Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 100 of 132
Found at i:30642020 original size:98 final size:98
Alignment explanation
Indices: 30641798--30642407 Score: 425
Period size: 99 Copynumber: 6.2 Consensus size: 98
30641788 AAACATGAAT
* * * * * *
30641798 ATATGAAGGGAAAGGTTAAGGCCGCAACGGCGAACCCAGTACCATGAAG-T-TGAAGGG-AAGGA
1 ATATGAAGGGAAAGGTTGAGGCCGTAACGACGAATCCGGTACCA-AAAGATATGAAGGGAAAGG-
* * * *
30641860 TTGAGGCCGCAACGGGGAATCCGGTACCTTAAAAG
64 TTGAGGCCGCAACGGCGAACCCAGTACCTTAGAAG
* * * * *
30641895 ATGTGATGGGAAAGGTTAAAGCTGTAACGACGAATCCGGTACCACAAAGATATGAAGGGAAAGGT
1 ATATGAAGGGAAAGGTTGAGGCCGTAACGACGAATCCGGTACCA-AAAGATATGAAGGGAAAGGT
* * * * * **
30641960 TGAGGTCGTAACGGTGAACCCAATATC-GCGAAG
65 TGAGGCCGCAACGGCGAACCCAGTACCTTAGAAG
* * * *
30641993 ATATGAAGGGAAAGGTTGAGGCCGTAACAACGAA-CCTGGTACCTTAAAAAATGTGATGGGAAAG
1 ATATGAAGGGAAAGGTTGAGGCCGTAACGACGAATCC-GGTACC--AAAAGATATGAAGGGAAAG
* * **
30642057 GTTGAGACCGCAACAGCGAACCCAGTACCACAG-AG
63 GTTGAGGCCGCAACGGCGAACCCAGTACCTTAGAAG
* * * * * * * * *
30642092 ATATGAAGGAAAAGGTTGAGGACGCAATGGCGAACCCGGTACTATGAAGATTTGAAGGGAAAGGT
1 ATATGAAGGGAAAGGTTGAGGCCGTAACGACGAATCCGGTACCA-AAAGATATGAAGGGAAAGGT
* * * * *
30642157 GGAGGTCGCAACGACGAACTCGGTACCTTAGAAG
65 TGAGGCCGCAACGGCGAACCCAGTACCTTAGAAG
* * * * * * * *
30642191 ATGTGATGGAAAAGATTGAGGCCGTAACGACGAATCTGATA-TAATGAGATATGAAGGGAAAGGT
1 ATATGAAGGGAAAGGTTGAGGCCGTAACGACGAATCCGGTACCAA-AAGATATGAAGGGAAAGGT
* *
30642255 TGAGGCCGCAACGGCGAACCCGGTATCTTAGAA-
65 TGAGGCCGCAACGGCGAACCCAGTACCTTAGAAG
* * ** * * * *
30642288 A-ATGTAATGGGAACGATTGAGGCCGCGACGACGAATCCGGTACCATGAAGCTGTGATGGGAAAG
1 ATATG-AA-GGGAAAGGTTGAGGCCGTAACGACGAATCCGGTACCA-AAAGATATGAAGGGAAAG
* * *
30642352 GTCGAGGCCGCAATGGCGAACCC-GATACCAT-GAAG
63 GTTGAGGCCGCAACGGCGAACCCAG-TACCTTAGAAG
*
30642387 AGT-TGAAGGAAAAGGTTGAGG
1 A-TATGAAGGGAAAGGTTGAGG
30642408 TTGCAAAGAC
Statistics
Matches: 397, Mismatches: 97, Indels: 37
0.75 0.18 0.07
Matches are distributed among these distances:
96 2 0.01
97 44 0.11
98 166 0.42
99 175 0.44
100 10 0.03
ACGTcount: A:0.35, C:0.17, G:0.32, T:0.17
Consensus pattern (98 bp):
ATATGAAGGGAAAGGTTGAGGCCGTAACGACGAATCCGGTACCAAAAGATATGAAGGGAAAGGTT
GAGGCCGCAACGGCGAACCCAGTACCTTAGAAG
Found at i:30642062 original size:50 final size:49
Alignment explanation
Indices: 30641805--30642422 Score: 355
Period size: 49 Copynumber: 12.6 Consensus size: 49
30641795 AATATATGAA
* * * *
30641805 GGGAAAGGTTAAGGCCGCAACGGCGAACCCAGTACC-ATGAAG-T-TGAA
1 GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTA-GAAGATGTGAT
** * *
30641852 GGG-AAGGATTGAGGCCGCAACGGGGAATCCGGTACCTTAAAAGATGTGAT
1 GGGAAAGG-TTGAGGCCGCAACGACGAACCCGGTACC-TAGAAGATGTGAT
* * * * * * * *
30641902 GGGAAAGGTTAAAGCTGTAACGACGAATCCGGTACC-ACAAAGATATGAA
1 GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTA-GAAGATGTGAT
* * ** ** * ** * *
30641951 GGGAAAGGTTGAGGTCGTAACGGTGAACCCAATATCGCGAAGATATGAA
1 GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTAGAAGATGTGAT
* * * * *
30642000 GGGAAAGGTTGAGGCCGTAACAACGAACCTGGTACCTTAAAAAATGTGAT
1 GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACC-TAGAAGATGTGAT
* * * * *
30642050 GGGAAAGGTTGAGACCGCAAC-AGCGAACCCAGTACC-ACAGAGATATGAA
1 GGGAAAGGTTGAGGCCGCAACGA-CGAACCCGGTACCTAGA-AGATGTGAT
* * * * * *
30642099 GGAAAAGGTTGAGGACGCAATGGCGAACCCGGTA-CTATGAAGATTTGAA
1 GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTA-GAAGATGTGAT
* * *
30642148 GGGAAAGGTGGAGGTCGCAACGACGAACTCGGTACCTTAGAAGATGTGAT
1 GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACC-TAGAAGATGTGAT
* * * * * * * *
30642198 GGAAAAGATTGAGGCCGTAACGACGAATCTGATA--TA-ATGAGATATGAA
1 GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTAGA--AGATGTGAT
* * * *
30642246 GGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTATCTTAGAAAATGTAAT
1 GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTA-CCTAGAAGATGTGAT
* * * * *
30642296 GGGAACGATTGAGGCCGCGACGACGAATCCGGTACC-ATGAAGCTGTGAT
1 GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTA-GAAGATGTGAT
* * * * *
30642345 GGGAAAGGTCGAGGCCGCAATGGCGAACCCGATACC-ATGAAGA-GTTGAA
1 GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTA-GAAGATG-TGAT
* ** *
30642394 GGAAAAGGTTGAGGTTGCAAAGACGAACC
1 GGGAAAGGTTGAGGCCGCAACGACGAACC
30642423 TAGTACCTTA
Statistics
Matches: 436, Mismatches: 111, Indels: 46
0.74 0.19 0.08
Matches are distributed among these distances:
46 5 0.01
47 29 0.07
48 43 0.10
49 215 0.49
50 135 0.31
51 8 0.02
52 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.32, T:0.17
Consensus pattern (49 bp):
GGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTAGAAGATGTGAT
Found at i:30642085 original size:148 final size:147
Alignment explanation
Indices: 30641798--30642407 Score: 507
Period size: 148 Copynumber: 4.1 Consensus size: 147
30641788 AAACATGAAT
* *
30641798 ATATGAAGGGAAAGGTTAAGGCCGCAACGGCGAACCCAGTACCATGAAG-TTGAAGGG-AAGGAT
1 ATATGAAGGGAAAGGTTGAGGACGCAACGGCGAACCCAGTA-CATGAAGATTGAAGGGAAAGG-T
** * * *
30641861 TGAGGCCGCAACGGGGAATCC-GGTACCTTAAAAGATGTGATGGGAAAGGTT-AAAGCTGTAACG
64 TGAGGCCGCAACGACGAA-CCTGGTACCTTAAAAGATGTGATGGGAAAGGTTGAGAGCCGCAACG
* *
30641924 ACGAATCCGGTACCACAAAG
128 ACGAACCCAGTACCACAAAG
* * * * **
30641944 ATATGAAGGGAAAGGTTGAGGTCGTAACGGTGAACCCAATATCGCGAAGATATGAAGGGAAAGGT
1 ATATGAAGGGAAAGGTTGAGGACGCAACGGCGAACCCAGTA-CATGAAGAT-TGAAGGGAAAGGT
* * *
30642009 TGAGGCCGTAACAACGAACCTGGTACCTTAAAAAATGTGATGGGAAAGGTTGAGA-CCGCAAC-A
64 TGAGGCCGCAACGACGAACCTGGTACCTTAAAAGATGTGATGGGAAAGGTTGAGAGCCGCAACGA
*
30642072 GCGAACCCAGTACCACAGAG
129 -CGAACCCAGTACCACAAAG
* * *
30642092 ATATGAAGGAAAAGGTTGAGGACGCAATGGCGAACCCGGTACTATGAAGATTTGAAGGGAAAGGT
1 ATATGAAGGGAAAGGTTGAGGACGCAACGGCGAACCCAGTAC-ATGAAGA-TTGAAGGGAAAGGT
* * * * * *
30642157 GGAGGTCGCAACGACGAA-CTCGGTACCTTAGAAGATGTGATGGAAAAGATTGAG-GCCGTAACG
64 TGAGGCCGCAACGACGAACCT-GGTACCTTAAAAGATGTGATGGGAAAGGTTGAGAGCCGCAACG
* * * *
30642220 ACGAA-TCTGATA-TA-ATGAG
128 ACGAACCCAG-TACCACA-AAG
* * * * *
30642239 ATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTATCTTAGAA-AATGTAATGGGAACG
1 ATATGAAGGGAAAGGTTGAGGACGCAACGGCGAACCCAGTA-CAT-GAAGATTG-AA-GGGAAAG
* * * * * *
30642303 ATTGAGGCCGCGACGACGAATCC-GGTACCAT-GAAGCTGTGATGGGAAAGGTCGAG-GCCGCAA
62 GTTGAGGCCGCAACGACGAA-CCTGGTACCTTAAAAGATGTGATGGGAAAGGTTGAGAGCCGCAA
* * **
30642365 TGGCGAACCC-GATACCATGAAG
126 CGACGAACCCAG-TACCACAAAG
*
30642387 AGT-TGAAGGAAAAGGTTGAGG
1 A-TATGAAGGGAAAGGTTGAGG
30642408 TTGCAAAGAC
Statistics
Matches: 378, Mismatches: 63, Indels: 44
0.78 0.13 0.09
Matches are distributed among these distances:
146 44 0.12
147 90 0.24
148 234 0.62
149 9 0.02
150 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.32, T:0.17
Consensus pattern (147 bp):
ATATGAAGGGAAAGGTTGAGGACGCAACGGCGAACCCAGTACATGAAGATTGAAGGGAAAGGTTG
AGGCCGCAACGACGAACCTGGTACCTTAAAAGATGTGATGGGAAAGGTTGAGAGCCGCAACGACG
AACCCAGTACCACAAAG
Found at i:30642243 original size:246 final size:245
Alignment explanation
Indices: 30641991--30642465 Score: 589
Period size: 246 Copynumber: 1.9 Consensus size: 245
30641981 AATATCGCGA
* * *
30641991 AGATATGAAGGGAAAGGTTGAGGCCGTAACAACGAACCTGGTACCTTAAAAAATGTGATGGGAAA
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACAACGAACCCGGTACCTTAAAAAATGTAATGGGAAA
* *
30642056 GGTTGAGACCGCAAC-AGCGAACCCAGTACCACAG-AGATATGAAGGAAAAGGTTGAGGACGCAA
66 GATTGAGACCGCAACGA-CGAACCCAGTACCA-AGAAGATATGAAGGAAAAGGTCGAGGACGCAA
* * * * * *
30642119 TGGCGAACCCGGTACTATGAAGATTTGAAGGGAAAGGTGGAGGTCGCAACGACGAA-CTCGGTAC
129 TGGCGAACCCGATACCATGAAGAGTTGAAGGAAAAGGTGGAGGTCGCAAAGACGAACCT-AGTAC
* *
30642183 CTTAGAAGAT-GTGATGGAAAAGATTGAGGCCGTAACGACGAATCTGATATAATG
193 CTTAG-A-ATCATGACGGAAAAGATTGAGGCCGTAACGACGAATCTGATATAATG
** * * *
30642237 AGATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTATCTTAGAAAATGTAATGGGAAC
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACAACGAACCCGGTACCTTAAAAAATGTAATGGGAAA
* * * * * * * * * *
30642302 GATTGAGGCCGCGACGACGAATCCGGTACCATGAAGCTGTGATGGGAAAGGTCGAGGCCGCAATG
66 GATTGAGACCGCAACGACGAACCCAGTACCAAGAAGATATGAAGGAAAAGGTCGAGGACGCAATG
* *
30642367 GCGAACCCGATACCATGAAGAGTTGAAGGAAAAGGTTGAGGTTGCAAAGACGAACCTAGTACCTT
131 GCGAACCCGATACCATGAAGAGTTGAAGGAAAAGGTGGAGGTCGCAAAGACGAACCTAGTACCTT
**
30642432 AGAATCATGACGGAGCAGATTGAGGCCGTAACGA
196 AGAATCATGACGGAAAAGATTGAGGCCGTAACGA
30642466 TAAATCTTTT
Statistics
Matches: 193, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
244 2 0.01
245 26 0.13
246 162 0.84
247 3 0.02
ACGTcount: A:0.35, C:0.17, G:0.31, T:0.17
Consensus pattern (245 bp):
AGATATGAAGGGAAAGGTTGAGGCCGCAACAACGAACCCGGTACCTTAAAAAATGTAATGGGAAA
GATTGAGACCGCAACGACGAACCCAGTACCAAGAAGATATGAAGGAAAAGGTCGAGGACGCAATG
GCGAACCCGATACCATGAAGAGTTGAAGGAAAAGGTGGAGGTCGCAAAGACGAACCTAGTACCTT
AGAATCATGACGGAAAAGATTGAGGCCGTAACGACGAATCTGATATAATG
Found at i:30642782 original size:78 final size:78
Alignment explanation
Indices: 30642662--30643571 Score: 899
Period size: 78 Copynumber: 11.7 Consensus size: 78
30642652 GAAGATTCCG
*** * * ** * ** *
30642662 ATCTCTTACCCCGATAATGGGACAGATTACAGTTATCTGATCTTTTACCTTGAGCCTAAGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAGGGCAGA
*
30642727 TCACCATCAGCTA
66 TCACCATCAGCCA
** * * * * * *
30642740 ATCTCTTACCCCGAGTTTGGGGCAAATTGTAACTATCCGATCTTTTACCCCAAGCCT-GAGGTAG
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAG-GGCAG
* *
30642804 AACACCATCAGTCA
65 ATCACCATCAGCCA
* * * * * * * *
30642818 ATCTCTTATCCCGAGCTTGGGGCAGATTACAGCCATCCAATTTTTTACCCCGAGCTTATGGCAAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAGGGCAGA
*
30642883 TCACTATCAGCCA
66 TCACCATCAGCCA
* * * * * *
30642896 ATCTCTTACCCCGAGCCTAGGGTAGATTGTAGCCATCCGATCTTTTACCCAGAGCTTGGGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAGGGCAGA
* *
30642961 TCACTATCAACCA
66 TCACCATCAGCCA
* * ** *
30642974 ATCTCTTACCCCGAGCCTGAGGCAGATTGTAGCCATCCGATCTTTTACCTTGAGCTTAGGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAGGGCAGA
*
30643039 TCACCATCAACCA
66 TCACCATCAGCCA
* ** * * *
30643052 ATCTCTTACCCCGAGCTTGGAACAGATTGCAGCCATTCGATCTTTTACCTCGAGCCTAAGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAGGGCAGA
*
30643117 TCACCATCAACCA
66 TCACCATCAGCCA
* * * * * **
30643130 ATCTCTTACCCCGAGCTTGAGACAGATTGCAGCCATCCAATCTTTTACCCCAAATCT-GGGACAG
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAGGG-CAG
30643194 ATCACCATCAGCCA
65 ATCACCATCAGCCA
* ** * *
30643208 ATCTCTTACCCCGAGCCTGAGATAGATTGCAGCCATTCGATCTTTTACCTCGAGCCTAGGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAGGGCAGA
* *
30643273 TCACCATTAGTCA
66 TCACCATCAGCCA
* * * * * **
30643286 ATCTCTTACCCCGAGCCTGGGGTAAATTACAGCCATCCGATCTTTTACCTCGAG-CTTGGATAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAGGGCAGA
*
30643350 TCACCATCAGCTA
66 TCACCATCAGCCA
* ** * * * *
30643363 ATCTCTTACCTCGAGCCTGGGATAAATTGTAGCCATTCGATCTTTTACCCCGAGCCTAGGGCAAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAGGGCAGA
*
30643428 TCACTATCAGCCA
66 TCACCATCAGCCA
* * * * * *
30643441 ATCTCTTACCCCGAGCCTGAGGCAGATTGTAGCCATTCGATCTTTTACCCTGAGCTTGGGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAGGGCAGA
* *
30643506 TCACCATAAGCTA
66 TCACCATCAGCCA
* * * * * * * *
30643519 ATCTCTTCCCCCAATCATTGGGCAAATTGCAGCCATCCAATCTCTTACCCCGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGA
30643572 TCATGGGGCA
Statistics
Matches: 696, Mismatches: 131, Indels: 10
0.83 0.16 0.01
Matches are distributed among these distances:
77 67 0.10
78 626 0.90
79 3 0.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (78 bp):
ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATCCGATCTTTTACCCCGAGCCTAGGGCAGA
TCACCATCAGCCA
Found at i:30643587 original size:39 final size:39
Alignment explanation
Indices: 30642816--30643588 Score: 330
Period size: 39 Copynumber: 19.8 Consensus size: 39
30642806 CACCATCAGT
* * *
30642816 CAATCTCTTATCCCGAGCTTGGGGCAGATTACAGCCATC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
* * * ** * ** * *
30642855 CAATTTTTTACCCCGAGCTTATGGCAAATCACTA-TCAGC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGC-AGCCATC
* * *
30642894 CAATCTCTTACCCCGAGCCTAGGGTAGATTGTAGCCATC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
* * * * ** * *
30642933 CGATCTTTTACCCAGAGCTTGGGGCAGATCACTA-TCAAC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGC-AGCCATC
* *
30642972 CAATCTCTTACCCCGAGCCTGAGGCAGATTGTAGCCATC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
* * ** * *
30643011 CGATCTTTTACCTTGAGCTTAGGGCAGA-T-CA-CCATCAAC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCAT---C
* ** *
30643050 CAATCTCTTACCCCGAGCTTGGAACAGATTGCAGCCATT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
* * * **
30643089 CGATCTTTTACCTCGAGCCTAAGGCAGA-T-CA-CCATCAAC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCAT---C
* * *
30643128 CAATCTCTTACCCCGAGCTTGAGACAGATTGCAGCCATC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
* * ** *
30643167 CAATCTTTTACCCCAAATCTGGGACAGA-T-CA-CCATCAGC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCAT---C
* ** *
30643206 CAATCTCTTACCCCGAGCCTGAGATAGATTGCAGCCATT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
* * * * *
30643245 CGATCTTTTACCTCGAGCCTAGGGCAGA-T-CA-CCATTAGT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCA-T--C
* * *
30643284 CAATCTCTTACCCCGAGCCTGGGGTAAATTACAGCCATC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
* * * * **
30643323 CGATCTTTTACCTCGAG-CTTGGATAGA-T-CA-CCATC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
* ** * * *
30643358 AGCTAATCTCTTACCTCGAGCCTGGGATAAATTGTAGCCATT
1 --C-AATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
* * * * ** * *
30643400 CGATCTTTTACCCCGAGCCTAGGGCAAATCACTA-TCAGC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGC-AGCCATC
* * *
30643439 CAATCTCTTACCCCGAGCCTGAGGCAGATTGTAGCCATT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
* * * *
30643478 CGATCTTTTACCCTGAGCTTGGGGCAGA-T-CA-CCATAAGC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCAT---C
* * * * * * *
30643517 TAATCTCTTCCCCCAATCATTGGGCAAATTGCAGCCATC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
* *
30643556 CAATCTCTTACCCCGATCATGGGGCAGATTGCA
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCA
30643589 ATCATTCGAA
Statistics
Matches: 535, Mismatches: 156, Indels: 86
0.69 0.20 0.11
Matches are distributed among these distances:
35 5 0.01
36 21 0.04
37 11 0.02
38 29 0.05
39 424 0.79
40 10 0.02
41 12 0.02
42 23 0.04
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (39 bp):
CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATC
Found at i:30645393 original size:30 final size:30
Alignment explanation
Indices: 30645359--30645690 Score: 254
Period size: 30 Copynumber: 11.1 Consensus size: 30
30645349 TGACCCATTG
* *
30645359 ACTTCTCTAAAGTTACATTTTAACCCTCAA
1 ACTTCTCCAAAATTACATTTTAACCCTCAA
* *
30645389 ACTTCTCTAAAATTACATTTTAACCCTAAA
1 ACTTCTCCAAAATTACATTTTAACCCTCAA
* * **
30645419 ACTTTTCTAAAATTACATTTCGACCC-CTAA
1 ACTTCTCCAAAATTACATTTTAACCCTC-AA
*
30645449 ACTTCTCCAAAAATACATTTTAACCCT--A
1 ACTTCTCCAAAATTACATTTTAACCCTCAA
* * *
30645477 ACTTTTCCAAAATCACATTTTAACCC-CGA
1 ACTTCTCCAAAATTACATTTTAACCCTCAA
* *
30645506 ACTTCTCCAAAATCACATTTTAACCCTTAA
1 ACTTCTCCAAAATTACATTTTAACCCTCAA
* *
30645536 ACCTAT-TCCAAAATCA-AGTTTTGACACCT-AA
1 A-CT-TCTCCAAAATTACA-TTTTAAC-CCTCAA
* *
30645567 ACTT-TCCTCGAAATCACATTTTAACCC-CAA
1 ACTTCT-C-CAAAATTACATTTTAACCCTCAA
* * *
30645597 ACTTCTCTAAAATCACATTTTGACCCT-AA
1 ACTTCTCCAAAATTACATTTTAACCCTCAA
* *
30645626 A-TTTTCCAAAATTACATTTTAACCCTTAA
1 ACTTCTCCAAAATTACATTTTAACCCTCAA
* * ** *
30645655 ACTTTTTCTAAAATTATGTTTTAACCCCTGAA
1 AC-TTCTCCAAAATTACATTTTAA-CCCTCAA
30645687 ACTT
1 ACTT
30645691 TATTTTCAAC
Statistics
Matches: 252, Mismatches: 31, Indels: 37
0.79 0.10 0.12
Matches are distributed among these distances:
28 45 0.18
29 50 0.20
30 89 0.35
31 55 0.22
32 13 0.05
ACGTcount: A:0.36, C:0.27, G:0.03, T:0.35
Consensus pattern (30 bp):
ACTTCTCCAAAATTACATTTTAACCCTCAA
Found at i:30646933 original size:11 final size:11
Alignment explanation
Indices: 30646917--30646942 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30646907 ATTGTGTTTC
30646917 TTATTTTTCTA
1 TTATTTTTCTA
30646928 TTATTTTTCTA
1 TTATTTTTCTA
30646939 TTAT
1 TTAT
30646943 AGAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATTTTTCTA
Found at i:30647679 original size:22 final size:21
Alignment explanation
Indices: 30647654--30647700 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
30647644 TAATTATATA
*
30647654 TAAATACTAAAACTCTAAATCG
1 TAAATACTAAAA-TCTAAATCC
* *
30647676 TAAATATTAAAATTTAAATCC
1 TAAATACTAAAATCTAAATCC
30647697 TAAA
1 TAAA
30647701 CTCAAAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.32
Consensus pattern (21 bp):
TAAATACTAAAATCTAAATCC
Found at i:30647709 original size:35 final size:35
Alignment explanation
Indices: 30647654--30647729 Score: 91
Period size: 35 Copynumber: 2.1 Consensus size: 35
30647644 TAATTATATA
* * *
30647654 TAAATACTAAAACTCTAAATCGTAAATATTAAAATT
1 TAAATACTAAAACTCAAAATCATAAACATT-AAATT
*
30647690 TAAATCCT-AAACTCAAAATCATAAACATTAAATT
1 TAAATACTAAAACTCAAAATCATAAACATTAAATT
30647724 TGAAAT
1 T-AAAT
30647730 TTATTAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
34 6 0.17
35 22 0.63
36 7 0.20
ACGTcount: A:0.53, C:0.13, G:0.03, T:0.32
Consensus pattern (35 bp):
TAAATACTAAAACTCAAAATCATAAACATTAAATT
Found at i:30649607 original size:14 final size:14
Alignment explanation
Indices: 30649588--30649622 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
30649578 TGTTTGATTG
*
30649588 AAAATGGTTTCTGA
1 AAAATGATTTCTGA
*
30649602 AAAATGATTTCTGG
1 AAAATGATTTCTGA
30649616 AAAATGA
1 AAAATGA
30649623 ATTACTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (14 bp):
AAAATGATTTCTGA
Found at i:30650014 original size:12 final size:12
Alignment explanation
Indices: 30649997--30650022 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
30649987 AAATTAGTAG
30649997 TACACCACATGA
1 TACACCACATGA
30650009 TACACCACATGA
1 TACACCACATGA
30650021 TA
1 TA
30650023 ACTACAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.31, G:0.08, T:0.19
Consensus pattern (12 bp):
TACACCACATGA
Found at i:30660684 original size:22 final size:23
Alignment explanation
Indices: 30660654--30660698 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
30660644 TGATTAATTT
30660654 TATTATTATAATGT-AAAAATAAA
1 TATTATTAT-ATGTAAAAAATAAA
*
30660677 TATT-TTATATTTAAAAAATAAA
1 TATTATTATATGTAAAAAATAAA
30660699 AAAGTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 3 0.15
22 13 0.65
23 4 0.20
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (23 bp):
TATTATTATATGTAAAAAATAAA
Found at i:30660734 original size:26 final size:27
Alignment explanation
Indices: 30660704--30660759 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
30660694 ATAAAAAAGT
* *
30660704 TTAAAAAT-TCCATATAGAAA-TATTTA
1 TTAAAAATAT-CATATAAAAAGTATTGA
30660730 TTAAAAATATCATATAAAAAGTATTGA
1 TTAAAAATATCATATAAAAAGTATTGA
30660757 TTA
1 TTA
30660760 TTTTTTTCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (27 bp):
TTAAAAATATCATATAAAAAGTATTGA
Found at i:30663544 original size:24 final size:24
Alignment explanation
Indices: 30663511--30663556 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
30663501 TCACAAATGA
* * *
30663511 GAAAGGTAAGGCATGTATATATGT
1 GAAAGATAAGGCACGCATATATGT
30663535 GAAAGATAAGGCACGCATATAT
1 GAAAGATAAGGCACGCATATAT
30663557 ATATATATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.26, T:0.24
Consensus pattern (24 bp):
GAAAGATAAGGCACGCATATATGT
Found at i:30669061 original size:23 final size:24
Alignment explanation
Indices: 30669031--30669075 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
30669021 TTATTTAGGT
*
30669031 AAAAAACATTTAATAG-TATTTAA
1 AAAAAACACTTAATAGTTATTTAA
30669054 AAAAAACACTTAATAGTTATTT
1 AAAAAACACTTAATAGTTATTT
30669076 TTTATATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (24 bp):
AAAAAACACTTAATAGTTATTTAA
Found at i:30675310 original size:10 final size:9
Alignment explanation
Indices: 30675276--30675309 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
30675266 GTTCAACCGC
30675276 GGCACATAA
1 GGCACATAA
*
30675285 AGCACATAA
1 GGCACATAA
30675294 GGCACAATAA
1 GGCAC-ATAA
30675304 GGCACA
1 GGCACA
30675310 ACAGCCAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.47, C:0.24, G:0.21, T:0.09
Consensus pattern (9 bp):
GGCACATAA
Found at i:30689298 original size:14 final size:14
Alignment explanation
Indices: 30689279--30689308 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
30689269 CTTAAAGAAA
30689279 TTATTTACAACGAT
1 TTATTTACAACGAT
*
30689293 TTATTTACAATGAT
1 TTATTTACAACGAT
30689307 TT
1 TT
30689309 CGGGCCAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (14 bp):
TTATTTACAACGAT
Found at i:30689716 original size:487 final size:487
Alignment explanation
Indices: 30688803--30693136 Score: 8113
Period size: 487 Copynumber: 9.0 Consensus size: 487
30688793 TTCCATTTAA
30688803 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
1 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
30688868 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
66 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
*
30688933 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAAAGGTCAAGGCGTAGAT
131 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
30688998 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
196 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
30689063 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
261 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
30689128 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
326 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
*
30689193 GAAAACTATGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
391 GAAAACTGTGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
30689258 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
456 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
*
30689290 GATTTATTTACAATGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
1 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
30689355 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
66 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
*
30689420 ACTAAAGTAGGCCAAGTCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
131 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
*
30689485 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAAAG
196 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
30689550 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
261 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
30689615 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
326 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
*
30689680 GAAAACTATGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
391 GAAAACTGTGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
30689745 AAGTGAAAATTCTTAAAG-----------AA-
456 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
30689765 -A-TTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
1 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
30689828 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
66 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
*
30689893 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGATCAAGGCGTAGAT
131 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
30689958 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
196 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
*
30690023 GTGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
261 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
*
30690088 AGATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
326 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
*
30690153 GAAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
391 GAAAACTGTGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
30690218 AAGTGAAAATTCTTAAAG------------A-
456 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
30690237 -ATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
1 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
*
30690301 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGCGGATTAACAATGAAGCCTAAGGAAAACTT
66 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
*
30690366 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCATGGTAGAGGTCAAGGCGTAGAT
131 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
30690431 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
196 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
30690496 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
261 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
30690561 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
326 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
30690626 GAAAACTGTGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
391 GAAAACTGTGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
30690691 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
456 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
30690723 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
1 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
30690788 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
66 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
30690853 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
131 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
30690918 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
196 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
*
30690983 GTGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
261 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
*
30691048 AGATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
326 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
*
30691113 GAAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
391 GAAAACTGTGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
30691178 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
456 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
30691210 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
1 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
30691275 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
66 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
*
30691340 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAAAT
131 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
30691405 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
196 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
30691470 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
261 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
*
30691535 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCTA
326 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
*
30691600 GAAAACTATGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
391 GAAAACTGTGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
30691665 AAGTGAAAATTCTTAAAG------------A-
456 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
30691684 -ATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
1 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
30691748 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
66 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
30691813 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
131 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
30691878 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
196 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
*
30691943 GTGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
261 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
* *
30692008 AGATTTGAAGAGGTCGAGGTAGATTCTAACTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
326 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
*
30692073 GAAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
391 GAAAACTGTGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
30692138 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
456 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
30692170 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
1 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
30692235 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
66 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
30692300 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
131 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
30692365 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
196 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
30692430 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
261 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
30692495 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
326 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
*
30692560 GAAAACTATGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
391 GAAAACTGTGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
30692625 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
456 AAGTGAAAATTCTTAAAGAAATTATTTACAAC
* *
30692657 GATTTATTTACAATGATATCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
1 GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
30692722 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
66 TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
30692787 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
131 ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
30692852 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
196 AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
*
30692917 GTGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
261 GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
*
30692982 AGATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
326 AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
* *
30693047 GAAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCAAA
391 GAAAACTGTGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
30693112 AAGTGAAAATTCTTAAAGAAATTAT
456 AAGTGAAAATTCTTAAAGAAATTAT
30693137 CTAAGGCACT
Statistics
Matches: 3770, Mismatches: 48, Indels: 58
0.97 0.01 0.01
Matches are distributed among these distances:
472 2 0.00
473 1391 0.37
474 1 0.00
475 1 0.00
476 2 0.00
485 2 0.00
487 2371 0.63
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.28
Consensus pattern (487 bp):
GATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATG
TGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTT
ACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGAT
AAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAG
GTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTT
AGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCA
GAAAACTGTGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAA
AAGTGAAAATTCTTAAAGAAATTATTTACAAC
Found at i:30690731 original size:14 final size:14
Alignment explanation
Indices: 30690712--30690741 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
30690702 CTTAAAGAAA
30690712 TTATTTACAACGAT
1 TTATTTACAACGAT
30690726 TTATTTACAACGAT
1 TTATTTACAACGAT
30690740 TT
1 TT
30690742 CGGGCCAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (14 bp):
TTATTTACAACGAT
Found at i:30691218 original size:14 final size:14
Alignment explanation
Indices: 30691199--30691228 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
30691189 CTTAAAGAAA
30691199 TTATTTACAACGAT
1 TTATTTACAACGAT
30691213 TTATTTACAACGAT
1 TTATTTACAACGAT
30691227 TT
1 TT
30691229 CGGGCCAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (14 bp):
TTATTTACAACGAT
Found at i:30692178 original size:14 final size:14
Alignment explanation
Indices: 30692159--30692188 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
30692149 CTTAAAGAAA
30692159 TTATTTACAACGAT
1 TTATTTACAACGAT
30692173 TTATTTACAACGAT
1 TTATTTACAACGAT
30692187 TT
1 TT
30692189 CGGGCCAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (14 bp):
TTATTTACAACGAT
Found at i:30692179 original size:974 final size:960
Alignment explanation
Indices: 30688804--30693136 Score: 8154
Period size: 960 Copynumber: 4.5 Consensus size: 960
30688794 TCCATTTAAG
30688804 ATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATGT
1 ATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATGT
30688869 GCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTTA
66 GCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTTA
*
30688934 CTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAAAGGTCAAGGCGTAGATA
131 CTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGATA
30688999 AAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGG
196 AAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGG
*
30689064 TGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTTA
261 TGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTTA
*
30689129 GATTTGGAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCAG
326 GATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCAG
* *
30689194 AAAACTATGTGACTTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAAA
391 AAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAAA
*
30689259 AGTGAAAATTCTTAAAGAAATTATTTACAACGATTTATTTACAATGATTTCGGGCCAATGATAAC
456 AGTGAAAATTCTTAAAGAAATTATTTACAACGATTTATTTACAACGATTTCGGGCCAATGATAAC
30689324 CCATACTTGTATCAACTAGTATAAGCTCATGTGCATCGAATTAAACATCCAATTTTAGTTTATCA
521 CCATACTTGTATCAACTAGTATAAGCTCATGTGCATCGAATTAAACATCCAATTTTAGTTTATCA
*
30689389 GAGGATTAACAATGAAGCCTAAGGAAAACTTACTAAAGTAGGCCAAGTCGGAGGTGGGAAAATAT
586 GAGGATTAACAATGAAGCCTAAGGAAAACTTACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATAT
30689454 GTGACCTCAAGGTAGAGGTCAAGGCGTAGATAAAGCTATTGAAGTGAGCAACATGGTTGAGTTCA
651 GTGACCTCAAGGTAGAGGTCAAGGCGTAGATAAAGCTATTGAAGTGAGCAACATGGTTGAGTTCA
*
30689519 AGCTTGAGGCAAAGGAGGGTGCAAGGCAAAGGTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGA
716 AGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGGTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGA
30689584 TGCCATGGCTCTCATACTTGAAAAAGCTCTTAGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTG
781 TGCCATGGCTCTCATACTTGAAAAAGCTCTTAGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTG
30689649 CCTAATGTCATGAGGTTAGAACTTTAGTCCAGAAAACTATGTGACTTTAGGTGATTTCTTGGGTT
846 CCTAATGTCATGAGGTTAGAACTTTAGTCCAGAAAACTATGTGACTTTAGGTGATTTCTTGGGTT
30689714 CAAATCTTGCCTCAGTCAACCTACACTCGAAAAGTGAAAATTCTTAAAGA
911 CAAATCTTGCCTCAGTCAACCTACACTCGAAAAGTGAAAATTCTTAAAGA
*
30689764 AATTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATGT
1 ATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATGT
30689829 GCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTTA
66 GCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTTA
*
30689894 CTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGATCAAGGCGTAGATA
131 CTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGATA
30689959 AAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGG
196 AAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGG
30690024 TGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTTA
261 TGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTTA
30690089 GATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCAG
326 GATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCAG
30690154 AAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAAA
391 AAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAAA
30690219 AGTGAAAATTCTTAAAG------------A--ATTTATTTACAACGATTTCGGGCCAATGATAAC
456 AGTGAAAATTCTTAAAGAAATTATTTACAACGATTTATTTACAACGATTTCGGGCCAATGATAAC
30690270 CCATACTTGTATCAACTAGTATAAGCTCATGTGCATCGAATTAAACATCCAATTTTAGTTTATCA
521 CCATACTTGTATCAACTAGTATAAGCTCATGTGCATCGAATTAAACATCCAATTTTAGTTTATCA
*
30690335 GCGGATTAACAATGAAGCCTAAGGAAAACTTACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATAT
586 GAGGATTAACAATGAAGCCTAAGGAAAACTTACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATAT
*
30690400 GTGACCTCATGGTAGAGGTCAAGGCGTAGATAAAGCTATTGAAGTGAGCAACATGGTTGAGTTCA
651 GTGACCTCAAGGTAGAGGTCAAGGCGTAGATAAAGCTATTGAAGTGAGCAACATGGTTGAGTTCA
30690465 AGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGGTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGA
716 AGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGGTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGA
30690530 TGCCATGGCTCTCATACTTGAAAAAGCTCTTAGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTG
781 TGCCATGGCTCTCATACTTGAAAAAGCTCTTAGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTG
*
30690595 CCTAATGTCATGAGGTTAGAACTTTAGTCCAGAAAACTGTGTGACTTTAGGTGATTTCTTGGGTT
846 CCTAATGTCATGAGGTTAGAACTTTAGTCCAGAAAACTATGTGACTTTAGGTGATTTCTTGGGTT
30690660 CAAATCTTGCCTCAGTCAACCTACACTCGAAAAGTGAAAATTCTTAAAGAAATTATTTACAA
911 CAAATCTTGCCTCAGTCAACCTACACTCGAAAAGTGAAAATTCTTAAAG------------A
30690722 CGATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCAT
1 --ATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCAT
30690787 GTGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACT
64 GTGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACT
30690852 TACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGA
129 TACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGA
30690917 TAAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGA
194 TAAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGA
30690982 GGTGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCT
259 GGTGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCT
30691047 TAGATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCC
324 TAGATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCC
30691112 AGAAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGA
389 AGAAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGA
30691177 AAAGTGAAAATTCTTAAAGAAATTATTTACAACGATTTATTTACAACGATTTCGGGCCAATGATA
454 AAAGTGAAAATTCTTAAAGAAATTATTTACAACGATTTATTTACAACGATTTCGGGCCAATGATA
30691242 ACCCATACTTGTATCAACTAGTATAAGCTCATGTGCATCGAATTAAACATCCAATTTTAGTTTAT
519 ACCCATACTTGTATCAACTAGTATAAGCTCATGTGCATCGAATTAAACATCCAATTTTAGTTTAT
30691307 CAGAGGATTAACAATGAAGCCTAAGGAAAACTTACTAAAGTAGGCCAAGCCGGAGGTGGGAAAAT
584 CAGAGGATTAACAATGAAGCCTAAGGAAAACTTACTAAAGTAGGCCAAGCCGGAGGTGGGAAAAT
*
30691372 ATGTGACCTCAAGGTAGAGGTCAAGGCGTAAATAAAGCTATTGAAGTGAGCAACATGGTTGAGTT
649 ATGTGACCTCAAGGTAGAGGTCAAGGCGTAGATAAAGCTATTGAAGTGAGCAACATGGTTGAGTT
30691437 CAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGGTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAA
714 CAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGGTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAA
30691502 GATGCCATGGCTCTCATACTTGAAAAAGCTCTTAGATTTGGAGAGGTCGAGGTAGATTCTAGCTT
779 GATGCCATGGCTCTCATACTTGAAAAAGCTCTTAGATTTGGAGAGGTCGAGGTAGATTCTAGCTT
*
30691567 TGCCTAATGTCATGAGGTTAGAACTTTAGTCTAGAAAACTATGTGACTTTAGGTGATTTCTTGGG
844 TGCCTAATGTCATGAGGTTAGAACTTTAGTCCAGAAAACTATGTGACTTTAGGTGATTTCTTGGG
30691632 TTCAAATCTTGCCTCAGTCAACCTACACTCGAAAAGTGAAAATTCTTAAAGA
909 TTCAAATCTTGCCTCAGTCAACCTACACTCGAAAAGTGAAAATTCTTAAAGA
30691684 ATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATGT
1 ATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATGT
30691749 GCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTTA
66 GCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTTA
30691814 CTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGATA
131 CTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGATA
30691879 AAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGG
196 AAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGG
30691944 TGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTTA
261 TGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTTA
*
30692009 GATTTGAAGAGGTCGAGGTAGATTCTAACTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCAG
326 GATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCAG
30692074 AAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAAA
391 AAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAAA
30692139 AGTGAAAATTCTTAAAGAAATTATTTACAACGATTTATTTACAACGATTTCGGGCCAATGATAAC
456 AGTGAAAATTCTTAAAGAAATTATTTACAACGATTTATTTACAACGATTTCGGGCCAATGATAAC
30692204 CCATACTTGTATCAACTAGTATAAGCTCATGTGCATCGAATTAAACATCCAATTTTAGTTTATCA
521 CCATACTTGTATCAACTAGTATAAGCTCATGTGCATCGAATTAAACATCCAATTTTAGTTTATCA
30692269 GAGGATTAACAATGAAGCCTAAGGAAAACTTACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATAT
586 GAGGATTAACAATGAAGCCTAAGGAAAACTTACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATAT
30692334 GTGACCTCAAGGTAGAGGTCAAGGCGTAGATAAAGCTATTGAAGTGAGCAACATGGTTGAGTTCA
651 GTGACCTCAAGGTAGAGGTCAAGGCGTAGATAAAGCTATTGAAGTGAGCAACATGGTTGAGTTCA
30692399 AGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGGTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGA
716 AGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGGTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGA
30692464 TGCCATGGCTCTCATACTTGAAAAAGCTCTTAGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTG
781 TGCCATGGCTCTCATACTTGAAAAAGCTCTTAGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTG
30692529 CCTAATGTCATGAGGTTAGAACTTTAGTCCAGAAAACTATGTGACTTTAGGTGATTTCTTGGGTT
846 CCTAATGTCATGAGGTTAGAACTTTAGTCCAGAAAACTATGTGACTTTAGGTGATTTCTTGGGTT
30692594 CAAATCTTGCCTCAGTCAACCTACACTCGAAAAGTGAAAATTCTTAAAGA
911 CAAATCTTGCCTCAGTCAACCTACACTCGAAAAGTGAAAATTCTTAAAGA
*
30692644 AATTATTTACAACGATTTATTTACAATGATATCGGGCCAATGATAACCCATACTTGTATCAACTA
1 ATTTATTTACAACG-----------AT--T-TCGGGCCAATGATAACCCATACTTGTATCAACTA
30692709 GTATAAGCTCATGTGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGC
52 GTATAAGCTCATGTGCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGC
30692774 CTAAGGAAAACTTACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGG
117 CTAAGGAAAACTTACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGG
30692839 TCAAGGCGTAGATAAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGG
182 TCAAGGCGTAGATAAAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGG
30692904 GTGCAAGGCAGAGGTGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACT
247 GTGCAAGGCAGAGGTGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACT
30692969 TGAAAAAGCTCTTAGATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTA
312 TGAAAAAGCTCTTAGATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTA
30693034 GAACTTTAGTCCAGAAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCA
377 GAACTTTAGTCCAGAAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCA
*
30693099 ACCTACACTCAAAAAGTGAAAATTCTTAAAGAAATTAT
442 ACCTACACTCGAAAAGTGAAAATTCTTAAAGAAATTAT
30693137 CTAAGGCACT
Statistics
Matches: 3305, Mismatches: 26, Indels: 70
0.97 0.01 0.02
Matches are distributed among these distances:
946 466 0.14
948 1 0.00
958 1 0.00
960 1905 0.58
962 1 0.00
971 2 0.00
972 1 0.00
973 1 0.00
974 927 0.28
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.28
Consensus pattern (960 bp):
ATTTATTTACAACGATTTCGGGCCAATGATAACCCATACTTGTATCAACTAGTATAAGCTCATGT
GCATCGAATTAAACATCCAATTTTAGTTTATCAGAGGATTAACAATGAAGCCTAAGGAAAACTTA
CTAAAGTAGGCCAAGCCGGAGGTGGGAAAATATGTGACCTCAAGGTAGAGGTCAAGGCGTAGATA
AAGCTATTGAAGTGAGCAACATGGTTGAGTTCAAGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGG
TGAAGGTTAAAGGTGAAGCGTTGTTGTTGAAGATGCCATGGCTCTCATACTTGAAAAAGCTCTTA
GATTTGAAGAGGTCGAGGTAGATTCTAGCTTTGCCTAATGTCATGAGGTTAGAACTTTAGTCCAG
AAAACTGTGTGACCTTAGGTGATTTCTTGGGTTCAAATCTTGCCTCAGTCAACCTACACTCGAAA
AGTGAAAATTCTTAAAGAAATTATTTACAACGATTTATTTACAACGATTTCGGGCCAATGATAAC
CCATACTTGTATCAACTAGTATAAGCTCATGTGCATCGAATTAAACATCCAATTTTAGTTTATCA
GAGGATTAACAATGAAGCCTAAGGAAAACTTACTAAAGTAGGCCAAGCCGGAGGTGGGAAAATAT
GTGACCTCAAGGTAGAGGTCAAGGCGTAGATAAAGCTATTGAAGTGAGCAACATGGTTGAGTTCA
AGCTTGAGGCAAAGGAGGGTGCAAGGCAGAGGTGAAGGTCAAAGGTGAAGCGTTGTTGTTGAAGA
TGCCATGGCTCTCATACTTGAAAAAGCTCTTAGATTTGGAGAGGTCGAGGTAGATTCTAGCTTTG
CCTAATGTCATGAGGTTAGAACTTTAGTCCAGAAAACTATGTGACTTTAGGTGATTTCTTGGGTT
CAAATCTTGCCTCAGTCAACCTACACTCGAAAAGTGAAAATTCTTAAAGA
Found at i:30693489 original size:43 final size:43
Alignment explanation
Indices: 30693396--30693494 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 43
30693386 GGAAAAATGA
* * * *
30693396 TGCTATAGAACATGGTCTTTAGCGGCATTTTTCCCATAAACGC
1 TGCTAAAGAACATGGTCTTTAGCGGCACTTTCCCCACAAACGC
* * * **
30693439 CGTTAAAGAACATGGTCTTTAGCGGCGCTTTCCCCACAAGTGC
1 TGCTAAAGAACATGGTCTTTAGCGGCACTTTCCCCACAAACGC
30693482 TGCTAAAGAACAT
1 TGCTAAAGAACAT
30693495 AGCATCGTTA
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
TGCTAAAGAACATGGTCTTTAGCGGCACTTTCCCCACAAACGC
Found at i:30693548 original size:61 final size:61
Alignment explanation
Indices: 30693439--30693555 Score: 189
Period size: 61 Copynumber: 1.9 Consensus size: 61
30693429 CCATAAACGC
* * *
30693439 CGTTAAAGAACATGGTCTTTAGCGGCGCTTTCCCCACAAGTGCTGCTAAAGAACATAGCAT
1 CGTTAAAGAACATGGTCTTTAGCAGCGCTTTCCCCACAAATGCCGCTAAAGAACATAGCAT
* *
30693500 CGTTAAAGAACATGGTCTTTAGCAGCGCTTTCCCCACAAATTCCGCTAAATAACAT
1 CGTTAAAGAACATGGTCTTTAGCAGCGCTTTCCCCACAAATGCCGCTAAAGAACAT
30693556 GGTCTTTAGC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (61 bp):
CGTTAAAGAACATGGTCTTTAGCAGCGCTTTCCCCACAAATGCCGCTAAAGAACATAGCAT
Found at i:30693573 original size:43 final size:43
Alignment explanation
Indices: 30693503--30693849 Score: 405
Period size: 43 Copynumber: 8.1 Consensus size: 43
30693493 ATAGCATCGT
* **
30693503 TAAAGAACATGGTCTTTAGCAGCGCTTTCCCCACAAATTCCGC
1 TAAAGAACATGGTCTTTAGCGGCGCTTTCCCCACAAACGCCGC
* * * *
30693546 TAAATAACATGGTCTTTAGCGGGGCTTT-CCCACAAACGCAGT
1 TAAAGAACATGGTCTTTAGCGGCGCTTTCCCCACAAACGCCGC
*
30693588 TAAAGAACATGGTCTTTAGCAGCGCTTTCCCCACAAACGCCGC
1 TAAAGAACATGGTCTTTAGCGGCGCTTTCCCCACAAACGCCGC
* ** * *
30693631 TAAAGAACATGGTCTTTTGCAACGCTTTCTCAACAAACGCCGC
1 TAAAGAACATGGTCTTTAGCGGCGCTTTCCCCACAAACGCCGC
* * *
30693674 TAAAGAACATGGTCTTTAGCGGCGC-TTCTCCCATAAACACTGC
1 TAAAGAACATGGTCTTTAGCGGCGCTTTC-CCCACAAACGCCGC
**
30693717 TAAAGAACATGGTCTTTAGCGGCGC-TTCTCCCACAAACGCCAT
1 TAAAGAACATGGTCTTTAGCGGCGCTTTC-CCCACAAACGCCGC
* * * *
30693760 TAAAGAACATGATCTTTAGCGGTGC-TTCTACCACAAACGCTGC
1 TAAAGAACATGGTCTTTAGCGGCGCTTTC-CCCACAAACGCCGC
* * * *
30693803 TAAAGAACATGGTCTTTAGCGGTGCTTTTCACACAAACGTCGC
1 TAAAGAACATGGTCTTTAGCGGCGCTTTCCCCACAAACGCCGC
30693846 TAAA
1 TAAA
30693850 ATTAACAGAT
Statistics
Matches: 260, Mismatches: 41, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
42 38 0.15
43 220 0.85
44 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
TAAAGAACATGGTCTTTAGCGGCGCTTTCCCCACAAACGCCGC
Found at i:30694244 original size:66 final size:66
Alignment explanation
Indices: 30694119--30694255 Score: 161
Period size: 66 Copynumber: 2.1 Consensus size: 66
30694109 TCATATTTTG
* * *
30694119 AAGTTGTAGCTGAAGTTCGTCATACTTTCTTGTTGCCTCTACTTCCCTCGCTGCTGCCTCCGCTT
1 AAGTTATAGCTGAAGTTCATCATACTTTCTTGTTGCCTCTACTTCCCTCGCTGCAGCCTCCGCTT
30694184 T
66 T
* * * * * *
30694185 AAGTTATAGCTGGAGTTCATCATATTTTC-T-TTGAACCTCTGCTTCTCTCGTTGCAGCCTCCTC
1 AAGTTATAGCTGAAGTTCATCATACTTTCTTGTTG--CCTCTACTTCCCTCGCTGCAGCCTCCGC
30694248 TTT
64 TTT
30694251 AAGTT
1 AAGTT
30694256 GAGCAATTTG
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
64 3 0.05
65 1 0.02
66 56 0.93
ACGTcount: A:0.15, C:0.27, G:0.17, T:0.41
Consensus pattern (66 bp):
AAGTTATAGCTGAAGTTCATCATACTTTCTTGTTGCCTCTACTTCCCTCGCTGCAGCCTCCGCTT
T
Found at i:30696838 original size:41 final size:41
Alignment explanation
Indices: 30696720--30696843 Score: 133
Period size: 41 Copynumber: 3.0 Consensus size: 41
30696710 TTTAACGATG
* *
30696720 TTTTTCCCATAAACGCCGCTAATGTTCTGGACCTTTTGCGGCG
1 TTTTTCCCATAAACGCCGCTAATGTT-T-GACCTTTAGCGGCA
*** * * *
30696763 TTTTTGAGA-AAATGCTGCTAATGCTTTGATCTTTAGCGGCA
1 TTTTTCCCATAAACGCCGCTAATG-TTTGACCTTTAGCGGCA
*
30696804 TTTTTCCCATAAACGCCGCTAATGTTTTACCTTTAGCGGC
1 TTTTTCCCATAAACGCCGCTAATGTTTGACCTTTAGCGGC
30696844 GTTTATGGGA
Statistics
Matches: 64, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
41 31 0.48
42 25 0.39
43 8 0.12
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.37
Consensus pattern (41 bp):
TTTTTCCCATAAACGCCGCTAATGTTTGACCTTTAGCGGCA
Found at i:30698456 original size:42 final size:42
Alignment explanation
Indices: 30698389--30698505 Score: 139
Period size: 41 Copynumber: 2.8 Consensus size: 42
30698379 ATTTATGGGA
* *
30698389 AAACGCCGCTATTGCT-TAACCTTTAGCGGCGTTTTTTCCAT
1 AAACACCGCTATTGCTCTAACCTTTAGCGGCGTTTTTCCCAT
* * * *
30698430 AAATACCGCTATTACTCTGACCTTTAGCGGCG-CTTTCCCAT
1 AAACACCGCTATTGCTCTAACCTTTAGCGGCGTTTTTCCCAT
* * *
30698471 AAGCGCCGCTAATGCTCTAACCTTTAGCGGCGTTT
1 AAACACCGCTATTGCTCTAACCTTTAGCGGCGTTT
30698506 ATGTGGAAGC
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
41 46 0.75
42 15 0.25
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (42 bp):
AAACACCGCTATTGCTCTAACCTTTAGCGGCGTTTTTCCCAT
Found at i:30698516 original size:41 final size:41
Alignment explanation
Indices: 30698444--30698662 Score: 210
Period size: 41 Copynumber: 5.3 Consensus size: 41
30698434 ACCGCTATTA
* *** *
30698444 CTCTGACCTTTAGCGGCGCTT-TCCCATAAGCGCCGCTAATG
1 CTCTGACCTTTAGCGGCGTTTATGTGA-AAGCGCCACTAATG
* * *
30698485 CTCTAACCTTTAGCGGCGTTTATGTGGAAGCGCCACTAAAG
1 CTCTGACCTTTAGCGGCGTTTATGTGAAAGCGCCACTAATG
* * * * * *
30698526 CTCTGACATTTAGTGACGTTTATGTGAAAGAGTCGCTAATG
1 CTCTGACCTTTAGCGGCGTTTATGTGAAAGCGCCACTAATG
* *
30698567 CTCTGACCTTTAGCGGCATTTATGTGAAAGCACCACTAATG
1 CTCTGACCTTTAGCGGCGTTTATGTGAAAGCGCCACTAATG
* **
30698608 CTCTGACCTTTAGCGGTGCTTT-CCT-ATAAGCGCCACTAATG
1 CTCTGACCTTTAGCGGCG-TTTATGTGA-AAGCGCCACTAATG
*
30698649 CTTTGACCTTTAGC
1 CTCTGACCTTTAGC
30698663 TGCGCTTCCT
Statistics
Matches: 144, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
40 1 0.01
41 139 0.97
42 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (41 bp):
CTCTGACCTTTAGCGGCGTTTATGTGAAAGCGCCACTAATG
Found at i:30698538 original size:82 final size:82
Alignment explanation
Indices: 30698444--30698743 Score: 273
Period size: 82 Copynumber: 3.7 Consensus size: 82
30698434 ACCGCTATTA
* *
30698444 CTCTGACCTTTAGCGGCGCTTTCCCATAAGCGCCGCTAATGCTCTAACCTTTAGCGGCGTTTATG
1 CTCTGACATTTAGCGGCGCTTTCCCATAAGCGCCGCTAATGCTCTGACCTTTAGCGGCGTTTATG
*
30698509 TGGAAGCGCCACTAAAG
66 TGAAAGCGCCACTAAAG
* * * *** * * *
30698526 CTCTGACATTTAGTGACGTTTATGTGA-AAGAGTCGCTAATGCTCTGACCTTTAGCGGCATTTAT
1 CTCTGACATTTAGCGGCGCTT-TCCCATAAGCGCCGCTAATGCTCTGACCTTTAGCGGCGTTTAT
* *
30698590 GTGAAAGCACCACTAATG
65 GTGAAAGCGCCACTAAAG
* * * * * * **
30698608 CTCTGACCTTTAGCGGTGCTTTCCTATAAGCGCCACTAATGCTTTGACCTTTAGCTGCGCTTCCT
1 CTCTGACATTTAGCGGCGCTTTCCCATAAGCGCCGCTAATGCTCTGACCTTTAGCGGCG-TTTAT
** * *
30698673 -CAAAAACGCCGCTAAAG
65 GTGAAAGCGCCACTAAAG
* * * * *
30698690 GTCAGA-ATATTAACGGCGTTTTCCCATAAGCGCCGCTAATGCTCTGACTTTTAG
1 CTCTGACAT-TTAGCGGCGCTTTCCCATAAGCGCCGCTAATGCTCTGACCTTTAG
30698744 TGGCCTTTTT
Statistics
Matches: 168, Mismatches: 46, Indels: 8
0.76 0.21 0.04
Matches are distributed among these distances:
81 3 0.02
82 160 0.95
83 5 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (82 bp):
CTCTGACATTTAGCGGCGCTTTCCCATAAGCGCCGCTAATGCTCTGACCTTTAGCGGCGTTTATG
TGAAAGCGCCACTAAAG
Found at i:30705503 original size:26 final size:26
Alignment explanation
Indices: 30705441--30705503 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
30705431 CAACACCCCT
* *
30705441 AACCTAAATAAAAACTCAACACATAA
1 AACCCAAAAAAAAACTCAACACATAA
* *
30705467 AACCCAAAAAAAAACTCAATACCTTAA
1 AACCCAAAAAAAAACTCAACA-CATAA
*
30705494 AACCCGAAAA
1 AACCCAAAAA
30705504 CCCAAATCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
26 18 0.58
27 13 0.42
ACGTcount: A:0.60, C:0.25, G:0.02, T:0.13
Consensus pattern (26 bp):
AACCCAAAAAAAAACTCAACACATAA
Found at i:30724116 original size:14 final size:15
Alignment explanation
Indices: 30724097--30724132 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
30724087 ATAATAGGTT
30724097 TTTAATTAAAT-AAA
1 TTTAATTAAATGAAA
*
30724111 TTTAATTAATTGAAA
1 TTTAATTAAATGAAA
30724126 TTTAATT
1 TTTAATT
30724133 TATTTACACC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
TTTAATTAAATGAAA
Found at i:30724599 original size:24 final size:23
Alignment explanation
Indices: 30724567--30724612 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
30724557 GATGTCTATT
*
30724567 TTTTATATATTTAATATTTAATA
1 TTTTATATATTGAATATTTAATA
*
30724590 TTTTATTATATTGATTATTTAAT
1 TTTTA-TATATTGAATATTTAAT
30724613 TTTATTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (23 bp):
TTTTATATATTGAATATTTAATA
Found at i:30724617 original size:22 final size:24
Alignment explanation
Indices: 30724567--30724624 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
30724557 GATGTCTATT
*
30724567 TTTTA-TATATTTAATATTTAATA
1 TTTTATTATATTGAATATTTAATA
*
30724590 TTTTATTATATTGATTATTT-A-A
1 TTTTATTATATTGAATATTTAATA
*
30724612 TTTTATTTTATTG
1 TTTTATTATATTG
30724625 GTGAGTTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 13 0.42
23 6 0.19
24 12 0.39
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (24 bp):
TTTTATTATATTGAATATTTAATA
Found at i:30724622 original size:24 final size:23
Alignment explanation
Indices: 30724564--30724622 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
30724554 TAAGATGTCT
* *
30724564 ATTTTTTATATATTTAATATTTA
1 ATTTTTTTTATATTGAATATTTA
* *
30724587 ATATTTTATTATATTGATTATTTA
1 AT-TTTTTTTATATTGAATATTTA
30724611 ATTTTATTTTAT
1 ATTTT-TTTTAT
30724623 TGGTGAGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
ATTTTTTTTATATTGAATATTTA
Found at i:30733841 original size:23 final size:23
Alignment explanation
Indices: 30733815--30733898 Score: 65
Period size: 23 Copynumber: 3.8 Consensus size: 23
30733805 ATATTAAAAT
*
30733815 TTAAATACTTTTTTATAATTTTA
1 TTAAATATTTTTTTATAATTTTA
* *
30733838 TTAAAAATTATTTTTA-AACCTTTA
1 TTAAATATT-TTTTTATAA-TTTTA
30733862 --AAATAATTTTTTTATAA-TTT-
1 TTAAAT-ATTTTTTTATAATTTTA
30733882 TTAAA-A-TTTTTTATAAT
1 TTAAATATTTTTTTATAAT
30733899 AATATTATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 17
0.70 0.06 0.24
Matches are distributed among these distances:
19 10 0.20
20 1 0.02
21 3 0.06
22 12 0.24
23 14 0.28
24 10 0.20
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (23 bp):
TTAAATATTTTTTTATAATTTTA
Found at i:30742233 original size:16 final size:16
Alignment explanation
Indices: 30742200--30742246 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
30742190 TAGAGTAGAA
*
30742200 AGAAAATTGAAAGAAT
1 AGAAAATTGAAGGAAT
* *
30742216 AGATAATTGAAGGGAT
1 AGAAAATTGAAGGAAT
30742232 AGAAAATTAGAAGGA
1 AGAAAATT-GAAGGA
30742247 TGAAAATATA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 20 0.80
17 5 0.20
ACGTcount: A:0.55, C:0.00, G:0.26, T:0.19
Consensus pattern (16 bp):
AGAAAATTGAAGGAAT
Found at i:30742247 original size:16 final size:15
Alignment explanation
Indices: 30742200--30742253 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
30742190 TAGAGTAGAA
*
30742200 AGAAAATTGAAAGAAT
1 AGAAAATTG-AAGGAT
*
30742216 AGATAATTGAAGGGAT
1 AGAAAATTGAA-GGAT
30742232 AGAAAATTAGAAGGAT
1 AGAAAATT-GAAGGAT
30742248 -GAAAAT
1 AGAAAAT
30742254 ATAAATTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
15 8 0.24
16 22 0.67
17 3 0.09
ACGTcount: A:0.56, C:0.00, G:0.24, T:0.20
Consensus pattern (15 bp):
AGAAAATTGAAGGAT
Found at i:30743191 original size:34 final size:34
Alignment explanation
Indices: 30743148--30743216 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
30743138 AACACAATAT
*
30743148 TTTCTATTCAACTTTCCAATAACCTGACATCTCA
1 TTTCTATTCAACTTTCCAATAACATGACATCTCA
**
30743182 TTTCTATTCAGTTTTCCAATAACATGACATCTCA
1 TTTCTATTCAACTTTCCAATAACATGACATCTCA
30743216 T
1 T
30743217 GCTTTCGTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.29, C:0.26, G:0.04, T:0.41
Consensus pattern (34 bp):
TTTCTATTCAACTTTCCAATAACATGACATCTCA
Found at i:30744325 original size:17 final size:17
Alignment explanation
Indices: 30744303--30744376 Score: 78
Period size: 17 Copynumber: 4.4 Consensus size: 17
30744293 ACCCATTTTT
*
30744303 AATTTATTTTAAGTTTG
1 AATTTATTTTAAGTTTA
***
30744320 AATTTAGCATAAGTTTA
1 AATTTATTTTAAGTTTA
30744337 AATTTATTTTGAA-TTTA
1 AATTTATTTT-AAGTTTA
* *
30744354 AATTCATTTTAAATTTA
1 AATTTATTTTAAGTTTA
30744371 AATTTA
1 AATTTA
30744377 ATTAAAAATT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
16 2 0.04
17 42 0.91
18 2 0.04
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (17 bp):
AATTTATTTTAAGTTTA
Found at i:30745028 original size:19 final size:21
Alignment explanation
Indices: 30744985--30745031 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 21
30744975 TTTTAATATG
30744985 TATTAATATATTTAATATTTACT
1 TATT-ATATATTTAATA-TTACT
30745008 TATTATATA-TTAATA-TACT
1 TATTATATATTTAATATTACT
30745027 TATTA
1 TATTA
30745032 ATTGCTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.38
21 6 0.25
22 5 0.21
23 4 0.17
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTATATATTTAATATTACT
Found at i:30746216 original size:29 final size:28
Alignment explanation
Indices: 30746142--30746539 Score: 240
Period size: 29 Copynumber: 13.7 Consensus size: 28
30746132 TTAAACTATC
* * *
30746142 CAAAAATTACATTTTGACCCCTAAACTTTT
1 CAAAAATTACATTTT--TCCCTGAACTTCT
* *
30746172 CCAAAATTACATTTTTATCCCTAAACTTCT
1 CAAAAATTACA-TTTT-TCCCTGAACTTCT
* *
30746202 CAAAAATTACATTTTACCCCCGAACTTC-
1 CAAAAATTACATTTT-TCCCTGAACTTCT
*
30746230 C-TAAATTACATTTTTACCCTCGAACTT-T
1 CAAAAATTACATTTTT-CCCT-GAACTTCT
* * *
30746258 TAAAAATCATATTTTTACCCTCGAACTT-T
1 CAAAAATTACATTTTT-CCCT-GAACTTCT
* * *
30746287 TAAAAATCACATTTTAACCCCTGAACTTCT
1 CAAAAATTACATTTT--TCCCTGAACTTCT
30746317 CAAAAATTACATTTTTGCCCTCGAACTTCT
1 CAAAAATTACATTTTT-CCCT-GAACTTCT
*
30746347 -AAAAACTT-CATTTTCCCCTTGAACTTC-
1 CAAAAA-TTACATTTTTCCC-TGAACTTCT
30746374 CAAAAATTACATTTTTGCCCTCGAACTT-T
1 CAAAAATTACATTTTT-CCCT-GAACTTCT
* * *
30746403 TAAAAATCACATTTTAACTCCTGAACTTCT
1 CAAAAATTACATTTT-TC-CCTGAACTTCT
* * *
30746433 CAAAAATTACTTTTTTACCTTCAAACTT-T
1 CAAAAATTACATTTTT-CCCT-GAACTTCT
* * * *
30746462 CAAAAATTATATTTTACCCTCG-ATTTTT
1 CAAAAATTACATTTTTCCCT-GAACTTCT
* * *
30746490 CAAAAATTACATTTTTACCCTAAATTTTT
1 CAAAAATTACATTTTT-CCCTGAACTTCT
* *
30746519 CTAAAATAACATTTTTACCCT
1 CAAAAATTACATTTTT-CCCT
30746540 TAAAACTTTT
Statistics
Matches: 302, Mismatches: 41, Indels: 51
0.77 0.10 0.13
Matches are distributed among these distances:
27 20 0.07
28 48 0.16
29 148 0.49
30 82 0.27
31 4 0.01
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (28 bp):
CAAAAATTACATTTTTCCCTGAACTTCT
Found at i:30746274 original size:57 final size:57
Alignment explanation
Indices: 30746133--30746350 Score: 172
Period size: 59 Copynumber: 3.7 Consensus size: 57
30746123 AAAAGGTCCT
* **
30746133 TAAACTATC-CAAAAATTACATTTTGACCCCTAAACTTTTCCAAAATTACATTTTTATCCC
1 TAAACT-TCTCAAAAATCACATTTT-ACCCCCGAAC--TTCCAAAATTACATTTTTATCCC
* *
30746193 TAAACTTCTCAAAAATTACATTTTACCCCCGAACTTCCTAAATTACATTTTTA-CCC
1 TAAACTTCTCAAAAATCACATTTTACCCCCGAACTTCCAAAATTACATTTTTATCCC
* * * * ** * * *
30746249 TCGAACTT-TTAAAAATCATATTTTTACCCTCGAACTTTTAAAAATCACATTTTAACCCC
1 T-AAACTTCTCAAAAATCACA-TTTTACCCCCGAAC-TTCCAAAATTACATTTTTATCCC
* * * * *
30746308 TGAACTTCTCAAAAATTACATTTTTGCCCTCGAACTTCTAAAA
1 TAAACTTCTCAAAAATCACA-TTTTACCCCCGAACTTCCAAAA
30746351 ACTTCATTTT
Statistics
Matches: 133, Mismatches: 19, Indels: 14
0.80 0.11 0.08
Matches are distributed among these distances:
56 13 0.10
57 36 0.27
58 26 0.20
59 37 0.28
60 21 0.16
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.36
Consensus pattern (57 bp):
TAAACTTCTCAAAAATCACATTTTACCCCCGAACTTCCAAAATTACATTTTTATCCC
Found at i:30746323 original size:145 final size:146
Alignment explanation
Indices: 30746142--30746509 Score: 421
Period size: 145 Copynumber: 2.5 Consensus size: 146
30746132 TTAAACTATC
* *
30746142 CAAAAATTACATTTTGACCCCTAAACTTTTCCAAAATTACATTTTTATCCCTAAACTTCTCAAAA
1 CAAAAATTACATTTTAACCCCTAAAC-TTTCAAAAATTACATTTTTA-CCCTAAACTTCTCAAAA
* *
30746207 ATTACATTTTACCCC-CGAACTTCC-TAAATTACATTTTTACCCTCGAACTTTTAAAAATCATAT
64 ATTACATTTTACCCCTCGAACTTCCAAAAATTACATTTTTACCCTCGAACTTTTAAAAATCACAT
*
30746270 TTTTAC-CCTCGAACTT-T
129 TTTAACTCCT-GAACTTCT
* * * * *
30746287 TAAAAATCACATTTTAACCCCTGAACTTCTCAAAAATTACATTTTTGCCCTCGAACTTCT-AAAA
1 CAAAAATTACATTTTAACCCCTAAACTT-TCAAAAATTACATTTTTACCCT-AAACTTCTCAAAA
* *
30746351 ACTT-CATTTT-CCCCTTGAACTTCCAAAAATTACATTTTTGCCCTCGAACTTTTAAAAATCACA
64 A-TTACATTTTACCCCTCGAACTTCCAAAAATTACATTTTTACCCTCGAACTTTTAAAAATCACA
30746414 TTTTAACTCCTGAACTTCT
128 TTTTAACTCCTGAACTTCT
* * * * ** * *
30746433 CAAAAATTACTTTTTTA-CCTTCAAACTTTCAAAAATTATA-TTTTACCCTCGATTTTTCAAAAA
1 CAAAAATTACATTTTAACCCCT-AAACTTTCAAAAATTACATTTTTACCCTAAACTTCTCAAAAA
30746496 TTACATTTTTACCC
65 TTACA-TTTTACCC
30746510 TAAATTTTTC
Statistics
Matches: 187, Mismatches: 24, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
143 10 0.05
144 40 0.21
145 112 0.60
146 25 0.13
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (146 bp):
CAAAAATTACATTTTAACCCCTAAACTTTCAAAAATTACATTTTTACCCTAAACTTCTCAAAAAT
TACATTTTACCCCTCGAACTTCCAAAAATTACATTTTTACCCTCGAACTTTTAAAAATCACATTT
TAACTCCTGAACTTCT
Found at i:30746391 original size:57 final size:57
Alignment explanation
Indices: 30746195--30746510 Score: 272
Period size: 57 Copynumber: 5.5 Consensus size: 57
30746185 TTTATCCCTA
* * *
30746195 AACTTCTCAAAAATTACA-TTTTACCCCCGAACTTCCT--AAATTACATTTTTACCCTCG
1 AACTTCTCAAAAATTACATTTTTACCCTCGAACTT-CTAAAAATT-CA-TTTTCCCCTTG
* * * * *
30746252 AACTT-TTAAAAATCATATTTTTACCCTCGAACTTTTAAAAATCACATTTTAACCCC-TG
1 AACTTCTCAAAAATTACATTTTTACCCTCGAACTTCTAAAAAT-TCATTTT--CCCCTTG
*
30746310 AACTTCTCAAAAATTACATTTTTGCCCTCGAACTTCTAAAAACTTCATTTTCCCCTTG
1 AACTTCTCAAAAATTACATTTTTACCCTCGAACTTCTAAAAA-TTCATTTTCCCCTTG
* * * *
30746368 AACTTC-CAAAAATTACATTTTTGCCCTCGAACTTTTAAAAATCACATTTTAACTCC-TG
1 AACTTCTCAAAAATTACATTTTTACCCTCGAACTTCTAAAAAT-TCATTTT--CCCCTTG
* * * * * *
30746426 AACTTCTCAAAAATTACTTTTTTACCTTCAAACTT-TCAAAAATTATATTTTACCCTCG
1 AACTTCTCAAAAATTACATTTTTACCCTCGAACTTCT-AAAAATT-CATTTTCCCCTTG
* *
30746484 -ATTTTTCAAAAATTACATTTTTACCCT
1 AACTTCTCAAAAATTACATTTTTACCCT
30746511 AAATTTTTCT
Statistics
Matches: 213, Mismatches: 30, Indels: 32
0.77 0.11 0.12
Matches are distributed among these distances:
56 11 0.05
57 93 0.44
58 30 0.14
59 78 0.37
60 1 0.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.39
Consensus pattern (57 bp):
AACTTCTCAAAAATTACATTTTTACCCTCGAACTTCTAAAAATTCATTTTCCCCTTG
Found at i:30746396 original size:116 final size:116
Alignment explanation
Indices: 30746135--30746510 Score: 431
Period size: 116 Copynumber: 3.2 Consensus size: 116
30746125 AAGGTCCTTA
* * * * * * *
30746135 AACTATCCAAAAATTACATTTTGACCC-CTAAACTTTTCCAAAATTACATTTTTATCCCTAAACT
1 AACT-TCCAAAAATTACATTTTTACCCTC-GAACTTTT-AAAAATCACATTTTAACCCCTGAACT
*
30746199 TCTCAAAAATTACA-TTTTACCCCCGAACTTCCT--AAATTACATTTTTACCCTCG
63 TCTCAAAAATTACATTTTTACCCTCGAACTT-CTAAAAATTACA-TTTTACCCTCG
** * *
30746252 AACTTTTAAAAATCATATTTTTACCCTCGAACTTTTAAAAATCACATTTTAACCCCTGAACTTCT
1 AACTTCCAAAAATTACATTTTTACCCTCGAACTTTTAAAAATCACATTTTAACCCCTGAACTTCT
* * *
30746317 CAAAAATTACATTTTTGCCCTCGAACTTCTAAAAACTT-CATTTTCCCCTTG
66 CAAAAATTACATTTTTACCCTCGAACTTCTAAAAA-TTACATTTTACCCTCG
* *
30746368 AACTTCCAAAAATTACATTTTTGCCCTCGAACTTTTAAAAATCACATTTTAACTCCTGAACTTCT
1 AACTTCCAAAAATTACATTTTTACCCTCGAACTTTTAAAAATCACATTTTAACCCCTGAACTTCT
* * * *
30746433 CAAAAATTACTTTTTTACCTTCAAACTT-TCAAAAATTATATTTTACCCTCG
66 CAAAAATTACATTTTTACCCTCGAACTTCT-AAAAATTACATTTTACCCTCG
** *
30746484 ATTTTTCAAAAATTACATTTTTACCCT
1 AACTTCCAAAAATTACATTTTTACCCT
30746511 AAATTTTTCT
Statistics
Matches: 220, Mismatches: 32, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
115 40 0.18
116 168 0.76
117 10 0.05
118 2 0.01
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (116 bp):
AACTTCCAAAAATTACATTTTTACCCTCGAACTTTTAAAAATCACATTTTAACCCCTGAACTTCT
CAAAAATTACATTTTTACCCTCGAACTTCTAAAAATTACATTTTACCCTCG
Found at i:30746687 original size:28 final size:28
Alignment explanation
Indices: 30746656--30746720 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
30746646 TTAAAAATTA
*
30746656 ATTTTGTATTTTCTCAT-TTTTTTTTCAT
1 ATTTTGT-TTTTCTCATATTTATTTTCAT
* *
30746684 ATTTTATTTTTCTCATATTTATTTTCGT
1 ATTTTGTTTTTCTCATATTTATTTTCAT
30746712 ATATTTGTT
1 AT-TTTGTT
30746721 CATTTTTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 9 0.29
28 17 0.55
29 5 0.16
ACGTcount: A:0.17, C:0.09, G:0.05, T:0.69
Consensus pattern (28 bp):
ATTTTGTTTTTCTCATATTTATTTTCAT
Found at i:30746695 original size:14 final size:14
Alignment explanation
Indices: 30746664--30746708 Score: 58
Period size: 13 Copynumber: 3.2 Consensus size: 14
30746654 TAATTTTGTA
30746664 TTTTCTCATTTT-T
1 TTTTCTCATTTTAT
30746677 TTTTCAT-ATTTTAT
1 TTTTC-TCATTTTAT
30746691 TTTTCTCATATTTAT
1 TTTTCTCAT-TTTAT
30746706 TTT
1 TTT
30746709 CGTATATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 11 0.39
14 9 0.32
15 8 0.29
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTCTCATTTTAT
Found at i:30746709 original size:14 final size:14
Alignment explanation
Indices: 30746662--30746709 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 14
30746652 ATTAATTTTG
30746662 TATTTTCTCAT-TT
1 TATTTTCTCATATT
30746675 T-TTTT-TCATATTT
1 TATTTTCTCATA-TT
30746688 TATTTTTCTCATATT
1 TA-TTTTCTCATATT
30746703 TATTTTC
1 TATTTTC
30746710 GTATATTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
11 4 0.13
12 4 0.13
13 4 0.13
14 5 0.17
15 8 0.27
16 5 0.17
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.71
Consensus pattern (14 bp):
TATTTTCTCATATT
Found at i:30747016 original size:97 final size:97
Alignment explanation
Indices: 30746840--30747033 Score: 298
Period size: 97 Copynumber: 2.0 Consensus size: 97
30746830 AAAATATTTA
* * * * *
30746840 AAATCGAGGCAATATTCCTTTATTTTGGATTTTGAAAATTCGTGCCTTAACTTACTAGGCGTGAT
1 AAATCGAGGCAATATTACTTTATCTCGGATTTTGAAAATTCGTGACTTAACTTACTAGGCGCGAT
30746905 TTTTCTTCAAATCGGGATAATCGAATACCCTT
66 TTTTCTTCAAATCGGGATAATCGAATACCCTT
* * * *
30746937 AAATTGAGGTAATATTACTTTATCTCGGGTTTTGAAAATTTGTGACTTAACTTACTAGGCGCGAT
1 AAATCGAGGCAATATTACTTTATCTCGGATTTTGAAAATTCGTGACTTAACTTACTAGGCGCGAT
*
30747002 TTTTTTTCAAATCGGGATAATCGAATACCCTT
66 TTTTCTTCAAATCGGGATAATCGAATACCCTT
30747034 TTTCAAGGTT
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
97 87 1.00
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (97 bp):
AAATCGAGGCAATATTACTTTATCTCGGATTTTGAAAATTCGTGACTTAACTTACTAGGCGCGAT
TTTTCTTCAAATCGGGATAATCGAATACCCTT
Found at i:30758759 original size:78 final size:77
Alignment explanation
Indices: 30758626--30759420 Score: 832
Period size: 78 Copynumber: 10.2 Consensus size: 77
30758616 TTCAGAAGGA
* * * * * * * * * *
30758626 CAGATTGAAGCCATCCTATCTTTTACTCTGAGCATGGGGCAGATCATTATTAGCAAATCTCTTAC
1 CAGATTGCAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCAGC-AATCTCTTAC
**
30758691 CCCGATTCTGGGG
65 CCCGAGCCTGGGG
* *
30758704 TAGATTACAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCAGCAAATCTCTTAC
1 CAGATTGCAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCAGC-AATCTCTTAC
*
30758769 CCCGAGCTTGGGG
65 CCCGAGCCTGGGG
** * * * *
30758782 CAGATTGCAATCATTTGATCTCTTACCCCGAGCCTGGGGTAGATCATCATCAGGAAATCTCTTAC
1 CAGATTGCAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCA-GCAATCTCTTAC
*
30758847 CCCGAGCCTTGGG
65 CCCGAGCCTGGGG
* * * * * * * * *
30758860 TAGATTGCCA-CCAATCAATCTCTTGCCTCGAGCATGGGGCAGATAATCATCAACCAATCTCTTA
1 CAGATTG-CAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATC-AGCAATCTCTTA
*
30758924 TCCCGAGCCTGGGG
64 CCCCGAGCCTGGGG
* * * * *
30758938 CAGATTGTAGCCATTCAATCTTTTACCTCGAGCCT-GAGGCAGATCACCATCAGCCAATCTCTTA
1 CAGATTGCAGCCATTCGATCTCTTACCCCGAGCCTAG-GGCAGATCATCATCAG-CAATCTCTTA
30759002 -CCCGAGCCTGGGG
64 CCCCGAGCCTGGGG
* * * *
30759015 CAGATTGTAGTCATTCGATCTCTTACCCCTAGCCTAGGGCAGATCATCACCAGTCAATCTCTTAC
1 CAGATTGCAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCAG-CAATCTCTTAC
*
30759080 CCCGAGCTTGGGG
65 CCCGAGCCTGGGG
* * *
30759093 CAGATTGCAGCCATTCGATCTTTTACCCCGAGCCT-GAGGCAAATCATCACCAGTCAATCTCTTA
1 CAGATTGCAGCCATTCGATCTCTTACCCCGAGCCTAG-GGCAGATCATCATCAG-CAATCTCTTA
*
30759157 CCCCGAGCTTGGGG
64 CCCCGAGCCTGGGG
* * * * *
30759171 TAAATTACAGCCATTCGATCTCTTACCCCGAGCCTA-GGCAGATCATCACCAATCAATCTCTTAC
1 CAGATTGCAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATC-AGCAATCTCTTAC
*
30759235 CCCGAGCCTTGGGT
65 CCCGAGCC-TGGGG
** * * *
30759249 C-GATTGCAGCCATTCGATCTCTTACCTTGAG-CTTGAGGCAAATCATCACCAGTCAATCTCTTA
1 CAGATTGCAGCCATTCGATCTCTTACCCCGAGCCTAG-GGCAGATCATCATCAG-CAATCTCTTA
30759312 CCCCGAGCCTGGGG
64 CCCCGAGCCTGGGG
* *
30759326 CAGATTACAGCCATTCGATCTCTTA-CCCGAGCCTGGGGCAGATCATCATCAGTCAATCTCTTAC
1 CAGATTGCAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCAG-CAATCTCTTAC
* * *
30759390 CCCGATCATGGGA
65 CCCGAGCCTGGGG
*
30759403 CAGATTGCAGTCATTCGA
1 CAGATTGCAGCCATTCGA
30759421 AGACGAGATG
Statistics
Matches: 610, Mismatches: 90, Indels: 35
0.83 0.12 0.05
Matches are distributed among these distances:
76 2 0.00
77 190 0.31
78 414 0.68
79 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (77 bp):
CAGATTGCAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCAGCAATCTCTTACC
CCGAGCCTGGGG
Found at i:30759092 original size:155 final size:156
Alignment explanation
Indices: 30758626--30759420 Score: 947
Period size: 155 Copynumber: 5.1 Consensus size: 156
30758616 TTCAGAAGGA
* * * * * * * *
30758626 CAGATTGAAGCCATCCTATCTTTTA-CTCTGAGCATGGGGCAGATCATTATTAGCAAATCTCTTA
1 CAGATTGCAGCCATTCGATCTTTTACCTC-GAGCCTGAGGCAGATCATCATCAGCCAATCTCTTA
**
30758690 CCCCGATTCTGGGGTAGATTACAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATC
65 CCCCGAGCCTGGGGTAGATTACAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATC
30758755 AG-CAAATCTCTTACCCCGAGCTTGGGG
130 AGTC-AATCTCTTACCCCGAGCTTGGGG
** * * * * * **
30758782 CAGATTGCAATCATTTGATCTCTTACCCCGAGCCTGGGGTAGATCATCATCAGGAAATCTCTTAC
1 CAGATTGCAGCCATTCGATCTTTTACCTCGAGCCTGAGGCAGATCATCATCAGCCAATCTCTTAC
* * * * * * * * *
30758847 CCCGAGCCTTGGGTAGATTGCCA-CCAATCAATCTCTTGCCTCGAGCATGGGGCAGATAATCATC
66 CCCGAGCCTGGGGTAGATT-ACAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATC
** * *
30758911 AACCAATCTCTTATCCCGAGCCTGGGG
130 AGTCAATCTCTTACCCCGAGCTTGGGG
* * *
30758938 CAGATTGTAGCCATTCAATCTTTTACCTCGAGCCTGAGGCAGATCACCATCAGCCAATCTCTTA-
1 CAGATTGCAGCCATTCGATCTTTTACCTCGAGCCTGAGGCAGATCATCATCAGCCAATCTCTTAC
* ** * * *
30759002 CCCGAGCCTGGGGCAGATTGTAGTCATTCGATCTCTTACCCCTAGCCTAGGGCAGATCATCACCA
66 CCCGAGCCTGGGGTAGATTACAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCA
30759067 GTCAATCTCTTACCCCGAGCTTGGGG
131 GTCAATCTCTTACCCCGAGCTTGGGG
* * * *
30759093 CAGATTGCAGCCATTCGATCTTTTACCCCGAGCCTGAGGCAAATCATCACCAGTCAATCTCTTAC
1 CAGATTGCAGCCATTCGATCTTTTACCTCGAGCCTGAGGCAGATCATCATCAGCCAATCTCTTAC
* * *
30759158 CCCGAGCTTGGGGTAAATTACAGCCATTCGATCTCTTACCCCGAGCCTA-GGCAGATCATCACCA
66 CCCGAGCCTGGGGTAGATTACAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCA
* *
30759222 ATCAATCTCTTACCCCGAGCCTTGGGT
131 GTCAATCTCTTACCCCGAG-CTTGGGG
* * * * * *
30759249 C-GATTGCAGCCATTCGATCTCTTACCTTGAGCTTGAGGCAAATCATCACCAGTCAATCTCTTAC
1 CAGATTGCAGCCATTCGATCTTTTACCTCGAGCCTGAGGCAGATCATCATCAGCCAATCTCTTAC
* *
30759313 CCCGAGCCTGGGGCAGATTACAGCCATTCGATCTCTTA-CCCGAGCCTGGGGCAGATCATCATCA
66 CCCGAGCCTGGGGTAGATTACAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCA
* * *
30759377 GTCAATCTCTTACCCCGATCATGGGA
131 GTCAATCTCTTACCCCGAGCTTGGGG
*
30759403 CAGATTGCAGTCATTCGA
1 CAGATTGCAGCCATTCGA
30759421 AGACGAGATG
Statistics
Matches: 544, Mismatches: 87, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
154 16 0.03
155 301 0.55
156 222 0.41
157 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (156 bp):
CAGATTGCAGCCATTCGATCTTTTACCTCGAGCCTGAGGCAGATCATCATCAGCCAATCTCTTAC
CCCGAGCCTGGGGTAGATTACAGCCATTCGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCA
GTCAATCTCTTACCCCGAGCTTGGGG
Found at i:30759407 original size:39 final size:39
Alignment explanation
Indices: 30758655--30759394 Score: 542
Period size: 39 Copynumber: 19.1 Consensus size: 39
30758645 CTTTTACTCT
* * **
30758655 GAGCATGGGGCAGATCATTATTAG-CAAATCTCTTACCCC
1 GAGCCTGGGGCAGATCATCACCAGTC-AATCTCTTACCCC
** * * * *
30758694 GATTCTGGGGTAGATTA-CAGCCATTCGATCTCTTACCCC
1 GAGCCTGGGGCAGATCATCA-CCAGTCAATCTCTTACCCC
* *
30758733 GAGCCTAGGGCAGATCATCATCAG-CAAATCTCTTACCCC
1 GAGCCTGGGGCAGATCATCACCAGTC-AATCTCTTACCCC
* * * **
30758772 GAGCTTGGGGCAGAT--TGCAATCATTTGATCTCTTACCCC
1 GAGCCTGGGGCAGATCAT-C-ACCAGTCAATCTCTTACCCC
* * **
30758811 GAGCCTGGGGTAGATCATCATCAGGAAATCTCTTACCCC
1 GAGCCTGGGGCAGATCATCACCAGTCAATCTCTTACCCC
* * *** * * *
30758850 GAGCCTTGGGTAGATTGCCACCAATCAATCTCTTGCCTC
1 GAGCCTGGGGCAGATCATCACCAGTCAATCTCTTACCCC
* * * ** *
30758889 GAGCATGGGGCAGATAATCATCAACCAATCTCTTATCCC
1 GAGCCTGGGGCAGATCATCACCAGTCAATCTCTTACCCC
** * * *
30758928 GAGCCTGGGGCAGATTGT-AGCCATTCAATCTTTTACCTC
1 GAGCCTGGGGCAGATCATCA-CCAGTCAATCTCTTACCCC
* * * *
30758967 GAGCCTGAGGCAGATCACCATCAGCCAATCTCTTA-CCC
1 GAGCCTGGGGCAGATCATCACCAGTCAATCTCTTACCCC
** * * *
30759005 GAGCCTGGGGCAGATTGT-AGTCATTCGATCTCTTACCCC
1 GAGCCTGGGGCAGATCATCA-CCAGTCAATCTCTTACCCC
* *
30759044 TAGCCTAGGGCAGATCATCACCAGTCAATCTCTTACCCC
1 GAGCCTGGGGCAGATCATCACCAGTCAATCTCTTACCCC
* * * *
30759083 GAGCTTGGGGCAGAT--TGCAGCCATTCGATCTTTTACCCC
1 GAGCCTGGGGCAGATCAT-CA-CCAGTCAATCTCTTACCCC
* *
30759122 GAGCCTGAGGCAAATCATCACCAGTCAATCTCTTACCCC
1 GAGCCTGGGGCAGATCATCACCAGTCAATCTCTTACCCC
* * * * * *
30759161 GAGCTTGGGGTAAATTA-CAGCCATTCGATCTCTTACCCC
1 GAGCCTGGGGCAGATCATCA-CCAGTCAATCTCTTACCCC
* *
30759200 GAGCCT-AGGCAGATCATCACCAATCAATCTCTTACCCC
1 GAGCCTGGGGCAGATCATCACCAGTCAATCTCTTACCCC
* * * **
30759238 GAGCCTTGGGTC-GAT--TGCAGCCATTCGATCTCTTACCTT
1 GAGCC-TGGGGCAGATCAT-CA-CCAGTCAATCTCTTACCCC
* * *
30759277 GAGCTTGAGGCAAATCATCACCAGTCAATCTCTTACCCC
1 GAGCCTGGGGCAGATCATCACCAGTCAATCTCTTACCCC
* * *
30759316 GAGCCTGGGGCAGATTA-CAGCCATTCGATCTCTTA-CCC
1 GAGCCTGGGGCAGATCATCA-CCAGTCAATCTCTTACCCC
*
30759354 GAGCCTGGGGCAGATCATCATCAGTCAATCTCTTACCCC
1 GAGCCTGGGGCAGATCATCACCAGTCAATCTCTTACCCC
30759393 GA
1 GA
30759395 TCATGGGACA
Statistics
Matches: 540, Mismatches: 131, Indels: 60
0.74 0.18 0.08
Matches are distributed among these distances:
37 4 0.01
38 103 0.19
39 418 0.77
40 12 0.02
41 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (39 bp):
GAGCCTGGGGCAGATCATCACCAGTCAATCTCTTACCCC
Found at i:30760576 original size:19 final size:21
Alignment explanation
Indices: 30760533--30760579 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 21
30760523 TTTTAATATG
30760533 TATTAATATATTCAATATTTACT
1 TATT-ATATATTCAATA-TTACT
30760556 TATTATATATT-AATA-TACT
1 TATTATATATTCAATATTACT
30760575 TATTA
1 TATTA
30760580 ATTGCTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.38
21 4 0.17
22 7 0.29
23 4 0.17
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.53
Consensus pattern (21 bp):
TATTATATATTCAATATTACT
Found at i:30761818 original size:60 final size:59
Alignment explanation
Indices: 30761719--30761835 Score: 173
Period size: 60 Copynumber: 2.0 Consensus size: 59
30761709 ATAGTTTAAC
* * *
30761719 CCTTAAACTTTTCCAAAATTATATTTTTATCCCCGAACTTCTCAAAAACTACATTTTTAT
1 CCTTAAACTTTTCAAAAATTATATTTTTACCCCCAAACTT-TCAAAAACTACATTTTTAT
*
30761779 CCTTAAACTTCTT-AAAAATTATATTTTTACCCCCAAACTTTCAAAAATTACATTTTT
1 CCTTAAACTT-TTCAAAAATTATATTTTTACCCCCAAACTTTCAAAAACTACATTTTT
30761836 GCCCCCAGAC
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 16 0.31
60 34 0.65
61 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.01, T:0.42
Consensus pattern (59 bp):
CCTTAAACTTTTCAAAAATTATATTTTTACCCCCAAACTTTCAAAAACTACATTTTTAT
Found at i:30762009 original size:59 final size:59
Alignment explanation
Indices: 30761704--30762028 Score: 241
Period size: 59 Copynumber: 5.6 Consensus size: 59
30761694 AACTATCTAG
* * ** * *
30761704 AAATTATAGTTTAACCCTTAAACTTTTCCAAAATTATATTTTTATCCC-CGAACTTCTCAA
1 AAATTACATTTTAACCCCCAAACTTTTCAAAAATTACATTTTTA-CCCTCGAACTTC-CAA
* * * ** * * * *
30761764 AAACTACATTTTTATCCTTAAACTTCTT-AAAAATTATATTTTTACCCCCAAACTTTCAA
1 AAATTACATTTTAACCCCCAAACTT-TTCAAAAATTACATTTTTACCCTCGAACTTCCAA
** * * * * * **
30761823 AAATTACATTTTTGCCCCCAGAC-TTCCAAAAATCACATTTTGACCCTCGAATTTATAA
1 AAATTACATTTTAACCCCCAAACTTTTCAAAAATTACATTTTTACCCTCGAACTTCCAA
* * ** ** * *
30761881 AAATTACATTTT-TCCCTCAAAC-TTTCAAAAGCTACATTTTTGTCCTTGAACTTTCAA
1 AAATTACATTTTAACCCCCAAACTTTTCAAAAATTACATTTTTACCCTCGAACTTCCAA
* * *
30761938 AAATCACTTTTTAACCCCCGAACTTTTCAAAAATTACATTTTTACCCTCGAACTTCCAA
1 AAATTACATTTTAACCCCCAAACTTTTCAAAAATTACATTTTTACCCTCGAACTTCCAA
**
30761997 AAATTACATTTT-ACCCTAAAAC-TTTCAAAAAT
1 AAATTACATTTTAACCCCCAAACTTTTCAAAAAT
30762029 CAAGTTTTTT
Statistics
Matches: 207, Mismatches: 53, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
57 52 0.25
58 50 0.24
59 62 0.30
60 41 0.20
61 2 0.01
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.37
Consensus pattern (59 bp):
AAATTACATTTTAACCCCCAAACTTTTCAAAAATTACATTTTTACCCTCGAACTTCCAA
Found at i:30762027 original size:29 final size:29
Alignment explanation
Indices: 30761717--30762125 Score: 271
Period size: 29 Copynumber: 14.0 Consensus size: 29
30761707 TTATAGTTTA
* * *
30761717 ACCCTTAAACTTTTCCAAAATTATATTTTT
1 ACCCTCAAAC-TTTCAAAAATTACATTTTT
* *
30761747 ATCCC-CGAACTTCTCAAAAACTACATTTTT
1 A-CCCTCAAACTT-TCAAAAATTACATTTTT
* * * *
30761777 ATCCTTAAACTTCTTAAAAATTATATTTTT
1 ACCCTCAAACTT-TCAAAAATTACATTTTT
*
30761807 ACCCCCAAACTTTCAAAAATTACATTTTT
1 ACCCTCAAACTTTCAAAAATTACATTTTT
* * * * * *
30761836 GCCCCCAGACTTCCAAAAATCACATTTTG
1 ACCCTCAAACTTTCAAAAATTACATTTTT
* *
30761865 ACCCTCGAA-TTTATAAAAATTACATTTTT
1 ACCCTCAAACTTT-CAAAAATTACATTTTT
**
30761894 -CCCTCAAACTTTCAAAAGCTACATTTTT
1 ACCCTCAAACTTTCAAAAATTACATTTTT
** ** *
30761922 GTCCTTGAACTTTCAAAAATCAC-TTTTT
1 ACCCTCAAACTTTCAAAAATTACATTTTT
* *
30761950 AACCCCCGAACTTTTCAAAAATTACATTTTT
1 -ACCCTCAAAC-TTTCAAAAATTACATTTTT
* *
30761981 ACCCTCGAACTTCCAAAAATTACA-TTTT
1 ACCCTCAAACTTTCAAAAATTACATTTTT
* *
30762009 ACCCTAAAACTTTCAAAAATCA-AGTTTTTT
1 ACCCTCAAACTTTCAAAAATTACA--TTTTT
* * * *
30762039 A-CCT-AGAATTTTCCTAAAATAATATTTTT
1 ACCCTCA-AACTTT-CAAAAATTACATTTTT
* * *
30762068 ACCCCTAAAACTTTCCAAAATTACATTTTA
1 A-CCCTCAAACTTTCAAAAATTACATTTTT
* *
30762098 ACCC-CAAAGTCTTCAAAACTT-CATTTTT
1 ACCCTCAAACT-TTCAAAAATTACATTTTT
30762126 GACCTTGTTC
Statistics
Matches: 297, Mismatches: 63, Indels: 40
0.74 0.16 0.10
Matches are distributed among these distances:
27 1 0.00
28 60 0.20
29 124 0.42
30 94 0.32
31 17 0.06
32 1 0.00
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.38
Consensus pattern (29 bp):
ACCCTCAAACTTTCAAAAATTACATTTTT
Found at i:30762038 original size:145 final size:146
Alignment explanation
Indices: 30761754--30762030 Score: 350
Period size: 145 Copynumber: 1.9 Consensus size: 146
30761744 TTTATCCCCG
* * *
30761754 AACTTCTCAAAAACTACATTTTTATCCTTAAACTTCTTAAAAATTATATTTTTACCCCCAAACTT
1 AACTTCTCAAAAACTACATTTTTATCCTTAAACTTCTCAAAAATCATATTTTAACCCCCAAACTT
* ** *
30761819 TCAAAAATTACATTTTTGCCCCCAGACTTCCAAAAATCACATTTTGACCCTCGAATTTATAAAAA
66 TCAAAAATTACATTTTTACCCCCAGACTTCCAAAAATCACATTTTGACCCTAAAATTTACAAAAA
*
30761884 TTACATTTTTCCCTCA
131 TCACATTTTTCCCTCA
* * * *
30761900 AACTT-TCAAAAGCTACATTTTTGTCCTTGAACTT-TCAAAAATCACT-TTTTAACCCCCGAACT
1 AACTTCTCAAAAACTACATTTTTATCCTTAAACTTCTCAAAAATCA-TATTTTAACCCCCAAAC-
* *
30761962 TTTCAAAAATTACATTTTTACCCTC-GAACTTCCAAAAATTACATTTT-ACCCTAAAACTTT-CA
64 TTTCAAAAATTACATTTTTACCCCCAG-ACTTCCAAAAATCACATTTTGACCCTAAAA-TTTACA
30762024 AAAATCA
127 AAAATCA
30762031 AGTTTTTTAC
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
144 36 0.32
145 72 0.64
146 5 0.04
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (146 bp):
AACTTCTCAAAAACTACATTTTTATCCTTAAACTTCTCAAAAATCATATTTTAACCCCCAAACTT
TCAAAAATTACATTTTTACCCCCAGACTTCCAAAAATCACATTTTGACCCTAAAATTTACAAAAA
TCACATTTTTCCCTCA
Found at i:30762220 original size:14 final size:15
Alignment explanation
Indices: 30762203--30762241 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
30762193 GTATTTTCTC
*
30762203 ATTTATTTTT-TCGT
1 ATTTATTTTTCTCAT
30762217 ATTTTATTTTTCTCAT
1 A-TTTATTTTTCTCAT
30762233 ATTTATTTT
1 ATTTATTTT
30762242 CGTATATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 17 0.77
16 4 0.18
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.72
Consensus pattern (15 bp):
ATTTATTTTTCTCAT
Found at i:30762248 original size:14 final size:15
Alignment explanation
Indices: 30762203--30762250 Score: 57
Period size: 14 Copynumber: 3.3 Consensus size: 15
30762193 GTATTTTCTC
30762203 ATTTATTTTTTCGTAT
1 ATTTA-TTTTTCGTAT
30762219 -TTTATTTTTC-TCAT
1 ATTTATTTTTCGT-AT
30762233 ATTTA-TTTTCGTAT
1 ATTTATTTTTCGTAT
30762247 ATTT
1 ATTT
30762251 GTTCATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 1 0.03
14 19 0.66
15 9 0.31
ACGTcount: A:0.19, C:0.08, G:0.04, T:0.69
Consensus pattern (15 bp):
ATTTATTTTTCGTAT
Found at i:30762533 original size:97 final size:97
Alignment explanation
Indices: 30762367--30762560 Score: 320
Period size: 97 Copynumber: 2.0 Consensus size: 97
30762357 AAAATATTTA
*
30762367 AAATCGAGGCAATATTCCTTTATTTTGGGTTTTGAAAATTCGTGCCTTAACTTACTAGGTACGAT
1 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGGTACGAT
*
30762432 TTTTCTTCAAACTGGGATAATCGAATACCCTT
66 TTTTCTTCAAACCGGGATAATCGAATACCCTT
* *
30762464 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAATTTTGTGCCTTAACTTACTAGGT--GAG
1 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGGTACGA-
30762527 TCTTTTCTTCAAACCGGGATAATCGAATACCCTT
65 T-TTTTCTTCAAACCGGGATAATCGAATACCCTT
30762561 TTTCAAGGTT
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
95 2 0.02
96 1 0.01
97 88 0.97
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (97 bp):
AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGGTACGAT
TTTTCTTCAAACCGGGATAATCGAATACCCTT
Found at i:30764478 original size:16 final size:16
Alignment explanation
Indices: 30764459--30764489 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30764449 GTGTAAAAAA
*
30764459 ACATAAATATAAATAG
1 ACATAAAAATAAATAG
30764475 ACATAAAAATAAATA
1 ACATAAAAATAAATA
30764490 AAAATTATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.23
Consensus pattern (16 bp):
ACATAAAAATAAATAG
Found at i:30765166 original size:21 final size:21
Alignment explanation
Indices: 30765142--30765188 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
30765132 TTAAACTAAC
*
30765142 TAAAAAAC-AAATTTTTATTTT
1 TAAAAAACTAAACTTTT-TTTT
*
30765163 TAAAAATCTAAACTTTTTTTT
1 TAAAAAACTAAACTTTTTTTT
30765184 TAAAA
1 TAAAA
30765189 TTACTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (21 bp):
TAAAAAACTAAACTTTTTTTT
Found at i:30765291 original size:24 final size:23
Alignment explanation
Indices: 30765230--30765292 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 23
30765220 TTCGAAATAG
*
30765230 TTAAAAAAA--AACAAAATTTTGT
1 TTAAAAAAACTAA-AAAATTTTCT
* *
30765252 TTAAAAAAATTTAAAAATTTTCCT
1 TTAAAAAAACTAAAAAATTTT-CT
*
30765276 TTAAAATAACTAAAAAA
1 TTAAAAAAACTAAAAAA
30765293 CCTATTTTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
22 9 0.27
23 8 0.24
24 16 0.48
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (23 bp):
TTAAAAAAACTAAAAAATTTTCT
Found at i:30765453 original size:138 final size:137
Alignment explanation
Indices: 30765046--30765604 Score: 505
Period size: 138 Copynumber: 4.1 Consensus size: 137
30765036 TTTTTCAAAC
* * * * **
30765046 AAAATCACCACCTTTATTGAAAATCAAAACTTTTATTTTGAAATGGTTATGAAAAATCAAAC-TT
1 AAAATCACTACTTTTCTTAAAAATCAAAACTTTTATTTTGAAATGGTTAAAAAAAATCAAACTTT
* * * *
30765110 -TTTAAAAAATTAAAGTTTTTCTTTAAACTAACTAAAAAACAAATTTTTATTTTTAAAAATCTAA
66 GTTTAAAAATTTAAATTTTTTCTTTAAAATAACT---AAA-AAATATTTATTTTTAAAAATCTAA
**
30765174 ACTTTTTTTTT
127 ACTTTTTTTAA
* * * * * *
30765185 AAAATTACTA-TTTTCTTAAAAATCAAAACTTCTATTTCGAAATAGTTAAAAAAAAACAAAATTT
1 AAAATCACTACTTTTCTTAAAAATCAAAACTTTTATTTTGAAATGGTTAAAAAAAATC-AAACTT
* * ** **
30765249 TGTTTAAAAAAATTTAAAAATTTTCCTTTAAAATAACT-AAAAA-ACCTATTTTT---AAT-TTT
65 TGTTT--AAAAATTT-AAATTTTTTCTTTAAAATAACTAAAAAATATTTATTTTTAAAAATCTAA
*
30765308 CCTTTTTTTTAAAA
127 AC-TTTTTTT--AA
30765322 AAAATCACTACTTTTCTTAAAAATCAAAACTTTTATTTTGAAATGGTTAAAAAAAATCAAACTTT
1 AAAATCACTACTTTTCTTAAAAATCAAAACTTTTATTTTGAAATGGTTAAAAAAAATCAAACTTT
* *
30765387 GTTTAAAAATTTAAATTTTTTATTTAAAATAACT-AAAAATATATATTTTTAAAAATCTAAACTT
66 GTTTAAAAATTTAAATTTTTTCTTTAAAATAACTAAAAAATATTTATTTTTAAAAATCTAAACTT
30765451 TTTTT--
131 TTTTTAA
* * *
30765456 -AAATCACTAATTTTCTTAAAAATC-AAA-----A--TT-AAATTGTTAAAAAAGATCAAACTTT
1 AAAATCACTACTTTTCTTAAAAATCAAAACTTTTATTTTGAAATGGTTAAAAAAAATCAAACTTT
* *
30765511 GTTTAAAAATTTAAATTTTTTCTTTAAAATGACTAAAAACATATTTTTATTTTTAAAAATTTAAA
66 GTTTAAAAATTTAAATTTTTTCTTTAAAATAACTAAAAA-ATA--TTTATTTTTAAAAATCTAAA
30765576 TTTTCTTTTTTTAA
128 ----CTTTTTTTAA
*
30765590 AAAATCACTATTTTT
1 AAAATCACTACTTTT
30765605 TCCAAGATCA
Statistics
Matches: 348, Mismatches: 46, Indels: 56
0.77 0.10 0.12
Matches are distributed among these distances:
124 55 0.16
125 6 0.02
126 3 0.01
127 1 0.00
128 18 0.05
132 11 0.03
133 23 0.07
134 26 0.07
135 39 0.11
137 19 0.05
138 98 0.28
139 16 0.05
140 4 0.01
141 3 0.01
143 7 0.02
144 19 0.05
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (137 bp):
AAAATCACTACTTTTCTTAAAAATCAAAACTTTTATTTTGAAATGGTTAAAAAAAATCAAACTTT
GTTTAAAAATTTAAATTTTTTCTTTAAAATAACTAAAAAATATTTATTTTTAAAAATCTAAACTT
TTTTTAA
Found at i:30768964 original size:26 final size:26
Alignment explanation
Indices: 30768935--30768998 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 26
30768925 GATAGTAATG
30768935 TAAAATGATAAATAAAATACGAA-AAC
1 TAAAAT-ATAAATAAAATACGAAGAAC
* * * * *
30768961 TAAAGTAAAAACAAAATATGAAGTAC
1 TAAAATATAAATAAAATACGAAGAAC
30768987 TAAAATATAAAT
1 TAAAATATAAAT
30768999 TTTAGATCTT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
25 13 0.45
26 16 0.55
ACGTcount: A:0.64, C:0.06, G:0.08, T:0.22
Consensus pattern (26 bp):
TAAAATATAAATAAAATACGAAGAAC
Found at i:30769241 original size:28 final size:28
Alignment explanation
Indices: 30769166--30769241 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 28
30769156 GGTTAAATAA
*
30769166 AAAAAATATAAAAGGATTTTTAAAAACAT
1 AAAAAA-ATAAAAGGAATTTTAAAAACAT
*
30769195 AAAAAAATAAAAGGAAATTTTAAAAGAGAT
1 AAAAAAATAAAAGG-AATTTTAAAA-ACAT
*
30769225 AAAAAAGTAAAA-GAATT
1 AAAAAAATAAAAGGAATT
30769242 AGATTAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
28 12 0.29
29 16 0.38
30 14 0.33
ACGTcount: A:0.66, C:0.01, G:0.11, T:0.22
Consensus pattern (28 bp):
AAAAAAATAAAAGGAATTTTAAAAACAT
Found at i:30770429 original size:100 final size:102
Alignment explanation
Indices: 30770313--30770516 Score: 349
Period size: 102 Copynumber: 2.0 Consensus size: 102
30770303 TACCTTTGAA
*
30770313 AATTTCTTTCTAATTCTATTGCTTTTTCTCTGTATATTTTTGT-T-TTTTTTGCCTATAAAAAAT
1 AATTTCTTTCTAATTCTATTACTTTTTCTCTGTATATTTTTGTGTGTTTTTTGCCTATAAAAAAT
*
30770376 TACATCAATGGTGATTGGGCTTAATTATAACCGAAAT
66 TACATCAATGGTGATTGGGCTTAATAATAACCGAAAT
*
30770413 AATTTCTTTCTGATTCTATTACTTTTTCTCTGTATATTTTTGTGTGTTTTTTGCCTATAAAAAAT
1 AATTTCTTTCTAATTCTATTACTTTTTCTCTGTATATTTTTGTGTGTTTTTTGCCTATAAAAAAT
* *
30770478 TACATCAATGGTGATTGGGCTTAATAATAGCTGAAAT
66 TACATCAATGGTGATTGGGCTTAATAATAACCGAAAT
30770515 AA
1 AA
30770517 GTACAAGTTA
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
100 41 0.42
101 1 0.01
102 55 0.57
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.48
Consensus pattern (102 bp):
AATTTCTTTCTAATTCTATTACTTTTTCTCTGTATATTTTTGTGTGTTTTTTGCCTATAAAAAAT
TACATCAATGGTGATTGGGCTTAATAATAACCGAAAT
Found at i:30775839 original size:6 final size:6
Alignment explanation
Indices: 30775828--30775894 Score: 54
Period size: 6 Copynumber: 11.8 Consensus size: 6
30775818 AGGCCCAACA
* **
30775828 AAATTT AAATTT AAATTT -ATTTT AGGTTT AAATTT --ATTAT AAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATT-T AAATTT
*
30775874 AAGTTT AAATTT --ATTT AAATT
1 AAATTT AAATTT AAATTT AAATT
30775895 AAAAAGTCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
4 7 0.15
5 5 0.10
6 33 0.69
7 3 0.06
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (6 bp):
AAATTT
Found at i:30775870 original size:11 final size:10
Alignment explanation
Indices: 30775854--30775894 Score: 55
Period size: 10 Copynumber: 3.8 Consensus size: 10
30775844 TTATTTTAGG
30775854 TTTAAATTTA
1 TTTAAATTTA
30775864 TTATAAATTTAA
1 TT-TAAATTT-A
30775876 GTTTAAATTTA
1 -TTTAAATTTA
30775887 TTTAAATT
1 TTTAAATT
30775895 AAAAAGTCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 10 0.36
11 8 0.29
12 8 0.29
13 2 0.07
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (10 bp):
TTTAAATTTA
Found at i:30775874 original size:17 final size:17
Alignment explanation
Indices: 30775833--30775880 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
30775823 CAACAAAATT
*
30775833 TAAATTTAAATTTATTT
1 TAAATTTAAATTTATTA
**
30775850 TAGGTTTAAATTTATTA
1 TAAATTTAAATTTATTA
*
30775867 TAAATTTAAGTTTA
1 TAAATTTAAATTTA
30775881 AATTTATTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
TAAATTTAAATTTATTA
Found at i:30775874 original size:23 final size:22
Alignment explanation
Indices: 30775831--30775894 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 22
30775821 CCCAACAAAA
* *
30775831 TTTAAATTTAAATTT-ATTTTAGG
1 TTTAAATTT--ATTTAAATTTAAG
30775854 TTTAAATTTATTATAAATTTAAG
1 TTTAAATTTATT-TAAATTTAAG
30775877 TTTAAATTTATTTAAATT
1 TTTAAATTTATTTAAATT
30775895 AAAAAGTCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
21 3 0.08
22 7 0.19
23 27 0.73
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (22 bp):
TTTAAATTTATTTAAATTTAAG
Found at i:30776226 original size:12 final size:13
Alignment explanation
Indices: 30776200--30776238 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
30776190 GCAAAAAGGA
*
30776200 GCAAAGAACATAG
1 GCAAAGAACAGAG
30776213 GCAAA-AACAGAG
1 GCAAAGAACAGAG
30776225 GCAAAGAAACAGAG
1 GCAAAG-AACAGAG
30776239 TTTTGGTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 11 0.48
13 5 0.22
14 7 0.30
ACGTcount: A:0.56, C:0.15, G:0.26, T:0.03
Consensus pattern (13 bp):
GCAAAGAACAGAG
Found at i:30777640 original size:29 final size:28
Alignment explanation
Indices: 30777530--30778001 Score: 249
Period size: 30 Copynumber: 16.1 Consensus size: 28
30777520 CCGAAGAGGT
* *
30777530 CCCTAAACTGTCCAAAAATTATATTTTAA
1 CCCTAAACT-TCCAAAAATTACATTTTGA
** * *
30777559 CCCCTGAAGTTTTCAAAAATTATATTTTGA
1 -CCCT-AAACTTCCAAAAATTACATTTTGA
*
30777589 CCCTCAAACTTCACAAAAATTACACTTTTGC
1 CCCT-AAACTTC-CAAAAATTACA-TTTTGA
* *
30777620 CCCTAAACTTCCTAAAATTACATTTTAA
1 CCCTAAACTTCCAAAAATTACATTTTGA
* *
30777648 CCCTAAACTTTCCAAAAAATTGCATTTTAA
1 CCCTAAAC-TTCC-AAAAATTACATTTTGA
* * *
30777678 CCCCTAAACTTCACCAAAATTATATTTTTGT
1 -CCCTAAACTTC-CAAAAATTACA-TTTTGA
* * *
30777709 CCCCAAACTTCCTAATATTACATTTCT-A
1 CCCTAAACTTCCAAAAATTACATTT-TGA
* *
30777737 CCTTAAACTTTCCAAAAATTACATTTTTA
1 CCCTAAAC-TTCCAAAAATTACATTTTGA
** *
30777766 CTATAAACTTCC-AAAATTGCATTTTTGA
1 CCCTAAACTTCCAAAAATTACA-TTTTGA
* * * *
30777794 CCCCAAACTTTTTCAAAAGTTACATTTTGT
1 CCCTAAAC--TTCCAAAAATTACATTTTGA
* *
30777824 CCCTAAACTTTCAAGAATTACCATTTT-A
1 CCCTAAACTTCCAAAAATTA-CATTTTGA
**
30777852 CCCTCGGA-TATCCAAAAA-TATCATTTTTGA
1 CCCT-AAACT-TCCAAAAATTA-CA-TTTTGA
* *
30777882 CCTTAAACTTTCCAAAAATTACATTTTTA
1 CCCTAAAC-TTCCAAAAATTACATTTTGA
* * *
30777911 CTCTTGAA-TATCCAAAAATTCCATTTTTGA
1 C-CCTAAACT-TCCAAAAATTACA-TTTTGA
* ***
30777941 CCTCAAAACTTTTGAAAATTACCATTTT-A
1 CC-CTAAACTTCCAAAAATTA-CATTTTGA
* *
30777970 CCCCTGAA-TGTCCAAAAATTCCATTCTTGA
1 -CCCTAAACT-TCCAAAAATTACATT-TTGA
30778000 CC
1 CC
30778002 TCGAACCTTT
Statistics
Matches: 340, Mismatches: 69, Indels: 67
0.71 0.14 0.14
Matches are distributed among these distances:
27 8 0.02
28 61 0.18
29 105 0.31
30 128 0.38
31 38 0.11
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.36
Consensus pattern (28 bp):
CCCTAAACTTCCAAAAATTACATTTTGA
Found at i:30777650 original size:89 final size:90
Alignment explanation
Indices: 30777530--30777851 Score: 281
Period size: 89 Copynumber: 3.6 Consensus size: 90
30777520 CCGAAGAGGT
* * * * * * *
30777530 CCCTAAACTGTCCAAAAATTATATTTTAACCCCTGAAGTTTTC-AAAAATTATATTTTGA-CCCT
1 CCCTAAACT-TCCTAAAATTACATTTTAA-CCCTAAACTTTCCAAAAAATTACATTTTAACCCCT
30777593 CAAACTTCACAAAAATTACACTTTTG-C
64 -AAACTTCACAAAAATTACACTTTTGTC
*
30777620 CCCTAAACTTCCTAAAATTACATTTTAACCCTAAACTTTCCAAAAAATTGCATTTTAACCCCTAA
1 CCCTAAACTTCCTAAAATTACATTTTAACCCTAAACTTTCCAAAAAATTACATTTTAACCCCTAA
* * *
30777685 ACTTCACCAAAATTATATTTTTGTC
66 ACTTCACAAAAATTACACTTTTGTC
* * * **
30777710 CCC-AAACTTCCTAATATTACATTTCT-ACCTTAAACTTTCC-AAAAATTACATTTTTA-CTATA
1 CCCTAAACTTCCTAAAATTACATTT-TAACCCTAAACTTTCCAAAAAATTACATTTTAACCCCTA
* * *
30777771 AACTTC-C-AAAATTGCATTTTTGAC
65 AACTTCACAAAAATTACACTTTTGTC
** ** *
30777795 CCC-AAACTTTTTCAAAAGTTACATTTTGTCCCTAAACTTT-C-AAGAATTACCATTTTA
1 CCCTAAACTTCCT-AAAA-TTACATTTTAACCCTAAACTTTCCAAAAAATTA-CATTTTA
30777852 CCCTCGGATA
Statistics
Matches: 197, Mismatches: 27, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
85 24 0.12
86 13 0.07
87 33 0.17
88 24 0.12
89 85 0.43
90 18 0.09
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.37
Consensus pattern (90 bp):
CCCTAAACTTCCTAAAATTACATTTTAACCCTAAACTTTCCAAAAAATTACATTTTAACCCCTAA
ACTTCACAAAAATTACACTTTTGTC
Found at i:30777733 original size:59 final size:57
Alignment explanation
Indices: 30777534--30777908 Score: 210
Period size: 59 Copynumber: 6.4 Consensus size: 57
30777524 AGAGGTCCCT
* ** *
30777534 AAACTGTCCAAAAATTATATTTTAACCCCTGAAGTTTTCAAAAATTATATTTTGACCCTC
1 AAACT-TCCAAAAATTACATTTTAACCCCT-AAACTTCCAAAAATTATATTTTGACCC-C
* * * * *
30777594 AAACTTCACAAAAATTACACTTTT-GCCCCTAAACTTCCTAAAATTACATTTTAACCCT
1 AAACTTC-CAAAAATTACA-TTTTAACCCCTAAACTTCCAAAAATTATATTTTGACCCC
* * *
30777652 AAACTTTCCAAAAAATTGCATTTTAACCCCTAAACTTCACCAAAATTATATTTTTGTCCCC
1 AAAC-TTCC-AAAAATTACATTTTAACCCCTAAACTTC-CAAAAATTATA-TTTTGACCCC
* * * * * ***
30777713 AAACTTCCTAATATTACATTTCT-A-CCTTAAACTTTCCAAAAATTACATTTTTACTAT
1 AAACTTCCAAAAATTACATTT-TAACCCCTAAAC-TTCCAAAAATTATATTTTGACCCC
* * * * * * *
30777770 AAACTTCC-AAAATTGCATTTTTGACCCC-AAACTTTTTCAAAAGTTACATTTTGTCCCT
1 AAACTTCCAAAAATTACA-TTTTAACCCCTAAAC--TTCCAAAAATTATATTTTGACCCC
* * ** **
30777828 AAACTTTCAAGAATTACCATTTT-A-CCCTCGGA-TATCCAAAAA-TATCATTTTTGACCTT
1 AAACTTCCAAAAATTA-CATTTTAACCCCT-AAACT-TCCAAAAATTAT-A-TTTTGACCCC
30777886 AAACTTTCCAAAAATTACATTTT
1 AAAC-TTCCAAAAATTACATTTT
30777909 TACTCTTGAA
Statistics
Matches: 246, Mismatches: 48, Indels: 44
0.73 0.14 0.13
Matches are distributed among these distances:
56 11 0.04
57 31 0.13
58 72 0.29
59 81 0.33
60 36 0.15
61 15 0.06
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.37
Consensus pattern (57 bp):
AAACTTCCAAAAATTACATTTTAACCCCTAAACTTCCAAAAATTATATTTTGACCCC
Found at i:30777909 original size:30 final size:30
Alignment explanation
Indices: 30777572--30777952 Score: 199
Period size: 29 Copynumber: 13.0 Consensus size: 30
30777562 CTGAAGTTTT
* *
30777572 CAAAAATTATA-TTTTGACCCTCAAAC-TTC
1 CAAAAATTACATTTTTGA-CCTTAAACTTTC
* * *
30777601 ACAAAAATTACACTTTTGCCCCTAAAC-TTC
1 -CAAAAATTACATTTTTGACCTTAAACTTTC
* * *
30777631 CTAAAATTACA-TTTTAACCCTAAACTTTC
1 CAAAAATTACATTTTTGACCTTAAACTTTC
* * *
30777660 CAAAAAATTGCA-TTTTAACCCCTAAAC-TTC
1 C-AAAAATTACATTTTTGA-CCTTAAACTTTC
* * * **
30777690 ACCAAAATTATATTTTTGTCCCCAAAC-TTC
1 -CAAAAATTACATTTTTGACCTTAAACTTTC
* * *
30777720 CTAATATTACATTTCT-ACCTTAAACTTTC
1 CAAAAATTACATTTTTGACCTTAAACTTTC
30777749 CAAAAATTACATTTTT-A-CTATAAAC-TTC
1 CAAAAATTACATTTTTGACCT-TAAACTTTC
* ** *
30777777 C-AAAATTGCATTTTTGACCCCAAACTTTTT
1 CAAAAATTACATTTTTGACCTTAAAC-TTTC
* * *
30777807 CAAAAGTTACA-TTTTGTCCCTAAACTTT-
1 CAAAAATTACATTTTTGACCTTAAACTTTC
* *** *
30777835 CAAGAATTACCA-TTTT-ACCCTCGGA-TATC
1 CAAAAATTA-CATTTTTGA-CCTTAAACTTTC
30777864 CAAAAA-TATCATTTTTGACCTTAAACTTTC
1 CAAAAATTA-CATTTTTGACCTTAAACTTTC
* *
30777894 CAAAAATTACATTTTT-ACTCTTGAA-TATC
1 CAAAAATTACATTTTTGAC-CTTAAACTTTC
* *
30777923 CAAAAATTCCATTTTTGACCTCAAAACTTT
1 CAAAAATTACATTTTTGACCT-TAAACTTT
30777953 TGAAAATTAC
Statistics
Matches: 274, Mismatches: 53, Indels: 47
0.73 0.14 0.13
Matches are distributed among these distances:
27 13 0.05
28 42 0.15
29 96 0.35
30 94 0.34
31 29 0.11
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.37
Consensus pattern (30 bp):
CAAAAATTACATTTTTGACCTTAAACTTTC
Found at i:30777925 original size:59 final size:58
Alignment explanation
Indices: 30777818--30778034 Score: 224
Period size: 59 Copynumber: 3.7 Consensus size: 58
30777808 AAAAGTTACA
* * * * *
30777818 TTTTGTCCCTAAACTTTCAAGAATTACCATTTTACCCTCGGATATCCAAAAATAT-CAT
1 TTTTGACCTTAAACTTTCAAAAATTACCATTTTACCCTTGAATATCCAAAAAT-TCCAT
*
30777876 TTTTGACCTTAAACTTTCCAAAAATTA-CATTTTTACTCTTGAATATCCAAAAATTCCAT
1 TTTTGACCTTAAACTTT-CAAAAATTACCA-TTTTACCCTTGAATATCCAAAAATTCCAT
* ** * *
30777935 TTTTGACCTCAAAACTTTTGAAAATTACCATTTTACCCCTGAATGTCCAAAAATTCCAT
1 TTTTGACCT-TAAACTTTCAAAAATTACCATTTTACCCTTGAATATCCAAAAATTCCAT
* * * * *
30777994 TCTTGACCTCGAACCTTTC-AAAATTATCGTTTTACCCTTGA
1 TTTTGACCT-TAAACTTTCAAAAATTACCATTTTACCCTTGA
30778035 GCATAAAAAA
Statistics
Matches: 135, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
58 37 0.27
59 89 0.66
60 9 0.07
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (58 bp):
TTTTGACCTTAAACTTTCAAAAATTACCATTTTACCCTTGAATATCCAAAAATTCCAT
Found at i:30778045 original size:58 final size:59
Alignment explanation
Indices: 30777924--30778046 Score: 131
Period size: 58 Copynumber: 2.1 Consensus size: 59
30777914 TTGAATATCC
* * * ** **
30777924 AAAAATTCCATTTTTGACCTCAAAACTTTTGAAAATTACCATTTTACCCCTGAATGTCC
1 AAAAATTCCATTCTTGACCTCAAAACCTTTCAAAATTACCATTTTACCCCTGAACATAA
* * * * *
30777983 AAAAATTCCATTCTTGACCTC-GAACCTTTCAAAATTATCGTTTTACCCTTGAGCATAA
1 AAAAATTCCATTCTTGACCTCAAAACCTTTCAAAATTACCATTTTACCCCTGAACATAA
30778041 AAAAAT
1 AAAAAT
30778047 CACATTTTTG
Statistics
Matches: 52, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
58 32 0.62
59 20 0.38
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (59 bp):
AAAAATTCCATTCTTGACCTCAAAACCTTTCAAAATTACCATTTTACCCCTGAACATAA
Found at i:30788419 original size:15 final size:16
Alignment explanation
Indices: 30788389--30788422 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
30788379 AAGACTGAAA
30788389 TTAAAAAATAATAAAT
1 TTAAAAAATAATAAAT
*
30788405 TTAAAAAATCA-AAAT
1 TTAAAAAATAATAAAT
30788420 TTA
1 TTA
30788423 CTTTTATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
TTAAAAAATAATAAAT
Found at i:30798196 original size:17 final size:16
Alignment explanation
Indices: 30798157--30798197 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 16
30798147 AATTTATTGA
30798157 AAAAAATTGAAAAAAG
1 AAAAAATTGAAAAAAG
30798173 AAGAAAATTGAAAAAAG
1 AA-AAAATTGAAAAAAG
30798190 ATAAAAAT
1 A-AAAAAT
30798198 GTGTTTGAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.09
17 20 0.87
18 1 0.04
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (16 bp):
AAAAAATTGAAAAAAG
Found at i:30800095 original size:19 final size:19
Alignment explanation
Indices: 30800066--30800241 Score: 174
Period size: 19 Copynumber: 9.3 Consensus size: 19
30800056 CGACTGCATC
*
30800066 AAGAGCGATACTGGCTCGT
1 AAGAGCAATACTGGCTCGT
* *
30800085 GAGAGCAATACTGGCTCGC
1 AAGAGCAATACTGGCTCGT
* *
30800104 AAGAGAAATATTGGCTCGT
1 AAGAGCAATACTGGCTCGT
* *
30800123 AAGAGCAATACTAGCTCAT
1 AAGAGCAATACTGGCTCGT
** *
30800142 AAGAGTGATACTGGCTCAT
1 AAGAGCAATACTGGCTCGT
* * *
30800161 GAGAGCAATATTGGCTCGC
1 AAGAGCAATACTGGCTCGT
*
30800180 AAGTGCAATACTGGCTCGT
1 AAGAGCAATACTGGCTCGT
* *
30800199 AAGAG-AGATACTGACTAGT
1 AAGAGCA-ATACTGGCTCGT
* *
30800218 GAGAGCAATACTGACTCGT
1 AAGAGCAATACTGGCTCGT
30800237 AAGAG
1 AAGAG
30800242 TAGTACTGTA
Statistics
Matches: 125, Mismatches: 30, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
18 1 0.01
19 123 0.98
20 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (19 bp):
AAGAGCAATACTGGCTCGT
Found at i:30800248 original size:19 final size:18
Alignment explanation
Indices: 30800188--30800249 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
30800178 GCAAGTGCAA
*
30800188 TACTGGCTCGTAAGAGAG
1 TACTGACTCGTAAGAGAG
* * *
30800206 ATACTGACTAGTGAGAGCAA
1 -TACTGACTCGTAAGAG-AG
30800226 TACTGACTCGTAAGAGTAG
1 TACTGACTCGTAAGAG-AG
30800245 TACTG
1 TACTG
30800250 TACTGGCTCG
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
19 33 0.97
20 1 0.03
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.24
Consensus pattern (18 bp):
TACTGACTCGTAAGAGAG
Found at i:30800249 original size:57 final size:57
Alignment explanation
Indices: 30800066--30800241 Score: 194
Period size: 57 Copynumber: 3.1 Consensus size: 57
30800056 CGACTGCATC
* * * ** *
30800066 AAGAGCGATACTGGCTCGTGAGAGCA-ATACTGGCTCGCAAGAGAAATATTGGCTCGT
1 AAGAGCAATACTGGCTCGTAAGAG-AGATACTGGCTAGTGAGAGCAATATTGGCTCGT
* * * *
30800123 AAGAGCAATACTAGCTCATAAGAGTGATACTGGCTCA-TGAGAGCAATATTGGCTCGC
1 AAGAGCAATACTGGCTCGTAAGAGAGATACTGGCT-AGTGAGAGCAATATTGGCTCGT
* * * *
30800180 AAGTGCAATACTGGCTCGTAAGAGAGATACTGACTAGTGAGAGCAATACTGACTCGT
1 AAGAGCAATACTGGCTCGTAAGAGAGATACTGGCTAGTGAGAGCAATATTGGCTCGT
30800237 AAGAG
1 AAGAG
30800242 TAGTACTGTA
Statistics
Matches: 97, Mismatches: 19, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
56 1 0.01
57 96 0.99
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (57 bp):
AAGAGCAATACTGGCTCGTAAGAGAGATACTGGCTAGTGAGAGCAATATTGGCTCGT
Found at i:30805535 original size:50 final size:50
Alignment explanation
Indices: 30805481--30805575 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 50
30805471 TAATTTAAGC
*
30805481 ATGTTCAATGATTTTAA-AAAAACGTTATGACT-AAAGAATTTGAAAACACT
1 ATGTTCAATGA-TTTAAGAAAAAAGTTATGA-TAAAAGAATTTGAAAACACT
30805531 ATGTTCAATGATTTAAGAAAAAAGTTATGATAAAAGAATTTGAAA
1 ATGTTCAATGATTTAAGAAAAAAGTTATGATAAAAGAATTTGAAA
30805576 TGACAAATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
49 6 0.14
50 36 0.86
ACGTcount: A:0.48, C:0.06, G:0.14, T:0.32
Consensus pattern (50 bp):
ATGTTCAATGATTTAAGAAAAAAGTTATGATAAAAGAATTTGAAAACACT
Found at i:30810985 original size:55 final size:55
Alignment explanation
Indices: 30810915--30811051 Score: 163
Period size: 55 Copynumber: 2.5 Consensus size: 55
30810905 GATAGTTTGA
* * * *
30810915 GCGTAAGTT-TGGATATGCTCATGTAGTGAGCTG-CCAAATATGATGATAATT-TTG
1 GCGTAA-TTCTGGATATGCTCATGCAGCGAGCTGTCC-AATACGATGATAATTCTAG
* * *
30810969 GACGTAATTCTGGATATGCTCATACAGCGAGCTGTCCGATGCGATGATAATTCTAG
1 G-CGTAATTCTGGATATGCTCATGCAGCGAGCTGTCCAATACGATGATAATTCTAG
30811025 GCGTAATTCTGGATATGCTCATGCAGC
1 GCGTAATTCTGGATATGCTCATGCAGC
30811052 AACATTAGTT
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
54 3 0.04
55 63 0.89
56 5 0.07
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (55 bp):
GCGTAATTCTGGATATGCTCATGCAGCGAGCTGTCCAATACGATGATAATTCTAG
Found at i:30812103 original size:17 final size:17
Alignment explanation
Indices: 30812081--30812113 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
30812071 ACTAACATTT
*
30812081 AAATGCAATGACAATGA
1 AAATGCAACGACAATGA
30812098 AAATGCAACGACAATG
1 AAATGCAACGACAATG
30812114 CTTACTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.15, G:0.18, T:0.15
Consensus pattern (17 bp):
AAATGCAACGACAATGA
Found at i:30812262 original size:18 final size:19
Alignment explanation
Indices: 30812220--30812263 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
30812210 TGGCTGCATG
30812220 GTGCTTCTTCTTCCTTCTCT
1 GTGCTT-TTCTTCCTTCTCT
30812240 -T-CTTTTCTTCCTT-TCT
1 GTGCTTTTCTTCCTTCTCT
30812256 GTGCTTTT
1 GTGCTTTT
30812264 TGTCCTTGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 3 0.14
17 10 0.45
18 8 0.36
19 1 0.05
ACGTcount: A:0.00, C:0.30, G:0.09, T:0.61
Consensus pattern (19 bp):
GTGCTTTTCTTCCTTCTCT
Found at i:30819711 original size:31 final size:30
Alignment explanation
Indices: 30819603--30819713 Score: 92
Period size: 32 Copynumber: 3.8 Consensus size: 30
30819593 TATGACATTA
* *
30819603 AAAATATAATTTTATTA-CTTTTAATAATT
1 AAAATATAATTTTATTAGTTTTTAAAAATT
*
30819632 ----TATATTTTTA-TAGTTTTTAAAAGATT
1 AAAATATAATTTTATTAGTTTTTAAAA-ATT
* * *
30819658 AAATTAAAATTTTATTATTTTTTGAAAAATT
1 AAAATATAATTTTATTAGTTTTT-AAAAATT
30819689 AAAAATATAATTTTATTA-TTTTTAA
1 -AAAATATAATTTTATTAGTTTTTAA
30819714 TTTAAAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
24 2 0.03
25 16 0.25
26 3 0.05
30 10 0.15
31 15 0.23
32 19 0.29
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (30 bp):
AAAATATAATTTTATTAGTTTTTAAAAATT
Found at i:30820931 original size:14 final size:14
Alignment explanation
Indices: 30820912--30820941 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
30820902 AAGTGATTTT
*
30820912 AATTGAAATGGTAA
1 AATTGAAATCGTAA
30820926 AATTGAAATCGTAA
1 AATTGAAATCGTAA
30820940 AA
1 AA
30820942 GTTATGAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.03, G:0.17, T:0.27
Consensus pattern (14 bp):
AATTGAAATCGTAA
Found at i:30821986 original size:14 final size:15
Alignment explanation
Indices: 30821956--30822004 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 15
30821946 ATAAGAAAAT
*
30821956 ATTATTAAATTATTTA
1 ATTATT-AATTAGTTA
30821972 ATT-TTAATTAGTTA
1 ATTATTAATTAGTTA
30821986 ATTATTAGATTATGTTA
1 ATTATTA-ATTA-GTTA
30822003 AT
1 AT
30822005 AATATTGTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 11 0.38
15 5 0.17
16 7 0.24
17 6 0.21
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (15 bp):
ATTATTAATTAGTTA
Found at i:30825225 original size:29 final size:29
Alignment explanation
Indices: 30825181--30825256 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 29
30825171 ATAAATGAAT
* * * * *
30825181 AATCTATATCTGGCTCGAAAAGAGTACTG
1 AATCTGTATCTAGCTCGAAAAGAGCAATA
*
30825210 AATCTGTATCTAGCTCG-AATGAGCAATA
1 AATCTGTATCTAGCTCGAAAAGAGCAATA
*
30825238 AATCAGTATCTAGCTCGAA
1 AATCTGTATCTAGCTCGAA
30825257 TTAGCAATTA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 23 0.59
29 16 0.41
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (29 bp):
AATCTGTATCTAGCTCGAAAAGAGCAATA
Found at i:30825249 original size:28 final size:28
Alignment explanation
Indices: 30825210--30825264 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
30825200 AAGAGTACTG
*
30825210 AATCTGTATCTAGCTCGAATGAGCAATA
1 AATCAGTATCTAGCTCGAATGAGCAATA
*
30825238 AATCAGTATCTAGCTCGAATTAGCAAT
1 AATCAGTATCTAGCTCGAATGAGCAAT
30825265 TAGTCTGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (28 bp):
AATCAGTATCTAGCTCGAATGAGCAATA
Found at i:30838258 original size:31 final size:29
Alignment explanation
Indices: 30838220--30838345 Score: 77
Period size: 32 Copynumber: 4.3 Consensus size: 29
30838210 TTAGATTGTA
30838220 TATTTTTATGACATTAAAAATATAATTTTAT
1 TATTTTTATGA-ATT-AAAATATAATTTTAT
*
30838251 TATTTTTAAT-AATT----TATATTTTTA-
1 TATTTTT-ATGAATTAAAATATAATTTTAT
** * *
30838275 TAGTTTTTAAAAGATTAAATTAAAATTTTAT
1 TA-TTTTTATGA-ATTAAAATATAATTTTAT
30838306 TATTTTT-TGAAAAATTAAAAATATAATTTTAT
1 TATTTTTATG---AATT-AAAATATAATTTTAT
30838338 TATTTTTA
1 TATTTTTA
30838346 ATTTAAAATT
Statistics
Matches: 73, Mismatches: 8, Indels: 26
0.68 0.07 0.24
Matches are distributed among these distances:
24 3 0.04
25 15 0.21
26 3 0.04
30 16 0.22
31 13 0.18
32 23 0.32
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (29 bp):
TATTTTTATGAATTAAAATATAATTTTAT
Found at i:30838264 original size:18 final size:16
Alignment explanation
Indices: 30838241--30838274 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
30838231 CATTAAAAAT
30838241 ATAATTTTATTATTTTTA
1 ATAA-TTTA-TATTTTTA
30838259 ATAATTTATATTTTTA
1 ATAATTTATATTTTTA
30838275 TAGTTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATAATTTATATTTTTA
Found at i:30838339 original size:32 final size:31
Alignment explanation
Indices: 30838236--30838344 Score: 99
Period size: 32 Copynumber: 3.7 Consensus size: 31
30838226 TATGACATTA
*
30838236 AAAATATAATTTTATTA-TTTTTAATA-ATT
1 AAAATATAATTTTATTATTTTTTAAAAGATT
* *
30838265 ----TATATTTTTA-TAGTTTTTAAAAGATT
1 AAAATATAATTTTATTATTTTTTAAAAGATT
* *
30838291 AAATTAAAATTTTATTATTTTTTGAAAA-ATT
1 AAAATATAATTTTATTATTTTTT-AAAAGATT
30838322 AAAAATATAATTTTATTATTTTT
1 -AAAATATAATTTTATTATTTTT
30838345 AATTTAAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 15
0.74 0.08 0.17
Matches are distributed among these distances:
24 2 0.03
25 17 0.27
26 3 0.05
30 8 0.12
31 10 0.16
32 24 0.38
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (31 bp):
AAAATATAATTTTATTATTTTTTAAAAGATT
Found at i:30839565 original size:14 final size:14
Alignment explanation
Indices: 30839546--30839575 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
30839536 AAGTGATTTT
*
30839546 AATTGAAATGGTAA
1 AATTGAAATCGTAA
30839560 AATTGAAATCGTAA
1 AATTGAAATCGTAA
30839574 AA
1 AA
30839576 GTTATGAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.03, G:0.17, T:0.27
Consensus pattern (14 bp):
AATTGAAATCGTAA
Found at i:30840620 original size:14 final size:15
Alignment explanation
Indices: 30840590--30840638 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 15
30840580 ATAAGAAAAT
*
30840590 ATTATTAAATTATTTA
1 ATTATT-AATTAGTTA
30840606 ATT-TTAATTAGTTA
1 ATTATTAATTAGTTA
30840620 ATTATTACATTATGTTA
1 ATTATTA-ATTA-GTTA
30840637 AT
1 AT
30840639 AATATTGTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 11 0.38
15 5 0.17
16 7 0.24
17 6 0.21
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (15 bp):
ATTATTAATTAGTTA
Found at i:30848780 original size:37 final size:37
Alignment explanation
Indices: 30848739--30848811 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
30848729 AAGACCTTAG
30848739 ATTTTGGGTTTAATAGTAAGAGTGTTTTGTACTTCAT
1 ATTTTGGGTTTAATAGTAAGAGTGTTTTGTACTTCAT
*
30848776 ATTTTGGGTTTAATAGTCAGAGTGTTTTGTACTTCA
1 ATTTTGGGTTTAATAGTAAGAGTGTTTTGTACTTCA
30848812 GAGGTCGAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.23, C:0.07, G:0.22, T:0.48
Consensus pattern (37 bp):
ATTTTGGGTTTAATAGTAAGAGTGTTTTGTACTTCAT
Found at i:30855482 original size:21 final size:22
Alignment explanation
Indices: 30855439--30855489 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
30855429 AAGGTGGAAG
**
30855439 TTATGTGGCAGTTTATCTGCAA
1 TTATGTGGCAGTTTATCAACAA
*
30855461 TTATGTGGCTG-TTATCAACAA
1 TTATGTGGCAGTTTATCAACAA
30855482 TTATGTGG
1 TTATGTGG
30855490 GGGCATGTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41
Consensus pattern (22 bp):
TTATGTGGCAGTTTATCAACAA
Found at i:30858919 original size:4 final size:4
Alignment explanation
Indices: 30858910--30858950 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
30858900 ATGGACCATA
30858910 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
30858951 ACAGTATGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:30858919 original size:28 final size:28
Alignment explanation
Indices: 30858888--30858984 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
30858878 CATACATAAT
30858888 ATACATAACAATATGGACCATAACATAC
1 ATACATAACAATATGGACCATAACATAC
* ** *
30858916 ATACAT-ACATACATACATACAT-ACATAC
1 ATACATAACA-ATATGGA-CCATAACATAC
* *
30858944 ATACATAACAGTATGGACCATACCATAC
1 ATACATAACAATATGGACCATAACATAC
30858972 ATACATAACAATA
1 ATACATAACAATA
30858985 CATGTTATAC
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
27 6 0.11
28 42 0.78
29 6 0.11
ACGTcount: A:0.49, C:0.23, G:0.05, T:0.23
Consensus pattern (28 bp):
ATACATAACAATATGGACCATAACATAC
Found at i:30859493 original size:144 final size:142
Alignment explanation
Indices: 30859232--30859555 Score: 431
Period size: 144 Copynumber: 2.2 Consensus size: 142
30859222 GTTTTTTTAG
* * *
30859232 TTTTTTTAACTATTTCCAAATAAAATTTTGAATTTTTAAGTAAAGAAGTGATTTTCATAAAAAAA
1 TTTTTTTAACTATTTCAAAATAAAATTTTAAATTTTTAACTAAAGAAGTGATTTTCAT-------
30859297 AAAAAAAAAGTTTAGATTTTTAAAAAATAAAAATCTGTTTTTAGTCATTTTAAAGAAAAAGTTTA
59 AAAAAAAAAGTTTAGATTTTTAAAAAATAAAAA-CTGTTTTTAGTCATTTTAAAGAAAAAGTTTA
30859362 AATTTTTAAACAAAGTCTTGA
123 AATTTTTAAACAAAGT-TTGA
*
30859383 TTTTTTTTAACTATTTCAAAATAAAATTTTAAAATTTTTAACTAAAGTAA-TGATTTTCAT-TAA
1 -TTTTTTTAACTATTTCAAAATAAAATTTT-AAATTTTTAACTAAAG-AAGTGATTTTCATAAAA
*
30859446 AAAAA-TTTAGATTTTTTAAAAAATAAAAA-TGTTGTTTAGTGATTTTAAAGAAAAAGTTTAAAT
63 AAAAAGTTTAGA-TTTTTAAAAAATAAAAACTGTT-TTTAGTCATTTTAAAGAAAAAGTTTAAAT
*
30859509 TTTTAAACAAAGTTTTA
126 TTTTAAACAAAGTTTGA
30859526 TTTTTTTAACTATTTCAAAATAAAAGTTTT
1 TTTTTTTAACTATTTCAAAATAAAA-TTTT
30859556 GATTTTAAAG
Statistics
Matches: 161, Mismatches: 6, Indels: 19
0.87 0.03 0.10
Matches are distributed among these distances:
142 25 0.16
143 11 0.07
144 47 0.29
145 24 0.15
152 28 0.17
153 24 0.15
154 2 0.01
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (142 bp):
TTTTTTTAACTATTTCAAAATAAAATTTTAAATTTTTAACTAAAGAAGTGATTTTCATAAAAAAA
AAGTTTAGATTTTTAAAAAATAAAAACTGTTTTTAGTCATTTTAAAGAAAAAGTTTAAATTTTTA
AACAAAGTTTGA
Found at i:30859608 original size:24 final size:24
Alignment explanation
Indices: 30859540--30859608 Score: 63
Period size: 24 Copynumber: 2.8 Consensus size: 24
30859530 TTTAACTATT
*
30859540 TCAAAATAAAAGTTTTGATTTTAAA
1 TCAAAAGAAAA-TTTTGATTTTAAA
*
30859565 GC-AAAGTAGAAATTTT-ATTTT-AA
1 TCAAAAG-A-AAATTTTGATTTTAAA
30859588 TCAAAAGAAAACTTTTGATTT
1 TCAAAAGAAAA-TTTTGATTT
30859609 AAAAAAAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
22 3 0.08
23 8 0.22
24 16 0.44
25 6 0.17
26 3 0.08
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (24 bp):
TCAAAAGAAAATTTTGATTTTAAA
Found at i:30860193 original size:20 final size:21
Alignment explanation
Indices: 30860156--30860195 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
30860146 GTAATTTTTA
* *
30860156 TTTATTTTTATTTCATATTTG
1 TTTATTTTCATGTCATATTTG
30860177 TTTATTTTCATGT-ATATTT
1 TTTATTTTCATGTCATATTT
30860196 ATATTTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (21 bp):
TTTATTTTCATGTCATATTTG
Found at i:30865658 original size:24 final size:24
Alignment explanation
Indices: 30865627--30865677 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
30865617 CTAAACAAAA
* *
30865627 TTAGCTCTTACGAGCCCAAAAGGG
1 TTAGCTCTAACGAGCCCAAAAAGG
30865651 TTAGCTCTAACGAGCCCAAAAAGG
1 TTAGCTCTAACGAGCCCAAAAAGG
30865675 TTA
1 TTA
30865678 ACCAGTATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.22
Consensus pattern (24 bp):
TTAGCTCTAACGAGCCCAAAAAGG
Found at i:30876392 original size:17 final size:19
Alignment explanation
Indices: 30876366--30876410 Score: 58
Period size: 17 Copynumber: 2.5 Consensus size: 19
30876356 ATAGTTTGCA
*
30876366 TGCATCTTTATTTT-T-AT
1 TGCATTTTTATTTTGTCAT
30876383 TGCATTTTTATTTTGTCAT
1 TGCATTTTTATTTTGTCAT
*
30876402 TACATTTTT
1 TGCATTTTT
30876411 TTGTTAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 13 0.54
18 1 0.04
19 10 0.42
ACGTcount: A:0.18, C:0.11, G:0.07, T:0.64
Consensus pattern (19 bp):
TGCATTTTTATTTTGTCAT
Found at i:30876409 original size:19 final size:17
Alignment explanation
Indices: 30876372--30876410 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
30876362 TGCATGCATC
*
30876372 TTTATTTTTATTGCATT
1 TTTATTTTTATTACATT
30876389 TTTATTTTGTCATTACATT
1 TTTATTTT-T-ATTACATT
30876408 TTT
1 TTT
30876411 TTGTTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 1 0.05
19 10 0.53
ACGTcount: A:0.18, C:0.08, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTATTTTTATTACATT
Found at i:30886428 original size:20 final size:20
Alignment explanation
Indices: 30886390--30886434 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
30886380 GTTTAAATCA
*
30886390 AGAAAAAAACACAAAAAAAG
1 AGAAAAAAAAACAAAAAAAG
* * *
30886410 AGAAAAAAAAAGAAGAAAAT
1 AGAAAAAAAAACAAAAAAAG
30886430 AGAAA
1 AGAAA
30886435 GAGCAAGAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.80, C:0.04, G:0.13, T:0.02
Consensus pattern (20 bp):
AGAAAAAAAAACAAAAAAAG
Found at i:30886892 original size:42 final size:42
Alignment explanation
Indices: 30886832--30887264 Score: 528
Period size: 42 Copynumber: 10.3 Consensus size: 42
30886822 AAGGAAAGCA
* **
30886832 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGCCCATTTACTT
* * * *
30886874 TTCATTGCATTTAAAGGCCTAGATATGGAGGTCTATTTACTT
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGCCCATTTACTT
* * *
30886916 TTCATTGCATTTAGAGGTCC-AAGTGTGAAGGCCCATTTACTT
1 TTCATTGCATTTAAAGG-CCTAGGTGTGGAGGCCCATTTACTT
*
30886958 TTCATTGCATTTAAAGGCCTAGGTGTGGAAGCCCATTTACTT
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGCCCATTTACTT
* * *
30887000 TTCATTGCATTTAGAGGCCCAAGTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGCCCATTTACTT
* * *
30887042 TTCATTGCATTTAGAGGCCCAGGTGTGGATGCCCATTTACTT
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGCCCATTTACTT
* * * *
30887084 TTCATTGCTTTTAAAGGCCTAGATGTAGAGGTCCATTTACTCT
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGCCCATTTACT-T
* * *
30887127 TT-ATTGCATTTAAAGACCCAAGTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGCCCATTTACTT
* * * *
30887168 TTCATCGCATTTAGAGACCTAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGCCCATTTACTT
* * * * *
30887210 TTCGTCGCATTTAAAGGCCCAGGTGTGGAGGTCCATCTACTT
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGCCCATTTACTT
*
30887252 TTCCTTGCATTTA
1 TTCATTGCATTTA
30887265 GAGGTTTAGG
Statistics
Matches: 339, Mismatches: 48, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
41 5 0.01
42 329 0.97
43 5 0.01
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (42 bp):
TTCATTGCATTTAAAGGCCTAGGTGTGGAGGCCCATTTACTT
Found at i:30887057 original size:126 final size:126
Alignment explanation
Indices: 30886832--30887264 Score: 593
Period size: 126 Copynumber: 3.4 Consensus size: 126
30886822 AAGGAAAGCA
* * *
30886832 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTTCATTTACTTTTCATTGCATTTAAAGG-CCTAG
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAAG
* * * * * *
30886896 ATATGGAGGTCTATTTACTTTTCATTGCATTTAGAGGTCCAAGTGTGAAGGCCCATTTACTT
66 -TGTGGAGGCCCATTTACTTTTCATTGCATTTAGAGGACCAGGTGTGGAGGCCCATTTACTT
* * *
30886958 TTCATTGCATTTAAAGGCCTAGGTGTGGAAGCCCATTTACTTTTCATTGCATTTAGAGGCCCAAG
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAAG
* *
30887023 TGTGGAGGCCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGATGCCCATTTACTT
66 TGTGGAGGCCCATTTACTTTTCATTGCATTTAGAGGACCAGGTGTGGAGGCCCATTTACTT
* * * *
30887084 TTCATTGCTTTTAAAGGCCTAGATGTAGAGGTCCATTTACTCTTT-ATTGCATTTAAAGACCCAA
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGTCCATTTACT-TTTCATTGCATTTAAAGGCCCAA
* *
30887148 GTGTGGAGGCCCATTTACTTTTCATCGCATTTAGA-GACCTAGGTGTGGAGGTCCATTTACTT
65 GTGTGGAGGCCCATTTACTTTTCATTGCATTTAGAGGACC-AGGTGTGGAGGCCCATTTACTT
* * * * *
30887210 TTCGTCGCATTTAAAGGCCCAGGTGTGGAGGTCCATCTACTTTTCCTTGCATTTA
1 TTCATTGCATTTAAAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTA
30887265 GAGGTTTAGG
Statistics
Matches: 271, Mismatches: 32, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
125 6 0.02
126 258 0.95
127 7 0.03
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (126 bp):
TTCATTGCATTTAAAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAAG
TGTGGAGGCCCATTTACTTTTCATTGCATTTAGAGGACCAGGTGTGGAGGCCCATTTACTT
Found at i:30887283 original size:84 final size:84
Alignment explanation
Indices: 30886832--30887290 Score: 589
Period size: 84 Copynumber: 5.5 Consensus size: 84
30886822 AAGGAAAGCA
* * *
30886832 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTTCATTTACTTTTCATTGCATTTAAAGGCCTAGA
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAGG
* * *
30886897 TATGGAGGTCTATTTACTT
66 TGTGGAGGCCCATTTACTT
* * * *
30886916 TTCATTGCATTTAGAGGTCC-AAGTGTGAAGGCCCATTTACTTTTCATTGCATTTAAAGGCCTAG
1 TTCATTGCATTTAGAGG-CCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAG
*
30886980 GTGTGGAAGCCCATTTACTT
65 GTGTGGAGGCCCATTTACTT
* * * *
30887000 TTCATTGCATTTAGAGGCCCAAGTGTGGAGGCCCATTTACTTTTCATTGCATTTAGAGGCCCAGG
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAGG
*
30887065 TGTGGATGCCCATTTACTT
66 TGTGGAGGCCCATTTACTT
* * * * * *
30887084 TTCATTGCTTTTAAAGGCCTAGATGTAGAGGTCCATTTACTCTTT-ATTGCATTTAAAGACCCAA
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACT-TTTCATTGCATTTAAAGGCCCAG
30887148 GTGTGGAGGCCCATTTACTT
65 GTGTGGAGGCCCATTTACTT
* * * *
30887168 TTCATCGCATTTAGAGACCTAGGTGTGGAGGTCCATTTACTTTTCGTCGCATTTAAAGGCCCAGG
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAGG
* *
30887233 TGTGGAGGTCCATCTACTT
66 TGTGGAGGCCCATTTACTT
* ** * *
30887252 TTCCTTGCATTTAGAGGTTTAGGCGTAGAGGTCCATTTA
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTA
30887291 TTTCTTAATT
Statistics
Matches: 328, Mismatches: 43, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
83 5 0.02
84 318 0.97
85 5 0.02
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (84 bp):
TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAGG
TGTGGAGGCCCATTTACTT
Found at i:30887743 original size:3 final size:3
Alignment explanation
Indices: 30887735--30887780 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
30887725 AAGGGCCCAA
30887735 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
30887781 AGGTTTCATG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:30888300 original size:148 final size:146
Alignment explanation
Indices: 30888181--30888851 Score: 630
Period size: 148 Copynumber: 4.5 Consensus size: 146
30888171 GATTTAGGGG
* * *
30888181 AAAAATTTTGATTTTTTTAAAACAATTTTGAAATAAAAGTTTTGATTTTTAAGAAAAATAGTAAT
1 AAAAATTTTGATTTTTTT--AACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGAT
* *
30888246 TTTCTTTAAAAAAGAGAAAGTTTAGATTTTTTTTTAAAATAAAAATATGTTTTTTAGTCATTTTA
64 TTTCTTTAAAAAAGAGAAAGTTTAGATTTTTTTTAAAAATAAAAATATGCTTTTTA-T-ATTTTA
30888311 AAAAAAAGTTTAAATTTTTAA
127 AAAAAAAGTTTAAA-TTTTAA
* ** *
30888332 ATAAAGTTTTGATTTTTTTAACTATTTCAAAATAAAAGTTTGGATTTTTAAGTAAAATAGTGATT
1 A-AAAATTTTGATTTTTTTAACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATT
30888397 TTCTTT-AAAAAGAGAAAGTTTAGA---TTTTTAAAAATAAAAATATGCTTTTTAGTCATTTTAA
65 TTCTTTAAAAAAGAGAAAGTTTAGATTTTTTTTAAAAATAAAAATATGCTTTTTA-T-ATTTT-A
30888458 AAAAAAAGTTTAAATTTTTAA
127 AAAAAAAGTTTAAA-TTTTAA
*
30888479 ACAAAATTTTGATTTTTTTTAACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGAT
1 A-AAAATTTTGA-TTTTTTTAACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGAT
* ** * *
30888544 TTTCATTAAAAAA-A-AAAGTTTAGA--TTTTAAAAAAATAAAAATCTGTTTTTTAGTCATTTTA
64 TTTCTTTAAAAAAGAGAAAGTTTAGATTTTTTTTAAAAATAAAAATATGCTTTTTA-T-ATTTT-
* *
30888605 AAGAAAAAATTAATTTTTTAACTATTTCGAA
126 ---AAAAAA--AA--GTTTAA--ATTT-TAA
* * * * * *
30888636 ATAAAAGTCTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTGGATTTTTAAGTAAAGTGGTAA
1 A-AAAA-TTTTGA-TTTTTTTAACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGA
* * * *
30888701 TTTTCATTACAAAAAGA-AAA-TTTAGA-TTTTTTAAAAAATAAAAATTTG-TTTTTTTATTTTA
63 TTTTCTTTA-AAAAAGAGAAAGTTTAGATTTTTTTTAAAAATAAAAATATGCTTTTTATATTTTA
*
30888762 AAGAAAAA-TAAATAAATTTTTAA
127 AA-AAAAAGT--TTAAA-TTTTAA
* * * * * * *
30888785 ACGAAGTTTTGATTTTTTTAACTATTTAGAAATAAAATTTTTGATTTTGAAGTAAAGTAGAGATT
1 A-AAAATTTTGATTTTTTTAACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATT
30888850 TT
65 TT
30888852 GTTTTAATCA
Statistics
Matches: 452, Mismatches: 45, Indels: 50
0.83 0.08 0.09
Matches are distributed among these distances:
146 33 0.07
147 90 0.20
148 91 0.20
149 30 0.07
150 49 0.11
151 10 0.02
152 18 0.04
153 5 0.01
154 3 0.01
155 5 0.01
156 3 0.01
157 13 0.03
158 63 0.14
159 16 0.04
160 23 0.05
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (146 bp):
AAAAATTTTGATTTTTTTAACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATTT
TCTTTAAAAAAGAGAAAGTTTAGATTTTTTTTAAAAATAAAAATATGCTTTTTATATTTTAAAAA
AAAGTTTAAATTTTAA
Found at i:30888369 original size:51 final size:50
Alignment explanation
Indices: 30888305--30888546 Score: 160
Period size: 51 Copynumber: 4.9 Consensus size: 50
30888295 TTTTTTAGTC
* * *
30888305 ATTTTAAAAAAAAGTTTAAATTTTTAAATAAAGTTTTGATTTTTTTAACT
1 ATTTTAAAAAAAAGTTTAGATTTTTAAATAAAATTGTGATTTTTTTAACT
* * * *
30888355 ATTTCAAAATAAAAGTTTGGATTTTTAAGTAAAATAGTGATTTTCTTTAA--
1 ATTTTAAAA-AAAAGTTTAGATTTTTAAATAAAATTGTGATTTT-TTTAACT
* * * * * *
30888405 A----AAGAGAAAGTTTAGATTTTTAAAAATAAAAATATG--CTTTTT-AGT
1 ATTTTAAAAAAAAGTTTAGATTTTT--AAATAAAATTGTGATTTTTTTAACT
* * *
30888450 CATTTTAAAAAAAAAGTTTAAATTTTTAAACAAAATTTTGATTTTTTTTAACT
1 -ATTTT-AAAAAAAAGTTTAGATTTTTAAATAAAATTGTGA-TTTTTTTAACT
* * * * *
30888503 ATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGATTTT
1 ATTTT-AAAAAAAAGTTTAGATTTTTAAATAAAATTGTGATTTT
30888547 CATTAAAAAA
Statistics
Matches: 144, Mismatches: 32, Indels: 31
0.70 0.15 0.15
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 16 0.11
46 4 0.03
47 9 0.06
49 10 0.07
50 9 0.06
51 49 0.34
52 41 0.28
53 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.45
Consensus pattern (50 bp):
ATTTTAAAAAAAAGTTTAGATTTTTAAATAAAATTGTGATTTTTTTAACT
Found at i:30888623 original size:147 final size:148
Alignment explanation
Indices: 30888182--30888851 Score: 759
Period size: 147 Copynumber: 4.4 Consensus size: 148
30888172 ATTTAGGGGA
* * * * * *
30888182 AAAATTTTGATTTTTTTAAAACAATTTTGAAATAAAAGTTTTGATTTTTAAGAAAAATAGTAATT
1 AAAATTTTGATTTTTTT-TAACTATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGATT
* **
30888247 TTCTTTAAAAAAGAGAAAGTTTAGATTTTTTTTTAAAATAAAAATATGTTTTTTAGTCATTTTAA
65 TTCATTAAAAAAGA-AAAGTTTAGA-TTTTTTAAAAAATAAAAATATGTTTTTTAGTCATTTTAA
* *
30888312 AAAAAAGTTTAAATTTTTAAAT
128 AAAAAA-ATTAAATTTTTAAAC
* * * *
30888334 AAAGTTTTGA-TTTTTTTAACTATTTCAAAATAAAAGTTTGGATTTTTAAGTAAAATAGTGATTT
1 AAAATTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGATTT
* *
30888398 TC-TTTAAAAAGAGAAAGTTTAGA-TTTTT-AAAAATAAAAATATGCTTTTTAGTCATTTTAAAA
66 TCATTAAAAAAGA-AAAGTTTAGATTTTTTAAAAAATAAAAATATGTTTTTTAGTCATTTTAAAA
30888460 AAAAAGTTTAAATTTTTAAAC
130 AAAAA--TTAAATTTTTAAAC
*
30888481 AAAATTTTGATTTTTTTTAACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGATTT
1 AAAATTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGATTT
* *
30888546 TCATTAAAAAA-AAAAGTTTAGA-TTTTAAAAAAATAAAAATCTGTTTTTTAGTCATTTTAAAGA
66 TCATTAAAAAAGAAAAGTTTAGATTTTTTAAAAAATAAAAATATGTTTTTTAGTCATTTTAAA-A
*
30888609 AAAAATTAATTTTTTAACTATTTC
130 AAAAATTAAATTTTTAA--A---C
* * *
30888633 GAAATAAAAGTCTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTGGATTTTTAAGTAAAGTGG
1 -----AAAA-TTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAGTAG
* *
30888698 TAATTTTCATTACAAAAAGAAAA-TTTAGATTTTTTAAAAAATAAAAATTTGTTTTTT--T-ATT
60 TGATTTTCATTA-AAAAAGAAAAGTTTAGATTTTTTAAAAAATAAAAATATGTTTTTTAGTCATT
*
30888759 TTAAAGAAAAATAAATAAATTTTTAAAC
124 TT-AA-AAAAA-AATTAAATTTTTAAAC
* * * * * *
30888787 GAAGTTTTGA-TTTTTTTAACTATTTAGAAATAAAATTTTTGATTTTGAAGTAAAGTAGAGATTT
1 AAAATTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGATTT
30888851 T
66 T
30888852 GTTTTAATCA
Statistics
Matches: 453, Mismatches: 42, Indels: 51
0.83 0.08 0.09
Matches are distributed among these distances:
146 36 0.08
147 100 0.22
148 89 0.20
149 36 0.08
150 43 0.09
151 6 0.01
152 10 0.02
154 1 0.00
157 10 0.02
158 69 0.15
159 24 0.05
160 29 0.06
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (148 bp):
AAAATTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGATTT
TCATTAAAAAAGAAAAGTTTAGATTTTTTAAAAAATAAAAATATGTTTTTTAGTCATTTTAAAAA
AAAATTAAATTTTTAAAC
Found at i:30888686 original size:32 final size:33
Alignment explanation
Indices: 30888618--30888686 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
30888608 AAAAAATTAA
30888618 TTTTTTAACTATTTCGAAATAAAAGTCTTGATT
1 TTTTTTAACTATTTCGAAATAAAAGTCTTGATT
30888651 TTTTTTAACTATTTCGAAATAAAAGT-TTGGATT
1 TTTTTTAACTATTTCGAAATAAAAGTCTT-GATT
30888684 TTT
1 TTT
30888687 AAGTAAAGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
32 2 0.06
33 33 0.94
ACGTcount: A:0.32, C:0.07, G:0.10, T:0.51
Consensus pattern (33 bp):
TTTTTTAACTATTTCGAAATAAAAGTCTTGATT
Found at i:30896976 original size:30 final size:30
Alignment explanation
Indices: 30896940--30897004 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
30896930 CAACAAAAAC
* *
30896940 AAAAAATAAAAGTTAGATATAATATGAATT
1 AAAAAATAAAAGTTAGATATAATACGAAAT
*
30896970 AAAAAATAAAAGTTAGATATACTACGAAAT
1 AAAAAATAAAAGTTAGATATAATACGAAAT
30897000 AAAAA
1 AAAAA
30897005 TTGGAAGTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.63, C:0.03, G:0.09, T:0.25
Consensus pattern (30 bp):
AAAAAATAAAAGTTAGATATAATACGAAAT
Found at i:30905292 original size:15 final size:16
Alignment explanation
Indices: 30905268--30905297 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
30905258 ATTTTTTTAT
30905268 AATTTCAAAAATAATA
1 AATTTCAAAAATAATA
30905284 AATTT-AAAAATAAT
1 AATTTCAAAAATAAT
30905298 TTAAATTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
AATTTCAAAAATAATA
Done.