTCATAATAGATTAATACAGTTGCAAGAA
26606475 ACATGCTCATAATAGATTAATA
1 ACATGCTCATAATAGATTAATA
26606497 TGGTAGAATT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 54 1.00
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.29
Consensus pattern (34 bp):
ACATGCTCATAATAGATTAATACAGTTGCAAGAA
Found at i:26606515 original size:34 final size:34
Alignment explanation
Indices: 26606477--26606570 Score: 118
Period size: 34 Copynumber: 2.8 Consensus size: 34
26606467 TGCAAGGAAC
* * * *
26606477 ATGCTCATAATAGATTAATATGGTAG-AATTAGAT
1 ATGCTTATAACAGATCAATACGGTAGCAA-TAGAT
26606511 ATGCTTATAACAGATCAATACGGTAGCAATAGAT
1 ATGCTTATAACAGATCAATACGGTAGCAATAGAT
* *
26606545 ATGCTTATAACAAATCAATACAGTAG
1 ATGCTTATAACAGATCAATACGGTAG
26606571 TAAAAGGCAT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
34 51 0.96
35 2 0.04
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.30
Consensus pattern (34 bp):
ATGCTTATAACAGATCAATACGGTAGCAATAGAT
Found at i:26606583 original size:34 final size:34
Alignment explanation
Indices: 26606406--26606586 Score: 98
Period size: 34 Copynumber: 5.3 Consensus size: 34
26606396 AATTCAATAT
* * * *
26606406 GACATGCTTATAATAGATTAATACAGTTGCAAGAA
1 GACATGCTTATAACAAATCAATACAGTAGCAA-AA
* * * * * *
26606441 -ACATGCTCATAATAGATTAATACAGTTGC-AAG
1 GACATGCTTATAACAAATCAATACAGTAGCAAAA
* * * * ** *
26606473 GAACATGCTCATAATAGATTAATATGGTAG-AATTA
1 G-ACATGCTTATAACAAATCAATACAGTAGCAA-AA
* * * *
26606508 GATATGCTTATAACAGATCAATACGGTAGCAATA
1 GACATGCTTATAACAAATCAATACAGTAGCAAAA
* *
26606542 GATATGCTTATAACAAATCAATACAGTAGTAAAA
1 GACATGCTTATAACAAATCAATACAGTAGCAAAA
*
26606576 GGCATGCTTAT
1 GACATGCTTAT
26606587 CATGTTTCGA
Statistics
Matches: 123, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
32 1 0.01
33 1 0.01
34 118 0.96
35 3 0.02
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.29
Consensus pattern (34 bp):
GACATGCTTATAACAAATCAATACAGTAGCAAAA
Found at i:26608330 original size:19 final size:19
Alignment explanation
Indices: 26608290--26608351 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
26608280 TATTATAAAA
* *
26608290 TAATATTATTCAAAAT-TTT
1 TAATATAATT-AAAATATAT
26608309 TAATATAATTAAAATATAT
1 TAATATAATTAAAATATAT
* *
26608328 TAACTATGATAAAAAATATAT
1 TAA-TATAAT-TAAAATATAT
26608349 TAA
1 TAA
26608352 ACAATAACGT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 5 0.14
19 14 0.39
20 5 0.14
21 12 0.33
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (19 bp):
TAATATAATTAAAATATAT
Found at i:26615476 original size:20 final size:19
Alignment explanation
Indices: 26615439--26615495 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
26615429 AACTTTTTTC
* *
26615439 CTTTTATTTTCCCTTCAAAG
1 CTTTTACTTTCCC-TCAAAA
26615459 CTTTTACTTTCTCCTCAAAA
1 CTTTTACTTTC-CCTCAAAA
*
26615479 ATTTTAC-TTCCCTCAAA
1 CTTTTACTTTCCCTCAAA
26615496 CCCCCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 7 0.21
19 3 0.09
20 21 0.64
21 2 0.06
ACGTcount: A:0.25, C:0.28, G:0.02, T:0.46
Consensus pattern (19 bp):
CTTTTACTTTCCCTCAAAA
Found at i:26615501 original size:74 final size:75
Alignment explanation
Indices: 26615374--26615516 Score: 229
Period size: 74 Copynumber: 1.9 Consensus size: 75
26615364 TCCCCTAACC
26615374 CCCTTCAAACCCTTTTACTTTCCCCTAAAAATTTTACTTCCCCTCAAACCCCCAAAACT-TTTTT
1 CCCTTCAAACCCTTTTACTTTCCCCTAAAAATTTTACTTCCCCTCAAACCCCCAAAA-TATTTTT
26615438 CCTTTTATTTT
65 CCTTTTATTTT
* *
26615449 CCCTTCAAA-GCTTTTACTTTCTCCTCAAAAATTTTACTT-CCCTCAAACCCCCAAAATATTTTT
1 CCCTTCAAACCCTTTTACTTTCCCCT-AAAAATTTTACTTCCCCTCAAACCCCCAAAATATTTTT
26615512 CCTTT
65 CCTTT
26615517 AGCTTTCCCC
Statistics
Matches: 64, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
73 1 0.02
74 41 0.64
75 22 0.34
ACGTcount: A:0.25, C:0.34, G:0.01, T:0.41
Consensus pattern (75 bp):
CCCTTCAAACCCTTTTACTTTCCCCTAAAAATTTTACTTCCCCTCAAACCCCCAAAATATTTTTC
CTTTTATTTT
Found at i:26620836 original size:24 final size:24
Alignment explanation
Indices: 26620800--26620863 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
26620790 TACTAGTCTT
* *
26620800 CTAGA-AATTTAGCTCAGATGAGC
1 CTAGATAAGTTAGCTCAGACGAGC
* **
26620823 CTAGATAGGTTAGCTCTTACGAGC
1 CTAGATAAGTTAGCTCAGACGAGC
26620847 CTAGATAAGTTAGCTCA
1 CTAGATAAGTTAGCTCA
26620864 TTCAAGTCCA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
23 5 0.15
24 28 0.85
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (24 bp):
CTAGATAAGTTAGCTCAGACGAGC
Found at i:26629153 original size:23 final size:23
Alignment explanation
Indices: 26629072--26629205 Score: 128
Period size: 23 Copynumber: 5.8 Consensus size: 23
26629062 TTAATGTTCA
**
26629072 CGAACATGTTCATTTAAC-TTAAT
1 CGAACATGTTCA-CGAACATTAAT
*
26629095 CGAACATGTTCACGAATATTAAT
1 CGAACATGTTCACGAACATTAAT
26629118 CGAACATGTTCACGAACATTAAT
1 CGAACATGTTCACGAACATTAAT
* * * *
26629141 CGAATATGTTCACGGACAATAAA
1 CGAACATGTTCACGAACATTAAT
* *
26629164 CGAATA-GTTCATGAACATATAAAT
1 CGAACATGTTCACGAACAT-T-AAT
* *
26629188 TGAACACGTTCACGAACA
1 CGAACATGTTCACGAACA
26629206 ATATTAATGA
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
22 11 0.12
23 65 0.71
24 6 0.07
25 10 0.11
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (23 bp):
CGAACATGTTCACGAACATTAAT
Found at i:26629336 original size:24 final size:24
Alignment explanation
Indices: 26629293--26629361 Score: 122
Period size: 24 Copynumber: 2.9 Consensus size: 24
26629283 ATCATTAATA
*
26629293 AATAAACGAGC-TATAAACGAGTT
1 AATAAGCGAGCTTATAAACGAGTT
26629316 AATAAGCGAGCTTATAAACGAGTT
1 AATAAGCGAGCTTATAAACGAGTT
26629340 AATAAGCGAGCTTATAAACGAG
1 AATAAGCGAGCTTATAAACGAG
26629362 CTTGTTCGTG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 10 0.23
24 34 0.77
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.22
Consensus pattern (24 bp):
AATAAGCGAGCTTATAAACGAGTT
Found at i:26629362 original size:12 final size:12
Alignment explanation
Indices: 26629294--26629364 Score: 85
Period size: 12 Copynumber: 6.0 Consensus size: 12
26629284 TCATTAATAA
26629294 ATAAACGAGC-T
1 ATAAACGAGCTT
26629305 ATAAACGAG-TT
1 ATAAACGAGCTT
*
26629316 AATAAGCGAGCTT
1 -ATAAACGAGCTT
26629329 ATAAACGAG-TT
1 ATAAACGAGCTT
*
26629340 AATAAGCGAGCTT
1 -ATAAACGAGCTT
26629353 ATAAACGAGCTT
1 ATAAACGAGCTT
26629365 GTTCGTGAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
11 12 0.24
12 35 0.69
13 4 0.08
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.24
Consensus pattern (12 bp):
ATAAACGAGCTT
Found at i:26630515 original size:26 final size:28
Alignment explanation
Indices: 26630454--26630513 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
26630444 TTTTTTATCC
26630454 AAAAAATATAAAAATGATAATTAATTAT
1 AAAAAATATAAAAATGATAATTAATTAT
26630482 AAAAAATATGAAAAAT-A-AATTAATTAT
1 AAAAAATAT-AAAAATGATAATTAATTAT
*
26630509 GAAAA
1 AAAAA
26630514 TAGACATTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 14 0.47
28 10 0.33
29 6 0.20
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (28 bp):
AAAAAATATAAAAATGATAATTAATTAT
Found at i:26637862 original size:24 final size:24
Alignment explanation
Indices: 26637834--26637879 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
26637824 AAGAAATTTA
*
26637834 ATATCATCTTTTAATGTAACACTG
1 ATATCATCTTTTAATCTAACACTG
26637858 ATATCATCTTTTAATCTAACAC
1 ATATCATCTTTTAATCTAACAC
26637880 CTTTTATTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (24 bp):
ATATCATCTTTTAATCTAACACTG
Found at i:26641443 original size:15 final size:15
Alignment explanation
Indices: 26641424--26641457 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
26641414 AGAGGAAAGC
*
26641424 CAAAAAAATTAAAAA
1 CAAAAAAAATAAAAA
26641439 -AAAAAAAATAAAAA
1 CAAAAAAAATAAAAA
26641453 CAAAA
1 CAAAA
26641458 TAATATCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.85, C:0.06, G:0.00, T:0.09
Consensus pattern (15 bp):
CAAAAAAAATAAAAA
Found at i:26643072 original size:20 final size:19
Alignment explanation
Indices: 26643039--26643112 Score: 71
Period size: 19 Copynumber: 3.7 Consensus size: 19
26643029 TAAAAATTAC
*
26643039 AAAATAATTTAAAATACTTTT
1 AAAA-AATTCAAAATA-TTTT
26643060 AAAAAATTCAAAATAATTTT
1 AAAAAATTCAAAAT-ATTTT
*
26643080 -TAAAATTCAAAATA-TTT
1 AAAAAATTCAAAATATTTT
26643097 ATAAAAATTCTAAAAT
1 A-AAAAATTC-AAAAT
26643113 TTATTTTTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 19 0.41
20 18 0.39
21 5 0.11
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAAATTCAAAATATTTT
Found at i:26643086 original size:19 final size:19
Alignment explanation
Indices: 26643057--26643116 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
26643047 TTAAAATACT
26643057 TTTA-AAAAATTCAAAATAA
1 TTTATAAAAATTCAAAAT-A
*
26643076 TTT-TTAAAATTCAAAATA
1 TTTATAAAAATTCAAAATA
*
26643094 TTTATAAAAATTCTAAA-A
1 TTTATAAAAATTCAAAATA
26643112 TTTAT
1 TTTAT
26643117 TTTTTAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 10 0.28
19 26 0.72
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
TTTATAAAAATTCAAAATA
Found at i:26655856 original size:18 final size:19
Alignment explanation
Indices: 26655819--26655856 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
26655809 CCTAATCTAT
26655819 TTTTCTATTTCATTTTTCC
1 TTTTCTATTTCATTTTTCC
26655838 TTTTCT-TTT-ATTCTTTCC
1 TTTTCTATTTCATT-TTTCC
26655856 T
1 T
26655857 GAATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.17
18 9 0.50
19 6 0.33
ACGTcount: A:0.08, C:0.21, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTCTATTTCATTTTTCC
Found at i:26655936 original size:27 final size:27
Alignment explanation
Indices: 26655895--26655948 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
26655885 TCTTCATCCC
* * * *
26655895 TTTCCTAACCTTAGTCGTCGCTAACAT
1 TTTCCCAACCCTAGTCGCCGCCAACAT
26655922 TTTCCCAACCCTAGTCGCCGCCAACAT
1 TTTCCCAACCCTAGTCGCCGCCAACAT
26655949 GCACCATAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.22, C:0.37, G:0.11, T:0.30
Consensus pattern (27 bp):
TTTCCCAACCCTAGTCGCCGCCAACAT
Found at i:26656714 original size:16 final size:17
Alignment explanation
Indices: 26656695--26656729 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26656685 AAGAGGAAGG
*
26656695 AAGG-AAAAACGAAAAA
1 AAGGAAAAAAAGAAAAA
26656711 AAGGAAAAAAAGAAAAA
1 AAGGAAAAAAAGAAAAA
26656728 AA
1 AA
26656730 TAGAAAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (17 bp):
AAGGAAAAAAAGAAAAA
Found at i:26657322 original size:59 final size:58
Alignment explanation
Indices: 26657238--26657400 Score: 184
Period size: 60 Copynumber: 2.7 Consensus size: 58
26657228 TATTTGATAT
* *
26657238 CTGAACTTGACACTTTTTCTTAATTTAGTACCTAAATTTTTTTTGA-CCCAATTTGGAAC
1 CTGAACTTGACACTTTTTC-TAATTTGGTACATAAATTTTTTTTGATCCC-ATTTGGAAC
* * * *
26657297 CTGAACTTGCCACTTTTTCTAAATTTGGTACTTAAACTTTTTTTGGATCCCATTTGGTAC
1 CTGAACTTGACACTTTTTCT-AATTTGGTACATAAA-TTTTTTTTGATCCCATTTGGAAC
* * * *
26657357 TTGAACTTAACATTTTTTTCTAATTTGGTACATAAGTTTTTTTT
1 CTGAACTTGACA-CTTTTTCTAATTTGGTACATAAATTTTTTTT
26657401 TTTTTAGATT
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
58 1 0.01
59 38 0.43
60 39 0.44
61 10 0.11
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.48
Consensus pattern (58 bp):
CTGAACTTGACACTTTTTCTAATTTGGTACATAAATTTTTTTTGATCCCATTTGGAAC
Found at i:26657665 original size:31 final size:31
Alignment explanation
Indices: 26657628--26657764 Score: 95
Period size: 31 Copynumber: 4.5 Consensus size: 31
26657618 GAATCCCCAA
*
26657628 AAGTTTAAGTACCAACCTAAAAAAAAGTGTC
1 AAGTTTAAGTACCAAACTAAAAAAAAGTGTC
* * * * *
26657659 AGGTTTAGGTGCCAAATTAAGAAAAAGTGTC
1 AAGTTTAAGTACCAAACTAAAAAAAAGTGTC
* *
26657690 AAGTTTGAGTACCAAATTAAATCAAAAA---T-
1 AAGTTTAAGTACCAAACTAAA--AAAAAGTGTC
* * * *
26657719 AAATTTAGGTA-CAAATTAAAAAAAAGTGTT
1 AAGTTTAAGTACCAAACTAAAAAAAAGTGTC
* *
26657749 AAGTTCAAGTGCCAAA
1 AAGTTTAAGTACCAAA
26657765 TATTGTATTA
Statistics
Matches: 81, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
26 5 0.06
28 9 0.11
29 9 0.11
30 8 0.10
31 45 0.56
33 5 0.06
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (31 bp):
AAGTTTAAGTACCAAACTAAAAAAAAGTGTC
Found at i:26663478 original size:19 final size:19
Alignment explanation
Indices: 26663454--26663490 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26663444 ATAAGTATAC
26663454 TTTACGTAATATTTGTAGT
1 TTTACGTAATATTTGTAGT
*
26663473 TTTACGTAGTATTTGTAG
1 TTTACGTAATATTTGTAG
26663491 ATGGATTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.05, G:0.19, T:0.51
Consensus pattern (19 bp):
TTTACGTAATATTTGTAGT
Found at i:26668813 original size:21 final size:21
Alignment explanation
Indices: 26668789--26668842 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
26668779 CTTGGAAAAG
*
26668789 TTCTACCGATACAAGT-GTAAC
1 TTCTACCGATACAAGTCAT-AC
* * *
26668810 TTCTATCGAAACAAGTCATGC
1 TTCTACCGATACAAGTCATAC
26668831 TTCTACCGATAC
1 TTCTACCGATAC
26668843 TAAAAACTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (21 bp):
TTCTACCGATACAAGTCATAC
Found at i:26669626 original size:52 final size:52
Alignment explanation
Indices: 26669557--26669951 Score: 583
Period size: 52 Copynumber: 7.6 Consensus size: 52
26669547 ATTTCATTTA
*
26669557 ATACTCACGATAACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * * * *
26669609 ATACTTACAATGACACATAGTTATTGGACCTCATAATCTGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
*
26669661 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTTAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
26669713 ATACTCACGATGACACATAGTCATCAGACCTCATAATCCATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * * * *
26669765 ATACTAATGATGACACATAGTCATCAGACCTTATAATCCGTAAAGGATTTAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * *
26669817 ATACTCATGATGACACATAGTTATCGGACCTCATAATCTGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * * **
26669869 ATACTAATGATGACACATAGTCATTGGACCTCATAATCTATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
*
26669921 ATGCTCACGATGACACATAGTCATCGGACCT
1 ATACTCACGATGACACATAGTCATCGGACCT
26669952 TTTTCATTTA
Statistics
Matches: 309, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 309 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.28
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:26670284 original size:14 final size:14
Alignment explanation
Indices: 26670265--26670294 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
26670255 TTACAAAATT
26670265 ACCCTTAACTTTTC
1 ACCCTTAACTTTTC
26670279 ACCCTTAACTTTTC
1 ACCCTTAACTTTTC
26670293 AC
1 AC
26670295 TTTTATTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.37, G:0.00, T:0.40
Consensus pattern (14 bp):
ACCCTTAACTTTTC
Found at i:26670452 original size:16 final size:16
Alignment explanation
Indices: 26670428--26670459 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26670418 TCCTTACAAA
*
26670428 TTTATTCCTTTAACAT
1 TTTAGTCCTTTAACAT
26670444 TTTAGTCCTTTAACAT
1 TTTAGTCCTTTAACAT
26670460 AAAAATTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.19, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTAGTCCTTTAACAT
Found at i:26675635 original size:30 final size:30
Alignment explanation
Indices: 26675599--26675880 Score: 279
Period size: 30 Copynumber: 9.4 Consensus size: 30
26675589 GAGAATTTAG
* *
26675599 GGTTAAAATGTGATTTTGGGAAGGTTTGGA
1 GGTTAAAATGTGATTTTGGAAAAGTTTGGA
* *
26675629 GGTTAAAATGTGATTTTGGGAAGGTTTGGA
1 GGTTAAAATGTGATTTTGGAAAAGTTTGGA
*
26675659 GGTTAAAATGTGATTTTGGAAAAGTTT-TA
1 GGTTAAAATGTGATTTTGGAAAAGTTTGGA
*
26675688 GAGTTAAAATGTGATTTTGGAAAAGTTT-AA
1 G-GTTAAAATGTGATTTTGGAAAAGTTTGGA
**
26675718 GGGTTAAAATGAAATTTTGGAAAAGTTTAGG-
1 -GGTTAAAATGTGATTTTGGAAAAGTTT-GGA
* * *
26675749 GGTTAAAATGTAATTATAGAAAAGTTT-GA
1 GGTTAAAATGTGATTTTGGAAAAGTTTGGA
* *
26675778 GGGCTAAAATGTAATTTTGGAAAAGTTTAGG-
1 -GGTTAAAATGTGATTTTGGAAAAGTTT-GGA
* *
26675809 GGTTAAAATGTAATTTTTAGAAAAGTTTGG-
1 GGTTAAAATGTGA-TTTTGGAAAAGTTTGGA
* * * *
26675839 GGTTAAAAATATGATTTTAGAAAATTTTAGA
1 GGTT-AAAATGTGATTTTGGAAAAGTTTGGA
*
26675870 GGTCAAAATGT
1 GGTTAAAATGT
26675881 AGTTTTCAAA
Statistics
Matches: 220, Mismatches: 21, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
28 1 0.00
29 2 0.01
30 192 0.87
31 24 0.11
32 1 0.00
ACGTcount: A:0.37, C:0.01, G:0.27, T:0.36
Consensus pattern (30 bp):
GGTTAAAATGTGATTTTGGAAAAGTTTGGA
Found at i:26675670 original size:60 final size:60
Alignment explanation
Indices: 26675597--26675886 Score: 318
Period size: 60 Copynumber: 4.8 Consensus size: 60
26675587 TGGAGAATTT
* * * * * *
26675597 AGGGTTAAAATGTGATTTTGGGAAGGTTT-GGAGGTTAAAATGTGATTTTGGGAAGGTTTG
1 AGGGTTAAAATGTGATTTTGGAAAAGTTTAGG-GGTTAAAATGTAATTTTAGAAAAGTTTG
* * * *
26675657 -GAGGTTAAAATGTGATTTTGGAAAAGTTTTA-GAGTTAAAATGTGATTTTGGAAAAGTTTA
1 AG-GGTTAAAATGTGATTTTGGAAAAG-TTTAGGGGTTAAAATGTAATTTTAGAAAAGTTTG
** *
26675717 AGGGTTAAAATGAAATTTTGGAAAAGTTTAGGGGTTAAAATGTAATTATAGAAAAGTTTG
1 AGGGTTAAAATGTGATTTTGGAAAAGTTTAGGGGTTAAAATGTAATTTTAGAAAAGTTTG
* *
26675777 AGGGCTAAAATGTAATTTTGGAAAAGTTTAGGGGTTAAAATGTAATTTTTAGAAAAGTTTG
1 AGGGTTAAAATGTGATTTTGGAAAAGTTTAGGGGTTAAAATGTAA-TTTTAGAAAAGTTTG
* * * * * *
26675838 -GGGTTAAAAATATGATTTTAGAAAATTTTAGAGGTCAAAATGTAGTTTT
1 AGGGTT-AAAATGTGATTTTGGAAAAGTTTAGGGGTTAAAATGTAATTTT
26675887 CAAAGAAAAT
Statistics
Matches: 199, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
59 5 0.03
60 143 0.72
61 51 0.26
ACGTcount: A:0.36, C:0.01, G:0.27, T:0.37
Consensus pattern (60 bp):
AGGGTTAAAATGTGATTTTGGAAAAGTTTAGGGGTTAAAATGTAATTTTAGAAAAGTTTG
Found at i:26675702 original size:90 final size:89
Alignment explanation
Indices: 26675594--26675880 Score: 328
Period size: 90 Copynumber: 3.2 Consensus size: 89
26675584 TTTTGGAGAA
* * * * * *
26675594 TTTAGGGTTAAAATGTGATTTTGGGAAGGTTTGGAGGTTAAAATGTGATTTTGGGAAGGTTTGGA
1 TTTAGAGTTAAAATGTGATTTTGGAAAAGTTTGGAGGTTAAAATGTAATTTTGGAAAAGTTTGG-
*
26675659 GGTTAAAATGTGATTTTGGAAAAGT
65 GGTTAAAATGTGATTTTAGAAAAGT
* *
26675684 TTTAGAGTTAAAATGTGATTTTGGAAAAGTTT-AAGGGTTAAAATGAAATTTTGGAAAAGTTTAG
1 TTTAGAGTTAAAATGTGATTTTGGAAAAGTTTGGA-GGTTAAAATGTAATTTTGGAAAAGTTT-G
* *
26675748 GGGTTAAAATGTAATTATAGAAAAGT
64 GGGTTAAAATGTGATTTTAGAAAAGT
* * * * *
26675774 TTGAGGGCTAAAATGTAATTTTGGAAAAGTTTAGG-GGTTAAAATGTAATTTTTAGAAAAGTTTG
1 TTTAGAGTTAAAATGTGATTTTGGAAAAGTTT-GGAGGTTAAAATGTAA-TTTTGGAAAAGTTTG
*
26675838 GGGTTAAAAATATGATTTTAGAAAA-T
64 GGGTT-AAAATGTGATTTTAGAAAAGT
*
26675864 TTTAGAGGTCAAAATGT
1 TTTAGA-GTTAAAATGT
26675881 AGTTTTCAAA
Statistics
Matches: 165, Mismatches: 25, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
89 1 0.01
90 125 0.76
91 39 0.24
ACGTcount: A:0.36, C:0.01, G:0.26, T:0.37
Consensus pattern (89 bp):
TTTAGAGTTAAAATGTGATTTTGGAAAAGTTTGGAGGTTAAAATGTAATTTTGGAAAAGTTTGGG
GTTAAAATGTGATTTTAGAAAAGT
Found at i:26676725 original size:10 final size:10
Alignment explanation
Indices: 26676710--26676758 Score: 57
Period size: 10 Copynumber: 5.1 Consensus size: 10
26676700 TAAAATCAAA
*
26676710 ATGTATATCT
1 ATGTATATAT
26676720 ATGTATATAT
1 ATGTATATAT
26676730 ATGTATATA-
1 ATGTATATAT
*
26676739 CT-TATATAT
1 ATGTATATAT
*
26676748 ATATATATAT
1 ATGTATATAT
26676758 A
1 A
26676759 AAATAAAACA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
8 6 0.18
9 2 0.06
10 26 0.76
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (10 bp):
ATGTATATAT
Found at i:26680870 original size:38 final size:38
Alignment explanation
Indices: 26680797--26680870 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
26680787 CCCAAGACTG
* *
26680797 TCGCTGCATAAATATTCTTTAAATTGCATCCAGAATTA
1 TCGCTGCATAAATATTCTTTAAACTGCACCCAGAATTA
* *
26680835 TCGCTGCATAAGTATTC-TTCAACTGCACCCAAGAAT
1 TCGCTGCATAAATATTCTTTAAACTGCACCC-AGAAT
26680871 GTCGCTACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 10 0.32
38 21 0.68
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.32
Consensus pattern (38 bp):
TCGCTGCATAAATATTCTTTAAACTGCACCCAGAATTA
Found at i:26681740 original size:16 final size:16
Alignment explanation
Indices: 26681719--26681749 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26681709 TTGTGGATCC
26681719 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
26681735 CATTTTATCTTTATT
1 CATTTTACCTTTATT
26681750 TTAACATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:26684051 original size:17 final size:17
Alignment explanation
Indices: 26684029--26684086 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
26684019 TAATTGTCCC
*
26684029 TGCATTTTTATTATCAT
1 TGCATTTTTATTGTCAT
*
26684046 TGCATTTTTATTGTCAC
1 TGCATTTTTATTGTCAT
* **
26684063 TGCATCTACATTGTCAT
1 TGCATTTTTATTGTCAT
26684080 TGCATTT
1 TGCATTT
26684087 CCATATATTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.21, C:0.17, G:0.10, T:0.52
Consensus pattern (17 bp):
TGCATTTTTATTGTCAT
Found at i:26684737 original size:20 final size:20
Alignment explanation
Indices: 26684709--26684747 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26684699 TATATTAGTG
26684709 TACAATAAATGCTGTATTGA
1 TACAATAAATGCTGTATTGA
*
26684729 TACATTAAATGCTGTATTG
1 TACAATAAATGCTGTATTG
26684748 GTGGATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38
Consensus pattern (20 bp):
TACAATAAATGCTGTATTGA
Found at i:26685310 original size:37 final size:37
Alignment explanation
Indices: 26685269--26685359 Score: 137
Period size: 37 Copynumber: 2.5 Consensus size: 37
26685259 AAATTTGTGT
* *
26685269 CCAAAATTGTCACCGCATGAGCACTTCCAGATTGCAC
1 CCAAAACTGTCACCGCATGAGCACTACCAGATTGCAC
* * *
26685306 CCAAAACTGTCGCTGCATGTGCACTACCAGATTGCAC
1 CCAAAACTGTCACCGCATGAGCACTACCAGATTGCAC
26685343 CCAAAACTGTCACCGCA
1 CCAAAACTGTCACCGCA
26685360 GGAATATTTC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.30, C:0.34, G:0.16, T:0.20
Consensus pattern (37 bp):
CCAAAACTGTCACCGCATGAGCACTACCAGATTGCAC
Found at i:26685470 original size:37 final size:38
Alignment explanation
Indices: 26685375--26685472 Score: 119
Period size: 38 Copynumber: 2.6 Consensus size: 38
26685365 ATTTCCGGAA
* *
26685375 TGCACCCAAGACTGTCGTTGCATAAATATTCTTCAAAT
1 TGCACCCAAGAATGTCGCTGCATAAATATTCTTCAAAT
* * * *
26685413 TGCATCC-AGAACTATTGCTGCATAAGTATTCTTC-AAT
1 TGCACCCAAGAA-TGTCGCTGCATAAATATTCTTCAAAT
26685450 TGCACCCAAGAATGTCGCTGCAT
1 TGCACCCAAGAATGTCGCTGCAT
26685473 GAACATGAAC
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
37 21 0.43
38 28 0.57
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (38 bp):
TGCACCCAAGAATGTCGCTGCATAAATATTCTTCAAAT
Found at i:26690208 original size:19 final size:20
Alignment explanation
Indices: 26690160--26690209 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
26690150 AGGCAGTATA
*
26690160 TAAAAATATA-AATATAATT
1 TAAAAATAAATAATATAATT
* *
26690179 T-AAATTTAATAATA-AATT
1 TAAAAATAAATAATATAATT
26690197 TAAAAATAAATAA
1 TAAAAATAAATAA
26690210 CAAGTATAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
TAAAAATAAATAATATAATT
Found at i:26704604 original size:21 final size:21
Alignment explanation
Indices: 26704578--26704619 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
26704568 CGGTAAGCAA
26704578 GGTAGTTTTAACCTAGGACTT
1 GGTAGTTTTAACCTAGGACTT
* *
26704599 GGTAGTTTTAGCCTGGGACTT
1 GGTAGTTTTAACCTAGGACTT
26704620 CTATTAATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.14, G:0.29, T:0.38
Consensus pattern (21 bp):
GGTAGTTTTAACCTAGGACTT
Found at i:26705707 original size:24 final size:24
Alignment explanation
Indices: 26705680--26705771 Score: 103
Period size: 24 Copynumber: 3.8 Consensus size: 24
26705670 CGCTCACCAG
**
26705680 CTAATGTACGTTTACACTCGTCAA
1 CTAATGTACGTTTATGCTCGTCAA
*
26705704 CTAATGTACGTTTATGCTCGTCAG
1 CTAATGTACGTTTATGCTCGTCAA
* * *
26705728 CCACTGTACGTTTATGCTCGTCAG
1 CTAATGTACGTTTATGCTCGTCAA
* * *
26705752 CCACTATACGTTTATGCTCG
1 CTAATGTACGTTTATGCTCG
26705772 CCAGCCACTA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (24 bp):
CTAATGTACGTTTATGCTCGTCAA
Found at i:26705739 original size:48 final size:48
Alignment explanation
Indices: 26705664--26705780 Score: 135
Period size: 48 Copynumber: 2.4 Consensus size: 48
26705654 AAGTTTAGTG
* * * * * *
26705664 CGTTTACGCTCACCAGCTAATGTACGTTTACACTCGTCAACTAATGTA
1 CGTTTATGCTCGCCAGCCACTGTACGTTTACACTCGTCAACCAATATA
* ** * *
26705712 CGTTTATGCTCGTCAGCCACTGTACGTTTATGCTCGTCAGCCACTATA
1 CGTTTATGCTCGCCAGCCACTGTACGTTTACACTCGTCAACCAATATA
26705760 CGTTTATGCTCGCCAGCCACT
1 CGTTTATGCTCGCCAGCCACT
26705781 ATAGATAAAA
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.21, C:0.30, G:0.17, T:0.32
Consensus pattern (48 bp):
CGTTTATGCTCGCCAGCCACTGTACGTTTACACTCGTCAACCAATATA
Found at i:26705776 original size:24 final size:24
Alignment explanation
Indices: 26705710--26705783 Score: 130
Period size: 24 Copynumber: 3.1 Consensus size: 24
26705700 TCAACTAATG
*
26705710 TACGTTTATGCTCGTCAGCCACTG
1 TACGTTTATGCTCGTCAGCCACTA
26705734 TACGTTTATGCTCGTCAGCCACTA
1 TACGTTTATGCTCGTCAGCCACTA
*
26705758 TACGTTTATGCTCGCCAGCCACTA
1 TACGTTTATGCTCGTCAGCCACTA
26705782 TA
1 TA
26705784 GATAAAAACA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.20, C:0.30, G:0.18, T:0.32
Consensus pattern (24 bp):
TACGTTTATGCTCGTCAGCCACTA
Found at i:26706991 original size:28 final size:28
Alignment explanation
Indices: 26706915--26707134 Score: 244
Period size: 28 Copynumber: 7.9 Consensus size: 28
26706905 AATTTTTTGA
*
26706915 AAAATAATGGCAAAACTGTCAAATCTGG
1 AAAATAATGGCAAAACTGTAAAATCTGG
* * *
26706943 AAAATCAATGGCAAGACTATAAAATTTGG
1 AAAAT-AATGGCAAAACTGTAAAATCTGG
* * * * **
26706972 AAAATAGTGGCAAAATTATAAAATTTAA
1 AAAATAATGGCAAAACTGTAAAATCTGG
* * *
26707000 AAAACAATAG-AAAACTGTAAAATCTAG
1 AAAATAATGGCAAAACTGTAAAATCTGG
* *
26707027 AAAACAATGACAAAACTGTAAAATCTGG
1 AAAATAATGGCAAAACTGTAAAATCTGG
* * *
26707055 AAAACAATGGCAAAATTGTAAAATTTGG
1 AAAATAATGGCAAAACTGTAAAATCTGG
*
26707083 AAAATAGTGGCAAAACTGTAAAATCTGG
1 AAAATAATGGCAAAACTGTAAAATCTGG
*
26707111 AAAATAGTGGCAAAACTGTAAAAT
1 AAAATAATGGCAAAACTGTAAAAT
26707135 AGTGGCAGTT
Statistics
Matches: 164, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
27 21 0.13
28 119 0.73
29 24 0.15
ACGTcount: A:0.52, C:0.10, G:0.16, T:0.22
Consensus pattern (28 bp):
AAAATAATGGCAAAACTGTAAAATCTGG
Found at i:26712711 original size:17 final size:17
Alignment explanation
Indices: 26712689--26712721 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26712679 TAATTAAGGT
26712689 TTAAATA-AAGTTTTAAC
1 TTAAATAGAA-TTTTAAC
26712706 TTAAATAGAATTTTAA
1 TTAAATAGAATTTTAA
26712722 ATATAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (17 bp):
TTAAATAGAATTTTAAC
Found at i:26713040 original size:8 final size:8
Alignment explanation
Indices: 26713029--26713099 Score: 56
Period size: 8 Copynumber: 8.6 Consensus size: 8
26713019 GTTTTGAGTA
26713029 TTTTATAT
1 TTTTATAT
26713037 TTTTATAAAT
1 TTTTAT--AT
*
26713047 TTTAATCAT
1 TTTTAT-AT
26713056 TTTTGA-AT
1 TTTT-ATAT
*
26713064 TTTTATGT
1 TTTTATAT
*
26713072 TTTTAAAT
1 TTTTATAT
26713080 TTTTA-AT
1 TTTTATAT
*
26713087 TTATATAT
1 TTTTATAT
26713095 TTTTA
1 TTTTA
26713100 AAATTTTTAG
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
7 7 0.14
8 30 0.60
9 5 0.10
10 8 0.16
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (8 bp):
TTTTATAT
Found at i:26713087 original size:23 final size:24
Alignment explanation
Indices: 26713054--26713108 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
26713044 AATTTTAATC
* *
26713054 ATTTTTGAATTTTTATGTTTTT-AA
1 ATTTTT-AATTTATATATTTTTAAA
26713078 ATTTTTAATTTATATATTTTTAAA
1 ATTTTTAATTTATATATTTTTAAA
26713102 ATTTTTA
1 ATTTTTA
26713109 GAATCATGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 13 0.46
24 15 0.54
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (24 bp):
ATTTTTAATTTATATATTTTTAAA
Found at i:26713318 original size:31 final size:31
Alignment explanation
Indices: 26713274--26713349 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
26713264 TTTTAATGGT
* *
26713274 AGAGTAACTAAAATTGACGACTTATCTATCA
1 AGAGTGACTAAAATTGACGACTTATCTAACA
*
26713305 GGAGTGACTAAAATTGACGACTTATCTAACA
1 AGAGTGACTAAAATTGACGACTTATCTAACA
*
26713336 AGAATGACTAAAAT
1 AGAGTGACTAAAAT
26713350 AACAAATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.26
Consensus pattern (31 bp):
AGAGTGACTAAAATTGACGACTTATCTAACA
Found at i:26713527 original size:3 final size:3
Alignment explanation
Indices: 26713511--26713557 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
26713501 CTTTTATACT
*
26713511 TTC TTC TT- TAC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
26713558 CACTTATTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 1 0.02
3 40 0.98
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:26713567 original size:3 final size:3
Alignment explanation
Indices: 26713561--26713613 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
26713551 CTTCTTCCAC
26713561 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26713609 TTA TT
1 TTA TT
26713614 TTACTTGGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26716143 original size:17 final size:16
Alignment explanation
Indices: 26716121--26716154 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
26716111 TCTTTTCTCA
26716121 TTTCCTCTTCTTCTTTT
1 TTTCCTCTTCTT-TTTT
*
26716138 TTTCCTTTTCTTTTTT
1 TTTCCTCTTCTTTTTT
26716154 T
1 T
26716155 ATAGACTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTCCTCTTCTTTTTT
Found at i:26716761 original size:18 final size:18
Alignment explanation
Indices: 26716738--26716775 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
26716728 ACTAACATAT
26716738 AAAATGCAATGACAAATA
1 AAAATGCAATGACAAATA
*
26716756 AAAATGCAATGACAACTA
1 AAAATGCAATGACAAATA
26716774 AA
1 AA
26716776 TGCTATGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.61, C:0.13, G:0.11, T:0.16
Consensus pattern (18 bp):
AAAATGCAATGACAAATA
Found at i:26716858 original size:3 final size:3
Alignment explanation
Indices: 26716850--26716875 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26716840 TGCTTTGGCT
26716850 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
26716876 TGGACGCTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:26721687 original size:12 final size:12
Alignment explanation
Indices: 26721670--26721699 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
26721660 GAAGGGTTTG
26721670 CGAAGTGGAAGT
1 CGAAGTGGAAGT
26721682 CGAAGTGGAAGT
1 CGAAGTGGAAGT
26721694 CGAAGT
1 CGAAGT
26721700 TTGTAAGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.10, G:0.40, T:0.17
Consensus pattern (12 bp):
CGAAGTGGAAGT
Found at i:26735471 original size:13 final size:12
Alignment explanation
Indices: 26735449--26735478 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
26735439 GTTGAATGAG
26735449 AAAAAGAAAAGA
1 AAAAAGAAAAGA
26735461 AAAAGAGAAAAGA
1 AAAA-AGAAAAGA
26735474 AAAAA
1 AAAAA
26735479 AAATATTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAGA
Found at i:26747684 original size:34 final size:34
Alignment explanation
Indices: 26747641--26747712 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
26747631 AAGCAATGGC
26747641 TCTTTTGTGCTTCTTCACAATTACGATTAGCTTT
1 TCTTTTGTGCTTCTTCACAATTACGATTAGCTTT
26747675 TCTTTTGTGCTTCTTCACAATTACGATTAGCTTT
1 TCTTTTGTGCTTCTTCACAATTACGATTAGCTTT
26747709 TCTT
1 TCTT
26747713 CTTGCCTTGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.17, C:0.21, G:0.11, T:0.51
Consensus pattern (34 bp):
TCTTTTGTGCTTCTTCACAATTACGATTAGCTTT
Found at i:26753864 original size:35 final size:36
Alignment explanation
Indices: 26753825--26753914 Score: 121
Period size: 35 Copynumber: 2.6 Consensus size: 36
26753815 AACAAGCATG
26753825 ACCTTTGGGTCAACAGGGAGAAAATGAGCATAAT-A
1 ACCTTTGGGTCAACAGGGAGAAAATGAGCATAATGA
* **
26753860 ACCTTTGTGTCAATGGGGAGAAAATGAGCATAATGA
1 ACCTTTGGGTCAACAGGGAGAAAATGAGCATAATGA
* *
26753896 A-TTTTGGGTCAACATGGAG
1 ACCTTTGGGTCAACAGGGAG
26753915 TAAACGAATA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
35 44 0.96
36 2 0.04
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.24
Consensus pattern (36 bp):
ACCTTTGGGTCAACAGGGAGAAAATGAGCATAATGA
Found at i:26754585 original size:21 final size:21
Alignment explanation
Indices: 26754559--26754625 Score: 107
Period size: 21 Copynumber: 3.2 Consensus size: 21
26754549 GAGTTTTTAA
*
26754559 TATCGGTAGTAGTATGACTTG
1 TATCGGTAGTTGTATGACTTG
26754580 TATCGGTAGTTGTATGACTTG
1 TATCGGTAGTTGTATGACTTG
* *
26754601 TATCGGTAGTTGTCTCACTTG
1 TATCGGTAGTTGTATGACTTG
26754622 TATC
1 TATC
26754626 AGTAAAACTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.19, C:0.13, G:0.25, T:0.42
Consensus pattern (21 bp):
TATCGGTAGTTGTATGACTTG
Found at i:26757261 original size:26 final size:26
Alignment explanation
Indices: 26757232--26757284 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26757222 TTCGTCAATA
26757232 TGTCTACTATCACTCAGATCAAATCT
1 TGTCTACTATCACTCAGATCAAATCT
*
26757258 TGTCTACTATCACTCAGATCGAATCT
1 TGTCTACTATCACTCAGATCAAATCT
26757284 T
1 T
26757285 TCTTCTTCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.36
Consensus pattern (26 bp):
TGTCTACTATCACTCAGATCAAATCT
Found at i:26761301 original size:19 final size:18
Alignment explanation
Indices: 26761277--26761330 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
26761267 TAATGTTTAC
*
26761277 TATATTATTATTTTAATAT
1 TATATTATTA-TTTAATAA
26761296 TATATTA-TATTTAATAA
1 TATATTATTATTTAATAA
*
26761313 TACTTTTATTATTTAATA
1 TA-TATTATTATTTAATA
26761331 CATTAGCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 9 0.29
18 6 0.19
19 16 0.52
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
TATATTATTATTTAATAA
Found at i:26761504 original size:36 final size:33
Alignment explanation
Indices: 26761463--26761529 Score: 89
Period size: 33 Copynumber: 1.9 Consensus size: 33
26761453 TTATTTATTA
26761463 TATTATTAAATTAGTATTAAAATAATATTTTATTTT
1 TATTATTAAA--A-TATTAAAATAATATTTTATTTT
* *
26761499 TATTATTAAAATTTTAATATAATATTTTATT
1 TATTATTAAAATATTAAAATAATATTTTATT
26761530 AAAACTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 18 0.62
34 1 0.03
36 10 0.34
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (33 bp):
TATTATTAAAATATTAAAATAATATTTTATTTT
Found at i:26762008 original size:24 final size:24
Alignment explanation
Indices: 26761976--26762022 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
26761966 TGACTCAAAC
26761976 AAATAAACAGAATTTAATTGAAAT
1 AAATAAACAGAATTTAATTGAAAT
*
26762000 AAATAAACAGAGTTTAATTGAAA
1 AAATAAACAGAATTTAATTGAAA
26762023 GATTATTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.57, C:0.04, G:0.11, T:0.28
Consensus pattern (24 bp):
AAATAAACAGAATTTAATTGAAAT
Found at i:26765615 original size:5 final size:5
Alignment explanation
Indices: 26765605--26765629 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26765595 CGATGCTTAC
26765605 CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT
26765630 TGCAATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:26769045 original size:23 final size:24
Alignment explanation
Indices: 26769018--26769065 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
26769008 TGTTATAAAT
26769018 TTTAAAATATATT-ATAAAAATAA
1 TTTAAAATATATTAATAAAAATAA
* * *
26769041 TTTAATATATTTTAATAAATATAA
1 TTTAAAATATATTAATAAAAATAA
26769065 T
1 T
26769066 AGTATATACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
TTTAAAATATATTAATAAAAATAA
Found at i:26771301 original size:20 final size:20
Alignment explanation
Indices: 26771265--26771302 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26771255 ATTTATGATT
*
26771265 CCTTATTTCTATCTCATTAG
1 CCTTATTTCAATCTCATTAG
*
26771285 CCTTATTTCAATTTCATT
1 CCTTATTTCAATCTCATT
26771303 TCGTATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.24, G:0.03, T:0.53
Consensus pattern (20 bp):
CCTTATTTCAATCTCATTAG
Found at i:26772386 original size:28 final size:29
Alignment explanation
Indices: 26772344--26772402 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 29
26772334 TTTAATTAAT
26772344 TTTTTAAAATTTAAAAAAAAATAAAATTA
1 TTTTTAAAATTTAAAAAAAAATAAAATTA
** *
26772373 TTTTTAAAA-TTAAAAAGCATTAAAATTA
1 TTTTTAAAATTTAAAAAAAAATAAAATTA
26772401 TT
1 TT
26772403 AATATATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (29 bp):
TTTTTAAAATTTAAAAAAAAATAAAATTA
Found at i:26772666 original size:2 final size:2
Alignment explanation
Indices: 26772661--26772685 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26772651 TAAGTTATTT
26772661 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
26772686 TTTCACTGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26790230 original size:24 final size:25
Alignment explanation
Indices: 26790191--26790240 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
26790181 ATGTGTTTAT
*
26790191 TTTTTAAATTTATTAA-ATAATATA
1 TTTTTAAATTTATTAAGAAAATATA
26790215 TTTTTATAATTT-TTAAGAAAATATA
1 TTTTTA-AATTTATTAAGAAAATATA
26790240 T
1 T
26790241 ATTTGCTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 10 0.43
25 13 0.57
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
TTTTTAAATTTATTAAGAAAATATA
Found at i:26795803 original size:22 final size:23
Alignment explanation
Indices: 26795775--26795818 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
26795765 CAAACAATAA
26795775 ATGATTT-TTAAACGAGG-TTTAC
1 ATGATTTATTAAAC-AGGCTTTAC
26795797 ATGATTTATTAAACAGGCTTTA
1 ATGATTTATTAAACAGGCTTTA
26795819 AACAAACAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (23 bp):
ATGATTTATTAAACAGGCTTTAC
Found at i:26801277 original size:26 final size:27
Alignment explanation
Indices: 26801222--26801283 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
26801212 AAATGTATTT
* *
26801222 CTTGTTATATCTTTTTATCAACAAGTA
1 CTTGTTCTATCTTTTTATCAACAAGAA
*
26801249 CTTGTTCTATC-TTTTATCAATAAGAA
1 CTTGTTCTATCTTTTTATCAACAAGAA
26801275 CTTGTTCTA
1 CTTGTTCTA
26801284 ATTTACTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 22 0.69
27 10 0.31
ACGTcount: A:0.27, C:0.16, G:0.08, T:0.48
Consensus pattern (27 bp):
CTTGTTCTATCTTTTTATCAACAAGAA
Found at i:26803847 original size:22 final size:23
Alignment explanation
Indices: 26803820--26803862 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
26803810 CCTATGTTCA
26803820 AAACTA-ACAATTTTCACTTTAC
1 AAACTAGACAATTTTCACTTTAC
* *
26803842 AAACTAGTCATTTTTCACTTT
1 AAACTAGACAATTTTCACTTT
26803863 TAAGCTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.35, C:0.21, G:0.02, T:0.42
Consensus pattern (23 bp):
AAACTAGACAATTTTCACTTTAC
Found at i:26807828 original size:5 final size:6
Alignment explanation
Indices: 26807791--26807830 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
26807781 CAAGGGGGAG
* *
26807791 TTGGGG TTGGAT TTGGGT TTGGGT TTGGGT TT-GGT TTGGG
1 TTGGGT TTGGGT TTGGGT TTGGGT TTGGGT TTGGGT TTGGG
26807831 GGCGGAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.03, C:0.00, G:0.50, T:0.47
Consensus pattern (6 bp):
TTGGGT
Found at i:26811528 original size:22 final size:21
Alignment explanation
Indices: 26811498--26811560 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
26811488 ATAATATATC
26811498 AAAT-ACATTTAAAAACATTA
1 AAATAACATTTAAAAACATTA
*
26811518 AAATAAACA-TTACAAA-A-T-
1 AAAT-AACATTTAAAAACATTA
26811536 AAATAA-ATTTAAAATACATTA
1 AAATAACATTTAAAA-ACATTA
26811557 AAAT
1 AAAT
26811561 TTTTTTATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
16 1 0.03
17 7 0.21
18 5 0.15
19 2 0.06
20 6 0.18
21 10 0.29
22 3 0.09
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (21 bp):
AAATAACATTTAAAAACATTA
Found at i:26811735 original size:23 final size:24
Alignment explanation
Indices: 26811691--26811835 Score: 169
Period size: 23 Copynumber: 6.2 Consensus size: 24
26811681 ATAACATCCA
26811691 AATAACAAAAATAACAACCAAAAC
1 AATAACAAAAATAACAACCAAAAC
*
26811715 AATAGCAAAAATAACAA-CAAAAC
1 AATAACAAAAATAACAACCAAAAC
* *
26811738 AATAGCAAAAATAACAACAAAAAC
1 AATAACAAAAATAACAACCAAAAC
26811762 -ATCAACAAAAATAACAA-C-AAA-
1 AAT-AACAAAAATAACAACCAAAAC
*
26811783 AATAACACGAAAATAGCAACCAAAAC
1 AATAACA--AAAATAACAACCAAAAC
*
26811809 AGTAA-AAAAAT-ACAACCAAAAC
1 AATAACAAAAATAACAACCAAAAC
26811831 AATAA
1 AATAA
26811836 TATAATTTTT
Statistics
Matches: 105, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
21 4 0.04
22 19 0.18
23 39 0.37
24 35 0.33
25 4 0.04
26 4 0.04
ACGTcount: A:0.69, C:0.19, G:0.03, T:0.09
Consensus pattern (24 bp):
AATAACAAAAATAACAACCAAAAC
Found at i:26811752 original size:47 final size:46
Alignment explanation
Indices: 26811691--26811835 Score: 163
Period size: 47 Copynumber: 3.1 Consensus size: 46
26811681 ATAACATCCA
26811691 AATAACAAAAATAACAACCAAAACAATAGCAAAAATAACAACAAAAC
1 AATAACAAAAATAACAACCAAAACAATA-CAAAAATAACAACAAAAC
* *
26811738 AATAGCAAAAATAACAACAAAAAC-ATCAACAAAAATAACAAC-AAA-
1 AATAACAAAAATAACAACCAAAACAAT--ACAAAAATAACAACAAAAC
* * *
26811783 AATAACACGAAAATAGCAACCAAAACAGTAAAAAAAT-ACAACCAAAAC
1 AATAACA--AAAATAACAACCAAAACAATACAAAAATAACAA-CAAAAC
26811831 AATAA
1 AATAA
26811836 TATAATTTTT
Statistics
Matches: 83, Mismatches: 7, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
45 10 0.12
46 13 0.16
47 53 0.64
48 7 0.08
ACGTcount: A:0.69, C:0.19, G:0.03, T:0.09
Consensus pattern (46 bp):
AATAACAAAAATAACAACCAAAACAATACAAAAATAACAACAAAAC
Found at i:26811795 original size:12 final size:12
Alignment explanation
Indices: 26811694--26811807 Score: 106
Period size: 12 Copynumber: 9.7 Consensus size: 12
26811684 ACATCCAAAT
26811694 AACAAAAATAAC
1 AACAAAAATAAC
* * *
26811706 AACCAAAACAAT
1 AACAAAAATAAC
*
26811718 AGCAAAAATAAC
1 AACAAAAATAAC
* *
26811730 AAC-AAAACAAT
1 AACAAAAATAAC
*
26811741 AGCAAAAATAAC
1 AACAAAAATAAC
* *
26811753 AACAAAAACATC
1 AACAAAAATAAC
26811765 AACAAAAATAAC
1 AACAAAAATAAC
26811777 AACAAAAATAAC
1 AACAAAAATAAC
* *
26811789 -ACGAAAATAGC
1 AACAAAAATAAC
*
26811800 AACCAAAA
1 AACAAAAA
26811808 CAGTAAAAAA
Statistics
Matches: 79, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
11 17 0.22
12 62 0.78
ACGTcount: A:0.69, C:0.19, G:0.04, T:0.08
Consensus pattern (12 bp):
AACAAAAATAAC
Found at i:26814660 original size:20 final size:22
Alignment explanation
Indices: 26814623--26814667 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
26814613 TAAAAATTCC
*
26814623 AAAATTATGAATATATTTTAAA
1 AAAATTATGAATAAATTTTAAA
26814645 AAAATTAT-AA-AAATTTTAAA
1 AAAATTATGAATAAATTTTAAA
26814665 AAA
1 AAA
26814668 TCTAAAGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.55
21 2 0.09
22 8 0.36
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
AAAATTATGAATAAATTTTAAA
Found at i:26814925 original size:26 final size:26
Alignment explanation
Indices: 26814891--26814943 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
26814881 ATTTTTTTAA
* *
26814891 ATTTAACTCAATTCGACTCGAATTTT
1 ATTTAACTCAACTCGACTCGAAATTT
* * *
26814917 ATTTTACTCGACTCGATTCGAAATTT
1 ATTTAACTCAACTCGACTCGAAATTT
26814943 A
1 A
26814944 GGATGATAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.42
Consensus pattern (26 bp):
ATTTAACTCAACTCGACTCGAAATTT
Found at i:26820226 original size:15 final size:15
Alignment explanation
Indices: 26820208--26820238 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26820198 ATAATTTTTT
*
26820208 TATATAATTCTAAAA
1 TATAGAATTCTAAAA
26820223 TATAGAATTCTAAAA
1 TATAGAATTCTAAAA
26820238 T
1 T
26820239 TTTAAACAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (15 bp):
TATAGAATTCTAAAA
Found at i:26823609 original size:15 final size:15
Alignment explanation
Indices: 26823591--26823619 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26823581 ATTTTTTTCA
26823591 ATTTTTTTCTTTTTG
1 ATTTTTTTCTTTTTG
26823606 ATTTTTTTCTTTTT
1 ATTTTTTTCTTTTT
26823620 ATCAAACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.03, T:0.83
Consensus pattern (15 bp):
ATTTTTTTCTTTTTG
Found at i:26824569 original size:5 final size:5
Alignment explanation
Indices: 26824561--26824621 Score: 63
Period size: 5 Copynumber: 11.8 Consensus size: 5
26824551 TGAAAAATAA
*
26824561 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA- ATAA- AAAAT GAAAAT GAAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT
26824611 GAAAAT GAAAA
1 -AAAAT -AAAA
26824622 ATTAAAAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
4 6 0.12
5 24 0.46
6 22 0.42
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:26824569 original size:6 final size:6
Alignment explanation
Indices: 26824553--26824629 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
26824543 AAAAGTAATG
26824553 AAAAAT AAAAA- ATAAAAT -AAAAT -AAAAT -AAAAT AAAAAT AAAAAAT
1 AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT
* * *
26824599 GAAAAT GAAAAT GAAAAT GAAAAATT AAAAA
1 AAAAAT AAAAAT AAAAAT -AAAAA-T AAAAA
26824630 AATTAATTAG
Statistics
Matches: 63, Mismatches: 2, Indels: 11
0.83 0.03 0.14
Matches are distributed among these distances:
5 16 0.25
6 31 0.49
7 15 0.24
8 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:26824609 original size:25 final size:26
Alignment explanation
Indices: 26824554--26824629 Score: 61
Period size: 26 Copynumber: 3.0 Consensus size: 26
26824544 AAAGTAATGA
* *
26824554 AAAATAAAAAATAAAATAAAAT-AAAAT
1 AAAAT-AAAAATGAAA-AATATAAAAAT
*
26824581 AAAATAAAAAT-AAAAA-ATGAAAAT
1 AAAATAAAAATGAAAAATATAAAAAT
*
26824605 GAAAATGAAAATGAAAAAT-TAAAAA
1 -AAAATAAAAATGAAAAATATAAAAA
26824630 AATTAATTAG
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
23 2 0.05
24 7 0.16
25 13 0.30
26 16 0.37
27 5 0.12
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (26 bp):
AAAATAAAAATGAAAAATATAAAAAT
Found at i:26829430 original size:26 final size:26
Alignment explanation
Indices: 26829401--26829451 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26829391 ACGTAACCTA
*
26829401 AGTTAATTTTGTTTTCGTTTTCTTAG
1 AGTTAATTTTGTTTTCATTTTCTTAG
26829427 AGTTAATTTTGTTTTCATTTTCTTA
1 AGTTAATTTTGTTTTCATTTTCTTA
26829452 AAATATAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.18, C:0.08, G:0.12, T:0.63
Consensus pattern (26 bp):
AGTTAATTTTGTTTTCATTTTCTTAG
Found at i:26830154 original size:13 final size:13
Alignment explanation
Indices: 26830131--26830161 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26830121 TAATTTTAAA
26830131 ATTTT-TAAAATT
1 ATTTTATAAAATT
26830143 ATTTTATAAAATT
1 ATTTTATAAAATT
26830156 ATTTTA
1 ATTTTA
26830162 GAATAATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.28
13 13 0.72
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:26840140 original size:59 final size:60
Alignment explanation
Indices: 26840050--26840167 Score: 148
Period size: 59 Copynumber: 2.0 Consensus size: 60
26840040 TTTGTCTAAG
* * * * * *
26840050 TTAGGCCCTGAACTTTGCAACTGTTCTCACATTGGG-CTAGAACTTTTTCTTAATCCAAA
1 TTAGACCCTAAACTTGGCAAATGTTCCCACATTGGGACTACAACTTTTTCTTAATCCAAA
* * *
26840109 TTAGACCCTAAACTTGGCAAATGTTCCCACATTGGGACTTCAACTTTTTTTTTATCCAA
1 TTAGACCCTAAACTTGGCAAATGTTCCCACATTGGGACTACAACTTTTTCTTAATCCAA
26840168 GTTAATCCTA
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
59 31 0.63
60 18 0.37
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (60 bp):
TTAGACCCTAAACTTGGCAAATGTTCCCACATTGGGACTACAACTTTTTCTTAATCCAAA
Found at i:26840341 original size:92 final size:90
Alignment explanation
Indices: 26840186--26840369 Score: 217
Period size: 92 Copynumber: 2.0 Consensus size: 90
26840176 TAAAAACCTT
** * * *
26840186 AAAGTTCAAACCTTAATGTGGGAATAATTGTCAAGTTCAGGCCCCAATGTGAGAACAATTGCCAA
1 AAAGTTCAAACCCCAATGTGGGAATAATTGCCAAGTTCAAGCCCCAATGTGAGAACAACTGCCAA
* * *
26840251 GTTTTAGGGCTTAACTTTGACCCAAAA
66 G-TTTAGGACTTAA-ATTGAACCAAAA
* ** * *
26840278 AAAGTTCAAGCCCCAATGTGGGAA-AAGTTGCCAAGTTCAAGTTCTAATGTGAGAATAACTGCCA
1 AAAGTTCAAACCCCAATGTGGGAATAA-TTGCCAAGTTCAAGCCCCAATGTGAGAACAACTGCCA
26840342 AGTTTAGGACTTAAATTGAACCAAAA
65 AGTTTAGGACTTAAATTGAACCAAAA
26840368 AA
1 AA
26840370 GAAAGTTTAG
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
90 12 0.15
91 13 0.17
92 53 0.68
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26
Consensus pattern (90 bp):
AAAGTTCAAACCCCAATGTGGGAATAATTGCCAAGTTCAAGCCCCAATGTGAGAACAACTGCCAA
GTTTAGGACTTAAATTGAACCAAAA
Found at i:26840409 original size:93 final size:92
Alignment explanation
Indices: 26840231--26840409 Score: 202
Period size: 93 Copynumber: 1.9 Consensus size: 92
26840221 TTCAGGCCCC
* * * * *
26840231 AATGTGAGAACAATTGCCAAGTTTTAGGGCTTAACTTTGACCCAAAAAAAGTTCAAGCCCCAATG
1 AATGTGAGAACAACTGCCAAGTTTTAGGACTTAACATTGACCAAAAAAAAGTTCAAGCCCCAATA
* * *
26840296 TGGGAAAAGTTGCCAAGTTCAAGTTCT
66 TGAGAAAAATTACCAAGTTCAAGTTCT
* * *
26840323 AATGTGAGAATAACTGCCAAG-TTTAGGACTTAA-ATTGAACCAAAAAAGAAAGTT-TAGACCTC
1 AATGTGAGAACAACTGCCAAGTTTTAGGACTTAACATTG-ACC-AAAAA-AAAGTTCAAG-CCCC
26840385 AATATGAGAAAAATTACCAAGTTCA
62 AATATGAGAAAAATTACCAAGTTCA
26840410 TGTAACACCC
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
90 3 0.04
91 14 0.19
92 25 0.35
93 30 0.42
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.25
Consensus pattern (92 bp):
AATGTGAGAACAACTGCCAAGTTTTAGGACTTAACATTGACCAAAAAAAAGTTCAAGCCCCAATA
TGAGAAAAATTACCAAGTTCAAGTTCT
Found at i:26842030 original size:81 final size:81
Alignment explanation
Indices: 26841884--26842105 Score: 263
Period size: 81 Copynumber: 2.8 Consensus size: 81
26841874 TTAACCAGTA
* * * *
26841884 CACGATACTGCTCACACAAGCTGATGAGAATCTGTAATGTATGCCGGACCTCAGCCATCGATACA
1 CACGATGCTGCTCACACAAGCTGATGAGAATCTGCAACGTATGCAGGACCTCAGCCATCGATACA
* *
26841949 GTCCA-GATTACCCCCT
66 GTCCATG-CTACCCACT
* * * * *
26841965 TATGATGCTGCTCACACAAGCTGATGAGAATTTGCAACGTATGCAGGACCTTAGCCATCGCTACA
1 CACGATGCTGCTCACACAAGCTGATGAGAATCTGCAACGTATGCAGGACCTCAGCCATCGATACA
*
26842030 GTCTATGCTACCCACT
66 GTCCATGCTACCCACT
* *
26842046 CACGATGCTGCTCACACAAGCTG-TCAGGAA-CTGCAACATATGCAGGATCC-CAGCCATCGA
1 CACGATGCTGCTCACACAAGCTGATGA-GAATCTGCAACGTATGCAGGA-CCTCAGCCATCGA
26842106 AGGGGTCCAT
Statistics
Matches: 119, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
80 25 0.21
81 93 0.78
82 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (81 bp):
CACGATGCTGCTCACACAAGCTGATGAGAATCTGCAACGTATGCAGGACCTCAGCCATCGATACA
GTCCATGCTACCCACT
Found at i:26842204 original size:28 final size:28
Alignment explanation
Indices: 26842173--26842267 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 28
26842163 GATGGAACCC
26842173 AATTTTAAATTTTAAATT-GTTTAAATTA
1 AATTTTAAA-TTTAAATTAGTTTAAATTA
** *
26842201 AA-TTTAAATTTATTTTGAGTTTGAATT-
1 AATTTTAAATTTAAATT-AGTTTAAATTA
* *
26842228 TATTTTAAATTTAAATTTATTTTAAATTA
1 AATTTTAAATTTAAA-TTAGTTTAAATTA
*
26842257 AATTTAAAATT
1 AATTTTAAATT
26842268 AAGTTTAAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
26 6 0.12
27 7 0.13
28 28 0.54
29 11 0.21
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (28 bp):
AATTTTAAATTTAAATTAGTTTAAATTA
Found at i:26842209 original size:6 final size:6
Alignment explanation
Indices: 26842192--26842276 Score: 63
Period size: 6 Copynumber: 15.0 Consensus size: 6
26842182 TTTTAAATTG
* * * * *
26842192 TTTAAA -TTAAA TTTAAA TTT-AT TTTGAG TTTGAA TTT-AT TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * *
26842237 TTTAAA TTT-AT TTTAAA -TTAAA TTTAAA ATTAAG TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
26842277 ATGTCCAAAT
Statistics
Matches: 63, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
5 22 0.35
6 41 0.65
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (6 bp):
TTTAAA
Found at i:26842227 original size:17 final size:17
Alignment explanation
Indices: 26842198--26842262 Score: 96
Period size: 17 Copynumber: 3.9 Consensus size: 17
26842188 ATTGTTTAAA
26842198 TTAAATTTAAATTTATT
1 TTAAATTTAAATTTATT
* * *
26842215 TTGAGTTTGAATTTATT
1 TTAAATTTAAATTTATT
26842232 TTAAATTTAAATTTATT
1 TTAAATTTAAATTTATT
26842249 TTAAA-TTAAATTTA
1 TTAAATTTAAATTTA
26842263 AAATTAAGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
16 9 0.21
17 33 0.79
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (17 bp):
TTAAATTTAAATTTATT
Found at i:26842275 original size:34 final size:34
Alignment explanation
Indices: 26842192--26842276 Score: 100
Period size: 34 Copynumber: 2.5 Consensus size: 34
26842182 TTTTAAATTG
** *
26842192 TTTAAATTAAATTTAAATTTATTTTGAGTTTGAA
1 TTTAAATTAAATTTAAATTTATTTTGAAATTAAA
**
26842226 TTTATTTTAAATTTAAATTTATTTT-AAATTAAA
1 TTTAAATTAAATTTAAATTTATTTTGAAATTAAA
*
26842259 TTTAAAATTAAGTTTAAA
1 TTT-AAATTAAATTTAAA
26842277 ATGTCCAAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 8 0.19
34 34 0.81
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (34 bp):
TTTAAATTAAATTTAAATTTATTTTGAAATTAAA
Found at i:26842390 original size:14 final size:15
Alignment explanation
Indices: 26842371--26842407 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
26842361 ACCTATACCT
26842371 AAACCCAATTTATA-
1 AAACCCAATTTATAC
*
26842385 AAACCC-ATTTTTAC
1 AAACCCAATTTATAC
26842399 AAACCCAAT
1 AAACCCAAT
26842408 ACCCAGGCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 6 0.30
14 12 0.60
15 2 0.10
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (15 bp):
AAACCCAATTTATAC
Found at i:26842930 original size:14 final size:14
Alignment explanation
Indices: 26842911--26842943 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
26842901 AAATATTTAC
*
26842911 ATTAAATATATAAT
1 ATTAAATAAATAAT
26842925 ATTAAATAAATAAT
1 ATTAAATAAATAAT
26842939 ATTAA
1 ATTAA
26842944 TAATAATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATTAAATAAATAAT
Found at i:26843118 original size:2 final size:2
Alignment explanation
Indices: 26843111--26843135 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26843101 ACAGATTTTA
26843111 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
26843136 AGAAACTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26843978 original size:30 final size:30
Alignment explanation
Indices: 26843944--26844037 Score: 122
Period size: 30 Copynumber: 3.1 Consensus size: 30
26843934 GTTTTGTTAA
26843944 AAAAATCATATTTTGACCTCTAAA-TTTCTC
1 AAAAATCATATTTTGACC-CTAAACTTTCTC
26843974 AAAAATCATATTTTGACCCCTAAACTTTCT-
1 AAAAATCATATTTTGA-CCCTAAACTTTCTC
* *
26844004 AAAAAT-ACCATTTTGACCCTAAACTTTTTC
1 AAAAATCA-TATTTTGACCCTAAACTTTCTC
26844034 AAAA
1 AAAA
26844038 TTGCATTCTA
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
29 13 0.22
30 38 0.66
31 7 0.12
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAAATCATATTTTGACCCTAAACTTTCTC
Found at i:26844044 original size:29 final size:28
Alignment explanation
Indices: 26843953--26844110 Score: 90
Period size: 29 Copynumber: 5.4 Consensus size: 28
26843943 AAAAAATCAT
*
26843953 ATTTTGACCTCTAAA-TTTCTCAAAAATC
1 ATTTTGACC-CTAAACTTTCTCAAAATTC
* *
26843981 ATATTTTGACCCCTAAACTTTCTAAAAATACC
1 --ATTTTGA-CCCTAAACTTTCTCAAAAT-TC
*
26844013 ATTTTGACCCTAAACTTTTTCAAAATTGC
1 ATTTTGACCCTAAACTTTCTCAAAATT-C
* * * * *
26844042 ATTCTAACTCC-GAAC-TTCACAAATATTAT
1 ATTTTGAC-CCTAAACTTTCTCAAA-ATT-C
26844071 ATTTTGACCCCTAAACTTT-TCTAAAATTAC
1 ATTTTGA-CCCTAAACTTTCTC-AAAATT-C
*
26844101 ATTTTTACCC
1 ATTTTGACCC
26844111 CAAAACATCC
Statistics
Matches: 99, Mismatches: 19, Indels: 21
0.71 0.14 0.15
Matches are distributed among these distances:
28 6 0.06
29 40 0.40
30 36 0.36
31 16 0.16
32 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.39
Consensus pattern (28 bp):
ATTTTGACCCTAAACTTTCTCAAAATTC
Found at i:26844088 original size:30 final size:29
Alignment explanation
Indices: 26843945--26844124 Score: 82
Period size: 30 Copynumber: 6.1 Consensus size: 29
26843935 TTTTGTTAAA
* * * *
26843945 AAAATCATATTTTGACCTCTAAATTTCTC
1 AAAATTATATTTTGACCCCTAAACTTCAC
*
26843974 AAAAATCATATTTTGACCCCTAAACTTTCTA-
1 -AAAATTATATTTTGACCCCTAAAC-TTC-AC
* **
26844005 AAAA-TACCATTTTGA-CCCTAAACTTTTTC
1 AAAATTA-TATTTTGACCCCTAAAC-TTCAC
** * * * *
26844034 AAAATTGCATTCTAACTCC-GAACTTCAC
1 AAAATTATATTTTGACCCCTAAACTTCAC
**
26844062 AAATATTATATTTTGACCCCTAAACTTTTC
1 AAA-ATTATATTTTGACCCCTAAACTTCAC
* * * *
26844092 TAAAATTACATTTTTACCCCAAAACATC-C
1 -AAAATTATATTTTGACCCCTAAACTTCAC
26844121 AAAA
1 AAAA
26844125 ATTACCATTT
Statistics
Matches: 114, Mismatches: 27, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
28 10 0.09
29 37 0.32
30 61 0.54
31 6 0.05
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.36
Consensus pattern (29 bp):
AAAATTATATTTTGACCCCTAAACTTCAC
Found at i:26844156 original size:58 final size:59
Alignment explanation
Indices: 26844004--26844310 Score: 317
Period size: 58 Copynumber: 5.3 Consensus size: 59
26843994 TAAACTTTCT
* * * * * * *
26844004 AAAAA-TACCATTTTGACCCTAAACTTTTTCAAAATTGCA-TTCTAACTCCGAACTTCAC
1 AAAAATTACCATTTTGACCCCAAACTTTTCCAAAATTACATTTTTACCACCGAACATC-C
* * * *
26844062 AAATATTA-TATTTTGACCCCTAAACTTTTCTAAAATTACATTTTTACC-CCAAAACATCC
1 AAAAATTACCATTTTGACCCC-AAACTTTTCCAAAATTACATTTTTACCACC-GAACATCC
* * * *
26844121 AAAAATTACCA-TTTGATCCCAAAATTTTCCAAAATTGCATTTTTACCATCGAACAT-C
1 AAAAATTACCATTTTGACCCCAAACTTTTCCAAAATTACATTTTTACCACCGAACATCC
*
26844178 AAAAATTACCATTTTGACCCCAAACTTTTCCAAAATTACTTTTTTACC-CTCGAACATCC
1 AAAAATTACCATTTTGACCCCAAACTTTTCCAAAATTACATTTTTACCAC-CGAACATCC
* * ** *
26844237 -AAAATTACCATTTTGACCTCGAACTTTTCCAAAATTACCA-TTTTACCGTCGAGCATCC
1 AAAAATTACCATTTTGACCCCAAACTTTTCCAAAATTA-CATTTTTACCACCGAACATCC
26844295 AAAAATTACCATTTTG
1 AAAAATTACCATTTTG
26844311 CCCTTAAATT
Statistics
Matches: 209, Mismatches: 28, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
57 12 0.06
58 132 0.63
59 54 0.26
60 11 0.05
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (59 bp):
AAAAATTACCATTTTGACCCCAAACTTTTCCAAAATTACATTTTTACCACCGAACATCC
Found at i:26844192 original size:28 final size:27
Alignment explanation
Indices: 26844148--26844309 Score: 137
Period size: 28 Copynumber: 5.6 Consensus size: 27
26844138 CCCAAAATTT
*
26844148 TCCAAAATT-GCATTTTTACCATCGAACA
1 TCCAAAATTACCA-TTTTACC-TCGAACA
* * * *
26844176 TCAAAAATTACCATTTTGACCCCAAACTTT
1 TCCAAAATTACCATTTT-ACCTCGAAC--A
**
26844206 TCCAAAATTACTTTTTTACCCTCGAACA
1 TCCAAAATTACCATTTTA-CCTCGAACA
*
26844234 TCCAAAATTACCATTTTGACCTCGAACTTT
1 TCCAAAATTACCATTTT-ACCTCGAAC--A
*
26844264 TCCAAAATTACCATTTTACCGTCGAGCA
1 TCCAAAATTACCATTTTACC-TCGAACA
26844292 TCCAAAAATTACCATTTT
1 TCC-AAAATTACCATTTT
26844310 GCCCTTAAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
28 42 0.39
29 24 0.22
30 42 0.39
ACGTcount: A:0.34, C:0.27, G:0.06, T:0.34
Consensus pattern (27 bp):
TCCAAAATTACCATTTTACCTCGAACA
Found at i:26844234 original size:116 final size:115
Alignment explanation
Indices: 26843953--26844338 Score: 369
Period size: 116 Copynumber: 3.3 Consensus size: 115
26843943 AAAAAATCAT
* * * * * * * *
26843953 ATTTTGACCTCTAAA-TTTCTCAAAAATCATATTTTGACCCCTAAACTTTCTAAAAA-TACCATT
1 ATTTTGACCCCTAAACTTT-TCCAAAATTACATTTTTACCCCAAAAC-ATCCAAAAATTACCATT
* * * * *
26844016 TTGACCCTAAACTTTTTCAAAATTGCATTCTAACTCCGAACTTCACAAATATTA-T
64 TTGACCC-AAACTTTTCCAAAATTGCATTTTACCT-CGAACATCA-AAA-ATTACC
*
26844071 ATTTTGACCCCTAAACTTTTCTAAAATTACATTTTTACCCCAAAACATCCAAAAATTACCA-TTT
1 ATTTTGACCCCTAAACTTTTCCAAAATTACATTTTTACCCCAAAACATCCAAAAATTACCATTTT
*
26844135 GATCCCAAAATTTTCCAAAATTGCATTTTTACCATCGAACATCAAAAATTACC
66 GA-CCCAAACTTTTCCAAAATTGCA-TTTTACC-TCGAACATCAAAAATTACC
* *
26844188 ATTTTGACCCC-AAACTTTTCCAAAATTACTTTTTTACCCTC-GAACATCC-AAAATTACCATTT
1 ATTTTGACCCCTAAACTTTTCCAAAATTACATTTTTACCC-CAAAACATCCAAAAATTACCATTT
* * *
26844250 TGACCTCGAACTTTTCCAAAATTACCATTTTACCGTCGAGCATCCAAAAATTACC
65 TGACC-CAAACTTTTCCAAAATT-GCATTTTACC-TCGAACAT-CAAAAATTACC
* *
26844305 ATTTTG-CCCTTAAA--TTTCCAAAAATCACATTTTT
1 ATTTTGACCCCTAAACTTTTCC-AAAATTACATTTTT
26844339 TAACCTCAAA
Statistics
Matches: 230, Mismatches: 25, Indels: 28
0.81 0.09 0.10
Matches are distributed among these distances:
115 17 0.07
116 86 0.37
117 66 0.29
118 57 0.25
119 4 0.02
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.35
Consensus pattern (115 bp):
ATTTTGACCCCTAAACTTTTCCAAAATTACATTTTTACCCCAAAACATCCAAAAATTACCATTTT
GACCCAAACTTTTCCAAAATTGCATTTTACCTCGAACATCAAAAATTACC
Found at i:26850742 original size:17 final size:17
Alignment explanation
Indices: 26850720--26850782 Score: 74
Period size: 17 Copynumber: 3.6 Consensus size: 17
26850710 TCACCCAAAA
*
26850720 AAAGAAAAAAGGGAAAG
1 AAAGAAAAAAGAGAAAG
*
26850737 AAAGAAAAAAGAAAAAG
1 AAAGAAAAAAGAGAAAG
*
26850754 AAA-AAGAAAAGAGAAGAA
1 AAAGAA-AAAAGAGAA-AG
26850772 AAAGAAAAAAG
1 AAAGAAAAAAG
26850783 GAGAGGTCGA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
16 2 0.05
17 26 0.67
18 9 0.23
19 2 0.05
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (17 bp):
AAAGAAAAAAGAGAAAG
Found at i:26850749 original size:11 final size:12
Alignment explanation
Indices: 26850733--26850782 Score: 52
Period size: 11 Copynumber: 4.3 Consensus size: 12
26850723 GAAAAAAGGG
26850733 AAAGAAAGA-AA
1 AAAGAAAGAGAA
*
26850744 AAAGAAAAAGAA
1 AAAGAAAGAGAA
26850756 AAAGAAAAGAGAA
1 AAAG-AAAGAGAA
*
26850769 GAA-AAAGA-AA
1 AAAGAAAGAGAA
26850779 AAAG
1 AAAG
26850783 GAGAGGTCGA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
10 4 0.12
11 13 0.41
12 6 0.19
13 9 0.28
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (12 bp):
AAAGAAAGAGAA
Found at i:26850751 original size:6 final size:6
Alignment explanation
Indices: 26850718--26850780 Score: 60
Period size: 6 Copynumber: 10.8 Consensus size: 6
26850708 TTTCACCCAA
** *
26850718 AAAAAG AAAAAAG GGAAAG AAAGA- AAAAAG AAAAAG AAAAAG -AAAAG
1 AAAAAG -AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
*
26850765 -AGAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAA
26850781 AGGAGAGGTC
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
5 13 0.28
6 27 0.59
7 6 0.13
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:26851246 original size:112 final size:112
Alignment explanation
Indices: 26851098--26851306 Score: 321
Period size: 112 Copynumber: 1.9 Consensus size: 112
26851088 TAGTCATTTT
*
26851098 TAATATTTTCATTCATACGAGCTTTGCCTCCAATAAAATTCAAATTTATCCACCTTAC-AACCTT
1 TAATATTTTCATTCATACGAGCTTTGCCTCCAATAAAACTCAAATTTATCCACCTTACAAACC-T
*
26851162 GTTTAAGCATTTTTGCATCGAAATAACGATTAGTGGACCAATGATTCG
65 GTTCAAGCATTTTTGCATCGAAATAACGATTAGTGGACCAATGATTCG
* * * *
26851210 TAATCTTTTCATTCATACGAGCTTTGTCTCTAATAAAACTCAATTTTATCCACCTTACAAACCTG
1 TAATATTTTCATTCATACGAGCTTTGCCTCCAATAAAACTCAAATTTATCCACCTTACAAACCTG
* * *
26851275 TTCAAGCATTTTTGCATTGAAATGACTATTAG
66 TTCAAGCATTTTTGCATCGAAATAACGATTAG
26851307 AGGTCTAACG
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
112 83 0.95
113 4 0.05
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (112 bp):
TAATATTTTCATTCATACGAGCTTTGCCTCCAATAAAACTCAAATTTATCCACCTTACAAACCTG
TTCAAGCATTTTTGCATCGAAATAACGATTAGTGGACCAATGATTCG
Found at i:26852013 original size:78 final size:78
Alignment explanation
Indices: 26851919--26853374 Score: 976
Period size: 78 Copynumber: 18.7 Consensus size: 78
26851909 AAGCTGCAAC
* * *
26851919 CCAATCTCTTACCCCGATCATGGGGAAGATTGAAGCATCTAATCTCTT-CCCTTAATCAGAAGGC
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCC-TAATCAGAAGGC
*
26851983 AGATTGAAAACA-A
65 AGATTGAAGACACA
* * * * *
26851996 TCCAATCTCTTATCCCGATTATGGGGCAAATTAAAGCATCTAATCTTTTACCCTAATCAG-AGGA
1 -CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAAGG-
* *
26852060 GAGATTG-A-ATACA
64 CAGATTGAAGACACA
* ** * *
26852073 CTAATCTCTTACCCTTATCATGGGGCGGATTGAAGCATCCAATCTTTTACCCTAATCAG-AGGAG
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAAGG-C
*
26852137 AGATTG-A-ATACA
65 AGATTGAAGACACA
* ** *
26852149 CTAATCTCTTACCCTTATCATGGGGCGGATTGAAGCATCCAATCTTTTACCCTAATCA-AAGGGC
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAA-GGC
*
26852213 AGATTAAAGACACA
65 AGATTGAAGACACA
* *
26852227 CCAATCTTTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAATTA-AAGGGC
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAA-GGC
26852291 AGATTGAAGACACA
65 AGATTGAAGACACA
* * * * * * *
26852305 CAAATCTCTTACCCCGATCATGGGTCAGATTGAAGAAACTAATCTTTTATCCTAATCAGAGGGCA
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAAGGCA
26852370 GATTGAAGACACA
66 GATTGAAGACACA
** * * * * * * *
26852383 CCAATCTCTTACTTCGATCATGAGGCAGGTTAAAGTATCCAATCTTTTACTCTAATTAGAGGGCA
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAAGGCA
26852448 GATTGAAGACACA
66 GATTGAAGACACA
* * * * *
26852461 CCAATCTCTTACCCCGATCATGGGGTAGATAGAAGCAGCTAATCTTTTACCCTAATCAGAGGGCA
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAAGGCA
* *
26852526 AATTGAAG-CATA
66 GATTGAAGACACA
* ** * *** * * **
26852538 -CAATCTTTTACCCTAATTAAAAGACAGATTGAAG-ATACACCAATCTCTTACCCCGATCATG--
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCAT---CCAATCTTTTACCCTAATCA-GAA
* * *
26852599 GGACAAATTAAAG-CA-T
62 GG-CAGATTGAAGACACA
* ** ** * * **
26852615 CCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCATAGAA
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAG-CA-TCCAATCTTTTACCCTAATC--AGAA
*
26852680 --CAGATTGAAG-CA-T
62 GGCAGATTGAAGACACA
* ** * * ** *
26852693 CCAATCTTTTACCCTAATCA-GAGGGCAAATTGAAGACACACCAATCTTTTACCCCGATCATG-G
1 CCAATCTCTTACCCCGATCATG-GGGCAGATTGAAG-CA-TCCAATCTTTTACCCTAATCA-GAA
* *
26852756 GGCAGATTAAAG-CA-G
62 GGCAGATTGAAGACACA
* * ** * * * ** *
26852771 CTAATCTTTTACCCTAATCA-GAGAGCAGATTGAAGACACACCAATCTCTTACCCCGATTATG--
1 CCAATCTCTTACCCCGATCATG-GGGCAGATTGAAG-CA-TCCAATCTTTTACCCTAATCA-GAA
*
26852833 GGACATATTGAAG-CATCA
62 GG-CAGATTGAAGACA-CA
* * *** * * * * * * *
26852851 --AATATTTTACCTTAAT-AAGAGGGCAGATTGAAGCAGCTAATCTTTTACCCTAATTAAAAAGT
1 CCAATCTCTTACCCCGATCATG-GGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAAGGC
*
26852913 AGATTGAAG-CA-T
65 AGATTGAAGACACA
* ** * * *
26852925 CCAATCTTTTACCCTAATCA-GATGGCAGATTGAAGACACACCAATCTTTTACCCTAATCAGAGG
1 CCAATCTCTTACCCCGATCATG-GGGCAGATTGAAG-CA-TCCAATCTTTTACCCTAATCAGAAG
* *
26852989 GTAGATTGAAGACATA
63 GCAGATTGAAGACACA
* * * *
26853005 CCAATCTCTTACCTCGATCATGGGGTAGATTGAAGCATCCAATCTTTTATCCTAATCAGAGGGCA
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAAGGCA
26853070 GATTGAAGACACA
66 GATTGAAGACACA
* * * * *
26853083 CCAATCTCTTACCCTGATCGTGAGGCAGATTGAAGCAGCTAATCTTTTACCCTAATCA-AAGGGC
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAA-GGC
*
26853147 ATATTGAAGACACA
65 AGATTGAAGACACA
* ** *
26853161 CTAATCTCTTACCCCGATCAT-GGTTAGATTGAAGCATCCAATCTTTTTACCTTAATCA-AAGGG
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATC-TTTTACCCTAATCAGAA-GG
*
26853224 TAGATTGAAGACACA
64 CAGATTGAAGACACA
** * ** * * ** *
26853239 CTGATCTTTTACCCTAATCACGGGGCA-AGTTGAAGCCATCCAATCTCTTACCCCGATCATG-GG
1 CCAATCTCTTACCCCGATCATGGGGCAGA-TTGAAG-CATCCAATCTTTTACCCTAATCA-GAAG
*
26853302 GCAGATTGAAGATACCA
63 GCAGATTGAAGACA-CA
* * * *
26853319 TCCAATCTCTTACCTCGATAATGAGGCAGACTGAAGACCTCATCCAATCTTTTACC
1 -CCAATCTCTTACCCCGATCATGGGGCAGATTGAAG----CATCCAATCTTTTACC
26853375 ACGATCATGG
Statistics
Matches: 1146, Mismatches: 180, Indels: 98
0.80 0.13 0.07
Matches are distributed among these distances:
75 1 0.00
76 212 0.18
77 41 0.04
78 770 0.67
79 42 0.04
80 40 0.03
81 24 0.02
82 1 0.00
84 15 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (78 bp):
CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAAGGCA
GATTGAAGACACA
Found at i:26852554 original size:272 final size:273
Alignment explanation
Indices: 26851919--26853097 Score: 1057
Period size: 272 Copynumber: 4.3 Consensus size: 273
26851909 AAGCTGCAAC
* * * * *
26851919 CCAATCTCTTACCCCGATCATGGGGAAGATTGAAGCATCTAATCTCTT-CCCTTAATCAGAAGGC
1 CCAATCTCTTACCCCGATCATGGGGTAGATAGAAGCAGCTAATCTTTTACCC-TAATCAGAGGGC
* * ** * * * * *
26851983 AGATTGAAAACA-ATCCAATCTCTTATCCC-GATTATGGGGCAAATTAAAG-CA-TCTAATCTTT
65 AGATTGAAGACACA-CCAATCTCTTA-CCCTAATTAAAGGGCAGATTGAAGACACACAAATCTCT
** * * * * ** *
26852044 TACCCTAATCA-GAGGAGAGATTGAA-TACACTAATCTCTTACCCTTATCATGGGGCGGATTGAA
128 TACCCCGATCATG-GGACAGATTGAAGCA-ACTAATCTTTTACCCTAATCAAAGGGCAGATTGAA
* * * * * * * *
26852107 G-CA-TCCAATCTTTTACCCTAATCA-GAGGAGAGATTGAATACA-CTAATCTCTTACCCTTATC
191 GACACACCAATCTCTTACCC-GATCATGAGG-CAGATTGAA-GCATCCAATCTTTTACCCTAATC
* *
26852168 ATG-GGGCGGATTGAAG-CA-T
253 A-GAGGGCAGATTGAAGACACA
* ** ** * * * **
26852187 CCAATCTTTTACCCTAATCAAAGGGCAGATTA-AAGACACACCAATCTTTTACCCCGATCATG-G
1 CCAATCTCTTACCCCGATCATGGGGTAGA-TAGAAG-CA-GCTAATCTTTTACCCTAATCA-GAG
* *
26852250 GGCAGATTGAAG-CA-TCCAATCTTTTACCCTAATTAAAGGGCAGATTGAAGACACACAAATCTC
62 GGCAGATTGAAGACACACCAATCTCTTACCCTAATTAAAGGGCAGATTGAAGACACACAAATCTC
* * * *
26852313 TTACCCCGATCATGGGTCAGATTGAAGAAACTAATCTTTTATCCTAATCAGAGGGCAGATTGAAG
127 TTACCCCGATCATGGGACAGATTGAAGCAACTAATCTTTTACCCTAATCAAAGGGCAGATTGAAG
* * * * * *
26852378 ACACACCAATCTCTTACTTCGATCATGAGGCAGGTTAAAGTATCCAATCTTTTACTCTAATTAGA
192 ACACACCAATCTCTTAC-CCGATCATGAGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGA
26852443 GGGCAGATTGAAGACACA
256 GGGCAGATTGAAGACACA
26852461 CCAATCTCTTACCCCGATCATGGGGTAGATAGAAGCAGCTAATCTTTTACCCTAATCAGAGGGCA
1 CCAATCTCTTACCCCGATCATGGGGTAGATAGAAGCAGCTAATCTTTTACCCTAATCAGAGGGCA
* * * * * * *
26852526 AATTGAAG-CATA-CAATCTTTTACCCTAATTAAAAGACAGATTGAAGATACACCAATCTCTTAC
66 GATTGAAGACACACCAATCTCTTACCCTAATTAAAGGGCAGATTGAAGACACACAAATCTCTTAC
* * * *
26852589 CCCGATCATGGGACAAATTAAAGCATCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACAC
131 CCCGATCATGGGACAGATTGAAGCAACTAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACAC
*
26852654 ACCAATCTCTTACCCCGATCAT-AGAACAGATTGAAGCATCCAATCTTTTACCCTAATCAGAGGG
196 ACCAATCTCTTA-CCCGATCATGAG-GCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAGGG
*
26852718 CAAATTGAAGACACA
259 CAGATTGAAGACACA
* * *
26852733 CCAATCTTTTACCCCGATCATGGGGCAGATTA-AAGCAGCTAATCTTTTACCCTAATCAGAGAGC
1 CCAATCTCTTACCCCGATCATGGGGTAGA-TAGAAGCAGCTAATCTTTTACCCTAATCAGAGGGC
** * * * * *
26852797 AGATTGAAGACACACCAATCTCTTACCCCGATT-ATGGGACATATTGAAG-CA-TCAAATATTTT
65 AGATTGAAGACACACCAATCTCTTACCCTAATTAAAGGG-CAGATTGAAGACACACAAATCTCTT
*** * * * * ** *
26852859 ACCTTAAT-AAGAGGGCAGATTGAAGCAGCTAATCTTTTACCCTAATTAAAAAGTAGATTGAAG-
129 ACCCCGATCATG-GGACAGATTGAAGCAACTAATCTTTTACCCTAATCAAAGGGCAGATTGAAGA
* * * *
26852922 CA-TCCAATCTTTTACCCTAATCA-GATGGCAGATTGAAGACACACCAATCTTTTACCCTAATCA
193 CACACCAATCTCTTACCC-GATCATGA-GGCAGATTGAAG-CA-TCCAATCTTTTACCCTAATCA
* *
26852985 GAGGGTAGATTGAAGACATA
254 GAGGGCAGATTGAAGACACA
* * * * *
26853005 CCAATCTCTTACCTCGATCATGGGGTAGATTGAAGCATCCAATCTTTTATCCTAATCAGAGGGCA
1 CCAATCTCTTACCCCGATCATGGGGTAGATAGAAGCAGCTAATCTTTTACCCTAATCAGAGGGCA
26853070 GATTGAAGACACACCAATCTCTTACCCT
66 GATTGAAGACACACCAATCTCTTACCCT
26853098 GATCGTGAGG
Statistics
Matches: 747, Mismatches: 130, Indels: 64
0.79 0.14 0.07
Matches are distributed among these distances:
267 3 0.00
268 51 0.07
269 10 0.01
270 104 0.14
271 21 0.03
272 488 0.65
273 20 0.03
274 50 0.07
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.27
Consensus pattern (273 bp):
CCAATCTCTTACCCCGATCATGGGGTAGATAGAAGCAGCTAATCTTTTACCCTAATCAGAGGGCA
GATTGAAGACACACCAATCTCTTACCCTAATTAAAGGGCAGATTGAAGACACACAAATCTCTTAC
CCCGATCATGGGACAGATTGAAGCAACTAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACAC
ACCAATCTCTTACCCGATCATGAGGCAGATTGAAGCATCCAATCTTTTACCCTAATCAGAGGGCA
GATTGAAGACACA
Found at i:26852598 original size:350 final size:350
Alignment explanation
Indices: 26852073--26853397 Score: 1484
Period size: 350 Copynumber: 3.8 Consensus size: 350
26852063 ATTGAATACA
* * * * * **
26852073 CTAATCTCTTACCCTTATCATG-GGGCGGATTGAAG-CA-TCCAATCTTTTACCCTAATCA-GAG
1 CTAATCTTTTACCCTAATCA-GAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCATG-G
* * * * * *
26852134 GAGAGATTGAATACA-CTAATCTCTTACCCTTATCATG-GGGCGGATTGAAGCAT-CCAATCTTT
64 GATAGATTGAA-GCATCTAATCTTTTACCCTAATCA-GAGGGCAGATTGAAGCATACTAATCTTT
* * * * *
26852196 TACCCTAATCAAAGGGCAGATTAAAGACACACCAATCTTTTACCCCGATCATGGGGCAGATTGAA
127 TACCCTAATCAAAAGACAGATTGAAGACA-TCCAATCTCTTACCCCGATCATGGGGCAGATTGAA
* *
26852261 G-CATCCAATCTTTTACCCTAATTAAAGGGCAGATTGAAGACACACAAATCTCTTACCCCGATCA
191 GACATCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCA
* * *
26852325 TGGGTCAGATTGAAGAAACTAATCTTTTATCCTAATCAGAGGGCAGATTGAAGACACACCAATCT
256 TGGGTCAGATTGAAGCATCCAATCTTTTATCCTAATCAGAGGGCAGATTGAAGACACACCAATCT
* * * *
26852390 CTTACTTCGATCATGAGGCAGGTTAAAGTAT
321 CTTAC-CCGATCATGAGGCAGATTAAAGCAG
* * * *
26852421 CCAATCTTTTACTCTAATTAGAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCATGGGG
1 CTAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCATGGGA
* * *
26852486 TAGATAGAAGCAGCTAATCTTTTACCCTAATCAGAGGGCAAATTGAAGCATAC-AATCTTTTACC
66 TAGATTGAAGCATCTAATCTTTTACCCTAATCAGAGGGCAGATTGAAGCATACTAATCTTTTACC
* * * *
26852550 CTAATTAAAAGACAGATTGAAGATACA-CCAATCTCTTACCCCGATCATGGGACAAATTAAAG-C
131 CTAATCAAAAGACAGATTGAAG--ACATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGAC
*
26852613 ATCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCATAG
194 ATCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCATGG
** * * *
26852678 AACAGATTGAAGCATCCAATCTTTTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTTTT
259 GTCAGATTGAAGCATCCAATCTTTTATCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTT
*
26852743 ACCCCGATCATGGGGCAGATTAAAGCAG
324 A-CCCGATCATGAGGCAGATTAAAGCAG
* *
26852771 CTAATCTTTTACCCTAATCAGAGAGCAGATTGAAGACACACCAATCTCTTACCCCGATTATGGGA
1 CTAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCATGGGA
* * * * * * *
26852836 CATATTGAAGCATCAAATATTTTACCTTAATAAGAGGGCAGATTGAAGCA-GCTAATCTTTTACC
66 TAGATTGAAGCATCTAATCTTTTACCCTAATCAGAGGGCAGATTGAAGCATACTAATCTTTTACC
* * * ** *
26852900 CTAATTAAAA-AGTAGATTGAAG-CATCCAATCTTTTACCCTAATCA-GATGGCAGATTGAAGAC
131 CTAATCAAAAGA-CAGATTGAAGACATCCAATCTCTTACCCCGATCATG-GGGCAGATTGAAGAC
* * * * *
26852962 ACACCAATCTTTTACCCTAATCAGAGGGTAGATTGAAGACATACCAATCTCTTACCTCGATCATG
194 A-TCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCAT-
26853027 GGGT-AGATTGAAGCATCCAATCTTTTATCCTAATCAGAGGGCAGATTGAAGACACACCAATCTC
257 GGGTCAGATTGAAGCATCCAATCTTTTATCCTAATCAGAGGGCAGATTGAAGACACACCAATCTC
* *
26853091 TTACCCTGATCGTGAGGCAGATTGAAGCAG
322 TTACCC-GATCATGAGGCAGATTAAAGCAG
* * * *
26853121 CTAATCTTTTACCCTAATCAAAGGGCATATTGAAGACACACTAATCTCTTACCCCGATCAT-GGT
1 CTAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCATGGGA
* * * * * *
26853185 TAGATTGAAGCATCCAATCTTTTTACCTTAATCAAAGGGTAGATTGAAGACACACTGATCTTTTA
66 TAGATTGAAGCATCTAATC-TTTTACCCTAATCAGAGGGCAGATTGAAG-CATACTAATCTTTTA
*** * *
26853250 CCCTAATCACGGGGCA-AGTTGAAGCCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGA
129 CCCTAATCAAAAGACAGA-TTGAAGACATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG-
* * * * * * *
26853314 TACCATCCAATCTCTTA-CCTCGAT-AATGAGGCAGACTGAAGACCTCATCCAATCTTTTACCAC
192 -A-CATCCAATCTTTTACCCT-AATCAAAG-GGCAGATTGAAGA-CACA-CCAATCTCTTACCCC
*
26853377 GATCATGGGGCAGATTGAAGC
251 GATCATGGGTCAGATTGAAGC
26853398 TACCATCTTA
Statistics
Matches: 827, Mismatches: 117, Indels: 57
0.83 0.12 0.06
Matches are distributed among these distances:
347 4 0.00
348 53 0.06
349 29 0.04
350 608 0.74
351 7 0.01
352 28 0.03
353 32 0.04
354 6 0.01
355 24 0.03
356 7 0.01
357 29 0.04
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (350 bp):
CTAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCATGGGA
TAGATTGAAGCATCTAATCTTTTACCCTAATCAGAGGGCAGATTGAAGCATACTAATCTTTTACC
CTAATCAAAAGACAGATTGAAGACATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACAT
CCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACACACCAATCTCTTACCCCGATCATGGGT
CAGATTGAAGCATCCAATCTTTTATCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTAC
CCGATCATGAGGCAGATTAAAGCAG
Found at i:26855473 original size:22 final size:21
Alignment explanation
Indices: 26855448--26855488 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
26855438 TGTCATTTAT
26855448 TTTACCTTCCTATTTATTTTGC
1 TTTACCTTCCT-TTTATTTTGC
* *
26855470 TTTATCTTTCTTTTATTTT
1 TTTACCTTCCTTTTATTTT
26855489 TATTTTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.12, C:0.17, G:0.02, T:0.68
Consensus pattern (21 bp):
TTTACCTTCCTTTTATTTTGC
Found at i:26860699 original size:43 final size:43
Alignment explanation
Indices: 26860587--26860726 Score: 154
Period size: 43 Copynumber: 3.3 Consensus size: 43
26860577 TCTAGCACCT
* *
26860587 CAGTGCATCATCGAATAAACCGAAGAAAATATACTGGCACACA
1 CAGTGCATCATCGAATAAACCGAAGCAATTATACTGGCACACA
* * * * * *
26860630 TAGTGCACCATCGAACAAGCCAAAGCATTTATACTGGCACACA
1 CAGTGCATCATCGAATAAACCGAAGCAATTATACTGGCACACA
* * **
26860673 CAGTGCATCATCGAATAAACTGAAGCAATTAAACTAACACACA
1 CAGTGCATCATCGAATAAACCGAAGCAATTATACTGGCACACA
* *
26860716 CAATGAATCAT
1 CAGTGCATCAT
26860727 ATGATATAAC
Statistics
Matches: 77, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
43 77 1.00
ACGTcount: A:0.43, C:0.24, G:0.14, T:0.19
Consensus pattern (43 bp):
CAGTGCATCATCGAATAAACCGAAGCAATTATACTGGCACACA
Found at i:26862468 original size:38 final size:37
Alignment explanation
Indices: 26862368--26862481 Score: 156
Period size: 37 Copynumber: 3.1 Consensus size: 37
26862358 TCAGGCTTTA
* ** *
26862368 TGCCTAGTAGGCTTTGTACCGGTGTTTTTAACCTTTG
1 TGCCTAGTAGGCTTTGTGCCGGTGTTTTTAGGCTGTG
26862405 TGCCTAGTAGGCTTTGTGCCGGTGTTTTTAGGCTGTG
1 TGCCTAGTAGGCTTTGTGCCGGTGTTTTTAGGCTGTG
* * *
26862442 TTCCTAGTAGGCTTTTGTGTCGGTGTTTTCAGGCTGTG
1 TGCCTAGTAGGC-TTTGTGCCGGTGTTTTTAGGCTGTG
26862480 TG
1 TG
26862482 TCGGAGTTTT
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
37 44 0.65
38 24 0.35
ACGTcount: A:0.10, C:0.17, G:0.31, T:0.43
Consensus pattern (37 bp):
TGCCTAGTAGGCTTTGTGCCGGTGTTTTTAGGCTGTG
Found at i:26862482 original size:21 final size:21
Alignment explanation
Indices: 26862457--26862502 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
26862447 AGTAGGCTTT
*
26862457 TGTGTCGGTGTTTTCAGGCTG
1 TGTGTCGGAGTTTTCAGGCTG
*
26862478 TGTGTCGGAGTTTTCAGGTTG
1 TGTGTCGGAGTTTTCAGGCTG
26862499 TGTG
1 TGTG
26862503 CTTAGTAGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.07, C:0.11, G:0.39, T:0.43
Consensus pattern (21 bp):
TGTGTCGGAGTTTTCAGGCTG
Found at i:26862491 original size:59 final size:58
Alignment explanation
Indices: 26862413--26862541 Score: 159
Period size: 59 Copynumber: 2.2 Consensus size: 58
26862403 TGTGCCTAGT
* * * * *
26862413 AGGCTTTGTGCCGGTGTTTTTAGGCTGTGTTCCTAGTAGGCTTTTGTGTCGGTGTTTTC
1 AGGCTGTGTGCCGGAGTTTTCAGGCTGTGTGCCTAGTAGGC-TTTGTGTCGGAGTTTTC
* * *
26862472 AGGCTGTGTGTCGGAGTTTTCAGGTTGTGTGCTTAGTAGGCTTTGTGTCGGAGTTTTC
1 AGGCTGTGTGCCGGAGTTTTCAGGCTGTGTGCCTAGTAGGCTTTGTGTCGGAGTTTTC
* *
26862530 AAGCTGTATGCC
1 AGGCTGTGTGCC
26862542 TAGTAGGCTT
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
58 25 0.42
59 34 0.58
ACGTcount: A:0.10, C:0.15, G:0.33, T:0.42
Consensus pattern (58 bp):
AGGCTGTGTGCCGGAGTTTTCAGGCTGTGTGCCTAGTAGGCTTTGTGTCGGAGTTTTC
Found at i:26862520 original size:37 final size:37
Alignment explanation
Indices: 26862472--26862578 Score: 135
Period size: 37 Copynumber: 2.9 Consensus size: 37
26862462 CGGTGTTTTC
* *
26862472 AGGCTGTGTGTCGGAGTTTTCAGGTTGTGTGCTTAGT
1 AGGCTTTGTGTCGGAGTTTTCAGGTTGTGTGCCTAGT
* * *
26862509 AGGCTTTGTGTCGGAGTTTTCAAGCTGTATGCCTAGT
1 AGGCTTTGTGTCGGAGTTTTCAGGTTGTGTGCCTAGT
* *
26862546 AGGCTTTGTGCCGGTGTTTTCAGGCTT-TGTGCC
1 AGGCTTTGTGTCGGAGTTTTCAGG-TTGTGTGCC
26862579 GATGTTTTCA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
37 58 0.98
38 1 0.02
ACGTcount: A:0.11, C:0.16, G:0.34, T:0.39
Consensus pattern (37 bp):
AGGCTTTGTGTCGGAGTTTTCAGGTTGTGTGCCTAGT
Found at i:26862571 original size:58 final size:58
Alignment explanation
Indices: 26862509--26862636 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 58
26862499 TGTGCTTAGT
* * *
26862509 AGGCTTTGTGTCGGA-GTTTTCAAGCTGTATGCCTAGTAGGCTTTGTGCCGGTGTTTTC
1 AGGCTTTGTG-CCGATGTTTTCAAGCTGTATGCCTAGTAGGCTTCGTGCCGGTGTTTCC
* *
26862567 AGGCTTTGTGCCGATGTTTTCAAGCTGTGTGCCTAGTAGGCTTCGTGTCGGTGTTTCC
1 AGGCTTTGTGCCGATGTTTTCAAGCTGTATGCCTAGTAGGCTTCGTGCCGGTGTTTCC
26862625 AGG-TTGTGTGCC
1 AGGCTT-TGTGCC
26862637 TAGTAGGCTT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
57 5 0.08
58 58 0.92
ACGTcount: A:0.11, C:0.19, G:0.32, T:0.38
Consensus pattern (58 bp):
AGGCTTTGTGCCGATGTTTTCAAGCTGTATGCCTAGTAGGCTTCGTGCCGGTGTTTCC
Found at i:26862572 original size:21 final size:21
Alignment explanation
Indices: 26862546--26862599 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
26862536 TATGCCTAGT
*
26862546 AGGCTTTGTGCCGGTGTTTTC
1 AGGCTTTGTGCCGATGTTTTC
26862567 AGGCTTTGTGCCGATGTTTTC
1 AGGCTTTGTGCCGATGTTTTC
* *
26862588 AAGCTGTGTGCC
1 AGGCTTTGTGCC
26862600 TAGTAGGCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.09, C:0.20, G:0.31, T:0.39
Consensus pattern (21 bp):
AGGCTTTGTGCCGATGTTTTC
Found at i:26862604 original size:95 final size:95
Alignment explanation
Indices: 26862376--26862673 Score: 355
Period size: 95 Copynumber: 3.1 Consensus size: 95
26862366 TATGCCTAGT
* * * * * * *
26862376 AGGCTTTGTACCGGTGTTTTTAACCTTTGTGCCTAGTAGGCTTTGTGCCGGTGTTTTTAGGCTGT
1 AGGCTTTGTGCCGATGTTTTCAAGCTGTGTGCCTAGTAGGCTTTGTGTCGGTGTTTTCAGGCTGT
* *
26862441 GTTCCTAGTAGGCTTTTGTGTCGGTGTTTTC
66 GTGCCTAGTAGGC-TTTGTGCCGGTGTTTTC
* * * * * * *
26862472 AGGCTGTGTGTCGGA-GTTTTCAGGTTGTGTGCTTAGTAGGCTTTGTGTCGGAGTTTTCAAGCTG
1 AGGCTTTGTG-CCGATGTTTTCAAGCTGTGTGCCTAGTAGGCTTTGTGTCGGTGTTTTCAGGCTG
*
26862536 TATGCCTAGTAGGCTTTGTGCCGGTGTTTTC
65 TGTGCCTAGTAGGCTTTGTGCCGGTGTTTTC
* * *
26862567 AGGCTTTGTGCCGATGTTTTCAAGCTGTGTGCCTAGTAGGCTTCGTGTCGGTGTTTCCAGGTTGT
1 AGGCTTTGTGCCGATGTTTTCAAGCTGTGTGCCTAGTAGGCTTTGTGTCGGTGTTTTCAGGCTGT
* *
26862632 GTGCCTAGTAGGCTTCGTGCCGGTGTATTC
66 GTGCCTAGTAGGCTTTGTGCCGGTGTTTTC
* *
26862662 GGGCTATGTGCC
1 AGGCTTTGTGCC
26862674 TAGCAGGCTT
Statistics
Matches: 168, Mismatches: 32, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
94 3 0.02
95 104 0.62
96 59 0.35
97 2 0.01
ACGTcount: A:0.10, C:0.17, G:0.32, T:0.40
Consensus pattern (95 bp):
AGGCTTTGTGCCGATGTTTTCAAGCTGTGTGCCTAGTAGGCTTTGTGTCGGTGTTTTCAGGCTGT
GTGCCTAGTAGGCTTTGTGCCGGTGTTTTC
Found at i:26862622 original size:37 final size:37
Alignment explanation
Indices: 26862567--26862693 Score: 146
Period size: 37 Copynumber: 3.4 Consensus size: 37
26862557 CGGTGTTTTC
* * *
26862567 AGGCTTTGTGCCGATGTTTTCAAGCTGTGTGCCTAGT
1 AGGCTTCGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
* * *
26862604 AGGCTTCGTGTCGGTGTTTCCAGGTTGTGTGCCTAGT
1 AGGCTTCGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
* * * *
26862641 AGGCTTCGTGCCGGTGTATTCGGGCTATGTGCCTAGC
1 AGGCTTCGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
**
26862678 AGGCTTTATGCCGGTG
1 AGGCTTCGTGCCGGTG
26862694 ATCCAATAAC
Statistics
Matches: 75, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.11, C:0.20, G:0.34, T:0.35
Consensus pattern (37 bp):
AGGCTTCGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
Found at i:26868044 original size:21 final size:21
Alignment explanation
Indices: 26868018--26868090 Score: 61
Period size: 21 Copynumber: 3.7 Consensus size: 21
26868008 CATTTTAAAA
26868018 TTCAGGCTTTGTGCCGGTGTT
1 TTCAGGCTTTGTGCCGGTGTT
26868039 TTCAGG-TTGTGTGCC--TAG--
1 TTCAGGCTT-TGTGCCGGT-GTT
*
26868057 -T-AGGCTTTGTGTCGGTGTT
1 TTCAGGCTTTGTGCCGGTGTT
*
26868076 TTCAGGTTTTGTGCC
1 TTCAGGCTTTGTGCC
26868091 TCGTAGGCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 18
0.66 0.05 0.30
Matches are distributed among these distances:
16 8 0.20
17 4 0.10
18 1 0.03
19 1 0.03
20 4 0.10
21 22 0.55
ACGTcount: A:0.07, C:0.16, G:0.33, T:0.44
Consensus pattern (21 bp):
TTCAGGCTTTGTGCCGGTGTT
Found at i:26868073 original size:37 final size:37
Alignment explanation
Indices: 26868021--26868369 Score: 464
Period size: 37 Copynumber: 9.4 Consensus size: 37
26868011 TTTAAAATTC
*
26868021 AGGCTTTGTGCCGGTGTTTTCAGGTTGTGTGCCTAGT
1 AGGCTTTGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
* * * *
26868058 AGGCTTTGTGTCGGTGTTTTCAGGTTTTGTGCCTCGT
1 AGGCTTTGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
**
26868095 AGGCTTTGTGCCAATGTTTTCAGGCTGTGTGCCTAGT
1 AGGCTTTGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
** *
26868132 AGGCTTTGTGCCATTATTTTCAGGCTGTGTGCCTAGT
1 AGGCTTTGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
*
26868169 AGGCTTTGTGTCGGTGTTTTCAGGCTGTGTGCCTAGT
1 AGGCTTTGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
* * *
26868206 AGGCTTTATGCCGGTGTTTTCAAGCTTTGTGCCTAGT
1 AGGCTTTGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
* * *
26868243 AGGCTTTGTGCTGTTGTTTTCAGGCTATGTGCCTAGT
1 AGGCTTTGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
* * *
26868280 AGGCTTCGTGCCGGTGTTTTCAAGCTATGTGCCTAGT
1 AGGCTTTGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
* * * * *
26868317 AGGCTTCGTGCTGGTGTATTCGGGCTGTGTGCCTAGC
1 AGGCTTTGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
*
26868354 AGGCTTTATGCCGGTG
1 AGGCTTTGTGCCGGTG
26868370 ATCCAAGAAC
Statistics
Matches: 275, Mismatches: 37, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 275 1.00
ACGTcount: A:0.11, C:0.18, G:0.32, T:0.39
Consensus pattern (37 bp):
AGGCTTTGTGCCGGTGTTTTCAGGCTGTGTGCCTAGT
Found at i:26868125 original size:21 final size:21
Alignment explanation
Indices: 26868095--26868164 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 21
26868085 TGTGCCTCGT
*
26868095 AGGCTTTGTGCCAATGTTTTC
1 AGGCTGTGTGCCAATGTTTTC
*
26868116 AGGCTGTGTGCCTA-G---T-
1 AGGCTGTGTGCCAATGTTTTC
* * *
26868132 AGGCTTTGTGCCATTATTTTC
1 AGGCTGTGTGCCAATGTTTTC
26868153 AGGCTGTGTGCC
1 AGGCTGTGTGCC
26868165 TAGTAGGCTT
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
16 11 0.30
17 1 0.03
20 2 0.05
21 23 0.62
ACGTcount: A:0.13, C:0.20, G:0.29, T:0.39
Consensus pattern (21 bp):
AGGCTGTGTGCCAATGTTTTC
Done.